Query 015791
Match_columns 400
No_of_seqs 273 out of 1894
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nx7_A Nematocyst outer WALL a 54.2 2.2 7.6E-05 25.1 -0.3 14 15-28 3-16 (28)
2 3m0g_A Farnesyl diphosphate sy 31.4 29 0.00099 32.8 3.3 41 296-336 208-259 (297)
3 3lsn_A Geranyltranstransferase 29.4 19 0.00064 34.3 1.5 41 296-336 215-266 (304)
4 3kra_B Geranyl diphosphate syn 28.3 81 0.0028 29.3 5.7 45 297-341 73-117 (274)
5 3ts7_A Geranyltranstransferase 27.9 18 0.00062 34.8 1.2 41 296-336 221-272 (324)
6 3lom_A Geranyltranstransferase 27.4 19 0.00066 34.4 1.2 41 296-336 222-273 (313)
7 4f62_A Geranyltranstransferase 25.1 25 0.00084 33.7 1.5 38 296-333 214-262 (317)
8 3p8r_A Geranyltranstransferase 24.0 30 0.001 32.8 1.9 39 297-335 222-271 (302)
9 3p8l_A Geranyltranstransferase 23.0 35 0.0012 32.4 2.1 42 292-333 214-266 (302)
10 2h8o_A Geranyltranstransferase 22.2 27 0.00094 33.6 1.2 52 156-210 110-163 (335)
11 3llw_A Geranyltranstransferase 20.6 36 0.0012 32.4 1.6 39 292-330 218-265 (311)
12 3uca_A Geranyltranstransferase 20.6 31 0.0011 33.1 1.2 38 296-333 243-291 (324)
No 1
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=54.20 E-value=2.2 Score=25.06 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=11.1
Q ss_pred ccccccccccCCCC
Q 015791 15 YYYPLQHAGCDKTL 28 (400)
Q Consensus 15 ~~~~~~~~~~~~~~ 28 (400)
.-|+|||.||..+-
T Consensus 3 npcslqqpgcssac 16 (28)
T 2nx7_A 3 NPCSLQQPGCSSAC 16 (28)
T ss_dssp CTHHHHSTTCCGGG
T ss_pred CCccccCCCccccc
Confidence 35899999998654
No 2
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=31.42 E-value=29 Score=32.85 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcCCchh-----------hHhcCCccchhhhchhhHHHHHHHH
Q 015791 296 ISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVYA 336 (400)
Q Consensus 296 ~~~~~~ii~di~D~eg-----------D~~~GirTlpV~lG~k~a~~l~~~l 336 (400)
+.+++.+..|+.|..+ |.+.|+.|+|+.+|.+.+....--+
T Consensus 208 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~ 259 (297)
T 3m0g_A 208 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADL 259 (297)
T ss_dssp HHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 4566788899999865 6678999999999999887654433
No 3
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=29.42 E-value=19 Score=34.30 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCCchh-----------hHhcCCccchhhhchhhHHHHHHHH
Q 015791 296 ISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVYA 336 (400)
Q Consensus 296 ~~~~~~ii~di~D~eg-----------D~~~GirTlpV~lG~k~a~~l~~~l 336 (400)
+.+++.+..|+.|..+ |.+.|+.|+|+.+|.+.+....--+
T Consensus 215 lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 266 (304)
T 3lsn_A 215 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALEL 266 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 3556677888888755 6678999999999999887654443
No 4
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=28.29 E-value=81 Score=29.28 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHH
Q 015791 297 SAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY 341 (400)
Q Consensus 297 ~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay 341 (400)
-.+..+-.|+++.++|.+.|+.|.=.++|...+....-.++..++
T Consensus 73 H~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 117 (274)
T 3kra_B 73 HAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGF 117 (274)
T ss_dssp HHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 344456789984445667999999999999887655555544444
No 5
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=27.92 E-value=18 Score=34.76 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcCCch-----------hhHhcCCccchhhhchhhHHHHHHHH
Q 015791 296 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCVYA 336 (400)
Q Consensus 296 ~~~~~~ii~di~D~e-----------gD~~~GirTlpV~lG~k~a~~l~~~l 336 (400)
+.+++.+..|+.|+. .|.+.|+.|+|+.+|.+.+....--+
T Consensus 221 lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 272 (324)
T 3ts7_A 221 IGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEM 272 (324)
T ss_dssp HHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 345566777776664 47788999999999999887654433
No 6
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=27.36 E-value=19 Score=34.37 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCCchh-----------hHhcCCccchhhhchhhHHHHHHHH
Q 015791 296 ISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVYA 336 (400)
Q Consensus 296 ~~~~~~ii~di~D~eg-----------D~~~GirTlpV~lG~k~a~~l~~~l 336 (400)
+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+....--+
T Consensus 222 lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~ 273 (313)
T 3lom_A 222 IGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVH 273 (313)
T ss_dssp HHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 3456677777777654 6788999999999999887654433
No 7
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=25.09 E-value=25 Score=33.72 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCc-----------hhhHhcCCccchhhhchhhHHHHH
Q 015791 296 ISAVMSLLKDIPDE-----------DGDKQFGFQSISSKLGKENVLRLC 333 (400)
Q Consensus 296 ~~~~~~ii~di~D~-----------egD~~~GirTlpV~lG~k~a~~l~ 333 (400)
+.+++.+..|+.|+ -.|.+.|+.|+|+.+|.+.+....
