Query 015791
Match_columns 400
No_of_seqs 273 out of 1894
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 2.6E-54 5.6E-59 412.6 27.8 268 132-399 4-271 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 2.4E-51 5.2E-56 403.3 33.4 295 101-399 2-297 (308)
3 PRK12895 ubiA prenyltransferas 100.0 1.3E-35 2.7E-40 288.5 28.8 259 111-391 2-263 (286)
4 PRK13106 ubiA prenyltransferas 100.0 2E-35 4.4E-40 289.1 29.2 269 98-390 2-277 (300)
5 TIGR01475 ubiA_other putative 100.0 1.3E-34 2.7E-39 282.0 30.4 263 111-394 1-266 (282)
6 PRK12874 ubiA prenyltransferas 100.0 6.8E-34 1.5E-38 277.7 31.3 270 106-396 2-276 (291)
7 PRK12870 ubiA 4-hydroxybenzoat 100.0 3E-34 6.5E-39 280.3 27.0 261 108-392 5-272 (290)
8 PRK12882 ubiA prenyltransferas 100.0 5.9E-34 1.3E-38 276.5 28.9 260 111-392 3-263 (276)
9 TIGR01476 chlor_syn_BchG bacte 100.0 6.8E-34 1.5E-38 277.0 27.8 221 113-346 1-223 (283)
10 PLN02809 4-hydroxybenzoate non 100.0 1.5E-33 3.3E-38 274.9 29.9 262 109-391 3-269 (289)
11 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.4E-33 3E-38 274.4 29.3 255 111-389 2-257 (279)
12 PRK07566 bacteriochlorophyll/c 100.0 1.8E-33 3.8E-38 277.8 29.7 226 108-344 23-249 (314)
13 PLN00012 chlorophyll synthetas 100.0 8.7E-33 1.9E-37 277.5 35.0 272 108-398 81-362 (375)
14 PRK12888 ubiA prenyltransferas 100.0 1.4E-33 3E-38 274.7 28.1 258 112-390 2-263 (284)
15 PRK12884 ubiA prenyltransferas 100.0 2.7E-33 5.8E-38 272.1 29.8 256 110-389 2-258 (279)
16 PRK12886 ubiA prenyltransferas 100.0 4.3E-33 9.4E-38 272.2 31.1 262 108-392 4-268 (291)
17 PRK12847 ubiA 4-hydroxybenzoat 100.0 6.3E-33 1.4E-37 270.5 29.6 262 108-392 3-269 (285)
18 PRK12848 ubiA 4-hydroxybenzoat 100.0 5.2E-33 1.1E-37 270.7 28.8 259 109-391 2-265 (282)
19 COG0382 UbiA 4-hydroxybenzoate 100.0 2.1E-32 4.6E-37 267.3 31.0 266 108-396 6-276 (289)
20 PRK12876 ubiA prenyltransferas 100.0 1.9E-32 4.1E-37 266.7 29.6 264 110-392 2-280 (300)
21 PRK05951 ubiA prenyltransferas 100.0 3.7E-32 7.9E-37 266.4 30.9 268 110-392 2-278 (296)
22 PRK12392 bacteriochlorophyll c 100.0 3.3E-32 7.3E-37 269.7 30.3 256 108-378 8-271 (331)
23 PRK12878 ubiA 4-hydroxybenzoat 100.0 8.3E-32 1.8E-36 265.6 31.4 267 104-392 22-296 (314)
24 TIGR02056 ChlG chlorophyll syn 100.0 5.4E-32 1.2E-36 266.4 29.9 225 107-346 11-245 (306)
25 PRK12873 ubiA prenyltransferas 100.0 6.2E-32 1.3E-36 263.1 27.8 261 110-392 5-276 (294)
26 TIGR01474 ubiA_proteo 4-hydrox 100.0 2.1E-31 4.5E-36 259.3 30.2 258 113-392 2-264 (281)
27 PRK12869 ubiA protoheme IX far 100.0 8.5E-31 1.8E-35 254.8 29.8 265 111-397 1-270 (279)
28 PRK12883 ubiA prenyltransferas 100.0 5.8E-31 1.3E-35 255.6 28.3 205 111-336 2-206 (277)
29 PRK06080 1,4-dihydroxy-2-napht 100.0 1.4E-30 3.1E-35 254.7 29.9 232 111-357 2-241 (293)
30 PRK04375 protoheme IX farnesyl 100.0 1.7E-30 3.8E-35 254.6 29.7 268 108-396 6-278 (296)
31 PRK13595 ubiA prenyltransferas 100.0 2.9E-30 6.3E-35 249.9 29.0 259 108-397 8-272 (292)
32 PRK13387 1,4-dihydroxy-2-napht 100.0 9.7E-30 2.1E-34 251.2 30.2 238 112-357 3-262 (317)
33 TIGR01473 cyoE_ctaB protoheme 100.0 9.3E-30 2E-34 247.6 29.5 264 113-396 1-270 (280)
34 PRK13362 protoheme IX farnesyl 100.0 1.2E-28 2.6E-33 242.3 30.0 208 108-333 9-219 (306)
35 PLN02922 prenyltransferase 100.0 1.1E-27 2.3E-32 236.2 32.2 237 110-356 13-260 (315)
36 PRK07419 1,4-dihydroxy-2-napht 100.0 6E-28 1.3E-32 236.8 29.8 234 109-358 9-248 (304)
37 TIGR00751 menA 1,4-dihydroxy-2 100.0 5.6E-28 1.2E-32 235.2 29.2 224 120-358 1-238 (284)
38 PRK12871 ubiA prenyltransferas 100.0 9.3E-28 2E-32 235.1 28.7 257 110-391 3-278 (297)
39 TIGR02235 menA_cyano-plnt 1,4- 100.0 1.5E-26 3.2E-31 225.4 31.0 229 115-359 2-236 (285)
40 PRK13105 ubiA prenyltransferas 100.0 1E-26 2.2E-31 225.6 27.4 218 112-347 1-223 (282)
41 COG1575 MenA 1,4-dihydroxy-2-n 100.0 2.3E-26 5.1E-31 221.7 28.9 272 110-399 6-294 (303)
42 PRK12872 ubiA prenyltransferas 100.0 1.3E-26 2.8E-31 225.7 25.6 230 110-356 2-233 (285)
43 PF01040 UbiA: UbiA prenyltran 100.0 2.3E-26 5E-31 219.0 24.8 243 127-392 4-248 (257)
44 KOG1381 Para-hydroxybenzoate-p 99.9 5.1E-27 1.1E-31 219.7 11.5 264 108-392 60-328 (353)
45 PRK12875 ubiA prenyltransferas 99.9 2.6E-24 5.6E-29 209.2 28.1 221 108-348 4-229 (282)
46 PRK13591 ubiA prenyltransferas 99.9 1.6E-24 3.5E-29 210.8 26.1 179 157-351 64-246 (307)
47 PLN02776 prenyltransferase 99.9 6E-24 1.3E-28 210.2 28.9 259 118-398 1-265 (341)
48 COG0109 CyoE Polyprenyltransfe 99.9 2.2E-24 4.9E-29 207.6 21.9 263 108-399 14-286 (304)
49 PRK13592 ubiA prenyltransferas 99.9 4.4E-23 9.6E-28 199.3 25.5 178 152-343 47-232 (299)
50 PRK08238 hypothetical protein; 99.9 3.9E-20 8.4E-25 191.9 25.7 191 106-317 185-377 (479)
51 PRK12324 phosphoribose diphosp 99.9 1.6E-19 3.5E-24 176.4 25.5 149 108-266 7-157 (295)
52 KOG4581 Predicted membrane pro 99.4 1E-12 2.2E-17 121.3 7.9 231 108-350 57-295 (359)
53 KOG1380 Heme A farnesyltransfe 99.4 5.8E-13 1.3E-17 128.4 5.3 210 110-340 92-308 (409)
54 COG1575 MenA 1,4-dihydroxy-2-n 92.3 0.81 1.7E-05 45.2 9.0 46 155-202 180-225 (303)
55 PRK13591 ubiA prenyltransferas 90.2 0.95 2.1E-05 44.9 7.3 66 169-237 197-271 (307)
56 PRK12872 ubiA prenyltransferas 90.0 3.3 7.1E-05 40.2 10.9 35 158-192 168-203 (285)
57 PRK07419 1,4-dihydroxy-2-napht 87.2 5.8 0.00013 39.4 10.6 39 162-203 185-224 (304)
58 PRK13592 ubiA prenyltransferas 87.0 13 0.00029 36.8 12.7 45 296-341 58-105 (299)
59 TIGR01474 ubiA_proteo 4-hydrox 86.4 7.3 0.00016 38.0 10.7 36 157-192 166-202 (281)
60 PRK13387 1,4-dihydroxy-2-napht 86.2 3.2 7E-05 41.3 8.2 50 156-208 194-244 (317)
61 PLN00012 chlorophyll synthetas 85.3 9 0.00019 39.2 11.1 33 160-192 261-294 (375)
62 PRK13105 ubiA prenyltransferas 84.3 5.1 0.00011 39.3 8.5 57 158-217 167-224 (282)
63 PRK12847 ubiA 4-hydroxybenzoat 84.1 10 0.00022 36.9 10.6 36 157-192 171-207 (285)
64 PRK12875 ubiA prenyltransferas 83.9 26 0.00057 34.3 13.3 57 158-217 172-229 (282)
65 PLN02922 prenyltransferase 83.8 4.8 0.0001 40.1 8.2 44 158-204 195-239 (315)
66 TIGR01475 ubiA_other putative 83.2 7.2 0.00016 38.0 9.1 36 157-192 164-200 (282)
67 TIGR02235 menA_cyano-plnt 1,4- 82.2 14 0.00029 36.3 10.6 46 159-207 169-215 (285)
68 PRK13595 ubiA prenyltransferas 82.1 27 0.00059 34.5 12.6 23 296-318 59-81 (292)
69 PRK06080 1,4-dihydroxy-2-napht 81.5 15 0.00032 35.9 10.6 47 158-207 175-222 (293)
70 PRK12324 phosphoribose diphosp 81.4 7.5 0.00016 38.4 8.5 40 297-336 59-102 (295)
71 PRK07566 bacteriochlorophyll/c 78.6 8.2 0.00018 38.3 7.8 31 162-192 200-231 (314)
72 TIGR02056 ChlG chlorophyll syn 78.3 9.7 0.00021 37.7 8.2 40 161-203 193-233 (306)
73 PRK12884 ubiA prenyltransferas 78.1 16 0.00035 35.3 9.6 29 297-326 50-78 (279)
74 PRK12848 ubiA 4-hydroxybenzoat 77.7 29 0.00063 33.8 11.3 37 156-192 167-204 (282)
75 PRK13106 ubiA prenyltransferas 77.6 7.1 0.00015 38.6 7.0 35 157-191 183-218 (300)
76 TIGR00751 menA 1,4-dihydroxy-2 77.0 24 0.00052 34.6 10.5 42 161-205 174-216 (284)
77 PF01040 UbiA: UbiA prenyltran 76.9 15 0.00033 34.4 8.9 32 295-326 34-66 (257)
78 PRK12887 ubiA tocopherol phyty 76.6 14 0.0003 36.7 8.8 34 158-191 189-223 (308)
79 PRK12888 ubiA prenyltransferas 75.8 34 0.00073 33.5 11.2 36 157-192 165-201 (284)
80 COG0382 UbiA 4-hydroxybenzoate 75.8 20 0.00044 34.9 9.6 31 296-326 59-90 (289)
81 PRK12870 ubiA 4-hydroxybenzoat 75.4 28 0.00062 34.1 10.5 37 157-193 172-209 (290)
82 PRK12886 ubiA prenyltransferas 74.9 11 0.00024 37.1 7.5 35 158-192 169-204 (291)
83 TIGR01476 chlor_syn_BchG bacte 74.8 13 0.00029 36.1 8.0 31 162-192 172-203 (283)
84 PRK12882 ubiA prenyltransferas 74.4 17 0.00037 35.1 8.7 34 159-192 165-199 (276)
85 PRK12392 bacteriochlorophyll c 72.8 15 0.00033 36.8 8.0 34 158-191 187-221 (331)
86 PRK12871 ubiA prenyltransferas 72.3 33 0.00073 33.8 10.2 36 157-192 181-217 (297)
87 PRK12883 ubiA prenyltransferas 70.9 15 0.00032 35.7 7.3 32 161-192 164-196 (277)
88 PRK12874 ubiA prenyltransferas 70.9 42 0.00091 33.0 10.5 35 158-192 174-209 (291)
89 PRK09573 (S)-2,3-di-O-geranylg 68.9 43 0.00093 32.5 10.0 40 297-337 50-92 (279)
90 PLN02809 4-hydroxybenzoate non 65.6 44 0.00094 32.9 9.4 30 297-326 58-88 (289)
91 PRK12878 ubiA 4-hydroxybenzoat 65.3 72 0.0016 31.7 11.0 35 158-192 199-234 (314)
92 PRK12895 ubiA prenyltransferas 63.8 72 0.0016 31.3 10.5 35 157-191 165-200 (286)
93 PRK08238 hypothetical protein; 63.6 30 0.00065 36.6 8.3 42 296-337 238-283 (479)
94 PRK12869 ubiA protoheme IX far 61.2 1.4E+02 0.003 29.0 11.9 38 297-334 49-90 (279)
95 PRK05951 ubiA prenyltransferas 59.8 85 0.0018 30.8 10.3 34 162-198 182-216 (296)
96 PRK12873 ubiA prenyltransferas 59.5 86 0.0019 31.0 10.2 35 158-192 177-212 (294)
97 PRK04375 protoheme IX farnesyl 59.5 1.2E+02 0.0027 29.6 11.4 40 297-336 57-100 (296)
98 PRK11383 hypothetical protein; 59.4 1.1E+02 0.0025 26.9 9.6 79 227-312 50-131 (145)
99 PRK13362 protoheme IX farnesyl 58.9 55 0.0012 32.4 8.8 40 297-336 60-103 (306)
100 TIGR01473 cyoE_ctaB protoheme 58.2 63 0.0014 31.3 9.0 41 297-337 48-92 (280)
101 PRK04214 rbn ribonuclease BN/u 56.9 88 0.0019 32.3 10.2 21 158-178 112-132 (412)
102 PLN02878 homogentisate phytylt 52.1 77 0.0017 31.1 8.3 45 160-207 165-210 (280)
103 PRK12876 ubiA prenyltransferas 50.0 1.9E+02 0.0042 28.6 10.9 33 160-192 181-214 (300)
104 TIGR02748 GerC3_HepT heptapren 47.6 1.9E+02 0.0041 28.7 10.6 50 158-210 70-119 (319)
105 PLN02776 prenyltransferase 47.0 1.1E+02 0.0024 30.9 8.8 39 297-335 42-84 (341)
106 COG1295 Rbn Ribonuclease BN fa 45.8 2.8E+02 0.0061 27.3 11.4 23 156-178 111-133 (303)
107 cd00867 Trans_IPPS Trans-Isopr 33.9 24 0.00052 32.8 1.7 32 296-327 158-199 (236)
108 PF04341 DUF485: Protein of un 32.6 2.5E+02 0.0053 22.5 7.2 39 144-182 51-89 (91)
109 PF04284 DUF441: Protein of un 32.2 2.4E+02 0.0053 24.8 7.4 14 186-199 59-72 (140)
110 TIGR03750 conj_TIGR03750 conju 28.1 2.3E+02 0.005 23.9 6.4 34 178-213 5-38 (111)
111 PRK10581 geranyltranstransfera 26.1 54 0.0012 32.4 2.7 38 296-333 215-263 (299)
112 KOG4016 Synaptic vesicle prote 23.8 3.8E+02 0.0083 25.3 7.5 29 241-269 97-125 (233)
113 PF11990 DUF3487: Protein of u 23.2 3E+02 0.0066 23.5 6.4 40 178-219 8-51 (121)
114 COG4125 Predicted membrane pro 23.1 3.9E+02 0.0085 23.5 7.0 27 155-181 45-71 (149)
115 PRK10299 PhoPQ regulatory prot 22.7 1.1E+02 0.0024 21.7 2.9 22 159-180 13-34 (47)
116 PF06645 SPC12: Microsomal sig 20.9 3.5E+02 0.0076 21.0 5.8 44 325-368 5-49 (76)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=2.6e-54 Score=412.57 Aligned_cols=268 Identities=49% Similarity=0.863 Sum_probs=246.3
Q ss_pred HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHHHHHHHHHHH
Q 015791 132 TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLA 211 (400)
Q Consensus 132 l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~ 211 (400)
+..+++|.+..+++++.++.+.+.++++.+|++.+..++|||+|+|+||+|||+||+|||++|+++++.+++++.++|++
T Consensus 4 ~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~ 83 (280)
T PLN02878 4 TSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFG 83 (280)
T ss_pred hHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34466777766777777778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHH
Q 015791 212 IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAA 291 (400)
Q Consensus 212 l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~ 291 (400)
+++..|++++.++++.+++++++||.++||+|+||.++++..|+..+++....+|+|.|++++++|++..+++++++.++
T Consensus 84 la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~ 163 (280)
T PLN02878 84 MGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATA 163 (280)
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHH
Confidence 99999998888887778789999998889999999999999988888888888999999999999977666666777777
Q ss_pred HHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 015791 292 IISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLL 371 (400)
Q Consensus 292 ~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l 371 (400)
++.++.++++++||++|+||||+.|+||+|+++|+|++.+++..++.++|+..+++|+.++..+...++.+||.+++..+
T Consensus 164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L 243 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASIL 243 (280)
T ss_pred HHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999988888888888888899999999999999
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHHhhh
Q 015791 372 WLRAQTVDLSNNASTYSFYMFIWKAIVL 399 (400)
Q Consensus 372 ~~~~~~~d~~~~~~~~~f~~~i~~l~~~ 399 (400)
|+|.+++|+++++++++||||||||||+
T Consensus 244 ~~rs~~vD~~sk~~i~~fY~fiwklfy~ 271 (280)
T PLN02878 244 WQRAQSVDLSSKAAITSFYMFIWKLFYA 271 (280)
T ss_pred HHHhHhcCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=2.4e-51 Score=403.35 Aligned_cols=295 Identities=33% Similarity=0.554 Sum_probs=247.5
Q ss_pred chhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 015791 101 STSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEID 179 (400)
Q Consensus 101 ~~~~~~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D 179 (400)
|++.+++..+.+++|+|++|||+.+++.++++.+.++|....++ .....+...+.++++..+++.+.+++|||+|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56778888999999999999999999999999888876433222 12112233444555555666666669999999999
Q ss_pred ccCCCCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHH
Q 015791 180 KVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (400)
Q Consensus 180 ~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~ 259 (400)
++|||+||+++|++|+++++.+.+++.++|+.+++..|++.+.+++ ++.+++++|| .||+|+||+|+.++++++..+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~-~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVG-ISLLIGTAYS--LPPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHc--CCchhhcccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999987766654 6888999999 599999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHH
Q 015791 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (400)
Q Consensus 260 g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ 339 (400)
|.++.+|.+.+.+.. .++....+...++..+++.+++++++++||++|+|||++.|+||+|+++|++++.+++..++.+
T Consensus 159 g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~ 237 (308)
T PRK12887 159 GVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTA 237 (308)
T ss_pred HHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHH
Confidence 888888877654432 2333334455566677888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHhhh
Q 015791 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVL 399 (400)
Q Consensus 340 ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~i~~l~~~ 399 (400)
+|+..++.++....++....+.++|++++..+++|.+++|+++++++++|||||||+||+
T Consensus 238 ~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ 297 (308)
T PRK12887 238 CYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFL 297 (308)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH
Confidence 999988877777666666667799999999999999999999999999999999999996
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=288.45 Aligned_cols=259 Identities=17% Similarity=0.154 Sum_probs=203.7
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCCc
Q 015791 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL 188 (400)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl 188 (400)
++++|+|++||++....+..++.|.++|.+..+ ++. .+++.+++.+++++++|++||+.|+|+|++|+ ++||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 478999999999999999999999999854322 222 13456678899999999999999999999995 59999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHH
Q 015791 189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (400)
Q Consensus 189 ~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~ 268 (400)
|+|++|+++|+.+.+++.++++.+++.+|+.++.++. ..+.+...|+. +||++.++|+.++...|..+.+|+.
