BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015794
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/312 (59%), Positives = 235/312 (75%)
Query: 87 DLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIG 146
+++VA DGSG++ T++EAV AAP S TR+VI IKAG Y ENV+V KKK +MF+GDG
Sbjct: 8 NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRT 67
Query: 147 KTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFY 206
T++ A+++V DG TTF SATVA VG GF+A+ IT +N+AG +KHQAVALR GSDLSAFY
Sbjct: 68 STIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFY 127
Query: 207 KCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITA 266
+C + YQD+LYVHS RQF+ C + GTVDFIFGNAAVV Q C+++AR+P + QKN++TA
Sbjct: 128 RCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTA 187
Query: 267 QGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPA 326
QGR DPNQNTGI I ++ A SDL P Q+ F TYLGRPWKEYSRTV M S + ++I PA
Sbjct: 188 QGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPA 247
Query: 327 GWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEW 386
GW W+G FAL TL+YGEY+N G G+ TS RVTW G++VI +S A FT G F+ G W
Sbjct: 248 GWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSW 307
Query: 387 LNSTGIPFYLNL 398
L +T PF L L
Sbjct: 308 LKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/306 (61%), Positives = 223/306 (72%)
Query: 89 IVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKT 148
+VA+DG+G++ T+ EAV AAP+KS TR+VIY+K G Y ENVEV K LM VGDG+ T
Sbjct: 6 VVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYAT 65
Query: 149 VVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKC 208
+ + +VVDG TTFRSAT+A VG GFI + I ++N+AGP+K QAVALR G+D+S +C
Sbjct: 66 TITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRC 125
Query: 209 SFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITAQG 268
YQDTLY HS RQFYR+ V GTVDFIFGNAAVVFQ C L ARKP Q+N++TAQG
Sbjct: 126 RIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQG 185
Query: 269 REDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGW 328
R DPNQ TG SI C + A+SDL P EF TYLGRPWKEYSRTV M SYLG LI PAGW
Sbjct: 186 RTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGW 245
Query: 329 LEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLN 388
EW+G FAL TL+YGE+ N GPG+ TS RV WPGY VI + A A FT +QG WL
Sbjct: 246 AEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLR 305
Query: 389 STGIPF 394
STG+ +
Sbjct: 306 STGVAY 311
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 121/251 (48%), Gaps = 35/251 (13%)
Query: 84 TKFDLIVAKDGSG--NFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFV 141
T ++ +V+K S F TI +A+ +AP S T FVI IK G Y E + + + L
Sbjct: 2 TTYNAVVSKSSSDGKTFKTIADAIASAPAGS-TPFVILIKNGVYNERLTITRNNLHLKGE 60
Query: 142 GDGIGKTVVKANRSVV--DG--WTTFRSATVAVVGTGFIAKGITVEN------------- 184
+ DG W T S+T+ + F A+ +T+ N
Sbjct: 61 SRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDS 120
Query: 185 -SAGPSKHQAVAL---RSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFG 240
S+ QAVAL +SG D + F S VGYQDTLYV R F+ +C + GTVDFIFG
Sbjct: 121 DSSKIKDTQAVALYVTKSG-DRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFG 179
Query: 241 NAAVVFQICNLYAR-KPNANQKNI---ITAQGREDPNQNTGISILNCKVAAASDLIPYQT 296
+ +F C+L +R + + N+ +TA + NQ G+ I N +V SD +P
Sbjct: 180 DGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPA-- 236
Query: 297 EFKTY-LGRPW 306
K+Y LGRPW
Sbjct: 237 --KSYGLGRPW 245
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 121/251 (48%), Gaps = 35/251 (13%)
Query: 84 TKFDLIVAKDGSG--NFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFV 141
