Query 015789
Match_columns 400
No_of_seqs 124 out of 150
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 93.1 0.025 8.6E-07 44.1 1.0 62 258-326 5-67 (70)
2 2kz3_A Putative uncharacterize 92.3 0.1 3.4E-06 42.2 3.6 40 275-319 17-56 (83)
3 2i1q_A DNA repair and recombin 81.2 0.4 1.4E-05 45.1 0.9 59 260-325 3-61 (322)
4 3lda_A DNA repair protein RAD5 80.3 0.99 3.4E-05 45.1 3.4 62 260-326 81-142 (400)
5 3mab_A Uncharacterized protein 77.5 0.71 2.4E-05 37.9 1.1 77 264-379 8-84 (93)
6 2z43_A DNA repair and recombin 77.0 0.51 1.8E-05 44.9 0.2 57 261-324 13-69 (324)
7 1b22_A DNA repair protein RAD5 72.2 0.77 2.6E-05 38.9 0.0 62 261-327 24-85 (114)
8 1v5w_A DMC1, meiotic recombina 71.4 0.9 3.1E-05 43.8 0.3 59 261-324 26-84 (343)
9 1pzn_A RAD51, DNA repair and r 70.4 3.1 0.00011 40.3 3.9 59 261-326 36-94 (349)
10 4dez_A POL IV 1, DNA polymeras 58.7 2 6.9E-05 41.6 0.0 40 262-306 180-219 (356)
11 3pzp_A DNA polymerase kappa; D 52.4 7.8 0.00027 40.0 3.1 51 262-322 340-390 (517)
12 3osn_A DNA polymerase IOTA; ho 50.0 3.8 0.00013 41.1 0.3 51 262-321 236-286 (420)
13 3im1_A Protein SNU246, PRE-mRN 49.3 9.9 0.00034 36.4 3.1 54 261-321 158-211 (328)
14 2aq4_A DNA repair protein REV1 46.8 6.8 0.00023 39.2 1.6 52 262-321 243-296 (434)
15 1t94_A Polymerase (DNA directe 45.1 11 0.00038 37.9 2.8 50 262-321 284-333 (459)
16 2q0z_X Protein Pro2281; SEC63, 40.5 23 0.00078 34.1 4.2 55 261-322 162-216 (339)
17 4f4y_A POL IV, DNA polymerase 39.5 4.6 0.00016 39.5 -0.9 49 264-321 183-231 (362)
18 1z3e_B DNA-directed RNA polyme 39.3 17 0.00057 28.4 2.5 36 276-316 22-57 (73)
19 3k4g_A DNA-directed RNA polyme 36.9 23 0.00078 28.7 3.0 38 276-318 25-62 (86)
20 1jx4_A DNA polymerase IV (fami 36.1 4 0.00014 39.4 -1.9 53 262-323 180-232 (352)
21 3gqc_A DNA repair protein REV1 35.2 6.2 0.00021 40.9 -0.8 40 262-306 317-356 (504)
22 3bq0_A POL IV, DBH, DNA polyme 32.9 5 0.00017 38.8 -1.9 54 262-324 181-234 (354)
23 1tqz_A Necap1; endocytosis, st 27.1 23 0.00078 31.0 1.5 37 105-141 37-73 (133)
24 3bqs_A Uncharacterized protein 26.4 18 0.00062 29.4 0.7 77 264-379 8-84 (93)
25 1u9l_A Transcription elongatio 25.9 30 0.001 26.7 1.9 50 271-325 15-64 (70)
26 3gfk_B DNA-directed RNA polyme 25.3 19 0.00065 28.7 0.6 36 276-316 29-64 (79)
27 2va8_A SSO2462, SKI2-type heli 24.0 41 0.0014 34.9 3.0 48 264-321 661-708 (715)
28 1coo_A RNA polymerase alpha su 22.2 40 0.0014 27.9 2.0 25 276-303 37-61 (98)
29 3euh_C MUKE, chromosome partit 20.2 1E+02 0.0034 29.3 4.5 74 276-349 107-186 (234)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=93.09 E-value=0.025 Score=44.09 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=51.1
Q ss_pred CCccceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcc-ccCC
Q 015789 258 LNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT-CVLS 326 (400)
Q Consensus 258 L~DeVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAkt-Cvl~ 326 (400)
+.|++-.|++|+..-+ ++|.++||+||+|+..+ +++.|-.|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 4577788887776544 89999999999998765 788898887 7899999999999998 6553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=92.32 E-value=0.1 Score=42.21 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=31.4
Q ss_pred hhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHH
Q 015789 275 HKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDH 319 (400)
Q Consensus 275 hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~H 319 (400)
-++|.++||.||+||+.+ |+.+|.+++ |+|-+.=-.+..|
T Consensus 17 ~~~L~~~~I~Tv~Dfl~~---d~~eL~~~~--~ls~~~v~~l~r~ 56 (83)
T 2kz3_A 17 IQLLRSHRIKTVVDLVSA---DLEEVAQKC--GLSYKALVALRRV 56 (83)
T ss_dssp HHHHHHTTCCCHHHHTTS---CHHHHHHHH--TCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHH
Confidence 478999999999999865 999999999 5676655444443
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.21 E-value=0.4 Score=45.12 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=44.0
Q ss_pred ccceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccC
Q 015789 260 DDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVL 325 (400)
Q Consensus 260 DeVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl 325 (400)
+++..|++|+. .+-++|.++||+||+||+.+ ++..|-++. |+|.+.=+.+++.|+.+..
T Consensus 3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~~---~~~~L~~~~--gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIATA---TVGELTDIE--GISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp --CTTSTTCCH--HHHHHHHHHTCCSHHHHHTC---CHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence 45667775554 46689999999999999865 677777776 6788887788888877643