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~ 149 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL 149 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999998877665 45556666764 8999999999888888865555543
Q ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 015791 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (400)
Q Consensus 269 ~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g 348 (400)
+ + ++...+....+++.+...+|+.++|++|+++|+|+|++.|+||+|+++|++++.++...+..++.....+.+
T Consensus 150 A-----v-~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g 223 (286)
T PRK12895 150 A-----V-IPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISG 223 (286)
T ss_pred H-----H-cCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 222222222334455667789999999999999999999999999999999988776666666655555555
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHH-HHHHH
Q 015791 349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYM 391 (400)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~-~~f~~ 391 (400)
.... ...+.++.++.+..+.+|++.+|.+|+++| .+||.
T Consensus 224 ~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~ 263 (286)
T PRK12895 224 IYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFN 263 (286)
T ss_pred HHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4433 245567777888889999999999999999 66664
No 4
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2e-35 Score=289.15 Aligned_cols=269 Identities=16% Similarity=0.149 Sum_probs=206.1
Q ss_pred CcCchhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 015791 98 DINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 177 (400)
Q Consensus 98 ~~~~~~~~~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e 177 (400)
++||+ .++..+.++++|+|++||++.++...+.+.|.++|.+..+ ++.. +++.+++.+++++++|++||++|+|
T Consensus 2 ~~~~~-~~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~d 75 (300)
T PRK13106 2 SWDPG-GLNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLE 75 (300)
T ss_pred CCCcc-cchhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 36773 4455788999999999999999999989999999865432 3322 4567789999999999999999999
Q ss_pred ccccCC--CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHH
Q 015791 178 IDKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCM 255 (400)
Q Consensus 178 ~D~ink--p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i 255 (400)
+|++|+ ++||+++|++|+++|+.+.+++.+.++.++..+|+.+..++. +++++...|+. +||++.++|+.+
T Consensus 76 iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~l 148 (300)
T PRK13106 76 IDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHL 148 (300)
T ss_pred cccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHH
Confidence 999985 699999999999999999877777777777888988777665 45556778985 799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCc-----cchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHH
Q 015791 256 VTVFGLVYQFSFFIHFQKYVLGRPV-----VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 330 (400)
Q Consensus 256 ~~~~g~~~~~G~~~~~~~~v~g~~~-----~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~ 330 (400)
+..++..+..|.... .|... ..+...++..+...+|+.++|++|+++|+|+|++.|+||+|+++| +++.
T Consensus 149 g~~~~~~~~~G~~a~-----~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~ 222 (300)
T PRK13106 149 ASIQGLAVFSGAVAV-----LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWAL 222 (300)
T ss_pred HHHHHHHHHHHHHHH-----cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHH
Confidence 888887666665332 23211 011122333445567889999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHH
Q 015791 331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY 390 (400)
Q Consensus 331 ~l~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~ 390 (400)
+++..+..++.++..+.+....+++ .+.++..+....+.+++..++.+ +.|...|
T Consensus 223 ~~~~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~F 277 (300)
T PRK13106 223 TFAGLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK--GDFGRAF 277 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc--hHHHHHH
Confidence 8877777776666666666555554 34455666677888899988877 5565443
No 5
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=1.3e-34 Score=282.01 Aligned_cols=263 Identities=17% Similarity=0.200 Sum_probs=202.6
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCCCCc
Q 015791 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPL 188 (400)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--kp~RPl 188 (400)
++++|++++||++.....+.++.|.++|.+..+ ++. .+++++++.+++++++|++||++|+|+|++| +|+||+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 368999999999999998888889998855432 332 2456788999999999999999999999998 579999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHH
Q 015791 189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (400)
Q Consensus 189 ~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~ 268 (400)
++|++|+++++.+++++.++++.+++.+|+.+..++. .+.++.+.|+. +||++.+++++.+...+..+.+|+.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~ 148 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV 148 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888888888887776654 45666889985 7999999999887776665555543
Q ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 015791 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (400)
Q Consensus 269 ~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g 348 (400)
+. .|. .......++..+...+|+.+.+++||++|+|+|+++|+||+|+++|+|++.++...+..++++..++.+
T Consensus 149 a~-----~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (282)
T TIGR01475 149 AV-----IGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG 222 (282)
T ss_pred HH-----hCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 122 221122333455566778899999999999999999999999999999998887777777776666666
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHH-HHHHHH
Q 015791 349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMFIW 394 (400)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~-f~~~i~ 394 (400)
.....++ .+.++..+....++++.+.+|.+|+++|++ ||....
T Consensus 223 ~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~~~ 266 (282)
T TIGR01475 223 FYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYANG 266 (282)
T ss_pred HHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhH
Confidence 5555443 344455555677888888899999888876 555533
No 6
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.8e-34 Score=277.75 Aligned_cols=270 Identities=19% Similarity=0.171 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhccc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC
Q 015791 106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN 182 (400)
Q Consensus 106 ~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~---~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in 182 (400)
++.++++++|+|++||++.+.++..++.|.++|... ...+++. .+++++++.+++++++|++|||+|+|+|++|
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 357789999999999999999999999998887521 1123433 2467788999999999999999999999999
Q ss_pred C--CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHH
Q 015791 183 K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 260 (400)
Q Consensus 183 k--p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g 260 (400)
+ |+||+++|++|+++++.+++++.++++.+++.+|+.+..+++ ..+++...||. +||++.++++..+...+
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~ 151 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PFLIVLGGYSY------FKRFSSLAHLVLGLSLG 151 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence 7 599999999999999999999988888888888988777664 46667889995 89999999998887777
Q ss_pred HHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHH
Q 015791 261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (400)
Q Consensus 261 ~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~a 340 (400)
..+.+|+.. + ++... .+.+++.+.+.+|+.+.+++++++|+|+|+++|+||+|+++|++++.++......+.
T Consensus 152 ~~~l~G~~a-----v-~g~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~ 223 (291)
T PRK12874 152 LAPIAGVVA-----V-LGEIP--LWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA 223 (291)
T ss_pred HHHHHHHHH-----H-cCCCc--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence 666666533 2 22222 223344555677899999999999999999999999999999999887655555444
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Q 015791 341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKA 396 (400)
Q Consensus 341 y~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~i~~l 396 (400)
.+.....+......+ .+.++..+.+.+++++.+.++.++++.|+.||.....+
T Consensus 224 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~sn~~l 276 (291)
T PRK12874 224 VLFWLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTLNGYL 276 (291)
T ss_pred HHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 444444343333332 23345556666777888888777777888887765544
No 7
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=3e-34 Score=280.26 Aligned_cols=261 Identities=16% Similarity=0.143 Sum_probs=198.4
Q ss_pred HHHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-
Q 015791 108 LLKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK- 183 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink- 183 (400)
+++++++|++++||+++.++. ++++.|.++|.+..+ ++.. +++++++.+++++++|++||++|+|+|+.++
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 457889999999999987766 467888888854332 3321 4567789999999999999999999998654
Q ss_pred C-CCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791 184 P-DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (400)
Q Consensus 184 p-~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~ 262 (400)
+ +||+++|++|+++|..+++++.++++.+++.+|+.++.+++ .+.++.++||. .||++.++++..+..++..
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~ 152 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA 152 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence 4 89999999999999999999999999999989988877765 46667899985 7999988998877777765
Q ss_pred HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (400)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~ 342 (400)
+..|+.. +.|. . +...+++.+.+.+|+.+++++++++|+|+|+++|+||+|+++|++++.++... ..+...
T Consensus 153 ~l~g~~a-----~~g~-~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~-~~~~~~ 223 (290)
T PRK12870 153 VLISWSA-----VTGH-L--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF-FALTVG 223 (290)
T ss_pred HHHHHHH-----HcCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH-HHHHHH
Confidence 5555432 1232 2 22334445566778999999999999999999999999999999988876653 333333
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc--cCCChHHHHHHHHH
Q 015791 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV--DLSNNASTYSFYMF 392 (400)
Q Consensus 343 ~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~--d~~~~~~~~~f~~~ 392 (400)
.....+...+.++. +.++..+.+..+.+++..+ |.++++.|.+||+.
T Consensus 224 ~l~~~~~~~~~~~~---y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~ 272 (290)
T PRK12870 224 FLAILGVLLELHLP---FWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQ 272 (290)
T ss_pred HHHHHHHHhCCcHH---HHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 33444555444433 3345556667788888888 77788889887765
No 8
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.9e-34 Score=276.48 Aligned_cols=260 Identities=21% Similarity=0.246 Sum_probs=190.3
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCccc
Q 015791 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS 190 (400)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s 190 (400)
++++|++++||++...++++.+.|.++|.+..++ .. ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 3789999999999999999999999998543211 11 145678899999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 015791 191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (400)
Q Consensus 191 G~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~ 270 (400)
|++|+++++.++.++.++|+.+++.+|+..+.+++ ++.++.++|+. |+||++.++|+.++...|..+.+|...
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~-~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~- 150 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIAL-FNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA- 150 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999989987777664 46667889985 589999889998877666554444321
Q ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 015791 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 350 (400)
Q Consensus 271 ~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~~ 350 (400)
.+... ....+...+..+++..+++++||++|+|+|+++|+||+|+++|+|++.++.........+...+.-..
T Consensus 151 -----~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~ 223 (276)
T PRK12882 151 -----VGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL 223 (276)
T ss_pred -----hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23211 11122233344455778999999999999999999999999999999887666554444333221112
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHHHHHHHccCCChHHHHHHHHH
Q 015791 351 SSFQLVKLVSIIGHST-LAFLLWLRAQTVDLSNNASTYSFYMF 392 (400)
Q Consensus 351 ~~~~~~~~~~~~g~~~-l~~~l~~~~~~~d~~~~~~~~~f~~~ 392 (400)
...++ .+.+...+ .+.++....+..|.+|++.|.++|++
T Consensus 224 ~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~ 263 (276)
T PRK12882 224 STFGL---WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKY 263 (276)
T ss_pred HHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22232 22222222 23344456677788888888765544
No 9
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=6.8e-34 Score=276.97 Aligned_cols=221 Identities=20% Similarity=0.242 Sum_probs=173.2
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccC
Q 015791 113 HALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG 191 (400)
Q Consensus 113 ~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG 191 (400)
++|++++||+++..++.+++.|.+++...... +++.. .++.++++..++++++|++|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 36899999999999999999999888422222 33321 1344677999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 015791 192 DLSMGTGLAITLTLSLTSLAIALSLQSPP-LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (400)
Q Consensus 192 ~is~~~a~~~~~~l~~lgl~l~~~lg~~~-l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~ 270 (400)
++|+++++.+..++.++++++++.++.+. ..++ +++++.+++|| .||+|+||+++++++.++..++.....+.+.
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~- 154 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA- 154 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999988887666 4444 35777899999 4899999999889998776555433222221
Q ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 015791 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 346 (400)
Q Consensus 271 ~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~ 346 (400)
+.+ .. +...++..+..++++.+++++||++|+|+|+++|+||+|+++|+|++.+++..++.++|+..+.
T Consensus 155 ----~~~-~~--~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 155 ----IFA-PL--TWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred ----HhC-CC--CHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 122 22 2233344455566788889999999999999999999999999999999888877777765544
No 10
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=1.5e-33 Score=274.87 Aligned_cols=262 Identities=22% Similarity=0.143 Sum_probs=197.8
Q ss_pred HHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--
Q 015791 109 LKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-- 183 (400)
Q Consensus 109 ~~~l~~y~~l~Rp~~~~~~~l~~---l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-- 183 (400)
++++++|+|++|.+++.++.+.. ..|.+++....+..++.. +++.+++.+++++++|++||++|+|+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT 79 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVERT 79 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence 46889999999999988776544 445555532111122321 4567789999999999999999999999875
Q ss_pred CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHH
Q 015791 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (400)
Q Consensus 184 p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~ 263 (400)
|+||+++|++|+++|+.+..++.++++.+.+.+|+.++.+++ +++++.+.||. +||++.++++..+...+..+
T Consensus 80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~ 152 (289)
T PLN02809 80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGA 152 (289)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HHhcCcchHHHHHHHHHHHH
Confidence 599999999999999999999999999999888987777765 46777899985 89999999987766666555
Q ss_pred HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 015791 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (400)
Q Consensus 264 ~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~ 343 (400)
.+|+.. +.|.. .. ...+.+.....+|+.+.+++++++|+|+|++.|+||+|+++|++...+++ .+..+.+..
T Consensus 153 l~g~~a-----v~g~~-~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~ 224 (289)
T PLN02809 153 LLGWAA-----VKGSL-DP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGG 224 (289)
T ss_pred HHHHHH-----HhCCC-Ch-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHH
Confidence 455422 22322 11 12222455556678899999999999999999999999999999776665 355555665
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHH
Q 015791 344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 391 (400)
Q Consensus 344 ~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~ 391 (400)
...++.....++ .+.+++++.+..+++|++.+|.+|+++|.++|+
T Consensus 225 l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~ 269 (289)
T PLN02809 225 LALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV 269 (289)
T ss_pred HHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555666555443 334567777888999999999999999988765
No 11
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.4e-33 Score=274.36 Aligned_cols=255 Identities=19% Similarity=0.240 Sum_probs=189.6
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCccc
Q 015791 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS 190 (400)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s 190 (400)
++++|++++||+++..++++.+.|.++|.+.. .++. .+++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 36889999999999999999999999985422 2332 245778899999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 015791 191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (400)
Q Consensus 191 G~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~ 270 (400)
|++|+++++.++.++.++++.+++.+|+.++.+++ ++.++.++||. ++||++.++|++++...|..+..|....
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~ 150 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV 150 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999889988877765 46667899985 3899999899999988887766665332
Q ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 015791 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 350 (400)
Q Consensus 271 ~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~~ 350 (400)
+. .. ..+++.....+|+++++++||++|+|+|+++|+||+|+++|+|++.++......+......+....
T Consensus 151 ------~~--~~--~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK09573 151 ------FN--VL--RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFL 220 (279)
T ss_pred ------cc--ch--HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11 122333444456778899999999999999999999999999999887766554444433322111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-HHHccCCChHHHHHH
Q 015791 351 SSFQLVKLVSIIGHSTLAFLLWLR-AQTVDLSNNASTYSF 389 (400)
Q Consensus 351 ~~~~~~~~~~~~g~~~l~~~l~~~-~~~~d~~~~~~~~~f 389 (400)
...+ +.+.++.++....+.++ .+..+.++++.|+..
T Consensus 221 ~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 257 (279)
T PRK09573 221 GIFG---IYYLIVVIICDILFIIAMLILLKNPSIEGASKA 257 (279)
T ss_pred HHHH---HHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence 1122 33444444444444555 334455566666543
No 12
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=1.8e-33 Score=277.80 Aligned_cols=226 Identities=20% Similarity=0.237 Sum_probs=175.7
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHH-HHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFME-FLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL 186 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~-~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R 186 (400)
.++++++|++++||+++..++.+++.|.+.+.. .+........ ++..+++..++++++|++|||+|+|+|++|+|+|
T Consensus 23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R 100 (314)
T PRK07566 23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR 100 (314)
T ss_pred cchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence 467889999999999999988888888876532 1222211111 2345677888999999999999999999999999
Q ss_pred CcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHH
Q 015791 187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS 266 (400)
Q Consensus 187 Pl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G 266 (400)
|+++|++|+++++.++.++.++++.+++.+|++.+.+++ ++++++++||. ||+++||+++++|+.++..++..+.++
T Consensus 101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l-~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~ 177 (314)
T PRK07566 101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAAL-LGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWA 177 (314)
T ss_pred CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHH-HHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999889987777664 57778999994 899999999889998887766543332
Q ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHH
Q 015791 267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 344 (400)
Q Consensus 267 ~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~ 344 (400)
.... +.++.. +...++..++.++++.+++++||++|+|+|+++|+||+|+++|++++.+++..++.++|+..