T Consensus 214 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a 262 (317)
T 4f62_A 214 IGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALV 262 (317)
T ss_dssp HHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHH
No 8
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=23.96 E-value=30 Score=32.80 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCch-----------hhHhcCCccchhhhchhhHHHHHHH
Q 015791 297 SAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCVY 335 (400)
Q Consensus 297 ~~~~~ii~di~D~e-----------gD~~~GirTlpV~lG~k~a~~l~~~ 335 (400)
..++.+..|+.|.. .|.+.|+.|+|+.+|.+.+....--
T Consensus 222 G~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~ 271 (302)
T 3p8r_A 222 GLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHT 271 (302)
T ss_dssp HHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHH
Confidence 44556666766654 4778899999999999888765433
No 9
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=22.97 E-value=35 Score=32.39 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCc-----------hhhHhcCCccchhhhchhhHHHHH
Q 015791 292 IISTISAVMSLLKDIPDE-----------DGDKQFGFQSISSKLGKENVLRLC 333 (400)
Q Consensus 292 ~~~~~~~~~~ii~di~D~-----------egD~~~GirTlpV~lG~k~a~~l~ 333 (400)
+---+.+++.+..|+.|. -.|.+.|+.|+|+.+|.+.+....
T Consensus 214 ~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~ 266 (302)
T 3p8l_A 214 FAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDAL 266 (302)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHH
No 10
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=22.16 E-value=27 Score=33.63 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhhc--ccccccccCCCCCCcccCcCCHHHHHHHHHHHHHHHH
Q 015791 156 ALLSAVLMNNYVGTVNQV--ADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSL 210 (400)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~--~D~e~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl 210 (400)
+..+.=++|.+.-+..|+ .|-+.=| +.+|-.........|...+=.++..++
T Consensus 110 ~A~aiEliH~asLIHDDiPamD~s~~R---RG~pt~h~~~G~~~AIlaGD~Ll~~A~ 163 (335)
T 2h8o_A 110 VGAALECLHCYSLVHDDLPAMDDDDLR---RGQPTVHRKFDEATAILAGDSLLTLAF 163 (335)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCSEE---TTEECHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCchhccCCCcC---CCCCcHhhhcChHHHHHHHHHHHHHHH
Confidence 344566889999999999 7765434 345554445566666655545544444
No 11
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=20.60 E-value=36 Score=32.43 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCchhhH---------hcCCccchhhhchhhHH
Q 015791 292 IISTISAVMSLLKDIPDEDGDK---------QFGFQSISSKLGKENVL 330 (400)
Q Consensus 292 ~~~~~~~~~~ii~di~D~egD~---------~~GirTlpV~lG~k~a~ 330 (400)
+.--+..++.+..|+.|..+|. +.|+.|+|+.+|.+++.
T Consensus 218 ~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~ 265 (311)
T 3llw_A 218 FGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERAN 265 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHH
No 12
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=20.59 E-value=31 Score=33.09 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCc-----------hhhHhcCCccchhhhchhhHHHHH
Q 015791 296 ISAVMSLLKDIPDE-----------DGDKQFGFQSISSKLGKENVLRLC 333 (400)
Q Consensus 296 ~~~~~~ii~di~D~-----------egD~~~GirTlpV~lG~k~a~~l~ 333 (400)
+.+++.+..|+.|+ -.|.+.|+.|+|+.+|.+.+....
T Consensus 243 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a 291 (324)
T 3uca_A 243 LGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKC 291 (324)
T ss_dssp HHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHH
Done!