Query 015795
Match_columns 400
No_of_seqs 306 out of 1828
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 18:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eoq_A Putative zinc protease; 100.0 1.4E-46 4.7E-51 366.4 34.3 285 79-391 2-290 (406)
2 3hdi_A Processing protease; CA 100.0 4.4E-46 1.5E-50 364.4 33.5 285 79-391 2-290 (421)
3 1hr6_A Alpha-MPP, mitochondria 100.0 1.6E-44 5.5E-49 358.9 34.3 289 77-390 4-309 (475)
4 1hr6_B Beta-MPP, mitochondrial 100.0 3.8E-44 1.3E-48 352.9 34.7 290 75-390 3-310 (443)
5 3ami_A Zinc peptidase; alpha/b 100.0 2.8E-44 9.7E-49 354.2 33.0 288 77-389 5-302 (445)
6 1pp9_A Ubiquinol-cytochrome C 100.0 1.3E-43 4.5E-48 349.5 33.7 286 77-389 12-312 (446)
7 3gwb_A Peptidase M16 inactive 100.0 3.6E-43 1.2E-47 344.8 32.3 288 76-391 11-306 (434)
8 3amj_B Zinc peptidase inactive 100.0 3.7E-42 1.2E-46 336.7 34.4 286 77-391 2-299 (424)
9 1pp9_B Ubiquinol-cytochrome C 100.0 1.2E-41 4.2E-46 334.4 36.3 289 74-390 19-315 (439)
10 3cx5_A Cytochrome B-C1 complex 100.0 5.1E-39 1.7E-43 314.8 28.7 277 80-390 2-295 (431)
11 1q2l_A Protease III; hydrolase 100.0 7.1E-39 2.4E-43 343.3 31.6 288 75-388 17-317 (939)
12 3d3y_A Uncharacterized protein 100.0 4E-38 1.4E-42 307.8 29.5 280 82-390 6-310 (425)
13 3go9_A Insulinase family prote 100.0 1.1E-37 3.7E-42 310.7 24.6 280 77-392 24-327 (492)
14 3cww_A Insulysin, insulin-degr 100.0 2.6E-36 9E-41 325.0 32.5 291 74-390 30-336 (990)
15 3s5m_A Falcilysin; M16 metallo 100.0 5E-36 1.7E-40 321.5 23.8 294 73-392 81-453 (1193)
16 3cx5_B Cytochrome B-C1 complex 100.0 5.5E-35 1.9E-39 278.9 26.9 242 88-341 1-246 (352)
17 2fge_A Atprep2;, zinc metallop 100.0 2.3E-35 7.8E-40 317.8 22.5 281 77-387 36-350 (995)
18 2fge_A Atprep2;, zinc metallop 99.9 4E-27 1.4E-31 253.6 21.7 287 77-399 552-872 (995)
19 1q2l_A Protease III; hydrolase 99.9 3.1E-26 1.1E-30 245.4 21.5 274 79-389 500-783 (939)
20 3cww_A Insulysin, insulin-degr 99.9 7.3E-24 2.5E-28 228.1 22.4 276 79-390 519-810 (990)
21 3s5m_A Falcilysin; M16 metallo 99.9 2.7E-23 9.1E-28 223.2 14.7 280 85-399 724-1066(1193)
22 3ih6_A Putative zinc protease; 98.8 3.6E-09 1.2E-13 91.4 5.6 57 309-391 23-79 (197)
23 3ih6_A Putative zinc protease; 98.5 1.8E-06 6.1E-11 74.2 13.9 161 97-265 22-192 (197)
24 3hdi_A Processing protease; CA 98.2 8E-06 2.7E-10 78.7 12.1 165 94-267 229-405 (421)
25 1hr6_B Beta-MPP, mitochondrial 98.2 9.4E-05 3.2E-09 71.6 19.7 168 94-265 241-426 (443)
26 3cx5_A Cytochrome B-C1 complex 98.2 4.1E-05 1.4E-09 73.8 16.7 174 89-267 222-414 (431)
27 3eoq_A Putative zinc protease; 98.2 1.1E-05 3.9E-10 77.4 12.6 163 94-265 229-402 (406)
28 3amj_B Zinc peptidase inactive 98.1 0.00013 4.3E-09 70.2 17.5 164 96-265 239-412 (424)
29 1pp9_A Ubiquinol-cytochrome C 98.1 8.6E-05 3E-09 72.1 16.2 167 94-265 245-426 (446)
30 1hr6_A Alpha-MPP, mitochondria 98.0 0.00025 8.6E-09 69.4 17.1 167 96-266 240-437 (475)
31 3gwb_A Peptidase M16 inactive 98.0 2E-05 7E-10 76.1 9.1 163 96-265 246-419 (434)
32 1pp9_B Ubiquinol-cytochrome C 97.8 0.00056 1.9E-08 65.9 17.2 165 96-265 249-428 (439)
33 3ami_A Zinc peptidase; alpha/b 97.7 0.00045 1.5E-08 66.9 14.5 141 120-265 267-420 (445)
34 3d3y_A Uncharacterized protein 97.5 0.00048 1.7E-08 66.0 11.1 167 90-265 245-420 (425)
35 3go9_A Insulinase family prote 97.2 0.0052 1.8E-07 60.4 14.3 164 93-265 260-446 (492)
36 3cx5_B Cytochrome B-C1 complex 49.0 8 0.00027 35.1 2.4 75 160-267 269-344 (352)
37 2k6g_A Replication factor C su 23.4 1.1E+02 0.0038 22.6 4.6 57 134-196 46-105 (109)
38 1use_A VAsp, vasodilator-stimu 21.8 1.5E+02 0.005 18.1 4.0 20 187-206 4-23 (45)
39 3lh2_S 4E10_1VI7A_S0_002_N (T8 20.6 2E+02 0.0068 19.2 5.7 46 138-183 20-65 (76)
40 1l7b_A DNA ligase; BRCT, autos 20.6 85 0.0029 22.4 3.3 63 129-196 15-78 (92)
No 1
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-46 Score=366.39 Aligned_cols=285 Identities=18% Similarity=0.231 Sum_probs=258.6
Q ss_pred eEEEEcCCCcEEEEEeCCC-CEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEecc
Q 015795 79 TKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (400)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~~-~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (400)
++.++|+||++|++.+.+. +.+++.+++++|+++|++...|++|+++||+|.||.+++..++.+.++.+|+.++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 5789999999999876655 799999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 015795 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES 236 (400)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~ 236 (400)
+++.|.+++++++++.+|+++.+++ +|.|++++|+++|..+.++++...++|...+.+.+++.+| +|||+++..|+.+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCceEEecCCCCCceEEE
Q 015795 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADSGDQLTHFV 314 (400)
Q Consensus 237 ~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~qs~v~ 314 (400)
+|++++.++|++||+++|.|+||+|+++| +++++++++++++|+.|+..+.+.... ....++...+..+ ..+|+++.