T Consensus 178 g~~~----~~~~~~--~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 178 GAAA----FGAGLP--SWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred HHHH----hccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 2211 111122 22334445555567888899999999999999999999999999999998877777776654
No 13
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=8.7e-33 Score=277.50 Aligned_cols=272 Identities=18% Similarity=0.200 Sum_probs=184.8
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKY---FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP 184 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~---l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp 184 (400)
-.+++++|++++||+++...++++++|.+.. + .+++.. +..++..+++..++++++|++|||+|+|+|++|+|
T Consensus 81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~ 156 (375)
T PLN00012 81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEP 156 (375)
T ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCC
Confidence 3467899999999999999999999998853 2 233321 11235567788899999999999999999999999
Q ss_pred CCCcccCcCCHHHHHHHHHHHHHHHHHHHHHh-------chhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHH
Q 015791 185 DLPLASGDLSMGTGLAITLTLSLTSLAIALSL-------QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVT 257 (400)
Q Consensus 185 ~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~l-------g~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~ 257 (400)
+||+++|++++++++.+..++.++++.+++.+ +++.+.+++ ++++++++|| .||+++||++++|++.++.
T Consensus 157 ~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l-~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~ 233 (375)
T PLN00012 157 YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL-GGSLLSYIYS--APPLKLKQNGWIGNYALGA 233 (375)
T ss_pred CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHhhhhc--CCchhhhHhccHhHHHHHH
Confidence 99999999999999987766666666555443 344444443 5677899999 4899999999999987776
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHH
Q 015791 258 VFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL 337 (400)
Q Consensus 258 ~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~ 337 (400)
.++..+.++.+. +.|. . +...++..++.+++++++++.||++|+|+|++.|+||+||++|++++.+++..++
T Consensus 234 ~~~~lp~~~g~a-----~~g~-~--s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l 305 (375)
T PLN00012 234 SYISLPWWAGQA-----LFGT-L--TPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSI 305 (375)
T ss_pred HHHHHHHHHHHH-----HcCC-C--CHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHH
Confidence 665443322221 2232 2 2233444555667788999999999999999999999999999999998876544
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHhh
Q 015791 338 FFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIV 398 (400)
Q Consensus 338 ~~ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~i~~l~~ 398 (400)
.+..+..+ ++...... ..+....+.+....+.+..+...+|+.++...|...=+.++
T Consensus 306 ~l~~l~~~--~~l~~~~~--~~y~~~~~~l~l~~l~~~~~~~~~~p~~~~~~~~~~a~~~~ 362 (375)
T PLN00012 306 DITQLSVA--GYLLAIGK--PYYALALLGLIIPQIFFQFKYFLPDPVKNDVKYQASAQPFL 362 (375)
T ss_pred HHHHHHHH--HHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 44433322 22221111 11111111112222223333444577777777766544443
No 14
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-33 Score=274.72 Aligned_cols=258 Identities=16% Similarity=0.121 Sum_probs=198.0
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHhcc-cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCCc
Q 015791 112 LHALYVFTRPFAMIGTIVGITSIAILPLQ-SFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL 188 (400)
Q Consensus 112 l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~-~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl 188 (400)
+++|++++||++.+.+...++.|.+.+.. ..+.+++.. +++.+++.+++++++|++||++|+|+|++|+ |+||+
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL 78 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence 67999999999988877777767666631 112234322 4567889999999999999999999999998 59999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHH
Q 015791 189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (400)
Q Consensus 189 ~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~ 268 (400)
|+|++|+++++.+.+++.++++.++..+|+.++.++. ++++....|+. .||++.++++..+...+..+..|++
T Consensus 79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~ 151 (284)
T PRK12888 79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAWI 151 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999988888888888888988777664 45556788985 7999999999877766655545533
Q ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 015791 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (400)
Q Consensus 269 ~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g 348 (400)
. +.|. . +...+++.+...+|+.+++++|+++|+|+|++.|+||+|+++|+|++.++...+..+.++...+.+
T Consensus 152 a-----~~g~-~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~ 223 (284)
T PRK12888 152 A-----VTGT-W--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFG 223 (284)
T ss_pred H-----HcCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 2 1132 2 223344556667788899999999999999999999999999999998877666666666555556
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHH-HHH
Q 015791 349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFY 390 (400)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~-~f~ 390 (400)
.....++. +.++..+.+..+.+|++.+|.+|++.|. .||
T Consensus 224 ~~~~~~~~---y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 224 LAVGFGAL---WWIGLAITAGAFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHhCCcHH---HHHHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 65555543 3455667778888999999999988886 555
No 15
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.7e-33 Score=272.10 Aligned_cols=256 Identities=19% Similarity=0.290 Sum_probs=193.1
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcc
Q 015791 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA 189 (400)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~ 189 (400)
+++++|++++||+++..+.++.+.|.++|.+..+ +. .+++++++.+++++++|++||++|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 4789999999999999999999999999854322 21 24567789999999999999999999999999999999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHH
Q 015791 190 SGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI 269 (400)
Q Consensus 190 sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~ 269 (400)
+|++|+++++.+++++.++++.+++.+|+..+.+++ +++++++.||. ++||++++++++++..++..+..|...
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~ 149 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVI-LVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA 149 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888987777664 56778999995 489999889998887776555455332
Q ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 015791 270 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA 349 (400)
Q Consensus 270 ~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~ 349 (400)
.+... ...+.......+|+.+.++++|++|+|+|+++|+||+|+++|+|++.++...+..+.++...+...
T Consensus 150 ------~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK12884 150 ------VGELN---EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL 220 (279)
T ss_pred ------hCCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12221 123343445556778889999999999999999999999999999998877776666655444333
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH-HHccCCChHHHHHH
Q 015791 350 SSSFQLVKLVSIIGHSTLAFLLWLRA-QTVDLSNNASTYSF 389 (400)
Q Consensus 350 ~~~~~~~~~~~~~g~~~l~~~l~~~~-~~~d~~~~~~~~~f 389 (400)
....++. +.+...+....+.++. +.++.+|++.++.+
T Consensus 221 ~~~~~~~---y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (279)
T PRK12884 221 FGIFNIL---YLAPVLVADLIFLYSAYSLLRSQDRETIRKV 258 (279)
T ss_pred HHHhhHH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3323333 3333334444444554 45565666666654
No 16
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.3e-33 Score=272.17 Aligned_cols=262 Identities=19% Similarity=0.179 Sum_probs=195.3
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD 185 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~ 185 (400)
+.+++++|+|++||++......+.+.|.++|.++.++ +. .+++++++.+++++++|++|||+|+|+|++|+ ++
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 4577899999999999999888889999998543332 21 24567789999999999999999999999998 58
Q ss_pred CCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHH
Q 015791 186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF 265 (400)
Q Consensus 186 RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~ 265 (400)
||+++|++|+++|..+.+.+.+.++.+++..|+.+..+++ +++++.+.|+. +||++.++++..+...+..+..
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~ 151 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG 151 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence 9999999999999988776666666666778988777765 35666899995 7999999998777665554444
Q ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 015791 266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 345 (400)
Q Consensus 266 G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~ 345 (400)
|++. +.| ... ...+++.+.+.+|+.+.+++++++|+|+|+++|+||+|+++|++++.++......+.+...+
T Consensus 152 g~~a-----~~g-~~~--~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~ 223 (291)
T PRK12886 152 AWIA-----IRG-TIE--LPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF 223 (291)
T ss_pred HHHH-----HcC-CCc--HHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence 4332 113 222 23344455566778889999999999999999999999999999998876666566665555
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC-hHHHHHHHHH
Q 015791 346 IVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN-NASTYSFYMF 392 (400)
Q Consensus 346 ~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~-~~~~~~f~~~ 392 (400)
+.+.....++ .+.++.++....+.++.+..+.+| ++.|+++|.+
T Consensus 224 ~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~ 268 (291)
T PRK12886 224 ALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNM 268 (291)
T ss_pred HHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 5555444443 334444445555567888888877 4577775554
No 17
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=6.3e-33 Score=270.49 Aligned_cols=262 Identities=18% Similarity=0.194 Sum_probs=194.0
Q ss_pred HHHHHHHHHhhhccchHHH---HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-
Q 015791 108 LLKKLHALYVFTRPFAMIG---TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK- 183 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~---~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink- 183 (400)
..+++++|++++||+++.+ ..++++.|.++|.... ..++. .+++++++.+++++++|++|||+|+|+|+.|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 3457899999999998775 4567788888885432 23332 24677889999999999999999999999755
Q ss_pred -CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791 184 -PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (400)
Q Consensus 184 -p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~ 262 (400)
++||+++|++|+++++.+++++.++++.+++.+|+..+.+++ ++.++++.||. .||++.++++..+..++..
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~ 151 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSF-IAVILIVLYPL------MKRFFYWPQLFLGFTFNMG 151 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence 589999999999999999999999999998888988777765 56777899985 7999988998777666654
Q ss_pred HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (400)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~ 342 (400)
+..|+.. .++.. +...++..+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+.
T Consensus 152 ~l~~~~a------~~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~ 223 (285)
T PRK12847 152 ILMAFAA------VQNQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL 223 (285)
T ss_pred HHHHHHH------HcCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence 4344322 12222 223344455666788899999999999999999999999999999998877666555544
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392 (400)
Q Consensus 343 ~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~ 392 (400)
..+ .+...+..+. +.++.++....++++...+|.+|++.|+++|+.
T Consensus 224 ~~~-~~~~~~~~~~---~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~ 269 (285)
T PRK12847 224 WLI-LGIISSLHNI---FYLAILAAAGIFYYQYKLLDFDNPANCMYAFKA 269 (285)
T ss_pred HHH-HHHHhcCcHH---HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 433 3333333221 122333344567788888898888877765443
No 18
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=5.2e-33 Score=270.70 Aligned_cols=259 Identities=18% Similarity=0.177 Sum_probs=192.9
Q ss_pred HHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--
Q 015791 109 LKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-- 183 (400)
Q Consensus 109 ~~~l~~y~~l~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-- 183 (400)
++++++|++++|++++.... ++.+.|.++|.+..+ ++. .+++++++.+++++++|++||++|+|+|+.++
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 35789999999988766554 446778888754332 222 14566788899999999999999999998755
Q ss_pred CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHH
Q 015791 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (400)
Q Consensus 184 p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~ 263 (400)
++||+++|++|++++..+++++.++++.+++.+|+..+.+++ ++.++.++|+. .||++.++++..+...|..+
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~ 149 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSV-AALALAWIYPF------MKRYTHLPQVVLGAAFGWGI 149 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence 489999999999999999999999999988888988777765 46667899974 79999889987777777655
Q ss_pred HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 015791 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (400)
Q Consensus 264 ~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~ 343 (400)
.+|+... ++.. +...+++.+...+|+...++.++++|+|+|+++|+||+|+++|+|++.++... ..+....
T Consensus 150 ~~g~~a~------~~~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~ 220 (282)
T PRK12848 150 PMAFAAV------QGSV--PLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLL-QLATLAL 220 (282)
T ss_pred HHHHHHH------hCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHH-HHHHHHH
Confidence 5564331 2222 22334445556678889999999999999999999999999999988776533 3333333
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHH
Q 015791 344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 391 (400)
Q Consensus 344 ~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~ 391 (400)
..+.+.....++ .+.++..+....+.++...+|.+|+++|.++|.
T Consensus 221 ~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 265 (282)
T PRK12848 221 LAWAGWLLGLGW---AYYWGLLVAAALFVYQQKLIRDREREACFKAFL 265 (282)
T ss_pred HHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 333344433333 344555667777888999999999888876654
No 19
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=2.1e-32 Score=267.27 Aligned_cols=266 Identities=24% Similarity=0.304 Sum_probs=205.3
Q ss_pred HHHHHHHHHhhhccchHHHHHH---HHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIV---GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP 184 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp 184 (400)
.+.+++.+.+++|+++++.+.+ +.+.|..++....++ +...++++++++++++++|++||++|+|+||+|+|
T Consensus 6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r 80 (289)
T COG0382 6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR 80 (289)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence 4556666666666666665544 445566665422221 22356788999999999999999999999999998
Q ss_pred --CCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791 185 --DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (400)
Q Consensus 185 --~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~ 262 (400)
+||+++|++|+++++.+.+++.++++.+++.+|+.++.+.+ ++.++.++|+. +||.+.+++++++..++..
T Consensus 81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~-~~~~l~~~Y~~------~Kr~~~~~~~~lg~~~~~~ 153 (289)
T COG0382 81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSL-AALVLALAYPF------LKRFTFLPQLVLGLAFGLG 153 (289)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876654 68888999953 8999999999999888877
Q ss_pred HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (400)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~ 342 (400)
+..|.... ++. .....+++.++..+|+++++++||++|+|+|++.|+||+|+.+|++++.+++.... ...+
T Consensus 154 ~~~g~~a~------~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~ 224 (289)
T COG0382 154 ALAGAAAV------GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASA 224 (289)
T ss_pred HHHHHHHH------hCc--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHH
Confidence 77775432 221 12234555677778899999999999999999999999999999999988877665 4444
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Q 015791 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKA 396 (400)
Q Consensus 343 ~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~i~~l 396 (400)
....++....... ..+.++..+.+..++++...+|.++++.|..+|..-..+
T Consensus 225 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (289)
T COG0382 225 LLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLL 276 (289)
T ss_pred HHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHH
Confidence 4444444333321 355667777788888999999998999998888765543
No 20
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.9e-32 Score=266.73 Aligned_cols=264 Identities=16% Similarity=0.155 Sum_probs=196.2
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhc------cc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 015791 110 KKLHALYVFTRPFAMIGTIVGITSIAILPL------QS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDK 180 (400)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~------~~---~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ 180 (400)
++++.|.+++|.++.+.++.-+..|.++|. ++ .+ ++ ..+++..++.+++++++|++||+.|+|+|+
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~ 76 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLG--GI---KTISLGGSAFFCARTVGIIVNQIIDCAIDK 76 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCC--CH---HHHHHHHHHHHHHHHHHHHHHhHHHhcccC
Confidence 468899999999888887777788999984 22 11 22 235677889999999999999999999999
Q ss_pred cCC--CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHH
Q 015791 181 VNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV 258 (400)
Q Consensus 181 ink--p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~ 258 (400)
+|+ ++||+|+|++|+++|+.+.+.+.+++++++..+|+.++.+++ +++++.+.||. +||++.++++..+..
T Consensus 77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~ 149 (300)
T PRK12876 77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLV 149 (300)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHH
Confidence 998 499999999999999999988888888888889998888775 46666789985 899999999877766
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchH--HHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHH
Q 015791 259 FGLVYQFSFFIHFQKYVLGRPVVITR--PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336 (400)
Q Consensus 259 ~g~~~~~G~~~~~~~~v~g~~~~~~~--~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l 336 (400)
.+..+..|+.. +.+++..+.. ..++......+|..++|++|+++|+|+|++.|+||+|+++|++++.++...+
T Consensus 150 ~~~~~l~~~~A-----v~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~ 224 (300)
T PRK12876 150 YYLAILMNFFA-----IIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASAN 224 (300)
T ss_pred HHHHHHHHHHH-----HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHH
Confidence 66655455432 2233221100 1122334445567799999999999999999999999999999887766666
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHH--HHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791 337 LFFAYGVSVIVGASSSFQLVKLVSIIGHS--TLAFLLWLRAQTVDLSNNASTYSFYMF 392 (400)
Q Consensus 337 ~~~ay~~~~~~g~~~~~~~~~~~~~~g~~--~l~~~l~~~~~~~d~~~~~~~~~f~~~ 392 (400)
..++.+..++.+.....++. .+..+.+ .....+.++.+.+|.++++.|.+||+.
T Consensus 225 ~~l~~~~l~~~g~~~~l~~~--~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~ 280 (300)
T PRK12876 225 LIASAIAYLLIGYFVSNKKI--FYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLG 280 (300)
T ss_pred HHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHh
Confidence 66666666666666665543 1222332 222334556577788888999888875
No 21
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.7e-32 Score=266.42 Aligned_cols=268 Identities=15% Similarity=0.241 Sum_probs=199.7
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-----C
Q 015791 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-----P 184 (400)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-----p 184 (400)
++++.|++.+||+++..++.++++|.++|.....++++.. +++++++.+++++++|.+|||+|+|.|+.++ |
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 4688999999999999999999999999975445677643 5677899999999999999999966555444 7
Q ss_pred CCCcccCcCCHHHHHHHHHHHHHHHHHHHH----HhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHH
Q 015791 185 DLPLASGDLSMGTGLAITLTLSLTSLAIAL----SLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 260 (400)
Q Consensus 185 ~RPl~sG~is~~~a~~~~~~l~~lgl~l~~----~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g 260 (400)
+||+++|++|+++++....++..+++.++. ..+++.+.++ +++++.++.|| .||+++|++++ |++.++..+|
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt--~~P~~lky~gl-Ge~~v~~~~g 154 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYM--GPPFFLKYRWL-GEHLVFYAWS 154 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHc--CCCcccCCCCc-hHHHHHHHHH
Confidence 899999999999999988887666654432 3465555555 46888999999 58999998875 9999988888
Q ss_pred HHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHH
Q 015791 261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (400)
Q Consensus 261 ~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~a 340 (400)
..+++|.+... ++.. +...+.....+.+++....+.||+||+|+|++.|+||+|+++|+|++ ++...+...+
T Consensus 155 ~~~vlg~~~~~-----~~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~ 226 (296)
T PRK05951 155 HMLVMGLIYVW-----LGNL--SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP 226 (296)
T ss_pred HHHHHHHHHHH-----hCcc--cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence 88777765431 2222 22233445566667777889999999999999999999999999999 6666666777
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791 341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392 (400)
Q Consensus 341 y~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~ 392 (400)
|+..+........+++.+++.+++......+.++.+..|.++.+.|..+++.
