Query 015792
Match_columns 400
No_of_seqs 234 out of 364
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 18:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015792.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015792hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c8za_ d.23.1.1 (A:) Transcri 100.0 2.9E-85 2.1E-89 630.4 21.7 253 103-400 7-265 (265)
2 d1fs1a1 a.158.1.1 (A:109-149) 98.0 9.5E-07 6.9E-11 60.4 2.0 36 52-95 1-36 (41)
3 d2ovrb1 a.158.1.1 (B:2263-2364 97.0 7.3E-05 5.3E-09 58.5 1.0 41 47-95 14-54 (102)
4 d1nexb1 a.158.1.1 (B:270-369) 96.8 7.9E-05 5.8E-09 58.7 -0.3 39 49-95 3-41 (100)
5 d1p22a1 a.158.1.1 (A:135-252) 95.0 0.0024 1.7E-07 51.1 0.5 41 48-96 7-51 (118)
6 d2q4ma1 d.23.1.2 (A:24-212) Hy 28.4 65 0.0047 26.3 7.0 74 122-201 63-139 (189)
7 d1smxa_ b.40.4.5 (A:) S1-domai 20.4 1.3E+02 0.0093 21.9 6.5 71 180-252 1-78 (87)
8 d2iqia1 c.51.6.2 (A:32-209) Hy 16.0 28 0.0021 28.1 1.9 27 44-70 48-75 (178)
9 d1ddga1 b.43.4.1 (A:226-446) S 15.2 38 0.0027 28.5 2.6 59 51-131 142-218 (221)
10 d1lqla_ d.227.1.1 (A:) Hypothe 15.0 60 0.0044 25.0 3.6 36 335-393 17-52 (141)
No 1
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=2.9e-85 Score=630.40 Aligned_cols=253 Identities=40% Similarity=0.712 Sum_probs=210.2
Q ss_pred ccceeeccccccCCCCCCceEEEEEEEeccCC------eEEEEeecccCCCCCCceEEEEEecCCCCcceEEEEecCCCC
Q 015792 103 VSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDV 176 (400)
Q Consensus 103 ~~g~ltFpisLkqPgPrd~~iqC~IkR~k~~~------tY~Lyl~l~~~~~~~gkfLLaArK~rr~~tSnYiISld~~dl 176 (400)
+..+..| |.||||+|++|||+|+|||+|+ +|+|||+. ..++++|||||||+|+++++|||||+|++|+
T Consensus 7 ~~~~~~F---l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~---~~gk~kfLLaArK~r~~~~~~yiIS~~~~d~ 80 (265)
T d1c8za_ 7 VQDLEEF---ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDR---EDGKKVFLLAGRKRKKSKTSNYLISVDPTDL 80 (265)
T ss_dssp CCSHHHH---HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEEC---TTSCEEEEEEEEEEESSSSEEEEEESCHHHH
T ss_pred hhhHHHH---hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEcc---CCCceeEEEEEeeecCCCcceEEEEccHHHh
Confidence 3445567 9999999999999999999875 57778753 2345679999999999999999999999999
Q ss_pred CCCCcceeeEeeeceeecEEEEecCCCCCcccccccccccccccccccCccccCccEeEEEEEEEeeccCCCCCceeeEe
Q 015792 177 SKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCV 256 (400)
Q Consensus 177 Sr~S~~yvGKLRSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~~ 256 (400)
||+|++|||||||||+||+|+|||+|.+++.+... ++...+.++|||+|+||+||||++|||+|+|+
T Consensus 81 sr~s~~yvGKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ 147 (265)
T d1c8za_ 81 SRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVI 147 (265)
T ss_dssp TTTCCCCSEEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEE
T ss_pred cccccceeEEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEE
Confidence 99999999999999999999999999888765422 12223457899999999999999999999999
Q ss_pred eccCCccccCCCCCCCCccccccCCCCCCCCcccccccchhhcccccccccceEEEecCCCcccccccceEeccCCceec
Q 015792 257 MDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTV 336 (400)
Q Consensus 257 m~~Ip~s~i~~gg~~p~q~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~GRVt~ 336 (400)
||.++...... .+.+..+ .-..+. .+.+...+++++|+||+|+||++++||+|||+||||+
T Consensus 148 ip~~~~~~~~~--------~~~p~~~-~~~~~~----------~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~ 208 (265)
T d1c8za_ 148 VPGMNMVHERV--------CIRPRNE-HETLLA----------RWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQ 208 (265)
T ss_dssp EECBCTTSCBC--------CCCCSST-TSSHHH----------HHHTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEE
T ss_pred ecCCCcccccc--------ccCCCCc-chhhhH----------HhhccCcccceEEecCCCeeeccCCEEEeccCCEEec
Confidence 98876432110 1111111 000111 1123456889999999999999999999999999999
Q ss_pred cccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccccC
Q 015792 337 ASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 400 (400)
Q Consensus 337 aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlACE 400 (400)
|||||||||++. +++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus 209 ~SvKNFql~~~~-------~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace 265 (265)
T d1c8za_ 209 ASVKNFQIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265 (265)
T ss_dssp CBTTEEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred cccceEEEEeCC-------CCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence 999999999864 678899999999999999999999999999999999999999998
No 2
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.99 E-value=9.5e-07 Score=60.42 Aligned_cols=36 Identities=25% Similarity=0.704 Sum_probs=32.1
Q ss_pred cCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHH
Q 015792 52 WANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (400)
Q Consensus 52 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (400)
|.+||.|+|..|+..+. -++++.|+.|||+|++++.
