Query 015792
Match_columns 400
No_of_seqs 234 out of 364
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 2E-128 5E-133 951.7 27.5 353 1-400 1-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 4E-85 8.6E-90 627.2 17.5 245 116-394 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 2.1E-19 4.4E-24 184.6 4.5 77 308-394 485-561 (565)
4 PF12937 F-box-like: F-box-lik 97.8 8.9E-06 1.9E-10 58.9 1.2 35 52-94 1-35 (47)
5 PF00646 F-box: F-box domain; 97.6 9.1E-06 2E-10 58.4 -0.8 39 51-97 2-40 (48)
6 PLN03215 ascorbic acid mannose 97.4 0.00036 7.7E-09 71.9 7.7 40 50-96 2-41 (373)
7 smart00256 FBOX A Receptor for 97.1 7.8E-05 1.7E-09 51.2 -0.5 33 55-95 1-33 (41)
8 PF12043 DUF3527: Domain of un 96.7 0.0019 4.1E-08 65.9 5.0 58 332-395 287-344 (346)
9 KOG2997 F-box protein FBX9 [Ge 89.4 0.17 3.8E-06 51.6 1.4 43 49-94 101-146 (366)
10 KOG2120 SCF ubiquitin ligase, 58.4 2.9 6.3E-05 43.1 -0.3 67 52-126 98-167 (419)
11 PF12043 DUF3527: Domain of un 37.4 1.8E+02 0.004 30.3 8.7 73 120-201 6-108 (346)
12 PF04525 Tub_2: Tubby C 2; In 25.2 2.2E+02 0.0049 26.0 6.5 78 121-201 62-144 (187)
13 PF14642 FAM47: FAM47 family 22.0 30 0.00064 34.6 -0.0 36 53-98 139-177 (258)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=2.2e-128 Score=951.73 Aligned_cols=353 Identities=58% Similarity=0.941 Sum_probs=309.0
Q ss_pred CchhhhhhhhccccCcceecceeeeecccCCcccceecccccccccccCCccCCCChHHHHHHHHhhhhcCCCCCCccce
Q 015792 1 MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNV 80 (400)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~v 80 (400)
|+++++++++++.. +++..........+..+++.. .+.....+.|++||||||+|+|+|+|++|+.||+|++|
T Consensus 1 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~r~~v 73 (355)
T KOG2502|consen 1 MGEDGPVRDPEDKS------SFRAPQGSGTKGPEDKSEDSG-FPSPSDQSLWAALPPELLSDVLKRDEESEDTWPSRRNV 73 (355)
T ss_pred CCccCccCCCCccc------chhcccccccccCCCccCCcC-CccccccchhhcCCHhHHHHHhhhcccccccccccccc
Confidence 78999999998876 444444322111233333331 11111228999999999999999999999999999999
Q ss_pred eeecccChhHHHHHHHHhcCccccceeeccccccCCCCCCceEEEEEEEeccCCeEEEEeecccCCC--CCCceEEEEEe
Q 015792 81 VACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN--DDGKFLLAARK 158 (400)
Q Consensus 81 v~ca~vc~~wr~~~~eiv~~pe~~g~ltFpisLkqPgPrd~~iqC~IkR~k~~~tY~Lyl~l~~~~~--~~gkfLLaArK 158 (400)
|+||+||+.||++++|||++|+.++++|||++|+||||+|.++||+|+|||+|++|+||++|.+++. |++||||||||
T Consensus 74 vs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaark 153 (355)
T KOG2502|consen 74 VSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAARK 153 (355)
T ss_pred ccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999998753 77999999999
Q ss_pred cCCCCcceEEEEecCCCCCCCCcceeeEeeeceeecEEEEecCCCCCcccccccccccccccccccCccccCccEeEEEE
Q 015792 159 CRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHI 238 (400)
Q Consensus 159 ~rr~~tSnYiISld~~dlSr~S~~yvGKLRSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V 238 (400)
+||+||+|||||+|++||||++++||||||||||||||||||+|.++. |.++ ++|+++|+||+|
T Consensus 154 ~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~~----------r~~~------~~~~~~~~la~V 217 (355)
T KOG2502|consen 154 RRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNPS----------RRFN------KVPSGRQELAAV 217 (355)
T ss_pred ecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCcc----------cccc------cCCcccceeeEE
