Query 015795
Match_columns 400
No_of_seqs 306 out of 1828
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2067 Mitochondrial processi 100.0 9E-50 1.9E-54 360.4 22.2 302 75-390 21-330 (472)
2 KOG0960 Mitochondrial processi 100.0 1E-44 2.2E-49 327.3 25.0 305 77-399 32-342 (467)
3 COG0612 PqqL Predicted Zn-depe 100.0 1.6E-44 3.4E-49 356.1 28.8 291 77-392 15-314 (438)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 7.2E-43 1.6E-47 352.2 35.3 279 81-388 2-289 (696)
5 PRK15101 protease3; Provisiona 100.0 8.8E-37 1.9E-41 328.3 31.3 287 76-389 41-341 (961)
6 PTZ00432 falcilysin; Provision 100.0 3E-30 6.4E-35 276.2 27.3 285 77-389 90-438 (1119)
7 KOG2583 Ubiquinol cytochrome c 100.0 1.3E-27 2.7E-32 217.5 26.9 259 79-343 23-282 (429)
8 COG1025 Ptr Secreted/periplasm 100.0 3.1E-26 6.6E-31 230.3 27.9 291 74-391 19-323 (937)
9 KOG0959 N-arginine dibasic con 100.0 5.1E-26 1.1E-30 232.5 28.5 286 77-389 26-326 (974)
10 PRK15101 protease3; Provisiona 99.9 6.4E-26 1.4E-30 244.3 25.7 301 56-393 497-810 (961)
11 PF00675 Peptidase_M16: Insuli 99.9 2.6E-23 5.6E-28 174.5 16.5 146 89-234 1-148 (149)
12 COG1026 Predicted Zn-dependent 99.8 3.9E-17 8.5E-22 165.8 21.8 280 78-386 21-329 (978)
13 KOG2019 Metalloendoprotease HM 99.7 3.8E-15 8.3E-20 144.3 22.6 288 82-400 564-885 (998)
14 COG1026 Predicted Zn-dependent 99.7 4.8E-15 1E-19 150.8 23.1 298 71-400 520-855 (978)
15 PTZ00432 falcilysin; Provision 99.7 1.2E-14 2.5E-19 156.8 23.2 284 84-400 665-999 (1119)
16 PF05193 Peptidase_M16_C: Pept 99.7 7.9E-16 1.7E-20 132.9 11.7 127 240-392 1-137 (184)
17 KOG0961 Predicted Zn2+-depende 99.6 7.8E-15 1.7E-19 142.0 16.5 252 86-342 28-307 (1022)
18 KOG2019 Metalloendoprotease HM 99.6 5.9E-14 1.3E-18 136.2 16.0 283 80-391 55-370 (998)
19 COG1025 Ptr Secreted/periplasm 99.6 6.2E-13 1.4E-17 135.1 23.0 308 55-399 475-796 (937)
20 KOG0959 N-arginine dibasic con 99.3 5.3E-10 1.2E-14 115.9 25.0 298 55-388 482-801 (974)
21 PF08367 M16C_assoc: Peptidase 98.8 1.1E-07 2.3E-12 86.5 13.7 119 71-191 63-193 (248)
22 PF03410 Peptidase_M44: Protei 97.7 0.0017 3.6E-08 62.1 15.0 183 82-287 2-194 (590)
23 KOG0961 Predicted Zn2+-depende 97.6 0.0014 2.9E-08 65.4 13.1 269 93-392 556-868 (1022)
24 PHA03081 putative metalloprote 97.5 0.0032 7E-08 60.3 14.2 184 82-287 2-194 (595)
25 KOG0960 Mitochondrial processi 97.0 0.017 3.8E-07 54.2 12.7 176 87-267 258-450 (467)
26 KOG2067 Mitochondrial processi 96.2 0.1 2.2E-06 49.3 12.2 162 99-265 264-442 (472)
27 COG0612 PqqL Predicted Zn-depe 96.0 0.32 7E-06 48.1 16.0 127 139-267 291-432 (438)
28 TIGR02110 PQQ_syn_pqqF coenzym 93.5 2 4.3E-05 45.0 14.3 180 140-388 480-664 (696)
29 PF05193 Peptidase_M16_C: Pept 88.3 1.3 2.9E-05 37.1 6.2 108 87-199 67-184 (184)
30 PF09851 SHOCT: Short C-termin 45.5 60 0.0013 18.8 4.1 28 173-200 3-30 (31)
31 PF01729 QRPTase_C: Quinolinat 29.0 58 0.0013 27.6 3.0 42 236-277 104-147 (169)
32 PF09186 DUF1949: Domain of un 28.8 1.7E+02 0.0036 18.9 6.6 46 137-182 8-53 (56)
33 cd04922 ACT_AKi-HSDH-ThrA_2 AC 27.4 1.8E+02 0.0038 19.4 4.9 46 138-183 19-65 (66)
34 PRK06063 DNA polymerase III su 26.5 1.8E+02 0.0039 27.4 6.1 67 128-199 239-308 (313)
35 PRK05986 cob(I)alamin adenolsy 26.5 94 0.002 26.9 3.9 35 239-275 131-166 (191)
36 cd04916 ACT_AKiii-YclM-BS_2 AC 26.4 2E+02 0.0043 19.1 5.2 46 139-184 20-66 (66)
37 cd04936 ACT_AKii-LysC-BS-like_ 24.1 2.1E+02 0.0046 18.6 4.8 44 138-182 18-61 (63)
38 cd04923 ACT_AK-LysC-DapG-like_ 22.9 2.3E+02 0.0049 18.5 4.8 44 138-182 18-61 (63)
39 TIGR00708 cobA cob(I)alamin ad 22.4 1.3E+02 0.0028 25.6 3.9 34 240-275 114-148 (173)
40 cd04924 ACT_AK-Arch_2 ACT doma 22.1 2.5E+02 0.0053 18.6 4.8 44 139-182 20-64 (66)
41 COG3372 Predicted nuclease of 21.2 7.6E+02 0.016 24.0 9.0 24 253-277 159-182 (396)
42 PRK07414 cob(I)yrinic acid a,c 21.2 1.4E+02 0.003 25.5 3.8 34 240-275 132-166 (178)
43 cd04919 ACT_AK-Hom3_2 ACT doma 21.1 2.6E+02 0.0057 18.6 5.0 46 138-183 19-65 (66)
44 PF13840 ACT_7: ACT domain ; P 20.1 2.3E+02 0.005 19.3 4.2 39 140-180 27-65 (65)
45 PF02572 CobA_CobO_BtuR: ATP:c 20.1 1.9E+02 0.0041 24.6 4.4 35 239-275 112-147 (172)
No 1
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-50 Score=360.40 Aligned_cols=302 Identities=42% Similarity=0.606 Sum_probs=274.5
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEE
Q 015795 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (400)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (400)
++.+++.++|+||+||++++++++.+++++++++|+++|.+...|++|++++|+|++|.+++..++...||.+||+++|+
T Consensus 21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq 100 (472)
T KOG2067|consen 21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ 100 (472)
T ss_pred ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCC
Q 015795 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~ 233 (400)
+++|.+.|.+++.+++++.++++|+|.+.+|+|++|+++.+|..++-|++....+|+.++.+.+|.++| +++++.|.+|
T Consensus 101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c 180 (472)
T KOG2067|consen 101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC 180 (472)
T ss_pred ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ChHhhcccCHHHHHHHHHhhcCCCCeEEEEEcCCHHHHHHHHHhhcCCCCCCCCC--CCCCCCCCCCceEEecCC-----
Q 015795 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR--EEPKSVYTGGDYRCQADS----- 306 (400)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvGv~~~~l~~lv~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~----- 306 (400)
+++.+++|+.+.|.+|.+++|+|+||+++.|||+|++++++++++|++||....+ ..++.+|+||...+..+.
T Consensus 181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~ 260 (472)
T KOG2067|consen 181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG 260 (472)
T ss_pred ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence 9999999999999999999999999999999999999999999999999985433 346679999976655331
Q ss_pred CCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEe
Q 015795 307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFS 386 (400)
Q Consensus 307 ~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s 386 (400)
..+-+||+++|++++ ++++|.+++.|||.+||||+|. .-...-+.+|- |||.++=.+..|.|++-|
T Consensus 261 g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSF----------SAGGPGKGMyS--rLY~~vLNry~wv~sctA 326 (472)
T KOG2067|consen 261 GPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSF----------SAGGPGKGMYS--RLYLNVLNRYHWVYSCTA 326 (472)
T ss_pred ccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCccc----------CCCCCCcchHH--HHHHHHHhhhHHHHHhhh
Confidence 127899999999998 6999999999999999997653 11222233444 899999999999999888
Q ss_pred eecc
Q 015795 387 FQGL 390 (400)
Q Consensus 387 ~~~~ 390 (400)
++-.
T Consensus 327 fnhs 330 (472)
T KOG2067|consen 327 FNHS 330 (472)
T ss_pred hhcc
Confidence 7644
No 2
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-44 Score=327.35 Aligned_cols=305 Identities=29% Similarity=0.466 Sum_probs=264.8
Q ss_pred CceEEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEec
Q 015795 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (400)
|+++.++|+||++|+.+++..+++++++++++|+++|++.+.|.+||++||+|+||++++...+..++|.+|+.++++++
T Consensus 32 P~t~vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytS 111 (467)
T KOG0960|consen 32 PETEVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTS 111 (467)
T ss_pred CcceEEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccccc
Confidence 67899999999999999996679999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 015795 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (400)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~ 235 (400)
++++.|..+++++++++++++|.|++++..+.+.+++++|..++.|.++...+-+...++.+|..+| ++|++++.+|+.
T Consensus 112 ReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~ 191 (467)
T KOG0960|consen 112 REQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPS 191 (467)
T ss_pred ccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCC----CCCCCCCCCCCceEEecCCCCCc
Q 015795 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP----REEPKSVYTGGDYRCQADSGDQL 310 (400)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~q 310 (400)
++|++|+.+||++|.+.+|.++||+++.+| |+|+++++++++|||+++.... +..+++.|+|.+++...+ +.|.
T Consensus 192 enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd-~lP~ 270 (467)
T KOG0960|consen 192 ENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDD-DLPL 270 (467)
T ss_pred hhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCC-CCch
Confidence 999999999999999999999999999999 9999999999999999764322 223456788999888754 3499
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEeeecc
Q 015795 311 THFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGL 390 (400)
Q Consensus 311 s~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~~~ 390 (400)
+|++++.++++ +.++|++++.|.++++|.-... .-...|... +|-+.+-+. .++-++-++...
T Consensus 271 a~~AiAVEG~~--w~~pD~~~l~van~iiG~wdr~-------~g~g~~~~s-------~La~~~~~~-~l~~sfqsFnt~ 333 (467)
T KOG0960|consen 271 AHIAIAVEGVS--WAHPDYFALMVANTIIGNWDRT-------EGGGRNLSS-------RLAQKIQQD-QLCHSFQSFNTS 333 (467)
T ss_pred hheeeeEecCC--cCCccHHHHHHHHHHhhhhhcc-------cCCccCCcc-------HHHHHHHHH-HHHHHHhhhhcc
Confidence 99999999997 5999999999999999851110 011111121 788888775 555555554444
Q ss_pred ceeeeeccC
Q 015795 391 HLYFSFHGF 399 (400)
Q Consensus 391 ~~~~~~~~~ 399 (400)
..+...||.
T Consensus 334 YkDTGLwG~ 342 (467)
T KOG0960|consen 334 YKDTGLWGI 342 (467)
T ss_pred cccccceeE
Confidence 443444443
No 3
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=1.6e-44 Score=356.10 Aligned_cols=291 Identities=25% Similarity=0.389 Sum_probs=258.9
Q ss_pred CceEEEEcCCCcEEEEEeCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEe
Q 015795 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (400)
++++..+|+||+++++.+.+ .+.+++++++++|++.|++...|++|+++||+|+||.+++..++.+.++..|+..++++
T Consensus 15 ~~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ccceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 45899999999999988877 58999999999999999999999999999999999999888899999999999999999
Q ss_pred ccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCC
Q 015795 156 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~ 234 (400)
+.+.+.|.+++++++++.+++++.+++.+|.|++++|+++|..++++++...++|...+.+.++..+| +|||+++..|+
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~ 174 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGT 174 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCC-CCCCCCCCC-CCCc-eEEec--CCCC
Q 015795 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH-PREEPKSVY-TGGD-YRCQA--DSGD 308 (400)
Q Consensus 235 ~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~-~~~~~~~~~-~~~~-~~~~~--~~~~ 308 (400)
+++|++++.++|++||+++|+|+||+|+||| ++++++.++++++|++|+... +...+..+. .+.. ..+.. ....
