Query 015793
Match_columns 400
No_of_seqs 390 out of 1697
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2q_A LM5-1; membrane protein 99.8 4.5E-21 1.5E-25 154.8 3.2 69 140-210 11-79 (84)
2 1x4u_A Zinc finger, FYVE domai 99.8 1.1E-20 3.6E-25 152.5 5.3 70 140-210 4-78 (84)
3 2yw8_A RUN and FYVE domain-con 99.8 2.9E-20 9.9E-25 149.4 3.9 67 140-210 9-75 (82)
4 3t7l_A Zinc finger FYVE domain 99.8 1.8E-20 6.2E-25 153.2 2.6 72 137-212 7-78 (90)
5 1vfy_A Phosphatidylinositol-3- 99.8 1.9E-20 6.5E-25 147.3 1.4 67 140-211 4-70 (73)
6 1joc_A EEA1, early endosomal a 99.8 1.5E-19 5.2E-24 156.2 3.2 65 141-209 60-124 (125)
7 3zyq_A Hepatocyte growth facto 99.7 4.9E-18 1.7E-22 160.3 3.9 68 138-210 155-222 (226)
8 1dvp_A HRS, hepatocyte growth 99.7 6.3E-18 2.2E-22 158.6 3.2 67 138-209 152-218 (220)
9 1wfk_A Zinc finger, FYVE domai 99.7 1.1E-17 3.9E-22 136.1 3.1 62 147-211 6-67 (88)
10 1y02_A CARP2, FYVE-ring finger 99.6 1.6E-16 5.6E-21 136.1 0.7 59 141-209 10-68 (120)
11 3mpx_A FYVE, rhogef and PH dom 99.6 1.3E-16 4.5E-21 161.9 0.0 71 137-210 362-432 (434)
12 2vrw_B P95VAV, VAV1, proto-onc 97.8 5.8E-06 2E-10 83.0 2.2 45 140-184 347-391 (406)
13 1zbd_B Rabphilin-3A; G protein 96.2 0.0024 8.3E-08 55.3 2.9 55 148-207 53-107 (134)
14 2zet_C Melanophilin; complex, 95.6 0.003 1E-07 55.9 1.2 50 150-207 68-117 (153)
15 3ky9_A Proto-oncogene VAV; cal 95.1 0.0082 2.8E-07 63.2 2.5 44 141-184 520-563 (587)
16 2csz_A Synaptotagmin-like prot 92.8 0.055 1.9E-06 42.3 2.5 50 150-208 25-74 (76)
17 1wff_A Riken cDNA 2810002D23 p 91.3 0.2 7E-06 39.9 4.3 31 148-181 23-53 (85)
18 1wfh_A Zinc finger (AN1-like) 90.6 0.18 6.2E-06 38.1 3.2 28 150-181 15-42 (64)
19 1wfp_A Zinc finger (AN1-like) 89.5 0.35 1.2E-05 37.5 4.1 29 149-181 24-52 (74)
20 1wfl_A Zinc finger protein 216 89.2 0.39 1.3E-05 37.3 4.1 28 150-181 25-52 (74)
21 1wg2_A Zinc finger (AN1-like) 87.0 0.46 1.6E-05 35.9 3.2 28 150-181 15-42 (64)
22 1z60_A TFIIH basal transcripti 82.6 0.13 4.5E-06 38.3 -1.5 31 150-182 15-45 (59)
23 1x4w_A Hypothetical protein FL 81.0 0.75 2.6E-05 35.0 2.1 32 148-181 13-45 (67)
24 2e72_A POGO transposable eleme 79.4 0.38 1.3E-05 34.2 -0.0 35 142-177 5-40 (49)
25 2a20_A Regulating synaptic mem 78.4 1.3 4.6E-05 32.8 2.7 53 148-207 7-60 (62)
26 1iym_A EL5; ring-H2 finger, ub 77.1 1.1 3.8E-05 31.1 2.0 49 150-208 5-53 (55)
27 2ect_A Ring finger protein 126 75.6 1.3 4.6E-05 33.1 2.2 50 150-210 15-64 (78)
28 1x4j_A Ring finger protein 38; 74.4 0.48 1.6E-05 35.6 -0.7 51 149-210 22-72 (75)
29 2ecm_A Ring finger and CHY zin 74.0 2.1 7.2E-05 29.6 2.7 50 149-208 4-53 (55)
30 2yur_A Retinoblastoma-binding 73.6 0.88 3E-05 34.1 0.7 49 151-210 16-64 (74)
31 1bor_A Transcription factor PM 69.7 3.7 0.00013 29.0 3.2 45 148-209 4-48 (56)
32 2ysl_A Tripartite motif-contai 69.7 1.7 6E-05 31.9 1.5 50 150-210 20-69 (73)
33 2jrp_A Putative cytoplasmic pr 69.1 4.6 0.00016 31.8 3.8 56 151-210 3-63 (81)
34 1twf_L ABC10-alpha, DNA-direct 68.8 1.6 5.6E-05 33.4 1.2 25 151-175 29-53 (70)
35 2ecl_A Ring-box protein 2; RNF 68.2 1.9 6.7E-05 33.0 1.5 60 141-209 6-75 (81)
36 3lrq_A E3 ubiquitin-protein li 67.5 1.5 5.2E-05 34.9 0.8 47 151-209 23-69 (100)
37 1jm7_B BARD1, BRCA1-associated 63.7 3.7 0.00013 33.5 2.5 44 151-209 23-66 (117)
38 2kiz_A E3 ubiquitin-protein li 60.8 4.7 0.00016 29.3 2.4 51 149-210 13-63 (69)
39 2egp_A Tripartite motif-contai 60.8 2.5 8.6E-05 31.5 0.9 54 150-210 12-65 (79)
40 2ep4_A Ring finger protein 24; 60.6 1.5 5.2E-05 32.5 -0.4 51 150-211 15-65 (74)
41 1chc_A Equine herpes virus-1 r 58.0 5.6 0.00019 28.7 2.4 49 149-210 4-52 (68)
42 2d8t_A Dactylidin, ring finger 57.1 2.8 9.6E-05 30.9 0.6 46 150-209 15-60 (71)
43 2ct2_A Tripartite motif protei 56.9 3.9 0.00013 31.0 1.4 54 150-210 15-68 (88)
44 2ecn_A Ring finger protein 141 55.7 1.8 6.3E-05 31.6 -0.7 47 150-211 15-61 (70)
45 1e4u_A Transcriptional repress 54.2 4.6 0.00016 31.0 1.4 52 149-210 10-62 (78)
46 2l0b_A E3 ubiquitin-protein li 52.3 1.8 6.2E-05 33.8 -1.3 50 149-209 39-88 (91)
47 4gzn_C ZFP-57, zinc finger pro 51.6 5.2 0.00018 28.9 1.2 11 151-161 5-15 (60)
48 2djb_A Polycomb group ring fin 51.1 6.6 0.00023 28.9 1.8 48 150-210 15-62 (72)
49 2ysj_A Tripartite motif-contai 50.5 5.7 0.0002 28.3 1.3 31 150-185 20-50 (63)
50 3fl2_A E3 ubiquitin-protein li 50.5 2.7 9.2E-05 34.6 -0.6 47 151-210 53-99 (124)
51 1t1h_A Gspef-atpub14, armadill 49.3 4.6 0.00016 30.1 0.6 48 150-210 8-55 (78)
52 2ckl_B Ubiquitin ligase protei 49.1 4.4 0.00015 34.9 0.6 48 151-210 55-102 (165)
53 2lv2_A Insulinoma-associated p 49.0 9.9 0.00034 29.4 2.6 13 150-162 28-40 (85)
54 2ecv_A Tripartite motif-contai 48.1 9.2 0.00031 28.4 2.2 53 150-210 19-71 (85)
55 2csy_A Zinc finger protein 183 48.0 7 0.00024 29.4 1.5 46 150-209 15-60 (81)
56 2lce_A B-cell lymphoma 6 prote 47.7 13 0.00045 26.6 3.0 13 150-162 17-29 (74)
57 2ecy_A TNF receptor-associated 47.6 2.3 8E-05 30.8 -1.2 48 150-210 15-62 (66)
58 2ecw_A Tripartite motif-contai 47.0 3.4 0.00012 30.9 -0.4 53 150-210 19-71 (85)
59 1x4v_A Hypothetical protein LO 47.0 12 0.00042 27.9 2.6 27 150-180 12-40 (63)
60 2y43_A E3 ubiquitin-protein li 47.0 5.5 0.00019 31.2 0.8 47 151-210 23-69 (99)
61 2jne_A Hypothetical protein YF 47.0 14 0.00048 30.0 3.2 25 151-176 33-57 (101)
62 2ckl_A Polycomb group ring fin 45.9 5.4 0.00019 31.8 0.6 47 151-210 16-62 (108)
63 3uk3_C Zinc finger protein 217 45.5 11 0.00038 25.2 2.1 12 151-162 5-16 (57)
64 3l11_A E3 ubiquitin-protein li 45.0 5.8 0.0002 31.9 0.7 47 151-210 16-62 (115)
65 4ayc_A E3 ubiquitin-protein li 44.1 4.3 0.00015 34.1 -0.3 46 151-210 54-99 (138)
66 2ea6_A Ring finger protein 4; 43.2 5.6 0.00019 28.5 0.3 52 149-209 14-67 (69)
67 1v87_A Deltex protein 2; ring- 43.0 4.5 0.00015 32.5 -0.3 56 151-210 26-94 (114)
68 3ng2_A RNF4, snurf, ring finge 42.8 5.3 0.00018 28.9 0.1 53 149-210 9-63 (71)
69 3cc2_Z 50S ribosomal protein L 42.1 7.1 0.00024 32.7 0.7 31 150-180 60-91 (116)
70 1wim_A KIAA0161 protein; ring 42.1 8.2 0.00028 30.0 1.1 55 150-207 5-61 (94)
71 1wys_A Riken cDNA 2310008M20 p 42.0 15 0.00053 28.3 2.6 28 150-181 14-43 (75)
72 2ecj_A Tripartite motif-contai 42.0 8 0.00027 26.7 0.9 31 150-185 15-45 (58)
73 2y1n_A E3 ubiquitin-protein li 41.8 4 0.00014 41.0 -0.9 50 150-212 332-381 (389)
74 2xeu_A Ring finger protein 4; 41.4 5 0.00017 28.3 -0.3 52 150-210 3-56 (64)
75 1bbo_A Human enhancer-binding 41.4 14 0.00048 24.7 2.1 10 152-161 3-12 (57)
76 3j20_Y 30S ribosomal protein S 40.2 11 0.00036 26.8 1.3 27 151-177 20-47 (50)
77 1jm7_A BRCA1, breast cancer ty 40.1 8.8 0.0003 30.4 1.0 48 151-209 22-69 (112)
78 2adr_A ADR1; transcription reg 39.9 15 0.0005 25.0 2.1 10 152-161 4-13 (60)
79 3ztg_A E3 ubiquitin-protein li 38.7 11 0.00037 28.9 1.3 48 150-208 13-60 (92)
80 1vd4_A Transcription initiatio 37.5 7.4 0.00025 27.4 0.1 11 151-161 15-25 (62)
81 3h0g_L DNA-directed RNA polyme 37.2 18 0.0006 27.1 2.2 26 150-175 21-46 (63)
82 3vk6_A E3 ubiquitin-protein li 36.5 5.4 0.00018 32.6 -0.8 54 151-216 2-55 (101)
83 2ayj_A 50S ribosomal protein L 35.4 12 0.00039 27.5 0.9 21 151-174 20-40 (56)
84 2cot_A Zinc finger protein 435 34.9 38 0.0013 24.2 3.8 13 150-162 18-30 (77)
85 1x5w_A Zinc finger protein 64, 34.5 15 0.00051 25.9 1.4 11 151-161 10-20 (70)
86 4a0k_B E3 ubiquitin-protein li 33.1 10 0.00035 31.5 0.4 58 141-207 39-109 (117)
87 1x6e_A Zinc finger protein 24; 33.0 16 0.00055 26.0 1.4 11 151-161 15-25 (72)
88 2eps_A POZ-, at HOOK-, and zin 31.7 15 0.00052 24.7 1.0 11 151-161 13-23 (54)
89 2ct7_A Ring finger protein 31; 31.6 18 0.00061 28.1 1.5 32 152-183 27-59 (86)
90 2gqj_A Zinc finger protein KIA 31.4 14 0.00048 28.4 0.9 11 151-161 25-35 (98)
91 2ctd_A Zinc finger protein 512 31.1 15 0.0005 28.6 0.9 11 151-161 35-46 (96)
92 4ap4_A E3 ubiquitin ligase RNF 31.0 4.9 0.00017 32.6 -2.0 54 148-210 70-125 (133)
93 3t6p_A Baculoviral IAP repeat- 30.7 24 0.00082 34.6 2.6 44 150-211 295-339 (345)
94 2fiy_A Protein FDHE homolog; F 30.5 24 0.0008 34.2 2.5 62 150-211 182-266 (309)
95 2d9h_A Zinc finger protein 692 30.1 17 0.0006 26.1 1.2 11 151-161 8-18 (78)
96 1wfe_A Riken cDNA 2310008M20 p 30.0 19 0.00064 28.5 1.3 28 150-181 25-54 (86)
97 1wd2_A Ariadne-1 protein homol 29.8 40 0.0014 24.5 3.1 35 150-184 6-43 (60)
98 2c2l_A CHIP, carboxy terminus 28.9 21 0.00073 32.5 1.8 48 150-210 208-255 (281)
99 2gmg_A Hypothetical protein PF 28.8 20 0.00069 29.4 1.4 10 151-160 68-77 (105)