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~~ 239 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYE-KARALYLV 239 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECT-TCSSEEEE
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecC-CccceEEE
Confidence 99999999999999999999999999999 999999999999999998654332211 1222333333332 22799999
Q ss_pred EEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEeeeccc
Q 015795 315 LAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLH 391 (400)
Q Consensus 315 ~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~~~~ 391 (400)
++|+++. .+++|.+++.|++.+|||+++| +||++||| +|++|+++++....
T Consensus 240 ~~~~~~~--~~~~d~~~l~vl~~iLgg~~~s-----------------------rL~~~lre-~gl~y~~~s~~~~~ 290 (406)
T 3eoq_A 240 ALFPGVA--YQEEARFPGQVLAHLLGEEGSG-----------------------RLHFALVD-KGLAEVASFGLEEA 290 (406)
T ss_dssp EEEECCC--TTCTTHHHHHHHHHHHHCTTTS-----------------------HHHHHTTT-TTSEEEEEEEEEEC
T ss_pred EEecCCC--CCCchHHHHHHHHHHhCCCcch-----------------------HHHHHHHH-cCCeeEEEEEeccc
Confidence 9999987 6889999999999999999888 99999999 99999999987654
No 2
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=4.4e-46 Score=364.41 Aligned_cols=285 Identities=26% Similarity=0.426 Sum_probs=260.0
Q ss_pred eEEEEcCCCcEEEEEeCCC-CEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEecc
Q 015795 79 TKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (400)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~~-~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (400)
++.++|+||++|++.+.+. +.+++.+++++|+++|++...|++|+++||++.||.+++..++.+.++.+|+.++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 5789999999999776654 799999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 015795 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES 236 (400)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~ 236 (400)
+.+.|++++++++++.+|+++.+++.+|.|++++|+++|+.++++++...++|...+.+.+.+.+| +|||+++.+|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCC-CCCCCCCCceEEecCCCCCceEEE
Q 015795 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKSVYTGGDYRCQADSGDQLTHFV 314 (400)
Q Consensus 237 ~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~qs~v~ 314 (400)
+|++++.++|++||+++|.|+|++|+++| ++ ++++++++++|+.||....+.. ..+.+.+.......+. +|++|.
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~~v~ 238 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKET--EQAHLC 238 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCC--SEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCC--CceEEE
Confidence 99999999999999999999999999999 99 9999999999999987554322 2233333333333344 899999
Q ss_pred EEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEeeeccc
Q 015795 315 LAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLH 391 (400)
Q Consensus 315 ~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~~~~ 391 (400)
++|+++. .++++.+++.|++.+|||+.+| +||++|||++|++|+++++....
T Consensus 239 ~~~~~~~--~~~~d~~~l~vl~~iLgg~~~s-----------------------rL~~~lRe~~glay~~~s~~~~~ 290 (421)
T 3hdi_A 239 LGYPGLP--IGDKDVYALVLLNNVLGGSMSS-----------------------RLFQDIREKRGLCYSVFSYHSSF 290 (421)
T ss_dssp EEEECCC--TTCTTHHHHHHHHHHHTSSSSS-----------------------HHHHHHTTTTCCCSCEEEEEEEC
T ss_pred EEEecCC--CCCchHHHHHHHHHHhCCCccc-----------------------HHHHHHHHhcCCEEEEEEeeccc
Confidence 9999987 6889999999999999999888 99999999999999999977543
No 3
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=1.6e-44 Score=358.91 Aligned_cols=289 Identities=28% Similarity=0.432 Sum_probs=261.7
Q ss_pred CceEEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEec
Q 015795 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (400)
|.++.++|+||++|++.+.+.+.+++++++++|+++|++...|++|+++||+|.||.+++..++.+.++..|+.++++++
T Consensus 4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~ 83 (475)
T 1hr6_A 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS 83 (475)
T ss_dssp TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 67899999999999988887889999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 015795 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (400)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~ 235 (400)
.+.+.|.+++++++++.+|++|.+++.+|.|++++|+++|+.+++++++..++|...+.+.++..+| ++||+++.+|+.
T Consensus 84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999899999999999999999 999999999999
Q ss_pred HhhcccCHHHHHHHHHhhcCCCCeEEEEEcCCHHHHHHHHHhhcCCCCCCCCC-CCCCCCCCCCceEEecC----CCCCc
Q 015795 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQAD----SGDQL 310 (400)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~~~~~~~l~vvGv~~~~l~~lv~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~----~~~~q 310 (400)
+.|++++.++|++||+++|.|+||+++++|+++++++++++++|+.|+....+ ..+.+.+.++...+... .+.++
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999865433 11223444444444421 33489
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHHHHHcCCC-----------CCcccccccccccccccceeeeeccchhhHHHHhhcC
Q 015795 311 THFVLAFELPGGWHKDKDAMTLTVLQVMISNP-----------HDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRN 379 (400)
Q Consensus 311 s~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg-----------~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g 379 (400)
++|.++|++++ .++++.+++.||+.+|||+ +++ +||++||+++|
T Consensus 244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s-----------------------~L~~~lr~~~g 298 (475)
T 1hr6_A 244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYS-----------------------RLYTHVLNQYY 298 (475)
T ss_dssp EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTS-----------------------HHHHHTTTTCS
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCC-----------------------HHHHHHHHhcC
Confidence 99999999876 5888999999999999875 346 99999999999
Q ss_pred eeEEEEeeecc
Q 015795 380 SCIFIFSFQGL 390 (400)
Q Consensus 380 ~~Ysv~s~~~~ 390 (400)
++|+++++...