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.34 E-value=0.99 Score=45.13 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=50.4
Q ss_pred ccceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccCC
Q 015789 260 DDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLS 326 (400)
Q Consensus 260 DeVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~ 326 (400)
.++-+|+..|-.-..-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|.+++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~---~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYA---PRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 467888886655556689999999999999865 888999987 68998888888888876653
No 5
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=77.52 E-value=0.71 Score=37.93 Aligned_cols=77 Identities=26% Similarity=0.413 Sum_probs=53.8
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccCCCceEEEeeCCCCcEEEE
Q 015789 264 RLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVV 343 (400)
Q Consensus 264 RLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~k~~~y~~~~~~~v~l~ 343 (400)
.|-+||+.- -+.|.+.||.||+||..+ | +.+.|..+.++- . + +-
T Consensus 8 dLPNig~~~--e~~L~~~GI~t~~~Lr~~------------G---a~~ay~rLk~~~-------------~----~--~~ 51 (93)
T 3mab_A 8 ELPNIGKVL--EQDLIKAGIKTPVELKDV------------G---SKEAFLRIWEND-------------S----S--VC 51 (93)
T ss_dssp GSTTCCHHH--HHHHHHTTCCSHHHHHHH------------C---HHHHHHHHHHHC-------------T----T--CC
T ss_pred hCCCCCHHH--HHHHHHcCCCCHHHHHhC------------C---HHHHHHHHHHhC-------------C----C--CC
Confidence 344455533 367999999999998765 2 355666664431 0 1 12
Q ss_pred EcccceeeeeecCCeeccCCCCChhhHHHHHHHHHH
Q 015789 344 FNNIYELNGLISGEQYFPADALPESQKVGLIYIFVS 379 (400)
Q Consensus 344 FN~i~~lVG~~~~g~y~~~d~L~~~qk~~v~~lk~~ 379 (400)
+|..|.|+||+-| +....|++.+|....++..+
T Consensus 52 ~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3mab_A 52 MSELYALEGAVQG---IRWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp HHHHHHHHHHHHT---SCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcHHHCCHHHHHHHHHHHHH
Confidence 6788999999987 67788999999998888654
No 6
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=77.03 E-value=0.51 Score=44.88 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccc
Q 015789 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV 324 (400)
Q Consensus 261 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCv 324 (400)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|-++. |+|...=+.+++.|..+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 67888877654 4489999999999999865 556677766 567776677777776654
No 7
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=72.20 E-value=0.77 Score=38.92 Aligned_cols=62 Identities=29% Similarity=0.380 Sum_probs=50.3
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccCCC
Q 015789 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSG 327 (400)
Q Consensus 261 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~ 327 (400)
+|.+|+..|-.-+.-++|.++|++||++. ...++..|.++- |+|...=+.+++=|+.++..+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g 85 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG 85 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence 68899965544566799999999999976 455888899986 689999999999999887544
No 8
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=71.44 E-value=0.9 Score=43.77 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=0.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccc
Q 015789 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV 324 (400)
Q Consensus 261 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCv 324 (400)
++++|+.-|-.=..-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|..+.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--~is~~~~~~~~~~a~~~~ 84 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMT---TRRALCNVK--GLSEAKVDKIKEAANKLI 84 (343)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 68889854444455689999999999999865 566666665 456666666666666554
No 9
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.45 E-value=3.1 Score=40.27 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=46.1
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccCC
Q 015789 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLS 326 (400)
Q Consensus 261 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~ 326 (400)
++.+|.+|+. ...++|.++||+||++++.. ++..|-++. |+|...=+.+++.|.++...