100 1gnf_A Transcription factor GA 28.5 24 0.00081 24.6 1.5 29 150-182 4-32 (46)
101 1z6u_A NP95-like ring finger p 28.3 17 0.00057 31.1 0.9 47 151-210 79-125 (150)
102 4ic3_A E3 ubiquitin-protein li 28.1 11 0.00037 28.1 -0.3 43 151-211 25-68 (74)
103 2lcq_A Putative toxin VAPC6; P 26.1 20 0.00069 30.9 1.0 24 151-175 133-156 (165)
104 1g25_A CDK-activating kinase a 26.0 11 0.00039 26.8 -0.5 51 151-210 4-55 (65)
105 3k7a_M Transcription initiatio 25.7 33 0.0011 33.3 2.6 35 142-177 12-52 (345)
106 3j21_g 50S ribosomal protein L 25.6 27 0.00092 25.0 1.4 23 151-176 15-37 (51)
107 2ecg_A Baculoviral IAP repeat- 25.5 15 0.0005 27.4 -0.0 43 151-211 26-69 (75)
108 3knv_A TNF receptor-associated 25.3 20 0.00067 30.4 0.8 45 151-208 32-76 (141)
109 2lx0_A Membrane fusion protein 25.0 12 0.00042 23.5 -0.4 16 63-78 2-17 (32)
110 3htk_C E3 SUMO-protein ligase 24.6 19 0.00065 34.3 0.6 50 150-210 181-232 (267)
111 1vq8_Z 50S ribosomal protein L 24.5 21 0.00072 28.0 0.7 29 151-180 28-58 (83)
112 1pft_A TFIIB, PFTFIIBN; N-term 24.1 28 0.00097 24.0 1.3 8 151-158 6-13 (50)
113 2jmo_A Parkin; IBR, E3 ligase, 24.1 72 0.0025 24.2 3.8 34 150-183 25-66 (80)
114 2epr_A POZ-, at HOOK-, and zin 24.0 22 0.00076 23.1 0.7 11 151-161 13-23 (48)
115 1ffk_W Ribosomal protein L37AE 23.8 29 0.001 26.6 1.4 28 150-179 27-57 (73)
116 1d4u_A Nucleotide excision rep 23.5 38 0.0013 28.0 2.2 12 196-207 24-35 (111)
117 2ct1_A Transcriptional repress 23.1 30 0.001 24.8 1.3 11 151-161 16-26 (77)
118 3j21_i 50S ribosomal protein L 22.7 35 0.0012 26.9 1.6 26 151-179 36-65 (83)
119 2kvh_A Zinc finger and BTB dom 22.2 32 0.0011 18.9 1.1 11 167-177 3-13 (27)
120 4ayb_P DNA-directed RNA polyme 22.1 47 0.0016 23.4 2.0 24 152-175 5-31 (48)
121 2kdx_A HYPA, hydrogenase/ureas 21.9 31 0.0011 28.3 1.3 10 152-161 75-84 (119)
122 2dmd_A Zinc finger protein 64, 21.8 58 0.002 23.9 2.8 11 151-161 9-19 (96)
123 2m0e_A Zinc finger and BTB dom 21.8 30 0.001 18.9 0.9 8 169-176 4-11 (29)
124 2elu_A Zinc finger protein 406 21.5 21 0.00072 23.3 0.2 10 167-176 9-18 (37)
125 3iz5_m 60S ribosomal protein L 21.3 43 0.0015 26.8 1.9 26 151-179 37-66 (92)
126 2fc7_A ZZZ3 protein; structure 21.1 41 0.0014 26.1 1.8 30 151-182 22-55 (82)
127 3dpl_R Ring-box protein 1; ubi 21.1 29 0.001 28.0 1.0 59 141-208 28-99 (106)
128 3hct_A TNF receptor-associated 21.1 26 0.00088 28.3 0.6 47 151-210 19-65 (118)
129 2drp_A Protein (tramtrack DNA- 20.5 36 0.0012 23.4 1.2 10 152-161 12-21 (66)
130 1vq8_1 50S ribosomal protein L 20.2 41 0.0014 24.6 1.5 6 170-175 20-25 (57)
131 2yu4_A E3 SUMO-protein ligase 20.1 28 0.00095 27.1 0.6 31 151-185 8-38 (94)
132 2kvf_A Zinc finger and BTB dom 20.1 38 0.0013 18.6 1.1 12 167-178 3-14 (28)
133 2m0d_A Zinc finger and BTB dom 20.1 37 0.0013 18.7 1.0 12 167-178 3-14 (30)
134 2wbt_A B-129; zinc finger; 2.7 20.0 30 0.001 27.4 0.8 11 167-177 74-84 (129)
No 1
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.81 E-value=4.5e-21 Score=154.78 Aligned_cols=69 Identities=41% Similarity=0.838 Sum_probs=61.8
Q ss_pred CCCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..+.|+||+++..|+.|+++|+ +++||||||+||+|||++||+++..+|. ....+|+|||+.||..|+.
T Consensus 11 ~~~~W~pd~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 11 SKGYWQEDEDAPACNGCGCVFT-TTVRRHHCRNCGYVLCGDCSRHRAAIPM-RGITEPERVCDACYLALRS 79 (84)
T ss_dssp CCSCCCCTTTCCBCTTTCCBCC-TTSCCEECTTTCCEECTGGGCCEEEETT-TTEEEEEECCHHHHHHHHT
T ss_pred CCCccccCCCCCCCcCcCCccc-cchhcccccCCCcEEChHHhCCeEeccC-CCCCCCCEECHHHHHHHhh
Confidence 4679999999999999999999 5689999999999999999999998884 3346899999999998864
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-20 Score=152.54 Aligned_cols=70 Identities=24% Similarity=0.541 Sum_probs=60.6
Q ss_pred CCCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCC-----CCcceEecccccccccc
Q 015793 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFR-----ERNPQRVCDACYDRLDP 210 (400)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~-----~~~p~RVC~~C~~~l~~ 210 (400)
..+.|+||+++..|+.|+++|+ +++||||||+||+|||++|++++.++|.... ..+++|||+.||+.|..
T Consensus 4 ~~~~W~pd~~~~~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~ 78 (84)
T 1x4u_A 4 GSSGRYPTNNFGNCTGCSATFS-VLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSK 78 (84)
T ss_dssp CCCCSCSCCCCSSCSSSCCCCC-SSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHS
T ss_pred CCCccccCCCCCcCcCcCCccc-cchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhc
Confidence 4678999999999999999999 6789999999999999999999988873211 13789999999998864
No 3
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.79 E-value=2.9e-20 Score=149.38 Aligned_cols=67 Identities=40% Similarity=0.921 Sum_probs=56.1
Q ss_pred CCCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|.|+||+++..|+.|+++|+ +++||||||+||+|||+.|++++..+|. ..+|+|||+.||..|..
T Consensus 9 ~~~~W~~d~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 9 KGHAWLKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNELALPS---YPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp ------CCCCCCBCTTTCCBCB-TTBCCEECTTTCCEECSGGGCEEECCTT---CSSCEEECHHHHHHTTC
T ss_pred CCCccccCccCCcccCcCCccc-CccccccCCCCCCEEChHHhCCeeecCC---CCCcCEECHHHHHHHHH
Confidence 3578999999999999999999 6789999999999999999999988874 36899999999998864
No 4
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.79 E-value=1.8e-20 Score=153.17 Aligned_cols=72 Identities=43% Similarity=1.025 Sum_probs=63.9
Q ss_pred ccCCCCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccccc
Q 015793 137 LEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQ 212 (400)
Q Consensus 137 ~~~~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~~q 212 (400)
+..++|.|++|+++..|+.|+++|+ +++||||||+||++||..|+.++..+|. ..+|+|||+.||+.|+..+
T Consensus 7 l~~~~p~W~~d~~~~~C~~C~~~F~-~~~RrhhCr~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~~~ 78 (90)
T 3t7l_A 7 LGQKQPTWVPDSEAPNCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQY---LEKEARVCVVCYETISKAQ 78 (90)
T ss_dssp TTTSCCCCCCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEEEETT---TTEEEEECHHHHHHHHHHC
T ss_pred cCCCCCcCcccccCCcCcCCCCccc-chhhCccccCCCCEECCcccCCeeecCC---CCCCCeECHHHHHHHHHHh
Confidence 4556899999999999999999999 6689999999999999999999988873 2589999999999987544
No 5
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.78 E-value=1.9e-20 Score=147.27 Aligned_cols=67 Identities=37% Similarity=0.958 Sum_probs=56.2
Q ss_pred CCCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccccc
Q 015793 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (400)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (400)
.+|.|+++ ..|+.|+++|+ +++||||||+||+|||+.||+++..+|. ++..+|+|||+.||+.|+.+
T Consensus 4 ~~p~W~~~---~~C~~C~~~F~-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 4 TPADWIDS---DACMICSKKFS-LLNRKHHCRSCGGVFCQEHSSNSIPLPD-LGIYEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp ---CCCCC---SBCTTTCCBCB-TTBCCEECTTTCCEECGGGSCEEEEEGG-GTEEEEEEECHHHHHHHHHH
T ss_pred CCCcCccC---CcccCCCCccC-CccccccCCCCCEEEcccccCCeEEccc-CCCCCCCEECHHHHHHHHHH
Confidence 48899997 58999999999 6689999999999999999999988883 34468999999999988643
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.76 E-value=1.5e-19 Score=156.19 Aligned_cols=65 Identities=42% Similarity=1.014 Sum_probs=59.5
Q ss_pred CCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 141 PPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 141 ~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
.|.|+||+++..|+.|+++|+ +++||||||+||+|||+.||+++.++|. ..+|+|||+.||..|+
T Consensus 60 ~~~W~~d~~~~~C~~C~~~Fs-~~~RrHHCR~CG~vfC~~Cs~~~~~~p~---~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 60 NRKWAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HCCCCCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEECCTT---CSSCEEECHHHHHHTT
T ss_pred CCccccCCCCCCCcCcCCccc-cccccccCCCCCeEEChHHhCCccccCC---CCCCCEeCHHHHHHhc
Confidence 678999999999999999999 6789999999999999999999988873 3689999999999874
No 7
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.69 E-value=4.9e-18 Score=160.31 Aligned_cols=68 Identities=32% Similarity=0.945 Sum_probs=59.6
Q ss_pred cCCCCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 138 EAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 138 ~~~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
...+|.|+++ ..|+.|+++|+ +++||||||+||++||+.||+++..+| .++..+|+|||+.||+.|+.
