Query 015787
Match_columns 400
No_of_seqs 158 out of 599
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04149 sat sulfate adenylylt 100.0 8E-116 2E-120 886.7 36.1 326 53-399 3-329 (391)
2 COG2046 MET3 ATP sulfurylase ( 100.0 1E-113 3E-118 851.9 29.3 322 53-399 3-325 (397)
3 PRK05537 bifunctional sulfate 100.0 7E-112 2E-116 894.2 36.6 334 53-399 1-334 (568)
4 cd00517 ATPS ATP-sulfurylase. 100.0 2E-108 3E-113 824.9 34.2 303 81-399 1-303 (353)
5 TIGR00339 sopT ATP sulphurylas 100.0 4E-107 9E-112 822.2 35.9 332 56-399 1-333 (383)
6 KOG4238 Bifunctional ATP sulfu 100.0 3.3E-82 7.2E-87 627.5 21.6 335 60-398 231-570 (627)
7 PF01747 ATP-sulfurylase: ATP- 100.0 1.8E-66 3.9E-71 490.2 15.4 163 224-399 1-163 (215)
8 KOG0636 ATP sulfurylase (sulfa 100.0 4E-67 8.8E-72 517.7 4.0 394 1-399 1-398 (466)
9 PF14306 PUA_2: PUA-like domai 100.0 6.3E-55 1.4E-59 395.3 12.2 159 54-217 1-160 (160)
10 KOG0636 ATP sulfurylase (sulfa 100.0 4.7E-46 1E-50 368.3 -1.5 291 87-397 11-302 (466)
11 cd02039 cytidylyltransferase_l 98.6 1.3E-07 2.8E-12 81.1 8.3 95 250-358 6-105 (143)
12 cd02169 Citrate_lyase_ligase C 97.9 0.00033 7.1E-09 70.0 15.2 142 230-396 99-263 (297)
13 smart00764 Citrate_ly_lig Citr 96.8 0.0099 2.1E-07 55.4 10.1 96 248-356 3-118 (182)
14 cd02163 PPAT Phosphopantethein 96.2 0.039 8.4E-07 49.7 9.9 82 251-354 7-88 (153)
15 cd02165 NMNAT Nicotinamide/nic 95.7 0.07 1.5E-06 49.3 9.5 94 251-356 7-106 (192)
16 cd02064 FAD_synthetase_N FAD s 95.7 0.19 4.1E-06 46.3 12.0 99 246-356 2-110 (180)
17 PRK13670 hypothetical protein; 95.5 0.082 1.8E-06 54.9 9.7 99 245-357 2-106 (388)
18 cd02168 NMNAT_Nudix Nicotinami 95.2 0.18 3.8E-06 47.0 10.1 80 251-341 7-89 (181)
19 cd02166 NMNAT_Archaea Nicotina 95.2 0.32 7E-06 44.3 11.6 91 251-353 7-101 (163)
20 TIGR01510 coaD_prev_kdtB pante 94.9 0.25 5.4E-06 44.5 10.0 82 251-354 7-88 (155)
21 PRK00168 coaD phosphopantethei 94.7 0.38 8.3E-06 43.5 10.7 83 250-354 8-90 (159)
22 cd02167 NMNAT_NadR Nicotinamid 94.2 0.73 1.6E-05 41.9 11.3 84 251-345 7-94 (158)
23 PLN02945 nicotinamide-nucleoti 94.1 0.27 5.8E-06 47.4 8.7 100 245-355 22-140 (236)
24 TIGR00482 nicotinate (nicotina 93.9 0.44 9.6E-06 44.2 9.5 109 251-379 5-120 (193)
25 PRK13964 coaD phosphopantethei 93.7 0.24 5.2E-06 44.6 7.1 82 251-353 9-90 (140)
26 cd02171 G3P_Cytidylyltransfera 93.7 0.34 7.4E-06 41.8 7.9 90 244-356 2-96 (129)
27 PRK00777 phosphopantetheine ad 93.5 0.94 2E-05 41.1 10.7 120 245-396 3-127 (153)
28 PRK06973 nicotinic acid mononu 93.5 0.87 1.9E-05 44.5 11.1 106 245-357 23-134 (243)
29 PRK01153 nicotinamide-nucleoti 93.4 0.7 1.5E-05 42.8 9.9 83 251-345 8-93 (174)
30 PRK05627 bifunctional riboflav 92.9 2.5 5.3E-05 42.7 13.7 101 245-356 15-125 (305)
31 PRK00071 nadD nicotinic acid m 92.5 1.2 2.7E-05 41.5 10.4 116 245-380 5-128 (203)
32 PRK13671 hypothetical protein; 92.5 0.59 1.3E-05 47.1 8.6 97 246-358 2-106 (298)
33 PF06574 FAD_syn: FAD syntheta 92.5 0.27 5.8E-06 44.8 5.6 137 244-396 6-148 (157)
34 PRK05379 bifunctional nicotina 92.4 0.93 2E-05 46.1 10.0 92 251-355 14-114 (340)
35 TIGR00083 ribF riboflavin kina 92.0 1.2 2.7E-05 44.5 10.2 101 247-356 2-109 (288)
36 PRK08887 nicotinic acid mononu 92.0 1.8 4E-05 39.8 10.6 102 245-357 3-111 (174)
37 cd09286 NMNAT_Eukarya Nicotina 91.5 2.7 5.8E-05 40.4 11.6 79 246-331 2-84 (225)
38 PF08218 Citrate_ly_lig: Citra 91.5 1.2 2.6E-05 42.0 8.7 126 250-394 6-146 (182)
39 TIGR00124 cit_ly_ligase [citra 91.2 3.2 6.9E-05 42.4 12.3 131 244-393 139-289 (332)
40 TIGR00125 cyt_tran_rel cytidyl 90.9 0.69 1.5E-05 34.9 5.6 56 247-308 3-62 (66)
41 cd02164 PPAT_CoAS phosphopante 89.5 2.3 5.1E-05 38.2 8.7 76 247-332 2-84 (143)
42 TIGR01527 arch_NMN_Atrans nico 89.0 3.9 8.5E-05 37.7 9.9 80 251-344 7-89 (165)
43 PF01467 CTP_transf_2: Cytidyl 88.6 0.6 1.3E-05 39.9 4.0 53 251-308 5-60 (157)
44 COG1057 NadD Nicotinic acid mo 86.5 2.7 5.8E-05 39.9 7.4 110 251-380 11-128 (197)
45 TIGR02199 rfaE_dom_II rfaE bif 86.2 7.3 0.00016 34.7 9.7 97 239-357 7-108 (144)
46 PRK08099 bifunctional DNA-bind 85.5 13 0.00028 38.9 12.5 98 244-354 53-168 (399)
47 TIGR01518 g3p_cytidyltrns glyc 84.5 1.4 3E-05 38.0 4.2 89 248-357 3-94 (125)
48 cd02172 RfaE_N N-terminal doma 84.4 9.7 0.00021 34.0 9.7 90 244-357 5-99 (144)
49 TIGR01526 nadR_NMN_Atrans nico 84.2 2.3 5E-05 42.9 6.2 51 251-308 9-62 (325)
50 COG0196 RibF FAD synthase [Coe 83.9 8.7 0.00019 38.9 10.1 101 244-355 16-125 (304)
51 COG0669 CoaD Phosphopantethein 83.4 9.3 0.0002 35.4 9.1 80 251-352 10-89 (159)
52 PRK07152 nadD putative nicotin 83.0 9.1 0.0002 38.8 10.0 114 246-380 3-125 (342)
53 COG3053 CitC Citrate lyase syn 80.2 28 0.0006 35.7 11.9 178 194-398 99-301 (352)
54 cd02170 cytidylyltransferase c 79.8 10 0.00022 32.9 7.9 88 245-356 3-95 (136)
55 cd02156 nt_trans nucleotidyl t 79.1 4.3 9.4E-05 33.7 5.1 49 251-306 7-58 (105)
56 COG1056 NadR Nicotinamide mono 78.7 6.6 0.00014 36.8 6.6 64 252-325 12-80 (172)
57 PRK13793 nicotinamide-nucleoti 76.8 15 0.00033 35.0 8.6 76 253-344 14-94 (196)
58 PLN02388 phosphopantetheine ad 76.0 14 0.00031 34.6 8.1 99 243-359 19-123 (177)
59 PF05636 HIGH_NTase1: HIGH Nuc 75.2 4.4 9.6E-05 42.2 5.0 98 246-359 3-108 (388)
60 PRK07143 hypothetical protein; 75.1 27 0.00058 35.0 10.2 102 244-359 16-122 (279)
61 COG0414 PanC Panthothenate syn 73.5 4.1 9E-05 40.8 4.0 39 229-267 5-45 (285)
62 PF02569 Pantoate_ligase: Pant 70.4 4.2 9.1E-05 40.8 3.3 67 229-299 5-73 (280)
63 COG1323 Predicted nucleotidylt 65.2 37 0.0008 35.3 9.0 98 246-359 3-108 (358)
64 TIGR00018 panC pantoate--beta- 62.9 4.8 0.00011 40.4 2.1 40 229-268 5-46 (282)
65 PLN02660 pantoate--beta-alanin 59.1 6.6 0.00014 39.5 2.3 39 229-267 4-44 (284)
66 PF14359 DUF4406: Domain of un 56.0 17 0.00036 30.4 3.9 69 206-294 1-75 (92)
67 cd02786 MopB_CT_3 The MopB_CT_ 54.6 26 0.00056 29.2 4.9 38 138-175 32-71 (116)
68 cd02790 MopB_CT_Formate-Dh_H F 53.8 30 0.00065 28.6 5.2 37 139-175 37-75 (116)
69 cd02781 MopB_CT_Acetylene-hydr 52.5 30 0.00065 29.4 5.0 37 138-174 34-72 (130)
70 cd02174 CCT CTP:phosphocholine 52.0 1.6E+02 0.0035 26.5 9.9 90 245-356 4-99 (150)
71 cd00508 MopB_CT_Fdh-Nap-like T 51.1 30 0.00065 28.7 4.7 36 139-174 37-74 (120)
72 cd02779 MopB_CT_Arsenite-Ox Th 50.7 36 0.00078 28.7 5.2 37 139-175 35-73 (115)
73 cd02792 MopB_CT_Formate-Dh-Na- 50.5 41 0.00088 28.1 5.5 37 139-175 37-75 (122)
74 cd02785 MopB_CT_4 The MopB_CT_ 49.9 39 0.00086 28.7 5.4 39 138-176 33-73 (124)
75 cd02173 ECT CTP:phosphoethanol 49.7 42 0.00091 30.4 5.7 90 245-357 3-100 (152)
76 cd02787 MopB_CT_ydeP The MopB_ 49.7 30 0.00064 28.9 4.5 35 138-172 32-68 (112)
77 PF01568 Molydop_binding: Moly 49.5 21 0.00046 29.3 3.5 35 139-173 32-68 (110)
78 cd00951 KDGDH 5-dehydro-4-deox 49.3 1.3E+02 0.0028 29.7 9.6 104 269-397 29-132 (289)
79 PRK01170 phosphopantetheine ad 48.6 62 0.0013 33.2 7.3 56 246-308 3-62 (322)
80 COG1500 Predicted exosome subu 48.5 1.8 4E-05 42.1 -3.4 47 138-191 20-72 (234)
81 PTZ00308 ethanolamine-phosphat 48.0 76 0.0016 32.8 7.9 90 244-356 12-106 (353)
82 PRK13477 bifunctional pantoate 46.6 40 0.00088 36.6 5.9 37 229-266 5-42 (512)
83 PF09142 TruB_C: tRNA Pseudour 46.3 20 0.00044 27.3 2.7 34 138-171 3-45 (56)
84 PRK00380 panC pantoate--beta-a 45.9 28 0.00062 34.8 4.4 40 229-268 5-46 (281)
85 cd02789 MopB_CT_FmdC-FwdD The 45.8 41 0.00089 28.2 4.8 35 138-172 32-68 (106)
86 cd02788 MopB_CT_NDH-1_NuoG2-N7 45.8 41 0.00089 27.6 4.7 34 139-172 31-66 (96)
87 COG1019 Predicted nucleotidylt 45.6 52 0.0011 30.5 5.6 57 246-309 7-69 (158)
88 cd02780 MopB_CT_Tetrathionate_ 43.8 46 0.00099 29.1 4.9 37 138-174 31-69 (143)
89 cd02778 MopB_CT_Thiosulfate-R- 43.4 61 0.0013 27.2 5.5 37 138-174 31-69 (123)
90 PRK03620 5-dehydro-4-deoxygluc 42.9 1.8E+02 0.0039 28.9 9.6 104 269-397 36-139 (303)
91 cd00560 PanC Pantoate-beta-ala 42.7 52 0.0011 33.0 5.6 40 229-268 5-46 (277)
92 PRK13671 hypothetical protein; 42.2 42 0.00091 34.0 4.9 64 208-282 2-67 (298)
93 cd02777 MopB_CT_DMSOR-like The 42.1 50 0.0011 28.2 4.8 35 139-173 36-72 (127)
94 cd00950 DHDPS Dihydrodipicolin 41.6 2E+02 0.0043 28.0 9.5 104 269-397 29-133 (284)
95 cd02791 MopB_CT_Nitrate-R-NapA 41.6 52 0.0011 27.5 4.8 36 139-174 37-74 (122)
96 PRK07562 ribonucleotide-diphos 41.4 53 0.0011 39.3 6.2 76 102-197 377-453 (1220)
97 cd02793 MopB_CT_DMSOR-BSOR-TMA 41.1 51 0.0011 28.4 4.7 35 139-173 35-71 (129)
98 cd02783 MopB_CT_2 The MopB_CT_ 40.7 53 0.0012 29.5 5.0 34 139-172 34-69 (156)
99 cd02794 MopB_CT_DmsA-EC The Mo 39.3 47 0.001 28.1 4.2 35 139-173 32-68 (121)
100 cd02782 MopB_CT_1 The MopB_CT_ 38.6 75 0.0016 27.0 5.4 38 139-176 35-74 (129)
101 COG0231 Efp Translation elonga 35.0 30 0.00066 30.8 2.4 66 79-167 60-125 (131)
102 cd02776 MopB_CT_Nitrate-R-NarG 34.6 73 0.0016 28.3 4.8 37 138-174 32-70 (141)
103 cd02775 MopB_CT Molybdopterin- 34.5 64 0.0014 25.7 4.1 34 139-172 25-60 (101)
104 TIGR02313 HpaI-NOT-DapA 2,4-di 34.3 3.5E+02 0.0076 26.8 10.0 106 269-398 29-135 (294)
105 cd00954 NAL N-Acetylneuraminic 33.7 3.6E+02 0.0079 26.4 10.0 106 269-398 29-136 (288)
106 PRK04147 N-acetylneuraminate l 33.4 2.7E+02 0.0059 27.4 9.1 106 269-398 32-138 (293)
107 cd02784 MopB_CT_PHLH The MopB_ 32.7 63 0.0014 28.8 4.0 36 139-174 40-77 (137)
108 COG4118 Phd Antitoxin of toxin 31.4 61 0.0013 26.9 3.5 26 144-170 16-41 (84)
109 TIGR00674 dapA dihydrodipicoli 30.9 4.2E+02 0.0092 25.9 9.9 105 269-397 27-131 (285)
110 COG0365 Acs Acyl-coenzyme A sy 30.3 1.1E+02 0.0024 33.3 6.2 83 150-241 347-441 (528)
111 PRK13760 putative RNA-associat 28.0 35 0.00076 33.5 1.7 59 138-205 20-84 (231)
112 cd04498 hPOT1_OB2 hPOT1_OB2: A 27.9 65 0.0014 28.6 3.2 27 133-159 60-87 (123)
113 TIGR03249 KdgD 5-dehydro-4-deo 27.7 4.5E+02 0.0097 25.9 9.5 104 269-397 34-137 (296)
114 PF01472 PUA: PUA domain; Int 27.0 66 0.0014 25.3 2.9 31 136-170 22-52 (74)
115 PRK13599 putative peroxiredoxi 26.6 2.5E+02 0.0055 26.7 7.3 96 134-246 92-205 (215)
116 smart00359 PUA Putative RNA-bi 26.5 76 0.0016 24.2 3.1 21 149-169 31-51 (77)
117 PRK03170 dihydrodipicolinate s 25.6 5.6E+02 0.012 25.0 9.8 104 269-397 30-134 (292)
118 PRK04980 hypothetical protein; 23.8 84 0.0018 27.1 3.1 31 147-177 30-61 (102)
119 COG1370 Prefoldin, molecular c 23.8 75 0.0016 29.4 2.9 29 136-168 102-130 (155)
120 cd00952 CHBPH_aldolase Trans-o 23.6 6.4E+02 0.014 25.2 9.8 105 269-398 37-143 (309)
121 cd06541 ASCH ASC-1 homology or 23.5 1.4E+02 0.003 25.2 4.3 45 127-177 14-58 (105)
122 PF02126 PTE: Phosphotriestera 23.4 3.2E+02 0.0069 27.7 7.6 76 230-320 168-255 (308)
123 COG2205 KdpD Osmosensitive K+ 22.9 1E+03 0.022 28.0 12.0 200 140-392 163-375 (890)
124 PLN02406 ethanolamine-phosphat 22.8 2.8E+02 0.0061 29.6 7.3 99 239-356 47-152 (418)
125 cd04463 S1_EF_like S1_EF_like: 22.7 48 0.001 24.5 1.3 23 145-167 33-55 (55)
126 KOG3199 Nicotinamide mononucle 22.5 1.4E+02 0.0029 29.4 4.5 63 245-307 10-74 (234)
127 PRK07107 inosine 5-monophospha 22.5 1E+03 0.022 25.9 13.1 78 93-174 68-153 (502)
128 cd04470 S1_EF-P_repeat_1 S1_EF 22.1 55 0.0012 25.2 1.5 21 147-167 38-58 (61)
129 PF02126 PTE: Phosphotriestera 21.9 2.1E+02 0.0046 28.9 6.1 134 201-359 75-218 (308)
130 cd00408 DHDPS-like Dihydrodipi 21.9 7.2E+02 0.016 23.9 9.7 104 269-397 26-130 (281)
131 PRK08395 fumarate hydratase; P 21.9 90 0.002 29.1 3.1 23 136-158 2-24 (162)
132 PF07157 DNA_circ_N: DNA circu 21.8 85 0.0019 26.6 2.7 19 269-289 71-89 (93)
133 PRK09875 putative hydrolase; P 21.7 4.9E+02 0.011 26.1 8.6 73 231-320 165-241 (292)
134 PF00701 DHDPS: Dihydrodipicol 21.4 3E+02 0.0066 26.8 6.9 105 268-397 29-134 (289)
135 PF10753 DUF2566: Protein of u 21.2 15 0.00033 28.4 -1.7 13 127-139 38-50 (55)
136 PRK07432 5'-methylthioadenosin 21.1 8.7E+02 0.019 24.6 11.3 76 209-306 158-235 (290)
137 PRK08564 5'-methylthioadenosin 21.0 8.2E+02 0.018 24.2 10.8 75 208-306 158-235 (267)
138 cd03015 PRX_Typ2cys Peroxiredo 20.7 3.4E+02 0.0074 24.2 6.6 46 134-179 94-147 (173)
139 COG1355 Predicted dioxygenase 20.2 1.2E+02 0.0026 30.7 3.8 38 323-361 53-91 (279)
No 1
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=100.00 E-value=8.1e-116 Score=886.74 Aligned_cols=326 Identities=33% Similarity=0.505 Sum_probs=312.8
Q ss_pred ccCCCCcceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCCCeee
Q 015787 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (400)
Q Consensus 53 li~PhGg~lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~p 132 (400)
++.||||+|++|+|+++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 3 ~~~phgg~l~~l~v~~~~~~~~~~~a~~lp~i~i~~~~l~dLell~~G~fsPL~GFM~~~d~~sV~--~~~rL~~G~~-- 78 (391)
T PRK04149 3 LIPPHGGELVNRVVEGRDREEILEEAESLPRIELDERAASDLEMIAIGGFSPLTGFMGREDYDSVV--EEMRLANGLV-- 78 (391)
T ss_pred CCCCCCCcchhccCCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCcccCCCHHHHHHHH--HhCcCCCCCC--
Confidence 568999999999999999999999999999999999999999999999999999999999999999 6999999998
Q ss_pred cceeEEEecCHHHHHhcCCCCeEEEEcCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 015787 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (400)
Q Consensus 133 wpiPI~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~eif~~dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (400)
|||||||+|++|++++|++|++|+|++ +|+++|+|+|+|+|++||+++|++||||+|++||||++++ +.|+|+|||+|
T Consensus 79 wpiPi~L~v~~e~~~~l~~g~~vaL~~-~G~~va~l~V~evf~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~i 156 (391)
T PRK04149 79 WSIPITLDVSEEDAASLKEGDEVALVY-KGEPYGVLEVEEIYTYDKKKEAEKVYKTTDEKHPGVKKLY-EQGDVYLAGPV 156 (391)
T ss_pred cceeEEEeCCHHHHhhCCCCCEEEEee-CCEEEEEEEeeeEecCChHHHHHHHhCCCCcCCchHHHHH-hcCCEEEEeEE
Confidence 599999999999999999999999995 9999999999999999999999999999999999999876 68999999999
Q ss_pred EEeccCCCCCCCCcccCCHHHHHHHHHhcCCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC
Q 015787 213 EVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292 (400)
Q Consensus 213 ~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~d 292 (400)
++++++.+ ++|++||+||+|+|+.|+++||++|+|||||||+|||||+|+| +|+|.+ ++||||||+|+||+|
T Consensus 157 ~~l~~~~~-~~f~~~r~tP~e~r~~f~~~gw~~VvafqTrnP~HraHe~l~~----~a~e~~---d~lll~plvG~~k~~ 228 (391)
T PRK04149 157 TLLNRKFH-EPFPRFWLTPAETRELFEEKGWKTVVAFQTRNPPHRAHEYLQK----CALEIV---DGLLLNPLVGETKSG 228 (391)
T ss_pred EEeecCCC-CCchhhcCCHHHHHHHHHHcCCCeEEEeecCCCCchHHHHHHH----HHHHhc---CeEEEecCcCCCCCC
Confidence 99998775 4799999999999999999999999999999999999999997 567764 799999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCch
Q 015787 293 DVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADH 372 (400)
Q Consensus 293 Di~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~ 372 (400)
|+|+++|||||+++++ ||||+++++|++||++|||||||||+|||||||||||||||||||||||| +|||+|+
T Consensus 229 di~~~~r~~~~~~~~~-~y~p~~~v~l~~lp~~mryAGPrEa~lhAivrkN~GcTh~IvGrDHAG~g------~~Y~~~~ 301 (391)
T PRK04149 229 DIPAEVRMEAYEALLK-NYYPKDRVLLSVTPAAMRYAGPREAIFHAIVRKNYGCTHFIVGRDHAGVG------DYYGPYD 301 (391)
T ss_pred CCCHHHHHHHHHHHHH-hcCCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCcc------ccCCCch
Confidence 9999999999999999 69999999999999999999999999999999999999999999999999 8999999
Q ss_pred hhhHhhhC-CCCCcceEEEeeeeeccCC
Q 015787 373 GKKVLSMA-PGLERLNILPFKVCKASDH 399 (400)
Q Consensus 373 aq~i~~~~-~~l~~i~I~p~~~~vYc~~ 399 (400)
||+||+++ ++..+|+|++|++++||++
T Consensus 302 aq~i~~~~~~~~l~I~~v~~~~~~Yc~~ 329 (391)
T PRK04149 302 AQEIFDEFTEEELGITPLKFEEAFYCPK 329 (391)
T ss_pred HHHHHHhCCcccCCceEEecceeEEecC
Confidence 99999998 3445899999999999986
No 2
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-113 Score=851.86 Aligned_cols=322 Identities=31% Similarity=0.526 Sum_probs=309.1
Q ss_pred ccCCCCcceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCCCeee
Q 015787 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (400)
Q Consensus 53 li~PhGg~lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~p 132 (400)
+..||||+||++++.+.. ..+.+..+|+|+|+.+.++||++|++|+||||+|||||+||+||+ ++|||+||++
T Consensus 3 ~~~phgg~Lv~r~~~~~~---~~~~~~~~~~ield~~~~~dl~lIa~G~fSPl~GFMne~dy~sVv--~~mRL~~G~~-- 75 (397)
T COG2046 3 LSPPHGGKLVRRVAEERD---AMKSIRKLPRIELDQNSFGDLELIAYGAFSPLTGFMNEKDYESVV--ESMRLANGTL-- 75 (397)
T ss_pred CCCCCcchhhhhhccccc---hHHHhccCceEEEchhhHHHHHHHHccCCCcccccccHHHHHHHH--HhccccCCCe--
Confidence 468999999999998766 667889999999999999999999999999999999999999999 8999999999
Q ss_pred cceeEEEecCHHHHHhcCCCCeEEEEcCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 015787 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (400)
Q Consensus 133 wpiPI~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~eif~~dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (400)
|||||||+|+++.+.++++||+|.|.+ +|.++|+|+|+|+|++||..+|.+||+|+|++||||+.++ .+|+++|||+|
T Consensus 76 w~iPItl~v~e~~a~~~~~Gd~i~L~~-~g~piavl~veevy~~dk~~eA~~v~~t~D~~HPgv~~l~-~~g~~~laG~i 153 (397)
T COG2046 76 WPIPITLDVSEEEAEELSVGDRILLTY-KGDPIAVLTVEEVYKPDKKLEAKNVFKTSDIKHPGVKKLY-DMGDYYLAGKI 153 (397)
T ss_pred eeeeeEecCchHhhhccCCCCEEEEcc-CCceEEEEEeeeecccCHHHHHHHhcCCCCCCCCceeeee-ccCCeEeeeeE
Confidence 599999999999999999999999998 9999999999999999999999999999999999999976 79999999999
Q ss_pred EEeccCCCCCCCCcccCCHHHHHHHHHhcCCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC
Q 015787 213 EVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292 (400)
Q Consensus 213 ~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~d 292 (400)
|+++.|.++ +|++|+++|+|+|+.|+++||++|||||||||+||||||||| +|++.. ++||||||||.||+|
T Consensus 154 ~l~~~p~~~-~~~~~~~~P~~~R~~f~~kgwk~vvafQTRNp~HraHEyl~K----~Al~~v---dgllv~plVG~tk~g 225 (397)
T COG2046 154 ELINEPIFK-PFPKYWLTPAETREVFKEKGWKTVVAFQTRNPPHRAHEYLQK----RALEKV---DGLLVHPLVGATKPG 225 (397)
T ss_pred EEEecCCCC-CchhhccCHHHHHHHHHhcCCeEEEEEecCCCchHHHHHHHH----HHHHhc---CcEEEEeeeccccCC
Confidence 999988887 899999999999999999999999999999999999999997 677874 789999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCch
Q 015787 293 DVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADH 372 (400)
Q Consensus 293 Di~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~ 372 (400)
|+++++||++||++++ +|||++|++|+++|++|||||||||+|||||||||||||||||||||||| +|||+|+
T Consensus 226 D~~~e~rm~~ye~l~~-~Yyp~dr~~Ls~~~~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG------~yYg~Y~ 298 (397)
T COG2046 226 DIPDEVRMEYYEALLK-HYYPPDRVFLSVLPAAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVG------DYYGPYD 298 (397)
T ss_pred CchHHHHHHHHHHHHH-hCCCCCcEEEEecHHHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCcc------ccCCccc
Confidence 9999999999999999 79999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhHhhhCC-CCCcceEEEeeeeeccCC
Q 015787 373 GKKVLSMAP-GLERLNILPFKVCKASDH 399 (400)
Q Consensus 373 aq~i~~~~~-~l~~i~I~p~~~~vYc~~ 399 (400)
||+||++++ ++ ||++++|.+++||.+
T Consensus 299 aq~if~~f~~eL-gI~p~~f~e~~YC~~ 325 (397)
T COG2046 299 AQEIFDEFSPEL-GITPVFFEEFFYCPK 325 (397)
T ss_pred HHHHHHhccccc-CcEEEeccceeeccc
Confidence 999999995 66 899999999999985
No 3
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=100.00 E-value=7e-112 Score=894.17 Aligned_cols=334 Identities=33% Similarity=0.523 Sum_probs=319.8
Q ss_pred ccCCCCcceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCCCeee
Q 015787 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (400)
Q Consensus 53 li~PhGg~lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~p 132 (400)
+|+||||+|+||+|+++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 1 ~~~p~gg~l~~~~~~~~~~~~~~~~a~~lp~i~i~~~~~~dlell~~G~~sPL~GfM~~~d~~~V~--~~~~l~~G~~-- 76 (568)
T PRK05537 1 LILPNGGPLPNLYVSPESREKLKAEALSLPSLDLSPRQICDLELLMNGGFSPLKGFMGRADYECVL--ENMRLADGTL-- 76 (568)
T ss_pred CCCCCCCcchhcccCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--
Confidence 489999999999999999999999999999999999999999999999999999999999999999 6999999998
Q ss_pred cceeEEEecCHHHHHhcCCCCeEEEEcCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 015787 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (400)
Q Consensus 133 wpiPI~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~eif~~dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (400)
|||||||+|+++.+++|++|++|+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++.+.|+|+|||+|
T Consensus 77 wpiPi~L~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~dk~~~~~~vfgt~d~~HPgv~~~~~~~g~~~v~G~v 156 (568)
T PRK05537 77 WPIPITLDVSEKFAAGLEIGERIALRDQEGVLLAILTVSDIWEPDKEREAEAVFGTTDPAHPGVNYLHRWAGKFYLGGPL 156 (568)
T ss_pred cceeEEEeCCHHHHhhCCCCCEEEEECCCCcEEEEEEeeeEecCCHHHHHHHHhCCCCcCCccHHHHHhhcCCEEEEeeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999987655999999999
Q ss_pred EEeccCCCCCCCCcccCCHHHHHHHHHhcCCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC
Q 015787 213 EVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292 (400)
Q Consensus 213 ~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~d 292 (400)
++++++.++ +|++||+||+|+|+.|+++||++|+|||||||+|||||+|||. |+|.. +.+||||||+|++|+|
T Consensus 157 ~~~~~~~~~-~f~~~r~tp~e~r~~f~~~gw~~v~afqtrnP~Hr~He~l~~~----a~~~~--d~~lll~p~~G~~k~~ 229 (568)
