BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015795
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 140/257 (54%), Gaps = 5/257 (1%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
+I+ LPNG+ IAS + SP + I +++ GS YE+ + GT HLL + +T+ S R
Sbjct: 27 EITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFR 86
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
I R +EA+GG++ ++RE+M Y + L+ +V ++E L++ P F WEV + ++
Sbjct: 87 ITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQL 146
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRM 259
K + + +PQ +LE +H+A Y ALANPL P+ I ++ S L FV N+T RM
Sbjct: 147 KVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARM 206
Query: 260 VLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFEL 319
L GV+H L VAE L ++ S K+ Y GG+ R Q +G L H + E
Sbjct: 207 ALVGIGVKHSDLKQVAEQFL-NIRSGAGTSSAKATYWGGEIREQ--NGHSLVHAAVVTE- 262
Query: 320 PGGWHKDKDAMTLTVLQ 336
G +A +VLQ
Sbjct: 263 -GAAVGSAEANAFSVLQ 278
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 145/266 (54%), Gaps = 12/266 (4%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NGV++ASE S P ++ +++ GS YES + G + LE +AF+ T+NR
Sbjct: 13 ETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQ 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A +SRE Y AL VP+ VELL D V+N D ++ ++
Sbjct: 73 NALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P I +L+ L E+++ +YT
Sbjct: 133 VIVRELQENDTSMREVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTA 192
Query: 257 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREE----PKSVYTGGDYRCQADSGDQLT 311
PRMVLAA+ GVEH QL+ +A+ +P + + K +TG R + D G L
Sbjct: 193 PRMVLAAAGGVEHQQLLELAQKHFGGVPFTYDDDAVPTLSKCRFTGSQIRHRED-GLPLA 251
Query: 312 HFVLAFELPGGWHKDKDAMTLTVLQV 337
H +A E PG H D L LQV
Sbjct: 252 HVAIAVEGPGWAHPD-----LVALQV 272
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 150/271 (55%), Gaps = 10/271 (3%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P +I+ LPNG+ IAS + SP ++I +++ GS YE+ + GT+HLL + +T+
Sbjct: 4 PQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGA 63
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 195
S +I R +EA+GG + ++RE M Y+ + L+ V ++E L++ P F WEV +
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADL 123
Query: 196 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 255
++K + + NPQ+ ++E +H+A Y ALA+ L P+ I ++ S L +FV ++T
Sbjct: 124 QPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFT 183
Query: 256 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVL 315
RM L GV H L +VAE LL+ + K+ Y GG+ R Q +GD L H +
Sbjct: 184 SARMALVGLGVSHPVLKNVAEQLLNIRGGL-GLSGAKAKYRGGEIREQ--NGDSLVHAAI 240
Query: 316 AFELP--GGWHKDKDAMTLTVLQ-VMISNPH 343
E GG +A +VLQ V+ +NPH
Sbjct: 241 VAESAAIGG----AEANAFSVLQHVLGANPH 267
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 150/271 (55%), Gaps = 10/271 (3%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P +I+ LPNG+ IAS + SP ++I +++ GS YE+ + GT+HLL + +T+
Sbjct: 4 PQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGA 63
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 195
S +I R +EA+GG + ++RE M Y+ + L+ V ++E L++ P F WEV +
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADL 123
Query: 196 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 255
++K + + NPQ+ ++E +H+A Y ALA+ L P+ I ++ S L +FV ++T
Sbjct: 124 QPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFT 183
Query: 256 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVL 315
RM L GV H L +VAE LL+ + K+ Y GG+ R Q +GD L H +
Sbjct: 184 SARMALVGLGVSHPVLKNVAEQLLNIRGGL-GLSGAKAKYRGGEIREQ--NGDSLVHAAI 240
Query: 316 AFELP--GGWHKDKDAMTLTVLQ-VMISNPH 343
E GG +A +VLQ V+ +NPH
Sbjct: 241 VAESAAIGG----AEANAFSVLQHVLGANPH 267
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 143/261 (54%), Gaps = 7/261 (2%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A ++RE Y AL +P+ VELL D V+N D ++ ++
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 133 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 192
Query: 257 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLT 311
PRMVLAA+ G+EH QL+ +A+ S L + + ++ +TG C + G L
Sbjct: 193 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 251
Query: 312 HFVLAFELPGGWHKDKDAMTL 332
H +A E PG H D A+ +
Sbjct: 252 HVAIAVEGPGWAHPDNVALQV 272
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 143/261 (54%), Gaps = 7/261 (2%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A ++RE Y AL +P+ VELL D V+N D ++ ++
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 133 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 192
Query: 257 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLT 311
PRMVLAA+ G+EH QL+ +A+ S L + + ++ +TG C + G L
Sbjct: 193 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 251