T Consensus 36 ~l~~l~Gi~~--~~~~kL~~ag~~t~~~~~~~---~~~~L~~~~--~~s~~~~~~~l~~~~~~~~~ 94 (349)
T 1pzn_A 36 SIEDLPGVGP--ATAEKLREAGYDTLEAIAVA---SPIELKEVA--GISEGTALKIIQAARKAANL 94 (349)
T ss_dssp CSSCCTTCCH--HHHHHHHTTTCCSHHHHHTC---CHHHHHHHH--CCCHHHHHHHHHHHHHHCST
T ss_pred cHHHcCCCCH--HHHHHHHHcCCCcHHHHHhC---CHHHHHhhc--CCCHHHHHHHHHHHhhhccc
Confidence 4666664543 57799999999999999765 788899987 57877778888888876643
No 10
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=58.72 E-value=2 Score=41.59 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=30.8
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcC
Q 015789 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGS 306 (400)
Q Consensus 262 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~ 306 (400)
|-.|-+||+. .-++|...||+|++|+.+ .++..|++.||.
T Consensus 180 v~~l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~ 219 (356)
T 4dez_A 180 PDALWGVGPK--TTKKLAAMGITTVADLAV---TDPSVLTTAFGP 219 (356)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCSHHHHHT---SCHHHHHHHHCH
T ss_pred HHHHcCCchh--HHHHHHHcCCCeeccccc---CCHHHHHHHhCC
Confidence 3344467664 448899999999999864 489999999974
No 11
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=52.37 E-value=7.8 Score=40.05 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=38.1
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcc
Q 015789 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT 322 (400)
Q Consensus 262 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAkt 322 (400)
|-+|-+||+.+ -++|...||.|++|+..+ +..|+..|| ...|....++|.-
T Consensus 340 V~kl~GIG~~t--~~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 340 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp GGGSTTCCHHH--HHHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred hhhhccccHHH--HHHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 44555777654 488999999999999986 457888874 4678877777653
No 12
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=49.99 E-value=3.8 Score=41.14 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=36.9
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 015789 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (400)
Q Consensus 262 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 321 (400)
|-+|-+||+ ..-++|...||.|++|+.++ +++.|++.||. +....+.+||.
T Consensus 236 v~~l~GIG~--~t~~~L~~lGI~TigdLa~~---~~~~L~~~fG~----~~g~~L~~~a~ 286 (420)
T 3osn_A 236 IKEIPGIGY--KTAKCLEALGINSVRDLQTF---SPKILEKELGI----SVAQRIQKLSF 286 (420)
T ss_dssp GGGSTTCCH--HHHHHHHHTTCCSHHHHHHS---CHHHHHHHHHH----HHHHHHHHHHT
T ss_pred HHHccCCCH--HHHHHHHHhCCCcHHHHhhC---CHHHHHHHhCc----hHHHHHHHHhc
Confidence 333335554 45689999999999998765 88999999973 34555667775
No 13
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=49.28 E-value=9.9 Score=36.41 Aligned_cols=54 Identities=9% Similarity=0.201 Sum_probs=42.7
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 015789 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (400)
Q Consensus 261 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 321 (400)
+..-|.+|+.+-+ ++|.++||.|++||..+ +++++.++| +++++.-+.+.+-|.