T Consensus 299 l~y~v~s~~~~ 309 (475)
T 1hr6_A 299 FVENCVAFNHS 309 (475)
T ss_dssp SEEEEEEEEEE
T ss_pred CeeEEEEeccc
Confidence 99999997754
No 4
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=3.8e-44 Score=352.87 Aligned_cols=290 Identities=27% Similarity=0.407 Sum_probs=260.1
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCC-EEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEE
Q 015795 75 EPGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQA 153 (400)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~~~~~-~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 153 (400)
..|+++.++|+||++|++.+++.+ .+++.+++++|++.|++...|++|+++||++.||++++..++.+.++.+|+.+++
T Consensus 3 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 3 QIPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNA 82 (443)
T ss_dssp --CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEE
Confidence 347889999999999998877766 9999999999999999899999999999999999999999999999999999999
Q ss_pred EeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCC
Q 015795 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLL 232 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~ 232 (400)
+++.+.+.|++++++++++.+|+++.+++.+|.|++++|+++|+.++++++...++|...+.+.+++.+| +|||+++..
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTIL 162 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSS
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999989
Q ss_pred CChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCC------CCCCCCCceEEecC
Q 015795 233 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP------KSVYTGGDYRCQAD 305 (400)
Q Consensus 233 ~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~ 305 (400)
|+.+.|++++.++|++||+++|.|+|++|+++| +++++++++++++|+.||....+... .+.+.++...+. .
T Consensus 163 g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 241 (443)
T 1hr6_B 163 GPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIK-E 241 (443)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEE-C
T ss_pred CCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEec-c
Confidence 999999999999999999999999999999999 99999999999999999865432211 222333333333 2
Q ss_pred CCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCC---------CCCcccccccccccccccceeeeeccchhhHHHHh
Q 015795 306 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISN---------PHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRF 376 (400)
Q Consensus 306 ~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLgg---------g~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe 376 (400)
.+.+|++|.++|++++ +++++.+++.|++.+||+ +++| +|+++|||
T Consensus 242 ~~~~~~~v~~~~~~~~--~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s-----------------------~L~~~lre 296 (443)
T 1hr6_B 242 NTLPTTHIAIALEGVS--WSAPDYFVALATQAIVGNWDRAIGTGTNSPS-----------------------PLAVAASQ 296 (443)
T ss_dssp TTCSEEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEETTTBCSSSSCC-----------------------HHHHHHHS
T ss_pred CCccceEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccCCCCCCccc-----------------------HHHHHHHH
Confidence 2348999999999986 688999999999999986 4556 99999999
Q ss_pred hcCeeEEEEeeecc
Q 015795 377 MRNSCIFIFSFQGL 390 (400)
Q Consensus 377 ~~g~~Ysv~s~~~~ 390 (400)
++|++|+++++...
T Consensus 297 ~~glay~~~~~~~~ 310 (443)
T 1hr6_B 297 NGSLANSYMSFSTS 310 (443)
T ss_dssp TTCSCSEEEEEEEE
T ss_pred HcCCeEEEEeeecC
Confidence 99999999987654
No 5
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=2.8e-44 Score=354.16 Aligned_cols=288 Identities=20% Similarity=0.292 Sum_probs=258.0
Q ss_pred CceEEEEcCCCcEEEEEeC-CCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEe
Q 015795 77 GKTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~-~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (400)
++++.++|+||++|++.+. ..+.+.+.+++++|+..|++...|++|+++||+|+||++++..++.+.++.+|+.+++++
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 5789999999999997655 457999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHhc-CCCCCCCCCC
Q 015795 156 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS-EVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~-~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~ 233 (400)
+.+.+.|.+++++++++.+|+++.+++.+|.|++++|+++|+.+.++++ ...++|...+.+.+++.+| +|||+++.+|
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 164 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIG 164 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTC
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 6789999999999999999 9999999999
Q ss_pred ChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCC--C-CCCCCC-ceEEecCCCC
Q 015795 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--K-SVYTGG-DYRCQADSGD 308 (400)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~--~-~~~~~~-~~~~~~~~~~ 308 (400)
+.++|++++.++|++||+++|.|+||+|+++| +++++++++++++|+.||....+... . +...+. .+.+..+.
T Consensus 165 ~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 242 (445)
T 3ami_A 165 WMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPA-- 242 (445)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEEC--
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCC--
Confidence 99999999999999999999999999999999 99999999999999999865432211 1 222222 23333334
Q ss_pred CceEEEEEeecCCC--CCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEe
Q 015795 309 QLTHFVLAFELPGG--WHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFS 386 (400)
Q Consensus 309 ~qs~v~~~~~~~~~--~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s 386 (400)
.|++|.++|+++.. +.++++.+++.+++.+|||+.+| ||+++|||++|++|++++
T Consensus 243 ~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~s-----------------------rL~~~lre~~gl~y~v~~ 299 (445)
T 3ami_A 243 ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGA-----------------------RMTRQLVRGNKHAVSAGA 299 (445)
T ss_dssp SSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTC-----------------------HHHHHTTTTSCCEEEEEE
T ss_pred CccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcch-----------------------HHHHHHhhcCCcEEEEEe
Confidence 78999999998851 22378999999999999999888 999999999999999999
Q ss_pred eec
Q 015795 387 FQG 389 (400)
Q Consensus 387 ~~~ 389 (400)
+..