T Consensus 175 ~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T COG0612 175 EESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDL 254 (438)
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCCCccccCCCceEEecCCCCchh
Confidence 9999999999999999999999999999999 999999999999999999722 222222222 2222 22221 2333
Q ss_pred CceEEEEEeecCCCCCCCC-chHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEee
Q 015795 309 QLTHFVLAFELPGGWHKDK-DAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSF 387 (400)
Q Consensus 309 ~qs~v~~~~~~~~~~~~~~-d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~ 387 (400)
.++++.++++.+. ...+ +++++.+++.+|||+.+| |||+++||++|++|+++++
T Consensus 255 ~~~~~~~g~~~~~--~~~~~~~~~~~l~~~llgg~~~S-----------------------rLf~~~re~~glay~~~~~ 309 (438)
T COG0612 255 EQAWLALGYPGPD--YDSPDDYAALLLLNGLLGGGFSS-----------------------RLFQELREKRGLAYSVSSF 309 (438)
T ss_pred hhhhhhccccCcC--cCcchhhHHHHHHHHHhCCCcch-----------------------HHHHHHHHhcCceeeeccc
Confidence 7889999999887 4444 789999999999999888 9999999999999999975
Q ss_pred eccce
Q 015795 388 QGLHL 392 (400)
Q Consensus 388 ~~~~~ 392 (400)
.+...
T Consensus 310 ~~~~~ 314 (438)
T COG0612 310 SDFLS 314 (438)
T ss_pred ccccc
Confidence 54433
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=7.2e-43 Score=352.22 Aligned_cols=279 Identities=18% Similarity=0.184 Sum_probs=245.0
Q ss_pred EEEcCCCcEEEEEeCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChH-HHHHHHHHcCCeeEEEeccc
Q 015795 81 ISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL-RIVREVEAIGGNVQASASRE 158 (400)
Q Consensus 81 ~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~-~l~~~l~~~g~~~~~~~~~~ 158 (400)
.++|+||++|++.+.+ .+.+++.+++++|+.+|+++..|++||++||+|+||++++.. +|.+.++.+|+.++++++.+
T Consensus 2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d 81 (696)
T TIGR02110 2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER 81 (696)
T ss_pred eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence 4789999999976655 579999999999999999999999999999999999999985 79999999999999999999
Q ss_pred eEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCChHh
Q 015795 159 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 237 (400)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~ 237 (400)
++.|.+++++++++.+|+++.+++.+|.|++++++++|+.+++|++...++|...+.+.+.+.+| +|||+++.+|+.++
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~es 161 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDS 161 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcccC---HHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCC--CCCCCCCCceEEecCCCCCce
Q 015795 238 INRLN---STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYTGGDYRCQADSGDQLT 311 (400)
Q Consensus 238 l~~it---~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~qs 311 (400)
|+.++ .++|++||+++|.|+||+|+|+| +++++++++++++|+.|+....+.. +.+.+..+...+.. .+.+|.
T Consensus 162 L~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~q~ 240 (696)
T TIGR02110 162 LALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPPAPLLRFDRLTLAG-GSEPRL 240 (696)
T ss_pred HhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCceeEEEe-cCcceE
Confidence 99876 99999999999999999999999 9999999999999999986543322 12222233233322 222677
Q ss_pred EEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEeee
Q 015795 312 HFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQ 388 (400)
Q Consensus 312 ~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~ 388 (400)
++.++++.+. ..++ ..+.+++.+||++++| +|+.+||| +|++|+++++.
T Consensus 241 ~l~~~~p~~~--~~d~--~al~lL~~iLg~g~sS-----------------------rL~~~LRe-~GLaysV~s~~ 289 (696)
T TIGR02110 241 WLLFALAGLP--ATAR--DNVTLLCEFLQDEAPG-----------------------GLLAQLRE-RGLAESVAATW 289 (696)
T ss_pred EEEEeecCCC--CCCh--HHHHHHHHHhCCCcch-----------------------HHHHHHHH-CCCEEEEEEec
Confidence 7777776654 3443 4589999999999888 99999997 89999999965
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=8.8e-37 Score=328.30 Aligned_cols=287 Identities=14% Similarity=0.138 Sum_probs=246.7
Q ss_pred CCceEEEEcCCCcEEEEEeC-CCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCC-hHHHHHHHHHcCCeeEE
Q 015795 76 PGKTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQA 153 (400)
Q Consensus 76 ~~~~~~~~L~NG~~v~~~~~-~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~~ 153 (400)
...++..+|+||++|++.+. ..+.+++.+.+++|+.+|+++..|++|+++||+|.||++++ ..++.+.++.+||.+++
T Consensus 41 ~~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA 120 (961)
T PRK15101 41 PRQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNA 120 (961)
T ss_pred ccceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccc
Confidence 45788999999999996554 55799999999999999999999999999999999999996 67999999999999999
Q ss_pred EeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCC
Q 015795 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLL 232 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~ 232 (400)
+++.+++.|.+++++++++.+|+++++++.+|.|++++++++|..+.+|++...++|...+.+.+.+.+| +|||+++..
T Consensus 121 ~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~ 200 (961)
T PRK15101 121 STASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSG 200 (961)
T ss_pred eECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999899999999999999999 999999999
Q ss_pred CChHhhccc----CHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCC--CCCCCC---CCceEE
Q 015795 233 APESAINRL----NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYT---GGDYRC 302 (400)
Q Consensus 233 ~~~~~l~~i----t~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~--~~~~~~---~~~~~~ 302 (400)
|+.++|..+ +.++|++||+++|.|++|+++|+| ++++++.++++++|+.||....+.+ +.+.+. .+.. +
T Consensus 201 G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 279 (961)
T PRK15101 201 GNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGII-I 279 (961)
T ss_pred CCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCeE-E
Confidence 999999997 699999999999999999999999 9999999999999999987543211 112111 1222 2
Q ss_pred ecCCCCCceEEEEEeecCCCCCCC-CchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCee
Q 015795 303 QADSGDQLTHFVLAFELPGGWHKD-KDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSC 381 (400)
Q Consensus 303 ~~~~~~~qs~v~~~~~~~~~~~~~-~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~ 381 (400)
...+..++..+.++|+.|. ... .+.....+++.+||++.++ +|+..|+ ++|++
T Consensus 280 ~~~~~~~~~~l~l~~~~p~--~~~~~~~~~~~~l~~ll~~~~~g-----------------------~l~~~L~-~~gla 333 (961)
T PRK15101 280 HYVPAQPRKVLRVEFRIDN--NSAKFRSKTDEYISYLIGNRSPG-----------------------TLSDWLQ-KQGLA 333 (961)
T ss_pred EEEECCCCcEEEEEEecCC--cHHHHhhCHHHHHHHHhcCCCCC-----------------------cHHHHHH-HcCcc
Confidence 2112226788999999886 222 1233578899999997666 7888885 79999
Q ss_pred EEEEeeec
Q 015795 382 IFIFSFQG 389 (400)
Q Consensus 382 Ysv~s~~~ 389 (400)
|+++++..
T Consensus 334 ~~v~s~~~ 341 (961)
T PRK15101 334 EGISAGAD 341 (961)
T ss_pred ceeeeccc
Confidence 99998754
No 6
>PTZ00432 falcilysin; Provisional
Probab=99.97 E-value=3e-30 Score=276.20 Aligned_cols=285 Identities=16% Similarity=0.134 Sum_probs=230.1
Q ss_pred CceEEEEcCCCcEEEEEeCCC---CEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcC--Cee
Q 015795 77 GKTKISTLPNGVKIASETSVS---PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIG--GNV 151 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~---~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g--~~~ 151 (400)
..+.....+||++|++..++. +.+.+.++++.|+. ...|++|+++||++.||++++..++...++..| +.+
T Consensus 90 ~~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~----d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~l 165 (1119)
T PTZ00432 90 VATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPPH----NDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFL 165 (1119)
T ss_pred EEEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCCC----CCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCc
Confidence 345666778999999665544 37899999999973 457999999999999999999999999998755 789
Q ss_pred EEEeccceEEEEEEecCC-CHHHHHHHHHHhhcCCCCCHHHH--H---------HH--------------------HHHH
Q 015795 152 QASASREQMGYSFDALKT-YVPEMVELLIDCVRNPVFLDWEV--N---------EQ--------------------LTKV 199 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-~l~~~l~ll~~~l~~p~f~~~~~--~---------~~--------------------k~~~ 199 (400)
+++++.|++.|.+.++.+ ++..+++++.+.+.+|.|+++++ . +. +..+
T Consensus 166 NA~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV 245 (1119)
T PTZ00432 166 NAYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIV 245 (1119)
T ss_pred cccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHH
Confidence 999999999999999885 79999999999999999988763 2 21 6679
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhh
Q 015795 200 KSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL 278 (400)
Q Consensus 200 ~~~l~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~ 278 (400)
.+|++...++|...+.+.+.+.+|+|||+++..|++++|..++.++|++||+++|.|+|++|+++| ++++++.++++++
T Consensus 246 ~~Emk~~~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~ 325 (1119)
T PTZ00432 246 YSEMKKRFSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNY 325 (1119)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHH
Confidence 999999999999999999998888889999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCCCCCC------CC---CCCC--CCCCCceEEe--c-CCCCCceEEEEE-eecCCCC----------CCCCchHHHH
Q 015795 279 LSDLPSIHP------RE---EPKS--VYTGGDYRCQ--A-DSGDQLTHFVLA-FELPGGW----------HKDKDAMTLT 333 (400)
Q Consensus 279 ~~~l~~~~~------~~---~~~~--~~~~~~~~~~--~-~~~~~qs~v~~~-~~~~~~~----------~~~~d~~~l~ 333 (400)
|+.+|.... +. .+.+ .+..+...+. . ..+..+.++.++ |..++.. .+.++..++.
T Consensus 326 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~ 405 (1119)
T PTZ00432 326 LTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALL 405 (1119)
T ss_pred HhhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHH
Confidence 988875421 00 0111 1111222221 1 112246667775 9774210 1235789999
Q ss_pred HHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEE-Eeeec
Q 015795 334 VLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFI-FSFQG 389 (400)
Q Consensus 334 vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv-~s~~~ 389 (400)
||+.+|||+.+| +|+++||| .|++|++ +++.+
T Consensus 406 VLs~lLggg~sS-----------------------~L~q~LrE-~GLa~svv~~~~~ 438 (1119)
T PTZ00432 406 VLNYLLLGTPES-----------------------VLYKALID-SGLGKKVVGSGLD 438 (1119)
T ss_pred HHHHHHcCCCcc-----------------------HHHHHHHh-cCCCcCCCcCccc
Confidence 999999999999 99999997 8999995 44443
No 7
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.96 E-value=1.3e-27 Score=217.46 Aligned_cols=259 Identities=28% Similarity=0.470 Sum_probs=226.5
Q ss_pred eEEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEeccc
Q 015795 79 TKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASRE 158 (400)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~ 158 (400)
-...+|.||++|...+.+.++.++.+.|++|+++|+..+.|++|++....++.|.+++...|.+..+..||.++..+++|
T Consensus 23 ~~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe 102 (429)
T KOG2583|consen 23 SKTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATRE 102 (429)
T ss_pred hhhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeecc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCCCCCChHh
Q 015795 159 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL-TKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESA 237 (400)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k-~~~~~~l~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~ 237 (400)
.+.+++++++++++..+.+|.+++.+|.|.+||++... ..+..++. ..+|...+.+.+|+++|.+.++++.+.+.-.
T Consensus 103 ~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~--~~t~~~~a~e~lH~aAfRngLgnslY~p~~~ 180 (429)
T KOG2583|consen 103 LIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLA--YQTPYTIAIEQLHAAAFRNGLGNSLYSPGYQ 180 (429)
T ss_pred eEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhh--hcChHHHHHHHHHHHHHhcccCCcccCCccc
Confidence 99999999999999999999999999999999999888 55555444 5789999999999999944999999888888
Q ss_pred hcccCHHHHHHHHHhhcCCCCeEEEEEcCCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCceEEecCCCCCceEEEEEe
Q 015795 238 INRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAF 317 (400)
Q Consensus 238 l~~it~~~l~~f~~~~~~~~~~~l~vvGv~~~~l~~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~qs~v~~~~ 317 (400)
+.+++.++|.+|..++|...|++++.+|+|++.++...++++ .++...+....+..+.+++.+..... ...+|.++-
T Consensus 181 vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~~~L~~~~~~~~-~~~~~~~~k~a~a~~~gGe~Rk~~~g--~~~~v~vag 257 (429)
T KOG2583|consen 181 VGSVSSSELKDFAAKHFVKGNAVLVGVNVDHDDLKQFADEYA-PIRDGLPLKPAPAKYSGGEARKDARG--NRVHVAVAG 257 (429)
T ss_pred ccCccHHHHHHHHHHHhhccceEEEecCCChHHHHHHHHHhc-cccCCCCCCCCCccccCCccccccCC--ceeEEEEec
Confidence 999999999999999999999999999999999999999983 23333333334456778887766555 788888776
Q ss_pred ecCCCCCCCCchHHHHHHHHHcCCCC
Q 015795 318 ELPGGWHKDKDAMTLTVLQVMISNPH 343 (400)
Q Consensus 318 ~~~~~~~~~~d~~~l~vL~~lLggg~ 343 (400)
++-.. .+.++..+..++.++||...