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~~---~~~e~~~ll--~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMAL---EDEERDEIL--TLTDSQLAQVAAFVN 211 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHHS---CHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhcC---CHHHHHhHh--CCCHHHHHHHHHHHH
Confidence 4566777877544 67899999999999765 899999998 688888888777664
No 14
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=46.83 E-value=6.8 Score=39.22 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=36.8
Q ss_pred ceeeeeeccCchhhhhhhh--cCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 015789 262 VWRLEKIGKDGSFHKRLNN--AGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (400)
Q Consensus 262 VwRLekIgKdG~~hk~L~~--~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 321 (400)
|-.|-+||+ ..-++|.. .||.|++|+.+++ +++.|++.||.. ....+..||+
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~~----~g~~l~~~a~ 296 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGSK----LGMKIHLALQ 296 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCSS----HHHHHHHHTT
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCHH----HHHHHHHHhc
Confidence 444445554 45688999 8999999999874 889999999742 3334445554
No 15
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=45.09 E-value=11 Score=37.92 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=37.2
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 015789 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (400)
Q Consensus 262 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 321 (400)
|-+|-+||+. ..++|...||+|++|+..+ +..|++.|| .+.|.....+|+
T Consensus 284 v~~l~GiG~~--~~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~ 333 (459)
T 1t94_A 284 IRKVSGIGKV--TEKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL 333 (459)
T ss_dssp GGGCTTSCHH--HHHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred HHhcCCcCHH--HHHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence 5666677765 4488999999999999874 356999885 345666667776
No 16
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=40.46 E-value=23 Score=34.08 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=42.6
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcc
Q 015789 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT 322 (400)
Q Consensus 261 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAkt 322 (400)
+..-|.+|+.+ .-++|.++||.|++||.. .+++++.++|| +++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll~--l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALLQ--LTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHC--CCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHHC--CCHHHHHHHHHHHHh
Confidence 46677788765 347899999999999875 68999999994 888777777765543
No 17
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=39.46 E-value=4.6 Score=39.53 Aligned_cols=49 Identities=31% Similarity=0.430 Sum_probs=35.1
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 015789 264 RLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (400)
Q Consensus 264 RLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 321 (400)
.|-+||+. .-++|...||.|++|+.+ .+++.|++.||. +....+..+|+
T Consensus 183 ~l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~ 231 (362)
T 4f4y_A 183 EIPGIGSV--LARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQ 231 (362)
T ss_dssp TSTTCCST--THHHHHHTTCCBGGGGTT---SCHHHHHHHHCH----HHHHHHHHHHT
T ss_pred hccCCCHH--HHHHHHHcCCChHHHHhc---CCHHHHHHHhCh----HHHHHHHHHhc
Confidence 33356664 458999999999999765 588999999973 34455555554
No 18
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=39.30 E-value=17 Score=28.44 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=24.0
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHH
Q 015789 276 KRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEAL 316 (400)
Q Consensus 276 k~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~ 316 (400)
.-|..+||+||+|+++. .++.|.++= |+-.|.-+.+
T Consensus 22 NcLkragI~Tv~dL~~~---s~~dLlki~--n~G~kSl~EI 57 (73)
T 1z3e_B 22 NCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEV 57 (73)
T ss_dssp HHHHHTTCCBHHHHHTS---CHHHHHTST--TCCHHHHHHH
T ss_pred HHHHHcCCCcHHHHHcC---CHHHHHHcC--CCCHHHHHHH
Confidence 35889999999998875 566666663 3344444433
No 19
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=36.91 E-value=23 Score=28.70 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=25.9
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHH
Q 015789 276 KRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLD 318 (400)
Q Consensus 276 k~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~ 318 (400)
.-|..+||+||+|++.. +++.|.++= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 35899999999998876 555566652 345555555544
No 20
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=36.14 E-value=4 Score=39.41 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=38.7
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccc
Q 015789 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTC 323 (400)
Q Consensus 262 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktC 323 (400)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||.--
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~ 232 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDE 232 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCC
Confidence 555556665 4568999999999999875 588999999964 2255566777643
No 21
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=35.15 E-value=6.2 Score=40.87 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=30.8
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcC
Q 015789 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGS 306 (400)
Q Consensus 262 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~ 306 (400)
|..|-+||+ ..-++|...||.|++|+.+ .++..|++.||.