T Consensus 155 ~~~~p~W~~~---~~C~~C~~~F~-~~~RrhHCR~CG~v~C~~Cs~~~~~~p-~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 155 AERAPDWVDA---EECHRCRVQFG-VMTRKHHCRACGQIFCGKCSSKYSTIP-KFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CCCCCCCCCC---SBCTTTCCBCB-TTBCCEECTTTCCEECTTTCCEEEEEG-GGTEEEEEEECHHHHHHHCC
T ss_pred cccccccccC---CCCcCcCCCCC-ccccccccCCCcCEeChhhcCCcccCC-CCCCCCCCEeCHHHHHHhhh
Confidence 4568999986 58999999999 678999999999999999999998888 34456899999999998864
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.68 E-value=6.3e-18 Score=158.63 Aligned_cols=67 Identities=42% Similarity=1.030 Sum_probs=58.8
Q ss_pred cCCCCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 138 EAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 138 ~~~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
...+|.|+++ ..|+.|+++|+ +++||||||+||++||+.||+++..+| .++..+|+|||+.||..|+
T Consensus 152 ~~~~~~W~~~---~~C~~C~~~F~-~~~rrhhCr~CG~v~C~~Cs~~~~~~~-~~~~~~~~RvC~~C~~~l~ 218 (220)
T 1dvp_A 152 ADTAPNWADG---RVCHRCRVEFT-FTNRKHHCRNCGQVFCGQCTAKQCPLP-KYGIEKEVRVCDGCFAALQ 218 (220)
T ss_dssp CSCCCCCCCC---SBCTTTCCBCC-SSSCCEECTTTCCEECSTTSCEEEEEG-GGTEEEEEEECHHHHHHHH
T ss_pred ccccccCCCC---CccCCCCCccC-CcccccccCCcCCEEChHHhCCeeecC-cCCCCCCCEeCHHHHHHHh
Confidence 3458899986 69999999999 678999999999999999999999888 3455789999999998874
No 9
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.67 E-value=1.1e-17 Score=136.06 Aligned_cols=62 Identities=29% Similarity=0.611 Sum_probs=53.6
Q ss_pred CCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccccc
Q 015793 147 DSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (400)
Q Consensus 147 d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (400)
++++..|+.|+++|+ +++||||||+||+|||+.|++++..+|. + ..+|+|||+.||..|...
T Consensus 6 ~~~~~~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~lp~-~-g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 6 SGMESRCYGCAVKFT-LFKKEYGCKNCGRAFCNGCLSFSALVPR-A-GNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCCCSBCTTTCCBCC-SSSCEEECSSSCCEEETTTSCEEEEETT-T-TSEEEEECHHHHHHHHHC
T ss_pred CCcCCCCcCcCCccc-CccccccCCCCCCEEChhHcCCceeccc-c-CCCcCEECHHHHHHHHhc
Confidence 345789999999999 5689999999999999999999998884 2 258999999999988643
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.58 E-value=1.6e-16 Score=136.10 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=42.3
Q ss_pred CCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 141 PPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 141 ~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
.+.|.||.++..|+.|+.+|+ +++||||||+||++||++||+++.. ++|||+.||..+.
T Consensus 10 ~~~~~Pd~~~~~C~~C~~~Fs-~~~RkHHCR~CG~ifC~~Cs~~~~~---------~vRVC~~C~~~~~ 68 (120)
T 1y02_A 10 SSFPSPTGLEPSCKSCGAHFA-NTARKQTCLDCKKNFCMTCSSQVGN---------GPRLCLLCQRFRA 68 (120)
T ss_dssp ----------CCCTTTCCCCS-SGGGCEECTTTCCEECGGGEEC-------------CCEEHHHHHHHH
T ss_pred ccCCcCccccCcccCcCCccc-cccccccCCCCCCeeCHHHhCCCCC---------CceECHHHHHHHh
Confidence 346889999999999999999 6789999999999999999988642 4999999998764
No 11
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.3e-16 Score=161.88 Aligned_cols=71 Identities=35% Similarity=0.892 Sum_probs=0.0
Q ss_pred ccCCCCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 137 LEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 137 ~~~~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
+...+|.|+||.++..|+.|+.+|+ +++||||||+||++||..||+++.++| +...+|+|||+.||..|..
T Consensus 362 ~~~~~p~w~~~~~~~~c~~c~~~f~-~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~--~~~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 362 LGERPPTLVPVTHVMMCMNCGCDFS-LTLRRHHCHACGKIVCRNCSRNKYPLK--YLKDRMAKVCDGCFGELKK 432 (434)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCcCCCcccCCcCCCcCCCCC-CcchhhhcccCcCEeehhhCCCeeeCC--CCCCCcCEecHHHHHHHHh
Confidence 3446899999999999999999999 678999999999999999999987776 4456899999999998853
No 12
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.80 E-value=5.8e-06 Score=83.02 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=40.4
Q ss_pred CCCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCc
Q 015793 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKG 184 (400)
Q Consensus 140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~ 184 (400)
..+.|.++...+.|+.|+..|..+++|+||||.||.++|..|+..
T Consensus 347 h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 347 HDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 456799999999999999999657889999999999999999864
No 13
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=96.16 E-value=0.0024 Score=55.28 Aligned_cols=55 Identities=18% Similarity=0.511 Sum_probs=44.9
Q ss_pred CCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccc
Q 015793 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (400)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (400)
.....|..|.++|+++..+.|-|..|.+-||.+|.... + .....+.=+|..|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~--~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---S--NNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---C--CSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc---C--CCCCccceechhhHHH
Confidence 34689999999998777889999999999999998643 1 1235678999999874
No 14
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=95.61 E-value=0.003 Score=55.88 Aligned_cols=50 Identities=28% Similarity=0.738 Sum_probs=43.1
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (400)
...|..|.++|+++..+.+-|..|.+-||.+|... +| ..+.=+|..|+..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~-----~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HP-----EEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CS-----SSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc---cC-----CCCcEeeHHHHHH
Confidence 58999999999998899999999999999999843 22 3578899999875
No 15
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=95.06 E-value=0.0082 Score=63.19 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=37.6
Q ss_pred CCccccCCCCCcCccCCcCCCccccccccccccCceEeCCCCCc
Q 015793 141 PPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKG 184 (400)
Q Consensus 141 ~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~ 184 (400)
...|.+....+.|+.|+..|..++++.|||+.||.++|..|...
T Consensus 520 ~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 520 DFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp CEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred ceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 34567778889999999998447789999999999999999864
No 16
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.76 E-value=0.055 Score=42.32 Aligned_cols=50 Identities=24% Similarity=0.601 Sum_probs=41.8
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (400)
...|..|+.+|++|+.|---|+.|-+-+|.+|-... ..+.=.|..|++..
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~---------~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE---------SNGTWRCKVCSGPS 74 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC---------STTCEEEHHHHSSC
T ss_pred ccchhhhCccccccccCCCcCcccChhhcccccccC---------CCCCEEEeeCchhh
Confidence 578999999999999999999999999999995321 12678898888764
No 17
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=91.31 E-value=0.2 Score=39.89 Aligned_cols=31 Identities=29% Similarity=0.691 Sum_probs=24.9
Q ss_pred CCCCcCccCCcCCCccccccccccccCceEeCCC
Q 015793 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (400)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (400)
.....|..|++... |+ -..+|| ||.+||..+
T Consensus 23 ~~~~rC~~C~kkvg-l~-~~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 23 KIMKHCFLCGKKTG-LA-TSFECR-CGNNFCASH 53 (85)
T ss_dssp CCCCBCSSSCCBCS-SS-SCEECT-TCCEECTTT
T ss_pred ccCccchhhCCeec-cc-CCeEcC-CCCEecccC
Confidence 34578999999988 43 258998 999999876
No 18
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=90.58 E-value=0.18 Score=38.09 Aligned_cols=28 Identities=36% Similarity=0.818 Sum_probs=23.4
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCC
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (400)
...|..|++... |+ ..+|| ||..||..+
T Consensus 15 ~~rC~~C~kkvg-l~--~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVG-LT--GFMCR-CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCC-TT--CEECS-SSCEECTTT
T ss_pred CCcChhhCCccC-cc--CEEee-cCCEecccc
Confidence 478999999988 44 58896 999999876
No 19
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=89.52 E-value=0.35 Score=37.50 Aligned_cols=29 Identities=34% Similarity=0.933 Sum_probs=23.8
Q ss_pred CCCcCccCCcCCCccccccccccccCceEeCCC
Q 015793 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (400)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (400)
....|..|++... |+ ..+|| ||..||..+
T Consensus 24 ~~~RC~~C~kkvg-L~--~f~Cr-Cg~~FCs~H 52 (74)
T 1wfp_A 24 TATRCLSCNKKVG-VT--GFKCR-CGSTFCGTH 52 (74)
T ss_dssp CCCBCSSSCCBCT-TT--CEECT-TSCEECTTT
T ss_pred cCccchhhcCccc-cc--ceEec-cCCEecccc
Confidence 3578999999988 44 58995 999999876
No 20
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=89.20 E-value=0.39 Score=37.28 Aligned_cols=28 Identities=36% Similarity=0.967 Sum_probs=23.6
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCC
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (400)
...|..|++... |+ ..+|| ||..||..+
T Consensus 25 ~nRC~~CrKkvg-L~--gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 25 KNRCFMCRKKVG-LT--GFDCR-CGNLFCGLH 52 (74)
T ss_dssp TTBCSSSCCBCG-GG--CEECT-TSCEECSSS
T ss_pred CCcChhhCCccc-cc--CeecC-CCCEechhc
Confidence 468999999988 44 48999 999999875
No 21
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=86.99 E-value=0.46 Score=35.86 Aligned_cols=28 Identities=25% Similarity=0.763 Sum_probs=23.2
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCC
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (400)
...|..|++... |+ ..+| .||..||..+
T Consensus 15 ~~rC~~C~kkvg-l~--~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVG-VM--GFKC-KCGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCT-TS--CEEC-TTSCEECSSS
T ss_pred CCcChhhCCccc-cc--CeEe-ecCCEecccC
Confidence 468999999988 44 5889 5999999876
No 22
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.61 E-value=0.13 Score=38.26 Aligned_cols=31 Identities=26% Similarity=0.718 Sum_probs=25.2
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCC
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICT 182 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS 182 (400)
...|..|+++|.. ..+..|..|..+||..|=
T Consensus 15 ~~~C~~C~~~~~~--~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 15 ERFCYGCQGELKD--QHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CCEETTTTEECTT--SEEECCTTTTCCBCHHHH
T ss_pred CCcccccCcccCC--CccEECCccCcCcccchh
Confidence 3569999999962 235889999999999983
No 23
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.97 E-value=0.75 Score=35.03 Aligned_cols=32 Identities=34% Similarity=0.770 Sum_probs=24.5
Q ss_pred CCCCcCccCCcCCCccccc-cccccccCceEeCCC
Q 015793 148 SSTTVCMQCTAPFTALTRG-RHHCRFCGGVFCRIC 181 (400)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rR-rHHCR~CG~vfC~~C 181 (400)
.....|..|++.-. |+.. -.+| .||.+||..+
T Consensus 13 ~~~~rC~~C~kk~g-L~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 13 KSRRRCFQCQTKLE-LVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp SCTTBCSSSCCBCC-HHHHHHHCC-SSSCCCCTTT
T ss_pred ccCCcchhhCCeec-ccccCceEe-cCCCEehhcc
Confidence 34578999999988 5421 2789 7999999875
No 24
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.36 E-value=0.38 Score=34.25 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=26.5
Q ss_pred CccccCCCCCcCccCCcCCCcc-ccccccccccCceE
Q 015793 142 PEWLPDSSTTVCMQCTAPFTAL-TRGRHHCRFCGGVF 177 (400)
Q Consensus 142 p~W~pd~~~~~C~~C~~~F~~l-~rRrHHCR~CG~vf 177 (400)
+.|... ....|..|++.|+.+ ..|+|-|+.||.++
T Consensus 5 ~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 5 SSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred cccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 345544 678999999999842 34789999998864
No 25
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=78.45 E-value=1.3 Score=32.81 Aligned_cols=53 Identities=26% Similarity=0.663 Sum_probs=39.1
Q ss_pred CCCCcCccCCc-CCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccc
Q 015793 148 SSTTVCMQCTA-PFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (400)
Q Consensus 148 ~~~~~C~~C~~-~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (400)
.+...|.+|.+ +|.- . --|.|..|-.-||..|.-+. .+ ..++-.-||..|..+
T Consensus 7 ~d~~~C~iC~KTKFAD-G-~Gh~C~yCk~r~CaRCGg~v-~l----r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKTKFAD-G-CGHNCSYCQTKFCARCGGRV-SL----RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCSCCCS-S-CCEEBTTTCCEECTTSEEEE-ES----STTCEEEEEHHHHHH
T ss_pred CCcchhhhhccceecc-C-CCccccccCCeeecccCCEe-ee----cCCeEEEEehhhhhc
Confidence 34678999998 4642 2 36999999999999997554 33 235778899988653
No 26
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=77.08 E-value=1.1 Score=31.11 Aligned_cols=49 Identities=18% Similarity=0.360 Sum_probs=31.1
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (400)
...|.+|...|.. ...-.....||++||..|..... +....|-.|...+
T Consensus 5 ~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~---------~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWL---------GSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTT---------TTCCSCSSSCCCS
T ss_pred CCcCccCCccccC-CCceEECCCCCCcccHHHHHHHH---------HcCCcCcCCCCEe
Confidence 4689999998863 11112223599999999975542 1134677776544
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=75.62 E-value=1.3 Score=33.12 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=33.6
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
...|.+|...|.. . ....--.||++||..|...+.. ..+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~-~-~~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 15 GLECPVCKEDYAL-G-ESVRQLPCNHLFHDSCIVPWLE---------QHDSCPVCRKSLTG 64 (78)
T ss_dssp SCCCTTTTSCCCT-T-SCEEECTTSCEEETTTTHHHHT---------TTCSCTTTCCCCCC
T ss_pred CCCCeeCCccccC-C-CCEEEeCCCCeecHHHHHHHHH---------cCCcCcCcCCccCC
Confidence 4689999998862 1 1122235999999999865521 12579899887754
No 28
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.41 E-value=0.48 Score=35.57 Aligned_cols=51 Identities=24% Similarity=0.502 Sum_probs=35.2
Q ss_pred CCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
+...|.+|...|.. ......-.||++||..|...... ....|-.|...+.+
T Consensus 22 ~~~~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~w~~---------~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFES--RQLLRVLPCNHEFHAKCVDKWLK---------ANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCB--TCEEEEETTTEEEETTHHHHHHH---------HCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCC--CCeEEEECCCCHhHHHHHHHHHH---------cCCcCcCcCCcCCC
Confidence 45689999998862 22344556999999999865521 12468888877654
No 29
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=73.97 E-value=2.1 Score=29.58 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=32.9
Q ss_pred CCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccc
Q 015793 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (400)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (400)
+...|.+|...|.. ..+......||++||..|....... ...|-.|...+
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHT-SRVVAHVLPCGHLLHRTCYEEMLKE---------GYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCT-TTSCEEECTTSCEEETTHHHHHHHH---------TCCCTTSCCSS
T ss_pred CCCcCcccChhhcC-CCcCeEecCCCCcccHHHHHHHHHc---------CCcCCCCCCcC
Confidence 34689999998852 1233455679999999998654211 15677776554
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=73.64 E-value=0.88 Score=34.12 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=32.2
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|.+|...|.- ...-..||++||..|....... ...+.|-.|...+..