T Consensus 258 egAAa-~~~k~~~a~av~~~~Lg~~~ 282 (429)
T KOG2583|consen 258 EGAAA-GNLKVLAAQAVLLAALGNSA 282 (429)
T ss_pred Ccccc-cchHHHHHHHHHHHHHhccc
Confidence 65543 35788889999999999754
No 8
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.1e-26 Score=230.34 Aligned_cols=291 Identities=18% Similarity=0.200 Sum_probs=241.4
Q ss_pred CCCCceEEEEcCCCcEEEEE-eCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCC-ChHHHHHHHHHcCCee
Q 015795 74 VEPGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAIGGNV 151 (400)
Q Consensus 74 ~~~~~~~~~~L~NG~~v~~~-~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~-s~~~l~~~l~~~g~~~ 151 (400)
.+...++..+|+||+++.+- +...+.+...+.++.|+..+|.+.+|+||++|||+|.|++++ ....+...|..+||+.
T Consensus 19 ~d~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~ 98 (937)
T COG1025 19 LDDRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSH 98 (937)
T ss_pred ccCcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCcc
Confidence 44468999999999999854 555579999999999999999999999999999999999998 5567999999999999
Q ss_pred EEEeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCC
Q 015795 152 QASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANP 230 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~ 230 (400)
++++..+.+.|.++...+.++.+|+.+++.+.+|.|+.+.+++++..+-.|......+-...+.+.....+- +||+.+.
T Consensus 99 NA~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srF 178 (937)
T COG1025 99 NASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKF 178 (937)
T ss_pred ccccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999888888888887777777 9999999
Q ss_pred CCCChHhhcc----cCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCCC--CCC----CCCc
Q 015795 231 LLAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVY----TGGD 299 (400)
Q Consensus 231 ~~~~~~~l~~----it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~~--~~~----~~~~ 299 (400)
..|..++|.. ...++|.+||+++|.+++|+++|.| -+.+++.+++.++||.+|......++. |.+ ++..
T Consensus 179 s~GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~i 258 (937)
T COG1025 179 STGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKI 258 (937)
T ss_pred CCCChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCce
Confidence 9999999987 5578999999999999999999999 999999999999999999765433322 222 2333
Q ss_pred eEEecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcC
Q 015795 300 YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRN 379 (400)
Q Consensus 300 ~~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g 379 (400)
+++.... +.-.+.+.|+.++.. ..-..-....+..++|.-+.. -|-..|-+ +|
T Consensus 259 i~i~p~~--~~~~L~i~f~i~~~~-~~~~~~~~~~~s~Lig~es~g-----------------------sL~~~Lk~-~G 311 (937)
T COG1025 259 IHIVPAK--PRPRLRIYFPIDDNS-AKFRSKPDEYLSHLIGNESPG-----------------------SLLAWLKK-QG 311 (937)
T ss_pred EEeccCC--CCceEEEEEEcCCcc-cccccCCHHHHHHHhccCCCc-----------------------hHHHHHHh-cc
Confidence 3333223 567788999988731 222244667788889874322 46666666 78
Q ss_pred eeEEEEeeeccc
Q 015795 380 SCIFIFSFQGLH 391 (400)
Q Consensus 380 ~~Ysv~s~~~~~ 391 (400)
|+=++.+...+.
T Consensus 312 lit~l~a~~~~~ 323 (937)
T COG1025 312 LITELSAGLDPI 323 (937)
T ss_pred chhhhccccccc
Confidence 877777655443
No 9
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.1e-26 Score=232.53 Aligned_cols=286 Identities=15% Similarity=0.139 Sum_probs=241.9
Q ss_pred CceEEEEcCCCcEEEEEeCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCC-ChHHHHHHHHHcCCeeEEE
Q 015795 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAIGGNVQAS 154 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~-s~~~l~~~l~~~g~~~~~~ 154 (400)
..+...+|+||+++.+-..+ .+.++..+-+..|+..|+.+.+|+||++|||+|.||.++ +..++...+..+||+-+++
T Consensus 26 r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~ 105 (974)
T KOG0959|consen 26 REYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAY 105 (974)
T ss_pred cceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccc
Confidence 47899999999999854445 458888999999999999999999999999999999998 4667888999999999999
Q ss_pred eccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCC
Q 015795 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~ 233 (400)
++.+.+.|.+....+.++.+|+.+++.+.+|.|+++..++++..+..|.++..++-.+...+....+.- +||+++...|
T Consensus 106 T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tG 185 (974)
T KOG0959|consen 106 TDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTG 185 (974)
T ss_pred cccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhcccc
Confidence 999999999999999999999999999999999999999999999999999888888888777777777 9999999999
Q ss_pred ChHhhcccC-----HHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCCC--CCC----CCCceE
Q 015795 234 PESAINRLN-----STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVY----TGGDYR 301 (400)
Q Consensus 234 ~~~~l~~it-----~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~~--~~~----~~~~~~ 301 (400)
..++|.... .+.|.+||+++|.+++|+++|+| .+.|.+..++.+.|+.++....+.+.. +++ .++.+.
T Consensus 186 N~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~p~~~e~~~~~~~ 265 (974)
T KOG0959|consen 186 NKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKLVR 265 (974)
T ss_pred chhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCCCCChHHhCcEEE
Confidence 999999888 89999999999999999999999 999999999999999988765443321 222 234445
Q ss_pred EecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCee
Q 015795 302 CQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSC 381 (400)
Q Consensus 302 ~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~ 381 (400)
+.... .-..+.+.|+.|+. ...-+.-....+..++|.-+.+ -|...||. +||+
T Consensus 266 v~pik--~~~~l~is~~~p~~-~~~y~~kP~~y~~hLigheg~G-----------------------SL~~~Lk~-~gw~ 318 (974)
T KOG0959|consen 266 VVPIK--DGRSLMISWPVPPL-NHHYKSKPLRYLSHLIGHEGPG-----------------------SLLSYLKR-LGWA 318 (974)
T ss_pred EEecc--ccceEEEEEecCCc-ccccccCcHHHHHHHhccCCcc-----------------------hHHHHHHH-hhch
Confidence 54333 55667788999974 3555566778888888874333 58888887 7888
Q ss_pred EEEEeeec
Q 015795 382 IFIFSFQG 389 (400)
Q Consensus 382 Ysv~s~~~ 389 (400)
=+..+...
T Consensus 319 ~sl~a~~~ 326 (974)
T KOG0959|consen 319 TSLEAGIP 326 (974)
T ss_pred heeecCCC
Confidence 77776554
No 10
>PRK15101 protease3; Provisional
Probab=99.95 E-value=6.4e-26 Score=244.29 Aligned_cols=301 Identities=11% Similarity=0.085 Sum_probs=230.9
Q ss_pred CCcccCCCCCCCCCC---CCCCCCCceEEEEcCCCcEEEEEeCC----CCEEEEEEEEcccccCCCCCCCcHHHHHHHHH
Q 015795 56 SLDFPLPGVSLPPSL---PDYVEPGKTKISTLPNGVKIASETSV----SPVASISLYVGCGSIYESPISFGTTHLLERMA 128 (400)
Q Consensus 56 ~l~~pL~~~~~p~~~---~~~~~~~~~~~~~L~NG~~v~~~~~~----~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~ 128 (400)
.+..|-++..+|+.. +.......++.+.++||++||+.+.+ .|.+.+.+.+.+|...+++...|++.++..|+
T Consensus 497 ~l~lP~~n~fip~~~~~~~~~~~~~~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll 576 (961)
T PRK15101 497 ALSLPELNPYIPDDFSLIKADKAYKHPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLA 576 (961)
T ss_pred cCCCCCCCCccCCCCeeccCCCCCCCCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 355666666666632 11122234688999999999976543 48999999999999999888999999999887
Q ss_pred hccCCCCChHHHHHHHHHcCCeeEEEeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcC
Q 015795 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSN 208 (400)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~ 208 (400)
+.+..++....+..|.+++.. +.+++.+++++++++++.+|+++.+.+.+|.|++++|+++|+.+++++++..+
T Consensus 577 -----~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~ 650 (961)
T PRK15101 577 -----GLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEK 650 (961)
T ss_pred -----HHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 334456666677789999999 79999999999999999999999999999999999999999999999997554
Q ss_pred CHHHHHHHHHHH-Hhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCC
Q 015795 209 NPQSLLLEAIHS-AGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSI 285 (400)
Q Consensus 209 ~p~~~~~~~l~~-~~~-~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~ 285 (400)
+ ..+.+.+.. ..+ .|||+.+ .++.+.|+++|.++|++||+++|.+.+++++|+| ++.+++.++++++++.++..
T Consensus 651 ~--~~~~~~~~~~~~~~~~py~~~-~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~ 727 (961)
T PRK15101 651 G--KAYEQAIMPAQMLSQVPYFER-DERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGAD 727 (961)
T ss_pred c--CcHHHHHHHHHHHhcCCCCCH-HHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccC
Confidence 2 223333332 345 8999864 4678999999999999999999999999999999 99999999999988887643
Q ss_pred CCCC-CC--CCCCCCCceEEecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCccccccccccccccccee
Q 015795 286 HPRE-EP--KSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIR 362 (400)
Q Consensus 286 ~~~~-~~--~~~~~~~~~~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~ 362 (400)
+... .. .....+............+..+.++|..++ . +.....+++.+||++++|
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~---~~~~~~v~~~lLg~~~ss----------------- 785 (961)
T PRK15101 728 GTEWWRGKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTG--Y---DEYQSSAYSSLLGQIIQP----------------- 785 (961)
T ss_pred CcccccccceEeCCCCeEEEecCCCCCCCeEEEEEEeCC--C---CCHHHHHHHHHHHHHHhH-----------------
Confidence 2211 10 001112222232222335666777775443 1 347889999999999888
Q ss_pred eeeccchhhHHHHhhcCeeEEEEeeecccee
Q 015795 363 IWYIDGSFYLHLRFMRNSCIFIFSFQGLHLY 393 (400)
Q Consensus 363 ~~~~~~~L~~~iRe~~g~~Ysv~s~~~~~~~ 393 (400)
+||++||||+||+|+|+|+......
T Consensus 786 ------rlf~~LRtk~qLgY~V~s~~~~~~~ 810 (961)
T PRK15101 786 ------WFYNQLRTEEQLGYAVFAFPMSVGR 810 (961)
T ss_pred ------HHHHHHHHHhhhceEEEEEeeccCC
Confidence 9999999999999999998766544
No 11
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.91 E-value=2.6e-23 Score=174.54 Aligned_cols=146 Identities=37% Similarity=0.565 Sum_probs=138.6
Q ss_pred EEEEEeC-CCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEeccceEEEEEEec
Q 015795 89 KIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (400)
Q Consensus 89 ~v~~~~~-~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (400)
||++.+. ..+.+++.+++++|+++|++...|++|++++|++.|+.+++..++.+.++..|+.+++.++++++.|.++++
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~ 80 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVL 80 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEe
Confidence 5776555 668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCC
Q 015795 168 KTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (400)
Q Consensus 168 ~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~ 234 (400)
+++++.+|+++.+++.+|.|++++|+++|..+..++++..++|...+.+.+++.+| ++||+++..|+
T Consensus 81 ~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 81 SEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp GGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred cccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 99999998776
No 12
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.77 E-value=3.9e-17 Score=165.76 Aligned_cols=280 Identities=13% Similarity=0.158 Sum_probs=216.6
Q ss_pred ceEEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHH-HHHHH-cCCeeEEEe
Q 015795 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIV-REVEA-IGGNVQASA 155 (400)
Q Consensus 78 ~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~-~~l~~-~g~~~~~~~ 155 (400)
.+....-++|++++.-.++.+...+.+.|+ .++....|++|.+||+.+.|+.+++..+.- ..+.+ ++--+++.+
T Consensus 21 ~~~~~H~~TGa~l~hi~~~d~~~vFsi~F~----T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T 96 (978)
T COG1026 21 GYILEHEKTGAELAHIKNEDPNNVFSIAFK----TEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFT 96 (978)
T ss_pred eEEEeeccCCceEEEecCCCcCceEEEEee----cCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhcc
Confidence 344444468999997766666666666666 455567899999999999999999887743 33333 555689999
Q ss_pred ccceEEEEEEecC-CCHHHHHHHHHHhhcCCCCCHHHHHHH--------------HHHHHHHHHhhcCCHHHHHHHHHHH
Q 015795 156 SREQMGYSFDALK-TYVPEMVELLIDCVRNPVFLDWEVNEQ--------------LTKVKSEISEVSNNPQSLLLEAIHS 220 (400)
Q Consensus 156 ~~~~~~~~~~~~~-~~l~~~l~ll~~~l~~p~f~~~~~~~~--------------k~~~~~~l~~~~~~p~~~~~~~l~~ 220 (400)
..|.+.|-+++.. +++-.++.+..|.+++|.++++.|.++ +..+-.|++....++..++.+.+.+
T Consensus 97 ~~D~T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~ 176 (978)
T COG1026 97 FPDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQ 176 (978)
T ss_pred CCCcceeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHH
Confidence 9999999987755 689999999999999999999988766 2345567777889999999999999
Q ss_pred Hhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhh-cCCCCCCCCCCC-CC-CCC
Q 015795 221 AGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL-LSDLPSIHPREE-PK-SVY 295 (400)
Q Consensus 221 ~~~-~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~-~~~l~~~~~~~~-~~-~~~ 295 (400)
.+| +..|+....|.++.|..++.+++++||+++|.|+|+.+.++| ++.+++.+.++.. +...++.....+ +. ..+
T Consensus 177 slfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~ 256 (978)
T COG1026 177 SLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAF 256 (978)
T ss_pred hhCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCccccc
Confidence 999 899999999999999999999999999999999999999999 9999999999887 544443331111 11 111
Q ss_pred C---CC--ceEEe-cCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccch
Q 015795 296 T---GG--DYRCQ-ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGS 369 (400)
Q Consensus 296 ~---~~--~~~~~-~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~ 369 (400)
. .. ...+. ...+..|+.+.+.|.++.. .+..+..++.||..+|-++.+| .