T Consensus 300 ~~~ 302 (445)
T 3ami_A 300 GYD 302 (445)
T ss_dssp ECC
T ss_pred ecc
Confidence 765
No 6
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1.3e-43 Score=349.50 Aligned_cols=286 Identities=28% Similarity=0.482 Sum_probs=258.1
Q ss_pred CceEEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEec
Q 015795 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (400)
+.++..+|+||++|++.+.+.+.+++.+++++|++.|++...|++|+++||+|.||.+++..++.+.++.+|+.++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~ 91 (446)
T 1pp9_A 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST 91 (446)
T ss_dssp CCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC
T ss_pred cCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 67889999999999988777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 015795 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (400)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~ 235 (400)
.+.+.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.+++.+| +|||+++..|+.
T Consensus 92 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 92 REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCC--C--CCCCCCCceEEecCCCCCc
Q 015795 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P--KSVYTGGDYRCQADSGDQL 310 (400)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~--~--~~~~~~~~~~~~~~~~~~q 310 (400)
++|++++.++|++||+++|.|+|++|+++| +++++++++++++|+.|+....+.. . .+.+.++.+.+.. .+.+|
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 250 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHRE-DGLPL 250 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEE-TTSSS
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEec-CCccc
Confidence 999999999999999999999999999999 9999999999999999986543321 1 2223333443322 22379
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHHHHHcCC---------CCCcccccccccccccccceeeeeccchhhHHHHhhcCee
Q 015795 311 THFVLAFELPGGWHKDKDAMTLTVLQVMISN---------PHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSC 381 (400)
Q Consensus 311 s~v~~~~~~~~~~~~~~d~~~l~vL~~lLgg---------g~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~ 381 (400)
++|.++|++++ ++++|.+++.|++.+||| +.+| |||++||+ +|++
T Consensus 251 ~~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~~~~~g~~~~s-----------------------rL~~~lr~-~gla 304 (446)
T 1pp9_A 251 AHVAIAVEGPG--WAHPDNVALQVANAIIGHYDCTYGGGAHLSS-----------------------PLASIAAT-NKLC 304 (446)
T ss_dssp EEEEEEEEECC--TTCTHHHHHHHHHHHHCEEETTCSCGGGCSS-----------------------HHHHHHHH-HTCC
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccCCCCCCCCC-----------------------HHHHHHHh-cCCe
Confidence 99999999987 688999999999999986 4567 99999996 6899
Q ss_pred EEEEeeec
Q 015795 382 IFIFSFQG 389 (400)
Q Consensus 382 Ysv~s~~~ 389 (400)
|+++++..
T Consensus 305 y~~~s~~~ 312 (446)
T 1pp9_A 305 QSFQTFNI 312 (446)
T ss_dssp SEEEEEEE
T ss_pred EEEEEecc
Confidence 99988764
No 7
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=3.6e-43 Score=344.80 Aligned_cols=288 Identities=15% Similarity=0.139 Sum_probs=261.6
Q ss_pred CCceEEEEcCCCcEEEEEeCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEE
Q 015795 76 PGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (400)
Q Consensus 76 ~~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (400)
.++++.++|+||++|++.+.+ .+.+++.+++++|+..+ +...|++|++++|++.||++++..++.+.++.+|+.++++
T Consensus 11 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~ 89 (434)
T 3gwb_A 11 NLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNG 89 (434)
T ss_dssp -CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEE
T ss_pred CCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEee
Confidence 368899999999999987665 47999999999999999 7899999999999999999999999999999999999999
Q ss_pred eccceEEEEEEecCCC--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCC
Q 015795 155 ASREQMGYSFDALKTY--VPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~--l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~ 231 (400)
++.+.+.|++++++++ ++.+|+++.+++.+|.|++++|+++|+.+++++++..++|...+.+.+.+.+| ++||+++.
T Consensus 90 t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
T 3gwb_A 90 AYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHAS 169 (434)
T ss_dssp ECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCT
T ss_pred ecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999998 99999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCCC-C-CCCCCceEEecCCCC
Q 015795 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-S-VYTGGDYRCQADSGD 308 (400)
Q Consensus 232 ~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 308 (400)
.|+.++|++++.++|++||+++|.|++++++++| ++++++.++++++|+.||..+.+..+. + ...++...+..+.
T Consensus 170 ~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (434)
T 3gwb_A 170 DGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPS-- 247 (434)
T ss_dssp TCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCS--
T ss_pred CCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCC--
Confidence 9999999999999999999999999999999999 999999999999999998764332221 1 2223344444444
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHHHHHcCCC-CCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEee
Q 015795 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNP-HDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSF 387 (400)
Q Consensus 309 ~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg-~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~ 387 (400)
.|++|.++|+++. .++++.+++.|++.+|||+ .+| +||++|||++|++|+++++
T Consensus 248 ~~~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~~s-----------------------~L~~~lRe~~gl~Y~v~~~ 302 (434)
T 3gwb_A 248 SQTSLMLAQLGID--RDDPDYAAVSLGNQILGGGGFGT-----------------------RLMSEVREKRGLTYGVYSG 302 (434)
T ss_dssp SEEEEEEEEECCB--TTCTTHHHHHHHHHHHHSSSSCS-----------------------HHHHHHTTTTCCCSCEEEE
T ss_pred CceeEEecCcCCC--CCCcchHHHHHHHHHhCCCcccc-----------------------hhHHHHHhhcCCcceeeee
Confidence 8999999999887 6889999999999999998 888 9999999999999999998
Q ss_pred eccc
Q 015795 388 QGLH 391 (400)
Q Consensus 388 ~~~~ 391 (400)
..+.