T Consensus 227 ~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 227 YVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML 278 (296)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence 7766554444434444455556655555555566666676666666665554
No 22
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=3.3e-32 Score=269.68 Aligned_cols=256 Identities=18% Similarity=0.281 Sum_probs=179.9
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccC-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSF-ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL 186 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~-~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R 186 (400)
+.+++++|++++||++++ ..++.+.|.++|.+.. +......+ .+...++...+...++|++|||+|+|+|++|+|.|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 567899999999999888 5666777777875321 22221110 12223344455667889999999999999999999
Q ss_pred CcccCcCCHHHHHHHHHHHHHHHHHHHHHhch-------hHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHH
Q 015791 187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQS-------PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (400)
Q Consensus 187 Pl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~-------~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~ 259 (400)
|+++|++|+++++.+.+++.++++.+++.++. +.+++..+++++++++||. ||+++||.++.++..++..+
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~ 163 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY 163 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence 99999999999999999999888877776542 2222222357788999994 89999999988888777666
Q ss_pred HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHH
Q 015791 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (400)
Q Consensus 260 g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ 339 (400)
+....++.+. ..+. .+...++..++..+++.+++++||++|+|+|++.|+||+|+++|++++.+++..+..+
T Consensus 164 ~~~~~~~~~a-----~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~ 235 (331)
T PRK12392 164 GFITFLSANA-----LFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235 (331)
T ss_pred HHHHHHHHHH-----HhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence 6544433221 2232 2223344455666788999999999999999999999999999999998887666545
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Q 015791 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV 378 (400)
Q Consensus 340 ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~ 378 (400)
..+..+..+.....++. +....++++..+++|.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~l~ 271 (331)
T PRK12392 236 VFAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQLY 271 (331)
T ss_pred HHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHHH
Confidence 55555555555555433 2233334444555565543
No 23
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=8.3e-32 Score=265.60 Aligned_cols=267 Identities=16% Similarity=0.146 Sum_probs=197.3
Q ss_pred hhHHHHHHHHHHHhhh---ccchHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 015791 104 FWDVLLKKLHALYVFT---RPFAMIGTIVGITSIAILPLQSF---ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 177 (400)
Q Consensus 104 ~~~~~~~~l~~y~~l~---Rp~~~~~~~l~~l~g~~lA~~~~---~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e 177 (400)
+.+.++.++++|++++ ||+......++++.|.++|.... ...++. .+++++++.+++++++|++|||+|+|
T Consensus 22 ~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~ 98 (314)
T PRK12878 22 VDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRD 98 (314)
T ss_pred hhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344778999999999 88888888899999999985431 123332 24677889999999999999999999
Q ss_pred ccccCC--CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHH
Q 015791 178 IDKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCM 255 (400)
Q Consensus 178 ~D~ink--p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i 255 (400)
+|+.++ ++||+++|++|+++++.+..++.++|+.+.+..|++.+.+++ +++++.+.|+. .||++.++++..
T Consensus 99 iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~ 171 (314)
T PRK12878 99 IDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGI-ASLAIVAAYPF------MKRITWWPQFFL 171 (314)
T ss_pred cccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhcCCcchHHH
Confidence 998765 489999999999999999999999999998888987777765 56777999985 799888888766
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHH
Q 015791 256 VTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVY 335 (400)
Q Consensus 256 ~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~ 335 (400)
+...++...+|++.. .| ...+ ..+.+.+...+|+...+.+++++|+|+|+++|+||+||++|++++.++...
T Consensus 172 Gl~~~~~~l~g~~a~-----~g-~~~~--~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~ 243 (314)
T PRK12878 172 GLAFSWGALMGWAAH-----FG-SLSL--AAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLF 243 (314)
T ss_pred HHHHHHHHHHHHHHH-----hC-CCch--HHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHH
Confidence 655555444554321 23 2222 223334455667888999999999999999999999999999999887644
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791 336 ALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392 (400)
Q Consensus 336 l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~ 392 (400)
..... ....+.+.....++.++ ++.......+.++..++|.++++.|+++|+.
T Consensus 244 ~~~~~-~~~~l~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~ 296 (314)
T PRK12878 244 YGLAV-LLMGLAFWLAGVPLLAL---LGLLAAAAHLAWQIARLDIDDPDQCLRLFKS 296 (314)
T ss_pred HHHHH-HHHHHHHHHhcCcHHHH---HHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence 43333 33333333334444332 3333444557788888888888888876654
No 24
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=5.4e-32 Score=266.36 Aligned_cols=225 Identities=21% Similarity=0.301 Sum_probs=173.5
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCC
Q 015791 107 VLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKY---FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK 183 (400)
Q Consensus 107 ~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~---l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink 183 (400)
...+++++|++++||+++..++++++.|.+.+. .+++.. +..++..+++..++++++|.+|||+|+|+|+.|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~ 86 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE 86 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence 356778999999999999999999999988642 233321 1113445678899999999999999999999999
Q ss_pred CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhc-------hhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHH
Q 015791 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ-------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV 256 (400)
Q Consensus 184 p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg-------~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~ 256 (400)
|+||+++|++|+++++.+++++.++++.+++.+. ++.+.+++ ++++++++||. ||+++||++++|++.++
T Consensus 87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~-~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL-FGSFIAFIYSA--PPLKLKQNGWLGNFALG 163 (306)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHHHHcC--ChhhhhhcccHHHHHHH
Confidence 9999999999999999999888888877766542 34455554 57788999994 89999999988998877
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHH
Q 015791 257 TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336 (400)
Q Consensus 257 ~~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l 336 (400)
..++..+..+.+. +.|. . +...++..+..++++.++++.||++|+|+|++.|+||+||++|+|++.+++..+
T Consensus 164 ~~~~~~~~~~~~a-----~~g~-~--~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l 235 (306)
T TIGR02056 164 ASYIALPWWAGHA-----LFGE-L--NPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGA 235 (306)
T ss_pred HHHHHHHHHHHHH-----HhCC-C--cHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHH
Confidence 6666544443221 1232 2 223344455666788899999999999999999999999999999999988877
Q ss_pred HHHHHHHHHH
Q 015791 337 LFFAYGVSVI 346 (400)
Q Consensus 337 ~~~ay~~~~~ 346 (400)
+..++...+.
T Consensus 236 ~~~~~~~~~~ 245 (306)
T TIGR02056 236 IDIFQGLIAA 245 (306)
T ss_pred HHHHHHHHHH
Confidence 7666655443
No 25
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.2e-32 Score=263.09 Aligned_cols=261 Identities=15% Similarity=0.113 Sum_probs=194.0
Q ss_pred HHHHHHHhhhccchHHHHHH---HHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--C
Q 015791 110 KKLHALYVFTRPFAMIGTIV---GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--P 184 (400)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p 184 (400)
+++++|++++||+.+.++.+ +.+.|.+++....+ ++. .+++++++..++++++|++||+.|+|+|+.|+ +
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 79 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK 79 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 46889999999998877755 34567666543222 222 24577899999999999999999999999876 4
Q ss_pred CCCcccCcCCHHHHHHHHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHH
Q 015791 185 DLPLASGDLSMGTGLAITLTLSLTSLAIALSL----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 260 (400)
Q Consensus 185 ~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~l----g~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g 260 (400)
+||+++|++|+++|+.+++++.++++.+.+.+ |+.++.+++ ++++....||. +||++.+++++.+...+
T Consensus 80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a 152 (294)
T PRK12873 80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQAILALCWG 152 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence 99999999999999999999999998887665 556666654 45667889985 79999999987776666
Q ss_pred HHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHH
Q 015791 261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (400)
Q Consensus 261 ~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~a 340 (400)
..+.+|+.+ +.|. ..+....+++.+.+.+|+.+.+++++++|+|+|+++|++|+|+++|++.. .....+..+.
T Consensus 153 ~~~l~gw~A-----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-~~~~~~~~~~ 225 (294)
T PRK12873 153 FAVLIPWAA-----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-KTVQICYFLT 225 (294)
T ss_pred hHHHHHHHH-----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-HHHHHHHHHH
Confidence 555555422 2232 22222333434566778999999999999999999999999999997554 4555666666
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC--hHHHHHHHHH
Q 015791 341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN--NASTYSFYMF 392 (400)
Q Consensus 341 y~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~--~~~~~~f~~~ 392 (400)
.++...++.....++ ++.++.++.+..+.+|++.+|.++ +++|-++|+.
T Consensus 226 ~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~ 276 (294)
T PRK12873 226 SIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSN 276 (294)
T ss_pred HHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHh
Confidence 665666677666654 445566666778889999999887 4888665543
No 26
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=2.1e-31 Score=259.31 Aligned_cols=258 Identities=17% Similarity=0.184 Sum_probs=186.5
Q ss_pred HHHHhhhccchHHHH---HHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCC
Q 015791 113 HALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLP 187 (400)
Q Consensus 113 ~~y~~l~Rp~~~~~~---~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RP 187 (400)
++|.|++|++++.+. .++.+.|..+|....+..++.. +++.+++.+++++++|++|||+|+|+|+.|+ |+||
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence 568888888776555 4556778888743111112221 4566788899999999999999999998665 4899
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHH
Q 015791 188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF 267 (400)
Q Consensus 188 l~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~ 267 (400)
+++|++|+++++.++.++.++|+.+++..|+.+..+++ +++++.+.||. .||++.++++..+...+..+.+|+
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~ 151 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGV-ASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW 151 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999889988877765 57777999985 899999999877766666555664
Q ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 015791 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (400)
Q Consensus 268 ~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~ 347 (400)
++. .| .. +...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++.+.. .+..++.....+.
T Consensus 152 ~a~-----~g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~ 222 (281)
T TIGR01474 152 AAV-----TG-DL--STAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLG-GLYALMILLLALA 222 (281)
T ss_pred HHH-----cC-CC--cHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHH-HHHHHHHHHHHHH
Confidence 331 23 22 222333345556678899999999999999999999999999998875543 3333333333333
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791 348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392 (400)
Q Consensus 348 g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~ 392 (400)
+.....++ .+.++..+.+..+.++...+|.+|++.|+++|+.
T Consensus 223 ~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 264 (281)
T TIGR01474 223 GLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKA 264 (281)
T ss_pred HHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44333333 3344555667777788888888888877765543
No 27
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=8.5e-31 Score=254.78 Aligned_cols=265 Identities=13% Similarity=0.130 Sum_probs=184.0
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCCc
Q 015791 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL 188 (400)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl 188 (400)
++++|++++||++.....++++.|.++|.+. ..++.. +++.+++.+++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 4689999999999999999999999998543 233322 4567788999999999999999999999987 69999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHH
Q 015791 189 ASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF 267 (400)
Q Consensus 189 ~sG~is~~~a~~~~~~l~~lgl~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~ 267 (400)
++|++|+++|..+++++.++|+.++.. +|+.+.....+..++..+.||. ++||++.. +..+++..|...++|.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g 149 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG 149 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877 7876543333345567889985 38999985 6667766666655554
Q ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 015791 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (400)
Q Consensus 268 ~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~ 347 (400)
+... .+.. +...++..+.+.+|+.+.....+++|+|+|+++|+||+|+++|+|++.+....+..+........
T Consensus 150 ~~a~-----~g~~--~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~ 222 (279)
T PRK12869 150 YASG-----TGSL--DLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLL 222 (279)
T ss_pred HHHH-----hCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 2222 22233444455566666666667899999999999999999999999876655544333333322
Q ss_pred HHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHccCCChHHHH-HHHHHHHHHh
Q 015791 348 GASSSFQLVKLVSIIGHS-TLAFLLWLRAQTVDLSNNASTY-SFYMFIWKAI 397 (400)
Q Consensus 348 g~~~~~~~~~~~~~~g~~-~l~~~l~~~~~~~d~~~~~~~~-~f~~~i~~l~ 397 (400)
+. ...++ .+.++.. ..+..+..+.+.++.++++.|+ .|...+|.+.
T Consensus 223 ~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~ 270 (279)
T PRK12869 223 YL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA 270 (279)
T ss_pred HH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 22 23333 3333332 2333444555666655555554 4555566553
No 28
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=5.8e-31 Score=255.63 Aligned_cols=205 Identities=25% Similarity=0.333 Sum_probs=162.0
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCccc
Q 015791 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS 190 (400)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s 190 (400)
.+++|++++||+++..+.++.+.|.+++.+..++ +. ..++++++.++.++++|++||++|+|+|++|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3678999999999999999899999888543221 21 134566788899999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 015791 191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (400)
Q Consensus 191 G~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~ 270 (400)
|++++++++.++.++.++|+.+++.+|++++.+++ ++.+++++|+. ++|+++.++|+.++...|..+..|...
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a- 149 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA- 149 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999889988877665 46678999996 478988889999988887665555432
Q ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHH
Q 015791 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336 (400)
Q Consensus 271 ~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l 336 (400)
+ +. ..+ ..+. ..+..++..++++.||++|+|+|+++|+||+|+++|+|++.++...+
T Consensus 150 ----~-~~-~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 150 ----V-GR-IGL--AGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred ----h-cc-ccH--HHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 1 21 111 1111 12233445678899999999999999999999999999998865444
No 29
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=1.4e-30 Score=254.75 Aligned_cols=232 Identities=18% Similarity=0.186 Sum_probs=181.5
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccc--cCCCCC
Q 015791 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDK--VNKPDL 186 (400)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~--e~D~--inkp~R 186 (400)
.+++|++++||+++..+++++++|.++|... ..+++.. +++++++.++++.++|.+|||+|+ ++|+ .++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3678999999999999999999999998532 3455532 567788999999999999999999 4675 456899
Q ss_pred CcccCcCCHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791 187 PLASGDLSMGTGLAITLTLSLTSLAIALS----LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (400)
Q Consensus 187 Pl~sG~is~~~a~~~~~~l~~lgl~l~~~----lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~ 262 (400)
|+++|++|+++++.++.++.++++.++.. .+++.+.+++ ++++++++|| .||.|+|++++ ||+.++..+|..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~ 153 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGL-LCIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLV 153 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHH
Confidence 99999999999998887777766555443 4655555554 5777889999 48888888875 999888888877
Q ss_pred HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (400)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~ 342 (400)
++.|.+.. ..+. .+...++..++..+++.++++.||++|+|+|++.|+||+|+++|+|++.+++..+..++|+
T Consensus 154 ~~~~~~~~-----~~~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 154 IVLGTYYL-----QAGT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL 226 (293)
T ss_pred HHHHHHHH-----hcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence 66654432 1121 2334455567777788899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhhhHH
Q 015791 343 VSVIVGASSSFQLVK 357 (400)
Q Consensus 343 ~~~~~g~~~~~~~~~ 357 (400)
..+........+++.
T Consensus 227 ~~~~~~~~~~~~~~~ 241 (293)
T PRK06080 227 CIVLLALLGLASPWG 241 (293)
T ss_pred HHHHHHHHhhhhHHH
Confidence 777665554455543
No 30
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.7e-30 Score=254.61 Aligned_cols=268 Identities=15% Similarity=0.108 Sum_probs=186.3
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD 185 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~ 185 (400)
.++++++|++++||++......+++.|.++|.+. ..++. .+++++++.+++++++|++|||+|+|+|++|+ |+
T Consensus 6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~ 80 (296)
T PRK04375 6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKN 80 (296)
T ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCC
Confidence 3567999999999999999999999999998543 23432 24567889999999999999999999999987 69
Q ss_pred CCcccCcCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH-H
Q 015791 186 LPLASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV-Y 263 (400)
Q Consensus 186 RPl~sG~is~~~a~~~~~~l~~lgl~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~-~ 263 (400)
||+++|++|++++..+++++.++|+.+++. .|+.+..++++..+.+.+.||. ++||++. ++..++...+.. +
T Consensus 81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~ 154 (296)
T PRK04375 81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPP 154 (296)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHH
Confidence 999999999999999999999999888754 5766665554322335678985 4899996 677676665533 3
Q ss_pred HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 015791 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (400)
Q Consensus 264 ~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~ 343 (400)
.+|++. ..+.. +...+++.+...+|....+..++++|+|+|+++|+||+|+++|++++.++......+....
T Consensus 155 l~g~~a------~~g~~--~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~ 226 (296)
T PRK04375 155 LIGWAA------VTGSL--SWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAV 226 (296)
T ss_pred HHHHHH------hCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHH
Confidence 344332 12222 2223444556667788888888999999999999999999999998887655443333322
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHH-HHHHHHHHH
Q 015791 344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFYMFIWKA 396 (400)
Q Consensus 344 ~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~-~f~~~i~~l 396 (400)
.++.......++.+.+ .+....+.++.++.+..+.+|++.|+ .|+...|.+
T Consensus 227 ~~~~~~~~~~~~~y~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~ 278 (296)
T PRK04375 227 SLLPVLLGMAGLLYLV--VALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL 278 (296)
T ss_pred HHHHHHHhccCHHHHH--HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 2222222223332221 12333344555667777777766664 444445443
No 31
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.98 E-value=2.9e-30 Score=249.90 Aligned_cols=259 Identities=20% Similarity=0.192 Sum_probs=184.9
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCCh--HHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTP--KYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPD 185 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~--~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~ 185 (400)
....++.+++++||.+++.++.++++|...+.. .+++ .. +++++...+..+.+.|++|||+|+|+|++|+|+
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence 456678899999999999999999999977743 2343 32 456677888999999999999999999999999
Q ss_pred CCcccCcCCHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHH
Q 015791 186 LPLASGDLSMGTGLAITLTLSLT----SLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL 261 (400)
Q Consensus 186 RPl~sG~is~~~a~~~~~~l~~l----gl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~ 261 (400)
||+++|++|+++++.+..++.++ ++.+++..|+..+.+.+ ++.+++++|| .||+|+|++|++++++.. ..|.