T Consensus 257 ~~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~~-~d~~~~lal~vL~~iLl~~~as-----------------------P 312 (978)
T COG1026 257 KKPRRKVLEYPISFDEEDEDQGLLSLSWLGGSA-SDAEDSLALEVLEEILLDSAAS-----------------------P 312 (978)
T ss_pred CcccccceeeccCCCCCCCceeEEEEEEecCCc-ccHHHHHHHHHHHHHHccCccc-----------------------H
Confidence 1 11 11121 2233478999999999874 4667889999999999998777 8
Q ss_pred hhHHHHhhcCee-EEEEe
Q 015795 370 FYLHLRFMRNSC-IFIFS 386 (400)
Q Consensus 370 L~~~iRe~~g~~-Ysv~s 386 (400)
|.+.|=| -|++ +.++.
T Consensus 313 l~~~lie-sglg~~~~~g 329 (978)
T COG1026 313 LTQALIE-SGLGFADVSG 329 (978)
T ss_pred HHHHHHH-cCCCcccccc
Confidence 9999888 5666 44333
No 13
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.8e-15 Score=144.28 Aligned_cols=288 Identities=15% Similarity=0.104 Sum_probs=200.8
Q ss_pred EEcCCCcEEEEEeCCCC-EEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEecc---
Q 015795 82 STLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR--- 157 (400)
Q Consensus 82 ~~L~NG~~v~~~~~~~~-~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~--- 157 (400)
...-||++|...+.+.+ ++++++.++.++..+. -.+-++-+++.++..||...+..++.+.+..+.|.++++...
T Consensus 564 v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~e-L~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~ 642 (998)
T KOG2019|consen 564 VGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEE-LLPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVSSD 642 (998)
T ss_pred eeeccCceeEEeeccCCceEEEEEeeccccCcHH-hhcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceeccC
Confidence 44579999998887766 9999999999998776 467799999999999999999999999999987777765421
Q ss_pred -------ceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCC
Q 015795 158 -------EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALA 228 (400)
Q Consensus 158 -------~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~-~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~ 228 (400)
-.+.++..++.++.+.+++|+..++.++.|++++ |.....+...++.+.-.+....+...-..+.+ ....-
T Consensus 643 ~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i 722 (998)
T KOG2019|consen 643 DGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWI 722 (998)
T ss_pred CCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccch
Confidence 2478888999999999999999999999997654 56666666666665444444333333333333 21111
Q ss_pred CCCCCChHhhc---ccC----------HHHHHHHHHhhcCCCCeEEEEEc--CCHHHHHHHHHhhcCCCCCCCCCCC---
Q 015795 229 NPLLAPESAIN---RLN----------STLLEEFVAENYTGPRMVLAASG--VEHDQLVSVAEPLLSDLPSIHPREE--- 290 (400)
Q Consensus 229 ~~~~~~~~~l~---~it----------~~~l~~f~~~~~~~~~~~l~vvG--v~~~~l~~lv~~~~~~l~~~~~~~~--- 290 (400)
...++-.++++ ++. .+.|.++.+-..+.++|.+.+.. ..+..+++.+++++..+|...+...
T Consensus 723 ~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st 802 (998)
T KOG2019|consen 723 SEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKST 802 (998)
T ss_pred HhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCccC
Confidence 11122222222 111 23566666666788999999888 8889999999999998885332221
Q ss_pred CCCCCC--CCceEEecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccc
Q 015795 291 PKSVYT--GGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDG 368 (400)
Q Consensus 291 ~~~~~~--~~~~~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~ 368 (400)
..+... ...+++..+. .+..++.-+..+.+ ++++|..++.|++.+|...
T Consensus 803 ~d~r~p~~~~~i~~~~P~-fqvnyvgka~~~vp--yt~~d~asl~vlS~~lt~k-------------------------- 853 (998)
T KOG2019|consen 803 WDARLPLRSEAIRVVIPT-FQVNYVGKAGLGVP--YTHPDGASLQVLSKLLTNK-------------------------- 853 (998)
T ss_pred ccccCCCCceeEEEeccc-cchhhhhhhccccc--CCCCCCcHHHHHHHHHHHH--------------------------
Confidence 111111 1122233332 13455555666666 8999999999999999864
Q ss_pred hhhHHHHhhcCeeEEEEe-eeccceeeeeccCC
Q 015795 369 SFYLHLRFMRNSCIFIFS-FQGLHLYFSFHGFY 400 (400)
Q Consensus 369 ~L~~~iRe~~g~~Ysv~s-~~~~~~~~~~~~~~ 400 (400)
+||.+||| .|+||+.++ +....+.|+|++|+
T Consensus 854 ~Lh~evRe-kGGAYGgg~s~~sh~GvfSf~SYR 885 (998)
T KOG2019|consen 854 WLHDEVRE-KGGAYGGGCSYSSHSGVFSFYSYR 885 (998)
T ss_pred HHHHHHHH-hcCccCCccccccccceEEEEecc
Confidence 99999999 566776665 44555669999885
No 14
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.69 E-value=4.8e-15 Score=150.79 Aligned_cols=298 Identities=17% Similarity=0.174 Sum_probs=197.6
Q ss_pred CCCCCCCceEEEEcCCCcEEEEEeCCC-CEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCC
Q 015795 71 PDYVEPGKTKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG 149 (400)
Q Consensus 71 ~~~~~~~~~~~~~L~NG~~v~~~~~~~-~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~ 149 (400)
|+..+....+ ..-.|..+|+..+... .++++.++++.+..... ..+-+.-+...+...||.++++.++...++.+.|
T Consensus 520 p~~~~k~~l~-~~~~~~~~v~~~~~~tn~i~yl~~~~~~~~l~~~-llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~TG 597 (978)
T COG1026 520 PDPIEKTSLE-TEVSNEAKVLHHDLFTNGITYLRLYFDLDMLPSE-LLPYLPLFAFALTNLGTETYSYKELLNQIERHTG 597 (978)
T ss_pred CCccccccee-eeccCCcceEEeecCCCCeEEEEEEeecCCCChh-hhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHHhC
Confidence 4444433333 3446788888777765 59999999999666554 4666777777777889999999999999998766
Q ss_pred eeEEEecc-----------ceEEEEEEecCCCHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHhhcCC-HHHHHHH
Q 015795 150 NVQASASR-----------EQMGYSFDALKTYVPEMVELLIDCVRNPVF-LDWEVNEQLTKVKSEISEVSNN-PQSLLLE 216 (400)
Q Consensus 150 ~~~~~~~~-----------~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f-~~~~~~~~k~~~~~~l~~~~~~-p~~~~~~ 216 (400)
.+++..+. ..+.++++++.++.+++++++.+++.++.| |.+.+....++++..+.....+ +...+..
T Consensus 598 gis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~ 677 (978)
T COG1026 598 GISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASS 677 (978)
T ss_pred CceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHH
Confidence 55554432 368999999999999999999999999999 6666777777777777755444 6655555
Q ss_pred HHHHHhc-CCCCCCCCCC--ChHhhcccC-----------HHHHHHHHHhhcCCCCeEEEEEcCCHHHHHHHHHhhcCCC
Q 015795 217 AIHSAGY-SGALANPLLA--PESAINRLN-----------STLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDL 282 (400)
Q Consensus 217 ~l~~~~~-~~p~~~~~~~--~~~~l~~it-----------~~~l~~f~~~~~~~~~~~l~vvGv~~~~l~~lv~~~~~~l 282 (400)
.....++ ...+.....| ..+-|..+. .+.|++.+++.+..+++-+++.| +.+++.+.+++-|-++
T Consensus 678 ~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~-~~~~~~~~~e~~l~~~ 756 (978)
T COG1026 678 LANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIG-DIDKILDLLENPLLKF 756 (978)
T ss_pred HhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEec-ChhhhHHHHHHHhhhh
Confidence 5555444 3322211111 112233322 24688889999999999888888 2223344444433333
Q ss_pred CC-----CCCCCCC---CCCCCC-CceEEecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCccccccccc
Q 015795 283 PS-----IHPREEP---KSVYTG-GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPF 353 (400)
Q Consensus 283 ~~-----~~~~~~~---~~~~~~-~~~~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~ 353 (400)
.. ...+.++ .....+ .......+. +.++.+++|+.-...+.++|.+++.|+..+|+.+
T Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~--p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~~----------- 823 (978)
T COG1026 757 LEHLLPGFELPTPPKNPHLDLISSLSEATIIPS--PVAYNALAFSIGGLPYTHPDYAALQVLSEYLGSG----------- 823 (978)
T ss_pred hcccCcccccCCCCCCcchhhhccccceEEecc--HHHHHHHhhhccCCCCCCccchHHHHHHHHhccc-----------
Confidence 21 1111111 111112 222222233 4455555664333227999999999999999965
Q ss_pred ccccccceeeeeccchhhHHHHhhcCeeEEEEeeeccc-eeeeeccCC
Q 015795 354 NTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLH-LYFSFHGFY 400 (400)
Q Consensus 354 ~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~~~~-~~~~~~~~~ 400 (400)
.||.+||| .|+||+.+++.+.. +.|.|.+|+
T Consensus 824 ---------------~lw~~IR~-~GGAYGa~as~~~~~G~f~f~sYR 855 (978)
T COG1026 824 ---------------YLWNKIRE-KGGAYGASASIDANRGVFSFASYR 855 (978)
T ss_pred ---------------hhHHHHHh-hccccccccccccCCCeEEEEecC
Confidence 99999999 89999999988776 779998885
No 15
>PTZ00432 falcilysin; Provisional
Probab=99.66 E-value=1.2e-14 Score=156.81 Aligned_cols=284 Identities=13% Similarity=0.079 Sum_probs=192.1
Q ss_pred cCCCcEEEEEeCCCC-EEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEe----c--
Q 015795 84 LPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA----S-- 156 (400)
Q Consensus 84 L~NG~~v~~~~~~~~-~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~----~-- 156 (400)
..+|++|+.++.+.+ ++++.++++...+.+. ..+-+.-+...+...||.++++.++...++...|++++++ +
T Consensus 665 ~~~~~~~~~~~~~TnGi~y~~~~fdl~~l~~e-~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~~ 743 (1119)
T PTZ00432 665 DGGSVTVLVHPIESRGILYLDFAFSLDSLTVD-ELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSETN 743 (1119)
T ss_pred cCCCcceEEEecCCCCeEEEEEEecCCCCCHH-HHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEecccc
Confidence 458999998888877 9999999999987764 3444444444445579999999999999999777666542 2
Q ss_pred ----------cceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhc-
Q 015795 157 ----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEVSN-NPQSLLLEAIHSAGY- 223 (400)
Q Consensus 157 ----------~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~-~~~~k~~~~~~l~~~~~-~p~~~~~~~l~~~~~- 223 (400)
...+.++++++.++++++++++.+++.++.|++.+ +....++.+..+++... +....+...+.....