T Consensus 303 ~~~~ 306 (434)
T 3gwb_A 303 FTPM 306 (434)
T ss_dssp ECCB
T ss_pred cccC
Confidence 8754
No 8
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=3.7e-42 Score=336.71 Aligned_cols=286 Identities=16% Similarity=0.225 Sum_probs=257.6
Q ss_pred CceEEEEcCCCcEEEEEeCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCC----CCChHHHHHHHHHcCCee
Q 015795 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR----NRSHLRIVREVEAIGGNV 151 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~----~~s~~~l~~~l~~~g~~~ 151 (400)
++++.++|+||++|++.+++ .+.+++.+++++|+..|++...|++|++++|++.||+ +++..++.+.++.+|+.+
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 56789999999999977665 5799999999999999999999999999999999999 999999999999999999
Q ss_pred EEEeccceEEEEEEecCCCH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCC
Q 015795 152 QASASREQMGYSFDALKTYV--PEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALA 228 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l--~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~ 228 (400)
+++++.+.+.|+++++++++ +.+|+++.+.+.+|.|++++|+++|+.++++++...++|...+.+.+.+.+| ++||+
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999998 9999999999999999999999999999999999899999999999999999 99999
Q ss_pred CCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCC-CCCC-CCCCceEEecC
Q 015795 229 NPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKSV-YTGGDYRCQAD 305 (400)
Q Consensus 229 ~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~ 305 (400)
.+. +.++|++++.++|++||+++|.|++++++++| +++++++++++++|+.||....+.. +.+. ..+..+.+..+
T Consensus 162 ~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
T 3amj_B 162 HVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANP 239 (424)
T ss_dssp CCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECS
T ss_pred CCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCC
Confidence 886 88999999999999999999999999999999 9999999999999999986543322 1111 22233344444
Q ss_pred CCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCC-CCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEE
Q 015795 306 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNP-HDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFI 384 (400)
Q Consensus 306 ~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg-~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv 384 (400)
. ++++|.++|+++. .++++.+++.+++.+||++ .+| |||++|||++|++|++
T Consensus 240 ~--~~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~~~~s-----------------------rL~~~lR~~~gl~y~v 292 (424)
T 3amj_B 240 A--TQAHIAIGMPTLK--RGDPDFFPLVVGNYALGGGGFES-----------------------RLMKEIRDKRGLSYGA 292 (424)
T ss_dssp S--SEEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTSGGGS-----------------------HHHHHHTTTTCCEEEE
T ss_pred C--CccEEEeeccCCC--CCCcchHHHHHHHHHhCCCCccc-----------------------hhHHHHHHhCCeEEEe
Confidence 4 8999999999876 6889999999999999997 888 9999999999999999
Q ss_pred Eeeeccc
Q 015795 385 FSFQGLH 391 (400)
Q Consensus 385 ~s~~~~~ 391 (400)
+++....
T Consensus 293 ~~~~~~~ 299 (424)
T 3amj_B 293 YSYFSPQ 299 (424)
T ss_dssp EEEECCB
T ss_pred eeeeccC
Confidence 9987654
No 9
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=1.2e-41 Score=334.38 Aligned_cols=289 Identities=30% Similarity=0.494 Sum_probs=258.3
Q ss_pred CCCCceEEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEE
Q 015795 74 VEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQA 153 (400)
Q Consensus 74 ~~~~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 153 (400)
+..++++.++|+||++|++.++..+.+++.+++++|+..|++...|++|++++|++.||++++..++.+.++.+|+.+++
T Consensus 19 ~~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na 98 (439)
T 1pp9_B 19 PHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSV 98 (439)
T ss_dssp C-CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEE
T ss_pred ccCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEE
Confidence 34578999999999999987666689999999999999999899999999999999999999999999999999999999
Q ss_pred EeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 015795 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLA 233 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~ 233 (400)
+++.+.+.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.+++.+|.+||+++..+
T Consensus 99 ~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g 178 (439)
T 1pp9_B 99 TSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYC 178 (439)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSC
T ss_pred EecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997789998889
Q ss_pred ChHhhcccCHHHHHHHHHhhcCCCCeEEEEEcCCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCceEEecCCCCCceEE
Q 015795 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHF 313 (400)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvGv~~~~l~~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~qs~v 313 (400)
+.++|++++.++|++||+++|.|++++++++|-++++++++++++|+ |+....+....+.+.++...+..+. ++++|
T Consensus 179 ~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 255 (439)
T 1pp9_B 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGD--SLVHA 255 (439)
T ss_dssp CGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCC--SEEEE
T ss_pred CHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCc--cceEE
Confidence 99999999999999999999999999999999888999999999998 9865433222223334444444444 89999
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHcCCC--------CCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEE
Q 015795 314 VLAFELPGGWHKDKDAMTLTVLQVMISNP--------HDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIF 385 (400)
Q Consensus 314 ~~~~~~~~~~~~~~d~~~l~vL~~lLggg--------~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~ 385 (400)
.++|++++ +++++.+++.|++.+|||+ +++ +||++|||++|++|+++
T Consensus 256 ~~~~~~~~--~~~~~~~~~~ll~~iLg~~~~~~~~~g~~s-----------------------~L~~~lRe~~gl~Y~~~ 310 (439)
T 1pp9_B 256 ALVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGSNATS-----------------------SLYQAVAKGVHQPFDVS 310 (439)
T ss_dssp EEEEECCC--TTSHHHHHHHHHHHHHCCSCSBTTCCCTTC-----------------------HHHHHHHHHCCSCEEEE
T ss_pred EEEecCCC--CCchHHHHHHHHHHHhCCCcccCCCCCccC-----------------------HHHHHHHHhcCCceEEE
Confidence 99999987 6889999999999999985 356 99999999999999999
Q ss_pred eeecc
Q 015795 386 SFQGL 390 (400)
Q Consensus 386 s~~~~ 390 (400)
++...