T Consensus 317 V~~l~GIG~--~t~~kL~~lGI~TigDLa~---~~~~~L~~~fG~ 356 (504)
T 3gqc_A 317 VTNLPGVGH--SMESKLASLGIKTCGDLQY---MTMAKLQKEFGP 356 (504)
T ss_dssp GGGSTTCCH--HHHHHHHHTTCCBHHHHTT---SCHHHHHHHHCH
T ss_pred hhHhhCcCH--HHHHHHHHcCCCcHHHHHh---ccHHHHHHhhCh
Confidence 444445555 4558999999999999875 588999999974
No 22
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=32.90 E-value=5 Score=38.79 Aligned_cols=54 Identities=28% Similarity=0.368 Sum_probs=39.0
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccc
Q 015789 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV 324 (400)
Q Consensus 262 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCv 324 (400)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 234 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKY 234 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCC
Confidence 444445564 4668999999999999875 588999999964 22566777776433
No 23
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=27.12 E-value=23 Score=31.04 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=29.0
Q ss_pred CCCCCccccCceeccCCCceEEEEEeCCCCceeccCC
Q 015789 105 RLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGP 141 (400)
Q Consensus 105 ~l~~pifTg~kI~a~~g~~I~V~L~D~~t~~~V~~Gp 141 (400)
.+..|+|||.--.-+.|....|.|.|.+||+.-..-|
T Consensus 37 ~~~~~~wtGrlrv~~~g~~~~I~LeD~~tGeLFA~cP 73 (133)
T 1tqz_A 37 KLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAP 73 (133)
T ss_dssp CCSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEE
T ss_pred CCCCceeEEEEEEEEeCCEEEEEEEeCCCCcEEEeCc
Confidence 3577899998766778889999999999987654433
No 24
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=26.37 E-value=18 Score=29.42 Aligned_cols=77 Identities=25% Similarity=0.416 Sum_probs=51.7
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccCCCceEEEeeCCCCcEEEE
Q 015789 264 RLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVV 343 (400)
Q Consensus 264 RLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~k~~~y~~~~~~~v~l~ 343 (400)
.|-+||+. .-+.|.+.||+||+||..+ + +..+|..+.+. + . .+ -
T Consensus 8 ~LPNiG~~--~e~~L~~vGI~s~e~L~~~---G------------a~~ay~rL~~~------~-------~----~~--c 51 (93)
T 3bqs_A 8 ELPNIGKV--LEQDLIKAGIKTPVELKDV---G------------SKEAFLRIWEN------D-------S----SV--C 51 (93)
T ss_dssp GSTTCCHH--HHHHHHHTTCCSHHHHHHH---H------------HHHHHHHHHTT------C-------T----TC--C
T ss_pred cCCCCCHH--HHHHHHHcCCCCHHHHHhC---C------------HHHHHHHHHHH------C-------C----CC--C
Confidence 34455553 3367999999999998766 2 24455555433 1 1 11 2
Q ss_pred EcccceeeeeecCCeeccCCCCChhhHHHHHHHHHH
Q 015789 344 FNNIYELNGLISGEQYFPADALPESQKVGLIYIFVS 379 (400)
Q Consensus 344 FN~i~~lVG~~~~g~y~~~d~L~~~qk~~v~~lk~~ 379 (400)
+|.+|.|.||.-| ++...|++..|....++...
T Consensus 52 ~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3bqs_A 52 MSELYALEGAVQG---IRWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp HHHHHHHHHHHHT---SCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCHHHCCHHHHHHHHHHHHH
Confidence 3778889999877 77788999999988776553
No 25
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=25.88 E-value=30 Score=26.66 Aligned_cols=50 Identities=26% Similarity=0.354 Sum_probs=39.7
Q ss_pred CchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccC
Q 015789 271 DGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVL 325 (400)
Q Consensus 271 dG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl 325 (400)
+-..-++|..+|++||++. .+.+++.|-+|- |+|...=+.+.+-|+..+.