T Consensus 82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~~l~~~YS--~pPlRlK~rp~l~~l~~~-~~g~ 157 (292)
T PRK13595 82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYAALFVGYS--LPPLRFKARPFLDGLSNA-AYAL 157 (292)
T ss_pred CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHc--cCccchhcCcchhHHHHH-HHHH
Confidence 99999999999998865544433 55667778877766654 6778999999 599999999999988753 3343
Q ss_pred HHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHH
Q 015791 262 VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY 341 (400)
Q Consensus 262 ~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay 341 (400)
++++.. .+.|... .+.. .....+|..+++++++++|+|+||+.|+||+|+++|+|++.+++..+.+++-
T Consensus 158 --p~~~~~----~~~g~~~---~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~ 226 (292)
T PRK13595 158 --PLALPA----LALGAPV---PWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAG 226 (292)
T ss_pred --HHHHHH----HHcCCcc---hHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHH
Confidence 222211 1234321 1111 2344567789999999999999999999999999999999998877765544
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHh
Q 015791 342 GVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAI 397 (400)
Q Consensus 342 ~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~i~~l~ 397 (400)
+...... .+.... .. +... ....+-+ .|.+..++-+.|-.|+|-.+
T Consensus 227 ~~~~~~~--~~~~~~--~~-~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 272 (292)
T PRK13595 227 ALLWPVS--RLTALA--LW-LICG----GMALALW-RRPTPETAHRLYPLSIVTPW 272 (292)
T ss_pred HHHHHhc--chHHHH--HH-HHHH----HHHHHHh-cCCCHHHHhccchHHHHHhH
Confidence 3332211 111111 11 1111 1112222 67777888889999998654
No 32
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=9.7e-30 Score=251.22 Aligned_cols=238 Identities=12% Similarity=0.087 Sum_probs=182.9
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC----CCCC
Q 015791 112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK----PDLP 187 (400)
Q Consensus 112 l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink----p~RP 187 (400)
++.|++++||++...++++++.|.++|.....++++.. +++++++++++++++|.+|||+|.+.|..++ +.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 67899999999999999999999999965444677643 5677889999999999999999998766554 6899
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHH----HHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHH
Q 015791 188 LASGDLSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (400)
Q Consensus 188 l~sG~is~~~a~~~~~~l~~lgl~----l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~ 263 (400)
+++|.+++++++..+..+.+++.+ +.+..|+..+.+++ ++++.+++|| .||+++||++ +||+.++..+|+.+
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl-~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~ 155 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGL-ICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGI 155 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHH
Confidence 999999999999888877766655 55667876666664 6888999999 5899999999 59999988889877
Q ss_pred HHHHHHHHHHHhhcC--------Cc--cchH----HHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhH
Q 015791 264 QFSFFIHFQKYVLGR--------PV--VITR----PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENV 329 (400)
Q Consensus 264 ~~G~~~~~~~~v~g~--------~~--~~~~----~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a 329 (400)
..|.+.. ++..... .. .++. ..++..+.+.+.+..+++.||++|+|+|+++|+||+|+++|+|++
T Consensus 156 v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a 234 (317)
T PRK13387 156 FLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG 234 (317)
T ss_pred HHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence 7765543 2110000 00 0000 011244555566777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 015791 330 LRLCVYALFFAYGVSVIVGASSSFQLVK 357 (400)
Q Consensus 330 ~~l~~~l~~~ay~~~~~~g~~~~~~~~~ 357 (400)
.++..++..++|+..+........+++.
T Consensus 235 ~~l~~~l~~~a~l~~~~~v~~g~lp~~~ 262 (317)
T PRK13387 235 VVLFAILFYASYLAIAVIVLMGYISPWA 262 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999998776554444345443
No 33
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.97 E-value=9.3e-30 Score=247.58 Aligned_cols=264 Identities=17% Similarity=0.140 Sum_probs=181.7
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCCccc
Q 015791 113 HALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLAS 190 (400)
Q Consensus 113 ~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl~s 190 (400)
++|++++||+++..+.++++.|.++|.+.. +.++.. +++++++.+++++++|++|||+|+|+|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 368999999999999999999999985432 234322 4567789999999999999999999999876 6999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHH-HHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHH
Q 015791 191 GDLSMGTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFL-LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (400)
Q Consensus 191 G~is~~~a~~~~~~l~~lgl~l-~~~lg~~~l~~~l~~~~~-l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~ 268 (400)
|++|++++..+++++.++|+.+ ....|+....++++ +.+ .+++||.. +||++.. +..++...|...+++.+
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~-~~~~~~~~Yt~~-----lKr~~~~-~~~v~~~~g~~~~l~g~ 149 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLF-GIFFYVIVYTIW-----LKRRTPQ-NTVIGGFAGAVPPLIGW 149 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhhcChh-----hccCCch-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999884 44578776666543 443 47899942 7999886 55566666655554433
Q ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 015791 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (400)
Q Consensus 269 ~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g 348 (400)
.. .++...+ ..+++...+.+|+.......+++|+|+|+++|+||+|+++|+|++.++.............+.+
T Consensus 150 ~a-----~~g~~~~--~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (280)
T TIGR01473 150 AA-----VTGSISL--GAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA 222 (280)
T ss_pred HH-----hcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1222222 2333344555666666666678999999999999999999999887765544433333333333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCC-ChHHHH-HHHHHHHHH
Q 015791 349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLS-NNASTY-SFYMFIWKA 396 (400)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~-~~~~~~-~f~~~i~~l 396 (400)
.....++.+. .++..+.+.++.++.+..|.+ |++.++ .|+...+.+
T Consensus 223 ~~~~~~~~y~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~ 270 (280)
T TIGR01473 223 FLGGTGWLYL--IVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYL 270 (280)
T ss_pred HHhcccHHHH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3333343322 133444455666777777766 554444 455445544
No 34
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=1.2e-28 Score=242.29 Aligned_cols=208 Identities=13% Similarity=0.154 Sum_probs=159.1
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD 185 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~ 185 (400)
.+.++++|++++||+.+....++++.|.++|... +.++.. ++.++++..+.++++|++|||+|+|+|+.++ ++
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~ 83 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN 83 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence 4567899999999999999999999999998433 234432 4456789999999999999999999998754 59
Q ss_pred CCcccCcCCHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHH
Q 015791 186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ 264 (400)
Q Consensus 186 RPl~sG~is~~~a~~~~~~l~~lgl~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~ 264 (400)
||+++|++|+++|+.+++++.++|+.+. +..|+....++.+..+++.++||. ++||++..++++.+...+..+.
T Consensus 84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l 158 (306)
T PRK13362 84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPV 158 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHH
Confidence 9999999999999999999999998765 446776655543333446789984 3899999888755544444444
Q ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHH
Q 015791 265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC 333 (400)
Q Consensus 265 ~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~ 333 (400)
+|+.. .++.. +...+++...+.+|+...+...+++|+|||+++|+||+|+++|+|++.+..
T Consensus 159 ~G~~a------~~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~ 219 (306)
T PRK13362 159 VGYCA------VTGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI 219 (306)
T ss_pred HHHHH------HcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence 55432 13322 223444566667788888888899999999999999999999999887643
No 35
>PLN02922 prenyltransferase
Probab=99.97 E-value=1.1e-27 Score=236.20 Aligned_cols=237 Identities=18% Similarity=0.203 Sum_probs=178.6
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCCC
Q 015791 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLP 187 (400)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~inkp~RP 187 (400)
++++.|++.+||+++..+++++++|.++|......+++.. ++++++++++++.++|.+|||+|.+ .|+.++..+.
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 5678899999999999999999999999975445677653 5678899999999999999999986 5775432222
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHH---H--hchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791 188 LASGDLSMGTGLAITLTLSLTSLAIAL---S--LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (400)
Q Consensus 188 l~sG~is~~~a~~~~~~l~~lgl~l~~---~--lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~ 262 (400)
-..| ++++.+..++++.++++...+ . .|++.+.++ +++++.+++|| .||+++|++++ |++.++..+|..
T Consensus 90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l 163 (315)
T PLN02922 90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPL 163 (315)
T ss_pred Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHHH
Confidence 2234 899988877766665543221 2 245555555 46889999999 58999999997 999998888988
Q ss_pred HHHHHHHHHHHHhhcC-Cc---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHH
Q 015791 263 YQFSFFIHFQKYVLGR-PV---VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF 338 (400)
Q Consensus 263 ~~~G~~~~~~~~v~g~-~~---~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~ 338 (400)
++.|.|.. ++...+. .. ..+...++..+.+++++.++.+.||+||+|+|++.|+||+||++|+|++.++..++..
T Consensus 164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~ 242 (315)
T PLN02922 164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL 242 (315)
T ss_pred HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence 77776653 2211111 00 1233345567777788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhH
Q 015791 339 FAYGVSVIVGASSSFQLV 356 (400)
Q Consensus 339 ~ay~~~~~~g~~~~~~~~ 356 (400)
.+|+..+........+++
T Consensus 243 ~~y~~~i~~v~~~~~p~~ 260 (315)
T PLN02922 243 LLYSLLAALGLLKALPLP 260 (315)
T ss_pred HHHHHHHHHHHHhhhhHH
Confidence 999877766555444543
No 36
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=6e-28 Score=236.78 Aligned_cols=234 Identities=18% Similarity=0.143 Sum_probs=181.9
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCC
Q 015791 109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDL 186 (400)
Q Consensus 109 ~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~inkp~R 186 (400)
.++++.|++.+||+++..+++++++|.++|.....++++.. +++++++.+++++++|.+|||+|++ .|+. ++.
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~- 83 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH- 83 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence 45688899999999999999999999999965445677643 5678899999999999999999987 6773 222
Q ss_pred CcccCcCCHHHHHHHHHHHHHHHHH----HHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791 187 PLASGDLSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (400)
Q Consensus 187 Pl~sG~is~~~a~~~~~~l~~lgl~----l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~ 262 (400)
...++..++++....+.++.++++. +.+..|++.+.+++ ++++.+++|| .||+++|++++ |++.++..+|++
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~-~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l 159 (304)
T PRK07419 84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVL-LCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPL 159 (304)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH-HHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHH
Confidence 2345555788888777766655544 44455765555554 6888999999 58999999996 999999999988
Q ss_pred HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (400)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~ 342 (400)
.+.|.+.. + .+. ++...+...+.+++.+..+...||+||+|+|++.|+||+||++|+|++.+++..+...+|+
T Consensus 160 ~v~g~~yv-~----t~~--~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~ 232 (304)
T PRK07419 160 AVAAALYS-Q----TPS--WSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA 232 (304)
T ss_pred HHHHHHHH-h----cCC--CCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence 88776653 2 222 2333455566677778888999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhhhHHH
Q 015791 343 VSVIVGASSSFQLVKL 358 (400)
Q Consensus 343 ~~~~~g~~~~~~~~~~ 358 (400)
..+........+|+.+
T Consensus 233 ~~i~~v~~g~~p~~~L 248 (304)
T PRK07419 233 LELLPVLLGFWPWTTL 248 (304)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 8776555444555433
No 37
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.97 E-value=5.6e-28 Score=235.19 Aligned_cols=224 Identities=15% Similarity=0.088 Sum_probs=174.1
Q ss_pred ccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccC--CCCCCcccCcCCH
Q 015791 120 RPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVN--KPDLPLASGDLSM 195 (400)
Q Consensus 120 Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~in--kp~RPl~sG~is~ 195 (400)
||+++..+++++++|.++|.... .+++.. +++++++++++++++|.+|||+|.+ .|+.+ +|.|++++|.+++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999999996543 677643 5678899999999999999999985 36543 4789999999999
Q ss_pred HHHHHHHHHHHHHHHHH----HHHhch-----hH-HHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHH
Q 015791 196 GTGLAITLTLSLTSLAI----ALSLQS-----PP-LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF 265 (400)
Q Consensus 196 ~~a~~~~~~l~~lgl~l----~~~lg~-----~~-l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~ 265 (400)
+++...++++++++..+ .+..++ ++ +.++ +++++.+++|| .||+++|++++ ||+.++..+|.+.+.
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg-~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~ 152 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG-ALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVL 152 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH-HHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHH
Confidence 99998887777655444 344454 13 3444 46888899999 58999999996 999999999988887
Q ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 015791 266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 345 (400)
Q Consensus 266 G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~ 345 (400)
|.+.. + .+.. +...++..+..++++.+++..||+||+|+|+++|+||+||++|+|+++++...++..+|+..+
T Consensus 153 g~~yv-q----~~~~--~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~ 225 (284)
T TIGR00751 153 GTQYL-Q----AHRV--DWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF 225 (284)
T ss_pred HHHHH-h----cCCC--CHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence 76553 2 2222 223344455566778888999999999999999999999999999999999999889988766
Q ss_pred HHHHhhhhhhHHH
Q 015791 346 IVGASSSFQLVKL 358 (400)
Q Consensus 346 ~~g~~~~~~~~~~ 358 (400)
+.......+++.+
T Consensus 226 ~~~~~~~~p~~~l 238 (284)
T TIGR00751 226 VFMLATPISWWCV 238 (284)
T ss_pred HHHHHhhchHHHH
Confidence 5544444555433
No 38
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=9.3e-28 Score=235.05 Aligned_cols=257 Identities=16% Similarity=0.153 Sum_probs=169.7
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC-------
Q 015791 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN------- 182 (400)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in------- 182 (400)
+++++|++++||+++.....+++.|.++|......+++.. +++.++++.++..++|++|||+|+|+|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4688999999999998877777788888742112334432 232344455555778999999999999865
Q ss_pred --C--CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhch----hHHHHHHHHHHHHHhhccCCccccccccC---CCcc
Q 015791 183 --K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQS----PPLIFGLIVWFLLGTAYSVDLPFLRWKTK---PFLA 251 (400)
Q Consensus 183 --k--p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~----~~l~~~l~~~~~l~~~Ys~~~pplrlKr~---~~~g 251 (400)
| ++||+++|++|+++++.+.+++.++|+.++..++. ..+.++ +.+.++++.|+. .||. |. +
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p~-~ 151 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYPV-A 151 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------ccccccccH-H
Confidence 3 48999999999999999999999998888766543 222222 345677788884 2332 31 2
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHH
Q 015791 252 GMCMV-TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 330 (400)
Q Consensus 252 ~l~i~-~~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~ 330 (400)
.+ ++ ...+. ++++.+. ..|. . +...+...++..+|+.+++++||++|+|||++.|+||+|+++|++++.
T Consensus 152 ~l-~G~~~~~~-~~~~g~~-----~~g~-~--~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~ 221 (297)
T PRK12871 152 QL-LGRTDFTL-FPAAGYL-----CYGQ-P--DMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTM 221 (297)
T ss_pred HH-HHHHHHHH-HHHHHHH-----HhCC-C--cHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHH
Confidence 22 22 22233 2222222 1232 1 223344456667789999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHH
Q 015791 331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 391 (400)
Q Consensus 331 ~l~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~ 391 (400)
++...+..+..+..+ +.....++ ..+....++.+..+.+|.+..+.+++++|-+-|.
T Consensus 222 ~~i~~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 278 (297)
T PRK12871 222 YWVTGFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILP 278 (297)
T ss_pred HHHHHHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 655444434333222 22233332 2223333455667778888889999999966554
No 39
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.96 E-value=1.5e-26 Score=225.39 Aligned_cols=229 Identities=14% Similarity=0.134 Sum_probs=173.3
Q ss_pred HHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--cccCCCCCCcccCc
Q 015791 115 LYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI--DKVNKPDLPLASGD 192 (400)
Q Consensus 115 y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~--D~inkp~RPl~sG~ 192 (400)
|++.+||+++..+++++++|.++|....+.+++.. +++++++++++++++|.+|||+|.+. |+.+. .+ ..++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~~-~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-HS-IVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-CC-ccccc
Confidence 67899999999999999999999975445677653 56788999999999999999999864 77432 11 22233
Q ss_pred CCHHHHHHHHHHHHHHHHH----HHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHH
Q 015791 193 LSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (400)
Q Consensus 193 is~~~a~~~~~~l~~lgl~----l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~ 268 (400)
.++++......++..++.. +.+..|++.+.+++ ++++.+++|| .||+++|++++ |++.++..+|.+.+.|.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~-~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~ 152 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVG-LCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAAL 152 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence 4567777666666555444 44445654445554 6888999999 58999999997 999999999988887765
Q ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 015791 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (400)
Q Consensus 269 ~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g 348 (400)
.. + .+. ++...+...+.+++.+.++.+.||+||+|+|++.|+||+||++|+|++.++...+...+|+..+...
T Consensus 153 yv-q----t~~--~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v 225 (285)
T TIGR02235 153 YA-Q----SQS--FSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAV 225 (285)
T ss_pred HH-h----CCc--CcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHH
Confidence 53 2 222 2334455566777778888999999999999999999999999999999999999999998776655
Q ss_pred HhhhhhhHHHH
Q 015791 349 ASSSFQLVKLV 359 (400)
Q Consensus 349 ~~~~~~~~~~~ 359 (400)
.....+|+.++
T Consensus 226 ~~~~~p~~~ll 236 (285)
T TIGR02235 226 IGGFLPWTTLL 236 (285)
T ss_pred HHhhhHHHHHH
Confidence 54445554433
No 40
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1e-26 Score=225.57 Aligned_cols=218 Identities=21% Similarity=0.192 Sum_probs=154.0
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccC
Q 015791 112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG 191 (400)
Q Consensus 112 l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG 191 (400)
++.+++++||.+|+.+.+++..|.++| ++.+ ++.+ ++.++.-....+.+.|++|||+|+|.|+.|++.+.. .|
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~--~~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g 73 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEI--DWLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG 73 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHH-CCCC--ChHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence 367899999999999999998899999 3322 3321 222233344555555777999999999999764332 58
Q ss_pred cCCHHHHHHHHHHHH----H-HHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHH
Q 015791 192 DLSMGTGLAITLTLS----L-TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS 266 (400)
Q Consensus 192 ~is~~~a~~~~~~l~----~-lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G 266 (400)
.+++++......... + .++.+....+++.+.++ .++++.++.|| .||.|+|++++.++++.+..+.....+|
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G 150 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYG 150 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHH
Confidence 899998744333222 2 23333333355555544 46888999999 4899999999987765544433224444
Q ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 015791 267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 346 (400)
Q Consensus 267 ~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~ 346 (400)
.+. + ++.. +...++....+.+++.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.+.
T Consensus 151 ~~~-----~-~~~~--~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~ 222 (282)
T PRK13105 151 LVL-----A-GAPF--TAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA 222 (282)
T ss_pred HHH-----h-hccc--cHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 332 1 3322 2334555667777899999999999999999999999999999999999999998888877664
Q ss_pred H
Q 015791 347 V 347 (400)
Q Consensus 347 ~ 347 (400)
.