Confidence 999999999999999999999999999999999999999999986543 2333 688999999999
Q ss_pred EEEeeccCCCCCceeeEeeccCCccccCCCCCCCCccccccCCCCCCCCcccccccchhhcccccccccceEEEecCCCc
Q 015792 239 SYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPR 318 (400)
Q Consensus 239 ~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~~gg~~p~q~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~lvL~nK~P~ 318 (400)
+||+||||+||||||+|+||+||.++ ++|.+|.|++..+.. .+ ++ +.+..++++++|+||+|+
T Consensus 218 ~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l--~r--------~~~k~~e~~lvL~NK~P~ 280 (355)
T KOG2502|consen 218 IYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL--FR--------SQNKDKEGLLVLKNKTPR 280 (355)
T ss_pred EEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh--hh--------ccccCcccceEeecCCCc
Confidence 99999999999999999999999987 899999987654421 01 11 112346899999999999
Q ss_pred ccccccceEeccCCceeccccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccc
Q 015792 319 WHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIA 398 (400)
Q Consensus 319 w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlA 398 (400)
|||++||||||||||||+||||||||||.. ++++|||||||||+|+|||||+||||+||||||||||||||||
T Consensus 281 wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKla 353 (355)
T KOG2502|consen 281 WNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLA 353 (355)
T ss_pred cccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999985 5699999999999999999999999999999999999999999
Q ss_pred cC
Q 015792 399 CE 400 (400)
Q Consensus 399 CE 400 (400)
||
T Consensus 354 Ce 355 (355)
T KOG2502|consen 354 CE 355 (355)
T ss_pred CC
Confidence 98
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=4e-85 Score=627.23 Aligned_cols=245 Identities=55% Similarity=0.915 Sum_probs=185.4
Q ss_pred CCCCCceEEEEEEEeccCCeEEEEeecccCC-CCCCceEEEEEecCCCCcceEEEEecCCCCCCCCcceeeEeeeceeec
Q 015792 116 PGPRGSLLQCYIKRNRSSQTYYLYLGLNQSS-NDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGT 194 (400)
Q Consensus 116 PgPrd~~iqC~IkR~k~~~tY~Lyl~l~~~~-~~~gkfLLaArK~rr~~tSnYiISld~~dlSr~S~~yvGKLRSNflGT 194 (400)
|||+|++|||+|+|||+|++|+||+.++..+ .++++|||||||+++++||||||||+++|+||++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 8999999999999999998776666665543 478999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCcccccccccccccccccccCccccCccEeEEEEEEEeeccCCCCCceeeEeeccCCccccCCCCCCCCc
Q 015792 195 KFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQ 274 (400)
Q Consensus 195 kFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~~gg~~p~q 274 (400)
+|+|||+|++++.+. ..+|..+..++|||+|.||+||||++|||||+|+||+|+....++++..|.+
T Consensus 81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~ 147 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ 147 (246)
T ss_dssp EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence 999999999876543 2256777889999999999999999999999999999998877666655543
Q ss_pred cccccCCCCCCCCcccccccchhhcccccccccceEEEecCCCcccccccceEeccCCceeccccceeEEEecccCCcCC
Q 015792 275 TEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAG 354 (400)
Q Consensus 275 ~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~~~~~~ 354 (400)
.. ..+.-..+ ........+++++|+||+|+|||+++||||||+||||+|||||||||++.