T ++ +V+K S F TI +A+ +AP S T FVI IK G Y E + + + L
Sbjct: 2 TTYNAVVSKSSSDGKTFKTIADAIASAPAGS-TPFVILIKNGVYNERLTITRNNLHLKGE 60
Query: 142 GDGIGKTVVKANRSVV--DG--WTTFRSATVAVVGTGFIAKGITVEN------------- 184
+ DG W T S+T+ + F A+ +T+ N
Sbjct: 61 SRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDS 120
Query: 185 -SAGPSKHQAVAL---RSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFG 240
S+ QAVAL +SG D + F S VGYQDTLYV R F+ +C + GTVDFIFG
Sbjct: 121 DSSKIKDTQAVALYVTKSG-DRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFG 179
Query: 241 NAAVVFQICNLYAR-KPNANQKNI---ITAQGREDPNQNTGISILNCKVAAASDLIPYQT 296
+ +F C+L +R + + N+ +TA + NQ G+ I N +V SD +P
Sbjct: 180 DGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPA-- 236
Query: 297 EFKTY-LGRPW 306
K+Y LGRPW
Sbjct: 237 --KSYGLGRPW 245
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 120/251 (47%), Gaps = 35/251 (13%)
Query: 84 TKFDLIVAKDGSG--NFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFV 141
T ++ +V+K S F TI +A+ +AP S T FVI IK G Y E + + + L
Sbjct: 2 TTYNAVVSKSSSDGKTFKTIADAIASAPAGS-TPFVILIKNGVYNERLTITRNNLHLKGE 60
Query: 142 GDGIGKTVVKANRSVV--DG--WTTFRSATVAVVGTGFIAKGITVEN------------- 184
+ DG W T S+T+ + F A+ +T+ N
Sbjct: 61 SRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDS 120
Query: 185 -SAGPSKHQAVAL---RSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFG 240
S+ QAVAL +SG D + F S VGYQ TLYV R F+ +C + GTVDFIFG
Sbjct: 121 DSSKIKDTQAVALYVTKSG-DRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFG 179
Query: 241 NAAVVFQICNLYAR-KPNANQKNI---ITAQGREDPNQNTGISILNCKVAAASDLIPYQT 296
+ +F C+L +R + + N+ +TA + NQ G+ I N +V SD +P
Sbjct: 180 DGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPA-- 236
Query: 297 EFKTY-LGRPW 306
K+Y LGRPW
Sbjct: 237 --KSYGLGRPW 245
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 28/211 (13%)
Query: 68 WLSLNDRKLLQKSVNLTKFDLIVAKDGSGN-FTTITEAVEAAPNKSNTRFVIYIKAGAYF 126
WL L +L +VN +++ +V+ G+ F++I A+++AP K +T F+I++K G Y
Sbjct: 14 WLGLISFAVL-GTVNAAQYNAVVSTTPQGDEFSSINAALKSAP-KDDTPFIIFLKNGVYT 71
Query: 127 ENVEVDKKKTMLMFVGDGIGKTVVKANRSVV------DGWTTFRSATVAVVGTGFIAKGI 180
E +EV + L G+ TV+ AN + + W T S+TV V F A+ +
Sbjct: 72 ERLEVARSHVTLK--GENRDGTVIGANTAAGMLNPQGEKWGTSGSSTVLVNAPNFTAENL 129
Query: 181 TVENS-----------AGPSK---HQAVAL--RSGSDLSAFYKCSFVGYQDTLYVHS-LR 223
T+ N P+K QAVAL SD + F GYQDTLY + R
Sbjct: 130 TIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGSR 189
Query: 224 QFYRECDVYGTVDFIFGNAAVVFQICNLYAR 254
++ +C++ G VDFIFG+ VF CN+ AR
Sbjct: 190 SYFSDCEISGHVDFIFGSGITVFDNCNIVAR 220
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc
Length = 422
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 76/215 (35%), Gaps = 55/215 (25%)
Query: 87 DLIVAKDGSG--NFTTITEAVEAAP-NKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGD 143
D +V G+ TTI AV+AA ++N R I + G Y V V + G
Sbjct: 76 DFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGT 135
Query: 144 GIGKTVVKANRSVVDG----------------------WTTF------RSATVAVV---- 171
G VK S+ G W + RS ++ V+
Sbjct: 136 GEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAV 195
Query: 172 ----GTGFIAKGITVENSAGPS----KHQAVALRSGSDLSAFYKCSFVGYQDTLYV---- 219
G + +T+EN+ G S H AVALR+ D + +G Q+T +V
Sbjct: 196 FWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSG 255
Query: 220 --------HSLRQFYRECDVYGTVDFIFGNAAVVF 246
R + G VD + G AVVF
Sbjct: 256 VQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVF 290
>pdb|3H76|A Chain A, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