T PRK05537 157 TGIQLPVHY-DFVQLRLTPAELRARFRKLGWRRVVAFQTRNPLHRAHEELTKR----AAREV--GANLLIHPVVGMTKPG 229 (568)
T ss_pred EEEecCCCC-CchhhcCCHHHHHHHHHHcCCCcEEEEecCCCCcHHHHHHHHH----HHHhc--CCeEEEecCCCCCCCC
Confidence 999988887 5999999999999999999999999999999999999999984 44542 3489999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCch
Q 015787 293 DVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADH 372 (400)
Q Consensus 293 Di~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~ 372 (400)
|+|+++|||||+++++ + ||+++++|++||++|||||||||+||||+|||||||||||||||||||++.++.+|||+|+
T Consensus 230 d~~~~~r~~~~~~~~~-~-~p~~~~~l~~~p~~mryaGpreai~hAi~r~N~Gcth~ivGrdhAg~~~~~~~g~~Y~~~~ 307 (568)
T PRK05537 230 DIDHFTRVRCYEALLD-K-YPPATTLLSLLPLAMRMAGPREALWHAIIRRNYGCTHFIVGRDHAGPGKDSRGKPFYGPYD 307 (568)
T ss_pred CCCHHHHHHHHHHHHH-h-CCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCCCcCcccCCchH
Confidence 9999999999999999 5 9999999999999999999999999999999999999999999999999989999999999
Q ss_pred hhhHhhhCCCCCcceEEEeeeeeccCC
Q 015787 373 GKKVLSMAPGLERLNILPFKVCKASDH 399 (400)
Q Consensus 373 aq~i~~~~~~l~~i~I~p~~~~vYc~~ 399 (400)
||+||++++++.+|+|++|++++||++
T Consensus 308 a~~i~~~~~~~l~i~~~~~~~~~Y~~~ 334 (568)
T PRK05537 308 AQELFAKYADEIGITMVPFKEMVYVQD 334 (568)
T ss_pred HHHHHHhCccccCceEEecceeEEEcC
Confidence 999999997666999999999999986
No 4
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=100.00 E-value=1.5e-108 Score=824.87 Aligned_cols=303 Identities=43% Similarity=0.698 Sum_probs=288.3
Q ss_pred CCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEEcC
Q 015787 81 LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDS 160 (400)
Q Consensus 81 lp~i~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~pwpiPI~L~v~~e~a~~l~~G~~vaL~d~ 160 (400)
||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++ |||||||+|++|++++|++|++|+|+|
T Consensus 1 lp~i~i~~~~~~dlell~~G~fsPL~GFM~~~d~~~V~--~~~rL~~G~~--wpiPi~L~v~~e~~~~l~~g~~v~L~~- 75 (353)
T cd00517 1 LPSVELSERDLCDLEMLAEGGFSPLTGFMTEADYLSVL--EEMRLLDGTL--WPIPIVLDVSEEDAKRLKEGERVALRY- 75 (353)
T ss_pred CCeEEcCHHHHHHHHHHhcCCccCCccCCCHHHHHHHH--HhCcCCCCCC--cCeEEEEeCCHHHHhhcCCCCEEEEeE-
Confidence 79999999999999999999999999999999999999 7999999998 599999999999999999999999999
Q ss_pred CCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCCcccCCHHHHHHHHHh
Q 015787 161 DDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSK 240 (400)
Q Consensus 161 eG~~vAiL~V~eif~~dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~ 240 (400)
+|+++|+|+|+|+|++||++||++||||+|+.||||++++ +.|+|+|||+|++++++.++ +|++||+||+|+|+.|++
T Consensus 76 ~g~~~a~l~v~e~~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~v~~l~~~~~~-~f~~~r~tP~e~R~~f~~ 153 (353)
T cd00517 76 PGQPLAILTVEEIYEPDKEEEAARVFGTTDPHHPGVKKVM-EQGDWLVGGPIEVLELPPFP-DFDQYRLTPAELRALFKE 153 (353)
T ss_pred CCEEEEEEEeeeEecCCHHHHHHHHhCCCCCCChhHHHHH-hcCCEEEeeEEEEeecCCcC-CchhhcCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999876 67999999999999988887 699999999999999999
Q ss_pred cCCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEE
Q 015787 241 RNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVS 320 (400)
Q Consensus 241 ~gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~ 320 (400)
+||++|+|||||||+|||||+|||+ |+|.. .+++||||||+|+||+||+|+++|||||+++++ +|+|+++++|+
T Consensus 154 ~gw~~VvafqtrnP~HraHe~l~~~----a~~~~-~~~~lll~plvG~~k~~d~~~~~r~~~~~~l~~-~y~~~~~~~l~ 227 (353)
T cd00517 154 RGWRRVVAFQTRNPMHRAHEELMKR----AAEKL-LNDGLLLHPLVGWTKPGDVPDEVRMRAYEALLE-EYYLPERTVLA 227 (353)
T ss_pred cCCCeEEEeecCCCCchhhHHHHHH----HHHHc-CCCcEEEEeccCCCCCCCCCHHHHHHHHHHHHH-hCCCCCcEEEE
Confidence 9999999999999999999999984 45541 137899999999999999999999999999999 79999999999
Q ss_pred eCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeeccCC
Q 015787 321 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKASDH 399 (400)
Q Consensus 321 ~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc~~ 399 (400)
+||++||||||||||||||||||||||||||||||||||++ .+|||+|+||+||+.+++..+|+|++|++++||++
T Consensus 228 ~lp~~mryAGPrEallhAiirkN~GcThfIvGrDHAG~g~~---~~yY~~y~aq~i~~~~~~~l~I~~v~~~~~~Yc~~ 303 (353)
T cd00517 228 ILPLPMRYAGPREALWHAIIRKNYGATHFIVGRDHAGVGHP---GDYYGPYDAQEIFKKLAPELGIEPVPFREAAYCPK 303 (353)
T ss_pred eccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCc---cccCCcchhHHHHHhCcccCCceEEecceeEEecC
Confidence 99999999999999999999999999999999999999976 69999999999999996635899999999999986
No 5
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=100.00 E-value=4.2e-107 Score=822.23 Aligned_cols=332 Identities=39% Similarity=0.618 Sum_probs=316.7
Q ss_pred CCCcceeecccCch-hHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCCCeeecc
Q 015787 56 PDGGKLTELIVDKS-LRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMS 134 (400)
Q Consensus 56 PhGg~lv~l~v~~~-~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~pwp 134 (400)
||||+|++|+|+++ ++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++ ||
T Consensus 1 phgg~l~~l~v~~~~~~~~l~~~a~~lp~i~i~~~~l~dlell~~G~fsPL~GfM~~~d~~~V~--~~~rL~~G~~--wp 76 (383)
T TIGR00339 1 PHGGKLVELIVRDPDIEHKLLAEAESLPSITLSDRQLCDLELLGNGAFSPLEGFMNEADYDSVV--EDMRLSDGVL--FS 76 (383)
T ss_pred CCCCcchhcccCchHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--cc
Confidence 89999999999987 6789999999999999999999999999999999999999999999999 6999999998 59
Q ss_pred eeEEEecCHHHHHhcCCCCeEEEEcCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEE
Q 015787 135 VPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEV 214 (400)
Q Consensus 135 iPI~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~eif~~dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~ 214 (400)
|||||+|++|++++|++|++|+|+|++|+++|+|+|+|+|++||+++|++||||+|++||||++++ +.|+|+|||+|++
T Consensus 77 iPi~L~v~~e~~~~l~~g~~v~L~~~eg~~~a~l~v~ev~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~v~G~i~~ 155 (383)
T TIGR00339 77 VPITLDIDDEDADDIKLGDRILLTDDKGQPLAILTIEEVYKPNKTKEAKKVFGTTDPEHPGVVYLN-SAGNYYIGGPIEV 155 (383)
T ss_pred eeEEEeCCHHHHhhCCCCCeEEEECCCCCEEEEEEeeeeecCCHHHHHHHHhCCCCcCCccHHHHH-hcCCEEEEeEEEE
Confidence 999999999999999999999999977999999999999999999999999999999999999976 8999999999999
Q ss_pred eccCCCCCCCCcccCCHHHHHHHHHhcCCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCC
Q 015787 215 LEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDV 294 (400)
Q Consensus 215 l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi 294 (400)
++++.|+ +|++||+||+|+|+.|+++||++|+|||||||+||||++|++. |++.. ..++|||+|++|++|+||+
T Consensus 156 l~~~~~~-~f~~~r~tP~e~r~~f~~~gw~~Vvafqt~nPiHr~H~~l~~~----a~e~l-~~d~lll~P~~g~~k~~~~ 229 (383)
T TIGR00339 156 INLPKFY-DFPRFRFTPAELREEFKERGWDTVVAFQTRNPMHRAHEELTKR----AARSL-PNAGVLVHPLVGLTKPGDI 229 (383)
T ss_pred eecCCCC-CchhhcCCHHHHHHHHHHcCCCeEEEeccCCCCchHHHHHHHH----HHHHc-CCCeEEEEeCCCCCCCCCC
Confidence 9988885 6999999999999999999999999999999999999999974 44431 1378999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchhh
Q 015787 295 PLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGK 374 (400)
Q Consensus 295 ~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~aq 374 (400)
++++|++||+++++ ||+++++++++++|++||||||||++||||+|||||||||||||||||+|+++++.+||++|+||
T Consensus 230 ~~~~R~~~~~~~~~-~~~~~~~~~l~~~~~em~~agpreall~Aiir~nyG~th~IiG~Dhag~g~~~~~~~~Y~~~~aq 308 (383)
T TIGR00339 230 PAEVRMRAYEVLKE-GYPNPERVMLTFLPLAMRYAGPREAIWHAIIRKNYGATHFIVGRDHAGPGSNSKGQDFYGPYDAQ 308 (383)
T ss_pred CHHHHHHHHHHHHh-hCCCCCceEEEecchHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCccccCCCcchHH
Confidence 99999999999998 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCcceEEEeeeeeccCC
Q 015787 375 KVLSMAPGLERLNILPFKVCKASDH 399 (400)
Q Consensus 375 ~i~~~~~~l~~i~I~p~~~~vYc~~ 399 (400)
+||++++++.+|+|++|++++||++
T Consensus 309 ~i~~~~~~~l~I~~v~~~~~~Yc~~ 333 (383)
T TIGR00339 309 ELFEKYKAELGIKIVPFEHVAYCPD 333 (383)
T ss_pred HHHHhCccccCceEEecceeEEEcc
Confidence 9999997666999999999999986
No 6
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.3e-82 Score=627.48 Aligned_cols=335 Identities=62% Similarity=1.085 Sum_probs=323.9
Q ss_pred ceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCC-----Ceeecc
Q 015787 60 KLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDG-----SVVNMS 134 (400)
Q Consensus 60 ~lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG-----~~~pwp 134 (400)
.+.+|+|+++....++++|++||++.|++.+++|+++|++||..||+|||+|.+|.+++||+. |-|| -..|+|
T Consensus 231 ~v~elfv~e~~l~~~~~eae~lp~l~itkvdlqwvqvlaegwatpl~gfmrereylq~mhf~~--lld~khaf~g~in~s 308 (627)
T KOG4238|consen 231 DVHELFVPENKLDHVRAEAETLPSLSITKVDLQWVQVLAEGWATPLKGFMREREYLQVMHFDT--LLDGKHAFDGVINMS 308 (627)
T ss_pred HHHHHcCCccHHHHHHhhhccCCcceeeehhHHHHHHHHhhccccchhHHHHHHHHHHhhhhh--hhccccccccccccc
Confidence 356889999999999999999999999999999999999999999999999999999999874 3455 455899
Q ss_pred eeEEEecCHHHHHhcCCCCeEEEEcCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEE
Q 015787 135 VPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEV 214 (400)
Q Consensus 135 iPI~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~eif~~dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~ 214 (400)
|||+|+++.|++++|..-.+++|.+ +|+.+|+|...|+|++.|+++|.+.|||+++.||.|+++ +++|+|+|||++.+
T Consensus 309 ipivl~~s~e~k~~leg~t~~al~y-~g~~~ail~dpe~fehrkeer~~rq~gt~~~~hp~i~~v-mesg~wl~ggdl~v 386 (627)
T KOG4238|consen 309 IPIVLPVSAEDKTRLEGCTKFALAY-GGRRVAILRDPEFFEHRKEERCSRQWGTTCTKHPHIKMV-MESGDWLVGGDLQV 386 (627)
T ss_pred ccEEEecchhhhhccchhHHHHhhc-CCEEEEEecChHHhhhhhHHHHHHHhCCCCCCChHHHHH-HhcCCeeeccchhh
Confidence 9999999999999999999999998 999999999999999999999999999999999999975 58999999999999
Q ss_pred eccCCCCCCCCcccCCHHHHHHHHHhcCCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCC
Q 015787 215 LEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDV 294 (400)
Q Consensus 215 l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi 294 (400)
++.+.|+|++++||+||.|+|+.|++++++.|+|||.|||+|+||..||++|++.++|.|++++.||||||+||||.||+
T Consensus 387 l~ki~~ndgldqyr~tp~elk~~f~e~nadavfafqlrnpvhnghallm~dt~~~ll~~g~k~pvlllhplggwtkdddv 466 (627)
T KOG4238|consen 387 LEKIRWNDGLDQYRLTPLELKQKFKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDV 466 (627)
T ss_pred heeeeeccchhhhcCCHHHHHHHHHhhCcceEEEeeecCccccchhhHhHhHHHHHHHhcccCceEEEecCCCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchhh
Q 015787 295 PLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGK 374 (400)
Q Consensus 295 ~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~aq 374 (400)
|.++||++++++++++++.|+.+++++||++|.||||.|++|||..|.-.|++|+|||||+||+.+|..+.|+|++.++.
T Consensus 467 pl~~rmkqh~avl~e~vldpe~tvvaifpspmmyagptevqwh~rsrm~ag~~~yivgrdpagm~~pe~~~dlye~thga 546 (627)
T KOG4238|consen 467 PLDWRMKQHAAVLEEGVLDPESTVVAIFPSPMMYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGA 546 (627)
T ss_pred cchhhhHHHHHHHHhccCCccceEEEEcCCchhcCCchhhhhhHHHHhhccCeeEEeccCcCCCCCCCCCccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCcceEEEeeeeeccC
Q 015787 375 KVLSMAPGLERLNILPFKVCKASD 398 (400)
Q Consensus 375 ~i~~~~~~l~~i~I~p~~~~vYc~ 398 (400)
++++|+||+..++|+||++++|+.
T Consensus 547 kvlsmapgl~~l~i~pfrvaay~k 570 (627)
T KOG4238|consen 547 KVLSMAPGLTSLEIIPFRVAAYNK 570 (627)
T ss_pred eeeeecCCcceeeeeeeehhhhhh
Confidence 999999999999999999999974
No 7
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=100.00 E-value=1.8e-66 Score=490.20 Aligned_cols=163 Identities=37% Similarity=0.623 Sum_probs=137.3
Q ss_pred CCcccCCHHHHHHHHHhcCCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHH
Q 015787 224 LDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQH 303 (400)
Q Consensus 224 f~~~r~tP~e~R~~f~~~gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~y 303 (400)
|++||+||+|+|+.|+++||++|+|||||||+|||||+|+|. |+|.. .++||||||||++|+||+|+++|++||
T Consensus 1 f~~~r~tP~e~r~~~~~~gw~~VvafqtrnPlHraHe~l~~~----a~e~~--~~~lll~plvG~~k~~d~~~~~r~~~~ 74 (215)
T PF01747_consen 1 FRRYRLTPAETRELFKEKGWRRVVAFQTRNPLHRAHEYLMRR----ALEKA--GDGLLLHPLVGPTKPGDIPYEVRVRCY 74 (215)
T ss_dssp TCCTB--HHHHHHHHHHTT-SSEEEEEESS---HHHHHHHHH----HHHHH--TSEEEEEEBESB-STTSCCHHHHHHHH
T ss_pred CcchhCCHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHH----HHHHh--cCcEEEEeccCCCCcCCCCHHHHHHHH
Confidence 679999999999999999999999999999999999999984 45542 279999999999999999999999999
Q ss_pred HHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCC
Q 015787 304 EKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGL 383 (400)
Q Consensus 304 e~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l 383 (400)
+++++ +|||+++++|++||++||||||||||||||||||||||||||||||||+| +|||+|+||+||++++++
T Consensus 75 ~~~~~-~y~p~~~v~l~~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdhAg~g------~~Y~~~~a~~i~~~~~~e 147 (215)
T PF01747_consen 75 EALID-NYFPKNRVLLSPLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVG------DFYDPYEAQEIFDEYAGE 147 (215)
T ss_dssp HHHHH-HCSSTTGEEEEBBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-SC------BSS-TTHHHHHHHHHHHH
T ss_pred HHHHH-HhCCCCcEEEeccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcCCCcc------ccCCccHHHHHHHcCccc
Confidence 99999 59999999999999999999999999999999999999999999999999 999999999999997555
Q ss_pred CcceEEEeeeeeccCC
Q 015787 384 ERLNILPFKVCKASDH 399 (400)
Q Consensus 384 ~~i~I~p~~~~vYc~~ 399 (400)
.+|+|++|++++||++
T Consensus 148 l~I~~v~~~~~~Yc~~ 163 (215)
T PF01747_consen 148 LGIEPVPFPEMVYCPK 163 (215)
T ss_dssp CTSEEEE---EEEETT
T ss_pred CCceEEecceEEEEcC
Confidence 6999999999999986
No 8
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-67 Score=517.65 Aligned_cols=394 Identities=46% Similarity=0.600 Sum_probs=375.2
Q ss_pred CccccccccCCCCCCCCCccCCcccccCCCCCCCcCccccccccccccccCCccCCCCcceeecccCchhHHHHHHHhcc
Q 015787 1 MATMSTLFAKTPLPSRSLSKSNISHFAPPLTSLSFKQKTTAPHFKLRSIRAGLIEPDGGKLTELIVDKSLRDVRKREAAT 80 (400)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~PhGg~lv~l~v~~~~~~~l~~ea~~ 80 (400)
|+||++++.+||+.|.++.+..+ +.+...+++....++.. +++...+++|.|.||+|++++|++-++...++|+++
T Consensus 1 ~~ss~~~~~ntp~~~~~l~~~l~--~~~~~~~l~~~~~s~~~--~~lsv~s~li~Pdgg~l~el~v~e~k~~~kkae~~d 76 (466)
T KOG0636|consen 1 MASSDILVWNTPFQSCPLELILN--SSPLTGFLSENSYSSVV--RRLSVKSGLIIPDGGKLVELFVNEIKRRVKKAEAED 76 (466)
T ss_pred CCccceeecCCccccCchhhhcc--CCCCcceeccccchhhe--eeeeccceeeccCCchHHHhhccccchhhhhhhhcc
Confidence 89999999999999999988887 55555556655555544 778888999999999999999999999999999999
Q ss_pred CCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEEcC
Q 015787 81 LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDS 160 (400)
Q Consensus 81 lp~i~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~pwpiPI~L~v~~e~a~~l~~G~~vaL~d~ 160 (400)
+|.|.|+..|+.|...+.+||.|||.|||.+.+|.+.+||+..||.||++.||++||+|+++++++..+....+|.|++.
T Consensus 77 ~p~i~l~~vdl~w~hv~segwasplrGfmre~e~lqtlhfn~~~l~~GS~vnmslPivlaidd~~K~~ig~s~~v~l~~~ 156 (466)
T KOG0636|consen 77 DPRIKLNTVDLEWVHVLSEGWASPLRGFMRESEFLQTLHFNSLRLVDGSVVNMSLPIVLAIDDDQKTPIGLSLEVQLVQS 156 (466)
T ss_pred CCceeeeeeeeEEeeecchhhhccccCcccchhHHhheeccceeecCceEEEeeccEEEecCcccccccccceeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCccccCCHH-HHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCCcccCCHHHHHHHHH
Q 015787 161 DDNVVAILNDIEIYKHPKE-ERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFS 239 (400)
Q Consensus 161 eG~~vAiL~V~eif~~dk~-~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~ 239 (400)
+|.++|++...++|++.++ ++|++.|||+-+.||.|..+....++|+++|+++++.+.+|+|+.+.|+|.|.++|..+.
T Consensus 157 d~~~i~~lrn~~~~aH~e~t~R~Art~gatv~~~P~V~~t~~~~~d~l~~~~v~v~~~~rY~dGl~~~~L~P~amR~e~~ 236 (466)
T KOG0636|consen 157 DGNPIAILRNPMHRAHRELTVRAARTWGATVLIHPVVGETKPGDIDHLTRVRVYVLIPIRYPDGLARLSLLPLAMRMEGD 236 (466)
T ss_pred CCCeeeeecCHHhhhchHHHHHHHHHhCCccccccccceecCCCCcceeeeEEEEEEeeecCCchhhhcCChHHHhhhcc
Confidence 9999999999999999999 999999999999999999988889999999999999999999999999999999999999
Q ss_pred hcCCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEE
Q 015787 240 KRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (400)
Q Consensus 240 ~~gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l 319 (400)
++++..+++||.|||.|.+|..++..+++..++++|+++.+++|||.|.||.+|||..+||++++...++ .|.|.++++
T Consensus 237 r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v~gytke~dipl~~~m~q~~~~~ED-v~dP~~tv~ 315 (466)
T KOG0636|consen 237 REAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLVEGYTKEDDIPLVPFMMQTYLPDED-VYDPEDTVV 315 (466)
T ss_pred hhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhhhhcccccCCcccHHHhhhccchhh-hcCccceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999998886 899999999
Q ss_pred EeCCCCCCCCC-hhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchh--hhHhhhCCCCCcceEEEeeeeec
Q 015787 320 SIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHG--KKVLSMAPGLERLNILPFKVCKA 396 (400)
Q Consensus 320 ~~lp~~mryAG-PREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~a--q~i~~~~~~l~~i~I~p~~~~vY 396 (400)
+++|.+|.|+| |.|..||+-.|.|-|++..|||||.+|+|+|.++++||++.++ +++++++++++.++|.+|+.++|
T Consensus 316 si~~~~l~~sGt~~~~r~~v~arI~e~~sy~~V~r~~~~~g~P~~kq~~~~a~~g~~k~vLsmAp~le~Lni~~~R~aa~ 395 (466)
T KOG0636|consen 316 SIFTRTLNISGTELRRRLRVGARIPEWFSYPEVVRILRGSGPPTEKQGFYDADHGATKKVLSMAPLLERLNILGFRVAAY 395 (466)
T ss_pred eccccceeecCCcceeeeeeccccCcccccceeeechhhcCCCcccCCceecCCccchheeccchhhHHhccCCeeEEEE
Confidence 99999999999 9999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred cCC
Q 015787 397 SDH 399 (400)
Q Consensus 397 c~~ 399 (400)
...
T Consensus 396 ~~~ 398 (466)
T KOG0636|consen 396 DKT 398 (466)
T ss_pred ecc
Confidence 753
No 9
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=100.00 E-value=6.3e-55 Score=395.28 Aligned_cols=159 Identities=40% Similarity=0.681 Sum_probs=139.4
Q ss_pred cCCCCc-ceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCCCeee
Q 015787 54 IEPDGG-KLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (400)
Q Consensus 54 i~PhGg-~lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~p 132 (400)
|.|||| +||||+|+++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 1 i~PhGG~~Lv~~~~~~~~~~~~~~~a~~lp~i~l~~~~~~dleli~~G~fsPL~GFM~~~dy~~V~--~~~rL~~G~~-- 76 (160)
T PF14306_consen 1 IEPHGGKKLVNLVVPEDEREELKEEAESLPSIELSKRQLCDLELIANGAFSPLTGFMNEEDYESVL--ETMRLPDGTL-- 76 (160)
T ss_dssp ---TTSSS--BHBHHTGGHHHHHHHHTTSEEEEE-HHHHHHHHHHHTTTTTT-SEE--HHHHHHHH--HHSBETTSSB--
T ss_pred CcCCCCCcccccccCHHHHHHHHHHHhhCCeEEeCHHHHHHHHHHhcCCCCCCccccCHHHHHHHH--hhCCcCCCCE--
Confidence 689999 99999999999999999999999999999999999999999999999999999999999 6999999999
Q ss_pred cceeEEEecCHHHHHhcCCCCeEEEEcCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 015787 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (400)
Q Consensus 133 wpiPI~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~eif~~dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (400)
|||||||+|++|+++++++|++|+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++ ++|+|+|||+|
T Consensus 77 wpiPI~L~v~~e~~~~l~~G~~v~L~~~~G~~~a~l~V~evy~~dk~~ea~~vfgT~d~~HPgV~~~~-~~g~~~vgG~i 155 (160)
T PF14306_consen 77 WPIPIVLDVSEEEAKSLKEGDKVALRDPEGKPVAILEVEEVYEPDKEEEAEKVFGTTDPAHPGVAKLY-ERGDYYVGGKI 155 (160)
T ss_dssp --S---EEECHHHHTTCTTTSEEEEEETTTEEEEEEEEEEEEEECHHHHHHHHHSS-TTTSHHHHHHH-TS-SEEEEEEE
T ss_pred EeEEEEEECCHHHHHhccCCCEEEEECCCCCEEEEEEeCeeecCCHHHHHHHhhCCCCCCChHHHHHH-hcCCEEEeeEE
Confidence 59999999999999999999999999988999999999999999999999999999999999999977 89999999999
Q ss_pred EEecc
Q 015787 213 EVLEP 217 (400)
Q Consensus 213 ~~l~~ 217 (400)
+++++
T Consensus 156 ~~l~~ 160 (160)
T PF14306_consen 156 EVLNR 160 (160)
T ss_dssp EESS-
T ss_pred EEEeC
Confidence 99874
No 10
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-46 Score=368.29 Aligned_cols=291 Identities=23% Similarity=0.289 Sum_probs=269.5
Q ss_pred ChhhHHHHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEEcCCCcEEE
Q 015787 87 TKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVA 166 (400)
Q Consensus 87 ~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~pwpiPI~L~v~~e~a~~l~~G~~vaL~d~eG~~vA 166 (400)
++.++|+++++.+ +||++||+++.+|.+|+ .||++|+. |.+|+.+++.+-.+..++.+.+.++-- +...++
T Consensus 11 tp~~~~~l~~~l~--~~~~~~~l~~~~~s~~~----~~lsv~s~--li~Pdgg~l~el~v~e~k~~~kkae~~-d~p~i~ 81 (466)
T KOG0636|consen 11 TPFQSCPLELILN--SSPLTGFLSENSYSSVV----RRLSVKSG--LIIPDGGKLVELFVNEIKRRVKKAEAE-DDPRIK 81 (466)
T ss_pred CccccCchhhhcc--CCCCcceeccccchhhe----eeeeccce--eeccCCchHHHhhccccchhhhhhhhc-cCCcee
Confidence 8899999999999 99999999999999996 68999999 599999999999999999999999864 566999
Q ss_pred EEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEec-cCCCCCCCCcccCCHHHHHHHHHhcCCCc
Q 015787 167 ILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLE-PIKYHDGLDRFRLSPAQLRDEFSKRNADA 245 (400)
Q Consensus 167 iL~V~eif~~dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~-~~~~~~~f~~~r~tP~e~R~~f~~~gw~~ 245 (400)
+.+|+..|.+.+.++++++|+ .++.||..-+++.=.+.++++|.++-++ |+.+ +++..+.+|.+.+..++-..|+.