T Consensus 148 p~----~~~~~~~~----------~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~------ 207 (246)
T PF01167_consen 148 PL----NQEKDSLL----------SRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPS------ 207 (246)
T ss_dssp -S----S-CCCSHH----------HHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTT------
T ss_pred cc----cccccccc----------ccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccC------
Confidence 21 10100001 00113356789999999999999999999999999999999999999974
Q ss_pred CCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCc
Q 015792 355 QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 394 (400)
Q Consensus 355 ~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfD 394 (400)
+++++|||||||++|+|+|||+|||||+|||||||||||
T Consensus 208 -~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 208 -DPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp -BTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred -CCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 688999999999999999999999999999999999998
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.76 E-value=2.1e-19 Score=184.65 Aligned_cols=77 Identities=43% Similarity=0.742 Sum_probs=71.6
Q ss_pred ceEEEecCCCcccccccceEeccCCceeccccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHH
Q 015792 308 GLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFA 387 (400)
Q Consensus 308 ~~lvL~nK~P~w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFa 387 (400)
+..++.||+|-|||+.|-|+|||.||||+.|.||||+-.. .+-|||||+|+.+.|++||+||+|+.||||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa 554 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA 554 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence 4569999999999999999999999999999999999764 467899999999999999999999999999
Q ss_pred HHHHhCc
Q 015792 388 ICLSSFD 394 (400)
Q Consensus 388 I~LssfD 394 (400)
+||++.-
T Consensus 555 valanvt 561 (565)
T KOG2503|consen 555 VALANVT 561 (565)
T ss_pred HHHhhhh
Confidence 9999853
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.78 E-value=8.9e-06 Score=58.86 Aligned_cols=35 Identities=26% Similarity=0.667 Sum_probs=30.0
Q ss_pred cCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHH
Q 015792 52 WANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIM 94 (400)
Q Consensus 52 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~ 94 (400)
|..||+|+|.+|+..++.. ++..|+.|||.|++++
T Consensus 1 i~~LP~Eil~~If~~L~~~--------dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPR--------DLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HH--------HHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHH
Confidence 7899999999999888543 7999999999999997
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.61 E-value=9.1e-06 Score=58.44 Aligned_cols=39 Identities=18% Similarity=0.526 Sum_probs=31.9
Q ss_pred ccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHHHH
Q 015792 51 CWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEI 97 (400)
Q Consensus 51 ~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ei 97 (400)
.|.+||+|++.+|+.+++-.+ +++|+.||+.|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~--------~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKD--------LLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHH--------HHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHH--------HHHHHHHhhHHHHHHcCC
Confidence 488999999999999997754 999999999999998654
No 6
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.43 E-value=0.00036 Score=71.85 Aligned_cols=40 Identities=28% Similarity=0.601 Sum_probs=37.2
Q ss_pred CccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHHH
Q 015792 50 SCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (400)
Q Consensus 50 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (400)
..|+.||+|||+.|..|+ |++-+++--++||++||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhccc
Confidence 369999999999999999 9999999999999999998764
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.15 E-value=7.8e-05 Score=51.16 Aligned_cols=33 Identities=33% Similarity=0.878 Sum_probs=29.6
Q ss_pred CChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHH
Q 015792 55 MPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (400)
Q Consensus 55 ~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (400)
||+|++.+|+.++ |. ++..+|+.||+.||.+++
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhc
Confidence 7999999999998 44 789999999999999874
No 8
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=96.72 E-value=0.0019 Score=65.89 Aligned_cols=58 Identities=19% Similarity=0.454 Sum_probs=47.1
Q ss_pred CceeccccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCcc
Q 015792 332 GRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT 395 (400)
Q Consensus 332 GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDt 395 (400)
.+.+.+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||++|||+||++-.++
T Consensus 287 ~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~ 344 (346)
T PF12043_consen 287 SSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS 344 (346)
T ss_pred cccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence 45556677778987652 23444899999999999999999999999999999987654
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=89.35 E-value=0.17 Score=51.59 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=33.5
Q ss_pred CCccCC---CChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHH
Q 015792 49 QSCWAN---MPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIM 94 (400)
Q Consensus 49 ~~~w~~---~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~ 94 (400)
|++|-+ ||+|+|..|+++|=.+- =.-++.+.||+||+.|+-.+
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHH
Confidence 778866 99999999999996432 12366789999999876554
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=58.39 E-value=2.9 Score=43.12 Aligned_cols=67 Identities=22% Similarity=0.519 Sum_probs=51.7
Q ss_pred cCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHHH--HhcCccccceeeccccccCCCCCCc-eEEEE
Q 015792 52 WANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE--IVKTLEVSGKLTFPISLKQPGPRGS-LLQCY 126 (400)
Q Consensus 52 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e--iv~~pe~~g~ltFpisLkqPgPrd~-~iqC~ 126 (400)
|..||.|+|.+|.. |=.-+....-|+||++|-.+..+ .-.+.+..|+---|++|-|=..|+. .++|-
T Consensus 98 ~~slpDEill~IFs--------~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 98 WDSLPDEILLGIFS--------CLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred cccCCHHHHHHHHH--------hccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 99999999999986 55678889999999999887643 3356677777777777776666664 55554
No 11
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=37.43 E-value=1.8e+02 Score=30.33 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=41.1
Q ss_pred CceEEEEEEEeccCCeEEEEeecccCCCCCCceEEEEEecCCC----CcceEE--EEecC----C---CCC-----CCCc
Q 015792 120 GSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRP----TCTDYI--ISLNC----D---DVS-----KGSS 181 (400)
Q Consensus 120 d~~iqC~IkR~k~~~tY~Lyl~l~~~~~~~gkfLLaArK~rr~----~tSnYi--ISld~----~---dlS-----r~S~ 181 (400)
-+.+||.+| .+.+-|.+-+ ++.+=.|||+-++.. ...+|+ +-.-. . -++ +...