T Consensus 223 ~ 223 (282)
T PRK13105 223 L 223 (282)
T ss_pred H
Confidence 3
No 41
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.96 E-value=2.3e-26 Score=221.75 Aligned_cols=272 Identities=17% Similarity=0.176 Sum_probs=194.5
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccc----CC
Q 015791 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKV----NK 183 (400)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~i----nk 183 (400)
++.+.|++++|||++..++.+++.|.++|......+++. ..+++++++++++...|..|||.|.+ .|.. .+
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 456889999999999999999999999997654446553 36788999999999999999999986 5642 22
Q ss_pred CCCCcccCcCCHHHHHHHHHHHHHHHHHH----HHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHH
Q 015791 184 PDLPLASGDLSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (400)
Q Consensus 184 p~RPl~sG~is~~~a~~~~~~l~~lgl~l----~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~ 259 (400)
.++-+...+++++..+.+.+.+...+.++ ....+++.+.++ +++++.+++|+. +|.++++.|+ |++.++..+
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vff 158 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFF 158 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCCH-HHHHHHHHH
Confidence 34555666777777777666555444333 344566545555 468999999995 7999999997 999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHH
Q 015791 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (400)
Q Consensus 260 g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ 339 (400)
|.+.+.|.|.. | .+ ..+...+...+.+++.+..+...|++||+|+|+++|++|+||++|+++++.+...++..
T Consensus 159 G~l~v~g~~yi-q----t~--~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~ 231 (303)
T COG1575 159 GPLIVLGAYYI-Q----TG--RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV 231 (303)
T ss_pred HHHHHHHHHHH-h----cc--cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence 98877776543 2 11 22333455566777778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC-h----HH--HHHHHHHHHHHhhh
Q 015791 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN-N----AS--TYSFYMFIWKAIVL 399 (400)
Q Consensus 340 ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~-~----~~--~~~f~~~i~~l~~~ 399 (400)
+|++.++.......+|+.++.++. +....+..+.+..+. + .+ .....+.+|.+.++
T Consensus 232 a~l~~~~~~i~~~~~~~~ll~ll~----~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~ 294 (303)
T COG1575 232 AYLAIVIFVILGLFPVWGLLFLLA----LPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLA 294 (303)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHH----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 998877655555555544333322 223334444442211 1 12 22455667776654
No 42
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=225.73 Aligned_cols=230 Identities=21% Similarity=0.219 Sum_probs=159.3
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcc
Q 015791 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA 189 (400)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~ 189 (400)
+.+++++++.|+.+......++..+..... . .++.. ....+++.++.+.++|++||+.|+|+|++|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~--~~~~~---~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--L--LGLPI---SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--H--HcChh---HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 457899999999998877766655432110 0 11111 2356678899999999999999999999999999988
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHhhccCCcccc-ccccCCCcchHHHHHHHHHHHHHHH
Q 015791 190 SGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFL-RWKTKPFLAGMCMVTVFGLVYQFSF 267 (400)
Q Consensus 190 sG~is~~~a~~~~~~l~~lgl~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~ppl-rlKr~~~~g~l~i~~~~g~~~~~G~ 267 (400)
+++...+.+..+..+...+++.+. ...|++.+.+++ ++.++++.||. ||. |+||.|.+||++++..+|..+.++.
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFI-IPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 554433333333334444444432 234776666654 56778999995 454 5899999999999998887666543
Q ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 015791 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (400)
Q Consensus 268 ~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~ 347 (400)
+.. .+.. ++...+....+++++..++++++|++|+|+|+++|+||+|+++|+|++.++...+..++++..+..
T Consensus 152 ~~~-----~~~~--~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~ 224 (285)
T PRK12872 152 VYY-----YQLT--IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILG 224 (285)
T ss_pred HHh-----cccc--cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 322 1221 122333334555556778899999999999999999999999999999999888888877766654
Q ss_pred HHhhhhhhH
Q 015791 348 GASSSFQLV 356 (400)
Q Consensus 348 g~~~~~~~~ 356 (400)
......++.
T Consensus 225 ~~~~~~~~~ 233 (285)
T PRK12872 225 VYTGLLPLL 233 (285)
T ss_pred HHHhHhhHH
Confidence 443333443
No 43
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=2.3e-26 Score=218.97 Aligned_cols=243 Identities=25% Similarity=0.301 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--CCCCCCcccCcCCHHHHHHHHHH
Q 015791 127 TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLT 204 (400)
Q Consensus 127 ~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~i--nkp~RPl~sG~is~~~a~~~~~~ 204 (400)
+..+++.|.+++... ..++.. +..+.++.++.+.++|.+||+.|+|+|+. |+|+||+++|+++++++..++.+
T Consensus 4 ~~~~~l~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~ 78 (257)
T PF01040_consen 4 SFLPVLAGLALASGG--PFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI 78 (257)
T ss_pred HHHHHHHHHHHHHcC--CCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence 345566664444332 334422 45566777799999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCccchH
Q 015791 205 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 284 (400)
Q Consensus 205 l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~ 284 (400)
+.++++.+++..++..+.+.+ ++.+.+++|| ||+|+||++++++++++..++..+..|.+. .++.. +.
T Consensus 79 ~~~l~l~l~~~~~~~~~~~~~-~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~ 146 (257)
T PF01040_consen 79 LLLLGLLLALLLGPWFLLILL-LGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGDP--PP 146 (257)
T ss_pred HHHHHHHHHHhcCchhHHHHH-HHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCcc--cH
Confidence 999999999888887777664 4666779999 788999999999999888777665555443 23221 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 015791 285 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGH 364 (400)
Q Consensus 285 ~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~ 364 (400)
+.+....+..++.......+|++|+|+|++.|+||+|+++|++++.. ..+....++. ..........+ ......
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~--~~~~~~~~~~-~~~~~~~~~~~---~~~~~~ 220 (257)
T PF01040_consen 147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY--LLLTAGLLLF-LLLLLGLFSPW---PLIIAL 220 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHH---HHHHHH
Confidence 33333444455566667788999999999999999999999999976 2222222222 11111111111 122223
Q ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791 365 STLAFLLWLRAQTVDLSNNASTYSFYMF 392 (400)
Q Consensus 365 ~~l~~~l~~~~~~~d~~~~~~~~~f~~~ 392 (400)
...+..++...+..+.++++.+++++++
T Consensus 221 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 248 (257)
T PF01040_consen 221 LLAALALIFILWFFRKRDPKKPERLFFF 248 (257)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3334444555566666666666655533
No 44
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.94 E-value=5.1e-27 Score=219.71 Aligned_cols=264 Identities=17% Similarity=0.125 Sum_probs=193.0
Q ss_pred HHHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK- 183 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~---l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink- 183 (400)
-+.+++.|.+++|.+.++++.+.. ....++|... ...+.. .-+.+.-++++++++++|.+||+.|+|+|+..+
T Consensus 60 ~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeR 136 (353)
T KOG1381|consen 60 SPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPSI-KMLALFGVGALLMRGAGCTINDLWDKDLDAKVER 136 (353)
T ss_pred CCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccchh-HHHHHhcccHHHhccCCceehhhhhhhhhhhHhh
Confidence 345689999999999999987644 3344555432 122221 112345579999999999999999999998755
Q ss_pred -CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791 184 -PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (400)
Q Consensus 184 -p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~ 262 (400)
+.||+++|++|+++|..+..+.+.+|+.+...+|+....++. .++.+.+.|+. +||.+.+.++..+..+.+.
T Consensus 137 tklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~-~sl~~v~~ypl------~kr~TY~pq~vLgltfnwG 209 (353)
T KOG1381|consen 137 TKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGA-SSLALVITYPL------MKRFTYWPQLVLGLTFNWG 209 (353)
T ss_pred hcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcc-cccccEEEeeh------hhhcchhHHHHHhhhcchh
Confidence 489999999999999999999999999999999988877764 57788899996 8999999998766554433
Q ss_pred HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (400)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~ 342 (400)
..+|+ ..+ ++.. .+...+-+++--..|++..++++++||.++|.+.|+|+.+.++|++...|++..- .....
T Consensus 210 AllGw-----~A~-~g~~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~-a~~ia 281 (353)
T KOG1381|consen 210 ALLGW-----CAL-KGSL-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG-AAQIA 281 (353)
T ss_pred hhhcc-----hhh-cCcc-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh-HHHHH
Confidence 33332 122 2222 1211222233344678899999999999999999999999999999888876432 23333
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392 (400)
Q Consensus 343 ~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~ 392 (400)
....+|+.+.+.|- +..+....+..+.+|...+|++|+.+|-.+|..
T Consensus 282 ~La~aG~~s~q~~p---yy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~s 328 (353)
T KOG1381|consen 282 SLAAAGIASDQTWP---YYAALGAVAARLGSQIYKVDIDNPSDCWKKFKS 328 (353)
T ss_pred HHHHhhhccCCCch---HHHHHHHHHHHHHhheeeeecCChHHHHHHHHh
Confidence 34556777777663 333455667788899999999999999776643
No 45
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=2.6e-24 Score=209.17 Aligned_cols=221 Identities=21% Similarity=0.239 Sum_probs=140.9
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL 186 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R 186 (400)
..+.++.++++.||+++..++.+++.|.++|....++ +++..+ .+++ ...+..+.+.|++||++|+|+||.|++.+
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~--~ll~-~~~i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAV--ALFA-YFLFPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHH--HHHH-HHHHHHHHHHhcchhhhhhhccccCCCcc
Confidence 3567888999999999999999999999999654332 343211 1111 11134556678899999999999998654
Q ss_pred C---cccCcCCHHHHHH-HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791 187 P---LASGDLSMGTGLA-ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (400)
Q Consensus 187 P---l~sG~is~~~a~~-~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~ 262 (400)
. ++ .+.+.+.. ..+....+++.+.+..++....+ +++.++++++|| .||+|+|++++.+.. +.+.+. .
T Consensus 81 ~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS--~pP~rlk~~p~~~~~-~~g~~~-~ 152 (282)
T PRK12875 81 REREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYS--APPLRFKTTPVLDSL-SNGLYI-L 152 (282)
T ss_pred CCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHc--CCCccchhccHHHHH-HHHHHH-H
Confidence 3 33 11122221 12223334444444444433332 245778899999 589999999985443 322222 2
Q ss_pred HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (400)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~ 342 (400)
..++.|.. ..+. .+...+ .+...+++.+++++||+||+|+|+++|+||+|+++|+|++.+++..+..++.+
T Consensus 153 ~~~~~y~~-----~tg~--~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~ 223 (282)
T PRK12875 153 PGVAAYAL-----VSGS--LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA 223 (282)
T ss_pred HHHHHHHH-----HcCC--CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence 22333322 1222 222222 22235678899999999999999999999999999999999888777666655
Q ss_pred HHHHHH
Q 015791 343 VSVIVG 348 (400)
Q Consensus 343 ~~~~~g 348 (400)
..+..+
T Consensus 224 ~~~~~~ 229 (282)
T PRK12875 224 AFAAVD 229 (282)
T ss_pred HHHHHH
Confidence 555443
No 46
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=1.6e-24 Score=210.83 Aligned_cols=179 Identities=19% Similarity=0.142 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhcc
Q 015791 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYS 236 (400)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys 236 (400)
.+.+.+...++|++||++|+|+|++|+|+||.+ +++.+..++++..++|+.+++..|++. ++ +++.+.+++||
T Consensus 64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS 136 (307)
T PRK13591 64 CIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYS 136 (307)
T ss_pred HHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhc
Confidence 345667789999999999999999999999986 788899999999999999999888643 33 35777899999
Q ss_pred CC--ccc--cccccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhh
Q 015791 237 VD--LPF--LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGD 312 (400)
Q Consensus 237 ~~--~pp--lrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD 312 (400)
.+ .+| +|+|+++.+||+.++..+|..+..+. .. .... + .+...+..+.....++++++||++|+|||
T Consensus 137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~--~~~~--~-~~~~~i~l~~~~~l~~~~iindirDiEGD 207 (307)
T PRK13591 137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GS--YCGS--L-IPVGLIFLFFGVKLFINSCVYDFKDVKGD 207 (307)
T ss_pred CCCCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hh--hhhh--H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence 63 124 48899999999999988886443211 00 0110 0 01111111111123567789999999999
Q ss_pred HhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 015791 313 KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 351 (400)
Q Consensus 313 ~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~~~ 351 (400)
++.|+||+|+++|++++.++...+..++++..++.....
T Consensus 208 r~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g 246 (307)
T PRK13591 208 TLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFG 246 (307)
T ss_pred HHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888887766554443
No 47
>PLN02776 prenyltransferase
Probab=99.93 E-value=6e-24 Score=210.22 Aligned_cols=259 Identities=14% Similarity=0.018 Sum_probs=169.9
Q ss_pred hhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCCcccCcCCH
Q 015791 118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLSM 195 (400)
Q Consensus 118 l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl~sG~is~ 195 (400)
+++|+.....+++.+.|+++|.+..+ ++. .+++++++.+++++++|++||++|+|+|+.|+ ++||+++|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 46888888888999999999854332 322 24567789999999999999999999999866 599999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015791 196 GTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 274 (400)
Q Consensus 196 ~~a~~~~~~l~~lgl~l-~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~ 274 (400)
++|+.+++++.++|+.+ ++.+|+.+..++++..++....||. +||++.+ |..+|+..|...+++.+.+
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~A---- 144 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAA---- 144 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHH----
Confidence 99999999999988854 5668988877765433444678985 8999986 6678887775444332332
Q ss_pred hhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhh--chhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 015791 275 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL--GKENVLRLCVYALFFAYGVSVIVGASSS 352 (400)
Q Consensus 275 v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~l--G~k~a~~l~~~l~~~ay~~~~~~g~~~~ 352 (400)
+ ++...+ ..+++...+.+|+........+.|+|+|+++|++++|+.- |++.+..+....+.+..+..+.... ..
T Consensus 145 v-tg~~~~--~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~-g~ 220 (341)
T PLN02776 145 A-SGQLDA--GAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDW-GV 220 (341)
T ss_pred H-cCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 2 222322 2334455556676655555567788899999999999976 4454444332222221111111111 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHhh
Q 015791 353 FQLVKLVSIIGHSTLAFLLWLRAQTVDLSN-NASTYSFYMFIWKAIV 398 (400)
Q Consensus 353 ~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~-~~~~~~f~~~i~~l~~ 398 (400)
.++ +..+.+.++.+.+++...+-.+.+| +.+.+.|+..++++.-
T Consensus 221 ~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~~ 265 (341)
T PLN02776 221 TSS--PFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLPA 265 (341)
T ss_pred hhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 111 2333444444455555666554444 4455667777777643
No 48
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-24 Score=207.57 Aligned_cols=263 Identities=18% Similarity=0.238 Sum_probs=182.8
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--C
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--D 185 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp--~ 185 (400)
...++++|+++++|+......++.+.|+++|.+ ...++.. ++.++++..+..++++++|++.|+|+|++++| +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 467899999999999999999999999999975 2344432 56788999999999999999999999999875 9
Q ss_pred CCcccCcCCHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHH
Q 015791 186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ 264 (400)
Q Consensus 186 RPl~sG~is~~~a~~~~~~l~~lgl~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~ 264 (400)
||+++|++++++++.++.++.++|+.+. +..|+.+..++++..++..+.||.+ +||++.. |+.+|+..|..++
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~-NiviGg~aGa~Pp 162 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQ-NIVIGGFAGAMPP 162 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCccc-ceeeeeccccccc
Confidence 9999999999999999999999998887 7789888777777778899999985 8999986 7778877777666
Q ss_pred -HHHHHHHHHHhhcCCccchHHHHHHHHHHHH----HHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHH
Q 015791 265 -FSFFIHFQKYVLGRPVVITRPLIFAAAIIST----ISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (400)
Q Consensus 265 -~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~----~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ 339 (400)
+|+.+ +.| ....+..+++..+|++. |+++ +.-.||-+++|+..+|++-|++.+.+. +..+.+
T Consensus 163 liGwaA-----vtg-~~~~~a~~Lf~IiF~WtPpHfwALA------l~~~~DY~~AgiPMlPvv~G~~~t~~~-I~~y~~ 229 (304)
T COG0109 163 LIGWAA-----VTG-SISLGAILLFAIIFLWTPPHFWALA------LKYKDDYKAAGIPMLPVVKGERRTKRQ-ILLYTL 229 (304)
T ss_pred cceeee-----eeC-CCCchHHHHHHHHHHhccHHHHHHH------HHHHHHHHHcCCCcccccccHHHHHHH-HHHHHH
Confidence 45322 223 33334444555555543 3333 233455599999999999999988764 333322
Q ss_pred HH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccC-CChHHHHHHHHHHHHHhhh
Q 015791 340 AY-GVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDL-SNNASTYSFYMFIWKAIVL 399 (400)
Q Consensus 340 ay-~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~-~~~~~~~~f~~~i~~l~~~ 399 (400)
.. ...++... .+..++.+.+...++...+++...+.-. +|++..++ +|++.+.|+
T Consensus 230 ~l~~~sl~~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~k--lF~~S~~yL 286 (304)
T COG0109 230 ALAPVSLLLAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARK--LFKYSIIYL 286 (304)
T ss_pred HHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH--HHHHHHHHH
Confidence 22 22222222 1122233443334444444555555422 34333333 555555554
No 49
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=4.4e-23 Score=199.25 Aligned_cols=178 Identities=13% Similarity=0.152 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 015791 152 EFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL 231 (400)
Q Consensus 152 ~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l 231 (400)
+.+++++..++..++++++||++|+|+||+|+|+||+|||++|+++++.++.++.++++.++... ...+ ...+.
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i-~~~~i 120 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNV-GWFLF 120 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHH
Confidence 35667777889999999999999999999999999999999999999999988877777666544 1111 22334
Q ss_pred Hhhc-----cCCccccccccCCCcchHHHHHHHHHHHHH--HHHHHH-HHHhhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 015791 232 GTAY-----SVDLPFLRWKTKPFLAGMCMVTVFGLVYQF--SFFIHF-QKYVLGRPVVITRPLIFAAAIISTISAVMSLL 303 (400)
Q Consensus 232 ~~~Y-----s~~~pplrlKr~~~~g~l~i~~~~g~~~~~--G~~~~~-~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii 303 (400)
.+.| +. ++|+.++.||+.++...|..+.. +.+.+. +....|.+. .....+.+.+...+.++++|+.
T Consensus 121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~ 194 (299)
T PRK13592 121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVC 194 (299)
T ss_pred HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence 5556 65 48999999999998877754432 322210 001122211 1110122223333347899999
Q ss_pred hhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 015791 304 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (400)
Q Consensus 304 ~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~ 343 (400)
+|++| |||++ |.+|+|+++|.|++.++..++..++.+.