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALA 64 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHH
Confidence 4456689999999999965 455777777775 7899999999999887654
No 26
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=25.34 E-value=19 Score=28.70 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHH
Q 015789 276 KRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEAL 316 (400)
Q Consensus 276 k~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~ 316 (400)
.-|..+||+||+|++.. +++.|.++= |+-.|.-+.+
T Consensus 29 NcLk~agI~Tv~dL~~~---se~dLlki~--n~G~kSl~EI 64 (79)
T 3gfk_B 29 NCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEV 64 (79)
T ss_dssp HHHHHTTCCBHHHHTTC---CHHHHTTST--TCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHhC---CHHHHHHcC--CCCHhHHHHH
Confidence 45899999999998765 555555552 2334444443
No 27
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=24.01 E-value=41 Score=34.90 Aligned_cols=48 Identities=27% Similarity=0.541 Sum_probs=36.3
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 015789 264 RLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (400)
Q Consensus 264 RLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 321 (400)
+|.+|+.. ..++|.++||.|++|+. .|+++|.+++| .+.-+.+++-|+
T Consensus 661 qlp~i~~~--rar~L~~~g~~s~~~l~----~~~~~l~~~l~----~~~~~~i~~~~~ 708 (715)
T 2va8_A 661 QISGVGRK--RARLLYNNGIKELGDVV----MNPDKVKNLLG----QKLGEKVVQEAA 708 (715)
T ss_dssp TSTTCCHH--HHHHHHHTTCCSHHHHH----HCHHHHHHHHC----HHHHHHHHHHHH
T ss_pred hCCCCCHH--HHHHHHHcCCCCHHHHh----CCHHHHHHHhC----hhHHHHHHHHHH
Confidence 44455443 44678999999999976 48999999995 777787777554
No 28
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=22.19 E-value=40 Score=27.91 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=18.0
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHH
Q 015789 276 KRLNNAGIFSVEDFLRLVVRDPQKLRSI 303 (400)
Q Consensus 276 k~L~~~~I~tV~dFL~l~~~d~~kLR~i 303 (400)
.-|..+||+||+|+++. .++.|-++
T Consensus 37 NcLkragI~Tv~dL~~~---se~dLlki 61 (98)
T 1coo_A 37 NCLKAEAIHYIGDLVQR---TEVELLKT 61 (98)
T ss_dssp HHHHTTTCCBHHHHHTS---CHHHHTTS
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHHhc
Confidence 45899999999998875 44444444
No 29
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=20.18 E-value=1e+02 Score=29.30 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=50.2
Q ss_pred hhhhhcCCccHHHHHHHhh--cChHHHHHHHcC--CCChhhHHHHHHHhccccC--CCceEEEeeCCCCcEEEEEcccce
Q 015789 276 KRLNNAGIFSVEDFLRLVV--RDPQKLRSILGS--GMSNKMWEALLDHAKTCVL--SGKLYVYYPEDSRNVGVVFNNIYE 349 (400)
Q Consensus 276 k~L~~~~I~tV~dFL~l~~--~d~~kLR~iLg~--gms~k~We~~v~HAktCvl--~~k~~~y~~~~~~~v~l~FN~i~~ 349 (400)
++|++.||.|+++...-+. .|+++|.++++. +=|+.+-+++-+-.++|-- ..--.++...+..+..-+=.+||-
T Consensus 107 erLa~~gift~qeL~eeL~sl~dE~kLlkl~~~R~~GSDlD~~kl~ekv~~sLrrL~RlgmI~~~~~d~~kf~iteavfR 186 (234)
T 3euh_C 107 ERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLRRLGMVWFMGHDSSKFRITESVFR 186 (234)
T ss_dssp GGGGGTTEEEHHHHHHHHHHHSCHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHTTSEEECSSSSSEEEECGGGGG
T ss_pred HHHhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHhcCcEEEecCCCCeEEecHHHHh
Confidence 6799999999999887663 489999999952 2377888888888888852 222345543322344444555554
Done!