T Consensus 1 f~~LP~eil~~If~~L~--------~~dl~~~~~Vcr~w~~l~~ 36 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLC--------LPELLKVSGVCKRWYRLAS 36 (41)
T ss_dssp CCSSCHHHHHHHHTTSC--------GGGHHHHHTTCHHHHHHHT
T ss_pred CCcCCHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHhC
Confidence 88999999999999993 3568899999999999873
No 3
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.01 E-value=7.3e-05 Score=58.47 Aligned_cols=41 Identities=32% Similarity=0.574 Sum_probs=35.2
Q ss_pred ccCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHH
Q 015792 47 FKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (400)
Q Consensus 47 ~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (400)
.+.+-=+.||+|+|..|+..|+. +++++||.||+.|++++.
T Consensus 14 ~~~D~i~~LP~Eil~~Ils~Ld~--------~dL~~~~~vcr~w~~l~~ 54 (102)
T d2ovrb1 14 FQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE 54 (102)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred hccCChhhCCHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHC
Confidence 45566788999999999999954 688999999999999874
No 4
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.81 E-value=7.9e-05 Score=58.67 Aligned_cols=39 Identities=15% Similarity=0.479 Sum_probs=32.9
Q ss_pred CCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHH
Q 015792 49 QSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (400)
Q Consensus 49 ~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (400)
.+-.+.||+||+..|+..|+ . +++++||.||++|+.++.
T Consensus 3 ~D~~~~LP~Ell~~I~s~Ld-------~-~dL~~~s~Vcr~W~~~~~ 41 (100)
T d1nexb1 3 RDLITSLPFEISLKIFNYLQ-------F-EDIINSLGVSQNWNKIIR 41 (100)
T ss_dssp CCHHHHSCHHHHHHHHTTSC-------H-HHHHHHTTTCHHHHHHHH
T ss_pred CCchhhCCHHHHHHHHHCCC-------H-HHHHHHHHHHHHHHHHHH
Confidence 34467899999999999993 3 689999999999999863
No 5
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.98 E-value=0.0024 Score=51.13 Aligned_cols=41 Identities=20% Similarity=0.545 Sum_probs=32.8
Q ss_pred cCCccCCCC----hHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHHH
Q 015792 48 KQSCWANMP----PELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (400)
Q Consensus 48 ~~~~w~~~~----~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (400)
+.+-=++|| +|++..|+.-|+. +++..||.||+.|++++.+
T Consensus 7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~--------~dL~~~s~Vck~W~~l~~d 51 (118)
T d1p22a1 7 QRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (118)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred cccHHHHCCCCChHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence 334445666 5999999999865 6799999999999999864
No 6
>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.39 E-value=65 Score=26.28 Aligned_cols=74 Identities=15% Similarity=0.290 Sum_probs=41.2
Q ss_pred eEEEEEEEeccC--CeEEEEeecccCCCCCCceEEEEEecCC-CCcceEEEEecCCCCCCCCcceeeEeeeceeecEEEE
Q 015792 122 LLQCYIKRNRSS--QTYYLYLGLNQSSNDDGKFLLAARKCRR-PTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTI 198 (400)
Q Consensus 122 ~iqC~IkR~k~~--~tY~Lyl~l~~~~~~~gkfLLaArK~rr-~~tSnYiISld~~dlSr~S~~yvGKLRSNflGTkFtI 198 (400)
..-..|+|..-+ .+|..|++- ..+..+.+...||... ...+++-|.+....- .....| +++.||++-.|+|
T Consensus 63 ~~L~~i~~k~~s~~~~w~v~~~~---~~~~~~~~~~~kk~~~~~~~~~~~v~~~~~~~-~~~~~~--~i~G~~~~~~~~i 136 (189)
T d2q4ma1 63 TPVVTLREKMVSMHDRWQVFRGG---STDQRDLLYTVKRSSMLQLKTKLDVFLGHNKD-EKRCDF--RVKGSWLERSCVV 136 (189)
T ss_dssp CEEEEEEC------CEEEEEETT---CCCGGGEEEEEEC-------CCEEEEETTCCC--CCCSE--EEESCTTTTCCEE
T ss_pred CEEEEEEeeccccCceEEEEECC---CCCccceEEEEEeeeeeeccccEEEEeccCCC-CCcceE--EEEeeeccceEEE
Confidence 334666655433 579999852 1344566777776533 235677777654322 123345 7888999999999
Q ss_pred ecC
Q 015792 199 YDG 201 (400)
Q Consensus 199 YD~ 201 (400)
||.