T Consensus 195 KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~ 232 (299)
T PRK13592 195 RKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILT 232 (299)
T ss_pred HhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHH
Confidence 99999 88886 5999999999999988877776555443
No 50
>PRK08238 hypothetical protein; Validated
Probab=99.87 E-value=3.9e-20 Score=191.95 Aligned_cols=191 Identities=24% Similarity=0.265 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--C
Q 015791 106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--K 183 (400)
Q Consensus 106 ~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--k 183 (400)
.+.+.++++|++++|||++.++++.+ ++.+.+.. .. ++..+...++++++..++.+++|++||++|+|+||.| |
T Consensus 185 ~~~~~~~~~~~~l~Rp~q~~kn~l~~-~p~l~a~~-~~--~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk 260 (479)
T PRK08238 185 PPRPARLRTWLKALRVHQWAKNLLVF-VPLLAAHQ-FG--DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRK 260 (479)
T ss_pred CCCchHHHHHHHHhCCcHHHHHHHHH-HHHHHhcc-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCC
Confidence 33456899999999999999998864 47766632 21 2222223567788888999999999999999999998 5
Q ss_pred CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHH
Q 015791 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (400)
Q Consensus 184 p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~ 263 (400)
|+||++||++|+++|+.++.+++++|+.+++.+|+..+.. ++..+++.++||. ++||++++++++++..++.-+
T Consensus 261 ~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~-~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~ 334 (479)
T PRK08238 261 RRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLV-LLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRI 334 (479)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHH
Confidence 7999999999999999999999999999999888854444 3467788899996 489999999998887776655
Q ss_pred HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCC
Q 015791 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF 317 (400)
Q Consensus 264 ~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~Gi 317 (400)
..|... .+. ..+. |++ ++..++.+...+.|...|.++++..|.
T Consensus 335 ~~G~~a------~~~--~~s~--wll-~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 335 IAGAAA------IGV--ALSF--WLL-AFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHH------hcc--CHHH--HHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 555422 121 1222 221 222233455678888889988888876
No 51
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.86 E-value=1.6e-19 Score=176.44 Aligned_cols=149 Identities=26% Similarity=0.346 Sum_probs=116.1
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPD 185 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--kp~ 185 (400)
..+++++|++++||++++..++.+. +.+++.... +.. .+...++++++..++.+++|++||++|+|+||.| ||+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~~-~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNLL-NPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhhc-ccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 4567899999999999999887544 444443211 111 1223456677778889999999999999999986 689
Q ss_pred CCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHH
Q 015791 186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF 265 (400)
Q Consensus 186 RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~ 265 (400)
||+++|++|+++|+.++.++.++|+.+++.+|+..+.+. +..+++.++||. ++||++.+++++++..++.-+..
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~ 156 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIA 156 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887766654 457788899996 48999999988887666654444
Q ss_pred H
Q 015791 266 S 266 (400)
Q Consensus 266 G 266 (400)
|
T Consensus 157 G 157 (295)
T PRK12324 157 G 157 (295)
T ss_pred H
Confidence 4
No 52
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.38 E-value=1e-12 Score=121.32 Aligned_cols=231 Identities=16% Similarity=0.155 Sum_probs=156.7
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccccCCCC
Q 015791 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDKVNKPD 185 (400)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~--e~D~inkp~ 185 (400)
...+.+.|.-..||+....++.+...|.++|+......++... .++++.++.+..+.++|.+|.|+|. .+|+....+
T Consensus 57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkadd 135 (359)
T KOG4581|consen 57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADD 135 (359)
T ss_pred HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH-HHHHHHhhheeeecccchhhhhhhhhhccccccccc
Confidence 4578899999999999999999999999999754332233222 2456777888899999999999997 478877779
Q ss_pred CCcccCcCCHHHHHHHHHHHHHHHHHH---HHHhchhH---HHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHH
Q 015791 186 LPLASGDLSMGTGLAITLTLSLTSLAI---ALSLQSPP---LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (400)
Q Consensus 186 RPl~sG~is~~~a~~~~~~l~~lgl~l---~~~lg~~~---l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~ 259 (400)
|.++...+.+.+...+++++...|... ...++|.- +.+.-+.++--.++|+. -+.+|+..+ |.+++.+.+
T Consensus 136 rtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytg---gigfkyial-gdliili~f 211 (359)
T KOG4581|consen 136 RTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTG---GIGFKYIAL-GDLIILILF 211 (359)
T ss_pred hhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEec---ccceEEEec-cCEEEEEee
Confidence 999999999999988888887665433 22344321 11111235555678885 355777665 777676666
Q ss_pred HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHH
Q 015791 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (400)
Q Consensus 260 g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ 339 (400)
|.+.++=.|+ .++ | ...+.+ + --.+.+.+-+-++.+-|+-+|.|.||++|+-|+++.+|+..+-.++..++..
T Consensus 212 gpiavlfaf~-~q~---g-~l~~~~-l-~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~ 284 (359)
T KOG4581|consen 212 GPIAVLFAFA-IQT---G-HLAIFP-L-GYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFA 284 (359)
T ss_pred chHHHHHHHH-Hhc---C-ceeEEe-e-hheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHH
Confidence 6544322222 121 2 221111 1 0011222234466788999999999999999999999998887777777777
Q ss_pred HHHHHHHHHHh
Q 015791 340 AYGVSVIVGAS 350 (400)
Q Consensus 340 ay~~~~~~g~~ 350 (400)
.|.+..+.+.-
T Consensus 285 py~lf~i~~~~ 295 (359)
T KOG4581|consen 285 PYLLFFIFALH 295 (359)
T ss_pred HHHHHHHHHHH
Confidence 88776655443
No 53
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.36 E-value=5.8e-13 Score=128.36 Aligned_cols=210 Identities=12% Similarity=0.123 Sum_probs=141.7
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCC
Q 015791 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLP 187 (400)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp--~RP 187 (400)
..++.|+|+.+|+-....+++...|+++|.++ +++. .++.+.+|..+..+++|++||+++.+.|..+++ .||
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~---~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFP---TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccC---CCcc---hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 46789999999998777777788899988654 3332 256778899999999999999999999998764 999
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHH-H
Q 015791 188 LASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ-F 265 (400)
Q Consensus 188 l~sG~is~~~a~~~~~~l~~lgl~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~-~ 265 (400)
+++|++++..|+.++.+....|+.+..+ +|+....++..=.++.+++|+- +||..+ .|..++.+-|.+++ +
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrihi-inTWvGavVGAIPPLM 238 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIHI-INTWVGAVVGAIPPLM 238 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhhh-hhhHHHHHhccCCccc
Confidence 9999999999999999888888766554 7877666665434566788884 898876 47777777776665 5
Q ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhh---chhhHHHHHHHHHHHH
Q 015791 266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL---GKENVLRLCVYALFFA 340 (400)
Q Consensus 266 G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~l---G~k~a~~l~~~l~~~a 340 (400)
|+-.. .|. ......++..+++.+.|---..+-.+++ ++-.+.|.+.+++.= -++.+.+.+..++.+.
T Consensus 239 GwAAa-----sg~-l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~ 308 (409)
T KOG1380|consen 239 GWAAA-----SGL-LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS 308 (409)
T ss_pred hhhhh-----ccC-CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence 64221 122 1111112222333332211122333332 244899999998852 3344445554444444
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=92.26 E-value=0.81 Score=45.19 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHH
Q 015791 155 KALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAIT 202 (400)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~ 202 (400)
+..+......+..+..|++.|.|+|+.|+++.+.. ++..+.+..+.
T Consensus 180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l~ 225 (303)
T COG1575 180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKLY 225 (303)
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHHH
Confidence 34455666777788899999999999998755433 34445554443
No 55
>PRK13591 ubiA prenyltransferase; Provisional
Probab=90.16 E-value=0.95 Score=44.89 Aligned_cols=66 Identities=26% Similarity=0.333 Sum_probs=38.3
Q ss_pred hhhhcccccccccCC-CCCCcccCcCCHHHHHHHHHHHHHHH---HHHHHHhc-----hhHHHHHHHHHHHHHhhccC
Q 015791 169 TVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTS---LAIALSLQ-----SPPLIFGLIVWFLLGTAYSV 237 (400)
Q Consensus 169 ~iNd~~D~e~D~ink-p~RPl~sG~is~~~a~~~~~~l~~lg---l~l~~~lg-----~~~l~~~l~~~~~l~~~Ys~ 237 (400)
.+||+-|.|.|+.+. +.-|+.=| ++.+..+...+.+++ .+++...| |...+.+++.+++..+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 689999999999875 45666555 344433332222221 22222222 33344456678888899985
No 56
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=89.98 E-value=3.3 Score=40.18 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCCcccCc
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (400)
+..++.......+||.-|+|.|+.++ +.-|..-|+
T Consensus 168 ~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 168 VFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 34445566667889999999999754 566766564
No 57
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=87.21 E-value=5.8 Score=39.36 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=25.9
Q ss_pred HHHHHHhhhhhcccccccccCCC-CCCcccCcCCHHHHHHHHH
Q 015791 162 LMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITL 203 (400)
Q Consensus 162 l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~is~~~a~~~~~ 203 (400)
+........||+-|+|.|+.+.+ .-|. ++.++.+..+..
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~ 224 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLP 224 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHH
Confidence 55667778899999999998764 4444 334555544433
No 58
>PRK13592 ubiA prenyltransferase; Provisional
Probab=86.99 E-value=13 Score=36.76 Aligned_cols=45 Identities=13% Similarity=0.272 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCchhhHhcCCccchhhhc---hhhHHHHHHHHHHHHH
Q 015791 296 ISAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCVYALFFAY 341 (400)
Q Consensus 296 ~~~~~~ii~di~D~egD~~~GirTlpV~lG---~k~a~~l~~~l~~~ay 341 (400)
...+-.++||+.|+|-|+.. +..=|+-=| ++.++.++..+..++.
T Consensus 58 ~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~~~l 105 (299)
T PRK13592 58 FWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVAVSV 105 (299)
T ss_pred HHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 34556889999999999665 666666555 3555555544433333
No 59
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=86.37 E-value=7.3 Score=38.02 Aligned_cols=36 Identities=25% Similarity=0.176 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791 157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (400)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (400)
.++.++....-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus 166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 44556666777889999999999964 4777877774
No 60
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=86.15 E-value=3.2 Score=41.35 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCCC-CCCcccCcCCHHHHHHHHHHHHHH
Q 015791 156 ALLSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSLT 208 (400)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~is~~~a~~~~~~l~~l 208 (400)
..+...+........||+-|+|.|+.+.+ .-|.. +.++.+..+..++..+
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~---lG~~~a~~l~~~l~~~ 244 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYY---IGREKGVVLFAILFYA 244 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeee---EcHHhHHHHHHHHHHH
Confidence 44555666777789999999999998754 44443 4455555544443333
No 61
>PLN00012 chlorophyll synthetase; Provisional
Probab=85.31 E-value=9 Score=39.19 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791 160 AVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (400)
Q Consensus 160 ~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (400)
.++...+....||+-|+|.|+.. ++.-|+.-|+
T Consensus 261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 34566667889999999999864 5777776664
No 62
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=84.30 E-value=5.1 Score=39.33 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ 217 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg 217 (400)
++..+...+...+||+-|.|.||.+. +.-|. ++.++.+..+..++.+++.++....+
T Consensus 167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444577788999999999999764 34444 45577787777777766665544444
No 63
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.11 E-value=10 Score=36.94 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCCcccCc
Q 015791 157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (400)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (400)
.+..++....-..+|++.|+|.|+.++ |.-|+.-|+
T Consensus 171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 345556666667889999999999754 667776664
No 64
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=83.88 E-value=26 Score=34.31 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ 217 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg 217 (400)
++..+...+...+|++-|+|.|+..+ +.-|. ++..+.+..+..++.+++..+-+..+
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456677778999999999999654 55555 34456666666666555554444344
No 65
>PLN02922 prenyltransferase
Probab=83.77 E-value=4.8 Score=40.09 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhhcccccccccCCC-CCCcccCcCCHHHHHHHHHH
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLT 204 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~is~~~a~~~~~~ 204 (400)
+...+........||+-|+|.|+.+++ .-|.. +.++.+..+...
T Consensus 195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~l~~~ 239 (315)
T PLN02922 195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVR---LGTEKGSRVVRW 239 (315)
T ss_pred HHHHHHHHHHHHHccCcchhhHHHcCccceeeE---EChHHHHHHHHH
Confidence 334455667788999999999998765 34443 345555444333
No 66
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=83.17 E-value=7.2 Score=37.95 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791 157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (400)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (400)
.+..++....-..+||..|+|.|+.. .|.-|+.-|+
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 33455556667789999999999864 4677776663
No 67
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=82.17 E-value=14 Score=36.35 Aligned_cols=46 Identities=13% Similarity=-0.015 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhhcccccccccCCC-CCCcccCcCCHHHHHHHHHHHHH
Q 015791 159 SAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSL 207 (400)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~is~~~a~~~~~~l~~ 207 (400)
...+........||+-|+|.|+.+.+ .-|+ ++.++.+..+...+..
T Consensus 169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~ 215 (285)
T TIGR02235 169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVIS 215 (285)
T ss_pred HHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHH
Confidence 33456677788899999999998754 4444 3445665554444333
No 68
>PRK13595 ubiA prenyltransferase; Provisional
Probab=82.13 E-value=27 Score=34.46 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.6
Q ss_pred HHHHHHHHhhcCCchhhHhcCCc
Q 015791 296 ISAVMSLLKDIPDEDGDKQFGFQ 318 (400)
Q Consensus 296 ~~~~~~ii~di~D~egD~~~Gir 318 (400)
.......+||+-|+|.|+++-++
T Consensus 59 ~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 59 FNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHHHhhhhhhhhccCCCC
Confidence 35566789999999999866443
No 69
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=81.47 E-value=15 Score=35.87 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCCcccCcCCHHHHHHHHHHHHH
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSL 207 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~is~~~a~~~~~~l~~ 207 (400)
+...+........||+-|+|.|+.+. +.-|..=| .+.+..+...+..
T Consensus 175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~ 222 (293)
T PRK06080 175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLA 222 (293)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHH
Confidence 33445566677889999999999764 44444334 4554444433333
No 70
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=81.36 E-value=7.5 Score=38.39 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCCchhhHhc-CCccchhhhc---hhhHHHHHHHH
Q 015791 297 SAVMSLLKDIPDEDGDKQF-GFQSISSKLG---KENVLRLCVYA 336 (400)
Q Consensus 297 ~~~~~ii~di~D~egD~~~-GirTlpV~lG---~k~a~~l~~~l 336 (400)
..+...+||+-|+|.|+++ .++.=|..=| .+.+..+...+
T Consensus 59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l 102 (295)
T PRK12324 59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVL 102 (295)
T ss_pred HHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHH
Confidence 4456789999999999986 2333344434 44454443333
No 71
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=78.64 E-value=8.2 Score=38.32 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791 162 LMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (400)
Q Consensus 162 l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (400)
+...+....||+.|+|.|+.. ++.-|+.-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 345556789999999999975 4677776664
No 72
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=78.35 E-value=9.7 Score=37.68 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhcccccccccCC-CCCCcccCcCCHHHHHHHHH
Q 015791 161 VLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITL 203 (400)
Q Consensus 161 ~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~is~~~a~~~~~ 203 (400)
.+...+....||+.|+|.|+.+. +.-|+.-| ++.+.....
T Consensus 193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~~~ 233 (306)
T TIGR02056 193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWICV 233 (306)
T ss_pred HHHHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHHHH
Confidence 34566677899999999999754 56666545 444444333
No 73
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=78.08 E-value=16 Score=35.30 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCCchhhHhcCCccchhhhch
Q 015791 297 SAVMSLLKDIPDEDGDKQFGFQSISSKLGK 326 (400)
Q Consensus 297 ~~~~~ii~di~D~egD~~~GirTlpV~lG~ 326 (400)
..+...+||+-|+|.|++. ++.=|..-|+
T Consensus 50 ~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 50 SGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 4455789999999999988 6777777774
No 74
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=77.69 E-value=29 Score=33.80 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCCcccCc
Q 015791 156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (400)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (400)
..+..++-...-...|.+.|+|.|+..+ |.-|+.-|.
T Consensus 167 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 167 LFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 3445566666777889999999999754 677776665
No 75
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=77.63 E-value=7.1 Score=38.63 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCCcccC
Q 015791 157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 191 (400)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG 191 (400)
.++.++...+-..+|+..|+|.|+..+ +.-|+.=|
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 445666677778899999999998654 66676555
No 76
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=77.02 E-value=24 Score=34.58 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=26.9
Q ss_pred HHHHHHHhhhhhcccccccccCCC-CCCcccCcCCHHHHHHHHHHH
Q 015791 161 VLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTL 205 (400)
Q Consensus 161 ~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~is~~~a~~~~~~l 205 (400)
.+........|+.-|+|.|+.+.+ .-|. ++..+.+..+...+
T Consensus 174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l 216 (284)
T TIGR00751 174 GLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGL 216 (284)
T ss_pred HHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHH
Confidence 345566777999999999998654 3343 34455555444333
No 77
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=76.93 E-value=15 Score=34.38 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcCCchhhHhc-CCccchhhhch
Q 015791 295 TISAVMSLLKDIPDEDGDKQF-GFQSISSKLGK 326 (400)
Q Consensus 295 ~~~~~~~ii~di~D~egD~~~-GirTlpV~lG~ 326 (400)
+.......+||+-|.|.|+.. +++.-|..-|+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~ 66 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR 66 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence 345566788999999999996 34555555554
No 78
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=76.57 E-value=14 Score=36.65 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCCcccC
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 191 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG 191 (400)
+..++...+...+||+.|+|.||.++ +.-|+.=|
T Consensus 189 ~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG 223 (308)
T PRK12887 189 LFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLG 223 (308)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHh
Confidence 34556667778899999999999765 44454333
No 79
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=75.82 E-value=34 Score=33.50 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCCcccCc
Q 015791 157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (400)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (400)
.+...+....-..+|++.|+|.|+..+ |.-|+.-|.