T Consensus 82 l~~vdl~w~hv~segwasplr-Gfmre~e~lqtlhfn~~~l~~GS~vnmslPivl--aidd~~K~~ig~s~~v~l~~~d~ 158 (466)
T KOG0636|consen 82 LNTVDLEWVHVLSEGWASPLR-GFMRESEFLQTLHFNSLRLVDGSVVNMSLPIVL--AIDDDQKTPIGLSLEVQLVQSDG 158 (466)
T ss_pred eeeeeeEEeeecchhhhcccc-CcccchhHHhheeccceeecCceEEEeeccEEE--ecCcccccccccceeEEEecCCC
Confidence 999999999999999999997 4788999999888889999999999999 5555 68899999999999999999999
Q ss_pred eEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 015787 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSP 325 (400)
Q Consensus 246 VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~ 325 (400)
+++||+|||+||+|.++.. |+|.+.| +-.++||+||.+|++|+++.+|++.|+..+. -||..-..++++|++
T Consensus 159 ~~i~~lrn~~~~aH~e~t~---R~Art~g---atv~~~P~V~~t~~~~~d~l~~~~v~v~~~~--rY~dGl~~~~L~P~a 230 (466)
T KOG0636|consen 159 NPIAILRNPMHRAHRELTV---RAARTWG---ATVLIHPVVGETKPGDIDHLTRVRVYVLIPI--RYPDGLARLSLLPLA 230 (466)
T ss_pred CeeeeecCHHhhhchHHHH---HHHHHhC---CccccccccceecCCCCcceeeeEEEEEEee--ecCCchhhhcCChHH
Confidence 9999999999999999943 5677876 7799999999999999999999999998877 689999999999999
Q ss_pred CCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeecc
Q 015787 326 MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKAS 397 (400)
Q Consensus 326 mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc 397 (400)
||++|+|||.||||+|||||+.|||+||||||+|....+-+||+||+||..+..|..+.+|.++|+..+.|-
T Consensus 231 mR~e~~r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v~gytke~dipl~~~m~q~~~ 302 (466)
T KOG0636|consen 231 MRMEGDREAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLVEGYTKEDDIPLVPFMMQTYL 302 (466)
T ss_pred HhhhcchhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhhhhcccccCCcccHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999965668999999888773
No 11
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=98.63 E-value=1.3e-07 Score=81.09 Aligned_cols=95 Identities=21% Similarity=0.227 Sum_probs=68.7
Q ss_pred eeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCC----CCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 015787 250 QLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK----ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSP 325 (400)
Q Consensus 250 QtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK----~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~ 325 (400)
=+-||+|+||.+|++.| .+.+ ++.++|.|.....+ ...++.+.|++..+++.+ ..+ .+++++
T Consensus 6 G~Fdp~H~GH~~ll~~a----~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~----~~~----~v~~~~ 71 (143)
T cd02039 6 GRFEPFHLGHLKLIKEA----LEEA--LDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILK----DRL----KVVPVD 71 (143)
T ss_pred eccCCcCHHHHHHHHHH----HHHc--CCceEEEEcCCChhhcccccCCCHHHHHHHHHHhcc----CCc----EEEEEe
Confidence 38999999999998744 4442 25688888777654 378999999999998764 112 223344
Q ss_pred CCCCChhHHH-HHHHHHHhcCCcEEEecCCCCCC
Q 015787 326 MHYAGPTEVQ-WHAKARINAGANFYIVGRDPAGM 358 (400)
Q Consensus 326 mryAGPREal-lHAiiRkNyGcThfIVGRDHAGv 358 (400)
+.+..+..+. +...+.++++|+++++|.|+..-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~v~G~d~~~~ 105 (143)
T cd02039 72 FPEVKILLAVVFILKILLKVGPDKVVVGEDFAFG 105 (143)
T ss_pred cChhhccCHHHHHHHHHHHcCCcEEEECCccccC
Confidence 4444555554 77778889999999999999843
No 12
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=97.91 E-value=0.00033 Score=69.96 Aligned_cols=142 Identities=14% Similarity=0.058 Sum_probs=89.1
Q ss_pred CHHHHHHHHH-hcCCCceEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHH
Q 015787 230 SPAQLRDEFS-KRNADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVL 307 (400)
Q Consensus 230 tP~e~R~~f~-~~gw~~VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll 307 (400)
...-+++..+ +++.++|+|.. +-||+|+||..+++. |++.- .-..+++.| .+..-++.+.|++..+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~FDPiH~GHl~ii~~----a~~~~-d~~~V~i~~----~~~~~~~~e~R~~ml~~ai 169 (297)
T cd02169 99 IEDYLKNLPKPDQPGKKIAAIVMNANPFTLGHRYLVEK----AAAEN-DWVHLFVVS----EDKSLFSFADRFKLVKKGT 169 (297)
T ss_pred HHHHHHHHHhhccCCCceEEEEecCCCCchHHHHHHHH----HHhhC-CeEEEEEEc----CCCCCCCHHHHHHHHHHHh
Confidence 4455556666 78899999999 899999999999874 44441 112333333 3567899999999999999
Q ss_pred HcCCCCCCcEEEEeCCCCCCCC--------------------ChhHHHHHHHHHHhcCCcEEEecCCCC-CCCCCCCCCC
Q 015787 308 EDGVLDPETTVVSIFPSPMHYA--------------------GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPVEKRD 366 (400)
Q Consensus 308 ~~~y~p~~~~~l~~lp~~mryA--------------------GPREallHAiiRkNyGcThfIVGRDHA-GvG~~~~~~~ 366 (400)
++ +|. -.+++.-.+..-|+ .|.+= .+ ++.+-++|.+++||-|+. |-+ .
T Consensus 170 ~~--~~~-v~v~~~~~l~v~~~~~~~~~~~~~~~~~~~~a~lsa~~F-i~-iL~~~l~~~~ivvG~Df~FG~~------r 238 (297)
T cd02169 170 KH--LKN-VTVHSGGDYIISSATFPSYFIKEQDVVIKAQTALDARIF-RK-YIAPALNITKRYVGEEPFSRVT------A 238 (297)
T ss_pred CC--CCC-EEEEecCCeeeccccChhhhcCChhHHHHHHhcCCHHHH-HH-HHHHHcCCcEEEEcCCCCCCCc------c
Confidence 83 343 22222222222221 34443 46 888889999999999974 333 1
Q ss_pred CCCCchhhhHhhhCCCCCcceEEEeeeeec
Q 015787 367 LYDADHGKKVLSMAPGLERLNILPFKVCKA 396 (400)
Q Consensus 367 ~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vY 396 (400)
- .. ..++...... +++++.++...+
T Consensus 239 ~---G~-~~l~~~~~~~-gf~v~~v~~~~~ 263 (297)
T cd02169 239 I---YN-QTMQEELLSP-AIEVIEIERKKY 263 (297)
T ss_pred h---hH-HHHHHhcccC-CCEEEEeccccc
Confidence 1 11 3344443322 677777665544
No 13
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=96.82 E-value=0.0099 Score=55.43 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=62.0
Q ss_pred Eee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCC------CcEEEE
Q 015787 248 AFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDP------ETTVVS 320 (400)
Q Consensus 248 AfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~------~~~~l~ 320 (400)
|.. +.||+|+||..+.+.+ ++.- ...-+++.|- +..-++.+.|++..+..+++ .|+ +...+.
T Consensus 3 ~~~~~~DPiH~GHl~i~~~a----~~~~-d~~~V~v~p~----~~~~~s~e~R~~Mi~~a~~~--~~~v~v~~~~~~~v~ 71 (182)
T smart00764 3 AIVMNANPFTLGHRYLVEQA----AAEC-DWVHLFVVSE----DASLFSFDERFALVKKGTKD--LDNVTVHSGSDYIIS 71 (182)
T ss_pred eEEECCCCCCHHHHHHHHHH----HHHC-CceEEEEEeC----CCCCCCHHHHHHHHHHHhcc--CCCEEEEecCCceec
Confidence 444 7899999999998743 4431 1123444443 55678999999999999873 232 112233
Q ss_pred eCCCCCCC-----------C--ChhHHHHHHHHHHhcCCcEEEecCCCC
Q 015787 321 IFPSPMHY-----------A--GPTEVQWHAKARINAGANFYIVGRDPA 356 (400)
Q Consensus 321 ~lp~~mry-----------A--GPREallHAiiRkNyGcThfIVGRDHA 356 (400)
.+-.+-.| | .|.+=+ + ++.+.+++.|++||.|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi-~-~L~~~l~~~~ivvG~df~ 118 (182)
T smart00764 72 RATFPSYFLKEQDVVIKSQTTLDLRIFR-K-YIAPALGITHRYVGEEPF 118 (182)
T ss_pred cccChhhhcCchhHHHHHHhcCCHHHHH-H-HHHHHcCceEEEEcCCCC
Confidence 33334444 2 454443 5 578889999999999965
No 14
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=96.25 E-value=0.039 Score=49.71 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=56.1
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAG 330 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAG 330 (400)
|-||+|.||..+.+. |.+.. +-+++-|..-+.|..-++.+.|++-.+..+++ .| .+.+..+.
T Consensus 7 sFdP~H~GHl~l~~~----a~~~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~~--~~--~~~v~~~e------- 68 (153)
T cd02163 7 SFDPITNGHLDIIER----ASKLF---DEVIVAVAVNPSKKPLFSLEERVELIREATKH--LP--NVEVDGFD------- 68 (153)
T ss_pred ccCCCCHHHHHHHHH----HHHHC---CEEEEEEcCCCCCCCCCCHHHHHHHHHHHHcC--CC--CEEecCCc-------
Confidence 789999999999863 45552 56777776555577779999999999988873 33 33343332
Q ss_pred hhHHHHHHHHHHhcCCcEEEecCC
Q 015787 331 PTEVQWHAKARINAGANFYIVGRD 354 (400)
Q Consensus 331 PREallHAiiRkNyGcThfIVGRD 354 (400)
. +-.-.-+-+++++||+|-|
T Consensus 69 ---s-~t~~~l~~l~~~~~i~G~d 88 (153)
T cd02163 69 ---G-LLVDFARKHGANVIVRGLR 88 (153)
T ss_pred ---c-hHHHHHHHcCCCEEEECCc
Confidence 1 1112235779999999955
No 15
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=95.75 E-value=0.07 Score=49.32 Aligned_cols=94 Identities=23% Similarity=0.281 Sum_probs=59.3
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCC-C-CCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-K-ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHY 328 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~t-K-~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mry 328 (400)
+-||+|.||..+++. |.+.. ..+-+++.|-.... | ..-.+.+.|++-.+.+++. .| .+.+. +...+-
T Consensus 7 sFdP~H~GH~~~~~~----a~~~~-~~d~v~~~~~~~~~~k~~~~~~~~~R~~m~~~~~~~--~~--~i~v~--~~e~~~ 75 (192)
T cd02165 7 SFDPPHLGHLAIAEE----ALEEL-GLDRVLLLPSANPPHKPPKPASFEHRLEMLKLAIED--NP--KFEVS--DIEIKR 75 (192)
T ss_pred CCCCCCHHHHHHHHH----HHHHc-CCCEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHcC--CC--CEEEe--HHHHhC
Confidence 789999999999874 44431 12457777765544 3 3779999999999988872 23 34443 444445
Q ss_pred CChhHHH--HHHHHHHhcC-Cc-EEEecCCCC
Q 015787 329 AGPTEVQ--WHAKARINAG-AN-FYIVGRDPA 356 (400)
Q Consensus 329 AGPREal--lHAiiRkNyG-cT-hfIVGRDHA 356 (400)
.||.-.+ +-.+ ++.|+ ++ .||+|-|--
T Consensus 76 ~~~~~t~~tl~~l-~~~~p~~~~~~liG~D~l 106 (192)
T cd02165 76 DGPSYTIDTLEEL-RERYPNAELYFIIGSDNL 106 (192)
T ss_pred CCCCCHHHHHHHH-HHhccCCCEEEEEcHHHh
Confidence 5554433 3333 34454 55 678888753
No 16
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=95.69 E-value=0.19 Score=46.27 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=59.9
Q ss_pred eEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEe--ccc----CCCC--CCCCChHHHHHHHHHHHHcCCCCCCcE
Q 015787 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH--PLG----GYTK--ADDVPLSWRMKQHEKVLEDGVLDPETT 317 (400)
Q Consensus 246 VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~--Plv----G~tK--~dDi~~~~R~r~ye~ll~~~y~p~~~~ 317 (400)
|+++=+-+++|+||..|++.|.+.|-+.++. .+++. |-- .+.+ .--.+.+.|++-.+.+ + =+.+
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~--~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l---~---vd~v 73 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLP--SAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL---G---VDYL 73 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCC--eEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc---C---CCEE
Confidence 6777789999999999998776666554322 23332 211 1112 2246788898866643 1 2333
Q ss_pred EEEeCCCCCCCC--ChhHHHHHHHHHHhcCCcEEEecCCCC
Q 015787 318 VVSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPA 356 (400)
Q Consensus 318 ~l~~lp~~mryA--GPREallHAiiRkNyGcThfIVGRDHA 356 (400)
+ ++|....++ -| |....-++- +.++.+++||.|+.
T Consensus 74 ~--~~~f~~~~~~~s~-~~Fi~~il~-~~~~~~ivvG~Df~ 110 (180)
T cd02064 74 L--VLPFDKEFASLSA-EEFVEDLLV-KLNAKHVVVGFDFR 110 (180)
T ss_pred E--EeCCCHHHHcCCH-HHHHHHHHh-hcCCeEEEEccCCC
Confidence 3 345544334 44 444455554 44999999999986
No 17
>PRK13670 hypothetical protein; Provisional
Probab=95.46 E-value=0.082 Score=54.87 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=58.5
Q ss_pred ceEEeee-CCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCC---CCCCChHHHHHHHHHHHHcCCCCCCcEEEE
Q 015787 245 AVFAFQL-RNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK---ADDVPLSWRMKQHEKVLEDGVLDPETTVVS 320 (400)
Q Consensus 245 ~VvAfQt-RNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK---~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~ 320 (400)
+|+|.-+ -||+|+||.++++.+++.+-+ + ..+.|-|.- -.+ +--++.+.|.+... +. --|-++
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~-~---~~~~Vmp~~-f~qrg~p~i~~~~~R~~~a~---~~---GvD~vi-- 68 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNA-D---VTIAVMSGN-FVQRGEPAIVDKWTRAKMAL---EN---GVDLVV-- 68 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhC-C---CcEEEecHH-HhCCCCCCCCCHHHHHHHHH---Hc---CCCEEE--
Confidence 4677774 799999999999876554433 2 233333432 112 22466677776443 32 334443
Q ss_pred eCCCCCCCCChhHHHHHH--HHHHhcCCcEEEecCCCCC
Q 015787 321 IFPSPMHYAGPTEVQWHA--KARINAGANFYIVGRDPAG 357 (400)
Q Consensus 321 ~lp~~mryAGPREallHA--iiRkNyGcThfIVGRDHAG 357 (400)
.+|..+--..|.+=+-.| ++ +.+||++++||-|..+
T Consensus 69 elpf~~a~~sae~F~~~aV~iL-~~l~v~~lv~G~e~g~ 106 (388)
T PRK13670 69 ELPFLYSVQSADFFAEGAVSIL-DALGVDSLVFGSESGD 106 (388)
T ss_pred EeCCchHhCCHHHHHHhHHHHH-HHcCCCEEEEcCCCCC
Confidence 356663333443333332 67 8899999999999444
No 18
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=95.18 E-value=0.18 Score=47.01 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=54.5
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccC---CCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG---YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG---~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mr 327 (400)
+-||+|.||..+++. |++.. +-|+|.+-.. .++..-++.+.|++-.+..+.+.=++.+++.+.++|-..
T Consensus 7 rF~P~H~GHl~~i~~----a~~~~---~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~- 78 (181)
T cd02168 7 RFQPFHNGHLAVVLI----ALEKA---KKVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHL- 78 (181)
T ss_pred ccCCCCHHHHHHHHH----HHHHC---CeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCC-
Confidence 567999999999873 45552 3344432122 355677899999999998887544567788777776631
Q ss_pred CCChhHHHHHHHHH
Q 015787 328 YAGPTEVQWHAKAR 341 (400)
Q Consensus 328 yAGPREallHAiiR 341 (400)
..+..|-+-++
T Consensus 79 ---~~~~~W~~~v~ 89 (181)
T cd02168 79 ---YSDNLWLAEVQ 89 (181)
T ss_pred ---CChHHHHHHHH
Confidence 35778886665
No 19
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=95.18 E-value=0.32 Score=44.30 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=59.4
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEec-ccCC--CCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP-LGGY--TKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~P-lvG~--tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mr 327 (400)
+-||+|.||..+++. |++.. +-|+|.. --.. ++..-++.+.|++-.+..+.+.-++.+++.+.+++..
T Consensus 7 ~FdP~H~GHl~~i~~----a~~~~---d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~-- 77 (163)
T cd02166 7 RFQPFHLGHLKVIKW----ILEEV---DELIIGIGSAQESHTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDI-- 77 (163)
T ss_pred ccCCCCHHHHHHHHH----HHHHC---CEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCC--
Confidence 568999999999874 55552 4455422 2111 1334478899999999877743356778888666533
Q ss_pred CCChhHHHHHHHHHHhcC-CcEEEecC
Q 015787 328 YAGPTEVQWHAKARINAG-ANFYIVGR 353 (400)
Q Consensus 328 yAGPREallHAiiRkNyG-cThfIVGR 353 (400)
+ .+..|-+-++..-. ++.+++|+
T Consensus 78 ~---~~~~w~~~v~~~vp~~div~~g~ 101 (163)
T cd02166 78 E---RNSLWVSYVESLTPPFDVVYSGN 101 (163)
T ss_pred C---chHHHHHHHHHHCCCCCEEEECc
Confidence 2 34678888876665 55566675
No 20
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=94.90 E-value=0.25 Score=44.49 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=56.1
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAG 330 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAG 330 (400)
|-||+|.||..+.+. |.+.. +-|++-|..-+.|...++.+.|++-.+..+++ +| .+.+..++ +
T Consensus 7 sFdP~H~GHl~l~~~----a~~~~---d~v~~~~~~~p~k~~~~~~~~R~~m~~~a~~~--~~--~~~v~~~e------~ 69 (155)
T TIGR01510 7 SFDPVTNGHLDIIKR----AAALF---DEVIVAVAKNPSKKPLFSLEERVELIKDATKH--LP--NVRVDVFD------G 69 (155)
T ss_pred ecCCCcHHHHHHHHH----HHHhC---CEEEEEEcCCCCCCCCcCHHHHHHHHHHHHhh--CC--CeEEcCcc------c
Confidence 789999999999863 45553 66777777556677789999999999988872 34 44555444 2
Q ss_pred hhHHHHHHHHHHhcCCcEEEecCC
Q 015787 331 PTEVQWHAKARINAGANFYIVGRD 354 (400)
Q Consensus 331 PREallHAiiRkNyGcThfIVGRD 354 (400)
. ..+ .-+-+...+||.|-|
T Consensus 70 y---t~d--t~~~l~~~~~i~G~~ 88 (155)
T TIGR01510 70 L---LVD--YAKELGATFIVRGLR 88 (155)
T ss_pred h---HHH--HHHHcCCCEEEecCc
Confidence 1 122 223456788887744
No 21
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=94.71 E-value=0.38 Score=43.54 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=55.9
Q ss_pred eeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCC
Q 015787 250 QLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYA 329 (400)
Q Consensus 250 QtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryA 329 (400)
=|-||+|.||..+.+ .|.+.+ +-|++-|..-+.|...++.+-|++-.+..++ .+| .+.+..+. -|
T Consensus 8 GsFdP~H~GHl~~~~----~a~~~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~--~~~--~v~v~~~e---~~- 72 (159)
T PRK00168 8 GSFDPITNGHLDIIE----RASRLF---DEVIVAVAINPSKKPLFSLEERVELIREATA--HLP--NVEVVSFD---GL- 72 (159)
T ss_pred eecCCCCHHHHHHHH----HHHHHC---CEEEEEECCCCCCCCCCCHHHHHHHHHHHHc--CCC--CEEEecCC---cc-
Confidence 389999999999976 455653 5676655544556778999999999998787 333 34454443 11
Q ss_pred ChhHHHHHHHHHHhcCCcEEEecCC
Q 015787 330 GPTEVQWHAKARINAGANFYIVGRD 354 (400)
Q Consensus 330 GPREallHAiiRkNyGcThfIVGRD 354 (400)
..+ .-+-+++++|+.|=|
T Consensus 73 -t~~------~~~~~~~~~~~~gl~ 90 (159)
T PRK00168 73 -LVD------FAREVGATVIVRGLR 90 (159)
T ss_pred -HHH------HHHHcCCCEEEecCc
Confidence 111 225678999987743
No 22
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=94.16 E-value=0.73 Score=41.89 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=54.9
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCC---CCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT---KADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~t---K~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mr 327 (400)
+-||+|.||..+++. |++. ++-|+|.|---.. |..-++.+.|++-.+..+++ . .++.+..++.+..
T Consensus 7 ~F~P~H~GHl~li~~----a~~~---~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~--~--~~~~v~~~~~~d~ 75 (158)
T cd02167 7 KFAPLHTGHVYLIYK----ALSQ---VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPD--Q--ENIVVHTLNEPDI 75 (158)
T ss_pred ccCCCCHHHHHHHHH----HHHH---CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--C--CCEEEEeCCCCCC
Confidence 678999999999874 4554 2667776643322 23368999999998887762 2 3566777777554
Q ss_pred C-CChhHHHHHHHHHHhcC
Q 015787 328 Y-AGPTEVQWHAKARINAG 345 (400)
Q Consensus 328 y-AGPREallHAiiRkNyG 345 (400)
. --..-..|=+.|+...+
T Consensus 76 ~~~~~~w~~w~~~v~~~v~ 94 (158)
T cd02167 76 PEYPNGWDIWSNRVKTLIA 94 (158)
T ss_pred CCCchhHHHHHHHHHHHHh
Confidence 3 22234455777776655
No 23
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=94.06 E-value=0.27 Score=47.44 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=63.6
Q ss_pred ceEEee--eCCCCchhHHHHHHHHHHHHHHhcCCCCc-----EEEecc-cCCCCCCCCChHHHHHHHHHHHHcCCCCCCc
Q 015787 245 AVFAFQ--LRNPVHNGHALLMTDTRRRLLEMGYQNPI-----LLLHPL-GGYTKADDVPLSWRMKQHEKVLEDGVLDPET 316 (400)
Q Consensus 245 ~VvAfQ--tRNPlHRaHe~l~r~~~~~ale~~~~~~~-----Lll~Pl-vG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~ 316 (400)
+|+++. |-||+|.||..+.+.|++ +++. +. +++.|. ....|++-.+.+.|++-.+..+++ .| .
T Consensus 22 ~~v~i~GGSFdP~H~gHl~ia~~a~~-~l~~----d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~--~ 92 (236)
T PLN02945 22 RVVLVATGSFNPPTYMHLRMFELARD-ALMS----EGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACED--SD--F 92 (236)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHH-HHhh----cCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--CC--C
Confidence 477776 899999999999875543 4443 33 355664 233566789999999998877773 12 2
Q ss_pred EEEEeCCCCCCCCChhHHHHH-HHHHHhcC---------Cc-EEEecCCC
Q 015787 317 TVVSIFPSPMHYAGPTEVQWH-AKARINAG---------AN-FYIVGRDP 355 (400)
Q Consensus 317 ~~l~~lp~~mryAGPREallH-AiiRkNyG---------cT-hfIVGRDH 355 (400)
+.+-+....-.|+.-.+-. ..+++-|+ +. .||+|-|-
T Consensus 93 --~~V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 140 (236)
T PLN02945 93 --IMVDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDL 140 (236)
T ss_pred --eEecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhH
Confidence 4445555666776533322 23455563 22 58889884
No 24
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=93.87 E-value=0.44 Score=44.23 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=65.2
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCC-CC--CCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-KA--DDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~t-K~--dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mr 327 (400)
|-||+|.||..+.+. |++.. ..+.+++.|..... |. .-++.+.|++-.+..+++ .| ...++ ....+
T Consensus 5 sFdP~H~GHl~l~~~----a~~~~-~~d~v~~~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~--~~--~~~v~--~~E~~ 73 (193)
T TIGR00482 5 SFDPIHYGHLLLAEE----ALDHL-DLDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIED--NP--KFEVD--DFEIK 73 (193)
T ss_pred cCCccCHHHHHHHHH----HHHHc-CCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhc--CC--CEEEe--HHHHh
Confidence 679999999999864 34431 12457777765543 43 448999999999988873 23 33444 34444
Q ss_pred CCCh--hHHHHHHHHHHhcC-Cc-EEEecCCCCCCCCCCCCCCCCCCchhhhHhhh
Q 015787 328 YAGP--TEVQWHAKARINAG-AN-FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSM 379 (400)
Q Consensus 328 yAGP--REallHAiiRkNyG-cT-hfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~ 379 (400)
-.|| .=-.+.. +|+.|. +. .||+|-|-.-=-+ .+| +.++|++.
T Consensus 74 ~~~~syT~~tl~~-l~~~~p~~~~~~iiG~D~l~~l~-----~W~---~~~~i~~~ 120 (193)
T TIGR00482 74 RGGPSYTIDTLKH-LKKKYPDVELYFIIGADALRSFP-----LWK---DWQELLEL 120 (193)
T ss_pred CCCCCCHHHHHHH-HHHHCCCCeEEEEEcHHHhhhhc-----ccc---CHHHHHHh
Confidence 5565 2223333 355564 43 5888998654321 233 55666654
No 25
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=93.69 E-value=0.24 Score=44.60 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=56.7
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAG 330 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAG 330 (400)
|-||+|.||..++++ |.+.. +-+.+-|..-+.|..-++.+.|++-.+..++ -+|.-.++ .. +.|
T Consensus 9 SFDPih~GHl~ii~~----A~~~~---D~v~v~v~~np~K~~~~s~e~R~~~l~~~~~--~~~~v~v~-~~------~~~ 72 (140)
T PRK13964 9 SFDPFHKGHLNILKK----ALKLF---DKVYVVVSINPDKSNASDLDSRFKNVKNKLK--DFKNVEVL-IN------ENK 72 (140)
T ss_pred eeCCCCHHHHHHHHH----HHHhC---CEEEEEeccCCCCCCCCCHHHHHHHHHHHHc--CCCCcEEe-cC------cCC
Confidence 889999999999874 44552 5677777777778878999999999998887 24543222 11 122
Q ss_pred hhHHHHHHHHHHhcCCcEEEecC
Q 015787 331 PTEVQWHAKARINAGANFYIVGR 353 (400)
Q Consensus 331 PREallHAiiRkNyGcThfIVGR 353 (400)
.+-+ +.|..||+-+|-|=
T Consensus 73 ---l~v~--~~~~~~a~~ivrGl 90 (140)
T PRK13964 73 ---LTAE--IAKKLGANFLIRSA 90 (140)
T ss_pred ---cHHH--HHHHCCCeEEEEec
Confidence 1222 45777999777663
No 26
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=93.69 E-value=0.34 Score=41.77 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=52.0
Q ss_pred CceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecc----cC-CCCCCCCChHHHHHHHHHHHHcCCCCCCcEE
Q 015787 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPL----GG-YTKADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (400)
Q Consensus 244 ~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~Pl----vG-~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~ 318 (400)
+.|++.=+-+++|+||..+++.| .+.+ +-+.+-.. .. ..+.--.+.+-|++..+.+ ++. +.+
T Consensus 2 ~~v~~~G~FDgvH~GH~~ll~~a----~~~~---~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~---~~v--d~v- 68 (129)
T cd02171 2 KVVITYGTFDLLHIGHLNLLERA----KALG---DKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESI---RYV--DLV- 68 (129)
T ss_pred cEEEEeeeeccCCHHHHHHHHHH----HHhC---CEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcC---Ccc--CEE-
Confidence 35677778999999999999754 4442 22222221 11 1122346778898877654 112 122
Q ss_pred EEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 015787 319 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (400)
Q Consensus 319 l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHA 356 (400)
+ + +..+.+-+-. + +.+.++++++|.|+.