T Consensus 137 ~~~ 139 (189)
T d2q4ma1 137 YAG 139 (189)
T ss_dssp EEG
T ss_pred EEC
Confidence 974
No 7
>d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]}
Probab=20.36 E-value=1.3e+02 Score=21.95 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=36.4
Q ss_pred CcceeeEeeeceeecEEEEecCCCCCcccccccc-------cccccccccccCccccCccEeEEEEEEEeeccCCCCCce
Q 015792 180 SSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKC-------RSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRR 252 (400)
Q Consensus 180 S~~yvGKLRSNflGTkFtIYD~g~p~~~a~~~~~-------rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRr 252 (400)
||-|+||+..-.-|-+=-+-|-|...++-...+. ........+.+.-.+-.|..-|.||.=|. .|++|||-
T Consensus 1 ~NIY~G~V~~V~pgl~AAFVDiG~~k~gFL~~~di~~~~~~~~~~~~~~~~i~~~l~~G~~ilVQV~Ke~--~~~KGprl 78 (87)
T d1smxa_ 1 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEE--RGNKGAAL 78 (87)
T ss_dssp CCCEEEEEEEEEGGGTEEEEESSSSSCEEEEGGGSCGGGCSSCCCSSSCCCGGGTCCTTCEEEEEEEECC--BTTBCCEE
T ss_pred CCcEEEEEEEecCCceEEEEEeCCCccceeEecccceeeeccccccccccchhhhccCCCeEEEEEeecc--cCCCCceE
Confidence 4679999986554444333344432222111000 00000111223333456778889999886 68999974
No 8
>d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=16.00 E-value=28 Score=28.06 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=21.7
Q ss_pred cccccCCccCCCChHHHHHHHHh-hhhc
Q 015792 44 VDAFKQSCWANMPPELLRDVLLR-IEAS 70 (400)
Q Consensus 44 ~~~~~~~~w~~~~~ell~~~~~r-~e~~ 70 (400)
.......+|+..|+++|+++|.+ |+.+
T Consensus 48 l~~~~~~rWa~~~~~~l~~~L~~~L~~~ 75 (178)
T d2iqia1 48 LQVYHGAGWAQPATDMLEDSVVRAFEDS 75 (178)
T ss_dssp CEECTTEEESSCHHHHHHHHHHHHHHTT
T ss_pred EeeccCCccccCHHHHHHHHHHHHHHhc
Confidence 35567899999999999998866 6553
No 9
>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}
Probab=15.23 E-value=38 Score=28.50 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=38.1
Q ss_pred ccCCCChHHHHHHHHhhhh-------cCCCCCCccceeee-----------cccChhHHHHHHHHhcCccccceeecccc
Q 015792 51 CWANMPPELLRDVLLRIEA-------SETTWPPRKNVVAC-----------AGVCRSWREIMKEIVKTLEVSGKLTFPIS 112 (400)
Q Consensus 51 ~w~~~~~ell~~~~~r~e~-------~~~~wp~r~~vv~c-----------a~vc~~wr~~~~eiv~~pe~~g~ltFpis 112 (400)
....+|.|.|.|++-++-- |-...|.+-++..- -|||.+|=.
T Consensus 142 ~~~~~pl~~ll~~lp~l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~r~GvcS~~L~-------------------- 201 (221)
T d1ddga1 142 SPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLA-------------------- 201 (221)
T ss_dssp SCCCCCHHHHHHHSCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHH--------------------
T ss_pred ccCCCCHHHHHHhhhccCceeeeeccccccCCCeeeEEEEEEEeeCCCCccceecHHHHH--------------------
Confidence 3578999999999998753 22345654443221 378888742
Q ss_pred ccCCCCCCceEEEEEEEec
Q 015792 113 LKQPGPRGSLLQCYIKRNR 131 (400)
Q Consensus 113 LkqPgPrd~~iqC~IkR~k 131 (400)
.-.+.|..|.|||+++.
T Consensus 202 --~~l~~g~~V~v~ir~s~ 218 (221)
T d1ddga1 202 --DRVEEEGEVRVFIEHND 218 (221)
T ss_dssp --HSCCSSCEEEEEEECCT
T ss_pred --hhCCCCCEEEEEEecCC
Confidence 12234678999998754
No 10
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=15.04 E-value=60 Score=25.04 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=24.7
Q ss_pred eccccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhC
Q 015792 335 TVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSF 393 (400)
Q Consensus 335 t~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~Lssf 393 (400)
..+...||||+.+.. .+ .| +++ ++|.|.|+.+|+++
T Consensus 17 ~~~~~~~~~i~~d~~-------~~-----~~--~~G---------~~P~elllaaLa~C 52 (141)
T d1lqla_ 17 MTAISDQFQITLDAR-------PK-----HT--AKG---------FGPLAALLSGLAAC 52 (141)
T ss_dssp EEEEETTEEEEECCS-------CT-----TT--CSS---------CCHHHHHHHHHHHH
T ss_pred EEEEcCCeEEEecCC-------CC-----CC--CCC---------cCHHHHHHHHHHHH
Confidence 457889999987631 11 01 112 69999999999876
Done!