T Consensus 165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 345556666778999999999999654 677766564
No 80
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=75.77 E-value=20 Score=34.93 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCCchhhHhcCC-ccchhhhch
Q 015791 296 ISAVMSLLKDIPDEDGDKQFGF-QSISSKLGK 326 (400)
Q Consensus 296 ~~~~~~ii~di~D~egD~~~Gi-rTlpV~lG~ 326 (400)
...+...+||+-|+|-|+++-+ |.-|..-|+
T Consensus 59 ~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 59 ARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 3556678999999999998866 345555554
No 81
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=75.42 E-value=28 Score=34.10 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCCcccCcC
Q 015791 157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDL 193 (400)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~i 193 (400)
.+..++...+-..+|++.|+|.|+... +.-|+.-|+-
T Consensus 172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~ 209 (290)
T PRK12870 172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRY 209 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccc
Confidence 446677777888899999999999654 6666655543
No 82
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=74.91 E-value=11 Score=37.05 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (400)
+..++-...-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus 169 ~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 169 LAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 3344445555578889999999864 4778877775
No 83
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=74.81 E-value=13 Score=36.06 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=22.4
Q ss_pred HHHHHHhhhhhcccccccccCC-CCCCcccCc
Q 015791 162 LMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (400)
Q Consensus 162 l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (400)
+...+...+||+-|+|.|+.++ +.-|+.=|+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 3445567899999999999754 566665554
No 84
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=74.39 E-value=17 Score=35.12 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhhcccccccccCC-CCCCcccCc
Q 015791 159 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (400)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (400)
..++...+-..+||+.|.|.|+.++ |.-|+.-|+
T Consensus 165 ~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~ 199 (276)
T PRK12882 165 LAALATLAREIIKDVEDIEGDRAEGARTLPILIGV 199 (276)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence 3344556678899999999999765 666765554
No 85
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=72.78 E-value=15 Score=36.84 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCCcccC
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 191 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG 191 (400)
+..++...+...+||+.|+|.|+... +.-|+.=|
T Consensus 187 ~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G 221 (331)
T PRK12392 187 GLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221 (331)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence 34455667777889999999999754 56666545
No 86
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=72.25 E-value=33 Score=33.81 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791 157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (400)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (400)
.+..++....-..+||+.|+|.|+.+ .|.-|+.-|+
T Consensus 181 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 181 MVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 34556667778899999999999975 4677877775
No 87
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=70.93 E-value=15 Score=35.65 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791 161 VLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (400)
Q Consensus 161 ~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (400)
++...+-...||+.|+|.|+.. .|.-|+.-|+
T Consensus 164 fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 164 FLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 3444556677999999999975 4677776664
No 88
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=70.93 E-value=42 Score=32.97 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (400)
+..++-+.+-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 4556666777889999999999864 4777776665
No 89
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=68.85 E-value=43 Score=32.45 Aligned_cols=40 Identities=18% Similarity=0.081 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCchhhHhcCCccchhhhc---hhhHHHHHHHHH
Q 015791 297 SAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCVYAL 337 (400)
Q Consensus 297 ~~~~~ii~di~D~egD~~~GirTlpV~lG---~k~a~~l~~~l~ 337 (400)
..+-..+||+-|+|-|++.. ++=|+.=| ++.+..+...+.
T Consensus 50 ~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~ 92 (279)
T PRK09573 50 CAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLF 92 (279)
T ss_pred HHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHH
Confidence 45557899999999999764 45555444 445544444333
No 90
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=65.59 E-value=44 Score=32.86 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=22.8
Q ss_pred HHHHHHHhhcCCchhhHhcCC-ccchhhhch
Q 015791 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK 326 (400)
Q Consensus 297 ~~~~~ii~di~D~egD~~~Gi-rTlpV~lG~ 326 (400)
..+-..+||+-|+|-|++..+ +.-|..-|+
T Consensus 58 ~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 58 RGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 445578999999999998755 567776675
No 91
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=65.29 E-value=72 Score=31.70 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (400)
+..++....-..++++.|+|.|+.. .|.-|+.-|.
T Consensus 199 ~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 199 AGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 3445555566677899999999864 5777776665
No 92
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=63.82 E-value=72 Score=31.34 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCCcccC
Q 015791 157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 191 (400)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG 191 (400)
.++.++-..+-..+.++.|+|.|+... +.-|+-=|
T Consensus 165 ~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 165 FISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 345566666677999999999999765 55555444
No 93
>PRK08238 hypothetical protein; Validated
Probab=63.62 E-value=30 Score=36.58 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCCchhhHhcCC-ccchhhhch---hhHHHHHHHHH
Q 015791 296 ISAVMSLLKDIPDEDGDKQFGF-QSISSKLGK---ENVLRLCVYAL 337 (400)
Q Consensus 296 ~~~~~~ii~di~D~egD~~~Gi-rTlpV~lG~---k~a~~l~~~l~ 337 (400)
...+..++||+-|+|.|+++-+ +.=|..=|+ +.+..+..++.
T Consensus 238 ~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~ 283 (479)
T PRK08238 238 CASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLL 283 (479)
T ss_pred HHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999743 444554443 44444444333
No 94
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=61.16 E-value=1.4e+02 Score=29.04 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCchhhHhcCC-ccchhhh---chhhHHHHHH
Q 015791 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKL---GKENVLRLCV 334 (400)
Q Consensus 297 ~~~~~ii~di~D~egD~~~Gi-rTlpV~l---G~k~a~~l~~ 334 (400)
..+-..+||+-|+|-|++..+ +.=|..- .++.+..+..
T Consensus 49 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (279)
T PRK12869 49 SGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGS 90 (279)
T ss_pred HHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHH
Confidence 455578999999999998654 3334433 4455544433
No 95
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=59.83 E-value=85 Score=30.81 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=23.4
Q ss_pred HHHHHHhhhhhcccccccccCCC-CCCcccCcCCHHHH
Q 015791 162 LMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTG 198 (400)
Q Consensus 162 l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~is~~~a 198 (400)
+........|++-|+|.|+.+.+ .-|. ++..+.+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 44566778899999999997654 3333 4445555
No 96
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=59.54 E-value=86 Score=30.97 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCCcccCc
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (400)
++.++-+..-..+-.+.|+|.|+..+ |.-|+.-|+
T Consensus 177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 34444454455666677999999765 777877775
No 97
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=59.46 E-value=1.2e+02 Score=29.59 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCchhhHhcCC-ccchhh---hchhhHHHHHHHH
Q 015791 297 SAVMSLLKDIPDEDGDKQFGF-QSISSK---LGKENVLRLCVYA 336 (400)
Q Consensus 297 ~~~~~ii~di~D~egD~~~Gi-rTlpV~---lG~k~a~~l~~~l 336 (400)
..+-..+||+-|+|-|++.-+ +.=|+. +.++.+..+...+
T Consensus 57 ~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l 100 (296)
T PRK04375 57 AGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVL 100 (296)
T ss_pred HHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHH
Confidence 445578999999999988543 333443 3445554444333
No 98
>PRK11383 hypothetical protein; Provisional
Probab=59.39 E-value=1.1e+02 Score=26.89 Aligned_cols=79 Identities=11% Similarity=0.227 Sum_probs=37.1
Q ss_pred HHHHHHhhccCCccccccc--cCCCcchHHHHHHHHH-HHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 015791 227 VWFLLGTAYSVDLPFLRWK--TKPFLAGMCMVTVFGL-VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLL 303 (400)
Q Consensus 227 ~~~~l~~~Ys~~~pplrlK--r~~~~g~l~i~~~~g~-~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii 303 (400)
.+++..+.|-. -.|-+ ..+. .++.++..|.. +..++.+.++ +.+.+...+.-....++++.....++.+-
T Consensus 50 lglF~avs~QK---~vRD~~egi~v-t~~f~~~cw~a~l~~i~LL~iG---LwNA~l~lsEKGfY~~af~lsLFgai~vQ 122 (145)
T PRK11383 50 LGLFSAASYQK---TVRDKYEGIPT-TSIYYMTCLTVFIISVALLMVG---LWNATLLLSEKGFYGLAFFLSLFGAVAVQ 122 (145)
T ss_pred HHHHHHHHHHH---HHhhcccCCCh-hHHHHHHHHHHHHHHHHHHHHH---HhcCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 45555555542 23344 3343 24555555533 3334443322 23444333333333334333333456788
Q ss_pred hhcCCchhh
Q 015791 304 KDIPDEDGD 312 (400)
Q Consensus 304 ~di~D~egD 312 (400)
|++||...+
T Consensus 123 Kn~RD~~~~ 131 (145)
T PRK11383 123 KNIRDAGIN 131 (145)
T ss_pred hhhhhhhhc
Confidence 999998544
No 99
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=58.90 E-value=55 Score=32.43 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCchhhHhcCC-ccchhhhc---hhhHHHHHHHH
Q 015791 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLG---KENVLRLCVYA 336 (400)
Q Consensus 297 ~~~~~ii~di~D~egD~~~Gi-rTlpV~lG---~k~a~~l~~~l 336 (400)
..+-..+||+-|+|-|++..+ +.=|+.-| ++.+..+...+
T Consensus 60 ~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l 103 (306)
T PRK13362 60 VASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLAL 103 (306)
T ss_pred HHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 445678999999999987654 23455445 44554444433
No 100
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=58.17 E-value=63 Score=31.30 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCchhhHhcCC-ccchhhhc---hhhHHHHHHHHH
Q 015791 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLG---KENVLRLCVYAL 337 (400)
Q Consensus 297 ~~~~~ii~di~D~egD~~~Gi-rTlpV~lG---~k~a~~l~~~l~ 337 (400)
..+-..+||+-|+|-|++..+ +.=|+.-| .+.+..+...+.
T Consensus 48 ~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~ 92 (280)
T TIGR01473 48 AASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLG 92 (280)
T ss_pred HHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 445578999999999997543 33344344 455555444433
No 101
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=56.94 E-value=88 Score=32.25 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhhhcccccc
Q 015791 158 LSAVLMNNYVGTVNQVADVEI 178 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~ 178 (400)
.+.-++...-.++|++++.+.
T Consensus 112 ta~~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 112 TLLILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 344556777789999998754
No 102
>PLN02878 homogentisate phytyltransferase
Probab=52.14 E-value=77 Score=31.14 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhcccccccccCC-CCCCcccCcCCHHHHHHHHHHHHH
Q 015791 160 AVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSL 207 (400)
Q Consensus 160 ~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~is~~~a~~~~~~l~~ 207 (400)
..+.......+||+-|.|-||..+ +.-|+.=| ++.+..++..++.
T Consensus 165 ~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG---~~~~~~i~~~ll~ 210 (280)
T PLN02878 165 MCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLG---QKRVFWLCVNLLE 210 (280)
T ss_pred HHHHHHHHHHHhhCcCchhHHHCCCceechhhC---hHHHHHHHHHHHH
Confidence 344455666999999999999754 55565434 4555554444433
No 103
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=50.01 E-value=1.9e+02 Score=28.61 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhhhcccccccccCC-CCCCcccCc
Q 015791 160 AVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (400)
Q Consensus 160 ~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (400)
.++...+-..+.+..|+|.|+..+ +.-|+.-|.
T Consensus 181 ~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~ 214 (300)
T PRK12876 181 FGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGE 214 (300)
T ss_pred HHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCc
Confidence 333444445677799999999765 566665554
No 104
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=47.61 E-value=1.9e+02 Score=28.71 Aligned_cols=50 Identities=14% Similarity=-0.015 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHHHHHHHHHH
Q 015791 158 LSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSL 210 (400)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl 210 (400)
.+.=++|.+.-+.+|+.|-+.-| +.+|-+........|...+=.++..++
T Consensus 70 ~aiEliH~asLiHDDI~D~s~~R---Rg~pt~~~~~G~~~Ail~GD~L~~~a~ 119 (319)
T TIGR02748 70 VALELIHMASLVHDDVIDDADLR---RGRPTIKSKWGNRIAMYTGDYLFAKSL 119 (319)
T ss_pred HHHHHHHHHHHHhccccCCCCCC---CCCcCHHHHhChHHHHHHHHHHHHHHH
Confidence 45568899999999997765433 455655555666666665555554444
No 105
>PLN02776 prenyltransferase
Probab=46.95 E-value=1.1e+02 Score=30.90 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCchhhHhcCC-ccchhhhch---hhHHHHHHH
Q 015791 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK---ENVLRLCVY 335 (400)
Q Consensus 297 ~~~~~ii~di~D~egD~~~Gi-rTlpV~lG~---k~a~~l~~~ 335 (400)
..+-..+||+-|+|-|++..+ +.=|+.-|+ +.+..+...
T Consensus 42 ~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~ 84 (341)
T PLN02776 42 AASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVV 84 (341)
T ss_pred HHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 445578999999999988755 344554453 445444333
No 106
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=45.77 E-value=2.8e+02 Score=27.29 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhhcccccc
Q 015791 156 ALLSAVLMNNYVGTVNQVADVEI 178 (400)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~ 178 (400)
.+.+.-.+...-.++|+++|.+.
T Consensus 111 lwtas~~~~al~~~lN~i~~~~~ 133 (303)
T COG1295 111 LWTASNGMSALRDALNKIWRVKP 133 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 33445555555667777777765
No 107
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=33.91 E-value=24 Score=32.81 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcCCchhhH----------hcCCccchhhhchh
Q 015791 296 ISAVMSLLKDIPDEDGDK----------QFGFQSISSKLGKE 327 (400)
Q Consensus 296 ~~~~~~ii~di~D~egD~----------~~GirTlpV~lG~k 327 (400)
+..++.+.+|++|+.+|. +.|+.|+|+....+
T Consensus 158 lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~ 199 (236)
T cd00867 158 LGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARE 199 (236)
T ss_pred HHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHH
Confidence 355668899999998887 89999999998843
No 108
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=32.58 E-value=2.5e+02 Score=22.50 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=30.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC
Q 015791 144 DLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN 182 (400)
Q Consensus 144 ~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in 182 (400)
.+++..+.++....++..+...+...-|..+|...|++.
T Consensus 51 ~~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 51 SLTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 356666666777778888888889999999998877653
No 109
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=32.19 E-value=2.4e+02 Score=24.81 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=12.0
Q ss_pred CCcccCcCCHHHHH
Q 015791 186 LPLASGDLSMGTGL 199 (400)
Q Consensus 186 RPl~sG~is~~~a~ 199 (400)
-|+++|+++.++..
T Consensus 59 vPiAtGki~~~~l~ 72 (140)
T PF04284_consen 59 VPIATGKIGFKDLL 72 (140)
T ss_pred ccccCCCcCHHHHH
Confidence 59999999999864
No 110
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.07 E-value=2.3e+02 Score=23.92 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=22.4
Q ss_pred ccccCCCCCCcccCcCCHHHHHHHHHHHHHHHHHHH
Q 015791 178 IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA 213 (400)
Q Consensus 178 ~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~l~ 213 (400)
-||.|+ -|.+=+-++..|.+..+.+..++++.++
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g 38 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLG 38 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHH
Confidence 477775 3556667888898877766665554443
No 111
>PRK10581 geranyltranstransferase; Provisional
Probab=26.06 E-value=54 Score=32.38 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCch-----------hhHhcCCccchhhhchhhHHHHH
Q 015791 296 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLC 333 (400)
Q Consensus 296 ~~~~~~ii~di~D~e-----------gD~~~GirTlpV~lG~k~a~~l~ 333 (400)
+.+++.+..|+.|+. .|.+.|+.|+|+.+|.+.+....
T Consensus 215 lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a 263 (299)
T PRK10581 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_pred HHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHH
Confidence 456678888998875 45778999999999988776543
No 112
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.76 E-value=3.8e+02 Score=25.32 Aligned_cols=29 Identities=10% Similarity=0.344 Sum_probs=21.7
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHHH
Q 015791 241 FLRWKTKPFLAGMCMVTVFGLVYQFSFFI 269 (400)
Q Consensus 241 plrlKr~~~~g~l~i~~~~g~~~~~G~~~ 269 (400)
-.|-||+.++..+.++.+|.++..+|+..
T Consensus 97 sv~~RkraVl~Dl~~SalwtflwfvGFc~ 125 (233)
T KOG4016|consen 97 SVKDRKRAVLADLGVSALWAFLWFVGFCF 125 (233)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888887788543
No 113
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=23.19 E-value=3e+02 Score=23.47 Aligned_cols=40 Identities=18% Similarity=0.025 Sum_probs=23.7
Q ss_pred ccccCCCCCCcccCcCCHHHHHHHHHHHHHHHH----HHHHHhchh
Q 015791 178 IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSL----AIALSLQSP 219 (400)
Q Consensus 178 ~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl----~l~~~lg~~ 219 (400)
-||.|+ .|.+=+-+|..|....+.+..++++ .+++..+++
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467775 3555566888888776655554444 344455554
No 114
>COG4125 Predicted membrane protein [Function unknown]
Probab=23.13 E-value=3.9e+02 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccc
Q 015791 155 KALLSAVLMNNYVGTVNQVADVEIDKV 181 (400)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~~D~e~D~i 181 (400)
++++.+........+.|-.+|+-.-|.
T Consensus 45 l~i~~atvAm~WN~vyN~lFd~~~rr~ 71 (149)
T COG4125 45 LTILSATVAMIWNFVYNLLFDRAERRM 71 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777788888765443
No 115
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.72 E-value=1.1e+02 Score=21.69 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhhcccccccc
Q 015791 159 SAVLMNNYVGTVNQVADVEIDK 180 (400)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~ 180 (400)
...|.-.+..++|.+.|.++|=
T Consensus 13 v~~Cl~lyl~ald~~CDQg~~F 34 (47)
T PRK10299 13 VLACLLLWAQVFNMMCDQDVQF 34 (47)
T ss_pred HHHHHHHHHHHHHHHhcCCccc
Confidence 3345558889999999998663
No 116
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.89 E-value=3.5e+02 Score=21.03 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=22.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHH
Q 015791 325 GKENVLRLCVYALFFAYGVSVIVGASSS-FQLVKLVSIIGHSTLA 368 (400)
Q Consensus 325 G~k~a~~l~~~l~~~ay~~~~~~g~~~~-~~~~~~~~~~g~~~l~ 368 (400)
|.|.+-.+.-.++.++.+++.+.|+... .......+++|.++.+
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~ 49 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTL 49 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665566666666666543 2222233444444333
Done!