Query: 312 HFVLAFELPGGWHKDKDAMTL 332
H +A E PG H D A+ +
Sbjct: 252 HVAIAVEGPGWAHPDNVALQV 272
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 143/261 (54%), Gaps = 7/261 (2%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 47 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 106
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A ++RE Y AL +P+ VELL D V+N D ++ ++
Sbjct: 107 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 166
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 167 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 226
Query: 257 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLT 311
PRMVLAA+ G+EH QL+ +A+ S L + + ++ +TG C + G L
Sbjct: 227 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 285
Query: 312 HFVLAFELPGGWHKDKDAMTL 332
H +A E PG H D A+ +
Sbjct: 286 HVAIAVEGPGWAHPDNVALQV 306
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 143/269 (53%), Gaps = 6/269 (2%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 5 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA 64
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 195
S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P F WEV
Sbjct: 65 SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAAL 124
Query: 196 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 255
+++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++T
Sbjct: 125 QPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFT 184
Query: 256 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVL 315
RM L GV H L VAE L+ + K+ Y GG+ R Q +GD L H L
Sbjct: 185 SARMALIGLGVSHPVLKQVAEQFLNIRGGL-GLSGAKAKYHGGEIREQ--NGDSLVHAAL 241
Query: 316 AFELPGGWHKDKDAMTLTVLQ-VMISNPH 343
E + +A +VLQ V+ + PH
Sbjct: 242 VAESAAIGSAEANA--FSVLQHVLGAGPH 268
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 143/269 (53%), Gaps = 6/269 (2%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 35 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA 94
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 195
S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P F WEV
Sbjct: 95 SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAAL 154
Query: 196 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 255
+++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++T
Sbjct: 155 QPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFT 214
Query: 256 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVL 315
RM L GV H L VAE L+ + K+ Y GG+ R Q +GD L H L
Sbjct: 215 SARMALIGLGVSHPVLKQVAEQFLNIRGGLG-LSGAKAKYHGGEIREQ--NGDSLVHAAL 271
Query: 316 AFELPGGWHKDKDAMTLTVLQ-VMISNPH 343
E + +A +VLQ V+ + PH
Sbjct: 272 VAESAAIGSAEANA--FSVLQHVLGAGPH 298
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 143/269 (53%), Gaps = 6/269 (2%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 21 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA 80
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 195
S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P F WEV
Sbjct: 81 SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAAL 140
Query: 196 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 255
+++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++T
Sbjct: 141 QPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFT 200
Query: 256 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVL 315
RM L GV H L VAE L+ + K+ Y GG+ R Q +GD L H L
Sbjct: 201 SARMALIGLGVSHPVLKQVAEQFLNIRGGLG-LSGAKAKYHGGEIREQ--NGDSLVHAAL 257
Query: 316 AFELPGGWHKDKDAMTLTVLQ-VMISNPH 343
E + +A +VLQ V+ + PH
Sbjct: 258 VAESAAIGSAEANA--FSVLQHVLGAGPH 284
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 140/268 (52%), Gaps = 9/268 (3%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T ++TL NG+++ASE S P ++ +++G GS YE+ + G + +E +AF+ T+ R
Sbjct: 13 ETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPC 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+EVE++G + SREQ + AL +P++VELL D V+N + ++ ++
Sbjct: 73 AAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERG 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E+ N+ ++ + +H+ + G ALA + I L L ++ ++
Sbjct: 133 VILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRADLASYIDTHFKA 192
Query: 257 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREE----PKSVYTGGDYRCQADSGDQLT 311
PRMVLAA+ G+ H +LV A S + + + P+ +TG + R + D +
Sbjct: 193 PRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPILPRCRFTGSEIRAR-DDALPVA 251
Query: 312 HFVLAFELPGGWHKDKDAMTLTVLQVMI 339
H LA E P GW D D + L V +I
Sbjct: 252 HVALAVEGP-GW-ADPDNVVLHVANAII 277
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 2/222 (0%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
K+S+L NG+K+A+ + +++ LY+ GS +E G TH+L+R+AF+ST +