T Consensus 744 ~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~ 823 (1119)
T PTZ00432 744 NLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSV 823 (1119)
T ss_pred ccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCH
Confidence 23689999999999999999999999999998765 66667777777665443 444444432222111
Q ss_pred -----CCCCCCCCCCChHhh---------cccCHHHHHHHHHhhcCCCCeEEEEEc-C-CHHHHHHHHHhhcCCCCCC--
Q 015795 224 -----SGALANPLLAPESAI---------NRLNSTLLEEFVAENYTGPRMVLAASG-V-EHDQLVSVAEPLLSDLPSI-- 285 (400)
Q Consensus 224 -----~~p~~~~~~~~~~~l---------~~it~~~l~~f~~~~~~~~~~~l~vvG-v-~~~~l~~lv~~~~~~l~~~-- 285 (400)
+.-.|.+.+.-.+.+ +.+ .+.|.++++..|+.+++.+.++| . ..+.+.+.+..++..++..
T Consensus 824 ~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v-~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~ 902 (1119)
T PTZ00432 824 SDYADELVNGYSQLLFLKETLVPLAEKDWSKV-ESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFK 902 (1119)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhcccccc
Confidence 111111110011111 111 24578888999999999999999 4 4456666666677666421
Q ss_pred --C--CCCCCCC----C---CCC--CceEEecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccc
Q 015795 286 --H--PREEPKS----V---YTG--GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFP 352 (400)
Q Consensus 286 --~--~~~~~~~----~---~~~--~~~~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~ 352 (400)
. ....+.. . +.. ....+..+. ...+|..+.+... +.+++..++.|+..+|..+
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~V~yv~~~~~~~~--~~~~~~~~l~Vl~~~L~~~---------- 968 (1119)
T PTZ00432 903 ENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPT--RVNFVGMGGKLFD--KSDKVDGSFQVIVHYLKNS---------- 968 (1119)
T ss_pred cccccccccccccccccccccCCcccceEEEccC--ceeEEEEeccccc--CCCccCHHHHHHHHHHccc----------
Confidence 1 0100100 0 111 111222233 6667777644333 5677899999999999865
Q ss_pred cccccccceeeeeccchhhHHHHhhcCeeEEEEeeeccceeeeeccCC
Q 015795 353 FNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGFY 400 (400)
Q Consensus 353 ~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~~~~~~~~~~~~~ 400 (400)
+||++||+ +|+||++++.....+.+.|++|+
T Consensus 969 ----------------yLw~~IR~-~GGAYG~~~~~~~~G~~~f~SYR 999 (1119)
T PTZ00432 969 ----------------YLWKTVRM-SLGAYGVFADLLYTGHVIFMSYA 999 (1119)
T ss_pred ----------------cchHHHcc-cCCccccCCccCCCCeEEEEEec
Confidence 99999999 89999999988888999999985
No 16
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.66 E-value=7.9e-16 Score=132.85 Aligned_cols=127 Identities=18% Similarity=0.260 Sum_probs=100.7
Q ss_pred ccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCC---CCCC--CC-C--CCCCCceEEecCCCCCc
Q 015795 240 RLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH---PREE--PK-S--VYTGGDYRCQADSGDQL 310 (400)
Q Consensus 240 ~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~---~~~~--~~-~--~~~~~~~~~~~~~~~~q 310 (400)
+||.++|++||+++|.|+||+++++| ++++++.++++++|+.|+... .... .. + ......+..... +..+
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSK-DESQ 79 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEES-SSSS
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccc-cccc
Confidence 47899999999999999999999999 999999999999999998653 1111 11 1 112222222222 2279
Q ss_pred eEEEEEeecCCCCC-CCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEeeec
Q 015795 311 THFVLAFELPGGWH-KDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQG 389 (400)
Q Consensus 311 s~v~~~~~~~~~~~-~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~~ 389 (400)
+.+.++|++++ . +.++..++.++..+|+++.++ +|+.+|||++|++|+++++..
T Consensus 80 ~~v~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~s-----------------------~l~~~lr~~~~l~y~v~~~~~ 134 (184)
T PF05193_consen 80 SIVSIAFPGPP--IKDSKDYFALNLLSSLLGNGMSS-----------------------RLFQELREKQGLAYSVSASNS 134 (184)
T ss_dssp EEEEEEEEEEE--TGTSTTHHHHHHHHHHHHCSTTS-----------------------HHHHHHHTTTTSESEEEEEEE
T ss_pred ccccccccccc--ccccchhhHHHHHHHHHhcCccc-----------------------hhHHHHHhccccceEEEeeee
Confidence 99999999998 5 889999999999999998888 999999999999999999876
Q ss_pred cce
Q 015795 390 LHL 392 (400)
Q Consensus 390 ~~~ 392 (400)
...
T Consensus 135 ~~~ 137 (184)
T PF05193_consen 135 SYR 137 (184)
T ss_dssp EES
T ss_pred ccc
Confidence 443
No 17
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.8e-15 Score=141.98 Aligned_cols=252 Identities=14% Similarity=0.177 Sum_probs=194.3
Q ss_pred CCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHH-cCCeeEEEeccceEEEEE
Q 015795 86 NGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA-IGGNVQASASREQMGYSF 164 (400)
Q Consensus 86 NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~-~g~~~~~~~~~~~~~~~~ 164 (400)
-|++|+.-+++++.+.=.+.+. .|...+.|++|-++|+.|.|+++++...+.+.+.. .=++.++.++.|++.|++
T Consensus 28 Tkl~va~~~~pts~vhG~f~v~----TEa~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtL 103 (1022)
T KOG0961|consen 28 TKLRVAIGEVPTSMVHGAFSVV----TEADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTL 103 (1022)
T ss_pred cceEEEEeecCCcceeeeEEee----eeecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEe
Confidence 4788887777777555555554 34445679999999999999999999988777765 446799999999999999
Q ss_pred EecC-CCHHHHHHHHHHhhcCCCCCHHHHHHHH----------HHHHHHHHhhcCCHHHHHHHHHHHHhc--CCCCCCCC
Q 015795 165 DALK-TYVPEMVELLIDCVRNPVFLDWEVNEQL----------TKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPL 231 (400)
Q Consensus 165 ~~~~-~~l~~~l~ll~~~l~~p~f~~~~~~~~k----------~~~~~~l~~~~~~p~~~~~~~l~~~~~--~~p~~~~~ 231 (400)
++-- +.+-.+|....+-+.+|.+++++|..+. ..+-.|.+..+......+.+.....+| .++|....
T Consensus 104 Stag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eT 183 (1022)
T KOG0961|consen 104 STAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVET 183 (1022)
T ss_pred ecccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceecc
Confidence 8754 6799999999999999999999998774 455666776666677778888889999 78898888
Q ss_pred CCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCC--CC---CCC----CCCC--C-C
Q 015795 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP--RE---EPK----SVYT--G-G 298 (400)
Q Consensus 232 ~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~--~~---~~~----~~~~--~-~ 298 (400)
.|-++.|+.++.+++++||+++|.++||++.|+| ++++++....+..-..++.... |+ .|. ..+. . .
T Consensus 184 GG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t 263 (1022)
T KOG0961|consen 184 GGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKEST 263 (1022)
T ss_pred CCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccc
Confidence 8899999999999999999999999999999999 9999999988765543432211 11 111 0111 1 1
Q ss_pred ceEEecC-CCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCC
Q 015795 299 DYRCQAD-SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNP 342 (400)
Q Consensus 299 ~~~~~~~-~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg 342 (400)
...++.+ .+..+..|.++|.+++. .+.....++.||-.+|...
T Consensus 264 ~~tVefp~~Des~G~v~~aW~g~s~-sD~~t~~a~~vL~dyls~s 307 (1022)
T KOG0961|consen 264 VHTVEFPTDDESRGAVEVAWFGHSP-SDLETHSALHVLFDYLSNS 307 (1022)
T ss_pred eeeeecCCcccccceEEEEEcCCCH-HHhhhHHHHHHHHHHhccc
Confidence 2233332 23368899999999873 3556678999999999874
No 18
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.9e-14 Score=136.17 Aligned_cols=283 Identities=13% Similarity=0.112 Sum_probs=212.1
Q ss_pred EEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHH-HHHHHHH-cCCeeEEEecc
Q 015795 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR-IVREVEA-IGGNVQASASR 157 (400)
Q Consensus 80 ~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~-l~~~l~~-~g~~~~~~~~~ 157 (400)
....-+-|.+++..+++.+--.+++.|+. .++...|++|++||-...|+.+++-.+ +.+.|.. +.--+++.+..
T Consensus 55 ~lkH~~Tgae~lhl~reD~N~vFsI~FrT----pp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~p 130 (998)
T KOG2019|consen 55 LLKHKKTGAEVLHLDREDENNVFSIVFRT----PPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAP 130 (998)
T ss_pred eeeecCCCceeEeeccCCCCceeEEEeec----CCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCC
Confidence 33344579999866655443334444443 344577999999999999999986543 5555543 45567888999
Q ss_pred ceEEEEEEec-CCCHHHHHHHHHHhhcCCCCCHHHHHHH------------------HHHHHHHHHhhcCCHHHHHHHHH
Q 015795 158 EQMGYSFDAL-KTYVPEMVELLIDCVRNPVFLDWEVNEQ------------------LTKVKSEISEVSNNPQSLLLEAI 218 (400)
Q Consensus 158 ~~~~~~~~~~-~~~l~~~l~ll~~~l~~p~f~~~~~~~~------------------k~~~~~~l~~~~~~p~~~~~~~l 218 (400)
|++.|-+++. ++++..+.++..|....|.+...+|..+ |..+-.|++....+|+..+...+
T Consensus 131 D~T~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~ 210 (998)
T KOG2019|consen 131 DYTFYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLF 210 (998)
T ss_pred CcceeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHH
Confidence 9999887664 5789999999999999999887777665 45667788888899999999999
Q ss_pred HHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCC-CCC-C
Q 015795 219 HSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKS-V 294 (400)
Q Consensus 219 ~~~~~-~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~-~~~-~ 294 (400)
.+.+| ++.|+-...|.+..|-.++.+++++||+++|.|+|+.+...| +..++...+++.-|....+.....+ ..+ .
T Consensus 211 Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~ 290 (998)
T KOG2019|consen 211 QQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKL 290 (998)
T ss_pred HHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccc
Confidence 99999 999999999999999999999999999999999999999999 9999999988877655543332221 111 1
Q ss_pred CCCC-ceEEe-----cCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccc
Q 015795 295 YTGG-DYRCQ-----ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDG 368 (400)
Q Consensus 295 ~~~~-~~~~~-----~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~ 368 (400)
+... .+... .+.+..|+.+.+.|-.+.. .+..+.+++.||..+|-+|.+|
T Consensus 291 f~kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~~p-~d~~etfaL~~L~~Ll~~gpsS----------------------- 346 (998)
T KOG2019|consen 291 FDKPRRVVEKGPADPGDLPKKQTKCSNSFLSNDP-LDTYETFALKVLSHLLLDGPSS----------------------- 346 (998)
T ss_pred cccCceeeeecCCCCCCCccceeEEEEEeecCCc-hhHHHHHHHHHHHHHhcCCCcc-----------------------
Confidence 2111 11111 1122368888888887764 4667889999999999999999
Q ss_pred hhhHHHHhhcCee--EEEEeeeccc
Q 015795 369 SFYLHLRFMRNSC--IFIFSFQGLH 391 (400)
Q Consensus 369 ~L~~~iRe~~g~~--Ysv~s~~~~~ 391 (400)
.||+.|=| -|+. .++.|.+.+.
T Consensus 347 p~yk~LiE-SGLGtEfsvnsG~~~~ 370 (998)
T KOG2019|consen 347 PFYKALIE-SGLGTEFSVNSGYEDT 370 (998)
T ss_pred HHHHHHHH-cCCCcccccCCCCCcc
Confidence 99999998 4544 6666655443
No 19
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.2e-13 Score=135.08 Aligned_cols=308 Identities=15% Similarity=0.158 Sum_probs=212.8
Q ss_pred CCCcccCCCCCCCCCCCC-CCC--CCceEEEEcCCCcEEEE-EeCCC---CEEEEEEEEcccccCCCCCCCcHHHHHHHH
Q 015795 55 PSLDFPLPGVSLPPSLPD-YVE--PGKTKISTLPNGVKIAS-ETSVS---PVASISLYVGCGSIYESPISFGTTHLLERM 127 (400)
Q Consensus 55 ~~l~~pL~~~~~p~~~~~-~~~--~~~~~~~~L~NG~~v~~-~~~~~---~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l 127 (400)
+.+..|.|+..+|+.... +.+ ....+...=..|.++|. .++.+ |...+.+.++...+..++....+..|...+
T Consensus 475 ~~l~lP~~N~fIp~~~~~~~~~~~~~~p~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~l 554 (937)
T COG1025 475 IELSLPEPNPFIPDDVSLIKSEKKFTFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYL 554 (937)
T ss_pred ccccCCCCCCCCCccccccccccCCCCchhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHH
Confidence 336678888888884321 111 11122222234556664 44433 789999999998888887677777778888
Q ss_pred HhccCCCCChHHHHHHHHHcCCeeEEEeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHh-h
Q 015795 128 AFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE-V 206 (400)
Q Consensus 128 ~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~-~ 206 (400)
++....++.+. ....|.+++...+.+++.+++++.++.++.+++.+.+.+..-.++++.|+..|+++.++++. .