T Consensus 16 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHH-------SSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHh-------cCCCcCCCCCCcCCC
Confidence 579999887752 2233449999999998654321 124578888875443
No 31
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.74 E-value=3.7 Score=29.02 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=30.4
Q ss_pred CCCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
.+...|.+|...|.. -.--.||+.||..|... ....|-.|...+.
T Consensus 4 ~~~~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~------------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-----PKLLPCLHTLCSGCLEA------------SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC-----CSCSTTSCCSBTTTCSS------------SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC-----eEEcCCCCcccHHHHcc------------CCCCCCcCCcEee
Confidence 345679999988762 12246999999999754 1335777766554
No 32
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.73 E-value=1.7 Score=31.91 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
...|.+|...|..- .. -.||++||..|...... .....+.|-.|...+..
T Consensus 20 ~~~C~IC~~~~~~~----~~-~~CgH~fC~~Ci~~~~~------~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 20 EVICPICLDILQKP----VT-IDCGHNFCLKCITQIGE------TSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCBCTTTCSBCSSE----EE-CTTCCEEEHHHHHHHCS------SSCSCCCCSSSCCCCCC
T ss_pred CCEeccCCcccCCe----EE-cCCCChhhHHHHHHHHH------cCCCCCCCCCCCCcCCc
Confidence 46899999987621 11 27999999999865422 11345678888877653
No 33
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=69.06 E-value=4.6 Score=31.77 Aligned_cols=56 Identities=16% Similarity=0.375 Sum_probs=33.7
Q ss_pred CcCccCCcCCCccccccccccccCce-----EeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGV-----FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-----fC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|..|+.+.. ...+.+||..|++- ||..|-..-..++.- +.-.--|..|.+.+++
T Consensus 3 ~~CP~C~~~l~-~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkAC---GA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 3 ITCPVCHHALE-RNGDTAHCETCAKDFSLQALCPDCRQPLQVLKAC---GAVDYFCQNGHGLISK 63 (81)
T ss_dssp CCCSSSCSCCE-ECSSEEECTTTCCEEEEEEECSSSCSCCCEEEET---TEEEECCTTTTCCCCT
T ss_pred CCCCCCCCccc-cCCCceECccccccCCCcccCcchhhHHHHHHhc---CCcCeeeccCCCEeec
Confidence 46888888776 44557778888764 677775443333211 1225566777666654
No 34
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=68.78 E-value=1.6 Score=33.36 Aligned_cols=25 Identities=20% Similarity=0.687 Sum_probs=18.1
Q ss_pred CcCccCCcCCCccccccccccccCc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGG 175 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~ 175 (400)
-.|..|+..|.....-.-||+.||.
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCc
Confidence 5799999998843333567888877
No 35
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.22 E-value=1.9 Score=32.97 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=39.9
Q ss_pred CCccccCCCCCcCccCCcCCCcc---------ccc-cccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 141 PPEWLPDSSTTVCMQCTAPFTAL---------TRG-RHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 141 ~p~W~pd~~~~~C~~C~~~F~~l---------~rR-rHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
.+.|..|.+...|.+|...|... ... ...-..||++|+..|...... ....|-.|...+.
T Consensus 6 ~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 6 SGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK---------QNNRCPLCQQDWV 75 (81)
T ss_dssp CCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT---------TCCBCTTTCCBCC
T ss_pred eEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH---------hCCCCCCcCCCcc
Confidence 45677777888999999999521 000 112225999999999765521 1247888887664
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=67.46 E-value=1.5 Score=34.89 Aligned_cols=47 Identities=19% Similarity=0.526 Sum_probs=34.6
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
..|.+|...|. ....|-.||++||..|....... ....|-.|...+.
T Consensus 23 ~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~--------~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR----DARLCPHCSKLCCFSCIRRWLTE--------QRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHHH--------TCSBCTTTCCBCC
T ss_pred CCCccCCcccc----CccccCCCCChhhHHHHHHHHHH--------CcCCCCCCCCcCC
Confidence 57999999775 34667899999999998654221 1167989988774
No 37
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.65 E-value=3.7 Score=33.46 Aligned_cols=44 Identities=23% Similarity=0.460 Sum_probs=30.6
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
-.|.+|...|.- -..-..||+.||..|...... ..|-.|...+.
T Consensus 23 ~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBCS
T ss_pred CCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcCc
Confidence 579999887752 122227999999999865421 56888887764
No 38
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=60.82 E-value=4.7 Score=29.26 Aligned_cols=51 Identities=14% Similarity=0.391 Sum_probs=34.1
Q ss_pred CCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
....|.+|...|.. ......-.||++||..|...+... .+.|-.|...+..
T Consensus 13 ~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLIT---------NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCS--SSCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccC--CCcEEEeCCCCHHHHHHHHHHHHc---------CCCCcCcCccccC
Confidence 34689999998852 123444569999999998654211 2248888877653
No 39
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=60.76 E-value=2.5 Score=31.46 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=35.4
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
...|.+|...|..- .. -.||+.||..|......... ........|-.|...+..
T Consensus 12 ~~~C~IC~~~~~~p----~~-l~CgH~fC~~Ci~~~~~~~~--~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEP----LS-LDCGHSLCRACITVSNKEAV--TSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSC----CC-CSSSCCCCHHHHSCCCCCCS--SSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCe----eE-CCCCCHHHHHHHHHHHHhcc--cCCCCCCcCCCCCCcCCH
Confidence 46799999987631 11 36999999999876532211 111346789889887754
No 40
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.61 E-value=1.5 Score=32.47 Aligned_cols=51 Identities=22% Similarity=0.388 Sum_probs=33.5
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (400)
...|.+|...|.. . ....--.||++||..|...+.. ..+.|-.|...+...
T Consensus 15 ~~~C~IC~~~~~~-~-~~~~~~~C~H~f~~~Ci~~~~~---------~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 15 HELCAVCLEDFKP-R-DELGICPCKHAFHRKCLIKWLE---------VRKVCPLCNMPVLQL 65 (74)
T ss_dssp SCBCSSSCCBCCS-S-SCEEEETTTEEEEHHHHHHHHH---------HCSBCTTTCCBCSSC
T ss_pred CCCCcCCCcccCC-C-CcEEEcCCCCEecHHHHHHHHH---------cCCcCCCcCcccccc
Confidence 4679999998862 1 1121126999999999865421 123798898776543
No 41
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=58.03 E-value=5.6 Score=28.66 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=33.7
Q ss_pred CCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
....|.+|...|.. ......||++||..|...... ....|-.|...+..
T Consensus 4 ~~~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN----YSMALPCLHAFCYVCITRWIR---------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHH---------HSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC----CcEecCCCCeeHHHHHHHHHh---------CcCcCcCCChhhHh
Confidence 34689999998752 123457999999999865421 12478888877654
No 42
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.06 E-value=2.8 Score=30.88 Aligned_cols=46 Identities=24% Similarity=0.565 Sum_probs=31.6
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
...|.+|...|..- .--.||++||..|...... ..+.|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~~-----~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 15 VPECAICLQTCVHP-----VSLPCKHVFCYLCVKGASW---------LGKRCALCRQEIP 60 (71)
T ss_dssp CCBCSSSSSBCSSE-----EEETTTEEEEHHHHHHCTT---------CSSBCSSSCCBCC
T ss_pred CCCCccCCcccCCC-----EEccCCCHHHHHHHHHHHH---------CCCcCcCcCchhC
Confidence 46799999877521 1126999999999764321 1257888887765
No 43
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.94 E-value=3.9 Score=31.00 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=34.9
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
...|.+|...|.. ..+.-.--.||+.||..|....... ......|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~-~~~~~~~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTE-EQLRPKLLHCGHTICRQCLEKLLAS------SINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCT-TSSCEEECSSSCEEEHHHHHHHHHH------CSSCBCCTTTCCCBCC
T ss_pred CCCCccCCccccc-cCCCeEECCCCChhhHHHHHHHHHc------CCCCcCCCCCCCcccc
Confidence 4679999998873 1111222379999999998654321 1235678888876643
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.73 E-value=1.8 Score=31.64 Aligned_cols=47 Identities=19% Similarity=0.442 Sum_probs=33.1
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (400)
...|.+|...|.. .--.||++||..|..... ...+.|-.|...+...
T Consensus 15 ~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~---------~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD------LILPCAHSFCQKCIDKWS---------DRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS------EEETTTEEECHHHHHHSS---------CCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC------cccCCCCcccHHHHHHHH---------HCcCcCCCcCCcccCC
Confidence 4689999998763 234699999999976532 1345688887766543
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=54.19 E-value=4.6 Score=30.97 Aligned_cols=52 Identities=23% Similarity=0.593 Sum_probs=34.0
Q ss_pred CCCcCccCCcCCCcccc-ccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 149 STTVCMQCTAPFTALTR-GRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 149 ~~~~C~~C~~~F~~l~r-RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
+...|.+|-.+|+ +.. +-.-| .||+.||..|..... . .....|-.|...+..
T Consensus 10 ~~~~CpICle~~~-~~d~~~~p~-~CGH~fC~~Cl~~~~----~----~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLE-IDDINFFPC-TCGYQICRFCWHRIR----T----DENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCC-TTTTTCCSS-TTSCCCCHHHHHHHT----T----SSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCc-ccccccccc-CCCCCcCHHHHHHHH----h----cCCCCCCCCCCccCC
Confidence 3467999999886 221 11223 599999999975431 0 124678889887764
No 46
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=52.30 E-value=1.8 Score=33.83 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=33.5
Q ss_pred CCCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
+...|.+|...|.. . .....-.||++||..|...+.. ....|-.|...+.
T Consensus 39 ~~~~C~IC~~~~~~-~-~~~~~l~C~H~Fh~~Ci~~wl~---------~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVK-G-DVATELPCHHYFHKPCVSIWLQ---------KSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCT-T-CEEEEETTTEEEEHHHHHHHHT---------TTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcC-C-CcEEecCCCChHHHHHHHHHHH---------cCCcCcCcCccCC
Confidence 34679999998863 1 1233345999999999765521 1247888887664
No 47
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=51.57 E-value=5.2 Score=28.88 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=7.8
Q ss_pred CcCccCCcCCC
Q 015793 151 TVCMQCTAPFT 161 (400)
Q Consensus 151 ~~C~~C~~~F~ 161 (400)
-.|..|++.|.