Sbjct: 7 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA 66
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
+ +E +GGN Q ++SRE + Y V +M++L+ + VR P + E+ EQ
Sbjct: 67 MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSA 126
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPR 258
+ EI EV P+ +L E +H+A YSG L +PL+ P I ++ L ++ + YT
Sbjct: 127 EYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN 186
Query: 259 MVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGD 299
V A GV H++ + + L D S HP K + YTGG+
Sbjct: 187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGE 228
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 4/211 (1%)
Query: 76 PGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
PG T+ S LPNG+ IA+E + A++ ++V GS E+ + GT H LE +AF+ T+N
Sbjct: 5 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQN 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
R I E+E IG ++ A SRE Y +L+ +P+ V++L D + V + +
Sbjct: 64 RPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIER 123
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 253
+ + E EV ++ + +H Y L +L P I + T L++++ +N
Sbjct: 124 ERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 254 YTGPRMVLAASG-VEHDQLVSVAEPLLSDLP 283
Y G RMVLA +G V+H++LV A+ +P
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVP 214
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 4/211 (1%)
Query: 76 PGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
PG T+ S LPNG+ IA+E + A++ ++V GS E+ + GT H L+ +AF+ T+N
Sbjct: 5 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQN 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
R I E+E IG ++ A SRE Y +L+ +P+ V++L D + V + +
Sbjct: 64 RPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIER 123
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 253
+ + E EV ++ + +H Y L +L P I + T L++++ +N
Sbjct: 124 ERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 254 YTGPRMVLAASG-VEHDQLVSVAEPLLSDLP 283
Y G RMVLA +G V+H++LV A+ +P
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVP 214
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 119/256 (46%), Gaps = 7/256 (2%)
Query: 83 TLPNGVKIASET-SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIV 141
TL NGV+I +E S SI ++VG GS YES G +H LE M F+ T RS I
Sbjct: 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIA 65
Query: 142 REVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
++IGG V A S+E Y L + + ++ L D + F E+ ++ V
Sbjct: 66 EFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFE 125
Query: 202 EISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMV 260
EI V + P ++ + + SA Y +L P+L +N N +L ++ YTG +V
Sbjct: 126 EIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVV 185
Query: 261 LAASGVEHDQLVSVAEPLLSDL-PSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFEL 319
++ +G HD+L+ + S + P+ + + K ++ R + H L +
Sbjct: 186 ISVAGNVHDELIDKIKETFSQVKPTTYNYQGEKPMFLPN--RIVRKKETEQAHLCLGY-- 241
Query: 320 PGGWHKDKDAMTLTVL 335
PG DKD L +L
Sbjct: 242 PGLPIGDKDVYALVLL 257
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 9/208 (4%)
Query: 90 IASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG 149
+++ + + ++++++ V GS Y + G HLL R F++T RS L++VRE E +GG
Sbjct: 3 VSARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELLGG 60
Query: 150 NVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ-LTKVKSEISEVSN 208
+++ RE + LK +P V L D + F E+ E L + + +
Sbjct: 61 TFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQ 120
Query: 209 NPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267
P + +++ + L NPLL + R++ +++F + YT + ++ VE
Sbjct: 121 CPVKSAEDQLYAITFRKGLGNPLLY--DGVERVSLQDIKDFADKVYTKENLEVSGENVVE 178
Query: 268 HDQLVSVAEPLLSDLP---SIHPREEPK 292
D V E LLS LP S+ + EPK
Sbjct: 179 ADLKRFVDESLLSTLPAGKSLVSKSEPK 206
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 16/272 (5%)
Query: 82 STLPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 140
+TLPNG+K+ E +P ++ GS+ E+ + G H LE M F+ T++
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEF 69
Query: 141 VREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 200
+ V A+GG A +R+ Y + + +++ L D + N V D +++ +
Sbjct: 70 SKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIA 129
Query: 201 SEIS-EVSNNPQSLLLEAIHSAGYSGALANPLLAP----ESAINRLNSTLLEEFVAENYT 255
E + P+S EA+ +A Y +A+P P + I + + + ++ Y
Sbjct: 130 EERRWRTDDKPRSKAYEALMAASY---VAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWY- 185
Query: 256 GPR--MVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYRCQADSGDQLT 311
GP V+ VEH+ + +AE L + R++ G R + +L
Sbjct: 186 GPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELP 245
Query: 312 HFVLAFELPG--GWHKDKDAMTLTVLQVMISN 341
+ LA+ +P K +DA L +L ++