T Consensus 555 a~dal~~~~y~-----A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~ 629 (937)
T COG1025 555 ANDALDKLSYQ-----ASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNAL 629 (937)
T ss_pred HHHHHHhhhhH-----HHhcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 76544444432 55688899999999999999999999999999999999999999999999999999999995 5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCC
Q 015795 207 SNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSI 285 (400)
Q Consensus 207 ~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~ 285 (400)
..+|..++.+.+...+-.+.+.+. ...+.++.++.+++.+|....+++....+.+.| ++.+++.++++.....++..
T Consensus 630 ~~~p~~~~~~~l~~l~~~~~~s~~--e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~ 707 (937)
T COG1025 630 TGKPYRQALDGLTGLLQVPYWSRE--ERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAI 707 (937)
T ss_pred hcCCHHHHHHHhhhhhCCCCcCHH--HHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhccc
Confidence 578888777777666641112221 234678899999999999999999999999999 99999999988766555543
Q ss_pred CCCCC-CC--CCCCCCceEEecCCCCCce-EEEEEeecCCCCCC-CCchHHHHHHHHHcCCCCCcccccccccccccccc
Q 015795 286 HPREE-PK--SVYTGGDYRCQADSGDQLT-HFVLAFELPGGWHK-DKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHV 360 (400)
Q Consensus 286 ~~~~~-~~--~~~~~~~~~~~~~~~~~qs-~v~~~~~~~~~~~~-~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~ 360 (400)
....- .+ ....++........+.+.+ ..++.+... ++ .++.+...++.+++..
T Consensus 708 ~s~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~---~~~~~~~a~s~Ll~~l~~~------------------- 765 (937)
T COG1025 708 GSTWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQ---YDEIKSSALSSLLGQLIHP------------------- 765 (937)
T ss_pred CCcccCCCceeccCCCeeEeeeccCCcccccceeEeccc---cchHHHHHHHHHHHHHHhH-------------------
Confidence 32111 11 1222333322211111333 333333332 34 4444555667777653
Q ss_pred eeeeeccchhhHHHHhhcCeeEEEEeeeccceeeeeccC
Q 015795 361 IRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGF 399 (400)
Q Consensus 361 ~~~~~~~~~L~~~iRe~~g~~Ysv~s~~~~~~~~~~~~~ 399 (400)
.+|.+||.|++++|.|++.........+.++
T Consensus 766 --------~ff~~LRTkeQLGY~Vfs~~~~v~~~~gi~f 796 (937)
T COG1025 766 --------WFFDQLRTKEQLGYAVFSGPREVGRTPGIGF 796 (937)
T ss_pred --------HhHHHhhhhhhcceEEEecceeecCccceEE
Confidence 8999999999999999998876666555544
No 20
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.3e-10 Score=115.87 Aligned_cols=298 Identities=15% Similarity=0.170 Sum_probs=216.7
Q ss_pred CCCcccCCCCCCCCC--C-CCCCCC-CceEEEEcCCCcEEEEEeC-CC--CEEEEEEEEcccccCCCCCCCcHHHHHHHH
Q 015795 55 PSLDFPLPGVSLPPS--L-PDYVEP-GKTKISTLPNGVKIASETS-VS--PVASISLYVGCGSIYESPISFGTTHLLERM 127 (400)
Q Consensus 55 ~~l~~pL~~~~~p~~--~-~~~~~~-~~~~~~~L~NG~~v~~~~~-~~--~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l 127 (400)
+.+..|.|+..+|.. + +.+.+. ..++...=....++|++.. .+ |.+.+.+.+.+......+...+++.+...+
T Consensus 482 ~~l~lP~~nefI~t~f~~~~~~~~~~~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~ 561 (974)
T KOG0959|consen 482 PELHLPTPNEFIPTDFSILPAPIPKLEYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRL 561 (974)
T ss_pred ccccCCCCCcccccccccccccCccccCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHH
Confidence 557888888877762 1 111111 1123333345678886544 33 699999999999999888888888888888
Q ss_pred HhccCCCCChHHHHHHHHHcCCeeEEEeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHh-h
Q 015795 128 AFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE-V 206 (400)
Q Consensus 128 ~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~-~ 206 (400)
+..-.... .-.....|..++.+.+..+..+++.+..++++.+++.+.+.+.+-..+++.|+..++.+..++++ .
T Consensus 562 l~d~l~E~-----~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~ 636 (974)
T KOG0959|consen 562 LKDQLNEY-----LYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHA 636 (974)
T ss_pred HHHHHhHH-----HHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhh
Confidence 75433332 33356688899999999999999999999999999999999999999999999999999999998 6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCC
Q 015795 207 SNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSI 285 (400)
Q Consensus 207 ~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~ 285 (400)
..+|..++...+.-.+-++.|... .-.+.++.++.+++..|-..++++.-+...|.| ++.+++.++++.....+...
T Consensus 637 ~~~p~~~a~~~~~lll~~~~W~~~--e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l~~~ 714 (974)
T KOG0959|consen 637 FDNPYQLANDYLLLLLEESIWSKE--ELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDILKSA 714 (974)
T ss_pred hccHHHHHHHHHHHHhhccccchH--HHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhhhcc
Confidence 677877766655544435555543 234778889999999999999999999999999 99999999876666555211
Q ss_pred CCCCCCC----------CC-CCCCceEEec--CCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccc
Q 015795 286 HPREEPK----------SV-YTGGDYRCQA--DSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFP 352 (400)
Q Consensus 286 ~~~~~~~----------~~-~~~~~~~~~~--~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~ 352 (400)
.+...+. .. ..|....... ....+.+.|...+.+.. .+..+...+.++.+++.+
T Consensus 715 ~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~--~~~~~~~~~~L~~~li~e----------- 781 (974)
T KOG0959|consen 715 APNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEVYYQIGV--QDTRDNAVLGLLEQLIKE----------- 781 (974)
T ss_pred CCCCccccccccCcccceeccCCceEEEEcccccCCCCceEEEEEEccc--chhHHHHHHHHHHHHhcc-----------
Confidence 1111110 11 1233332222 22235667777777643 577888889999999876
Q ss_pred cccccccceeeeeccchhhHHHHhhcCeeEEEEeee
Q 015795 353 FNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQ 388 (400)
Q Consensus 353 ~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~ 388 (400)
.+|+.||.|..++|-|++..
T Consensus 782 ----------------p~Fd~LRTkeqLGYiv~~~~ 801 (974)
T KOG0959|consen 782 ----------------PAFDQLRTKEQLGYIVSTGV 801 (974)
T ss_pred ----------------chHHhhhhHHhhCeEeeeee
Confidence 68999998888888888754
No 21
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=98.80 E-value=1.1e-07 Score=86.52 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=82.7
Q ss_pred CCCCCCCceEEEEcCCCcEEEEEeCCCC-EEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCC
Q 015795 71 PDYVEPGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG 149 (400)
Q Consensus 71 ~~~~~~~~~~~~~L~NG~~v~~~~~~~~-~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~ 149 (400)
+.+.+..+++... .+|++|+..+.+.+ ++++.++++.+.+.+. ..+-++-+...+...||+++++.++...+..+.|
T Consensus 63 ~~~~~~~~~~~~~-~~~~~v~~~~~~TnGI~Y~~l~fdl~~l~~e-~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tG 140 (248)
T PF08367_consen 63 PREIEKIPLEVEK-LGGIPVLFHEQPTNGIVYVRLYFDLSDLPEE-DLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTG 140 (248)
T ss_dssp -SS------EECC-CTTCEEEEEE---TTEEEEEEEEE-TTS-CC-CHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSS
T ss_pred CCCCCCCCceeee-cCCccEEEEEcCCCCeEEEEEEecCCCCCHH-HHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC
Confidence 4444444555444 37899998777766 9999999999977765 3455665555445579999999999999999888
Q ss_pred eeEEEecc-----------ceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHH
Q 015795 150 NVQASASR-----------EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE 191 (400)
Q Consensus 150 ~~~~~~~~-----------~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~ 191 (400)
++++++.. ..+.++++++.++++++++++.+++.++.|++.+
T Consensus 141 Gis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~ 193 (248)
T PF08367_consen 141 GISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKE 193 (248)
T ss_dssp EEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HH
T ss_pred CeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHH
Confidence 77776622 2588999999999999999999999999998764
No 22
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=97.68 E-value=0.0017 Score=62.09 Aligned_cols=183 Identities=19% Similarity=0.289 Sum_probs=104.2
Q ss_pred EEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEeccceEE
Q 015795 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (400)
Q Consensus 82 ~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (400)
..|+||+||...+.-...+++++. +.|.-.+-.+-.|+|||+||++- .+++..+ .-++++.+.+++
T Consensus 2 IvL~NGVRiFin~~M~KDIYlGIs-~FGFe~DI~~iLGiAHLLEHILI----sFD~~~F---------~ANASTaRsYMS 67 (590)
T PF03410_consen 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI----SFDSSKF---------LANASTARSYMS 67 (590)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee----ecchHHh---------hcccchhhhhhh
Confidence 479999999998877778888876 55665666678999999999974 2333222 246778888888
Q ss_pred EEEEecCCC--HHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc--CCCCCCCCCC
Q 015795 162 YSFDALKTY--VPEMVELLIDCVRNP----VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPLLA 233 (400)
Q Consensus 162 ~~~~~~~~~--l~~~l~ll~~~l~~p----~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~--~~p~~~~~~~ 233 (400)
|-+.+.+.. ++..=.++...+.+- .|+...++....++..|.- ..|- ...-+.-+.| ++-+-+- |
T Consensus 68 FWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEYY--FRnE---vfHCmDvLtfL~gGDLYNG--G 140 (590)
T PF03410_consen 68 FWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEYY--FRNE---VFHCMDVLTFLGGGDLYNG--G 140 (590)
T ss_pred hhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhhh--hhhh---HHHHHHHHHHhcCCcccCC--c
Confidence 888777654 444444444444433 2444333333222222221 1111 2233334444 2222221 3
Q ss_pred ChHhhcccCH--HHHHHHHHhhcCCCCeEEEEEcCCHHHHHHHHHhhcCCCCCCCC
Q 015795 234 PESAINRLNS--TLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP 287 (400)
Q Consensus 234 ~~~~l~~it~--~~l~~f~~~~~~~~~~~l~vvGv~~~~l~~lv~~~~~~l~~~~~ 287 (400)
-...+++++. +-|.+-.++ ....|.++.+--++ +.+..++++.||.||.-+.
T Consensus 141 Ri~ML~~l~~i~~mL~~RM~~-I~GpniVIFVk~l~-~~~l~lL~~TFGtLP~cP~ 194 (590)
T PF03410_consen 141 RIDMLNNLNDIRNMLSNRMHR-IIGPNIVIFVKELN-PNILSLLSNTFGTLPSCPL 194 (590)
T ss_pred hHHHHhhhHHHHHHHHHHHHh-hcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 3444554431 223332222 24456555554477 4578999999999997653
No 23
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0014 Score=65.37 Aligned_cols=269 Identities=13% Similarity=0.133 Sum_probs=164.6
Q ss_pred EeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHH------hccCCCC----ChHHHHHHHHHcCCeeEEEe-----cc
Q 015795 93 ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMA------FRSTRNR----SHLRIVREVEAIGGNVQASA-----SR 157 (400)
Q Consensus 93 ~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~------~~gt~~~----s~~~l~~~l~~~g~~~~~~~-----~~ 157 (400)
.+.+...+.+..+++...+.-. ..+.+ .+...++ ..|+-+- +.+++.+.+....++.+..+ -+
T Consensus 556 ~h~ps~Fvel~fl~dss~i~~s-l~pYl-~~f~~l~~~~pa~ldgtiptp~~~s~~~v~~~~~s~~id~si~~g~~G~~~ 633 (1022)
T KOG0961|consen 556 HHCPSKFVELFFLLDSSNISIS-LRPYL-FLFTDLLFESPAMLDGTIPTPVLTSADDVAKHFTSDLIDHSIQVGVSGLYD 633 (1022)
T ss_pred ccCchHHHhHhhhhccccCchh-hhhHH-HHHHHHHhcCHHHhcCCCCcchhhhHHHHHHHHHhhhhhhhhcccccccch
Confidence 3445557777777777666532 22322 2233332 3465542 45566655544333222222 24
Q ss_pred ceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCC--CCCC
Q 015795 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANP--LLAP 234 (400)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~--~~~~ 234 (400)
+-+.+.+++..++-+..++.+..++....||++.+....++++.++..++.|....+.......+| .+.+... .+-.