T Consensus 311 ~~~~~ 315 (439)
T 1pp9_B 311 AFNAS 315 (439)
T ss_dssp EEEEE
T ss_pred Eeecc
Confidence 97653
No 10
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=5.1e-39 Score=314.83 Aligned_cols=277 Identities=17% Similarity=0.250 Sum_probs=242.3
Q ss_pred EEEEcCCCcEEEEEeCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEeccc
Q 015795 80 KISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASRE 158 (400)
Q Consensus 80 ~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~ 158 (400)
+.++|+||++|++.+++ .+.+++.+++++|+..|++...|++|+++||++.|+.+ ..++..|+.++++++.+
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 45789999999987665 46999999999999999999999999999999998743 34788999999999999
Q ss_pred eEEEEEEecCCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHhc-CCCCCCCCCC
Q 015795 159 QMGYSFDALKTYVPEMVELLIDCVRNPV---FLDWEVNEQLTKVKSEISEVSNNP-QSLLLEAIHSAGY-SGALANPLLA 233 (400)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~ll~~~l~~p~---f~~~~~~~~k~~~~~~l~~~~~~p-~~~~~~~l~~~~~-~~p~~~~~~~ 233 (400)
.+.|++++++++++.+|+++.+++.+|. |++++|+++|+.++++++...++| ...+.+.+++.+| ++||+++..|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999 999999999999999999888999 9999999999999 9999999889
Q ss_pred ChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCC-CCCCCCCceEEecCCCCCce
Q 015795 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-KSVYTGGDYRCQADSGDQLT 311 (400)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~qs 311 (400)
+.++|++++.++|++||+++|.|++++++++| +++++++++++++|+.||....+... ++.+.++...+..+ +.+++
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 233 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDD-TLPKA 233 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECT-TSSSE
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCC-CCCce
Confidence 99999999999999999999999999999999 99999999999988889865432211 12223333433332 33799
Q ss_pred EEEEEeecCCCCCCCCchHHHHHHHHHcCCC---------CCcccccccccccccccceeeeeccchhhHHHHhhcCeeE
Q 015795 312 HFVLAFELPGGWHKDKDAMTLTVLQVMISNP---------HDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCI 382 (400)
Q Consensus 312 ~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg---------~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Y 382 (400)
+|.++|++++ .++++.+++.+++.+||++ +++ +||++||| +|++|
T Consensus 234 ~v~~~~~~~~--~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s-----------------------~L~~~lRe-~gl~y 287 (431)
T 3cx5_A 234 WISLAVEGEP--VNSPNYFVAKLAAQIFGSYNAFEPASRLQGI-----------------------KLLDNIQE-YQLCD 287 (431)
T ss_dssp EEEEEEECCC--TTCTTHHHHHHHHHHHCEEETTCTTGGGSSC-----------------------THHHHHHT-TTCCS
T ss_pred EEEEEeecCC--CCCccHHHHHHHHHHcCCCccCCCCcccccc-----------------------HHHHHHHh-cCcee
Confidence 9999999987 6889999999999999963 456 99999997 59999
Q ss_pred EEEeeecc
Q 015795 383 FIFSFQGL 390 (400)
Q Consensus 383 sv~s~~~~ 390 (400)
+++++...
T Consensus 288 ~v~~~~~~ 295 (431)
T 3cx5_A 288 NFNHFSLS 295 (431)
T ss_dssp EEEEEEEE
T ss_pred eEeEeecc
Confidence 99987653
No 11
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=7.1e-39 Score=343.26 Aligned_cols=288 Identities=13% Similarity=0.126 Sum_probs=253.6
Q ss_pred CCCceEEEEcCCCcEEEEEeCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCC-hHHHHHHHHHcCCeeE
Q 015795 75 EPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQ 152 (400)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~ 152 (400)
+...++..+|+||++|++.+.+ .+.+.+.+++++|+..|+++..|++|+++||+|.||.+++ ..++.+.++.+|+.++
T Consensus 17 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~N 96 (939)
T 1q2l_A 17 DNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHN 96 (939)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcce
Confidence 4456899999999999976654 5689999999999999999999999999999999999997 5799999999999999
Q ss_pred EEeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCC
Q 015795 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (400)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~ 231 (400)
++++.+++.|.+++++++++.+|+++.+.+.+|.|++++++++|..+.+|++...++|...+.+.+...+| +|||+++.
T Consensus 97 A~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 176 (939)
T 1q2l_A 97 ASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFS 176 (939)
T ss_dssp EEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCC
T ss_pred EEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCChHhhcc----cCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCCCCC--CceEE
Q 015795 232 LAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTG--GDYRC 302 (400)
Q Consensus 232 ~~~~~~l~~----it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~--~~~~~~--~~~~~ 302 (400)
.|+.++|.. ++.++|++||+++|.|+||+|+|+| +++++++++++++|++||....+.+. .+.+.. ....+
T Consensus 177 ~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (939)
T 1q2l_A 177 GGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIII 256 (939)
T ss_dssp SCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEE
T ss_pred CCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEE
Confidence 999999999 9999999999999999999999999 99999999999999999865432221 122221 12233
Q ss_pred ecCCCCCceEEEEEeecCCCCCCC-CchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCee
Q 015795 303 QADSGDQLTHFVLAFELPGGWHKD-KDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSC 381 (400)
Q Consensus 303 ~~~~~~~qs~v~~~~~~~~~~~~~-~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~ 381 (400)
..++..+++++.++|+.|. ..+ .+..++.+++.+||++.+| +|+++||+ +|++
T Consensus 257 ~~~~~~~~~~l~i~~~~~~--~~~~~~~~~~~~l~~lLg~~~~s-----------------------~L~~~L~~-~gl~ 310 (939)
T 1q2l_A 257 HYVPALPRKVLRVEFRIDN--NSAKFRSKTDELITYLIGNRSPG-----------------------TLSDWLQK-QGLV 310 (939)
T ss_dssp EECCSSCCCEEEEEEEEEC--CGGGGGGCHHHHHHHHHHCCCTT-----------------------SHHHHHHH-TTCE
T ss_pred EEEeCCCCcEEEEEEEcCC--hHHhhhhCHHHHHHHHhcCCCCC-----------------------cHHHHHHH-cCCc
Confidence 3333347899999999987 333 3667889999999998878 99999996 7999
Q ss_pred EEEEeee
Q 015795 382 IFIFSFQ 388 (400)
Q Consensus 382 Ysv~s~~ 388 (400)
|+++++.