T Consensus 6 qalLq~t~K--NG~P~F~Fsv-------d~~~~VlaAt~~k~~~~~~~~~~~vYTFhs~~e~KKks~~w~~~~~k~k~~~ 76 (346)
T PF12043_consen 6 QALLQCTWK--NGLPLFEFSV-------DNPEEVLAATMWKSGSSDKNDLNWVYTFHSIKEVKKKSGSWINSGDKNKSSS 76 (346)
T ss_pred eEEEEEEEe--CCeEEEEEEe-------CCcccEEEEEEeecccccccccceEEEEEeeccccccccccccccccccCCc
Confidence 467888877 3335555444 344567777766544 333443 33311 1 121 2234
Q ss_pred ceeeEee-ec----------e-eecEEEEecC
Q 015792 182 TYIGRLR-SN----------F-LGTKFTIYDG 201 (400)
Q Consensus 182 ~yvGKLR-SN----------f-lGTkFtIYD~ 201 (400)
+-||+++ |. . +-|||++||.
T Consensus 77 ~iVGQMkVSss~~~~~~~~~~s~~~EFVLf~~ 108 (346)
T PF12043_consen 77 NIVGQMKVSSSLSSEPSKQGSSMVTEFVLFGV 108 (346)
T ss_pred ceEEEEEeeeeeeecccCCcceeEEEEEEEec
Confidence 7999987 22 2 6679999994
No 12
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=25.24 E-value=2.2e+02 Score=26.04 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=31.0
Q ss_pred ceEEEEEEEeccC--CeEEEEeecccCCCCCCceEEEEEecC-CCCcceEEEEecCC-CCC-CCCcceeeEeeeceeecE
Q 015792 121 SLLQCYIKRNRSS--QTYYLYLGLNQSSNDDGKFLLAARKCR-RPTCTDYIISLNCD-DVS-KGSSTYIGRLRSNFLGTK 195 (400)
Q Consensus 121 ~~iqC~IkR~k~~--~tY~Lyl~l~~~~~~~gkfLLaArK~r-r~~tSnYiISld~~-dlS-r~S~~yvGKLRSNflGTk 195 (400)
|..-..|+|..-+ ++|..|.+-. .++.+.+...||.. -...++..+.+.+. ..+ -.+..--=+|+.||++-.
T Consensus 62 G~~L~~i~~k~~~l~~~w~i~~~~~---~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~ 138 (187)
T PF04525_consen 62 GNPLFTIRRKLFSLRPTWEIYRGGG---SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRS 138 (187)
T ss_dssp S-EEEEEE--------EEEEEETT------GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT-
T ss_pred CCEEEEEEeeecccceEEEEEECCC---CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcE
Confidence 4555677774333 5899997421 22345677777761 12223334444322 110 112223346899999999
Q ss_pred EEEecC
Q 015792 196 FTIYDG 201 (400)
Q Consensus 196 FtIYD~ 201 (400)
|+|||.
T Consensus 139 ~~I~~~ 144 (187)
T PF04525_consen 139 FTIYDS 144 (187)
T ss_dssp -EEEEC
T ss_pred EEEEEc
Confidence 999973
No 13
>PF14642 FAM47: FAM47 family
Probab=22.04 E-value=30 Score=34.59 Aligned_cols=36 Identities=36% Similarity=0.688 Sum_probs=25.5
Q ss_pred CCCChHHHHHHHHhhhhc---CCCCCCccceeeecccChhHHHHHHHHh
Q 015792 53 ANMPPELLRDVLLRIEAS---ETTWPPRKNVVACAGVCRSWREIMKEIV 98 (400)
Q Consensus 53 ~~~~~ell~~~~~r~e~~---~~~wp~r~~vv~ca~vc~~wr~~~~eiv 98 (400)
..||||||.+|++=|+-. |++| +-|.-+|..++|-.
T Consensus 139 E~mPpdLll~VLevLDPerkLed~w----------a~cE~~ek~t~ept 177 (258)
T PF14642_consen 139 EDMPPDLLLKVLEVLDPERKLEDTW----------AYCEGREKTTKEPT 177 (258)
T ss_pred ccCCHHHHHHHHhccCcccchhhhh----------hhhcccccccCCCc
Confidence 468999999999977533 4666 34666777766544
Done!