T Consensus 69 ~---~----~~~~~~f~~~--~-~~l~~~~vv~G~d~~ 96 (129)
T cd02171 69 I---P----ETNWEQKIED--I-KKYNVDVFVMGDDWE 96 (129)
T ss_pred e---c----CCCccChHHH--H-HHhCCCEEEECCCCc
Confidence 1 2 2344332222 2 678999999999984
No 27
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=93.49 E-value=0.94 Score=41.11 Aligned_cols=120 Identities=21% Similarity=0.245 Sum_probs=72.8
Q ss_pred ceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccC----CCC-CCCCChHHHHHHHHHHHHcCCCCCCcEEE
Q 015787 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG----YTK-ADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (400)
Q Consensus 245 ~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG----~tK-~dDi~~~~R~r~ye~ll~~~y~p~~~~~l 319 (400)
+|+-.=|-||+|.||..+.+. |.+.+ +-|++-.--. ..| .--.|.+.|++..+.+++ +..|..++.+
T Consensus 3 ~v~~gGtFDplH~GH~~ll~~----A~~~~---d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~-~~~~~~~~~i 74 (153)
T PRK00777 3 KVAVGGTFDPLHDGHRALLRK----AFELG---KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLK-AVEYDREYEI 74 (153)
T ss_pred EEEEecccCCCCHHHHHHHHH----HHHcC---CEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHH-hcCCCCcEEE
Confidence 344444899999999999873 45553 4455522222 223 346799999999999998 4667666666
Q ss_pred EeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeec
Q 015787 320 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKA 396 (400)
Q Consensus 320 ~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vY 396 (400)
..+.-+ -||. +..+ .+-++||.|- +.+...-.++..+. |+..++|+.++..-|
T Consensus 75 ~~i~d~---~gp~-------~~~~--~d~ivvs~et-----------~~~~~~in~~r~~~-gl~~l~i~~v~~~~~ 127 (153)
T PRK00777 75 VKIDDP---YGPA-------LEDD--FDAIVVSPET-----------YPGALKINEIRRER-GLKPLEIVVIDFVLA 127 (153)
T ss_pred Eecccc---CCCc-------cccC--CCEEEEChhh-----------hhhHHHHHHHHHHC-CCCceEEEEEeeeec
Confidence 544432 3453 1122 5667778772 33334445555554 566677777666443
No 28
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=93.47 E-value=0.87 Score=44.46 Aligned_cols=106 Identities=25% Similarity=0.304 Sum_probs=65.2
Q ss_pred ceEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 015787 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIF 322 (400)
Q Consensus 245 ~VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG-~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~l 322 (400)
+|.=|- |-||+|.||..+.+. |++. +.-+-+++.|... +.|....+.+.|++-.+..+++.-.+.....++
T Consensus 23 ~IgifGGSFdPiH~GHl~ia~~----~~~~-l~ld~v~~iP~~~pp~K~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~-- 95 (243)
T PRK06973 23 RIGILGGTFDPIHDGHLALARR----FADV-LDLTELVLIPAGQPWQKADVSAAEHRLAMTRAAAASLVLPGVTVRVA-- 95 (243)
T ss_pred eEEEECCCCCCCcHHHHHHHHH----HHHH-cCCCEEEEEECCcCCCCCCCCCHHHHHHHHHHHHHhccCCCceEEEe--
Confidence 355555 999999999999763 3333 1225577777643 345567899999999998887311122233444
Q ss_pred CCCCCCCChhHHHH-HHHHHHhcC--Cc-EEEecCCCCC
Q 015787 323 PSPMHYAGPTEVQW-HAKARINAG--AN-FYIVGRDPAG 357 (400)
Q Consensus 323 p~~mryAGPREall-HAiiRkNyG--cT-hfIVGRDHAG 357 (400)
.....-.||.=.+- =..+++.|| +. .||+|-|..-
T Consensus 96 ~~Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~ 134 (243)
T PRK06973 96 TDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLV 134 (243)
T ss_pred HhhhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHh
Confidence 44444467664431 133466683 43 6899998653
No 29
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=93.42 E-value=0.7 Score=42.81 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=55.1
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccC---CCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG---YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG---~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mr 327 (400)
+-||+|.||..+++. |++. ++-|+|.+-.. .++...++.+.|++-.+..+.+.-++.+++.+.+++..
T Consensus 8 ~F~P~H~GHl~~i~~----a~~~---~d~v~v~i~s~~~~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~-- 78 (174)
T PRK01153 8 RFQPFHKGHLEVIKW----ILEE---VDELIIGIGSAQESHTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDI-- 78 (174)
T ss_pred ccCCCCHHHHHHHHH----HHHh---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCc--
Confidence 567999999999874 4553 35555533222 23456689999999999888643445566666555533
Q ss_pred CCChhHHHHHHHHHHhcC
Q 015787 328 YAGPTEVQWHAKARINAG 345 (400)
Q Consensus 328 yAGPREallHAiiRkNyG 345 (400)
..+..|-+-+++--.
T Consensus 79 ---~~~~~w~~~v~~~~~ 93 (174)
T PRK01153 79 ---EFNSIWVSHVESYTP 93 (174)
T ss_pred ---chHHHHHHHHHHhCC
Confidence 256788888866554
No 30
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=92.91 E-value=2.5 Score=42.65 Aligned_cols=101 Identities=24% Similarity=0.254 Sum_probs=64.1
Q ss_pred ceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEE----ecc--cCCCC--CCCCChHHHHHHHHHHHHcCCCCCCc
Q 015787 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPL--GGYTK--ADDVPLSWRMKQHEKVLEDGVLDPET 316 (400)
Q Consensus 245 ~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll----~Pl--vG~tK--~dDi~~~~R~r~ye~ll~~~y~p~~~ 316 (400)
.|+++=+-+-+|+||..|++.|.+.|.+.+. ...++ ||- ....+ .--.+.+-|.+..+.+ | =+.
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~--~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~---g---VD~ 86 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGL--PSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL---G---VDY 86 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCC--CEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc---C---CCE
Confidence 6888889999999999999977666655432 22233 332 11111 2235667787766543 2 234
Q ss_pred EEEEeCCCCC--CCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 015787 317 TVVSIFPSPM--HYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (400)
Q Consensus 317 ~~l~~lp~~m--ryAGPREallHAiiRkNyGcThfIVGRDHA 356 (400)
+++ +|... .--.| |..++-++.+.+++.+++||.|+.
T Consensus 87 ~~~--~~F~~~~~~ls~-e~Fi~~~l~~~l~~~~iVvG~Df~ 125 (305)
T PRK05627 87 VLV--LPFDEEFAKLSA-EEFIEDLLVKGLNAKHVVVGFDFR 125 (305)
T ss_pred EEE--ecCCHHHhcCCH-HHHHHHHHHhccCCCEEEECCCCC
Confidence 444 44432 22244 556677888899999999999985
No 31
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=92.54 E-value=1.2 Score=41.54 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=65.2
Q ss_pred ceEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCC-CCC--CCCChHHHHHHHHHHHHcCCCCCCcEEEE
Q 015787 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY-TKA--DDVPLSWRMKQHEKVLEDGVLDPETTVVS 320 (400)
Q Consensus 245 ~VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~-tK~--dDi~~~~R~r~ye~ll~~~y~p~~~~~l~ 320 (400)
+|.-|- +-||+|.||..|.+.| ++.. .-+-+++.|--.. .|. .-.+.+.|++-.+.++++ .| .+.++
T Consensus 5 ~i~i~gGsFdP~H~GH~~l~~~a----~~~~-~~d~v~~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~--~~--~~~v~ 75 (203)
T PRK00071 5 RIGLFGGTFDPPHYGHLAIAEEA----AERL-GLDEVWFLPNPGPPHKPQKPLAPLEHRLAMLELAIAD--NP--RFSVS 75 (203)
T ss_pred EEEEEeeCCCccCHHHHHHHHHH----HHHc-CCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHhcC--CC--ceEEe
Confidence 455565 8999999999998743 3321 1133555554322 232 578999999999988873 23 34444
Q ss_pred eCCCCCCCCChhHHH--HHHHHHHhcCC-c-EEEecCCCCCCCCCCCCCCCCCCchhhhHhhhC
Q 015787 321 IFPSPMHYAGPTEVQ--WHAKARINAGA-N-FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMA 380 (400)
Q Consensus 321 ~lp~~mryAGPREal--lHAiiRkNyGc-T-hfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~ 380 (400)
-+. ..-.||.=.+ +.. +++.|.. . .||+|-|-.- .|-.-++.++|++.+
T Consensus 76 ~~E--~~~~~~syT~~tl~~-l~~~~p~~~~~fiiG~D~l~--------~l~~W~~~~~i~~~~ 128 (203)
T PRK00071 76 DIE--LERPGPSYTIDTLRE-LRARYPDVELVFIIGADALA--------QLPRWKRWEEILDLV 128 (203)
T ss_pred HHH--HhCCCCCCHHHHHHH-HHHHCCCCcEEEEEcHHHhh--------hcccccCHHHHHHhC
Confidence 332 2223433221 222 3445643 3 5888998332 233334567777643
No 32
>PRK13671 hypothetical protein; Provisional
Probab=92.51 E-value=0.59 Score=47.13 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=57.0
Q ss_pred eEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC---CCChHHHHHHHHHHHHcCCCCCCcEEEEe
Q 015787 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD---DVPLSWRMKQHEKVLEDGVLDPETTVVSI 321 (400)
Q Consensus 246 VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~d---Di~~~~R~r~ye~ll~~~y~p~~~~~l~~ 321 (400)
|+|.- +-||+|+||.++.+.+ .+. +..+.+++.|-..+.+.+ -++.+.|.+.-+ ..| -|-|+==+
T Consensus 2 ~~GIIaeFNP~H~GHl~~~~~a----~~~-~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~---~~G---~DLViELP 70 (298)
T PRK13671 2 AIGIIAEYNPFHNGHIYQINYI----KNK-FPNEKIIVILSGKYTQRGEIAVASFEKRKKIAL---KYG---VDKVIKLP 70 (298)
T ss_pred ceeEEeeeCCccHHHHHHHHHH----HHh-cCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHH---HcC---CCEEEecc
Confidence 45666 7899999999998744 333 123556776766666544 347788887433 322 33332112
Q ss_pred CCCCC----CCCChhHHHHHHHHHHhcCCcEEEecCCCCCC
Q 015787 322 FPSPM----HYAGPTEVQWHAKARINAGANFYIVGRDPAGM 358 (400)
Q Consensus 322 lp~~m----ryAGPREallHAiiRkNyGcThfIVGRDHAGv 358 (400)
++.+. .||---=.+ -...||+++.+|-++..+
T Consensus 71 ~~~a~~sAe~FA~gaV~l-----L~~lgvd~l~FGsE~~d~ 106 (298)
T PRK13671 71 FEYATQAAHIFAKGAIKK-----LNKEKIDKLIFGSESNDI 106 (298)
T ss_pred HHHHhhchHHHHHHHHHH-----HHHcCCCEEEECCCCCCH
Confidence 22222 222111222 356799999999998776
No 33
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=92.46 E-value=0.27 Score=44.78 Aligned_cols=137 Identities=17% Similarity=0.168 Sum_probs=72.2
Q ss_pred CceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEE--ec--ccC--CCCCCCCChHHHHHHHHHHHHcCCCCCCcE
Q 015787 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL--HP--LGG--YTKADDVPLSWRMKQHEKVLEDGVLDPETT 317 (400)
Q Consensus 244 ~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll--~P--lvG--~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~ 317 (400)
+.|+++=.-+=+|+||..|++.+.+.|.+.+++-..+.. || +.+ ....--.+.+-|.+.++.+ --+.+
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~------Gvd~~ 79 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL------GVDYV 79 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT------TESEE
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc------CCCEE
Confidence 467777788999999999999888888776432112222 23 233 1122245667777766543 23444
Q ss_pred EEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeec
Q 015787 318 VVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKA 396 (400)
Q Consensus 318 ~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vY 396 (400)
++-.|...+.---| |.-++-++.++++|.+++||-|+. -| +=...+++.+-+.... .++++..++..-+
T Consensus 80 ~~~~F~~~~~~ls~-~~Fi~~iL~~~l~~~~ivvG~Dfr-FG-------~~~~G~~~~L~~~~~~-~g~~v~~v~~~~~ 148 (157)
T PF06574_consen 80 IVIPFTEEFANLSP-EDFIEKILKEKLNVKHIVVGEDFR-FG-------KNRSGDVELLKELGKE-YGFEVEVVPPVKI 148 (157)
T ss_dssp EEE-CCCHHCCS-H-HHHHHHHCCCHCTEEEEEEETT-E-ES-------GGGEEEHHHHHHCTTT-T-SEEEEE---EE
T ss_pred EEecchHHHHcCCH-HHHHHHHHHhcCCccEEEEccCcc-CC-------CCCCCCHHHHHHhccc-CceEEEEECCEEc
Confidence 44333333333344 567888888999999999999953 23 1112233444434343 3677777766543
No 34
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=92.37 E-value=0.93 Score=46.07 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=63.7
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccC---CCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG---YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG---~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mr 327 (400)
+-||+|.||..+++ +|++.. +-|+|.|-.. .++.+-++++.|++-.+..++ -++..++.+.++|-..
T Consensus 14 ~F~P~H~GHl~~i~----~a~~~~---d~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~~~~--~~~~~r~~~~pi~d~~- 83 (340)
T PRK05379 14 RFQPFHNGHLAVIR----EALSRA---KKVIVLIGSADLARSIKNPFSFEERAQMIRAALA--GIDLARVTIRPLRDSL- 83 (340)
T ss_pred ccCCCCHHHHHHHH----HHHHHC---CEEEEEEccCCCCCcCCCCCCHHHHHHHHHHHhh--cCCCceEEEEECCCCC-
Confidence 78999999999987 455552 5566666322 355677999999999999987 3566788777777632
Q ss_pred CCChhHHHHHHHHHHh------cCCcEEEecCCC
Q 015787 328 YAGPTEVQWHAKARIN------AGANFYIVGRDP 355 (400)
Q Consensus 328 yAGPREallHAiiRkN------yGcThfIVGRDH 355 (400)
.++..|-+-+++. -..+-.++|.|-
T Consensus 84 ---~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~ 114 (340)
T PRK05379 84 ---YNDSLWLAEVQAAVAEHAGADARIGLIGHEK 114 (340)
T ss_pred ---cChHHHHHHHHHHHHhccCCCCcEEEECCcC
Confidence 3567888887642 234445556443
No 35
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=91.99 E-value=1.2 Score=44.46 Aligned_cols=101 Identities=21% Similarity=0.233 Sum_probs=61.8
Q ss_pred EEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEE----ecc--cCC-CCCCCCChHHHHHHHHHHHHcCCCCCCcEEE
Q 015787 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPL--GGY-TKADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (400)
Q Consensus 247 vAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll----~Pl--vG~-tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l 319 (400)
+++=.-+-+|+||..|++.+.+.|.+.+.+ ..++ ||. ..+ ..+--.+.+.|.+-.+.+ -=+.+++
T Consensus 2 vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~--~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~------Gvd~~~~ 73 (288)
T TIGR00083 2 LAIGYFDGLHLGHQALLQELKQIAEEKGLP--PAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK------GVEQLLV 73 (288)
T ss_pred EEEEeCCccCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc------CCCEEEE
Confidence 455567899999999999888877776533 2333 342 222 112244567776654432 2344444
Q ss_pred EeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 015787 320 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (400)
Q Consensus 320 ~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHA 356 (400)
-.|.-.+.--.| |.-..-++.+.+++.+++||-|+.
T Consensus 74 ~~F~~~~a~ls~-e~Fi~~~l~~~l~~~~ivvG~Df~ 109 (288)
T TIGR00083 74 VVFDEEFANLSA-LQFIDQLIVKHLHVKFLVVGDDFR 109 (288)
T ss_pred eCCCHHHHcCCH-HHHHHHHHHhccCCcEEEECCCcc
Confidence 333333333355 445566777889999999999976
No 36
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=91.95 E-value=1.8 Score=39.83 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=58.4
Q ss_pred ceEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeC
Q 015787 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIF 322 (400)
Q Consensus 245 ~VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG-~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~l 322 (400)
+|.=|- |-||+|.||..+.+. + + + -+-+++.|-.. ..+..-++.+.|++-.+.++++ +....+.++.+
T Consensus 3 ~i~ifGGSFDP~H~GHl~ia~~----~-~-~--~d~v~~vP~~~~~~~k~~~~~~~R~~M~~~ai~~--~~~~~~~v~~~ 72 (174)
T PRK08887 3 KIAVFGSAFNPPSLGHKSVIES----L-S-H--FDLVLLVPSIAHAWGKTMLDYETRCQLVDAFIQD--LGLSNVQRSDI 72 (174)
T ss_pred eEEEeCCCCCCCCHHHHHHHHH----h-h-c--CCEEEEEECCCCcccCCCCCHHHHHHHHHHHHhc--cCCCceEEehH
Confidence 354555 899999999999652 2 2 2 25577777652 3344778999999999998883 22224445444
Q ss_pred CCCC-CCCChh--HHHHHHHHHHhcC-Cc-EEEecCCCCC
Q 015787 323 PSPM-HYAGPT--EVQWHAKARINAG-AN-FYIVGRDPAG 357 (400)
Q Consensus 323 p~~m-ryAGPR--EallHAiiRkNyG-cT-hfIVGRDHAG 357 (400)
...- +=.||. =..+-.+ ++.|. +. .||+|-|-.-
T Consensus 73 E~~~~~~~~~~yT~~tl~~l-~~~~p~~~~~~iiG~D~l~ 111 (174)
T PRK08887 73 EQELYAPDESVTTYALLTRL-QELYPEADLTFVIGPDNFL 111 (174)
T ss_pred HhhhccCCCCcchHHHHHHH-HHHCCCCeEEEEEccchHH
Confidence 3211 012332 1122333 33343 22 2788988543
No 37
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=91.54 E-value=2.7 Score=40.42 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=47.9
Q ss_pred eEEee-eCCCCchhHHHHHHHHHHHHHHh-c-CCCCcEEEecccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEe
Q 015787 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEM-G-YQNPILLLHPLGG-YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSI 321 (400)
Q Consensus 246 VvAfQ-tRNPlHRaHe~l~r~~~~~ale~-~-~~~~~Lll~PlvG-~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~ 321 (400)
|.-|. |-||+|.||..+.+.+.+.. +. + +.....++.|.-- +.|..-.+.+.|++-.+..+++ .| .+.++.
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l-~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~--~~~v~~ 76 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHL-HETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQS--SD--WIRVDD 76 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHH-HhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHcc--CC--CEEEEe
Confidence 55566 89999999999987554322 22 0 0001123456422 4567788999999999988873 23 344554
Q ss_pred CCCCCCCCCh
Q 015787 322 FPSPMHYAGP 331 (400)
Q Consensus 322 lp~~mryAGP 331 (400)
+. ..-.||
T Consensus 77 ~E--~~~~~~ 84 (225)
T cd09286 77 WE--SLQPEW 84 (225)
T ss_pred hh--ccCCcc
Confidence 44 444555
No 38
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=91.47 E-value=1.2 Score=41.99 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=75.1
Q ss_pred eeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHc--C--CCCCCcEEEE--eCC
Q 015787 250 QLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLED--G--VLDPETTVVS--IFP 323 (400)
Q Consensus 250 QtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~--~--y~p~~~~~l~--~lp 323 (400)
...||+..||.||+.. |.+. .+.|..++|.+-++ .+|.+.|.+--+.=..+ | +.|.+.-+++ .||
T Consensus 6 MNaNPFT~GH~yLiE~----Aa~~----~d~l~vFVV~eD~S-~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFP 76 (182)
T PF08218_consen 6 MNANPFTLGHRYLIEQ----AAKE----CDWLHVFVVSEDRS-LFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFP 76 (182)
T ss_pred EcCCCCccHHHHHHHH----HHHh----CCEEEEEEEccccC-cCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccCh
Confidence 4789999999999863 3333 35888888886664 59999998844443320 0 2333444443 344
Q ss_pred CCCCCCChhHH---------HHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeee
Q 015787 324 SPMHYAGPTEV---------QWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVC 394 (400)
Q Consensus 324 ~~mryAGPREa---------llHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~ 394 (400)
.--.-..-..+ +|--.|++.+|.|+=-||-++-..=. ..|.. .-+++| |. .||+++.++..
T Consensus 77 sYFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT-----~~YN~-~M~~~L---p~-~gi~v~ei~R~ 146 (182)
T PF08218_consen 77 SYFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVT-----RIYNE-AMKEIL---PP-YGIEVVEIPRK 146 (182)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHH-----HHHHH-HHHHhc---cc-cCCEEEEEecc
Confidence 43322222221 33345888999999999998765431 44521 123343 43 25777777654
No 39
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=91.21 E-value=3.2 Score=42.35 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=80.0
Q ss_pred CceEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEE---
Q 015787 244 DAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVV--- 319 (400)
Q Consensus 244 ~~VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l--- 319 (400)
++|.+|- +.||+|.||.+|+++ |++. -+.++..++. .+..-++.+.|++-.+..+++ +|. -.++
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~----A~~~----~d~~~v~v~~-~~~~~f~~~~R~~~v~~~~~~--~~n-v~v~~~~ 206 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQ----AARQ----CDWLHLFVVK-EDASLFSYDERFALVKQGIQD--LSN-VTVHNGS 206 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHH----HHHH----CCEEEEEEEe-CCCCCCCHHHHHHHHHHHhcC--CCC-EEEEecC
Confidence 4787777 999999999999874 4454 2355555555 445689999999999988873 343 2222
Q ss_pred ------EeCCCCCCCCC----hhHHHHH-----HHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchhhhHhh-hCCCC
Q 015787 320 ------SIFPSPMHYAG----PTEVQWH-----AKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLS-MAPGL 383 (400)
Q Consensus 320 ------~~lp~~mryAG----PREallH-----AiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~-~~~~l 383 (400)
+.||.--.=.. --.+-+. -.|+.-+|.||=-||-++--.= ...|.. .-++++. ..++.
T Consensus 207 ~~~is~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~-----t~~yn~-~m~~~~~~~~~~~ 280 (332)
T TIGR00124 207 AYIISRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV-----TALYNQ-KMKYWLEEPNDAP 280 (332)
T ss_pred CceeccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh-----HHHHHH-HHHHhhhccCCCC
Confidence 12332211111 1122233 3466779999999999875443 156632 2233443 33443
Q ss_pred CcceEEEeee
Q 015787 384 ERLNILPFKV 393 (400)
Q Consensus 384 ~~i~I~p~~~ 393 (400)
+|++.+++.
T Consensus 281 -~I~~~~I~R 289 (332)
T TIGR00124 281 -PIEVVEIQR 289 (332)
T ss_pred -CcEEEEEee
Confidence 688888875
No 40
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=90.90 E-value=0.69 Score=34.86 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=35.3
Q ss_pred EEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEec---ccCCCCC-CCCChHHHHHHHHHHHH
Q 015787 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP---LGGYTKA-DDVPLSWRMKQHEKVLE 308 (400)
Q Consensus 247 vAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~P---lvG~tK~-dDi~~~~R~r~ye~ll~ 308 (400)
+.+=+-||+|.||.++++. |.+.+ +..+++.+ .....|. .-.+.+.|.+..+.+..
T Consensus 3 ~~~G~Fdp~H~GH~~~l~~----a~~~~--~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 62 (66)
T TIGR00125 3 IFVGTFDPFHLGHLDLLER----AKELF--DELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKY 62 (66)
T ss_pred EEcCccCCCCHHHHHHHHH----HHHhC--CEEEEEECchHhccccCCCCCCCHHHHHHHHHHhcc
Confidence 3444789999999999874 45553 11222222 2333344 55889999998887654
No 41
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=89.52 E-value=2.3 Score=38.19 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=43.2
Q ss_pred EEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCC---CC--CCC-CChHHHHHHHHHHHHcCCCCCCcEEE
Q 015787 247 FAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY---TK--ADD-VPLSWRMKQHEKVLEDGVLDPETTVV 319 (400)
Q Consensus 247 vAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~---tK--~dD-i~~~~R~r~ye~ll~~~y~p~~~~~l 319 (400)
|+|- |-||+|.||..|++.| .+.+- +-+.+-..... .| +.- .+.+.|++..+.+++ .+-|.-. +
T Consensus 2 v~~GGtFD~lH~GH~~Ll~~a----~~~~~--d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~-~~~~~~~--~ 72 (143)
T cd02164 2 VAVGGTFDRLHDGHKILLSVA----FLLAG--EKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLV-DLKPTLK--Y 72 (143)
T ss_pred EEEcccCCCCCHHHHHHHHHH----HHHhc--CCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHH-hcCCCce--E
Confidence 3444 8899999999998754 44321 22333111122 12 223 489999999999998 3444323 3
Q ss_pred EeCCCCCCCCChh
Q 015787 320 SIFPSPMHYAGPT 332 (400)
Q Consensus 320 ~~lp~~mryAGPR 332 (400)
.+.|..=.| ||.
T Consensus 73 ~i~~i~d~~-Gpt 84 (143)
T cd02164 73 EIVPIDDPY-GPT 84 (143)
T ss_pred EEEEccCCC-CCc
Confidence 334444333 553
No 42
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=88.98 E-value=3.9 Score=37.68 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=50.7
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEe-cccCC--CCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH-PLGGY--TKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~-PlvG~--tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mr 327 (400)
+-||+|.||..+++. |++. ++-|.|- +--.. ++..-++++.|++-.+..++ ..+..++.+.+++..
T Consensus 7 ~FdP~H~GHl~ii~~----a~~~---~D~lii~i~s~~~~~k~~~p~~~~eR~~mi~~al~--~~~~~~~~~vP~~d~-- 75 (165)
T TIGR01527 7 RFQPFHLGHLEVIKK----IAEE---VDELIIGIGSAQESHTLENPFTAGERILMITQSLK--EVGDLTYYIIPIEDI-- 75 (165)
T ss_pred ccCCCCHHHHHHHHH----HHHH---CCEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCCceEEEEecCCc--
Confidence 567999999999874 4555 2555552 22221 23567889999999977776 334334444444432
Q ss_pred CCChhHHHHHHHHHHhc
Q 015787 328 YAGPTEVQWHAKARINA 344 (400)
Q Consensus 328 yAGPREallHAiiRkNy 344 (400)
.....|-+.++.--
T Consensus 76 ---~~~~~w~~~v~~~~ 89 (165)
T TIGR01527 76 ---ERNSIWVSYVESMT 89 (165)
T ss_pred ---cHHHHHHHHHHHhC
Confidence 25778998887443
No 43
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=88.55 E-value=0.6 Score=39.88 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=33.0
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCC---CCCCChHHHHHHHHHHHH
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK---ADDVPLSWRMKQHEKVLE 308 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK---~dDi~~~~R~r~ye~ll~ 308 (400)
+-||+|.||..+++ .|.+.+-. +-+++.|...... ..-++.+.|++-.+.++.
T Consensus 5 sFdP~H~GH~~~l~----~a~~~~~~-~~vi~v~~~~~~~k~~~~~~~~~~R~~ml~~~~~ 60 (157)
T PF01467_consen 5 SFDPPHNGHLNLLR----EARELFDE-DLVIVVPSDNSPHKDKKPIFSFEERLEMLRAAFK 60 (157)
T ss_dssp --TT--HHHHHHHH----HHHHHSSE-SEEEEEEEEHHCHSTTSSSSTHHHHHHHHHHHHT
T ss_pred EcCcccHHHHHHHH----HHHHhccc-cccccccccccccccccccCcHHHHHHHHHHHHh
Confidence 57999999999986 45565311 1145455444332 246899999999998887
No 44
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=86.51 E-value=2.7 Score=39.94 Aligned_cols=110 Identities=17% Similarity=0.302 Sum_probs=68.0
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCC-C--CCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-K--ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~t-K--~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mr 327 (400)
|-||+|.||..+.+.+. ...+ -+-|+..|...+. | .+-.|.+.|++-.+.+++++ |+ +.+-...+.
T Consensus 11 sFdP~H~GHl~ia~~~~---~~l~--ld~vi~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~--~~----~~v~~~e~~ 79 (197)
T COG1057 11 SFDPPHYGHLLIAEEAL---DQLG--LDKVIFLPSPVPPHKKKKELASAEHRLAMLELAIEDN--PR----FEVSDREIK 79 (197)
T ss_pred CCCCCCHHHHHHHHHHH---HhcC--CCeEEEecCCCCCCCCCccCCCHHHHHHHHHHHHhcC--CC----cceeHHHHH
Confidence 89999999999976432 2222 2346666655543 3 45899999999999999842 33 222333444
Q ss_pred CCChh---HHHHHHHHHHhcCCc-EEEecCCCC-CCCCCCCCCCCCCCchhhhHhhhC
Q 015787 328 YAGPT---EVQWHAKARINAGAN-FYIVGRDPA-GMGHPVEKRDLYDADHGKKVLSMA 380 (400)
Q Consensus 328 yAGPR---EallHAiiRkNyGcT-hfIVGRDHA-GvG~~~~~~~~Yd~~~aq~i~~~~ 380 (400)
--|+. +.+-|-.-+.|-.+. -||+|-|.- .+. .+ ++.++|++..
T Consensus 80 r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~------~W---~~~~ell~~~ 128 (197)
T COG1057 80 RGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLP------KW---YDWDELLKLV 128 (197)
T ss_pred cCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhh------hh---hhHHHHHHhC
Confidence 45554 666665445555552 389999863 333 23 4556676654
No 45
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=86.16 E-value=7.3 Score=34.69 Aligned_cols=97 Identities=18% Similarity=0.191 Sum_probs=55.8
Q ss_pred HhcCCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEe--cccCCCCCC---CCChHHHHHHHHHHHHcCCCC
Q 015787 239 SKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH--PLGGYTKAD---DVPLSWRMKQHEKVLEDGVLD 313 (400)
Q Consensus 239 ~~~gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~--PlvG~tK~d---Di~~~~R~r~ye~ll~~~y~p 313 (400)
++++=+.|++.=+-+-+|+||..+++.| .+.+-. -.+.++ |.....|+. =.+.+-|++..+++ ++..
T Consensus 7 ~~~~~~~v~~~G~FDgvH~GH~~ll~~a----~~~~~~-~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~---~~VD 78 (144)
T TIGR02199 7 RARGKKIVFTNGCFDILHAGHVSYLQQA----RALGDR-LVVGVNSDASVKRLKGETRPINPEEDRAEVLAAL---SSVD 78 (144)
T ss_pred HHcCCCEEEEeCcccccCHHHHHHHHHH----HHhCCc-cEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhc---CCCC
Confidence 3444467888889999999999999754 444311 123332 221111221 45667788766654 1222
Q ss_pred CCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCC
Q 015787 314 PETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 357 (400)
Q Consensus 314 ~~~~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAG 357 (400)
.+++ ++ .+ -|.|-+ +.+++.++++|-|+..