T Consensus 5 y~C~~C~k~F~ 15 (60)
T 4gzn_C 5 FFCNFCGKTYR 15 (60)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCCEeC
Confidence 35777888775
No 48
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.14 E-value=6.6 Score=28.86 Aligned_cols=48 Identities=17% Similarity=0.393 Sum_probs=33.3
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
...|.+|...|.. ...-..||++||..|...... ..+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLID----ATTITECLHTFCKSCIVRHFY---------YSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHH---------HCSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHH---------cCCcCCCcCcccCc
Confidence 3579999887752 233357999999999865421 13568888877754
No 49
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.54 E-value=5.7 Score=28.27 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCce
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~ 185 (400)
...|.+|...|..- .. -.||++||..|....
T Consensus 20 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 20 EVICPICLDILQKP----VT-IDCGHNFCLKCITQI 50 (63)
T ss_dssp CCBCTTTCSBCSSC----EE-CTTSSEECHHHHHHH
T ss_pred CCCCCcCCchhCCe----EE-eCCCCcchHHHHHHH
Confidence 46799999877621 11 279999999997654
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=50.50 E-value=2.7 Score=34.56 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=32.9
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|.+|...|..- .--.||+.||..|...... ...+.|-.|...+..
T Consensus 53 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRP-----ITTVCQHNVCKDCLDRSFR--------AQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSE-----EECTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCc-----EEeeCCCcccHHHHHHHHh--------HCcCCCCCCCccCCC
Confidence 4799999877621 1127999999999765421 234578889887754
No 51
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=49.28 E-value=4.6 Score=30.06 Aligned_cols=48 Identities=10% Similarity=0.038 Sum_probs=32.6
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
.-.|.+|...|.- -..-.||++||..|...... ...+.|-.|...+..
T Consensus 8 ~~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~~--------~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 8 YFRCPISLELMKD-----PVIVSTGQTYERSSIQKWLD--------AGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHHT--------TTCCBCTTTCCBCSS
T ss_pred cCCCCCccccccC-----CEEcCCCCeecHHHHHHHHH--------HCcCCCCCCcCCCCh
Confidence 3579999987752 12237999999999765421 124678888877653
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=49.15 E-value=4.4 Score=34.94 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=34.2
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|.+|...|.. ...+..||++||..|...... .....|-.|...+..
T Consensus 55 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN----TMTTKECLHRFCADCIITALR--------SGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHH--------TTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhC----cCEeCCCCChhHHHHHHHHHH--------hCcCCCCCCCCcCCC
Confidence 479999887762 334458999999999865421 124679999887754
No 53
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=48.95 E-value=9.9 Score=29.37 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=9.5
Q ss_pred CCcCccCCcCCCc
Q 015793 150 TTVCMQCTAPFTA 162 (400)
Q Consensus 150 ~~~C~~C~~~F~~ 162 (400)
...|..|++.|..
T Consensus 28 ~h~C~~Cgk~F~~ 40 (85)
T 2lv2_A 28 CHLCPVCGESFAS 40 (85)
T ss_dssp TEECTTSCCEESS
T ss_pred CEECCCCCCCcCc
Confidence 3568888888863
No 54
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.12 E-value=9.2 Score=28.40 Aligned_cols=53 Identities=21% Similarity=0.460 Sum_probs=34.1
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
...|.+|...|..- .. -.||++||..|.......... ......|-.|...+..
T Consensus 19 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~~~~---~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQP----LS-LDCGHSFCQACLTANHKKSML---DKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSSC----BC-CSSSCCBCTTHHHHHHHHHHH---TTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCCc----ee-CCCCCHHHHHHHHHHHHHhhc---CCCCCcCCCCCCccCH
Confidence 35799999987631 11 269999999998654221100 1235678888877753
No 55
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.04 E-value=7 Score=29.36 Aligned_cols=46 Identities=20% Similarity=0.451 Sum_probs=32.0
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
...|.+|...|..- .-..||++||..|...... ....|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNP-----VVTKCRHYFCESCALEHFR---------ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSE-----EECTTSCEEEHHHHHHHHH---------HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCe-----eEccCCCHhHHHHHHHHHH---------CCCcCCCcCcccc
Confidence 45799999877521 1257999999999765421 2446888877764
No 56
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=47.73 E-value=13 Score=26.59 Aligned_cols=13 Identities=31% Similarity=0.651 Sum_probs=10.1
Q ss_pred CCcCccCCcCCCc
Q 015793 150 TTVCMQCTAPFTA 162 (400)
Q Consensus 150 ~~~C~~C~~~F~~ 162 (400)
.-.|..|++.|..
T Consensus 17 ~~~C~~C~k~f~~ 29 (74)
T 2lce_A 17 PYKCDRCQASFRY 29 (74)
T ss_dssp SBCCTTSSCCBSC
T ss_pred CeECCCCCceeCC
Confidence 4579999998863
No 57
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.64 E-value=2.3 Score=30.78 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=32.3
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
...|.+|...|..- .--.||++||..|...... .....|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-----KQTECGHRFCESCMAALLS--------SSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESSC-----CCCSSSCCCCHHHHHHHHT--------TSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcCe-----eECCCCCHHHHHHHHHHHH--------hCcCCCCCCCcCCCh
Confidence 35799998876521 1148999999999765421 234568888777653
No 58
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.03 E-value=3.4 Score=30.90 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=34.4
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
...|.+|...|..- .. -.||++||..|......... .......|-.|...+..
T Consensus 19 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKEP----VS-ADCNHSFCRACITLNYESNR---NTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSSC----EE-CTTSCCBCHHHHHHHHHHSB---CTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCcc----ee-CCCCCHHHHHHHHHHHHhcc---CCCCCCCCCCCCCcCCH
Confidence 35799999887621 12 35999999999865432210 12236788888877653
No 59
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.02 E-value=12 Score=27.90 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=20.7
Q ss_pred CCcCcc--CCcCCCccccccccccccCceEeCC
Q 015793 150 TTVCMQ--CTAPFTALTRGRHHCRFCGGVFCRI 180 (400)
Q Consensus 150 ~~~C~~--C~~~F~~l~rRrHHCR~CG~vfC~~ 180 (400)
...|.. |++. . |+ ..+|+.|+..||..
T Consensus 12 ~~~Cs~~~Ck~~-~-ll--~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 12 TNKCERAGCRQR-E-MM--KLTCERCSRNFCIK 40 (63)
T ss_dssp CCCCCSTTCCCC-C-SS--CCBCSSSCCBCCHH
T ss_pred CCCCCccCCCCC-C-cc--ceECCCCCcccCcc
Confidence 467887 9986 4 32 47999999999964
No 60
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=47.02 E-value=5.5 Score=31.19 Aligned_cols=47 Identities=17% Similarity=0.409 Sum_probs=32.6
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|.+|...|.. ......||+.||..|...... ....|-.|...+..
T Consensus 23 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLS---------YKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHT---------TCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC----cCEECCCCCHhhHHHHHHHHH---------CCCCCCCCCCcCCh
Confidence 579999987762 223347999999999765421 12578888877653
No 61
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=47.01 E-value=14 Score=30.05 Aligned_cols=25 Identities=32% Similarity=0.745 Sum_probs=17.9
Q ss_pred CcCccCCcCCCccccccccccccCce
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGV 176 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v 176 (400)
..|..|+++.. +....+||..|.+-
T Consensus 33 ~~CP~Cq~eL~-~~g~~~hC~~C~~~ 57 (101)
T 2jne_A 33 LHCPQCQHVLD-QDNGHARCRSCGEF 57 (101)
T ss_dssp CBCSSSCSBEE-EETTEEEETTTCCE
T ss_pred ccCccCCCcce-ecCCEEECccccch
Confidence 68999999877 44455667777653
No 62
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=45.88 E-value=5.4 Score=31.82 Aligned_cols=47 Identities=19% Similarity=0.464 Sum_probs=33.0
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|.+|...|.- ....-.||+.||..|...... ....|-.|...+..
T Consensus 16 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLE---------TSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHT---------SCSBCTTTCCBSCS
T ss_pred CCCccCChHHhC----cCEeCCCCChhhHHHHHHHHH---------hCCcCcCCCccccc
Confidence 579999887752 233348999999999765421 12678889887764
No 63
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=45.48 E-value=11 Score=25.25 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=8.7
Q ss_pred CcCccCCcCCCc
Q 015793 151 TVCMQCTAPFTA 162 (400)
Q Consensus 151 ~~C~~C~~~F~~ 162 (400)
-.|..|++.|..
T Consensus 5 ~~C~~C~~~f~~ 16 (57)
T 3uk3_C 5 RECSYCGKFFRS 16 (57)
T ss_dssp CBCTTTCCBCSC
T ss_pred ccCCCCcchhCC
Confidence 468888888853
No 64
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=44.97 E-value=5.8 Score=31.95 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=32.6
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
-.|.+|...|..- .--.||+.||..|...... .....|-.|...+..
T Consensus 16 ~~C~iC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEP-----VTLPCNHTLCKPCFQSTVE--------KASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSC-----EECTTSCEECHHHHCCCCC--------TTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCce-----eEcCCCCHHhHHHHHHHHh--------HCcCCCCCCCcccCc
Confidence 5799999877521 1127999999999765421 123679999887754
No 65
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=44.12 E-value=4.3 Score=34.10 Aligned_cols=46 Identities=20% Similarity=0.532 Sum_probs=31.3
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|.+|...|.- ..--.||+.||..|..... .....|-.|...+..
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~---------~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWM---------KRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHT---------TTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHH---------HcCCcCCCCCCcCCC
Confidence 369999987752 1223699999999975431 123458889877653
No 66
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.25 E-value=5.6 Score=28.51 Aligned_cols=52 Identities=21% Similarity=0.573 Sum_probs=33.3
Q ss_pred CCCcCccCCcCCCccc--cccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 149 STTVCMQCTAPFTALT--RGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 149 ~~~~C~~C~~~F~~l~--rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
+...|.+|...|..-. .+.-.-..||++||..|...... ..+.|-.|...+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH---------HCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH---------cCCCCCCCCCccC
Confidence 3467999999875210 11224568999999999865421 1346777776654
No 67
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=43.05 E-value=4.5 Score=32.49 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=35.1
Q ss_pred CcCccCCcCCCccc----------c---ccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALT----------R---GRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~----------r---RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|.+|...|..-. . ..-..-.||++||..|...+.... .......|-.|...+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~----~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG----NKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT----CCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc----cCCCCCcCCCCCCccCC
Confidence 58999999885210 0 011135699999999987653221 11345689999877653
No 68
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=42.79 E-value=5.3 Score=28.94 Aligned_cols=53 Identities=21% Similarity=0.555 Sum_probs=34.8
Q ss_pred CCCcCccCCcCCCccc--cccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 149 STTVCMQCTAPFTALT--RGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 149 ~~~~C~~C~~~F~~l~--rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
+...|.+|...|..-. .+......||++||..|...... ....|-.|...+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH---------HCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH---------cCCCCCCCCCccCh
Confidence 3468999998875210 11224568999999999865421 12478888877653
No 69
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=42.07 E-value=7.1 Score=32.70 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=19.5
Q ss_pred CCcCccCCc-CCCccccccccccccCceEeCC
Q 015793 150 TTVCMQCTA-PFTALTRGRHHCRFCGGVFCRI 180 (400)
Q Consensus 150 ~~~C~~C~~-~F~~l~rRrHHCR~CG~vfC~~ 180 (400)
...|..|++ .+........||+.||+.|-.-
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEECC
Confidence 367888887 2221222357888888887554
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.07 E-value=8.2 Score=30.01 Aligned_cols=55 Identities=18% Similarity=0.461 Sum_probs=32.0
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccc--cccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDA--CYDR 207 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~--C~~~ 207 (400)
...|.+|-..|.. ..-..-..||+.||..|.......-... +....-.|-. |...
T Consensus 5 ~~~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~~-g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIKE-GLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHHH-CSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhhc-CCcccccCccccCCCC
Confidence 3579999887752 1112223699999999986653321111 1112346777 8766
No 71
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=42.01 E-value=15 Score=28.27 Aligned_cols=28 Identities=25% Similarity=0.640 Sum_probs=21.5
Q ss_pred CCcCcc--CCcCCCccccccccccccCceEeCCC
Q 015793 150 TTVCMQ--CTAPFTALTRGRHHCRFCGGVFCRIC 181 (400)
Q Consensus 150 ~~~C~~--C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (400)
...|.. |++. . |. .-.|+.|+.+||...
T Consensus 14 g~~Cs~~~C~~~-d-fl--pf~C~~C~~~FC~~H 43 (75)
T 1wys_A 14 GQHCQVQHCRQR-D-FL--PFVCDGCSGIFCLEH 43 (75)
T ss_dssp CCCCSCTTTCCC-S-CC--CEECTTTCCEECSTT
T ss_pred CCCcCcccCCCc-c-ce--eeECcccCcCcCccc
Confidence 357887 9886 3 22 578999999999865
No 72
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.96 E-value=8 Score=26.73 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=22.8
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCce
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~ 185 (400)
...|.+|...|..- .--.||++||..|....
