Query 015791
Match_columns 400
No_of_seqs 273 out of 1894
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 18:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015791.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015791hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 73.4 7.6 0.00056 34.2 9.7 56 156-212 66-121 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 29.8 29 0.0021 30.3 5.2 47 295-341 75-122 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 22.0 50 0.0036 28.5 5.3 46 296-341 73-119 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 19.3 16 0.0012 32.1 1.2 57 155-212 68-124 (299)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 13.1 1.6E+02 0.012 23.4 6.1 14 160-173 104-117 (199)
6 d1omca_ g.3.6.1 (A:) Conotoxin 12.1 37 0.0027 18.3 1.0 14 66-79 9-24 (27)
7 d2j7ja2 g.37.1.1 (A:29-57) Tra 11.9 22 0.0016 19.9 -0.1 14 20-33 7-20 (29)
8 d1v4ea_ a.128.1.1 (A:) Octopre 10.7 97 0.007 26.3 4.0 45 295-340 64-108 (280)
9 d2q80a1 a.128.1.1 (A:6-296) Ge 9.7 40 0.0029 29.2 0.9 29 296-324 175-214 (291)
10 d2cosa1 a.5.2.1 (A:8-48) Serin 9.7 5.4 0.00039 24.3 -3.5 21 18-38 8-28 (41)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=73.44 E-value=7.6 Score=34.22 Aligned_cols=56 Identities=7% Similarity=0.062 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHHHHHHHHHHHH
Q 015791 156 ALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212 (400)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~l 212 (400)
...+.=++|.+.-+..|+.|.|.|.. ++.+|-.........|...+-.+...++-+
T Consensus 66 ~A~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 66 SAIALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 34466789999999999988877653 345555555566666666655555545443
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=29.81 E-value=29 Score=30.33 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCchh-hHhcCCccchhhhchhhHHHHHHHHHHHHH
Q 015791 295 TISAVMSLLKDIPDEDG-DKQFGFQSISSKLGKENVLRLCVYALFFAY 341 (400)
Q Consensus 295 ~~~~~~~ii~di~D~eg-D~~~GirTlpV~lG~k~a~~l~~~l~~~ay 341 (400)
++-.+..+-.|++|.+. |.++|..|.-..+|...+....-.++..++
T Consensus 75 llH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~ 122 (299)
T d1rqja_ 75 CIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHH
Confidence 34445566789998887 489999999999999988766555544443
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=21.98 E-value=50 Score=28.48 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCchhh-HhcCCccchhhhchhhHHHHHHHHHHHHH
Q 015791 296 ISAVMSLLKDIPDEDGD-KQFGFQSISSKLGKENVLRLCVYALFFAY 341 (400)
Q Consensus 296 ~~~~~~ii~di~D~egD-~~~GirTlpV~lG~k~a~~l~~~l~~~ay 341 (400)
+-.+..+-.|++|+++| .+.|+.|.-.++|...+....-.++..++
T Consensus 73 lH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~ 119 (290)
T d1rtra_ 73 IHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAF 119 (290)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHH
Confidence 33444567899988775 69999999999999888665554444443
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=19.34 E-value=16 Score=32.10 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHHHHHHHHHHHH
Q 015791 155 KALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212 (400)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~l 212 (400)
-+..+.=++|.+.-+..|+.|.|-|.. ++.+|-.-.......|...+-.+...++-+
T Consensus 68 ~~A~aiEllH~asLiHDDI~d~d~~~~-RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 68 APAAAVECIHAYSLIHDDLPAMDDDDL-RRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCCE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhhhhhc-ccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 345577789999999999998876532 234444444555666666555555444433
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.13 E-value=1.6e+02 Score=23.43 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhhhc
Q 015791 160 AVLMNNYVGTVNQV 173 (400)
Q Consensus 160 ~~l~~~a~~~iNd~ 173 (400)
......+.+...++
T Consensus 104 gi~vd~~i~i~~~~ 117 (199)
T d1iwga7 104 GLLVDDAIVVVENV 117 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHH
Confidence 33344444444443
No 6
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=12.15 E-value=37 Score=18.30 Aligned_cols=14 Identities=29% Similarity=0.830 Sum_probs=8.1
Q ss_pred CCCCc--ccCCCCCcc
Q 015791 66 NENTS--SRNCKPFNK 79 (400)
Q Consensus 66 ~~~~~--~~~~~~~~~ 79 (400)
.+++| |+.|||+.|
T Consensus 9 sptsynccrscnpytk 24 (27)
T d1omca_ 9 SPTSYNCCRSCNPYTK 24 (27)
T ss_dssp CTTTTCBSSCEETTTT
T ss_pred CCcccchhcccCcccc
Confidence 34444 677777654
No 7
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=11.95 E-value=22 Score=19.93 Aligned_cols=14 Identities=50% Similarity=1.025 Sum_probs=11.4
Q ss_pred cccccCCCCCcccc
Q 015791 20 QHAGCDKTLQLPLT 33 (400)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (400)
.|.|||+.-.+|-|
T Consensus 7 ~hegcdk~fs~ps~ 20 (29)
T d2j7ja2 7 PHEGCDKRFSLPSR 20 (29)
T ss_dssp CSTTCCCEESSHHH
T ss_pred CccCccccccCHHH
Confidence 48999998888854
No 8
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=10.69 E-value=97 Score=26.35 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHH
Q 015791 295 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (400)
Q Consensus 295 ~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~a 340 (400)
++-.+..+-.|+.| ++|.++|..|.-..+|...+....-.++..+
T Consensus 64 liH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a 108 (280)
T d1v4ea_ 64 LVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSA 108 (280)
T ss_dssp HHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhh
Confidence 33344456677777 5678999999999999988866554444333
No 9
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.68 E-value=40 Score=29.18 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCch-----------hhHhcCCccchhhh
Q 015791 296 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKL 324 (400)
Q Consensus 296 ~~~~~~ii~di~D~e-----------gD~~~GirTlpV~l 324 (400)
+.+++.+..|+.|.. .|.+.|+.|+|+.+
T Consensus 175 lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~ 214 (291)
T d2q80a1 175 LGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIH 214 (291)
T ss_dssp HHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHhhhhccchhhccccccchhccCCCcHHHHH
No 10
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.68 E-value=5.4 Score=24.28 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=13.1
Q ss_pred cccccccCCCCCcccccccCc
Q 015791 18 PLQHAGCDKTLQLPLTKVHGG 38 (400)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~ 38 (400)
.||++|||+....-.-+-.|+
T Consensus 8 dl~~aG~D~~m~iral~qt~~ 28 (41)
T d2cosa1 8 ELVNAGCDQEMAGRALKQTGS 28 (41)
T ss_dssp HHHHHHCCHHHHHHHHHHHTS
T ss_pred HHHHcCCCHHHHHHHHHHhCc
Confidence 478999998655443333343
Done!