T Consensus 79 --~vi~--f~-~~---~~~~fi------~~l~~~~vv~G~d~~~ 108 (144)
T TIGR02199 79 --YVVI--FD-ED---TPEELI------GELKPDILVKGGDYKV 108 (144)
T ss_pred --EEEE--CC-CC---CHHHHH------HHhCCCEEEECCCCCC
Confidence 3333 32 11 344433 3699999999998764
No 46
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=85.52 E-value=13 Score=38.87 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=57.1
Q ss_pred CceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCC----------CCCCChHHHHHHHHHHHHcCCCC
Q 015787 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK----------ADDVPLSWRMKQHEKVLEDGVLD 313 (400)
Q Consensus 244 ~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK----------~dDi~~~~R~r~ye~ll~~~y~p 313 (400)
+..+.+=+-+|+|.||..|+++ |++. ++.|.|.+..-..+ ..-++.+.|++-.+..+. ..+
T Consensus 53 ~~~v~~G~FdP~H~GH~~lI~~----A~~~---~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~--~~~ 123 (399)
T PRK08099 53 KIGVVFGKFYPLHTGHIYLIQR----ACSQ---VDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFK--YQK 123 (399)
T ss_pred cEEEEEEecCCCCHHHHHHHHH----HHHH---CCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhC--CCC
Confidence 4566666999999999999974 4444 24454444333222 345788999998888776 344
Q ss_pred CCcEEEEeC---CCCCCCCChhHHHHHHHHHHhc-----CCcEEEecCC
Q 015787 314 PETTVVSIF---PSPMHYAGPTEVQWHAKARINA-----GANFYIVGRD 354 (400)
Q Consensus 314 ~~~~~l~~l---p~~mryAGPREallHAiiRkNy-----GcThfIVGRD 354 (400)
++.+..+ +.+....| +..|-+-+++-. ..+.+++|-+
T Consensus 124 --~v~v~~~~~~~~~~~~~~--~~~w~~~v~~~v~~~~~~~~~vf~~~~ 168 (399)
T PRK08099 124 --NIKIHAFNEEGMEPYPHG--WDVWSNGIKAFMAEKGIQPDVIYTSEE 168 (399)
T ss_pred --CEEEEecCCCCCCCCCcc--HHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4444422 22222223 445666665443 3455555544
No 47
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=84.52 E-value=1.4 Score=37.99 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=47.6
Q ss_pred EeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEec--ccCCC-CCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCC
Q 015787 248 AFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP--LGGYT-KADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPS 324 (400)
Q Consensus 248 AfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~P--lvG~t-K~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~ 324 (400)
++=+-+.+|+||..+++.| .+.+.+ ..+.+++ +.-.. +.-=.+.+-|++..+.+ +|. +.+ +|.
T Consensus 3 ~~G~FDg~H~GH~~~l~~a----~~~~~~-~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~---~~V--d~v----i~~ 68 (125)
T TIGR01518 3 TYGTFDLLHWGHINLLERA----KQLGDY-LIVALSTDEFNLQKQKKAYHSYEHRKLILETI---RYV--DLV----IPE 68 (125)
T ss_pred EcceeCCCCHHHHHHHHHH----HHcCCE-EEEEEechHHHhhcCCCCCCCHHHHHHHHHcC---CCc--cEE----ecC
Confidence 3446689999999999754 444311 1222222 22111 22235667888776654 111 122 221
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEecCCCCC
Q 015787 325 PMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 357 (400)
Q Consensus 325 ~mryAGPREallHAiiRkNyGcThfIVGRDHAG 357 (400)
. |.|.-.+- + +.+++..+++|-|+.|
T Consensus 69 ----~-~~~~f~~~-l-~~~~~~~vv~G~D~~g 94 (125)
T TIGR01518 69 ----K-SWEQKKQD-I-IDFNIDVFVMGDDWEG 94 (125)
T ss_pred ----C-CccchHHH-H-HHcCCCEEEECCCccc
Confidence 1 22222222 3 4799999999999954
No 48
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=84.42 E-value=9.7 Score=33.95 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=52.1
Q ss_pred CceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEec----ccCCCC-CCCCChHHHHHHHHHHHHcCCCCCCcEE
Q 015787 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP----LGGYTK-ADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (400)
Q Consensus 244 ~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~P----lvG~tK-~dDi~~~~R~r~ye~ll~~~y~p~~~~~ 318 (400)
+.|++.=+-+.+|+||..+++.| .+.+ +.+++-. .+...+ .-=.+.+-|++..+.+ ++ -+.++
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a----~~~~---~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~l---g~--VD~vi 72 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAA----RSLG---DILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAAL---GF--VDYVV 72 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHH----HHhC---CeEEEEEeChHHhccCCCCCCCCHHHHHHHHHcc---CC--ccEEE
Confidence 45677778999999999999754 4443 2222222 122222 1235667788766543 12 12222
Q ss_pred EEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCC
Q 015787 319 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 357 (400)
Q Consensus 319 l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAG 357 (400)
++|. --|.| .+. .+++.++++|-|+..
T Consensus 73 --~~~~----~~~~~-fi~-----~l~~~~vv~G~d~~f 99 (144)
T cd02172 73 --LFDN----PTALE-IID-----ALQPNIYVKGGDYEN 99 (144)
T ss_pred --ECCC----CCHHH-HHH-----HhCCCEEEECCCccc
Confidence 2342 23544 222 599999999999863
No 49
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=84.22 E-value=2.3 Score=42.92 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=38.5
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccC---CCCCCCCChHHHHHHHHHHHH
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG---YTKADDVPLSWRMKQHEKVLE 308 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG---~tK~dDi~~~~R~r~ye~ll~ 308 (400)
|-||+|.||..+++. |++. .+-|+|.|-.- .++..-++.+.|++-.+..++
T Consensus 9 sFdP~H~GHl~ii~~----a~~~---~d~v~v~~~~~~~~~~~~~~~~~~~R~~~l~~~~~ 62 (325)
T TIGR01526 9 KFYPLHTGHIYLIYE----AFSK---VDELHIVVGSLFYDSKAKRPPPVQDRLRWLREIFK 62 (325)
T ss_pred ccCCCCHHHHHHHHH----HHHH---CCEEEEEECCCCcCccCCCCCCHHHHHHHHHHHhc
Confidence 899999999999874 4454 26677766431 145567899999999998877
No 50
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=83.94 E-value=8.7 Score=38.95 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=62.5
Q ss_pred CceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEE--ecccCCCCCC-----CCChHHHHHHHHHHHHcCCCCCCc
Q 015787 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL--HPLGGYTKAD-----DVPLSWRMKQHEKVLEDGVLDPET 316 (400)
Q Consensus 244 ~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll--~PlvG~tK~d-----Di~~~~R~r~ye~ll~~~y~p~~~ 316 (400)
.+|++.=.-+=+|+||..|++.+.+.|.+.+.....+.. ||.-= .+++ -.+...|.+..+ -+.=+.
T Consensus 16 ~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~-~~~~~~~~~Lt~~~~k~~~l~------~~gvd~ 88 (304)
T COG0196 16 GCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPREL-LKPDKPPTRLTPLREKIRLLA------GYGVDA 88 (304)
T ss_pred CcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHH-cCCCCCccccCCHHHHHHHHH------hcCCcE
Confidence 467777788899999999999888777776533223333 33221 1222 234455555333 233444
Q ss_pred EEEEeCCCCCCCC--ChhHHHHHHHHHHhcCCcEEEecCCC
Q 015787 317 TVVSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDP 355 (400)
Q Consensus 317 ~~l~~lp~~mryA--GPREallHAiiRkNyGcThfIVGRDH 355 (400)
+++ ++..-.+| .|.| -.+ ++-++..|.|+|||-|.
T Consensus 89 ~~v--~~F~~~fa~ls~~~-Fv~-~lv~~l~~k~ivvG~DF 125 (304)
T COG0196 89 LVV--LDFDLEFANLSAEE-FVE-LLVEKLNVKHIVVGFDF 125 (304)
T ss_pred EEE--EeCCHhHhhCCHHH-HHH-HHHhccCCcEEEEeccc
Confidence 444 34443343 5644 455 99999999999999995
No 51
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=83.36 E-value=9.3 Score=35.42 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=59.6
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCC
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAG 330 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAG 330 (400)
|-+|+++||.-++++| ..+ -|-+.|--..-+.|..-++.+-|++-.+.... -+|.-+|. + |.|
T Consensus 10 SFDPiTnGHlDii~RA----~~~---Fd~viVaV~~np~K~plFsleER~~l~~~~~~--~l~nV~V~-~-------f~~ 72 (159)
T COG0669 10 SFDPITNGHLDIIKRA----SAL---FDEVIVAVAINPSKKPLFSLEERVELIREATK--HLPNVEVV-G-------FSG 72 (159)
T ss_pred CCCCCccchHHHHHHH----HHh---ccEEEEEEEeCCCcCCCcCHHHHHHHHHHHhc--CCCceEEE-e-------ccc
Confidence 7899999999999854 333 14466666677889999999999999998876 45654432 2 233
Q ss_pred hhHHHHHHHHHHhcCCcEEEec
Q 015787 331 PTEVQWHAKARINAGANFYIVG 352 (400)
Q Consensus 331 PREallHAiiRkNyGcThfIVG 352 (400)
|=+=++|..||+.+|=|
T Consensus 73 -----Llvd~ak~~~a~~ivRG 89 (159)
T COG0669 73 -----LLVDYAKKLGATVLVRG 89 (159)
T ss_pred -----HHHHHHHHcCCCEEEEe
Confidence 45567788999998866
No 52
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=82.99 E-value=9.1 Score=38.78 Aligned_cols=114 Identities=15% Similarity=0.206 Sum_probs=64.1
Q ss_pred eEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEeccc-CCCCC-CCCCh-HHHHHHHHHHHHcCCCCCCcEEEEe
Q 015787 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLG-GYTKA-DDVPL-SWRMKQHEKVLEDGVLDPETTVVSI 321 (400)
Q Consensus 246 VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~Plv-G~tK~-dDi~~-~~R~r~ye~ll~~~y~p~~~~~l~~ 321 (400)
|.-|- |-||+|.||..|.+. |++.. .-+-+++.|.. -+.|. ...+. +.|++-.+.++++ . | .+.++.
T Consensus 3 i~i~gGsFdP~H~GHl~la~~----a~~~~-~~d~v~~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~-~-~--~~~v~~ 73 (342)
T PRK07152 3 IAIFGGSFDPIHKGHINIAKK----AIKKL-KLDKLFFVPTYINPFKKKQKASNGEHRLNMLKLALKN-L-P--KMEVSD 73 (342)
T ss_pred EEEEeeCCCCcCHHHHHHHHH----HHHHh-CCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhh-C-C--CeEEeH
Confidence 33444 899999999999763 34321 12456666643 33343 34555 8899999888873 2 3 344433
Q ss_pred CCCCCCCCChh---HHHHHHHHHHhcC-Cc-EEEecCCCCCCCCCCCCCCCCCCchhhhHhhhC
Q 015787 322 FPSPMHYAGPT---EVQWHAKARINAG-AN-FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMA 380 (400)
Q Consensus 322 lp~~mryAGPR---EallHAiiRkNyG-cT-hfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~ 380 (400)
+ ..+=.||. +.+ ..+++.|. +. .||+|-|-.-= |-.-.+.++|++..
T Consensus 74 ~--E~~~~~~syt~~tl--~~l~~~~p~~~~~~iiG~D~~~~--------l~~W~~~~~l~~~~ 125 (342)
T PRK07152 74 F--EIKRQNVSYTIDTI--KYFKKKYPNDEIYFIIGSDNLEK--------FKKWKNIEEILKKV 125 (342)
T ss_pred H--HHhCCCCCcHHHHH--HHHHHhCCCCcEEEEecHHHhhh--------cccccCHHHHHHhC
Confidence 3 33334543 222 33455564 32 67889885432 22223456777653
No 53
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=80.24 E-value=28 Score=35.65 Aligned_cols=178 Identities=16% Similarity=0.157 Sum_probs=101.3
Q ss_pred hhHHHHHHhcCCEEEe---eeEEEeccCCCCCCCCcccCCHHHHHHHHHhcCCCceEEee-eCCCCchhHHHHHHHHHHH
Q 015787 194 PYVDQAITYAGNWLIG---GDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQ-LRNPVHNGHALLMTDTRRR 269 (400)
Q Consensus 194 PgV~~~~~~~g~~~vg---G~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvAfQ-tRNPlHRaHe~l~r~~~~~ 269 (400)
|--+.+++..|=|-|. +-+.+++... ..|.+|..+-+..|. --++|-+.. -+||.--||.||+..
T Consensus 99 p~~~~lFk~~GF~~i~~~~~~ivlmENs~--trl~~y~~~L~k~r~-----~gkkIgaIVMNANPFTLGH~YLVEq---- 167 (352)
T COG3053 99 PEYAALFKQCGFSEIASAENVIVLMENSA--TRLKDYLSSLKKLRH-----PGKKIGAIVMNANPFTLGHRYLVEQ---- 167 (352)
T ss_pred hhHHHHHHhCCceEeeccCceEEEeecCc--hhHHHHHHHHHHhcc-----CCCeeEEEEEeCCCccchhHHHHHH----
Confidence 4445566667766663 4445555322 134444333322222 246788877 899999999999863
Q ss_pred HHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCC------cEEE--EeCCCCCCCCChhHH-------
Q 015787 270 LLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPE------TTVV--SIFPSPMHYAGPTEV------- 334 (400)
Q Consensus 270 ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~------~~~l--~~lp~~mryAGPREa------- 334 (400)
|.+. | +.|=.++|+ ...-++|++.|++-.+.=+. +++.- ..++ +.||.- |----++
T Consensus 168 Aaaq---c-DwlHLFvV~-eD~S~f~y~~R~~Lv~~G~~--~l~Nvt~HsgsdYiISrATFP~Y--FiKeq~vv~~s~t~ 238 (352)
T COG3053 168 AAAQ---C-DWLHLFVVK-EDSSLFPYEDRLDLVKKGTA--DLPNVTVHSGSDYIISRATFPAY--FIKEQSVVNDSQTE 238 (352)
T ss_pred HHhh---C-CEEEEEEEe-cccccCCHHHHHHHHHHhhc--cCCceEEecCCCeEEEecccchh--hhhhHHHHHHHHHH
Confidence 3333 3 456666777 44567999999995554333 34331 1222 334432 2222222
Q ss_pred ----HHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchhhhHhhhC--CCCCcceEEEeeeeeccC
Q 015787 335 ----QWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMA--PGLERLNILPFKVCKASD 398 (400)
Q Consensus 335 ----llHAiiRkNyGcThfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~--~~l~~i~I~p~~~~vYc~ 398 (400)
||.--+++..|.||=-||-++--.= ...|.. +-.+++.+. +. .-|+++.++.--|.+
T Consensus 239 iDl~iFr~~iA~aLgIThRfVG~EP~c~v-----T~~YNq-~M~~~L~~~~~~~-p~I~vvei~Rk~~~~ 301 (352)
T COG3053 239 IDLKIFRKYIAPALGITHRFVGTEPFCRV-----TAIYNQ-QMRYWLEDPTISA-PPIEVVEIERKKYQE 301 (352)
T ss_pred HHHHHHHHHHHHHhCcceeeecCCCCcHH-----HHHHHH-HHHHHHhccCCCC-CceEEEEeehhhhcC
Confidence 3444567789999999998865432 145632 335555542 22 238888877666554
No 54
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=79.76 E-value=10 Score=32.89 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=50.5
Q ss_pred ceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecc----c-CCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEE
Q 015787 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPL----G-GYTKADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (400)
Q Consensus 245 ~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~Pl----v-G~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l 319 (400)
.|++.=+-||+|+||..+++. |.+.+ +-+.+-+. + ..++.--.+.+-|++..+.+ + +.. .+++
T Consensus 3 ~v~~~G~FD~~H~GH~~ll~~----a~~~~---~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~-~--~vd--~v~~ 70 (136)
T cd02170 3 RVYAAGTFDIIHPGHIRFLEE----AKKLG---DYLIVGVARDETVAKIKRRPILPEEQRAEVVEAL-K--YVD--EVIL 70 (136)
T ss_pred EEEEcCccCCCCHHHHHHHHH----HHHhC---CEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcC-C--CcC--EEEE
Confidence 455556889999999999874 44553 22332221 1 11223456778899987753 2 222 2222
Q ss_pred EeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 015787 320 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (400)
Q Consensus 320 ~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHA 356 (400)
. -|.+. .+.+ .+ +.+..+|+|-|+-
T Consensus 71 --~-------~~~~~-~~~l-~~-~~~~~vv~G~d~~ 95 (136)
T cd02170 71 --G-------HPWSY-FKPL-EE-LKPDVIVLGDDQK 95 (136)
T ss_pred --C-------CCCCH-hHHH-HH-HCCCEEEECCCCC
Confidence 1 14443 3444 33 5568999999874
No 55
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=79.10 E-value=4.3 Score=33.74 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=28.7
Q ss_pred eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCC---CCCChHHHHHHHHHH
Q 015787 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKA---DDVPLSWRMKQHEKV 306 (400)
Q Consensus 251 tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~---dDi~~~~R~r~ye~l 306 (400)
+-||+|.||..+++. |.+.+ +.+++-+..-..+. +-.+.+.|++..+++
T Consensus 7 ~Fdp~H~GH~~l~~~----a~~~~---d~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 7 EPGYLHIGHAKLICR----AKGIA---DQCVVRIDDNPPVKVWQDPHELEERKESIEED 58 (105)
T ss_pred CCCCCCHHHHHHHHH----HHHhC---CcEEEEEcCCCcccccCChHHHHHHHHHHHHH
Confidence 349999999999874 55553 34555444333322 234555566655543
No 56
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=78.66 E-value=6.6 Score=36.77 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=39.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCC-----CCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCC
Q 015787 252 RNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK-----ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSP 325 (400)
Q Consensus 252 RNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK-----~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~ 325 (400)
-.|+|.||-++++ .|++. .|-|+| ++|... .+-+.+--|+-..+..+.+.-.+. |+.+..++-.
T Consensus 12 FqP~H~GHl~vi~----~al~~---vDeliI--~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~-r~~~~~v~d~ 80 (172)
T COG1056 12 FQPLHTGHLYVIK----RALSK---VDELII--VIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL-RVYLRPVFDI 80 (172)
T ss_pred cCCccHhHHHHHH----HHHHh---CCEEEE--EEccCcccccccCCCCccchhHHHHHHHHhcCCCc-eEEEEecCcc
Confidence 3499999999987 45665 243333 567632 334567778888876665444444 7666555543
No 57
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=76.80 E-value=15 Score=35.03 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=49.4
Q ss_pred CCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCC-----CCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCC
Q 015787 253 NPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-----KADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (400)
Q Consensus 253 NPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~t-----K~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mr 327 (400)
+|+|+||.++++ .|++. ++-|+| ++|.. ..+=+.+.-|+.-....+.+. ...++.+.+++- .
T Consensus 14 QPfH~GHl~~I~----~al~~---~devII--~IGSA~~s~t~~NPFTa~ER~~MI~~aL~e~--~~~rv~~ipi~D--~ 80 (196)
T PRK13793 14 QPFHLAHMQTIE----IALQQ---SRYVIL--ALGSAQMERNIKNPFLAIEREQMILSNFSLD--EQKRIRFVHVVD--V 80 (196)
T ss_pred CCCcHHHHHHHH----HHHHh---CCEEEE--EEccCCCCCCCCCCCCHHHHHHHHHHhcchh--hcceEEEEecCC--c
Confidence 499999999987 45665 243333 24543 344477778888777666421 344666666642 2
Q ss_pred CCChhHHHHHHHHHHhc
Q 015787 328 YAGPTEVQWHAKARINA 344 (400)
Q Consensus 328 yAGPREallHAiiRkNy 344 (400)
-++++|-+-+++--
T Consensus 81 ---~~~~~Wv~~V~~~v 94 (196)
T PRK13793 81 ---YNDEKWVKQVKSLV 94 (196)
T ss_pred ---cchhHHHHHHHHhc
Confidence 37899999998765
No 58
>PLN02388 phosphopantetheine adenylyltransferase
Probab=76.03 E-value=14 Score=34.64 Aligned_cols=99 Identities=21% Similarity=0.323 Sum_probs=60.5
Q ss_pred CCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEE----ecccCCCC-CC-CCChHHHHHHHHHHHHcCCCCCCc
Q 015787 243 ADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPLGGYTK-AD-DVPLSWRMKQHEKVLEDGVLDPET 316 (400)
Q Consensus 243 w~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll----~PlvG~tK-~d-Di~~~~R~r~ye~ll~~~y~p~~~ 316 (400)
-+.|++.=|-+.+|+||..|++.|.+.|.+ .++| +|+....+ +. =.+.+.|++..+.++.. +.++.
T Consensus 19 ~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~------~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~--~~p~~ 90 (177)
T PLN02388 19 YGAVVLGGTFDRLHDGHRLFLKAAAELARD------RIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKS--IKPEL 90 (177)
T ss_pred CCeEEEEecCCccCHHHHHHHHHHHHhhhc------CEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHH--cCCCc
Confidence 356888889999999999999865443321 1222 33332221 22 24789999999999983 44443
Q ss_pred EEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCC
Q 015787 317 TVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMG 359 (400)
Q Consensus 317 ~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG 359 (400)
.+.+.|..=.|+ |. +. +=....+||+.+...-|
T Consensus 91 -~~~i~~i~D~~G-pt------~~--~~~~d~LVVS~ET~~g~ 123 (177)
T PLN02388 91 -VVQAEPIIDPYG-PS------IV--DENLEAIVVSKETLPGG 123 (177)
T ss_pred -eEEEEEecCCCC-Cc------cc--CCCCCEEEEcHhHhhhH
Confidence 244556655554 43 11 22456688888765544
No 59
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=75.21 E-value=4.4 Score=42.24 Aligned_cols=98 Identities=14% Similarity=0.247 Sum_probs=30.4
Q ss_pred eEEeee-CCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCC---CChHHHHHHHHHHHHcCCCCCCcEEEEe
Q 015787 246 VFAFQL-RNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADD---VPLSWRMKQHEKVLEDGVLDPETTVVSI 321 (400)
Q Consensus 246 VvAfQt-RNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dD---i~~~~R~r~ye~ll~~~y~p~~~~~l~~ 321 (400)
|+|.-+ =||+|+||.|++..+ .+. ++++.+++..-+-..+.|+ ++..+|-++ .++.| -|-|+=-+
T Consensus 3 ~~GIIaEYNPFHnGH~y~i~~~----k~~-~~ad~ii~vMSGnFvQRGEPAi~dKw~RA~~---AL~~G---aDLViELP 71 (388)
T PF05636_consen 3 VVGIIAEYNPFHNGHLYQIEQA----KKI-TGADVIIAVMSGNFVQRGEPAIIDKWTRAEM---ALKNG---ADLVIELP 71 (388)
T ss_dssp ----E---TT--HHHHHHHHHH----H----TSSEEEEEE--TTSBTSSB-SS-HHHHHHH---HHHHT----SEEEE--
T ss_pred CCCeEEeECCccHHHHHHHHHH----hcc-CCCCEEEEEECCCcccCCCeeeCCHHHHHHH---HHHcC---CCEEEECC
Confidence 455553 699999999998754 333 2345566666666667776 667777663 34434 34332122
Q ss_pred CCCC----CCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCC
Q 015787 322 FPSP----MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMG 359 (400)
Q Consensus 322 lp~~----mryAGPREallHAiiRkNyGcThfIVGRDHAGvG 359 (400)
++.+ -.||---=.++ ...||+++.+|-++..+.
T Consensus 72 ~~~a~qsA~~FA~gaV~lL-----~~lgvd~l~FGsE~~~~~ 108 (388)
T PF05636_consen 72 VVYALQSAEYFARGAVSLL-----NALGVDYLSFGSESGDIE 108 (388)
T ss_dssp -G----------------------------------------
T ss_pred Ccccccccccccccccccc-----cccccccccccccccccc
Confidence 2222 22331111233 457899999999987765
No 60
>PRK07143 hypothetical protein; Provisional
Probab=75.14 E-value=27 Score=34.97 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=59.2
Q ss_pred CceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEE--ecccC-CCCCC-CCChHHHHHHHHHHHHcCCCCCCcEEE
Q 015787 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL--HPLGG-YTKAD-DVPLSWRMKQHEKVLEDGVLDPETTVV 319 (400)
Q Consensus 244 ~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll--~PlvG-~tK~d-Di~~~~R~r~ye~ll~~~y~p~~~~~l 319 (400)
..|+++=.-+-+|+||..|++.| .+.+.+ ..++. ||..- ..++. -.+.+.|++..+.+ --+.+++
T Consensus 16 ~~vvaiG~FDGvH~GHq~Ll~~a----~~~~~~-~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~------Gvd~~~~ 84 (279)
T PRK07143 16 KPTFVLGGFESFHLGHLELFKKA----KESNDE-IVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL------GFKNIIL 84 (279)
T ss_pred CeEEEEccCCcCCHHHHHHHHHH----HHCCCc-EEEEEeCChHHhcccCcccCCCHHHHHHHHHHC------CCCEEEE
Confidence 36888889999999999999754 454311 11222 22210 01111 24455676654432 2245555
Q ss_pred EeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCC-CCC
Q 015787 320 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA-GMG 359 (400)
Q Consensus 320 ~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHA-GvG 359 (400)
-.|...+.--.|.|=+-+ ++ + +++.+++||.|+. |=+
T Consensus 85 ~~F~~~~a~ls~e~Fi~~-ll-~-l~~~~iVvG~Df~FG~~ 122 (279)
T PRK07143 85 LDFNEELQNLSGNDFIEK-LT-K-NQVSFFVVGKDFRFGKN 122 (279)
T ss_pred eCCCHHHhCCCHHHHHHH-HH-h-cCCCEEEECCCcccCCC
Confidence 444445555677655443 44 4 9999999999987 543
No 61
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=73.49 E-value=4.1 Score=40.84 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=29.8
Q ss_pred CCHHHHHHHHH-hcCCCceEEee-eCCCCchhHHHHHHHHH
Q 015787 229 LSPAQLRDEFS-KRNADAVFAFQ-LRNPVHNGHALLMTDTR 267 (400)
Q Consensus 229 ~tP~e~R~~f~-~~gw~~VvAfQ-tRNPlHRaHe~l~r~~~ 267 (400)
.|.+++|+..+ .|.-.+-+||. |=+-+|.||-.|++.|+
T Consensus 5 ~ti~~lr~~~~~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~ 45 (285)
T COG0414 5 TTIAELRQAIKALRKEGKRVGLVPTMGNLHEGHLSLVRRAK 45 (285)
T ss_pred ehHHHHHHHHHHHHHcCCEEEEEcCCcccchHHHHHHHHHh
Confidence 47889998776 22223458998 99999999999998543
No 62
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=70.38 E-value=4.2 Score=40.79 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhc-CCCceEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHH
Q 015787 229 LSPAQLRDEFSKR-NADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWR 299 (400)
Q Consensus 229 ~tP~e~R~~f~~~-gw~~VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R 299 (400)
.|.+|+|+..+.. .-.+-+||. |=.-+|.||..|++.|++ +.....-.+|+||+=-. ..+|+...-|
T Consensus 5 ~~i~el~~~~~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~~---~~d~vVVSIFVNP~QF~-~~eD~~~YPR 73 (280)
T PF02569_consen 5 RTISELREWIRAWRKAGKTIGFVPTMGALHEGHLSLIRRARA---ENDVVVVSIFVNPTQFG-PNEDFDKYPR 73 (280)
T ss_dssp -SHHHHHHHHHHHHHTTSSEEEEEE-SS--HHHHHHHHHHHH---HSSEEEEEE---GGGSS-TTSHTTTS--
T ss_pred ccHHHHHHHHHHHHHcCCeEEEECCCchhhHHHHHHHHHHHh---CCCEEEEEECcCcccCC-CcchhhhCCC
Confidence 4788999888642 124678888 999999999999985532 32111124777886443 4466654443
No 63
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=65.21 E-value=37 Score=35.34 Aligned_cols=98 Identities=21% Similarity=0.282 Sum_probs=54.3
Q ss_pred eEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCC-CCCCC---CChHHHHHHHHHHHHcCCCCCCcEEEE
Q 015787 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY-TKADD---VPLSWRMKQHEKVLEDGVLDPETTVVS 320 (400)
Q Consensus 246 VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~-tK~dD---i~~~~R~r~ye~ll~~~y~p~~~~~l~ 320 (400)
++|+- -=||.|+||+++++.|+ +. ++++ ..+--+.|. ++-|. ++...|.+ - .+. ..-.++
T Consensus 3 ~~Gii~eyNPfHnGH~y~i~~Ar----~~-~~~d-~~i~~msgdf~qRgepai~~k~~r~~--~-aL~-----~g~D~V- 67 (358)
T COG1323 3 SIGIIAEYNPFHNGHQYHINKAR----EE-FKGD-EIIAVMSGDFTQRGEPAIGHKWERKK--M-ALE-----GGADLV- 67 (358)
T ss_pred ceeeeeecCcccccHHHHHHHHH----Hh-ccCC-ceEEeeecchhhcCCCccccHHHHHh--h-hhh-----cCceEE-
Confidence 45555 46999999999998653 32 2333 444444443 33333 23333322 1 222 111222
Q ss_pred eCCCCCCCCCh---hHHHHHHHHHHhcCCcEEEecCCCCCCC
Q 015787 321 IFPSPMHYAGP---TEVQWHAKARINAGANFYIVGRDPAGMG 359 (400)
Q Consensus 321 ~lp~~mryAGP---REallHAiiRkNyGcThfIVGRDHAGvG 359 (400)
+|++.-|+|- -=|.--..+-.|.||+.+.+|-.+-|+-
T Consensus 68 -IelP~~~s~q~a~~fa~~av~il~~l~~~~i~fgse~~~i~ 108 (358)
T COG1323 68 -IELPLERSGQGAPYFATRAVRILNALGGDDIAFGSPPMGIM 108 (358)
T ss_pred -EEcceEEecCCCchhhHHHHHHHHhcCCCeEEEeCCCCchH
Confidence 3444444432 2233445677899999999999887775
No 64
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=62.92 E-value=4.8 Score=40.35 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHh-cCCCceEEee-eCCCCchhHHHHHHHHHH
Q 015787 229 LSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDTRR 268 (400)
Q Consensus 229 ~tP~e~R~~f~~-~gw~~VvAfQ-tRNPlHRaHe~l~r~~~~ 268 (400)
.|++|+|+..+. +...+-+||. |=.=+|+||..|++.+++
T Consensus 5 ~~~~~l~~~~~~~~~~g~~ig~VpTmG~LH~GH~~LI~~a~~ 46 (282)
T TIGR00018 5 ETIPLLRQYIRQLRMEGKTVGFVPTMGNLHDGHMSLIDRAVA 46 (282)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 478899988864 2223567776 433399999999985543
No 65
>PLN02660 pantoate--beta-alanine ligase
Probab=59.08 E-value=6.6 Score=39.48 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHh-cCCCceEEee-eCCCCchhHHHHHHHHH
Q 015787 229 LSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDTR 267 (400)
Q Consensus 229 ~tP~e~R~~f~~-~gw~~VvAfQ-tRNPlHRaHe~l~r~~~ 267 (400)
.|++|+|+..+. +.-.+-+||. |=.=+|+||..|++.++
T Consensus 4 ~~~~~lr~~~~~~~~~g~~igfVpTmG~LH~GH~~LI~~a~ 44 (284)
T PLN02660 4 RDKAAMRAWSRAQRAQGKRIALVPTMGYLHEGHLSLVRAAR 44 (284)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEEcCchhhHHHHHHHHHHH
Confidence 478899988764 2223567887 43339999999998543
No 66
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=55.97 E-value=17 Score=30.42 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=39.8
Q ss_pred EEEeeeEEEeccCCCCCCCCcccCCHHHHHHHHHhcCCCceEEeeeCCCCch------hHHHHHHHHHHHHHHhcCCCCc
Q 015787 206 WLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHN------GHALLMTDTRRRLLEMGYQNPI 279 (400)
Q Consensus 206 ~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvAfQtRNPlHR------aHe~l~r~~~~~ale~~~~~~~ 279 (400)
+||+|+++++.. ++ +..=.+.-+.++++|.. |+ ||.+. -.+.-|+.+.+++. ++|.