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-----VIIECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCcc-----EeCCCCCccCHHHHHHH
Confidence 46799999887621 11479999999997654
No 73
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=41.84 E-value=4 Score=40.97 Aligned_cols=50 Identities=16% Similarity=0.381 Sum_probs=34.9
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQ 212 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~~q 212 (400)
...|.+|...+. ....-.||++||..|...... ...+.|-.|...+....
T Consensus 332 ~~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~--------~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQE--------SEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHH--------HTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHh--------cCCCCCCCCCCccCCce
Confidence 368999988664 234468999999999854311 13467999988776543
No 74
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=41.45 E-value=5 Score=28.32 Aligned_cols=52 Identities=19% Similarity=0.547 Sum_probs=33.8
Q ss_pred CCcCccCCcCCCcc--ccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTAL--TRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l--~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
...|.+|...|..- ..+.-....||++||..|...... ....|-.|...+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH---------HCSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH---------cCCCCCCCCccCCc
Confidence 35799999877521 012224568999999999865421 13478888777653
No 75
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=41.38 E-value=14 Score=24.71 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=7.6
Q ss_pred cCccCCcCCC
Q 015793 152 VCMQCTAPFT 161 (400)
Q Consensus 152 ~C~~C~~~F~ 161 (400)
.|..|++.|.
T Consensus 3 ~C~~C~~~f~ 12 (57)
T 1bbo_A 3 ICEECGIRXK 12 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcCcCC
Confidence 5778888885
No 76
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.24 E-value=11 Score=26.80 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=16.7
Q ss_pred CcCccCCcC-CCccccccccccccCceE
Q 015793 151 TVCMQCTAP-FTALTRGRHHCRFCGGVF 177 (400)
Q Consensus 151 ~~C~~C~~~-F~~l~rRrHHCR~CG~vf 177 (400)
..|..|+.. |-.-...|++|..||.++
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 568888763 321123477888888764
No 77
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.08 E-value=8.8 Score=30.40 Aligned_cols=48 Identities=17% Similarity=0.445 Sum_probs=31.5
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (400)
..|.+|...|..- .--.||+.||..|....... ......|-.|...+.
T Consensus 22 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP-----VSTKCDHIFCKFCMLKLLNQ------KKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC-----CBCTTSCCCCSHHHHHHHHS------SSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe-----EECCCCCHHHHHHHHHHHHh------CCCCCCCcCCCCcCC
Confidence 4799998877521 11379999999997654221 112357888877664
No 78
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=39.86 E-value=15 Score=24.98 Aligned_cols=10 Identities=50% Similarity=1.089 Sum_probs=7.6
Q ss_pred cCccCCcCCC
Q 015793 152 VCMQCTAPFT 161 (400)
Q Consensus 152 ~C~~C~~~F~ 161 (400)
.|..|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (60)
T 2adr_A 4 VCEVCTRAFA 13 (60)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCccccC
Confidence 5778888775
No 79
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=38.67 E-value=11 Score=28.86 Aligned_cols=48 Identities=21% Similarity=0.563 Sum_probs=31.6
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (400)
.-.|.+|...|.- -..-..||+.||..|......- .....|-.|...+
T Consensus 13 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHH-------CTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHh-------cCCCcCcCCCCcC
Confidence 4679999987752 2223349999999997654211 1235788888765
No 80
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=37.52 E-value=7.4 Score=27.44 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=7.8
Q ss_pred CcCccCCcCCC
Q 015793 151 TVCMQCTAPFT 161 (400)
Q Consensus 151 ~~C~~C~~~F~ 161 (400)
-.|..|++.|.
T Consensus 15 ~~C~~C~k~F~ 25 (62)
T 1vd4_A 15 FKCPVCSSTFT 25 (62)
T ss_dssp EECSSSCCEEE
T ss_pred ccCCCCCchhc
Confidence 45777887775
No 81
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.25 E-value=18 Score=27.07 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=17.6
Q ss_pred CCcCccCCcCCCccccccccccccCc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGG 175 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~ 175 (400)
.-.|..|+..|..-....-.|+.||.
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCc
Confidence 36799999999832223466777764
No 82
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=36.49 E-value=5.4 Score=32.63 Aligned_cols=54 Identities=20% Similarity=0.504 Sum_probs=38.3
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccccccccccccchhh
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLI 216 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~~q~~l~ 216 (400)
..|..|..+|. .. ..--.|.++||..|..... .+....|..|.+.+..++....
T Consensus 2 hfC~~C~~Pi~-iy---gRmIPCkHvFCydCa~~~~--------~~~~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 2 HFCDKCGLPIK-VY---GRMIPCKHVFCYDCAILHE--------KKGDKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp CBCTTTCSBCS-EE---EEEETTCCEEEHHHHHHHH--------HTTCCBCTTTCCBCSEEEEEEG
T ss_pred eecCccCCCeE-EE---eeeccccccHHHHHHHHHH--------hccCCCCcCcCCeeeeeEEecc
Confidence 46999999998 43 3345788899999974321 1346789999988887766543
No 83
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=35.42 E-value=12 Score=27.46 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=16.8
Q ss_pred CcCccCCcCCCccccccccccccC
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCG 174 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG 174 (400)
..|+.|..... -|-.+||.||
T Consensus 20 ~ICrkC~ARnp---~~A~~CRKCg 40 (56)
T 2ayj_A 20 KVCRKCGALNP---IRATKCRRCH 40 (56)
T ss_dssp EEETTTCCEEC---TTCSSCTTTC
T ss_pred hhhccccCcCC---cccccccCCC
Confidence 57888988776 3689999887
No 84
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.92 E-value=38 Score=24.16 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=9.9
Q ss_pred CCcCccCCcCCCc
Q 015793 150 TTVCMQCTAPFTA 162 (400)
Q Consensus 150 ~~~C~~C~~~F~~ 162 (400)
.-.|..|++.|..
T Consensus 18 ~~~C~~C~~~f~~ 30 (77)
T 2cot_A 18 RYKCDECGKSFSH 30 (77)
T ss_dssp SSBCSSSCCBCSC
T ss_pred CEECCCCCcccCC
Confidence 4578899998863
No 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.46 E-value=15 Score=25.94 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=7.1
Q ss_pred CcCccCCcCCC
Q 015793 151 TVCMQCTAPFT 161 (400)
Q Consensus 151 ~~C~~C~~~F~ 161 (400)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (70)
T 1x5w_A 10 EKCSECSYSCS 20 (70)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 35777777665
No 86
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=33.13 E-value=10 Score=31.49 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=6.3
Q ss_pred CCccccCCCCCcCccCCcCCCcccc---------ccccc----cccCceEeCCCCCceeecCccCCCCcceEeccccccc
Q 015793 141 PPEWLPDSSTTVCMQCTAPFTALTR---------GRHHC----RFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (400)
Q Consensus 141 ~p~W~pd~~~~~C~~C~~~F~~l~r---------RrHHC----R~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (400)
...|.-|.....|.+|...|...-. ....| -.||++|+..|...... ...+|-.|...
T Consensus 39 va~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~---------~~~~CP~Cr~~ 109 (117)
T 4a0k_B 39 VALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---------TRQVCPLDNRE 109 (117)
T ss_dssp EEEEEECCCC----------------------------------------------------------------------
T ss_pred EEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH---------cCCcCCCCCCe
Confidence 3456667777899999999862100 01112 26999999999876521 13567777654
No 87
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.96 E-value=16 Score=26.00 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=7.8
Q ss_pred CcCccCCcCCC
Q 015793 151 TVCMQCTAPFT 161 (400)
Q Consensus 151 ~~C~~C~~~F~ 161 (400)
-.|..|.+.|.
T Consensus 15 ~~C~~C~k~f~ 25 (72)
T 1x6e_A 15 YGCVECGKAFS 25 (72)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCCccC
Confidence 45777777775
No 88
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.75 E-value=15 Score=24.74 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=8.0
Q ss_pred CcCccCCcCCC
Q 015793 151 TVCMQCTAPFT 161 (400)
Q Consensus 151 ~~C~~C~~~F~ 161 (400)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (54)
T 2eps_A 13 YICQSCGKGFS 23 (54)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 45788888775
No 89
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.63 E-value=18 Score=28.07 Aligned_cols=32 Identities=28% Similarity=0.659 Sum_probs=22.3
Q ss_pred cCccCCcCCCcc-ccccccccccCceEeCCCCC
Q 015793 152 VCMQCTAPFTAL-TRGRHHCRFCGGVFCRICTK 183 (400)
Q Consensus 152 ~C~~C~~~F~~l-~rRrHHCR~CG~vfC~~CS~ 183 (400)
-|..|+..|..- ..++..|..||..||..|-.
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 366777755210 12457899999999999974
No 90
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.44 E-value=14 Score=28.35 Aligned_cols=11 Identities=27% Similarity=0.636 Sum_probs=9.0
Q ss_pred CcCccCCcCCC
Q 015793 151 TVCMQCTAPFT 161 (400)
Q Consensus 151 ~~C~~C~~~F~ 161 (400)
-.|..|++.|.
T Consensus 25 ~~C~~C~k~f~ 35 (98)
T 2gqj_A 25 AVCPTCNVVTR 35 (98)
T ss_dssp CCCTTTCCCCS
T ss_pred cCCCCCCCChh
Confidence 57888998887
No 91
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.09 E-value=15 Score=28.56 Aligned_cols=11 Identities=27% Similarity=0.458 Sum_probs=8.9
Q ss_pred CcCccCCcCC-C
Q 015793 151 TVCMQCTAPF-T 161 (400)
Q Consensus 151 ~~C~~C~~~F-~ 161 (400)
-.|..|++.| .
T Consensus 35 ~~C~~C~k~F~~ 46 (96)
T 2ctd_A 35 VSCPTCQAVGRK 46 (96)
T ss_dssp EECTTTCSCEES
T ss_pred cCCCCCCCCccc
Confidence 4788999988 5
No 92
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=30.99 E-value=4.9 Score=32.60 Aligned_cols=54 Identities=22% Similarity=0.576 Sum_probs=34.7
Q ss_pred CCCCcCccCCcCCCccc--cccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 148 SSTTVCMQCTAPFTALT--RGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 148 ~~~~~C~~C~~~F~~l~--rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
.+...|.+|...|.... .+.-..-.||++||..|..... ...+.|-.|...+.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~---------~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---------KNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH---------HHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHH---------HcCCCCCCCCCcCCh
Confidence 34567888888775321 1122455799999999976542 123578888877754
No 93
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=30.66 E-value=24 Score=34.59 Aligned_cols=44 Identities=20% Similarity=0.514 Sum_probs=31.7
Q ss_pred CCcCccCCcCCCccccccccccccCce-EeCCCCCceeecCccCCCCcceEeccccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGV-FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~v-fC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (400)
...|.+|...|.-. ---.||+. ||..|.... +.|-.|...+...
T Consensus 295 ~~~C~IC~~~~~~~-----v~lpCgH~~fC~~C~~~~-------------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV-----VFIPCGHLVVCQECAPSL-------------RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSBCCE-----EEETTCCEEECTTTGGGC-------------SBCTTTCCBCCEE
T ss_pred CCCCCccCCcCCce-----EEcCCCChhHhHHHHhcC-------------CcCCCCCCCccCe
Confidence 36799998877522 22379999 999997521 6788898877654
No 94
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.50 E-value=24 Score=34.22 Aligned_cols=62 Identities=19% Similarity=0.495 Sum_probs=37.9
Q ss_pred CCcCccCCcCC--Ccc-------ccccccccccCc------eEeCCCCCceeecCccCC--------CCcceEecccccc
Q 015793 150 TTVCMQCTAPF--TAL-------TRGRHHCRFCGG------VFCRICTKGRCLLPVRFR--------ERNPQRVCDACYD 206 (400)
Q Consensus 150 ~~~C~~C~~~F--~~l-------~rRrHHCR~CG~------vfC~~CS~~~~~lP~~~~--------~~~p~RVC~~C~~ 206 (400)
...|..|+..= +.+ ..|..||-.||. +-|..|-+.+..--.... ....+-+|+.|..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~ 261 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQG 261 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccc
Confidence 47899999852 211 225789999985 478888764321100111 2234669999998
Q ss_pred ccccc
Q 015793 207 RLDPL 211 (400)
Q Consensus 207 ~l~~~ 211 (400)
.++.+
T Consensus 262 YlK~~ 266 (309)
T 2fiy_A 262 YLKQF 266 (309)
T ss_dssp EEEEE
T ss_pred hHhhh
Confidence 77543
No 95
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.10 E-value=17 Score=26.11 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=7.0
Q ss_pred CcCccCCcCCC
Q 015793 151 TVCMQCTAPFT 161 (400)
Q Consensus 151 ~~C~~C~~~F~ 161 (400)
-.|..|++.|.