T Consensus 634 ~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~L~~ 713 (1022)
T KOG0961|consen 634 RLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDELVL 713 (1022)
T ss_pred hheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999 6554432 1112
Q ss_pred hHhhcccCH----------HHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHh---hcCCCCCCCCCCCCC--------
Q 015795 235 ESAINRLNS----------TLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP---LLSDLPSIHPREEPK-------- 292 (400)
Q Consensus 235 ~~~l~~it~----------~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~---~~~~l~~~~~~~~~~-------- 292 (400)
++-++.|.. +.++...+-....+.+.+.++| ++. +-+-... .+++..-+.+.....
T Consensus 714 Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~k--id~~~~~Wn~l~~~~~~~nP~~~f~~tf~~~~~ 791 (1022)
T KOG0961|consen 714 EKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDK--IDPKMLSWNWLQADPRFGNPGHQFSATFEAGEN 791 (1022)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhc--CCccccCchhhhcCcccCCchhhcccccccCcc
Confidence 233333321 2233333222355778899999 542 2221111 111111011111000
Q ss_pred -C-CCCCC--ceEEecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccc
Q 015795 293 -S-VYTGG--DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDG 368 (400)
Q Consensus 293 -~-~~~~~--~~~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~ 368 (400)
+ ....+ ...+.. ++.+.+.++...+....| .+++.+...++.++|+- .+|
T Consensus 792 ~s~e~gsssk~~~I~~-p~sESs~l~~sip~~~~w-~dpel~~~~l~~~YL~~------------------------~eG 845 (1022)
T KOG0961|consen 792 VSLELGSSSKELLIGV-PGSESSFLYQSIPLDANW-NDPELIPAMLFGQYLSQ------------------------CEG 845 (1022)
T ss_pred cceeccCCcceeEecC-CCccccceeeeccccccc-CCcchhHHHHHHHHHHh------------------------ccc
Confidence 1 11111 222222 233566666666666665 88999999999999985 244
Q ss_pred hhhHHHHhhcCeeEEEEeeeccce
Q 015795 369 SFYLHLRFMRNSCIFIFSFQGLHL 392 (400)
Q Consensus 369 ~L~~~iRe~~g~~Ysv~s~~~~~~ 392 (400)
.||+.||- -|+||+..-+..+..
T Consensus 846 PfW~~IRG-~GLAYGanm~~~~d~ 868 (1022)
T KOG0961|consen 846 PFWRAIRG-DGLAYGANMFVKPDR 868 (1022)
T ss_pred chhhhhcc-cchhccceeEEeccC
Confidence 89999998 899999877665543
No 24
>PHA03081 putative metalloprotease; Provisional
Probab=97.50 E-value=0.0032 Score=60.28 Aligned_cols=184 Identities=18% Similarity=0.255 Sum_probs=104.9
Q ss_pred EEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEeccceEE
Q 015795 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (400)
Q Consensus 82 ~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (400)
..|+||+||...+.-...+++++. +.|.-.+-.+..|++|++||++- .++...+ ..++++.+.++.
T Consensus 2 i~~~ngvr~f~~~~m~kdiy~gi~-~fgfe~di~~~lg~ahllehili----~fd~~~f---------~anast~r~yms 67 (595)
T PHA03081 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI----SFDSSKF---------VANASTARSYMS 67 (595)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee----ecchHHh---------cccchhhhhhHh
Confidence 478999999998877778888875 45655666678899999999974 2222221 235666777777
Q ss_pred EEEEecCCCH-HHHHHHHHHhhcCCCCCHHHHHHH-HHHHHHHHHhhc--CCHHHHHHHHHHHHhc--CCCCCCCCCCCh
Q 015795 162 YSFDALKTYV-PEMVELLIDCVRNPVFLDWEVNEQ-LTKVKSEISEVS--NNPQSLLLEAIHSAGY--SGALANPLLAPE 235 (400)
Q Consensus 162 ~~~~~~~~~l-~~~l~ll~~~l~~p~f~~~~~~~~-k~~~~~~l~~~~--~~p~~~~~~~l~~~~~--~~p~~~~~~~~~ 235 (400)
|-+.+....- .+++.-+...+..+.--.+.|... .+.-..|+++.. .|-. ..-+.-+.| ++-+-+- |-.
T Consensus 68 fwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYYFRnEv---fHCmDvLTfL~gGDLYNG--GRi 142 (595)
T PHA03081 68 FWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYYFRNEV---FHCMDVLTFLGGGDLYNG--GRI 142 (595)
T ss_pred HhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhhhhhhh---HHHHHHHHHhcCCcccCC--chH
Confidence 7766665432 566666666666554333334332 122333333211 1212 223333444 2222221 334
Q ss_pred HhhcccCHHHHHHHHHhh---cCCCCeEEEEEcCCHHHHHHHHHhhcCCCCCCCC
Q 015795 236 SAINRLNSTLLEEFVAEN---YTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP 287 (400)
Q Consensus 236 ~~l~~it~~~l~~f~~~~---~~~~~~~l~vvGv~~~~l~~lv~~~~~~l~~~~~ 287 (400)
..|++++ ++++...+. ....|.++.+--.+ +.+..++++.||.||.-+.
T Consensus 143 ~ML~~l~--~i~~~L~~RM~~I~GpniVIFVk~ln-~~~l~lL~~TFGtLP~~P~ 194 (595)
T PHA03081 143 DMLDNLN--DVRDMLSNRMHRISGPNIVIFVKELN-PNTLSLLNNTFGTLPSCPE 194 (595)
T ss_pred HHHhhhH--HHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 5555543 333333322 34456555554477 4578999999999997653
No 25
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.017 Score=54.20 Aligned_cols=176 Identities=11% Similarity=0.113 Sum_probs=119.2
Q ss_pred CcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHH-HH-----hccCCCCChHHHHHHHHHc-CC-----eeEEE
Q 015795 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLER-MA-----FRSTRNRSHLRIVREVEAI-GG-----NVQAS 154 (400)
Q Consensus 87 G~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~-l~-----~~gt~~~s~~~l~~~l~~~-g~-----~~~~~ 154 (400)
|-.|-..+.+.|..++.+.+.+-+-..++ + ++.+++. ++ +.|++......|.+.+... ++ --.++
T Consensus 258 gsEvR~rdd~lP~a~~AiAVEG~~w~~pD--~-~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt~Y 334 (467)
T KOG0960|consen 258 GSEVRVRDDDLPLAHIAIAVEGVSWAHPD--Y-FALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNTSY 334 (467)
T ss_pred CceeeecCCCCchhheeeeEecCCcCCcc--H-HHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhccc
Confidence 66677788888999999999887766653 3 4444433 33 2366666666666655432 22 11223
Q ss_pred eccceEEEEEEe-cCCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCC
Q 015795 155 ASREQMGYSFDA-LKTYVPEMVELLIDCVRN--PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANP 230 (400)
Q Consensus 155 ~~~~~~~~~~~~-~~~~l~~~l~ll~~~l~~--p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~ 230 (400)
.+..-.++.+-+ ....++.++..+...... ...++.|++++|.+++..+-...+.-...+.+.-.++++ +.....+
T Consensus 335 kDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri~l~ 414 (467)
T KOG0960|consen 335 KDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRIPLA 414 (467)
T ss_pred ccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcCChH
Confidence 333445666666 555666666555444332 368999999999999999987766655567788888886 4432211
Q ss_pred CCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CC
Q 015795 231 LLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (400)
Q Consensus 231 ~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~ 267 (400)
.-.+.|++|+.++++++..+++-.....++.+| +.
T Consensus 415 --El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 415 --ELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred --HHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 234679999999999999999988888999999 54
No 26
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.1 Score=49.31 Aligned_cols=162 Identities=17% Similarity=0.086 Sum_probs=109.1
Q ss_pred EEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCCh--------HHH-------HHHHHHcCCeeEEEeccceEEEE
Q 015795 99 VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH--------LRI-------VREVEAIGGNVQASASREQMGYS 163 (400)
Q Consensus 99 ~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~--------~~l-------~~~l~~~g~~~~~~~~~~~~~~~ 163 (400)
...+.+.+.+-+..++ +.-....+. |+..|-+.+|. ..+ -.+++...+.-..+.+..-+++.
T Consensus 264 ltHv~lg~Eg~~~~de--D~v~~avLq-~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfgi~ 340 (472)
T KOG2067|consen 264 LTHVVLGFEGCSWNDE--DFVALAVLQ-MLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIY 340 (472)
T ss_pred eeeeeEeeccCCCCCh--hHHHHHHHH-HHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeEEe
Confidence 6667777776666655 333333344 44344444441 111 13455566666677777789999
Q ss_pred EEecCCCHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCCCCCChHhhccc
Q 015795 164 FDALKTYVPEMVELLIDCVRNP--VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRL 241 (400)
Q Consensus 164 ~~~~~~~l~~~l~ll~~~l~~p--~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~i 241 (400)
++++++...++++++..-+.+- ..+++|++|+|.+++..+-+..++-.-.+.+.-++.+-...+ .+.-.-.+.|+++
T Consensus 341 ~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~r-k~p~e~~~~Ie~l 419 (472)
T KOG2067|consen 341 ASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGER-KPPDEFIKKIEQL 419 (472)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCc-CCHHHHHHHHHhc
Confidence 9999999999999998777643 489999999999999999977766666677777777641111 2211234778999
Q ss_pred CHHHHHHHHHhhcCCCCeEEEEEc
Q 015795 242 NSTLLEEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 242 t~~~l~~f~~~~~~~~~~~l~vvG 265 (400)
+.+|+.++..+.++.+ .+++..|
T Consensus 420 t~~DI~rva~kvlt~~-p~va~~G 442 (472)
T KOG2067|consen 420 TPSDISRVASKVLTGK-PSVAAFG 442 (472)
T ss_pred CHHHHHHHHHHHhcCC-ceeccCC
Confidence 9999999999988543 3444445
No 27
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=95.98 E-value=0.32 Score=48.09 Aligned_cols=127 Identities=10% Similarity=0.039 Sum_probs=86.2
Q ss_pred HHHHHH-HHcCCeeEEEecc------ceEEEEEEecCCCHHHHHHHHHHhh----cCC--CCCHHHHHHHHHHHHHHHHh
Q 015795 139 RIVREV-EAIGGNVQASASR------EQMGYSFDALKTYVPEMVELLIDCV----RNP--VFLDWEVNEQLTKVKSEISE 205 (400)
Q Consensus 139 ~l~~~l-~~~g~~~~~~~~~------~~~~~~~~~~~~~l~~~l~ll~~~l----~~p--~f~~~~~~~~k~~~~~~l~~ 205 (400)
.+...+ +..|..++++... ....+...+..++.+...+.+.+.+ ... .+++++++..++.+...+-.
T Consensus 291 rLf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~ 370 (438)
T COG0612 291 RLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLL 370 (438)
T ss_pred HHHHHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhh
Confidence 333334 4567777666321 2344555555444444444333333 333 28999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CC
Q 015795 206 VSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (400)
Q Consensus 206 ~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~ 267 (400)
..++|...+........+ ...... ..-.+.|+.++.+++.++.++++.+.+++++++| ..
T Consensus 371 ~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~ 432 (438)
T COG0612 371 SLDSPSSIAELLGQYLLLGGSLITL--EELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEK 432 (438)
T ss_pred ccCCHHHHHHHHHHHHHhcCCccCH--HHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcccc
Confidence 899999888777666665 332221 1345789999999999999999999999999999 54
No 28
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=93.53 E-value=2 Score=45.00 Aligned_cols=180 Identities=11% Similarity=0.127 Sum_probs=101.1
Q ss_pred HHHHHHHcCCeeEEEeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 015795 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFL--DWEVNEQLTKVKSEISEVSNNPQSLLLEA 217 (400)
Q Consensus 140 l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~--~~~~~~~k~~~~~~l~~~~~~p~~~~~~~ 217 (400)
+...++..|+.++.....+...+.+.++.+-+..+++.+...+..|.-. ... .+ ...|.....+.
T Consensus 480 l~~~~~~~g~~~~~~~~~~~w~l~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~------------~~~~~~i~ir~ 546 (696)
T TIGR02110 480 LLADARHAGVNGSWQATGASWQLLLNGPRSPMRAVFSVALALLALAAPMLAQPA-AN------------RASAPSIPIRQ 546 (696)
T ss_pred HHHHHHhcCceeEEEEcCCeEEEEcCCCchhHHHHHHHHHHHHhCCCccccccc-cc------------CCCCccchHHH
Confidence 4445555699999999999999999999999999999999999888331 110 00 01122233333
Q ss_pred HHHHhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEcCCHHHHHHHHHhhcCCCCCCCCCCC--CCCCC
Q 015795 218 IHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREE--PKSVY 295 (400)
Q Consensus 218 l~~~~~~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvGv~~~~l~~lv~~~~~~l~~~~~~~~--~~~~~ 295 (400)
+.+.+=+. +..+. ... .+ .|...... |.+...+...+ ..+|....... +.+..