T Consensus 1 iYIaGPmtG~~~--~N------~~~f~~~a~~L~~~G~~-vv-----nPa~~~~~~~~~~~~ym~~~l~~L~----~cD~ 62 (92)
T PF14359_consen 1 IYIAGPMTGLPD--YN------RPAFNAAAKRLRAKGYE-VV-----NPAELGIPEGLSWEEYMRICLAMLS----DCDA 62 (92)
T ss_pred CeEeCCcCCCcc--hH------HHHHHHHHHHHHHCCCE-Ee-----CchhhCCCCCCCHHHHHHHHHHHHH----hCCE
Confidence 489999997752 11 11223445566777743 33 78777 44555565544333 2577
Q ss_pred EEEecccCCCCCCCC
Q 015787 280 LLLHPLGGYTKADDV 294 (400)
Q Consensus 280 Lll~PlvG~tK~dDi 294 (400)
+.+.| ||.++-.-
T Consensus 63 i~~l~--gWe~S~GA 75 (92)
T PF14359_consen 63 IYMLP--GWENSRGA 75 (92)
T ss_pred EEEcC--CcccCcch
Confidence 77765 88766543
No 67
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=54.55 E-value=26 Score=29.20 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=30.4
Q ss_pred EEecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCcccc
Q 015787 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIYK 175 (400)
Q Consensus 138 ~L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif~ 175 (400)
.+.++.++|+ +|+.||.|.|..+.|++.+...+++--+
T Consensus 32 ~v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~~~~~i~ 71 (116)
T cd02786 32 TLLIHPADAAARGIADGDLVVVFNDRGSVTLRAKVTDDVP 71 (116)
T ss_pred EEEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCCCC
Confidence 3467777776 5789999999999999999988877443
No 68
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=53.84 E-value=30 Score=28.60 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=29.0
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCcccc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIYK 175 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif~ 175 (400)
+-++.++|+ +|+.||.|.|..+.|.+.+...+++--.
T Consensus 37 v~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~i~~~i~ 75 (116)
T cd02790 37 VEINPEDAKRLGIEDGEKVRVSSRRGSVEVRARVTDRVP 75 (116)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCCcC
Confidence 456777776 5689999999998899888888776443
No 69
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=52.52 E-value=30 Score=29.44 Aligned_cols=37 Identities=14% Similarity=0.004 Sum_probs=29.1
Q ss_pred EEecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCccc
Q 015787 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (400)
Q Consensus 138 ~L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif 174 (400)
++.++.++++ +|+.||.|.|.+..|.+.+...+++-=
T Consensus 34 ~v~inp~dA~~~gi~~Gd~V~v~s~~G~~~~~v~v~~~i 72 (130)
T cd02781 34 VAEINPETAAKLGIADGDWVWVETPRGRARQKARLTPGI 72 (130)
T ss_pred EEEECHHHHHHcCCCCCCEEEEECCCCEEEEEEEECCCC
Confidence 3556777776 568999999999899998888777643
No 70
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=52.02 E-value=1.6e+02 Score=26.52 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=53.9
Q ss_pred ceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccCC------CCCCCCChHHHHHHHHHHHHcCCCCCCcEE
Q 015787 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY------TKADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (400)
Q Consensus 245 ~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG~------tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~ 318 (400)
+|...=+-+|+|.||..+++. |.+.|- + +-||.=+... +..-=++.+.|+.+.+++ + |.+ .++
T Consensus 4 rV~~~G~FDl~H~GHi~~L~~----A~~lg~-~-d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~-~--~Vd--~Vi 72 (150)
T cd02174 4 RVYVDGCFDLFHYGHANALRQ----AKKLGP-N-DYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHC-K--WVD--EVV 72 (150)
T ss_pred EEEEeCccCCCCHHHHHHHHH----HHHhCC-C-CEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhc-C--CCC--eEE
Confidence 455556899999999999874 456631 1 2333333221 112348899999988875 3 443 343
Q ss_pred EEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 015787 319 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (400)
Q Consensus 319 l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHA 356 (400)
+. -|. +..+. +-+.++|+.++.|-|..
T Consensus 73 ~~-~~~-----~~~~~-----~i~~~~~d~vv~G~d~~ 99 (150)
T cd02174 73 EG-APY-----VTTPE-----FLDKYKCDYVAHGDDIY 99 (150)
T ss_pred EC-CCC-----CChHH-----HHHHhCCCEEEECCCCC
Confidence 32 121 11222 23478999999998865
No 71
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=51.15 E-value=30 Score=28.66 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=28.6
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCccc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif 174 (400)
+-++.++|+ +|+.||.|.|.++.|.+.+...+++--
T Consensus 37 v~inp~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~i 74 (120)
T cd00508 37 VEIHPEDAARLGIKDGDLVRVSSRRGSVVVRARVTDRV 74 (120)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCCc
Confidence 456777776 568999999999899998888877643
No 72
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=50.67 E-value=36 Score=28.66 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=29.9
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCcccc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIYK 175 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif~ 175 (400)
+.++.++|+ +|+.||.|.|.++.|.+.+...+++--.
T Consensus 35 v~in~~dA~~lgi~~Gd~V~v~s~~G~i~~~~~~~~~i~ 73 (115)
T cd02779 35 IEVNPEDAKREGLKNGDLVEVYNDYGSTTAMAYVTNTVK 73 (115)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCCcC
Confidence 457777776 5689999999999999999998887543
No 73
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=50.51 E-value=41 Score=28.14 Aligned_cols=37 Identities=14% Similarity=0.041 Sum_probs=29.5
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCcccc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIYK 175 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif~ 175 (400)
+.++.++|+ +|+.||.|.|.++.|++.+.+.+++--+
T Consensus 37 v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~v~~~i~ 75 (122)
T cd02792 37 VEISPELAAERGIKNGDMVWVSSPRGKIKVKALVTDRVK 75 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCCcC
Confidence 446777766 5689999999999999999998877543
No 74
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=49.88 E-value=39 Score=28.68 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=31.3
Q ss_pred EEecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCccccC
Q 015787 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIYKH 176 (400)
Q Consensus 138 ~L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif~~ 176 (400)
.+.++.++|+ +|+.||.|.|..+.|++.+...+++--+.
T Consensus 33 ~v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~a~~~~~v~~ 73 (124)
T cd02785 33 RVKINPIDAAARGIAHGDLVEVYNDRGSVVCKAKVDDGIQP 73 (124)
T ss_pred eEEECHHHHHHcCCCCCCEEEEEeCCCEEEEEEEECCCcCC
Confidence 3467887776 57899999999999999999988775443
No 75
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=49.72 E-value=42 Score=30.36 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=54.3
Q ss_pred ceEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecc----cCCCC---CCCCChHHHHHHHHHHHHcCCCCCCc
Q 015787 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPL----GGYTK---ADDVPLSWRMKQHEKVLEDGVLDPET 316 (400)
Q Consensus 245 ~VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~Pl----vG~tK---~dDi~~~~R~r~ye~ll~~~y~p~~~ 316 (400)
+|+-+- +-+|+|.||..+++. |.+.| +-|++--. +-..| .--++.+.|+...++ ++ +.+ .
T Consensus 3 ~iv~~~G~FD~~H~GHi~~L~~----A~~lg---d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~-~~--~Vd--~ 70 (152)
T cd02173 3 KVVYVDGAFDLFHIGHIEFLEK----ARELG---DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLA-CR--YVD--E 70 (152)
T ss_pred eEEEEcCcccCCCHHHHHHHHH----HHHcC---CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHh-cC--CCC--E
Confidence 455555 899999999999874 55664 43333221 11223 246899999998865 33 543 4
Q ss_pred EEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCC
Q 015787 317 TVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 357 (400)
Q Consensus 317 ~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAG 357 (400)
+++. -|. +.. .-+-+-++|+.++.|-|..+
T Consensus 71 V~v~-~~~-----~~~-----~~~~~~~~~d~vv~G~d~~~ 100 (152)
T cd02173 71 VVIG-APY-----VIT-----KELIEHFKIDVVVHGKTEET 100 (152)
T ss_pred EEEC-CCC-----cch-----HHHHHHhCCCEEEECCCCcc
Confidence 4442 111 211 12235699999999988654
No 76
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=49.71 E-value=30 Score=28.91 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=29.1
Q ss_pred EEecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCc
Q 015787 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (400)
Q Consensus 138 ~L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~e 172 (400)
.+.++.++|+ +|+.||.|.+.++.|.+.+...+++
T Consensus 32 ~v~i~p~dA~~lgI~dGd~V~v~s~~G~i~~~a~v~~ 68 (112)
T cd02787 32 VVFMNPDDIARLGLKAGDRVDLESAFGDGQGRIVRGF 68 (112)
T ss_pred EEEECHHHHHHhCCCCCCEEEEEecCCCCeEEEEecc
Confidence 4567777776 5689999999999999998888876
No 77
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=49.49 E-value=21 Score=29.29 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=27.2
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCcc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~ei 173 (400)
+-++.++|+ +|+.||.|.|..+.|.+.+...+++-
T Consensus 32 v~inp~dA~~~Gi~~Gd~V~v~s~~G~v~~~v~~~~~ 68 (110)
T PF01568_consen 32 VEINPEDAAKLGIKDGDWVRVSSPRGSVEVRVKVTDG 68 (110)
T ss_dssp EEEEHHHHHHCT--TTCEEEEEETTEEEEEEEEEETT
T ss_pred EEEcHHHHHHhcCcCCCEEEEEeccceEeeeeEEecC
Confidence 346777766 56899999999999999999988873
No 78
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=49.29 E-value=1.3e+02 Score=29.72 Aligned_cols=104 Identities=14% Similarity=0.053 Sum_probs=68.0
Q ss_pred HHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcE
Q 015787 269 RLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANF 348 (400)
Q Consensus 269 ~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcTh 348 (400)
..++.| .+++++.=..|+. --++.+-|++-.+.+++ ....+.-+++.. . . +-+|++=.+...++.||.-
T Consensus 29 ~l~~~G--v~gi~v~GstGE~--~~Ls~eEr~~l~~~~~~--~~~~~~pvi~gv---~-~-~t~~~i~~a~~a~~~Gad~ 97 (289)
T cd00951 29 WLLSYG--AAALFAAGGTGEF--FSLTPDEYAQVVRAAVE--ETAGRVPVLAGA---G-Y-GTATAIAYAQAAEKAGADG 97 (289)
T ss_pred HHHHcC--CCEEEECcCCcCc--ccCCHHHHHHHHHHHHH--HhCCCCCEEEec---C-C-CHHHHHHHHHHHHHhCCCE
Confidence 455665 5678765444432 23788899999999888 344332233322 1 2 7899999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeecc
Q 015787 349 YIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKAS 397 (400)
Q Consensus 349 fIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc 397 (400)
+++ +. .||.+.....+++.|..+ .+-.+++.++|+
T Consensus 98 v~~------~p------P~y~~~~~~~i~~~f~~v--~~~~~~pi~lYn 132 (289)
T cd00951 98 ILL------LP------PYLTEAPQEGLYAHVEAV--CKSTDLGVIVYN 132 (289)
T ss_pred EEE------CC------CCCCCCCHHHHHHHHHHH--HhcCCCCEEEEe
Confidence 998 22 355444456777777544 334567777775
No 79
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=48.63 E-value=62 Score=33.19 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=37.1
Q ss_pred eEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEe----cccCCCCCCCCChHHHHHHHHHHHH
Q 015787 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH----PLGGYTKADDVPLSWRMKQHEKVLE 308 (400)
Q Consensus 246 VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~----PlvG~tK~dDi~~~~R~r~ye~ll~ 308 (400)
|+.-=|-+.+|-||..|++. |.+.| +.|+|- .++...|.-..|++.|++..+.+|+
T Consensus 3 V~vgGTFD~lH~GH~~lL~~----A~~~g---d~LiVgvt~D~~~~~~k~~~~~~e~R~~~v~~fl~ 62 (322)
T PRK01170 3 TVVGGTFSKLHKGHKALLKK----AIETG---DEVVIGLTSDEYVRKNKVYPIPYEDRKRKLENFIK 62 (322)
T ss_pred EEEccccccCChHHHHHHHH----HHHcC---CEEEEEEccHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 33334899999999999873 55664 333332 1222233222999999999999996
No 80
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=48.50 E-value=1.8 Score=42.13 Aligned_cols=47 Identities=26% Similarity=0.483 Sum_probs=36.7
Q ss_pred EEecCHHHHHhcCCCCeEEEEcCCCcEEEEEEeCccccC------CHHHHHHHhhCCCCC
Q 015787 138 VLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKH------PKEERIARTWGTTAP 191 (400)
Q Consensus 138 ~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~eif~~------dk~~ea~~vfGT~d~ 191 (400)
=+.|..+.+..++.|..+.|-+ +|.+++||+. -.++..+++|||||+
T Consensus 20 EvlvdP~~a~~~R~g~~vdlee-------vLa~~~Vf~da~KG~~Ase~dL~k~FgTtd~ 72 (234)
T COG1500 20 EVLVDPNKALEYREGKEVDLEE-------VLATETVFKDASKGEKASEEDLKKAFGTTDP 72 (234)
T ss_pred EEEECHhHHHHHHcCCCCCHHH-------HHhHHHHHHhccccccCCHHHHHHHhCCCCH
Confidence 3446677788899999988865 6778899987 245678999999994
No 81
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=47.96 E-value=76 Score=32.85 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=53.8
Q ss_pred CceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEE--Eecc--cCCC-CCCCCChHHHHHHHHHHHHcCCCCCCcEE
Q 015787 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILL--LHPL--GGYT-KADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (400)
Q Consensus 244 ~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Ll--l~Pl--vG~t-K~dDi~~~~R~r~ye~ll~~~y~p~~~~~ 318 (400)
.+|++.=+-+-+|.||..+++. |.+.| +-|. +||- +... .+-=.+.+-|++..+.+ ++. +.++
T Consensus 12 ~~v~~~G~FD~vH~GH~~~L~q----Ak~~g---~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~---~~V--D~Vv 79 (353)
T PTZ00308 12 IRVWVDGCFDMLHFGHANALRQ----ARALG---DELFVGCHSDEEIMRNKGPPVMHQEERYEALRAC---KWV--DEVV 79 (353)
T ss_pred EEEEEEeecccCCHHHHHHHHH----HHHhC---CEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhc---CCc--cEEE
Confidence 5677777999999999999974 45553 3232 3332 1111 11256778888877654 111 2333
Q ss_pred EEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 015787 319 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (400)
Q Consensus 319 l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHA 356 (400)
+ .+|....+ + .+ +-++|.++++|-|..
T Consensus 80 ~-~~p~~~~~----~-----fI-~~l~~d~vv~GdD~~ 106 (353)
T PTZ00308 80 E-GYPYTTRL----E-----DL-ERLECDFVVHGDDIS 106 (353)
T ss_pred E-CCCCCchH----H-----HH-HHhCCCEEEECCCCC
Confidence 3 13443211 2 22 679999999999976
No 82
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=46.57 E-value=40 Score=36.59 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHhcCCCceEEee-eCCCCchhHHHHHHHH
Q 015787 229 LSPAQLRDEFSKRNADAVFAFQ-LRNPVHNGHALLMTDT 266 (400)
Q Consensus 229 ~tP~e~R~~f~~~gw~~VvAfQ-tRNPlHRaHe~l~r~~ 266 (400)
.|++|+|+......-+ -+||. |=.-+|.||..|++.|
T Consensus 5 ~~~~~l~~~~~~~~~~-~ig~VPTMG~LH~GHlsLi~~A 42 (512)
T PRK13477 5 RTVAGLRAWLRQQRSE-TIGFVPTMGALHQGHLSLIRRA 42 (512)
T ss_pred ecHHHHHHHHHHhcCC-cEEEECCCcchhHHHHHHHHHH
Confidence 4789999998763223 67888 9999999999999854
No 83
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=46.35 E-value=20 Score=27.32 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=19.6
Q ss_pred EEecCHHHHHhcCCC---------CeEEEEcCCCcEEEEEEeC
Q 015787 138 VLAIDDEQKRRIGES---------TRVALVDSDDNVVAILNDI 171 (400)
Q Consensus 138 ~L~v~~e~a~~l~~G---------~~vaL~d~eG~~vAiL~V~ 171 (400)
+++++++++..+.-| +.++..+++|+++|+++-.
T Consensus 3 ~~~ls~~ea~~l~~Gr~l~~~~~~g~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 3 VRELSAEEARDLRHGRRLPAAGPPGPVAAFAPDGRLVALLEER 45 (56)
T ss_dssp EEE--HHHHHHHHTT---B-----S-EEEE-TTS-EEEEEEEE
T ss_pred ceECCHHHHHHHhCCCccCCCCCCceEEEECCCCcEEEEEEcc
Confidence 446666666665433 4566678899999999643
No 84
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=45.88 E-value=28 Score=34.80 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHhcC-CCceEEee-eCCCCchhHHHHHHHHHH
Q 015787 229 LSPAQLRDEFSKRN-ADAVFAFQ-LRNPVHNGHALLMTDTRR 268 (400)
Q Consensus 229 ~tP~e~R~~f~~~g-w~~VvAfQ-tRNPlHRaHe~l~r~~~~ 268 (400)
.|.+|+|+.+.... -.+-+||- |=.=+|+||..|++.+++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~i~~v~tmG~lH~GH~~Li~~a~~ 46 (281)
T PRK00380 5 TTIAELRAALRRWRREGKRIGLVPTMGALHEGHLSLVREARA 46 (281)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEEccCceeHHHHHHHHHHHH
Confidence 46888888875421 12345555 433399999999985543
No 85
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=45.85 E-value=41 Score=28.25 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=28.7
Q ss_pred EEecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCc
Q 015787 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (400)
Q Consensus 138 ~L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~e 172 (400)
++.++.++++ +|+.||.|.|..+.|.+.+...+++
T Consensus 32 ~v~i~p~dA~~lgi~~Gd~V~v~~~~G~v~~~v~~~~ 68 (106)
T cd02789 32 YCEINPEDYKLLGKPEGDKVKVTSEFGEVVVFAKENE 68 (106)
T ss_pred EEEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECC
Confidence 4567777777 5689999999998899888888776
No 86
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=45.83 E-value=41 Score=27.59 Aligned_cols=34 Identities=6% Similarity=0.062 Sum_probs=27.9
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~e 172 (400)
+.++.++++ +|+.||.|.|..+.|.+.+...+++
T Consensus 31 v~inp~dA~~lGi~~Gd~V~v~s~~G~i~~~v~v~~ 66 (96)
T cd02788 31 ARLSPADAARLGLADGDLVEFSLGDGTLTLPVQISK 66 (96)
T ss_pred EEECHHHHHHcCCCCCCEEEEEECCeEEEEEEEECC
Confidence 457777777 5689999999998899888888766
No 87
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=45.58 E-value=52 Score=30.53 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=38.6
Q ss_pred eEEee-eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecc----cCC-CCCCCCChHHHHHHHHHHHHc
Q 015787 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPL----GGY-TKADDVPLSWRMKQHEKVLED 309 (400)
Q Consensus 246 VvAfQ-tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~Pl----vG~-tK~dDi~~~~R~r~ye~ll~~ 309 (400)
+||.= |-+++|.||..|+. .|.+.| ..+.|--. +.. .+..=.|+++|++-...++..
T Consensus 7 ~vavGGTFd~LH~GHk~LL~----~A~~~G---~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~ 69 (158)
T COG1019 7 KVAVGGTFDRLHDGHKKLLE----VAFEIG---DRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLES 69 (158)
T ss_pred EEEecccchhhhhhHHHHHH----HHHHhC---CeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHH
Confidence 45555 89999999999986 467776 33433211 111 344457889999988888874
No 88
>cd02780 MopB_CT_Tetrathionate_Arsenate-R This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of tetrathionate reductase, subunit A, (TtrA); respiratory arsenate As(V) reductase, catalytic subunit (ArrA); and other related proteins.
Probab=43.82 E-value=46 Score=29.14 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=29.7
Q ss_pred EEecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCccc
Q 015787 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (400)
Q Consensus 138 ~L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif 174 (400)
.+.++.++|+ +|+.||.|.|.+..|.+.+.+.+++--
T Consensus 31 ~v~inp~dA~~lgI~~Gd~V~v~s~~G~i~~~v~i~~~i 69 (143)
T cd02780 31 PVWINPEDAAKLGIKTGDRVRVVTPGGSVVGKAKVTEGV 69 (143)
T ss_pred EEEECHHHHHHcCCCCCCEEEEEeCCceEEEEEEECCCc
Confidence 3456777776 568999999999899999888887643
No 89
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=43.41 E-value=61 Score=27.19 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=29.0
Q ss_pred EEecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCccc
Q 015787 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (400)
Q Consensus 138 ~L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif 174 (400)
.+.++.++|+ +|+.||.|.|..+.|.+.+...+++-.
T Consensus 31 ~v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~v~v~~~v 69 (123)
T cd02778 31 TLWINPETAARLGIKDGDRVEVSSARGKVTGKARLTEGI 69 (123)
T ss_pred eEEECHHHHHHcCCCCCCEEEEEeCCCcEEEEEEEcCCc
Confidence 3456777766 568999999999899999888877743
No 90
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=42.94 E-value=1.8e+02 Score=28.95 Aligned_cols=104 Identities=13% Similarity=-0.004 Sum_probs=66.8
Q ss_pred HHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcE
Q 015787 269 RLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANF 348 (400)
Q Consensus 269 ~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcTh 348 (400)
..++.| .+++++.=..|+. --+..+-|.+..+.+.+ ....+.-+++.. . .+-+|++-.+.-.+..|++.
T Consensus 36 ~l~~~G--v~Gi~~~GstGE~--~~Lt~eEr~~~~~~~~~--~~~~~~pvi~gv---~--~~t~~~i~~~~~a~~~Gada 104 (303)
T PRK03620 36 WLAPYG--AAALFAAGGTGEF--FSLTPDEYSQVVRAAVE--TTAGRVPVIAGA---G--GGTAQAIEYAQAAERAGADG 104 (303)
T ss_pred HHHHcC--CCEEEECcCCcCc--ccCCHHHHHHHHHHHHH--HhCCCCcEEEec---C--CCHHHHHHHHHHHHHhCCCE
Confidence 455665 5678765444432 34788899999998888 334433334333 1 27789999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeecc
Q 015787 349 YIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKAS 397 (400)
Q Consensus 349 fIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc 397 (400)
+++-. .||-...-+.+.+.|..+ .+-..++.++|+
T Consensus 105 v~~~p------------P~y~~~~~~~i~~~f~~v--a~~~~lpi~lYn 139 (303)
T PRK03620 105 ILLLP------------PYLTEAPQEGLAAHVEAV--CKSTDLGVIVYN 139 (303)
T ss_pred EEECC------------CCCCCCCHHHHHHHHHHH--HHhCCCCEEEEc
Confidence 99922 344443446677766433 233456677775
No 91
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=42.72 E-value=52 Score=32.97 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHh-cCCCceEEee-eCCCCchhHHHHHHHHHH
Q 015787 229 LSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDTRR 268 (400)
Q Consensus 229 ~tP~e~R~~f~~-~gw~~VvAfQ-tRNPlHRaHe~l~r~~~~ 268 (400)
.|++|+|+..+. +.-.+-+||. |=.=+|+||..|++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ig~V~TmG~LH~GH~~LI~~a~~ 46 (277)
T cd00560 5 TTIAELRAWLRNWRAQGKTIGFVPTMGALHEGHLSLVRRARA 46 (277)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 378888888764 1123445554 533399999999985543
No 92
>PRK13671 hypothetical protein; Provisional
Probab=42.20 E-value=42 Score=34.03 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=43.6
Q ss_pred EeeeEEEeccCCCCCCCCcccCCHHHHHHHHHhcCCCceEEeeeCCCCchhHHHHH-HHHH-HHHHHhcCCCCcEEE
Q 015787 208 IGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLM-TDTR-RRLLEMGYQNPILLL 282 (400)
Q Consensus 208 vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvAfQtRNPlHRaHe~l~-r~~~-~~ale~~~~~~~Lll 282 (400)
+.|=|.-++|+|.+ --..+++..++.+.+.|+...+.||+||+.-.++ +..| ++|++.| .+|+|
T Consensus 2 ~~GIIaeFNP~H~G--------Hl~~~~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G---~DLVi 67 (298)
T PRK13671 2 AIGIIAEYNPFHNG--------HIYQINYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYG---VDKVI 67 (298)
T ss_pred ceeEEeeeCCccHH--------HHHHHHHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcC---CCEEE
Confidence 45777778887764 2456677777788899999999999999865551 1111 3566655 45666
No 93
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=42.06 E-value=50 Score=28.18 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=28.2
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCcc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~ei 173 (400)
+.++.++++ +|+.||.|.|..+.|.+.+...+++-
T Consensus 36 v~i~p~dA~~lgi~~Gd~V~v~s~~g~i~~~v~i~~~ 72 (127)
T cd02777 36 VWINPLDAAARGIKDGDIVRVFNDRGAVLAGARVTDR 72 (127)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCC
Confidence 556777766 56899999999989999888887764
No 94
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=41.60 E-value=2e+02 Score=28.01 Aligned_cols=104 Identities=14% Similarity=0.042 Sum_probs=66.3
Q ss_pred HHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEE-EEeCCCCCCCCChhHHHHHHHHHHhcCCc
Q 015787 269 RLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTV-VSIFPSPMHYAGPTEVQWHAKARINAGAN 347 (400)
Q Consensus 269 ~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~-l~~lp~~mryAGPREallHAiiRkNyGcT 347 (400)
.+++.| .+++++.=..|+. --+..+-|.+-.+.+.+ ....+..+ ..+-. ...+|++-.|...+..|++
T Consensus 29 ~l~~~G--v~gl~v~GstGE~--~~lt~~Er~~l~~~~~~--~~~~~~~vi~gv~~-----~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 29 FQIENG--TDGLVVCGTTGES--PTLSDEEHEAVIEAVVE--AVNGRVPVIAGTGS-----NNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred HHHHcC--CCEEEECCCCcch--hhCCHHHHHHHHHHHHH--HhCCCCcEEeccCC-----ccHHHHHHHHHHHHHcCCC
Confidence 455665 5678776444433 45888999999998888 34433333 33322 1568999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeecc
Q 015787 348 FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKAS 397 (400)
Q Consensus 348 hfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc 397 (400)
.+++.. . .||.+ ....+++.+..+ .+-..++.++|+
T Consensus 98 ~v~~~~-----P------~~~~~-~~~~l~~~~~~i--a~~~~~pi~lYn 133 (284)
T cd00950 98 AALVVT-----P------YYNKP-SQEGLYAHFKAI--AEATDLPVILYN 133 (284)
T ss_pred EEEEcc-----c------ccCCC-CHHHHHHHHHHH--HhcCCCCEEEEE
Confidence 999873 1 24444 346677666433 222345666664
No 95
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=41.60 E-value=52 Score=27.51 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=28.4
Q ss_pred EecCHHHHHh--cCCCCeEEEEcCCCcEEEEEEeCccc
Q 015787 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEIY 174 (400)
Q Consensus 139 L~v~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~eif 174 (400)
+-++.+++++ ++.||.|.+.+..|.+.+...+++--
T Consensus 37 v~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~i 74 (122)
T cd02791 37 VEIHPEDAARLGLKEGDLVRVTSRRGEVVLRVRVTDRV 74 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCCc
Confidence 4577777764 58999999999899988888776643
No 96
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=41.43 E-value=53 Score=39.30 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=60.7
Q ss_pred cCCCCCCCChhhhhcccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEEcC-CCcEEEEEEeCccccCCHHH
Q 015787 102 ASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDS-DDNVVAILNDIEIYKHPKEE 180 (400)
Q Consensus 102 fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~pwpiPI~L~v~~e~a~~l~~G~~vaL~d~-eG~~vAiL~V~eif~~dk~~ 180 (400)
|.+++.+++.+.|.+|- |+-+ -+.+.|+++..+.++.++.-.|+++ +|++...+.-.|+| ++
T Consensus 377 f~~yd~~~~~e~y~tv~---------~qN~----N~SV~VtDeFM~aVe~d~~w~L~~p~~gkv~ktV~AReLw----~k 439 (1220)
T PRK07562 377 FPTYDTDWDSEAYLTVS---------GQNS----NNSVRVTDEFLRAVENDGDWNLTARTDGKVAKTLKARDLW----EK 439 (1220)
T ss_pred ccccccccccchhcccc---------cccc----cceeccCHHHHHHHHCCCCeeeeccCCCceeeEeeHHHHH----HH
Confidence 77899999999999985 3322 3466788999999999999999875 68999999999999 44
Q ss_pred HHHHhhCCCCCCChhHH
Q 015787 181 RIARTWGTTAPGLPYVD 197 (400)
Q Consensus 181 ea~~vfGT~d~~HPgV~ 197 (400)
.++..|-|.| ||+.