Sbjct: 246 YLALAWHVPAIVDLDKSRDAYALEILAAVLDG 277
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 16/272 (5%)
Query: 82 STLPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 140
+TLPNG+K+ E +P ++ GS+ E+ + G H LE M F+ T++
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEF 69
Query: 141 VREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 200
+ V A+GG A +R+ Y + + +++ L D + N V D +++ +
Sbjct: 70 SKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIA 129
Query: 201 SEIS-EVSNNPQSLLLEAIHSAGYSGALANPLLAP----ESAINRLNSTLLEEFVAENYT 255
E + P+S EA+ +A Y +A+P P + I + + + ++ Y
Sbjct: 130 EERRWRTDDKPRSKAYEALMAASY---VAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWY- 185
Query: 256 GPR--MVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYRCQADSGDQLT 311
GP V+ VEH+ + +AE L + R++ G R + +L
Sbjct: 186 GPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELP 245
Query: 312 HFVLAFELPG--GWHKDKDAMTLTVLQVMISN 341
+ LA+ +P K +DA L +L ++
Sbjct: 246 YLALAWHVPAIVDLDKSRDAYALEILAAVLDG 277
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 16/235 (6%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
+++ L NG+ +A+E + + AS+ + G G+ E+P + G ++L + + F S N +
Sbjct: 2 EVTQLSNGIVVATEHNPAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA--V 58
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDC-VRNPVFLDWEVNEQLTK 198
+E A+ N+ SR+ Y +L + ++ L ++ L N + TK
Sbjct: 59 AAKEGLALSSNI----SRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK 114
Query: 199 VKSEISEV----SNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 253
KS + +V N+ + +LE +HS + L+ P ++ L LE F +
Sbjct: 115 -KSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNH 173
Query: 254 YTGPRMVLAASG-VEHDQLV-SVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADS 306
+ V+ +G ++H+ LV S+ LS P + K+ + G + R + D+
Sbjct: 174 FLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDT 228
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 80 KISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL 138
+++ L NG+ +A+E + S AS+ + G G+ E+P + G ++L + + F S N +
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA-- 58
Query: 139 RIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDC-VRNPVFLDWEVNEQLT 197
+E A+ N+ SR+ Y +L + ++ L ++ L N + T
Sbjct: 59 VAAKEGLALSSNI----SRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEAT 114
Query: 198 KVKSEISEV----SNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAE 252
K KS + +V N+ + +LE +HS + L+ P ++ L LE F
Sbjct: 115 K-KSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANN 173
Query: 253 NYTGPRMVLAASG-VEHDQLV-SVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADS 306
++ V+ +G ++H+ LV S+ LS P + K+ + G + R + D+
Sbjct: 174 HFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDT 229
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H LE M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLEHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 69 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 128
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 129 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 188
Query: 202 E 202
E
Sbjct: 189 E 189
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 27 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 86
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 87 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 146
Query: 202 E 202
E
Sbjct: 147 E 147
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|3V6O|A Chain A, Leptin Receptor-Antibody Complex
pdb|3V6O|B Chain B, Leptin Receptor-Antibody Complex
Length = 206
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 280 SDLPSIHPREEPKSVYTGGD--YRC 302
SD+PSIHP EPK Y D Y C
Sbjct: 47 SDIPSIHPISEPKDCYLQSDGFYEC 71
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 122 HLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELL 178
++ E F+ R +H+ + +G N++ S R LK Y+ E V+L
Sbjct: 56 YIFENFVFQKNRKINHIIKTSKYSTVGFNIENSYDRLMKTIKEHKLKNYIKESVKLF 112
>pdb|1JLI|A Chain A, Human Interleukin 3 (Il-3) Mutant With Truncation At Both
N- And C-Termini And 14 Residue Changes, Nmr, Minimized
Average Structure
Length = 112
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 229 NPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDL------ 282
NPLL P N LNS ++ + N P ++ V+H + S E +L +L
Sbjct: 19 NPLLDP----NNLNSEDMDILMERNLRTPNLLAFVRAVKHLENASAIESILKNLLPCLPL 74
Query: 283 ----PSIHP 287
P+ HP
Sbjct: 75 ATAAPTRHP 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,566,973
Number of Sequences: 62578
Number of extensions: 404419
Number of successful extensions: 922
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 31
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)