T Consensus 8 ~~C~~C~k~f~ 18 (78)
T 2d9h_A 8 LQCEICGFTCR 18 (78)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCeeC
Confidence 35677777664
No 96
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=30.01 E-value=19 Score=28.48 Aligned_cols=28 Identities=29% Similarity=0.629 Sum_probs=21.1
Q ss_pred CCcCcc--CCcCCCccccccccccccCceEeCCC
Q 015793 150 TTVCMQ--CTAPFTALTRGRHHCRFCGGVFCRIC 181 (400)
Q Consensus 150 ~~~C~~--C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (400)
...|.. |++. . |. ..+|+.||..||...
T Consensus 25 ~~~C~~~~Ck~~-~-~l--~f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 25 SYSCSFKGCTDV-E-LV--AVICPYCEKNFCLRH 54 (86)
T ss_dssp CEECCSTTCCCE-E-SS--CEECTTTCCEECGGG
T ss_pred CCCCCCcCCCCC-C-cc--ceECCCCCccccccc
Confidence 357887 9886 3 22 479999999999764
No 97
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.75 E-value=40 Score=24.51 Aligned_cols=35 Identities=26% Similarity=0.602 Sum_probs=24.8
Q ss_pred CCcCccCCcCCCcc-ccccccccc--cCceEeCCCCCc
Q 015793 150 TTVCMQCTAPFTAL-TRGRHHCRF--CGGVFCRICTKG 184 (400)
Q Consensus 150 ~~~C~~C~~~F~~l-~rRrHHCR~--CG~vfC~~CS~~ 184 (400)
...|..|+...-.. .--.-.|+. |+..||..|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~ 43 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSC
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCC
Confidence 46799999866421 112457888 999999999754
No 98
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=28.90 E-value=21 Score=32.49 Aligned_cols=48 Identities=6% Similarity=-0.161 Sum_probs=31.1
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
.-.|.+|...|. .-..-.||+.||..|......- . ...|-.|...+..
T Consensus 208 ~~~c~i~~~~~~-----dPv~~~~gh~f~~~~i~~~~~~------~--~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 208 YLCGKISFELMR-----EPCITPSGITYDRKDIEEHLQR------V--GHFNPVTRSPLTQ 255 (281)
T ss_dssp TTBCTTTCSBCS-----SEEECSSCCEEETTHHHHHHHH------T--CSSCTTTCCCCCG
T ss_pred ccCCcCcCCHhc-----CCeECCCCCEECHHHHHHHHHH------C--CCCCcCCCCCCch
Confidence 357888888664 2334569999999997654211 0 1128888877754
No 99
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.81 E-value=20 Score=29.42 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=6.5
Q ss_pred CcCccCCcCC
Q 015793 151 TVCMQCTAPF 160 (400)
Q Consensus 151 ~~C~~C~~~F 160 (400)
..|..|+-.|
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 3577777666
No 100
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=28.52 E-value=24 Score=24.63 Aligned_cols=29 Identities=31% Similarity=0.658 Sum_probs=16.5
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCC
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICT 182 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS 182 (400)
...|..|+..-+.+.||-- =|..+|++|.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp----~G~~LCNaCG 32 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDR----TGHYLCNACG 32 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCT----TCCCBCSHHH
T ss_pred CCCCCCcCCCCCCcCccCC----CCCccchHHH
Confidence 4568888877776654422 1445555553
No 101
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=28.27 E-value=17 Score=31.10 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=32.3
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|.+|...|.-- .--.||+.||..|...... .....|-.|...+..
T Consensus 79 ~~C~IC~~~~~~p-----v~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQP-----VTTECFHNVCKDCLQRSFK--------AQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSSE-----EECTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcCC-----EEcCCCCchhHHHHHHHHH--------hCCCcCCCCCccCCC
Confidence 5799998877521 1148999999999765421 123468888877754
No 102
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=28.13 E-value=11 Score=28.11 Aligned_cols=43 Identities=23% Similarity=0.585 Sum_probs=30.1
Q ss_pred CcCccCCcCCCccccccccccccCce-EeCCCCCceeecCccCCCCcceEeccccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGV-FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-fC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (400)
..|.+|...|... ---.||+. ||..|.... +.|-.|...+...
T Consensus 25 ~~C~iC~~~~~~~-----~~~pCgH~~~C~~C~~~~-------------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 25 KLCKICMDRNIAI-----VFVPCGHLVTCKQCAEAV-------------DKCPMCYTVITFK 68 (74)
T ss_dssp TBCTTTSSSBCCE-----EEETTCCBCCCHHHHTTC-------------SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCE-----EEcCCCChhHHHHhhhcC-------------ccCCCcCcCccCc
Confidence 4799998866522 22479999 999996532 6777887776554
No 103
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.08 E-value=20 Score=30.86 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=11.6
Q ss_pred CcCccCCcCCCccccccccccccCc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGG 175 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~ 175 (400)
-.|..|++.|..+ .....|..||.
T Consensus 133 y~C~~Cg~~~~~~-~~~~~Cp~CG~ 156 (165)
T 2lcq_A 133 YVCIGCGRKFSTL-PPGGVCPDCGS 156 (165)
T ss_dssp EEESSSCCEESSC-CGGGBCTTTCC
T ss_pred EECCCCCCcccCC-CCCCcCCCCCC
Confidence 3566666666522 22234444443
No 104
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.96 E-value=11 Score=26.85 Aligned_cols=51 Identities=18% Similarity=0.442 Sum_probs=30.9
Q ss_pred CcCccCCc-CCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTA-PFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~-~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
..|.+|.. .|..- .++..=..||++||..|...... .....|-.|...+..
T Consensus 4 ~~C~IC~~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNP-SLKLMVNVCGHTLCESCVDLLFV--------RGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCS-SCCEEECTTCCCEEHHHHHHHHH--------TTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCC-ccCeecCCCCCHhHHHHHHHHHH--------cCCCcCCCCCCcccc
Confidence 46999987 55411 11111247999999999865421 113467788777653
No 105
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=25.69 E-value=33 Score=33.31 Aligned_cols=35 Identities=23% Similarity=0.511 Sum_probs=18.2
Q ss_pred CccccCCC-CCcCccCCcC-----CCccccccccccccCceE
Q 015793 142 PEWLPDSS-TTVCMQCTAP-----FTALTRGRHHCRFCGGVF 177 (400)
Q Consensus 142 p~W~pd~~-~~~C~~C~~~-----F~~l~rRrHHCR~CG~vf 177 (400)
..|.||-. ...|..|+.. +. ..+.---|..||.|+
T Consensus 12 ~~~~~~~~~~~~Cp~Cg~~~~~iv~D-~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 12 GRRGPNLNIVLTCPECKVYPPKIVER-FSEGDVVCALCGLVL 52 (345)
T ss_dssp -----CCCCCCCCSTTCCSCCCCCCC-SSSCSCCCSSSCCCC
T ss_pred cccCccccCCCcCcCCCCCCCceEEE-CCCCCEecCCCCeEc
Confidence 34777655 5679999874 22 123345666776665
No 106
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.55 E-value=27 Score=24.97 Aligned_cols=23 Identities=39% Similarity=0.842 Sum_probs=14.6
Q ss_pred CcCccCCcCCCccccccccccccCce
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGV 176 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v 176 (400)
..|+.|+..-. .+.-+||.||..
T Consensus 15 ~iCpkC~a~~~---~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGATNP---WGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCEEC---TTCSSCSSSSSC
T ss_pred ccCCCCCCcCC---CCceecCCCCCc
Confidence 46777777522 356777777763
No 107
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.53 E-value=15 Score=27.36 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=30.0
Q ss_pred CcCccCCcCCCccccccccccccCce-EeCCCCCceeecCccCCCCcceEeccccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGV-FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-fC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (400)
..|.+|...|.. .---.||+. ||..|... .+.|-.|...+...
T Consensus 26 ~~C~IC~~~~~~-----~~~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 26 KLCKICMDRNIA-----IVFVPCGHLVTCKQCAEA-------------VDKCPMCYTVITFK 69 (75)
T ss_dssp HSCSSSCSSCCC-----BCCSSSCCCCBCHHHHHH-------------CSBCTTTCCBCCCC
T ss_pred CCCCcCCCCCCC-----EEEecCCCHHHHHHHhhC-------------CCCCccCCceecCc
Confidence 469999887652 222479999 99999731 25688888777653
No 108
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=25.27 E-value=20 Score=30.37 Aligned_cols=45 Identities=20% Similarity=0.526 Sum_probs=31.0
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (400)
-.|.+|...|.-- .. -.||+.||..|...... .....|-.|...+
T Consensus 32 ~~C~IC~~~~~~p----v~-~~CgH~FC~~Ci~~~~~--------~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLRRP----FQ-AQCGHRYCSFCLASILS--------SGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCSSE----EE-CTTSCEEEHHHHHHHGG--------GSCEECHHHHHTT
T ss_pred cCCCCCChhhcCc----EE-CCCCCccCHHHHHHHHh--------cCCCCCCCCCCcc
Confidence 5799999877521 22 38999999999765421 2235788887754
No 109
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=25.01 E-value=12 Score=23.48 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=12.9
Q ss_pred cchHHHHhhhhheeee
Q 015793 63 EVNLKNVLSGIFAIIT 78 (400)
Q Consensus 63 ~~~~~~~~~~~~~~~t 78 (400)
+-++|+|+.|+++++|
T Consensus 2 khtiweviaglvallt 17 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLT 17 (32)
T ss_dssp CSSSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 4578999999998764
No 110
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.59 E-value=19 Score=34.27 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEeccc--ccccccc
Q 015793 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDA--CYDRLDP 210 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~--C~~~l~~ 210 (400)
.-.|.+|...|.- -.-...||++||..|-..... ......|-. |...+..
T Consensus 181 el~CPIcl~~f~D----PVts~~CGHsFcR~cI~~~~~-------~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYEA----PLISRKCNHVFDRDGIQNYLQ-------GYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCSS----EEEESSSCCEEEHHHHHHHST-------TCSCEECSGGGCSCEECG
T ss_pred eeECcCccCcccC----CeeeCCCCCcccHHHHHHHHH-------hCCCCCCCcccccCcCch
Confidence 3579999997752 122357999999999754321 123478888 8887653
No 111
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.47 E-value=21 Score=27.97 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=15.1
Q ss_pred CcCccCCcCC--CccccccccccccCceEeCC
Q 015793 151 TVCMQCTAPF--TALTRGRHHCRFCGGVFCRI 180 (400)
Q Consensus 151 ~~C~~C~~~F--~~l~rRrHHCR~CG~vfC~~ 180 (400)
..|..|+..- . ......+|..||..|-.-
T Consensus 28 y~Cp~CG~~~v~r-~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 28 HACPNCGEDRVDR-QGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp EECSSSCCEEEEE-EETTEEEETTTCCEEECC
T ss_pred CcCCCCCCcceec-cCCCeEECCCCCCEecCC
Confidence 4577777621 1 112246666666665443
No 112
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.12 E-value=28 Score=23.97 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=4.5
Q ss_pred CcCccCCc
Q 015793 151 TVCMQCTA 158 (400)
Q Consensus 151 ~~C~~C~~ 158 (400)
..|..|+.
T Consensus 6 ~~CP~C~~ 13 (50)
T 1pft_A 6 KVCPACES 13 (50)
T ss_dssp CSCTTTSC
T ss_pred EeCcCCCC
Confidence 34666655
No 113
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=24.09 E-value=72 Score=24.24 Aligned_cols=34 Identities=29% Similarity=0.736 Sum_probs=22.7
Q ss_pred CCcCcc--CCcCCCc-ccccccccc-----ccCceEeCCCCC
Q 015793 150 TTVCMQ--CTAPFTA-LTRGRHHCR-----FCGGVFCRICTK 183 (400)
Q Consensus 150 ~~~C~~--C~~~F~~-l~rRrHHCR-----~CG~vfC~~CS~ 183 (400)
..-|.. |+..... -..++-.|. .||..||..|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~ 66 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKE 66 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTE
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCc
Confidence 445654 6664421 023567897 899999999974
No 114
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.98 E-value=22 Score=23.09 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=8.2
Q ss_pred CcCccCCcCCC
Q 015793 151 TVCMQCTAPFT 161 (400)
Q Consensus 151 ~~C~~C~~~F~ 161 (400)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (48)
T 2epr_A 13 VACEICGKIFR 23 (48)
T ss_dssp EEETTTTEEES
T ss_pred eeCCCCCcccC
Confidence 46888888875
No 115
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=23.82 E-value=29 Score=26.59 Aligned_cols=28 Identities=29% Similarity=0.562 Sum_probs=17.5
Q ss_pred CCcCccCCcCCCcccc---ccccccccCceEeC
Q 015793 150 TTVCMQCTAPFTALTR---GRHHCRFCGGVFCR 179 (400)
Q Consensus 150 ~~~C~~C~~~F~~l~r---RrHHCR~CG~vfC~ 179 (400)
...|..|++. . +.| .--+|+.||+.|-.