T Consensus 440 I~~aawetGd---PgI~ 453 (1220)
T PRK07562 440 IGYAAWASAD---PGLQ 453 (1220)
T ss_pred HHHHHHHHCC---ceEE
Confidence 6777787766 6664
No 97
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=41.06 E-value=51 Score=28.37 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=28.7
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCcc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~ei 173 (400)
+.++.++|+ +|+.||.|.|.++.|.+.+...+++-
T Consensus 35 v~i~p~dA~~~gi~~Gd~V~v~s~~G~~~~~~~~~~~ 71 (129)
T cd02793 35 IRINPADAAARGIADGDIVRVFNDRGACLAGAVVTDG 71 (129)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCC
Confidence 567777766 67899999999989999988888663
No 98
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=40.71 E-value=53 Score=29.53 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=28.8
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~e 172 (400)
+.++.++|+ +|+.||.|.|..+.|.+.+.+.+.+
T Consensus 34 v~inp~dA~~~GI~dGd~V~v~s~~G~~~~~a~v~~ 69 (156)
T cd02783 34 LYMHPKTAKELGIKDGDWVWVESVNGRVKGQARFTE 69 (156)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeeEEEEEEECC
Confidence 567777776 5789999999999999998888876
No 99
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=39.28 E-value=47 Score=28.06 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=28.6
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCcc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~ei 173 (400)
+.++.++|+ +|+.||.|.|....|.+.+...+++-
T Consensus 32 v~i~p~~A~~~gi~~Gd~V~v~s~~g~i~~~a~~~~~ 68 (121)
T cd02794 32 VWINPLDAAARGIKDGDRVLVFNDRGKVIRPVKVTER 68 (121)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCC
Confidence 457777776 56899999999989999988887764
No 100
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=38.57 E-value=75 Score=27.04 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=30.0
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCccccC
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIYKH 176 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif~~ 176 (400)
+-++.++++ +|+.||.|.|....|.+.+...+++--+.
T Consensus 35 v~i~p~dA~~~gi~~Gd~V~v~s~~g~~~~~~~~~~~v~~ 74 (129)
T cd02782 35 LRIHPDDAAALGLADGDKVRVTSAAGSVEAEVEVTDDMMP 74 (129)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCCeEEEEEEECCCcCC
Confidence 456777776 56899999999989999988888775443
No 101
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=35.03 E-value=30 Score=30.84 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=43.7
Q ss_pred ccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEE
Q 015787 79 ATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALV 158 (400)
Q Consensus 79 ~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~pwpiPI~L~v~~e~a~~l~~G~~vaL~ 158 (400)
..+....|.+++++=|-.=.+.+ =||+.++|+++- .+.|.+ ++.+.-|++|..+.+.
T Consensus 60 ~kve~a~ie~~~~q~lY~dg~~~-----~FMD~etyeq~~--------------v~~~~~----~d~~~~l~eg~~v~v~ 116 (131)
T COG0231 60 DKVEVAIVERKTAQYLYIDGDFY-----VFMDLETYEQYE--------------LPKDQI----GDAAKFLKEGMEVEVL 116 (131)
T ss_pred CEEEEeEEeeeeEEEEEcCCCeE-----EEccCCCceEEE--------------ecchhh----hhHHHhcCCCCEEEEE
Confidence 34555666666655222212211 399999999985 244444 6778889999999886
Q ss_pred cCCCcEEEE
Q 015787 159 DSDDNVVAI 167 (400)
Q Consensus 159 d~eG~~vAi 167 (400)
--+|+++++
T Consensus 117 ~~~g~~i~v 125 (131)
T COG0231 117 LYNGEPIAV 125 (131)
T ss_pred EECCEEEEE
Confidence 668999886
No 102
>cd02776 MopB_CT_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. This CD (MopB_CT_Nitrate-R-NarG-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=34.64 E-value=73 Score=28.32 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=29.8
Q ss_pred EEecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCccc
Q 015787 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (400)
Q Consensus 138 ~L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif 174 (400)
.+.++.++++ +|+.||.|.+.+..|++.+...+++--
T Consensus 32 ~v~inp~dA~~lgI~dGd~V~v~~~~G~v~~~a~v~~~i 70 (141)
T cd02776 32 VVWMNPKDAAELGIKDNDWVEVFNDNGVVVARAKVSPRI 70 (141)
T ss_pred EEEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECCCc
Confidence 4567888776 678999999999889998888877643
No 103
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=34.55 E-value=64 Score=25.71 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.9
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~e 172 (400)
+-++.++++ +|+.||+|.|.+..|.+.+.+.+.+
T Consensus 25 v~~~~~da~~lgl~~Gd~v~v~~~~g~~~~~v~~~~ 60 (101)
T cd02775 25 VEINPEDAAALGIKDGDLVRVESRRGSVVLRAKVTD 60 (101)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCcEEEEEEEECC
Confidence 346666666 5689999999998999888887665
No 104
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=34.29 E-value=3.5e+02 Score=26.81 Aligned_cols=106 Identities=13% Similarity=0.077 Sum_probs=68.1
Q ss_pred HHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcE
Q 015787 269 RLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANF 348 (400)
Q Consensus 269 ~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcTh 348 (400)
..++.| .+++++.=..|+. --+..+-|.+..+.+++ ....+.-+++..- -.+-+|++-.|...+..||+.
T Consensus 29 ~~~~~G--v~gi~v~GstGE~--~~Ls~~Er~~l~~~~~~--~~~g~~pvi~gv~----~~~t~~ai~~a~~A~~~Gad~ 98 (294)
T TIGR02313 29 FQIEGG--SHAISVGGTSGEP--GSLTLEERKQAIENAID--QIAGRIPFAPGTG----ALNHDETLELTKFAEEAGADA 98 (294)
T ss_pred HHHHcC--CCEEEECccCccc--ccCCHHHHHHHHHHHHH--HhCCCCcEEEECC----cchHHHHHHHHHHHHHcCCCE
Confidence 445655 5678765444432 34788999999998887 3333322332221 146789999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEE-EeeeeeccC
Q 015787 349 YIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNIL-PFKVCKASD 398 (400)
Q Consensus 349 fIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~-p~~~~vYc~ 398 (400)
+++.. .||-+..-+.+++.|..+ .+-+ .++.++|+.
T Consensus 99 v~v~p------------P~y~~~~~~~l~~~f~~i--a~a~~~lpv~iYn~ 135 (294)
T TIGR02313 99 AMVIV------------PYYNKPNQEALYDHFAEV--ADAVPDFPIIIYNI 135 (294)
T ss_pred EEEcC------------ccCCCCCHHHHHHHHHHH--HHhccCCCEEEEeC
Confidence 99865 234343447788777543 3334 477777753
No 105
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=33.74 E-value=3.6e+02 Score=26.43 Aligned_cols=106 Identities=16% Similarity=0.021 Sum_probs=68.3
Q ss_pred HHHHh-cCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCc
Q 015787 269 RLLEM-GYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGAN 347 (400)
Q Consensus 269 ~ale~-~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcT 347 (400)
.+++. | .+++++.=..|+. --++.+-|.+-.+.+++ ....+..+++.... ...+|++-.|...+..|++
T Consensus 29 ~l~~~~G--v~gi~~~GstGE~--~~Lt~~Er~~~~~~~~~--~~~~~~~viagv~~----~~~~~ai~~a~~a~~~Gad 98 (288)
T cd00954 29 YLIEKQG--VDGLYVNGSTGEG--FLLSVEERKQIAEIVAE--AAKGKVTLIAHVGS----LNLKESQELAKHAEELGYD 98 (288)
T ss_pred HHHhcCC--CCEEEECcCCcCc--ccCCHHHHHHHHHHHHH--HhCCCCeEEeccCC----CCHHHHHHHHHHHHHcCCC
Confidence 45565 5 4678776555544 33678889999998887 33433223332211 3678999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEE-EeeeeeccC
Q 015787 348 FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNIL-PFKVCKASD 398 (400)
Q Consensus 348 hfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~-p~~~~vYc~ 398 (400)
-+++-. .||-+..-.+|++.|..+ .+-+ .++.++|+.
T Consensus 99 ~v~~~~------------P~y~~~~~~~i~~~~~~v--~~a~~~lpi~iYn~ 136 (288)
T cd00954 99 AISAIT------------PFYYKFSFEEIKDYYREI--IAAAASLPMIIYHI 136 (288)
T ss_pred EEEEeC------------CCCCCCCHHHHHHHHHHH--HHhcCCCCEEEEeC
Confidence 998763 244444456787777533 3445 467777753
No 106
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=33.38 E-value=2.7e+02 Score=27.39 Aligned_cols=106 Identities=12% Similarity=-0.047 Sum_probs=69.0
Q ss_pred HHHH-hcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCc
Q 015787 269 RLLE-MGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGAN 347 (400)
Q Consensus 269 ~ale-~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcT 347 (400)
..++ .| .+++++.=..|+. --+..+-|.+-.+.+++ ....+..+++..- -.+-+|++-.|.-.+..||+
T Consensus 32 ~l~~~~G--v~gi~v~GstGE~--~~Ls~eEr~~~~~~~~~--~~~~~~~viagvg----~~~t~~ai~~a~~a~~~Gad 101 (293)
T PRK04147 32 FNIEKQG--IDGLYVGGSTGEA--FLLSTEEKKQVLEIVAE--EAKGKVKLIAQVG----SVNTAEAQELAKYATELGYD 101 (293)
T ss_pred HHHhcCC--CCEEEECCCcccc--ccCCHHHHHHHHHHHHH--HhCCCCCEEecCC----CCCHHHHHHHHHHHHHcCCC
Confidence 3556 55 4678866555532 23778999999998888 3443322333221 14689999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeeccC
Q 015787 348 FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKASD 398 (400)
Q Consensus 348 hfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc~ 398 (400)
.++|-. . -||.+ ....+++.|..+ .+-++++.++|+.
T Consensus 102 ~v~v~~-----P------~y~~~-~~~~l~~~f~~v--a~a~~lPv~iYn~ 138 (293)
T PRK04147 102 AISAVT-----P------FYYPF-SFEEICDYYREI--IDSADNPMIVYNI 138 (293)
T ss_pred EEEEeC-----C------cCCCC-CHHHHHHHHHHH--HHhCCCCEEEEeC
Confidence 999863 2 24444 346677777543 3445677788853
No 107
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=32.67 E-value=63 Score=28.83 Aligned_cols=36 Identities=3% Similarity=-0.135 Sum_probs=28.6
Q ss_pred EecCHHHHH--hcCCCCeEEEEcCCCcEEEEEEeCccc
Q 015787 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (400)
Q Consensus 139 L~v~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~eif 174 (400)
+.++.++|+ +|+.||.|.|..+.|.+.+...|.+--
T Consensus 40 v~InP~dA~~lGI~dGD~V~V~s~~G~i~~~a~vt~~i 77 (137)
T cd02784 40 ALVSPRTAEALGLLQGDVVRIRRGGRTIELPVWIQPGH 77 (137)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECCCc
Confidence 456666665 679999999999899999888887643
No 108
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=31.38 E-value=61 Score=26.87 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHhcCCCCeEEEEcCCCcEEEEEEe
Q 015787 144 EQKRRIGESTRVALVDSDDNVVAILND 170 (400)
Q Consensus 144 e~a~~l~~G~~vaL~d~eG~~vAiL~V 170 (400)
+.++.++.|+.|.+.. .|+++|.|.=
T Consensus 16 ~lL~rV~aGEev~IT~-~G~PVArivp 41 (84)
T COG4118 16 ELLRRVRAGEEVIITK-RGRPVARLVP 41 (84)
T ss_pred HHHHHHhCCCEEEEee-CCeEEEEEee
Confidence 5567789999999997 9999999983
No 109
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=30.91 E-value=4.2e+02 Score=25.89 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=65.1
Q ss_pred HHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcE
Q 015787 269 RLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANF 348 (400)
Q Consensus 269 ~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcTh 348 (400)
..++.| .+++++.=..|+- --++.+-|.+-.+.+.+ ....+..+++..- -..-+|++-.|...+..||+-
T Consensus 27 ~l~~~G--v~Gi~~~GstGE~--~~Ls~~Er~~~~~~~~~--~~~~~~~vi~gv~----~~s~~~~i~~a~~a~~~Gad~ 96 (285)
T TIGR00674 27 FQIENG--TDAIVVVGTTGES--PTLSHEEHKKVIEFVVD--LVNGRVPVIAGTG----SNATEEAISLTKFAEDVGADG 96 (285)
T ss_pred HHHHcC--CCEEEECccCccc--ccCCHHHHHHHHHHHHH--HhCCCCeEEEeCC----CccHHHHHHHHHHHHHcCCCE
Confidence 455665 5678865444432 34788999999998888 3333332333221 125789999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeecc
Q 015787 349 YIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKAS 397 (400)
Q Consensus 349 fIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc 397 (400)
+++-. . .||. ..-..+++.|..+ .+-+.++.+.|+
T Consensus 97 v~v~p-----P------~y~~-~~~~~i~~~~~~i--~~~~~~pi~lYn 131 (285)
T TIGR00674 97 FLVVT-----P------YYNK-PTQEGLYQHFKAI--AEEVDLPIILYN 131 (285)
T ss_pred EEEcC-----C------cCCC-CCHHHHHHHHHHH--HhcCCCCEEEEE
Confidence 99843 1 2443 3346677666433 222345566665
No 110
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=30.29 E-value=1.1e+02 Score=33.35 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=55.4
Q ss_pred CCCCeEEEEcCCCcEE----EEEEeCcccc-------CCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE-EEecc
Q 015787 150 GESTRVALVDSDDNVV----AILNDIEIYK-------HPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL-EVLEP 217 (400)
Q Consensus 150 ~~G~~vaL~d~eG~~v----AiL~V~eif~-------~dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v-~~l~~ 217 (400)
-+|-.++++|++|+++ |.|.+..-|. .|.++..+..|+. -.+-|-.....+.|-+.+-|+. .+++.
T Consensus 347 ~pG~~~~vvdd~g~~~~~~~G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~--~y~tGD~~~~DedGy~~i~GR~DDvI~v 424 (528)
T COG0365 347 LPGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGR--WYRTGDWAERDEDGYFWLHGRSDDVIKV 424 (528)
T ss_pred CCCceeEEECCCCCcCCCCceEEEEeCCCchhhhhhhCCHHHHHHHHhhc--eeecCceeEEccCCCEEEEeeccceEec
Confidence 4788999999777766 7999998766 6777777776662 1111211112345666666655 45553
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhc
Q 015787 218 IKYHDGLDRFRLSPAQLRDEFSKR 241 (400)
Q Consensus 218 ~~~~~~f~~~r~tP~e~R~~f~~~ 241 (400)
..+|+.|+|+...+.+.
T Consensus 425 -------sG~Rig~~EvE~~l~~h 441 (528)
T COG0365 425 -------SGKRIGPLEIESVLLAH 441 (528)
T ss_pred -------cCeeccHHHHHHHHHhC
Confidence 26899999999998764
No 111
>PRK13760 putative RNA-associated protein; Provisional
Probab=28.01 E-value=35 Score=33.46 Aligned_cols=59 Identities=25% Similarity=0.452 Sum_probs=40.6
Q ss_pred EEecCHHHHHhcCCCCeEEEEcCCCcEEEEEEeCccccC------CHHHHHHHhhCCCCCCChhHHHHHHhcCC
Q 015787 138 VLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKH------PKEERIARTWGTTAPGLPYVDQAITYAGN 205 (400)
Q Consensus 138 ~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~eif~~------dk~~ea~~vfGT~d~~HPgV~~~~~~~g~ 205 (400)
...|+.+.+.+.+.|..+.|-+ +|.+++||.. -++++..++|||+|. --|...+-..|+
T Consensus 20 EI~v~p~~v~~~R~g~~~~l~e-------Vl~~~~VF~n~~kG~~As~~~L~~~FGT~d~--~~i~~~IL~kGe 84 (231)
T PRK13760 20 EILVDPDLALKFKEGKDVDIED-------VLAVEEVFKDAKKGDKASEESLKKVFGTTDP--LEIAEEIIKKGE 84 (231)
T ss_pred EEEECHHHHHHHHCCCCCCHHH-------HhccceEEecCccCCcCCHHHHHHHhCCCCH--HHHHHHHHhcCC
Confidence 4456788888899998887754 5667778877 246788999999983 344444433343
No 112
>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. hPOT1 is implicated in telomere length regulation.
Probab=27.86 E-value=65 Score=28.63 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=23.0
Q ss_pred cceeEEE-ecCHHHHHhcCCCCeEEEEc
Q 015787 133 MSVPIVL-AIDDEQKRRIGESTRVALVD 159 (400)
Q Consensus 133 wpiPI~L-~v~~e~a~~l~~G~~vaL~d 159 (400)
|+|+|++ +.-.+.+++||+||-|.|.+
T Consensus 60 ~ti~It~yD~H~~~ar~lK~GdfV~L~N 87 (123)
T cd04498 60 LTIDILVYDNHVELAKSLKPGDFVRIYN 87 (123)
T ss_pred EEEEEEEEcchHHHHhhCCCCCEEEEEE
Confidence 4899987 66667888899999999986
No 113
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=27.66 E-value=4.5e+02 Score=25.95 Aligned_cols=104 Identities=13% Similarity=-0.002 Sum_probs=66.7
Q ss_pred HHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcE
Q 015787 269 RLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANF 348 (400)
Q Consensus 269 ~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcTh 348 (400)
..++.| .+++++.=-.|+. --++.+-|.+-.+.+.+ ....+.-+++.. . ..-+|++-.|...+..|++-
T Consensus 34 ~l~~~G--v~gi~v~GstGE~--~~Lt~eEr~~v~~~~~~--~~~g~~pvi~gv---~--~~t~~ai~~a~~a~~~Gada 102 (296)
T TIGR03249 34 WLLGYG--LEALFAAGGTGEF--FSLTPAEYEQVVEIAVS--TAKGKVPVYTGV---G--GNTSDAIEIARLAEKAGADG 102 (296)
T ss_pred HHHhcC--CCEEEECCCCcCc--ccCCHHHHHHHHHHHHH--HhCCCCcEEEec---C--ccHHHHHHHHHHHHHhCCCE
Confidence 455665 5678865444433 23788899999998888 333332233332 2 24889999999999999998
Q ss_pred EEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeecc
Q 015787 349 YIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKAS 397 (400)
Q Consensus 349 fIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc 397 (400)
+++-. .||-+..-+.+++.|..+ .+-.+++.+.|.
T Consensus 103 v~~~p------------P~y~~~s~~~i~~~f~~v--~~a~~~pvilYn 137 (296)
T TIGR03249 103 YLLLP------------PYLINGEQEGLYAHVEAV--CESTDLGVIVYQ 137 (296)
T ss_pred EEECC------------CCCCCCCHHHHHHHHHHH--HhccCCCEEEEe
Confidence 88732 345444557777766433 333456667775
No 114
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=26.95 E-value=66 Score=25.28 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=22.5
Q ss_pred eEEEecCHHHHHhcCCCCeEEEEcCCCcEEEEEEe
Q 015787 136 PIVLAIDDEQKRRIGESTRVALVDSDDNVVAILND 170 (400)
Q Consensus 136 PI~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL~V 170 (400)
|=+..++.+ +++||.|.+.+++|+.+|+=..
T Consensus 22 ~GV~~~~~~----f~~gd~V~i~~~~g~~ia~G~a 52 (74)
T PF01472_consen 22 PGVVEVDGD----FRKGDEVAIVDEDGEVIAVGRA 52 (74)
T ss_dssp GGEEEEETT------TTSEEEEEETTSSEEEEEEE
T ss_pred HHhEECCCC----cCCCCEEEEEcCCCeEEEEEEE
Confidence 556666543 6789999999988999988653
No 115
>PRK13599 putative peroxiredoxin; Provisional
Probab=26.60 E-value=2.5e+02 Score=26.66 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=53.3
Q ss_pred ceeEEEecCHHHHHhcCC---------CCeEEEEcCCCcEEEEEEeCccccCCHHHHHHHh---hCCCCCCChhHHHHHH
Q 015787 134 SVPIVLAIDDEQKRRIGE---------STRVALVDSDDNVVAILNDIEIYKHPKEERIART---WGTTAPGLPYVDQAIT 201 (400)
Q Consensus 134 piPI~L~v~~e~a~~l~~---------G~~vaL~d~eG~~vAiL~V~eif~~dk~~ea~~v---fGT~d~~HPgV~~~~~ 201 (400)
++||+.|.+.+.++.+.. --.+-++|++|++..+......=..+-++ +.++ ..++|. | +|+
T Consensus 92 ~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~e-ilr~l~~lq~~~~-~-~~~---- 164 (215)
T PRK13599 92 PFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDE-ILRALKALQTADQ-Y-GVA---- 164 (215)
T ss_pred ceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHH-HHHHHHHhhhhhh-c-CCC----
Confidence 679999988888776653 13456789999999987543322333333 2222 233332 1 333
Q ss_pred hcCCEEEe---eeEEEeccCCCCCCCCcccCCHHHHHHHHHh---cCCCce
Q 015787 202 YAGNWLIG---GDLEVLEPIKYHDGLDRFRLSPAQLRDEFSK---RNADAV 246 (400)
Q Consensus 202 ~~g~~~vg---G~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~---~gw~~V 246 (400)
.--+|--+ |+=.++.++ .|..|.++.|.+ .|++++
T Consensus 165 ~p~~w~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 205 (215)
T PRK13599 165 LPEKWPNNYLIKDHVIVPPS----------TDEASANERKEKIKSKEIEAF 205 (215)
T ss_pred cCCCCCCCCCCCCcEEEcCC----------CCHHHHHHhccccccCCcccc
Confidence 23355331 444444432 267788888864 466654
No 116
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=26.49 E-value=76 Score=24.24 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.8
Q ss_pred cCCCCeEEEEcCCCcEEEEEE
Q 015787 149 IGESTRVALVDSDDNVVAILN 169 (400)
Q Consensus 149 l~~G~~vaL~d~eG~~vAiL~ 169 (400)
+++|+.|++.+.+|+.+|.-.
T Consensus 31 ~~~g~~V~v~~~~g~~vg~G~ 51 (77)
T smart00359 31 IKEGDVVVIVDEKGEPLGIGL 51 (77)
T ss_pred cCCCCEEEEEcCCCCEEEEEE
Confidence 678999999998899999865
No 117
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=25.59 E-value=5.6e+02 Score=25.01 Aligned_cols=104 Identities=12% Similarity=0.031 Sum_probs=65.8
Q ss_pred HHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCc-EEEEeCCCCCCCCChhHHHHHHHHHHhcCCc
Q 015787 269 RLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPET-TVVSIFPSPMHYAGPTEVQWHAKARINAGAN 347 (400)
Q Consensus 269 ~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~-~~l~~lp~~mryAGPREallHAiiRkNyGcT 347 (400)
.+++.| .+++++.=..|+- --+..+-|.+-.+.+.+ ....+. ++..+-. .+-+|++=.|...+..|++
T Consensus 30 ~l~~~G--v~gi~~~Gs~GE~--~~ls~~Er~~~~~~~~~--~~~~~~~vi~gv~~-----~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 30 YLIANG--TDGLVVVGTTGES--PTLTHEEHEELIRAVVE--AVNGRVPVIAGTGS-----NSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred HHHHcC--CCEEEECCcCCcc--ccCCHHHHHHHHHHHHH--HhCCCCcEEeecCC-----chHHHHHHHHHHHHHcCCC
Confidence 455655 5678875444433 34788999999999988 344332 3333322 2468999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeecc
Q 015787 348 FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKAS 397 (400)
Q Consensus 348 hfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc 397 (400)
.+++-. . .||.+ .-+++++.+..+ .+...++.+.|.
T Consensus 99 ~v~~~p-----P------~~~~~-~~~~i~~~~~~i--a~~~~~pv~lYn 134 (292)
T PRK03170 99 GALVVT-----P------YYNKP-TQEGLYQHFKAI--AEATDLPIILYN 134 (292)
T ss_pred EEEECC-----C------cCCCC-CHHHHHHHHHHH--HhcCCCCEEEEE
Confidence 999852 1 24443 346677766433 233455666664
No 118
>PRK04980 hypothetical protein; Provisional
Probab=23.84 E-value=84 Score=27.14 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=26.9
Q ss_pred HhcCCCCeEEE-EcCCCcEEEEEEeCccccCC
Q 015787 147 RRIGESTRVAL-VDSDDNVVAILNDIEIYKHP 177 (400)
Q Consensus 147 ~~l~~G~~vaL-~d~eG~~vAiL~V~eif~~d 177 (400)
...++||.+.+ ++.+|++++.+.|.++-...
T Consensus 30 ~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~ 61 (102)
T PRK04980 30 SHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVT 61 (102)
T ss_pred cCCCCCCEEEEEECCCCcEEEEEEEEEEEEEe
Confidence 46889999999 78899999999999988663
No 119
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.79 E-value=75 Score=29.41 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=23.9
Q ss_pred eEEEecCHHHHHhcCCCCeEEEEcCCCcEEEEE
Q 015787 136 PIVLAIDDEQKRRIGESTRVALVDSDDNVVAIL 168 (400)
Q Consensus 136 PI~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL 168 (400)
=.+++++++ |.+||++..+|++|+++|+=
T Consensus 102 KfVi~~D~~----iR~~dEvlVVne~d~LlAvG 130 (155)
T COG1370 102 KFVIDVDEE----IRAGDEVLVVNEDDELLAVG 130 (155)
T ss_pred hheeccCcc----cCCCCeEEEECCCCcEEEee
Confidence 457777765 78999999999999998864
No 120
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.58 E-value=6.4e+02 Score=25.20 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=68.3
Q ss_pred HHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCc-EEEEeCCCCCCCCChhHHHHHHHHHHhcCCc
Q 015787 269 RLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPET-TVVSIFPSPMHYAGPTEVQWHAKARINAGAN 347 (400)
Q Consensus 269 ~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~-~~l~~lp~~mryAGPREallHAiiRkNyGcT 347 (400)
..++.| .+++++.=..|+.- -+..+-|.+-.++..+ ....+. ++..+-. .+.+|++-.|...+..|+.