T Consensus 547 ll~~lp~~-~~~~~-~~~--------~~--~~~~~~~~---------~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~ 601 (696)
T TIGR02110 547 LLAALPER-LLKSL-PAQ--------QD--DWLAARWG---------AATQLAQRVAL----QLSPGTADLARPTPLPAR 601 (696)
T ss_pred HHHhchHh-hccCc-ccc--------cc--chhhhhcc---------cchhHHHHHHH----HhCCCCCccCCCCCCCcc
Confidence 33332100 11110 000 00 01111111 11122222222 22332222211 11222
Q ss_pred CCCce-EEecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHH
Q 015795 296 TGGDY-RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHL 374 (400)
Q Consensus 296 ~~~~~-~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~i 374 (400)
.+... .+..+. ..+.+.+-.+.|. .+..+.++..+|..++.+ .+|++|
T Consensus 602 ~~~~~~~~~~~~--~e~alllf~p~~~--~~~~~~aa~rlla~l~~~---------------------------~f~qrl 650 (696)
T TIGR02110 602 LGRGWVPLACDG--GEQALLLFCPLPT--ADVASEAAWRLLAQLLEP---------------------------PFFQRL 650 (696)
T ss_pred cccceEeccCCC--CCcEEEEEecCCC--CCHHHHHHHHHHHHHhch---------------------------hHHHHH
Confidence 22232 222233 4555666678887 677889999999999986 899999
Q ss_pred HhhcCeeEEEEeee
Q 015795 375 RFMRNSCIFIFSFQ 388 (400)
Q Consensus 375 Re~~g~~Ysv~s~~ 388 (400)
|.+.++.|.|++.+
T Consensus 651 Rve~qlGY~v~~~~ 664 (696)
T TIGR02110 651 RVELQLGYVVFCRY 664 (696)
T ss_pred HHhhccceEEEEee
Confidence 99999999999965
No 29
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=88.33 E-value=1.3 Score=37.06 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=65.3
Q ss_pred CcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHH-HcCCeeEEEec----c--ce
Q 015795 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGGNVQASAS----R--EQ 159 (400)
Q Consensus 87 G~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~~~~~~~~----~--~~ 159 (400)
+..+.....+.+...+.+.+.+...... .......++..++..+. ...+.+.+. ..|...++.+. . ..
T Consensus 67 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~----~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~ 141 (184)
T PF05193_consen 67 GKEIVIPSKDESQSIVSIAFPGPPIKDS-KDYFALNLLSSLLGNGM----SSRLFQELREKQGLAYSVSASNSSYRDSGL 141 (184)
T ss_dssp EEEEEEEESSSSSEEEEEEEEEEETGTS-TTHHHHHHHHHHHHCST----TSHHHHHHHTTTTSESEEEEEEEEESSEEE
T ss_pred cccccccccccccccccccccccccccc-chhhHHHHHHHHHhcCc----cchhHHHHHhccccceEEEeeeeccccceE
Confidence 3445555444455555566665555222 35567778888886552 334555565 44433333332 2 34
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHH
Q 015795 160 MGYSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKV 199 (400)
Q Consensus 160 ~~~~~~~~~~~l~~~l~ll~~~l~~---p~f~~~~~~~~k~~~ 199 (400)
+.+.+.+.+++++++++.+.+.+.. -.|++++|+++|+++
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 142 FSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 6777888888888888777776653 349999999998864
No 30
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=45.45 E-value=60 Score=18.75 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 015795 173 EMVELLIDCVRNPVFLDWEVNEQLTKVK 200 (400)
Q Consensus 173 ~~l~ll~~~l~~p~f~~~~~~~~k~~~~ 200 (400)
.-++.|.+.+.+-.+++++|++.|++++
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4577788888888999999999998775
No 31
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=28.96 E-value=58 Score=27.56 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=32.1
Q ss_pred HhhcccCHHHHHHHHHhhc-CCCCeEEEEEc-CCHHHHHHHHHh
Q 015795 236 SAINRLNSTLLEEFVAENY-TGPRMVLAASG-VEHDQLVSVAEP 277 (400)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~-~~~~~~l~vvG-v~~~~l~~lv~~ 277 (400)
=.+++.+.+++++..+..- .+.+..+.++| ++.+.+.++.+.
T Consensus 104 I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 104 IMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp EEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred EEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 3467888999999888543 35569999999 999998887753
No 32
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=28.82 E-value=1.7e+02 Score=18.93 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=39.0
Q ss_pred hHHHHHHHHHcCCeeEEEeccceEEEEEEecCCCHHHHHHHHHHhh
Q 015795 137 HLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 182 (400)
Q Consensus 137 ~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l 182 (400)
...+...++..++.+.-..-.+...+.+..+.++.+...+.|.+.-
T Consensus 8 ~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t 53 (56)
T PF09186_consen 8 YGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLT 53 (56)
T ss_dssp HHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHc
Confidence 3568888999999887777777799999999999999999888753
No 33
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=27.44 E-value=1.8e+02 Score=19.37 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCeeEEEec-cceEEEEEEecCCCHHHHHHHHHHhhc
Q 015795 138 LRIVREVEAIGGNVQASAS-REQMGYSFDALKTYVPEMVELLIDCVR 183 (400)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ll~~~l~ 183 (400)
.++-+.+...|..+..-.. .....+++....++.+.+++.|++.+.
T Consensus 19 ~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 19 ATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 3466667788887765532 234778888888899999999888765
No 34
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=26.53 E-value=1.8e+02 Score=27.35 Aligned_cols=67 Identities=21% Similarity=0.146 Sum_probs=47.3
Q ss_pred HhccCCCCChHHHHHHHHHcCCeeEEEeccceEEE-EEEe--cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 015795 128 AFRSTRNRSHLRIVREVEAIGGNVQASASREQMGY-SFDA--LKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199 (400)
Q Consensus 128 ~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~-~~~~--~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~ 199 (400)
.+.|+-..++.++.+.++..|+.+..++++....+ .+.. .+.++.++-++ -=|.+++++|.+....+
T Consensus 239 v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~-----gi~ii~e~~f~~ll~~~ 308 (313)
T PRK06063 239 ALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQL-----GVPVLDEAAFLELLRAV 308 (313)
T ss_pred EEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHc-----CCccccHHHHHHHHHhh
Confidence 56676668999999999999999999998754333 2222 22466666663 45678888887766544
No 35
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=26.46 E-value=94 Score=26.89 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=29.3
Q ss_pred cccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHH
Q 015795 239 NRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 275 (400)
Q Consensus 239 ~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv 275 (400)
.=|+.+++.++.+. .|.++.++++| .-++++.+.+
T Consensus 131 gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~A 166 (191)
T PRK05986 131 GYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAA 166 (191)
T ss_pred CCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhC
Confidence 34778999999975 79999999999 8778888765
No 36
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.36 E-value=2e+02 Score=19.07 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCeeEEEec-cceEEEEEEecCCCHHHHHHHHHHhhcC
Q 015795 139 RIVREVEAIGGNVQASAS-REQMGYSFDALKTYVPEMVELLIDCVRN 184 (400)
Q Consensus 139 ~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ll~~~l~~ 184 (400)
++-+.+...|..+..... .....+++....++.+.+++.+++.+.+
T Consensus 20 ~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 20 RATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 455667777887765542 2346778888889999999999887753
No 37
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=24.12 E-value=2.1e+02 Score=18.59 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCeeEEEeccceEEEEEEecCCCHHHHHHHHHHhh
Q 015795 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 182 (400)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l 182 (400)
.++-+.+...+..+...... ...+++....++.+.+++.|+..+
T Consensus 18 ~~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 18 AKMFEALAEAGINIEMISTS-EIKISCLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHCCCcEEEEEcc-CceEEEEEeHHHHHHHHHHHHHHh
Confidence 34666778888888777643 466778888888888888888765
No 38
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.87 E-value=2.3e+02 Score=18.45 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCeeEEEeccceEEEEEEecCCCHHHHHHHHHHhh
Q 015795 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 182 (400)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l 182 (400)
.++-+.+...+..+...... ...+++....++.+.+.+.|++.+
T Consensus 18 ~~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 18 AKMFKALAEAGINIEMISTS-EIKISCLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHCCCCEEEEEcc-CCeEEEEEeHHHHHHHHHHHHHHh
Confidence 35666778888888777643 366778888888888888888766
No 39
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=22.44 E-value=1.3e+02 Score=25.57 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=28.5
Q ss_pred ccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHH
Q 015795 240 RLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 275 (400)
Q Consensus 240 ~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv 275 (400)
=|+.+++.++.+. .|.++.++++| --++++.+++
T Consensus 114 li~~~~v~~lL~~--rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 114 YLDVEEVVEALQE--RPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred CcCHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhC
Confidence 4778889998865 79999999999 7778888765
No 40
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.08 E-value=2.5e+02 Score=18.57 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCeeEEEec-cceEEEEEEecCCCHHHHHHHHHHhh
Q 015795 139 RIVREVEAIGGNVQASAS-REQMGYSFDALKTYVPEMVELLIDCV 182 (400)
Q Consensus 139 ~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ll~~~l 182 (400)
++-+.+...|..+..-.. .....+++....++.+.+++.|++.+
T Consensus 20 ~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh~~~ 64 (66)
T cd04924 20 RVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEF 64 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHh
Confidence 455667778887765542 13367788888899999999988876
No 41
>COG3372 Predicted nuclease of restriction endonuclease-like fold [General function prediction only]
Probab=21.23 E-value=7.6e+02 Score=23.97 Aligned_cols=24 Identities=8% Similarity=0.297 Sum_probs=14.0
Q ss_pred hcCCCCeEEEEEcCCHHHHHHHHHh
Q 015795 253 NYTGPRMVLAASGVEHDQLVSVAEP 277 (400)
Q Consensus 253 ~~~~~~~~l~vvGv~~~~l~~lv~~ 277 (400)
.|++-.+++-+.| +...+...+..
T Consensus 159 lf~A~~l~v~v~~-~~k~~~r~IK~ 182 (396)
T COG3372 159 LFKAVRLTVSVSD-NWKEIIRAIKR 182 (396)
T ss_pred HHhheEEEEEecc-hHHHHHHHHHH
Confidence 3566677777666 44455555543
No 42
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=21.17 E-value=1.4e+02 Score=25.54 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=28.8
Q ss_pred ccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHH
Q 015795 240 RLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 275 (400)
Q Consensus 240 ~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv 275 (400)
=|+.+++.++.+. .|.++.++++| --++++.+.+
T Consensus 132 li~~eeVl~~L~~--rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 132 LIPETEVLEFLEK--RPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CccHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhC
Confidence 4778999999886 69999999999 8778888765
No 43
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.06 E-value=2.6e+02 Score=18.56 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCeeEEEec-cceEEEEEEecCCCHHHHHHHHHHhhc
Q 015795 138 LRIVREVEAIGGNVQASAS-REQMGYSFDALKTYVPEMVELLIDCVR 183 (400)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ll~~~l~ 183 (400)
.++-+.++..|.++..-.. .....+++....++.+.+++.|++.+.
T Consensus 19 ~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~~a~~~lh~~~~ 65 (66)
T cd04919 19 GRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIHTNLL 65 (66)
T ss_pred HHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHh
Confidence 3566667788887754431 234677788888889999999988764
No 44
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=20.13 E-value=2.3e+02 Score=19.33 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=27.9
Q ss_pred HHHHHHHcCCeeEEEeccceEEEEEEecCCCHHHHHHHHHH
Q 015795 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180 (400)
Q Consensus 140 l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~ 180 (400)
+.+.|...|.++-.-. .....++-...++++++++.|.+
T Consensus 27 i~~~La~~~I~i~~is--S~~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 27 IFSALAEAGINIFMIS--SEISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp HHHHHHHTTS-ECEEE--ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEE--EeeeEEEEEeHHHHHHHHHHhcC
Confidence 3445677788776666 45567777888999999998864
No 45
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=20.06 E-value=1.9e+02 Score=24.57 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=23.7
Q ss_pred cccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHH
Q 015795 239 NRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 275 (400)
Q Consensus 239 ~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv 275 (400)
.=|+.+++.++.+. .|..+.++++| --++++.+.+
T Consensus 112 gll~~~~v~~~l~~--rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 112 GLLSEEEVLDLLEN--RPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp TSS-HHHHHHHHHT--S-TT-EEEEE-SS--HHHHHH-
T ss_pred CCccHHHHHHHHHc--CCCCeEEEEECCCCCHHHHHhC
Confidence 34788999999985 68999999999 7788888766
Done!