pdb|3H76|B Chain B, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
Length = 359
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 132 DKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFR 164
D+ + + + +GDG G VV A S+ DG R
Sbjct: 173 DRGRNLSILLGDGAGAVVVSAGESLEDGLLDLR 205
>pdb|3H78|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
pdb|3H78|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
Length = 359
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 132 DKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFR 164
D+ + + + +GDG G VV A S+ DG R
Sbjct: 173 DRGRNLSILLGDGAGAVVVSAGESLEDGLLDLR 205
>pdb|3H77|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
pdb|3H77|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
Length = 359
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 132 DKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFR 164
D+ + + + +GDG G VV A S+ DG R
Sbjct: 173 DRGRNLSILLGDGAGAVVVSAGESLEDGLLDLR 205
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 135 KTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAV 194
K + +F GDGIG +V A R V+D ++A + + T + G ++ S P ++
Sbjct: 2 KKIAIFAGDGIGPEIVAAARQVLD--AVDQAAHLGLRCTEGLVGGAALDASDDPLPAASL 59
Query: 195 ALRSGSD 201
L +D
Sbjct: 60 QLAMAAD 66
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 123 GAYFENVEVDKKKTMLMFVGDG 144
GA F E+D KK +++F+GDG
Sbjct: 424 GAAFAAEEIDPKKRVILFIGDG 445
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 308 EYSRTVFMLSYL--GDLIAPAGWLEWNGTFALSTLFYGEYKN 347
E+++ V++ L G L AGWL G A + L YGEY N
Sbjct: 270 EFNKNVYVPDVLAIGTLYKQAGWLYGGGLAATNVLDYGEYPN 311
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 123 GAYFENVEVDKKKTMLMFVGDG 144
GA F E+D KK +++F+GDG
Sbjct: 424 GAAFAAEEIDPKKRVILFIGDG 445
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 123 GAYFENVEVDKKKTMLMFVGDG 144
GA F E+D KK +++F+GDG
Sbjct: 424 GAAFAAEEIDPKKRVILFIGDG 445
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 123 GAYFENVEVDKKKTMLMFVGDG 144
GA F E+D KK +++F+GDG
Sbjct: 424 GAAFAAEEIDPKKRVILFIGDG 445
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 123 GAYFENVEVDKKKTMLMFVGDG 144
GA F E+D KK +++F+GDG
Sbjct: 424 GAAFAAEEIDPKKRVILFIGDG 445
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 123 GAYFENVEVDKKKTMLMFVGDG 144
GA F E+D KK +++F+GDG
Sbjct: 424 GAAFAAEEIDPKKRVILFIGDG 445
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 123 GAYFENVEVDKKKTMLMFVGDG 144
GA F E+D KK +++F+GDG
Sbjct: 423 GAAFAAEEIDPKKRVILFIGDG 444
>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBF|B Chain B, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBG|A Chain A, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
pdb|2VBG|B Chain B, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
Length = 570
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 24/124 (19%)
Query: 31 RHVSNSLVMLKKIP--GDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKF-D 87
R V +SL LK I G + +YE F P+ L+ +L Q +LT+ +
Sbjct: 344 RAVVSSLSELKGIEYEGQYIDKQYEEF---------IPSSAPLSQDRLWQAVESLTQSNE 394
Query: 88 LIVAKDGSGNFTTITEAVEAAPNKSNTRFV-------IYIKAGAYFENVEVDKKKTMLMF 140
IVA+ G+ F T + KSN+RF+ I A + DK+ L+F
Sbjct: 395 TIVAEQGTSFFGASTIFL-----KSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLF 449
Query: 141 VGDG 144
+GDG
Sbjct: 450 IGDG 453
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,125,435
Number of Sequences: 62578
Number of extensions: 505584
Number of successful extensions: 1142
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 28
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)