T Consensus 37 ~li~~G--v~Gi~v~GstGE~~--~Lt~eEr~~v~~~~~~--~~~grvpvi~Gv~~-----~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 37 RLIAAG--VDGILTMGTFGECA--TLTWEEKQAFVATVVE--TVAGRVPVFVGATT-----LNTRDTIARTRALLDLGAD 105 (309)
T ss_pred HHHHcC--CCEEEECcccccch--hCCHHHHHHHHHHHHH--HhCCCCCEEEEecc-----CCHHHHHHHHHHHHHhCCC
Confidence 345555 56888655555432 3778899999999888 333322 2333311 2679999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEE-EeeeeeccC
Q 015787 348 FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNIL-PFKVCKASD 398 (400)
Q Consensus 348 hfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~-p~~~~vYc~ 398 (400)
-++|-. .||-+..-+.+++.|..+ .+-. .++.++|+.
T Consensus 106 ~vlv~~------------P~y~~~~~~~l~~yf~~v--a~a~~~lPv~iYn~ 143 (309)
T cd00952 106 GTMLGR------------PMWLPLDVDTAVQFYRDV--AEAVPEMAIAIYAN 143 (309)
T ss_pred EEEECC------------CcCCCCCHHHHHHHHHHH--HHhCCCCcEEEEcC
Confidence 999854 234333447788877543 3345 377788864
No 121
>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life. ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.
Probab=23.53 E-value=1.4e+02 Score=25.16 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=33.3
Q ss_pred CCCeeecceeEEEecCHHHHHhcCCCCeEEEEcCCCcEEEEEEeCccccCC
Q 015787 127 DGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHP 177 (400)
Q Consensus 127 dG~~~pwpiPI~L~v~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~eif~~d 177 (400)
+|.- -++.....+.-..+++||.+.+.|.+ ++++++.|.++....
T Consensus 14 ~G~K-----tat~r~~~~~~~~~k~Gd~~i~~~~~-~~~~~i~v~~V~~~~ 58 (105)
T cd06541 14 SGRK-----TIEIRSLDIYEQLPKAGDYLIILDGQ-QPLAIAEVVKVEIMP 58 (105)
T ss_pred CCCC-----EEEEEcchhcccCCCCCCEEEEecCC-CcEEEEEEEEEEEEE
Confidence 5666 34554544444678999999999876 999999999886553
No 122
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=23.42 E-value=3.2e+02 Score=27.70 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhcCCCc---eEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEec-cc-----CCCC---CCCCChH
Q 015787 230 SPAQLRDEFSKRNADA---VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP-LG-----GYTK---ADDVPLS 297 (400)
Q Consensus 230 tP~e~R~~f~~~gw~~---VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~P-lv-----G~tK---~dDi~~~ 297 (400)
.+.|.-+.|++.|.+. |++.+-+||=-.-|++|. +. |..|.. .+ |..+ -+-.|++
T Consensus 168 ~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la--------~~-----G~~l~~D~~g~~~~g~~~~~~~~~~~d~ 234 (308)
T PF02126_consen 168 MGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELA--------DR-----GVYLEFDTIGREFSGKDKNPRVGYPPDE 234 (308)
T ss_dssp CHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHH--------HT-----T-EEEETTTT-B-TTTTTCHSCTTS-HH
T ss_pred CHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHH--------hc-----CCEEEecCCcccccCcccCccCCCCCHH
Confidence 5888889999999874 777777666655555542 43 355555 45 4433 3457788
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEE
Q 015787 298 WRMKQHEKVLEDGVLDPETTVVS 320 (400)
Q Consensus 298 ~R~r~ye~ll~~~y~p~~~~~l~ 320 (400)
.|++....|+++||. ++++|+
T Consensus 235 ~ri~~l~~L~~~Gy~--~qIlLS 255 (308)
T PF02126_consen 235 ERIELLKELIEEGYA--DQILLS 255 (308)
T ss_dssp HHHHHHHHHHHTTTG--GGEEE-
T ss_pred HHHHHHHHHHHcCCc--CcEEEe
Confidence 999999999999974 467764
No 123
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=22.85 E-value=1e+03 Score=27.98 Aligned_cols=200 Identities=17% Similarity=0.221 Sum_probs=111.4
Q ss_pred ecCHHHHHhcCCCCeEEEEcCC-CcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccC
Q 015787 140 AIDDEQKRRIGESTRVALVDSD-DNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPI 218 (400)
Q Consensus 140 ~v~~e~a~~l~~G~~vaL~d~e-G~~vAiL~V~eif~~dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~ 218 (400)
-|++.. +...|.|.|+|-. ..++=.|.---||.+++.+.|-.-|=| -|.++.|.+.
T Consensus 163 ~VPD~v---~d~AD~v~lVDi~P~~L~~RL~~GKVY~~~~a~~A~~nFF~--------------------~~NL~aLREl 219 (890)
T COG2205 163 TVPDRV---FDEADEVELVDIPPDDLRERLKEGKVYAPEQAERALENFFR--------------------KGNLTALREL 219 (890)
T ss_pred eCChhH---hcccCeEEEecCCHHHHHHHHHcCCccCHHHHHHHHHHhhc--------------------cccHHHHHHH
Confidence 345544 3467888888721 234444444556777666665554432 2233333322
Q ss_pred CCCCCCCcccCCHHHHH----HHHHhcC----C---CceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEecccC
Q 015787 219 KYHDGLDRFRLSPAQLR----DEFSKRN----A---DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG 287 (400)
Q Consensus 219 ~~~~~f~~~r~tP~e~R----~~f~~~g----w---~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~PlvG 287 (400)
-+|.+-..+- +.-..+| | .+|+.+-+-+|- -|.++|.|.+.|.... +.+....+.-
T Consensus 220 -------ALRr~AdrVd~~~~~~~~~~~~~~~~~~~e~ilvcI~~~~~---~e~liR~a~RlA~~~~---a~~~av~v~~ 286 (890)
T COG2205 220 -------ALRRTADRVDDQLRAYRRHKGIEGVWAARERILVCISGSPG---SEKLIRRAARLASRLH---AKWTAVYVET 286 (890)
T ss_pred -------HHHHHHHHHhHHHHHHhhcccccccccccceEEEEECCCCc---hHHHHHHHHHHHHHhC---CCeEEEEEec
Confidence 1233333333 2222332 2 346666666664 7889999988887764 3444333322
Q ss_pred CCCCCC-CChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCC
Q 015787 288 YTKADD-VPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRD 366 (400)
Q Consensus 288 ~tK~dD-i~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHAGvG~~~~~~~ 366 (400)
+....- -...-++.....+.+ -|-.+.+.|. |+..+--=+-.++++.+|++||||...--. +.
T Consensus 287 ~~~~~~~~~~~~~l~~~~~Lae--~lGae~~~l~---------~~dv~~~i~~ya~~~~~TkiViG~~~~~rw-----~~ 350 (890)
T COG2205 287 PELHRLSEKEARRLHENLRLAE--ELGAEIVTLY---------GGDVAKAIARYAREHNATKIVIGRSRRSRW-----RR 350 (890)
T ss_pred cccccccHHHHHHHHHHHHHHH--HhCCeEEEEe---------CCcHHHHHHHHHHHcCCeeEEeCCCcchHH-----HH
Confidence 222111 112233333333444 4666666664 665555445566999999999999876554 35
Q ss_pred CCCCchhhhHhhhCCCCCcceEEEee
Q 015787 367 LYDADHGKKVLSMAPGLERLNILPFK 392 (400)
Q Consensus 367 ~Yd~~~aq~i~~~~~~l~~i~I~p~~ 392 (400)
++...=+.++....+++ ++.|++..
T Consensus 351 ~~~~~l~~~L~~~~~~i-dv~ii~~~ 375 (890)
T COG2205 351 LFKGSLADRLAREAPGI-DVHIVALD 375 (890)
T ss_pred HhcccHHHHHHhcCCCc-eEEEeeCC
Confidence 66666777788777765 57777654
No 124
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=22.81 E-value=2.8e+02 Score=29.59 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=55.0
Q ss_pred HhcCCCceEEee--eCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEec----ccCCC-CCCCCChHHHHHHHHHHHHcCC
Q 015787 239 SKRNADAVFAFQ--LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP----LGGYT-KADDVPLSWRMKQHEKVLEDGV 311 (400)
Q Consensus 239 ~~~gw~~VvAfQ--tRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~P----lvG~t-K~dDi~~~~R~r~ye~ll~~~y 311 (400)
+++.-+.+..|- |-+++|.||..++++ |.+.| +-|+|=- .+-.. .+-=++.+.|++..+++ + +
T Consensus 47 ~~~~~~~~rV~~~G~FDllH~GH~~~L~q----Ak~lG---d~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~al-k--~ 116 (418)
T PLN02406 47 KKKKKKPVRVYMDGCFDMMHYGHANALRQ----ARALG---DELVVGVVSDEEIIANKGPPVTPMHERMIMVSGV-K--W 116 (418)
T ss_pred cccCCCceEEEEcCeeCCCCHHHHHHHHH----HHHhC---CEEEEEEecChhhhccCCCCcCCHHHHHHHHHhc-C--C
Confidence 333334455554 899999999999874 55665 4332211 11111 22447899999988873 3 3
Q ss_pred CCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 015787 312 LDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (400)
Q Consensus 312 ~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcThfIVGRDHA 356 (400)
. +.+++. -|+. +. +-.+-.++ +-++|..++.|-|..
T Consensus 117 V--D~Vv~~-apy~--~~---~d~~~~li-~~~~~D~vVhGdD~~ 152 (418)
T PLN02406 117 V--DEVIPD-APYA--IT---EEFMNKLF-NEYNIDYIIHGDDPC 152 (418)
T ss_pred C--ceEEeC-Cccc--cc---hHHHHHHH-HHhCCCEEEECCCcc
Confidence 3 333331 2221 11 22222222 358999999998854
No 125
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=22.67 E-value=48 Score=24.47 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=17.0
Q ss_pred HHHhcCCCCeEEEEcCCCcEEEE
Q 015787 145 QKRRIGESTRVALVDSDDNVVAI 167 (400)
Q Consensus 145 ~a~~l~~G~~vaL~d~eG~~vAi 167 (400)
.+.-|++|..|.+.--+|+++++
T Consensus 33 ~~~~l~eg~~v~v~~~~g~~i~~ 55 (55)
T cd04463 33 SFESFEPGEVVLVDTRTGQYVGV 55 (55)
T ss_pred HHhhCCCCCEEEEEEECCEEEeC
Confidence 35568999999876557887763
No 126
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=22.49 E-value=1.4e+02 Score=29.38 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=43.4
Q ss_pred ceEEeeeCCCCchhHHHHHHHHHHHHHHhc-CCCCcEEEecccCC-CCCCCCChHHHHHHHHHHH
Q 015787 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMG-YQNPILLLHPLGGY-TKADDVPLSWRMKQHEKVL 307 (400)
Q Consensus 245 ~VvAfQtRNPlHRaHe~l~r~~~~~ale~~-~~~~~Lll~PlvG~-tK~dDi~~~~R~r~ye~ll 307 (400)
.++|.+.-||+-..|-.|+.-|+...-|.+ +..=.=.+.|+.-. +|.+-+|+..|++.-|+.-
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt 74 (234)
T KOG3199|consen 10 VLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELAT 74 (234)
T ss_pred EEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhh
Confidence 367889999999999999986644332432 11112356787644 4779999999998777543
No 127
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.46 E-value=1e+03 Score=25.86 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=46.9
Q ss_pred HHHHHhcCCcCCCCCCCChhhhhcccccCCeecCCCCeeecceeEEEecCHHHH---Hhc--CCCCeEEEEcC---CCcE
Q 015787 93 WVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQK---RRI--GESTRVALVDS---DDNV 164 (400)
Q Consensus 93 dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~pwpiPI~L~v~~e~a---~~l--~~G~~vaL~d~---eG~~ 164 (400)
.+-|...|+|+.+..+|+.++....+. .=.++..|.. .-|.++..+.... +.+ ..-..+-++|. +|++
T Consensus 68 Aiala~~gG~g~Ih~n~sie~qa~lV~-kVk~~~~g~i---~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkL 143 (502)
T PRK07107 68 AIALAREGGLSFIFGSQSIESEAAMVR-RVKNYKAGFV---VSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKL 143 (502)
T ss_pred HHHHHHcCCCeEeeCCCCHHHHHHHHH-HHHHHhcCCc---CCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEE
Confidence 356888999998888899888766431 1112345543 2244665543221 111 12234555664 4899
Q ss_pred EEEEEeCccc
Q 015787 165 VAILNDIEIY 174 (400)
Q Consensus 165 vAiL~V~eif 174 (400)
+|+++..|+.
T Consensus 144 vGIVT~~DLr 153 (502)
T PRK07107 144 LGIVTSRDYR 153 (502)
T ss_pred EEEEEcHHhh
Confidence 9999988864
No 128
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=22.14 E-value=55 Score=25.20 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=16.1
Q ss_pred HhcCCCCeEEEEcCCCcEEEE
Q 015787 147 RRIGESTRVALVDSDDNVVAI 167 (400)
Q Consensus 147 ~~l~~G~~vaL~d~eG~~vAi 167 (400)
.=|++|..+.+.--+|+++++
T Consensus 38 ~~L~e~~~v~v~~~~~~~i~v 58 (61)
T cd04470 38 KFLKEGMEVIVLFYNGEPIGV 58 (61)
T ss_pred hhCcCCCEEEEEEECCEEEEE
Confidence 347899988876557998876
No 129
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=21.93 E-value=2.1e+02 Score=28.94 Aligned_cols=134 Identities=20% Similarity=0.173 Sum_probs=78.9
Q ss_pred HhcCCEEEeeeEEEeccCCCCCCCCcccCCHHHHHHHHH---hcCCCc------eEEee-eCCCCchhHHHHHHHHHHHH
Q 015787 201 TYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFS---KRNADA------VFAFQ-LRNPVHNGHALLMTDTRRRL 270 (400)
Q Consensus 201 ~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~---~~gw~~------VvAfQ-tRNPlHRaHe~l~r~~~~~a 270 (400)
.+.|=--|+|.=--.+ +.++ -.-..++..|+-+.|. +.|.+- +++.- +.||++-..+.+++.|.++.
T Consensus 75 ~~tGv~II~~TG~y~~-~~~p--~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~ 151 (308)
T PF02126_consen 75 RRTGVNIIASTGFYKE-PFYP--EWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAH 151 (308)
T ss_dssp HHHT-EEEEEEEE-SG-GCSC--HHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEeCCCCcc-ccCC--hhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHH
Confidence 4566556666433332 2222 1134567888877764 344442 55665 67999999999999888888
Q ss_pred HHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCcEEEEeCCCCCCCCChhHHHHHHHHHHhcCCcEEE
Q 015787 271 LEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYI 350 (400)
Q Consensus 271 le~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~~~l~~lp~~mryAGPREallHAiiRkNyGcThfI 350 (400)
.+.| ..+.+|+-.|... -+++.+.|.++| .++++++++=.. ..|---.+..++. .||+
T Consensus 152 ~~TG---~pI~~H~~~g~~~--------~~e~~~il~e~G-v~~~rvvigH~D-----~~~D~~y~~~la~--~G~~--- 209 (308)
T PF02126_consen 152 KETG---APISTHTGRGTRM--------GLEQLDILEEEG-VDPSRVVIGHMD-----RNPDLDYHRELAD--RGVY--- 209 (308)
T ss_dssp HHHT----EEEEEESTTGTC--------HHHHHHHHHHTT---GGGEEETSGG-----GST-HHHHHHHHH--TT-E---
T ss_pred HHhC---CeEEEcCCCCCcC--------HHHHHHHHHHcC-CChhHeEEeCCC-----CCCCHHHHHHHHh--cCCE---
Confidence 8887 7799999665211 245566677765 588999886433 1232223444544 4994
Q ss_pred ecCCCCCCC
Q 015787 351 VGRDPAGMG 359 (400)
Q Consensus 351 VGRDHAGvG 359 (400)
|+=|+.|..
T Consensus 210 l~~D~~g~~ 218 (308)
T PF02126_consen 210 LEFDTIGRE 218 (308)
T ss_dssp EEETTTT-B
T ss_pred EEecCCccc
Confidence 788888653
No 130
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.91 E-value=7.2e+02 Score=23.92 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=64.0
Q ss_pred HHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCc-EEEEeCCCCCCCCChhHHHHHHHHHHhcCCc
Q 015787 269 RLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPET-TVVSIFPSPMHYAGPTEVQWHAKARINAGAN 347 (400)
Q Consensus 269 ~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~-~~l~~lp~~mryAGPREallHAiiRkNyGcT 347 (400)
.+++.| .+++++.=..|+- --+..+-|.+-.+.+.+ ....+. ++..+-. ..-+|++-.|...+..|++
T Consensus 26 ~l~~~G--v~gi~~~GstGE~--~~ls~~Er~~l~~~~~~--~~~~~~~vi~gv~~-----~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 26 FLIEAG--VDGLVVLGTTGEA--PTLTDEERKEVIEAVVE--AVAGRVPVIAGVGA-----NSTREAIELARHAEEAGAD 94 (281)
T ss_pred HHHHcC--CCEEEECCCCccc--ccCCHHHHHHHHHHHHH--HhCCCCeEEEecCC-----ccHHHHHHHHHHHHHcCCC
Confidence 455655 4677655444422 34777889999998888 334332 3333322 2457899999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeecc
Q 015787 348 FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKAS 397 (400)
Q Consensus 348 hfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc 397 (400)
-+++-. .||-+..-+.+++.+..+ .+-..++.++|.
T Consensus 95 ~v~v~p------------P~y~~~~~~~~~~~~~~i--a~~~~~pi~iYn 130 (281)
T cd00408 95 GVLVVP------------PYYNKPSQEGIVAHFKAV--ADASDLPVILYN 130 (281)
T ss_pred EEEECC------------CcCCCCCHHHHHHHHHHH--HhcCCCCEEEEE
Confidence 999932 244444446677766433 222445666664
No 131
>PRK08395 fumarate hydratase; Provisional
Probab=21.88 E-value=90 Score=29.08 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=20.1
Q ss_pred eEEEecCHHHHHhcCCCCeEEEE
Q 015787 136 PIVLAIDDEQKRRIGESTRVALV 158 (400)
Q Consensus 136 PI~L~v~~e~a~~l~~G~~vaL~ 158 (400)
-+++++++|++++|+.||.|.|.
T Consensus 2 ~l~tPl~~e~i~~L~~GD~V~Ls 24 (162)
T PRK08395 2 KLKTPLSWEDVLKLKAGDVVYLS 24 (162)
T ss_pred eeeCCCCHHHHhhCCCCCEEEEE
Confidence 45677889999999999999996
No 132
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=21.79 E-value=85 Score=26.58 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=14.3
Q ss_pred HHHHhcCCCCcEEEecccCCC
Q 015787 269 RLLEMGYQNPILLLHPLGGYT 289 (400)
Q Consensus 269 ~ale~~~~~~~Lll~PlvG~t 289 (400)
.|+|.. .++.||||..|..
T Consensus 71 ~al~~~--G~G~LvHP~~G~~ 89 (93)
T PF07157_consen 71 AALEAP--GPGELVHPWFGSM 89 (93)
T ss_pred HHHcCC--CCeEEecCCCceE
Confidence 466652 4899999999954
No 133
>PRK09875 putative hydrolase; Provisional
Probab=21.65 E-value=4.9e+02 Score=26.12 Aligned_cols=73 Identities=7% Similarity=-0.003 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCC--Cc-eEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEec-ccCCCCCCCCChHHHHHHHHHH
Q 015787 231 PAQLRDEFSKRNA--DA-VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP-LGGYTKADDVPLSWRMKQHEKV 306 (400)
Q Consensus 231 P~e~R~~f~~~gw--~~-VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~Lll~P-lvG~tK~dDi~~~~R~r~ye~l 306 (400)
..|.-+.+++.|. ++ |++..-+|+=-.-|.+ +++. |..|-. .+|.. ...|.+.|+++...+
T Consensus 165 g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~--------l~~~-----G~~l~fD~~g~~--~~~pd~~r~~~i~~L 229 (292)
T PRK09875 165 GLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILK--------MIDL-----GAYVQFDTIGKN--SYYPDEKRIAMLHAL 229 (292)
T ss_pred hHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHH--------HHHc-----CCEEEeccCCCc--ccCCHHHHHHHHHHH
Confidence 3344568899999 44 5566666643222222 3454 355554 55643 346888999999999
Q ss_pred HHcCCCCCCcEEEE
Q 015787 307 LEDGVLDPETTVVS 320 (400)
Q Consensus 307 l~~~y~p~~~~~l~ 320 (400)
++.|| .++++|+
T Consensus 230 ~~~Gy--~drilLS 241 (292)
T PRK09875 230 RDRGL--LNRVMLS 241 (292)
T ss_pred HhcCC--CCeEEEe
Confidence 99886 4567774
No 134
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=21.43 E-value=3e+02 Score=26.81 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=65.0
Q ss_pred HHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCc-EEEEeCCCCCCCCChhHHHHHHHHHHhcCC
Q 015787 268 RRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPET-TVVSIFPSPMHYAGPTEVQWHAKARINAGA 346 (400)
Q Consensus 268 ~~ale~~~~~~~Lll~PlvG~tK~dDi~~~~R~r~ye~ll~~~y~p~~~-~~l~~lp~~mryAGPREallHAiiRkNyGc 346 (400)
+..++.| .+++++.=..|+. --+..+-|.+-++.+++ ..+.+. ++..+-.. .-+|++=+|...++.|+
T Consensus 29 ~~l~~~G--v~gl~~~GstGE~--~~Lt~~Er~~l~~~~~~--~~~~~~~vi~gv~~~-----st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 29 DFLIEAG--VDGLVVLGSTGEF--YSLTDEERKELLEIVVE--AAAGRVPVIAGVGAN-----STEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHTT--SSEEEESSTTTTG--GGS-HHHHHHHHHHHHH--HHTTSSEEEEEEESS-----SHHHHHHHHHHHHHTT-
T ss_pred HHHHHcC--CCEEEECCCCccc--ccCCHHHHHHHHHHHHH--HccCceEEEecCcch-----hHHHHHHHHHHHhhcCc
Confidence 4566766 5678765544432 23778889999999888 455543 44443222 57899999999999999
Q ss_pred cEEEecCCCCCCCCCCCCCCCCCCchhhhHhhhCCCCCcceEEEeeeeecc
Q 015787 347 NFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVCKAS 397 (400)
Q Consensus 347 ThfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~~l~~i~I~p~~~~vYc 397 (400)
.-++|.. .||....-+.+++.|..+ .+...++.++|.
T Consensus 98 d~v~v~~------------P~~~~~s~~~l~~y~~~i--a~~~~~pi~iYn 134 (289)
T PF00701_consen 98 DAVLVIP------------PYYFKPSQEELIDYFRAI--ADATDLPIIIYN 134 (289)
T ss_dssp SEEEEEE------------STSSSCCHHHHHHHHHHH--HHHSSSEEEEEE
T ss_pred eEEEEec------------cccccchhhHHHHHHHHH--HhhcCCCEEEEE
Confidence 9998853 244455556676655332 133334444454
No 135
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.20 E-value=15 Score=28.37 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=10.4
Q ss_pred CCCeeecceeEEE
Q 015787 127 DGSVVNMSVPIVL 139 (400)
Q Consensus 127 dG~~~pwpiPI~L 139 (400)
=|..||+|+|++|
T Consensus 38 IG~TWPmSfPv~l 50 (55)
T PF10753_consen 38 IGLTWPMSFPVAL 50 (55)
T ss_pred HHccCccccHHHH
Confidence 3888999998865
No 136
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=21.06 E-value=8.7e+02 Score=24.56 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=48.0
Q ss_pred eeeEEEeccCCCCCCCCcccCCHHHHHHHHHhcCCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCc--EEEeccc
Q 015787 209 GGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPI--LLLHPLG 286 (400)
Q Consensus 209 gG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~--Lll~Plv 286 (400)
.|.+-.++-|.|. ||+|+| .|+..|++ ||+.-| ..|-+ .|.|.|.+..+ ++-+.-.
T Consensus 158 ~GvYv~~~GPrfE--------T~AEir-~~r~~GaD-vVGMS~------vPEvi------lAre~Gl~~a~ls~VTN~a~ 215 (290)
T PRK07432 158 GGTYVCMEGPAFS--------TKAESN-LYRSWGAT-VIGMTN------LPEAK------LAREAEIAYATLALVTDYDC 215 (290)
T ss_pred CeEEEEeeCCCCC--------cHHHHH-HHHHcCCC-EeccCc------hHHHH------HHHhCCCcEEEEEEEeeccc
Confidence 5777777766663 999995 56778887 777754 56776 35677655443 3335555
Q ss_pred CCCCCCCCChHHHHHHHHHH
Q 015787 287 GYTKADDVPLSWRMKQHEKV 306 (400)
Q Consensus 287 G~tK~dDi~~~~R~r~ye~l 306 (400)
|......+.++-.+++.+.-
T Consensus 216 g~~~~~~~s~eeV~~~~~~~ 235 (290)
T PRK07432 216 WHPDHDSVTVEMVIGNLHKN 235 (290)
T ss_pred ccCcCCCCCHHHHHHHHHHH
Confidence 54333446777666665543
No 137
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=20.99 E-value=8.2e+02 Score=24.24 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=46.8
Q ss_pred EeeeEEEeccCCCCCCCCcccCCHHHHHHHHHhc-CCCceEEeeeCCCCchhHHHHHHHHHHHHHHhcCCCCc--EEEec
Q 015787 208 IGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKR-NADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPI--LLLHP 284 (400)
Q Consensus 208 vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~-gw~~VvAfQtRNPlHRaHe~l~r~~~~~ale~~~~~~~--Lll~P 284 (400)
-.|.+-.++=|.|. ||+|+|. |+.. |++ +||.-| ..|.+. |.|.|.+..+ ++-+.
T Consensus 158 ~~GvY~~~~GP~fE--------T~AEir~-~r~~~GaD-~VGMS~------vpEvil------Are~g~~~~~is~VtN~ 215 (267)
T PRK08564 158 EKGTYICIEGPRFS--------TRAESRM-WREVFKAD-IIGMTL------VPEVNL------ACELGMCYATIAMVTDY 215 (267)
T ss_pred cceEEEEeeCCCcC--------CHHHHHH-HHHccCCC-EeccCc------cHHHHH------HHHcCCceEEEEEEecc
Confidence 35777777766653 9999964 5565 886 888764 577773 5676655443 33455
Q ss_pred ccCCCCCCCCChHHHHHHHHHH
Q 015787 285 LGGYTKADDVPLSWRMKQHEKV 306 (400)
Q Consensus 285 lvG~tK~dDi~~~~R~r~ye~l 306 (400)
-.| ....+.++-.++.++..
T Consensus 216 a~g--~~~~~t~~ev~~~~~~~ 235 (267)
T PRK08564 216 DVW--AEKPVTAEEVTRVMAEN 235 (267)
T ss_pred ccC--CCCCCCHHHHHHHHHHH
Confidence 555 34556776666655543
No 138
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=20.68 E-value=3.4e+02 Score=24.18 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=31.8
Q ss_pred ceeEEEecCHHHHHhcCCC--------CeEEEEcCCCcEEEEEEeCccccCCHH
Q 015787 134 SVPIVLAIDDEQKRRIGES--------TRVALVDSDDNVVAILNDIEIYKHPKE 179 (400)
Q Consensus 134 piPI~L~v~~e~a~~l~~G--------~~vaL~d~eG~~vAiL~V~eif~~dk~ 179 (400)
++|++.|.+.+.++.+..- -...|+|++|+++....-..-...+.+
T Consensus 94 ~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~ 147 (173)
T cd03015 94 NFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVD 147 (173)
T ss_pred ceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHH
Confidence 5599999888888876532 257889999999988853333334433
No 139
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=20.21 E-value=1.2e+02 Score=30.66 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=29.3
Q ss_pred CCCCCCCChhHHHHH-HHHHHhcCCcEEEecCCCCCCCCC
Q 015787 323 PSPMHYAGPTEVQWH-AKARINAGANFYIVGRDPAGMGHP 361 (400)
Q Consensus 323 p~~mryAGPREallH-AiiRkNyGcThfIVGRDHAGvG~~ 361 (400)
++-++|.||.-|--. ++.. +-==|-+|+|.||-|.|++
T Consensus 53 HAGy~ySG~taa~~y~~l~~-~~~~~vVIlGPnHtg~g~~ 91 (279)
T COG1355 53 HAGYRYSGPTAAHVYSALDE-GEPDTVVILGPNHTGLGSP 91 (279)
T ss_pred CCCcEecchhHHHHHHHhhc-CCCCEEEEECCCCCCCCCc
Confidence 578999999987555 4444 4445788999999999965
Done!