T Consensus 27 ky~C~fCgk~-~-vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 27 KYKCPVCGFP-K-LKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred CccCCCCCCc-e-eEEEEeEEEECCCCCcEEEC
Confidence 4678889873 2 211 23578888887644
No 116
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=23.53 E-value=38 Score=27.97 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=9.7
Q ss_pred cceEeccccccc
Q 015793 196 NPQRVCDACYDR 207 (400)
Q Consensus 196 ~p~RVC~~C~~~ 207 (400)
-.++||+.|.+.
T Consensus 24 F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 24 FDLPTCDDCRDA 35 (111)
T ss_dssp TSCCCCTTTCSS
T ss_pred CCeeechhhccc
Confidence 468999999875
No 117
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.15 E-value=30 Score=24.80 Aligned_cols=11 Identities=45% Similarity=0.842 Sum_probs=7.6
Q ss_pred CcCccCCcCCC
Q 015793 151 TVCMQCTAPFT 161 (400)
Q Consensus 151 ~~C~~C~~~F~ 161 (400)
-.|..|++.|.
T Consensus 16 ~~C~~C~k~f~ 26 (77)
T 2ct1_A 16 YECYICHARFT 26 (77)
T ss_dssp EECTTTCCEES
T ss_pred eECCCcCchhC
Confidence 45777777775
No 118
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.68 E-value=35 Score=26.86 Aligned_cols=26 Identities=23% Similarity=0.685 Sum_probs=17.3
Q ss_pred CcCccCCcCCCccccc----cccccccCceEeC
Q 015793 151 TVCMQCTAPFTALTRG----RHHCRFCGGVFCR 179 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rR----rHHCR~CG~vfC~ 179 (400)
..|..|++. . + +| --||+.||+.|-.
T Consensus 36 y~CpfCGk~-~-v-kR~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 36 HTCPVCGRK-A-V-KRISTGIWQCQKCGATFAG 65 (83)
T ss_dssp BCCSSSCSS-C-E-EEEETTEEEETTTCCEEEC
T ss_pred cCCCCCCCc-e-e-EecCcCeEEcCCCCCEEeC
Confidence 578888875 3 3 23 2478888887744
No 119
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.21 E-value=32 Score=18.85 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=7.0
Q ss_pred cccccccCceE
Q 015793 167 RHHCRFCGGVF 177 (400)
Q Consensus 167 rHHCR~CG~vf 177 (400)
.+.|..||+.|
T Consensus 3 ~~~C~~C~k~f 13 (27)
T 2kvh_A 3 PFSCSLCPQRS 13 (27)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCcChhh
Confidence 45677777665
No 120
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.10 E-value=47 Score=23.40 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=15.2
Q ss_pred cCccCCcCCCcccc---ccccccccCc
Q 015793 152 VCMQCTAPFTALTR---GRHHCRFCGG 175 (400)
Q Consensus 152 ~C~~C~~~F~~l~r---RrHHCR~CG~ 175 (400)
.|..|++.|+.--. ---+|..||.
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCc
Confidence 68899998873211 1356777764
No 121
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.89 E-value=31 Score=28.27 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=5.9
Q ss_pred cCccCCcCCC
Q 015793 152 VCMQCTAPFT 161 (400)
Q Consensus 152 ~C~~C~~~F~ 161 (400)
.|..|+..|.
T Consensus 75 ~C~~CG~~~e 84 (119)
T 2kdx_A 75 ECKDCSHVFK 84 (119)
T ss_dssp ECSSSSCEEC
T ss_pred EcCCCCCEEe
Confidence 4666666655
No 122
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.81 E-value=58 Score=23.95 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=9.0
Q ss_pred CcCccCCcCCC
Q 015793 151 TVCMQCTAPFT 161 (400)
Q Consensus 151 ~~C~~C~~~F~ 161 (400)
-.|..|++.|.
T Consensus 9 ~~C~~C~~~f~ 19 (96)
T 2dmd_A 9 HKCEVCGKCFS 19 (96)
T ss_dssp CCBTTTTBCCC
T ss_pred eECCCCCCccC
Confidence 46889999885
No 123
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.78 E-value=30 Score=18.93 Aligned_cols=8 Identities=25% Similarity=0.829 Sum_probs=3.3
Q ss_pred cccccCce
Q 015793 169 HCRFCGGV 176 (400)
Q Consensus 169 HCR~CG~v 176 (400)
.|..||+.
T Consensus 4 ~C~~C~~~ 11 (29)
T 2m0e_A 4 KCPHCDKK 11 (29)
T ss_dssp CCSSCCCC
T ss_pred cCCCCCcc
Confidence 34444443
No 124
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=21.55 E-value=21 Score=23.26 Aligned_cols=10 Identities=50% Similarity=1.354 Sum_probs=7.5
Q ss_pred cccccccCce
Q 015793 167 RHHCRFCGGV 176 (400)
Q Consensus 167 rHHCR~CG~v 176 (400)
+.|||.|-+-
T Consensus 9 kqhcrfckkk 18 (37)
T 2elu_A 9 KQHCRFCKKK 18 (37)
T ss_dssp CCEETTTTEE
T ss_pred HHHHHHHHHH
Confidence 6889988653
No 125
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=21.25 E-value=43 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=15.9
Q ss_pred CcCccCCcCCCccccc----cccccccCceEeC
Q 015793 151 TVCMQCTAPFTALTRG----RHHCRFCGGVFCR 179 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rR----rHHCR~CG~vfC~ 179 (400)
..|..|++. . + +| --||+.||..|-.
T Consensus 37 y~CpfCgk~-~-v-kR~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 37 YFCEFCGKF-A-V-KRKAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp BCCTTTCSS-C-B-EEEETTEEECSSSCCEEEC
T ss_pred ccCcccCCC-e-e-EecCcceEEcCCCCCEEeC
Confidence 568888874 3 3 22 2477777777644
No 126
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=21.12 E-value=41 Score=26.07 Aligned_cols=30 Identities=30% Similarity=0.692 Sum_probs=19.7
Q ss_pred CcCccCCcCCCccccccccccccCc----eEeCCCC
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGG----VFCRICT 182 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~----vfC~~CS 182 (400)
-.|..|++.- +.-+|.+|..|-. -+|..|-
T Consensus 22 ~~Cd~C~~~p--I~G~RykC~~C~d~~~yDLC~~C~ 55 (82)
T 2fc7_A 22 FKCDNCGIEP--IQGVRWHCQDCPPEMSLDFCDSCS 55 (82)
T ss_dssp CCCSSSCCSS--EESCEEEESSSCSSSCCEEEGGGT
T ss_pred CCCCCCCCCc--ceeceEECCcCCCCcceecHHHHH
Confidence 4699998621 2336899988854 4666664
No 127
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=21.10 E-value=29 Score=28.00 Aligned_cols=59 Identities=19% Similarity=0.341 Sum_probs=36.9
Q ss_pred CCccccCCCCCcCccCCcCCCcccc---------ccccc----cccCceEeCCCCCceeecCccCCCCcceEeccccccc
Q 015793 141 PPEWLPDSSTTVCMQCTAPFTALTR---------GRHHC----RFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (400)
Q Consensus 141 ~p~W~pd~~~~~C~~C~~~F~~l~r---------RrHHC----R~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (400)
...|.-|.+...|.+|...|..--. ....| -.||++|+..|...... ....|-.|...
T Consensus 28 v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---------~~~~CP~Cr~~ 98 (106)
T 3dpl_R 28 VALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---------TRQVCPLDNRE 98 (106)
T ss_dssp EEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT---------TCSBCSSSCSB
T ss_pred eeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH---------cCCcCcCCCCc
Confidence 3457667777899999998872100 00111 36999999999765521 13467777665
Q ss_pred c
Q 015793 208 L 208 (400)
Q Consensus 208 l 208 (400)
.
T Consensus 99 ~ 99 (106)
T 3dpl_R 99 W 99 (106)
T ss_dssp C
T ss_pred c
Confidence 3
No 128
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=21.08 E-value=26 Score=28.28 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=32.0
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCceeecCccCCCCcceEecccccccccc
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (400)
-.|.+|...|..- .. -.||++||..|....... ....|-.|...+..
T Consensus 19 ~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALREA----VQ-TPCGHRFCKACIIKSIRD--------AGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCSSE----EE-CTTSCEEEHHHHHHHHHH--------HCSBCTTTCCBCCG
T ss_pred CCCCcCChhhcCe----EE-CCcCChhhHHHHHHHHhh--------CCCCCCCCCCCcCH
Confidence 5799999877621 22 269999999997654211 11278888877764
No 129
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=20.48 E-value=36 Score=23.37 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=6.8
Q ss_pred cCccCCcCCC
Q 015793 152 VCMQCTAPFT 161 (400)
Q Consensus 152 ~C~~C~~~F~ 161 (400)
.|..|++.|.
T Consensus 12 ~C~~C~k~f~ 21 (66)
T 2drp_A 12 RCKVCSRVYT 21 (66)
T ss_dssp ECTTTCCEES
T ss_pred ECCCCcchhC
Confidence 5777777775
No 130
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=20.16 E-value=41 Score=24.62 Aligned_cols=6 Identities=67% Similarity=1.680 Sum_probs=2.5
Q ss_pred ccccCc
Q 015793 170 CRFCGG 175 (400)
Q Consensus 170 CR~CG~ 175 (400)
||.||+
T Consensus 20 CrRCG~ 25 (57)
T 1vq8_1 20 CRRCGE 25 (57)
T ss_dssp CTTTCS
T ss_pred ccccCC
Confidence 444443
No 131
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.14 E-value=28 Score=27.10 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=21.3
Q ss_pred CcCccCCcCCCccccccccccccCceEeCCCCCce
Q 015793 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185 (400)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~CS~~~ 185 (400)
-.|.+|...|.- -.--..||++||..|....
T Consensus 8 ~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~~ 38 (94)
T 2yu4_A 8 FTCPITKEEMKK----PVKNKVCGHTYEEDAIVRM 38 (94)
T ss_dssp CBCTTTCSBCSS----EEEESSSCCEEEHHHHHHH
T ss_pred eECcCcCchhcC----CEEcCCCCCeecHHHHHHH
Confidence 569999886651 1222259999999997554
No 132
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.14 E-value=38 Score=18.62 Aligned_cols=12 Identities=33% Similarity=0.838 Sum_probs=7.5
Q ss_pred cccccccCceEe
Q 015793 167 RHHCRFCGGVFC 178 (400)
Q Consensus 167 rHHCR~CG~vfC 178 (400)
.+.|..||+.|-
T Consensus 3 ~~~C~~C~k~f~ 14 (28)
T 2kvf_A 3 PYSCSVCGKRFS 14 (28)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCCCcccC
Confidence 456777777653
No 133
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.10 E-value=37 Score=18.68 Aligned_cols=12 Identities=33% Similarity=1.043 Sum_probs=7.7
Q ss_pred cccccccCceEe
Q 015793 167 RHHCRFCGGVFC 178 (400)
Q Consensus 167 rHHCR~CG~vfC 178 (400)
.+.|..||+.|-
T Consensus 3 ~~~C~~C~~~f~ 14 (30)
T 2m0d_A 3 PYQCDYCGRSFS 14 (30)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCcccC
Confidence 456777777663
No 134
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=20.01 E-value=30 Score=27.39 Aligned_cols=11 Identities=27% Similarity=0.630 Sum_probs=6.1
Q ss_pred cccccccCceE
Q 015793 167 RHHCRFCGGVF 177 (400)
Q Consensus 167 rHHCR~CG~vf 177 (400)
.+.|..||+.|
T Consensus 74 ~~~C~~C~k~f 84 (129)
T 2wbt_A 74 QFVCPLCLMPF 84 (129)
T ss_dssp SEECTTTCCEE
T ss_pred CeECCCCCccc
Confidence 34466666655
Done!