T Consensus 311 ~~~~a~~ 317 (939)
T 1q2l_A 311 EGISANS 317 (939)
T ss_dssp EEEEEEE
T ss_pred hheeecc
Confidence 9999874
No 12
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=4e-38 Score=307.77 Aligned_cols=280 Identities=13% Similarity=0.137 Sum_probs=243.4
Q ss_pred EEcCCCcEEEEEeCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCC-ChHHHHHHHHHc-CCeeEEEeccc
Q 015795 82 STLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAI-GGNVQASASRE 158 (400)
Q Consensus 82 ~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~-s~~~l~~~l~~~-g~~~~~~~~~~ 158 (400)
++|+||++|++.+.+ .+.+++.+.+++|+..++ .|++|++++|++.||.++ +..++.+.++.+ |+.++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 899999999987664 589999999999997654 699999999999999998 889999999997 99999999888
Q ss_pred e----EEEEEEecCC-------CHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 015795 159 Q----MGYSFDALKT-------YVPEMVELLIDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAG 222 (400)
Q Consensus 159 ~----~~~~~~~~~~-------~l~~~l~ll~~~l~~p~-----f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~ 222 (400)
. +.++++++++ +++.+|+++.+++.+|. |++++|+++|+.+++++++..++|...+.+.+++.+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 7 6899999887 69999999999999999 999999999999999999988999999999999999
Q ss_pred c--CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCCCCC
Q 015795 223 Y--SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTG 297 (400)
Q Consensus 223 ~--~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~--~~~~~~ 297 (400)
| +|||+++..++.++|++++.++|++||+++|.|++++++++| ++++++++++ ++|+ ||....+..+ ...+.+
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 689999988999999999999999999999999999999999 9999999999 9999 9864432211 111112
Q ss_pred -CceEEecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHh
Q 015795 298 -GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRF 376 (400)
Q Consensus 298 -~~~~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe 376 (400)
....+....+.++++|.++|+++.. .++++.+++.|++.+||||.++ +||++|||
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~vl~~iLg~~~~s-----------------------~L~~~lRe 296 (425)
T 3d3y_A 241 NVIEERTEREVLAQSKLNLAYNTDIY-YGDSYYFALQVFNGIFGGFPHS-----------------------KLFMNVRE 296 (425)
T ss_dssp SSCEEEEEEEECSSEEEEEEEECCCC-TTSTTHHHHHHHHHHHTTSTTS-----------------------HHHHHTTT
T ss_pred CcceeEEecCCccccEEEEEeecCCC-CCCchHHHHHHHHHHhCCChhh-----------------------HHHHHHHH
Confidence 1212222223389999999998632 5889999999999999998888 99999999
Q ss_pred hcCeeEEEEeeecc
Q 015795 377 MRNSCIFIFSFQGL 390 (400)
Q Consensus 377 ~~g~~Ysv~s~~~~ 390 (400)
++|++|++++....
T Consensus 297 ~~glaY~v~~~~~~ 310 (425)
T 3d3y_A 297 KEHLAYYASSSIDT 310 (425)
T ss_dssp TSCCCSEEEEEEET
T ss_pred hcCeEEEEeccccc
Confidence 99999999997654
No 13
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=1.1e-37 Score=310.67 Aligned_cols=280 Identities=17% Similarity=0.133 Sum_probs=232.8
Q ss_pred CceEEEEcCCCcEEEEEeC---CCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHH----HcCC
Q 015795 77 GKTKISTLPNGVKIASETS---VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE----AIGG 149 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~---~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~----~~g~ 149 (400)
|.++.++|+||++|++..+ +.+.+++.+++++|++.|++...|++||++||+|+||.+++..++.+.++ ..|+
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~ 103 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERP 103 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSC
T ss_pred CCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999986443 34699999999999999999999999999999999999999999998765 4799
Q ss_pred eeEEEeccceEEEEEEecC---CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CC
Q 015795 150 NVQASASREQMGYSFDALK---TYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SG 225 (400)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~---~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~ 225 (400)
.++++++.+++.|.+++++ ++++.+|+++.+++.+|.|++++|+++|..+.++++...++|..... ...++ .+
T Consensus 104 ~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 180 (492)
T 3go9_A 104 LPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSS 180 (492)
T ss_dssp CCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTST
T ss_pred CcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCC
Confidence 9999999999999999999 67999999999999999999999999999887777776677754332 24456 66
Q ss_pred CCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCC--C-CCCCCCCce-
Q 015795 226 ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P-KSVYTGGDY- 300 (400)
Q Consensus 226 p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~--~-~~~~~~~~~- 300 (400)
+++++..+ +.|++++.++|++||+++|.|+||+|+++| +++++++++++++|++||.....+. + .++..+..+
T Consensus 181 ~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
T 3go9_A 181 LIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVS 258 (492)
T ss_dssp TTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEE
T ss_pred cccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCceE
Confidence 67766433 578999999999999999999999999999 9999999999999999986543211 1 122222333
Q ss_pred EEecCCCCCceEEEEEeecCCCCCCCCchHHH------HHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHH
Q 015795 301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTL------TVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHL 374 (400)
Q Consensus 301 ~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l------~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~i 374 (400)
.+..+. +|++|.++|+++. ..++|..++ .+++.+||| +|+.+|
T Consensus 259 ~~~~~~--~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg~---------------------------~L~~~l 307 (492)
T 3go9_A 259 LMNEQA--AQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALFW---------------------------HIKQVL 307 (492)
T ss_dssp EEESSC--SSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHHH---------------------------HHHHHH
T ss_pred EEcCCC--CCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHHH---------------------------HHHHHH
Confidence 333344 8999999999986 567776655 799999985 999999
Q ss_pred Hh--hcCeeEEEEeeeccce
Q 015795 375 RF--MRNSCIFIFSFQGLHL 392 (400)
Q Consensus 375 Re--~~g~~Ysv~s~~~~~~ 392 (400)
|| ++|++|+++++.....
T Consensus 308 re~~~~gl~y~~~s~~~~~~ 327 (492)
T 3go9_A 308 EKNNQKNLKLGFDCRVQYQR 327 (492)
T ss_dssp HHSCCTTCEEEEEEEEETTE
T ss_pred HHhhccccccccCchhhhhh
Confidence 99 9999999999875543
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=2.6e-36 Score=325.01 Aligned_cols=291 Identities=16% Similarity=0.174 Sum_probs=251.2
Q ss_pred CCCCceEEEEcCCCcEEEEEeCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCCh-HHHHHHHHHcCCee
Q 015795 74 VEPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNV 151 (400)
Q Consensus 74 ~~~~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~-~~l~~~l~~~g~~~ 151 (400)
.+.+.++..+|+||++|++.+.+ .+.+++.+++++|+..|+++..|++|+++||+|.||.+++. .++.+.++.+|+.+
T Consensus 30 ~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~ 109 (990)
T 3cww_A 30 EDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSS 109 (990)
T ss_dssp TCCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEE
T ss_pred CCCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCce
Confidence 34467899999999999976554 56999999999999999999999999999999999999986 79999999999999
Q ss_pred EEEeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCC
Q 015795 152 QASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANP 230 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~ 230 (400)
+++++.+.+.|.+++++++++.+|+++.+.+.+|.|++++|++++..+.+|++...++|...+.+.+...+| +|||+++
T Consensus 110 NA~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~ 189 (990)
T 3cww_A 110 NAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKF 189 (990)
T ss_dssp EEEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCC
T ss_pred eEEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCChHhhccc-------CHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCCC--CCCCCC--
Q 015795 231 LLAPESAINRL-------NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTGG-- 298 (400)
Q Consensus 231 ~~~~~~~l~~i-------t~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~~--~~~~~~-- 298 (400)
..|+++.|..+ +.++|++||+++|.|+||+|+++| +++++++++++++|+.|+....+.+.. +++...
T Consensus 190 ~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~ 269 (990)
T 3cww_A 190 GTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHL 269 (990)
T ss_dssp CSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGS
T ss_pred CCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHc
Confidence 99999999999 999999999999999999999999 999999999999999998754332211 122111
Q ss_pred ceEEecCCCCCceEEEEEeecCCCCCC-CCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhh
Q 015795 299 DYRCQADSGDQLTHFVLAFELPGGWHK-DKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFM 377 (400)
Q Consensus 299 ~~~~~~~~~~~qs~v~~~~~~~~~~~~-~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~ 377 (400)
...+...+..+++++.++|+.|. .. ..+..++.+++.+||+++.+ .|+.+||+
T Consensus 270 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~lLg~~~~~-----------------------sl~~~Lr~- 323 (990)
T 3cww_A 270 KQLYKIVPIKDIRNLYVTFPIPD--LQKYYKSNPGHYLGHLIGHEGPG-----------------------SLLSELKS- 323 (990)
T ss_dssp SEEEEECCSSSCCEEEEEEEECC--CGGGTTTCHHHHHHHHHTCCSTT-----------------------CHHHHHHH-
T ss_pred CeEEEEEECCCCcEEEEEEEcCC--hhhhhhhCHHHHHHHHhcCCCCC-----------------------cHHHHHHH-
Confidence 11122222237899999999987 33 45678999999999974333 57789997
Q ss_pred cCeeEEEEeeecc
Q 015795 378 RNSCIFIFSFQGL 390 (400)
Q Consensus 378 ~g~~Ysv~s~~~~ 390 (400)
+|++|+++++...
T Consensus 324 ~g~~~~~~a~~~~ 336 (990)
T 3cww_A 324 KGWVNTLVGGQKA 336 (990)
T ss_dssp TTSCSCEEEEEEE
T ss_pred CCCcceeeecccc
Confidence 6999999887653
No 15
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=5e-36 Score=321.47 Aligned_cols=294 Identities=14% Similarity=0.106 Sum_probs=243.2
Q ss_pred CCCCCceEEEEcCCCcEEEEEeCCCC-EEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHH--cCC
Q 015795 73 YVEPGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA--IGG 149 (400)
Q Consensus 73 ~~~~~~~~~~~L~NG~~v~~~~~~~~-~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~--~g~ 149 (400)
++..+.++...|+||++|++.+++.+ .+. ..+..|...+++...|++|+++||+|.||.+++..++...++. +|+
T Consensus 81 ~~~~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~ 158 (1193)
T 3s5m_A 81 EFKMTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHT 158 (1193)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEE
T ss_pred CccccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCc
Confidence 34446788899999999996555443 222 2234466678889999999999999999999999999999988 899
Q ss_pred eeEEEeccceEEEEEEecC-CCHHHHHHHHHHhhcCCCCCHHH--HHHH-----------------------------HH
Q 015795 150 NVQASASREQMGYSFDALK-TYVPEMVELLIDCVRNPVFLDWE--VNEQ-----------------------------LT 197 (400)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~ll~~~l~~p~f~~~~--~~~~-----------------------------k~ 197 (400)
.++++++.|++.|.++++. ++++.+|+++.+.+.+|.|++++ |..+ |.
T Consensus 159 ~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~ 238 (1193)
T 3s5m_A 159 HLNAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNG 238 (1193)
T ss_dssp EEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEEC
T ss_pred eEEeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHH
Confidence 9999999999999999888 99999999999999999998877 7665 56
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHH
Q 015795 198 KVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 275 (400)
Q Consensus 198 ~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv 275 (400)
.+.+|++...++|...+.+.+.+.+| +|||+++..|++++|..++.++|++||+++|.|+|++|+++| ++++++++++
T Consensus 239 vV~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v 318 (1193)
T 3s5m_A 239 IVYNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFV 318 (1193)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHH
Confidence 89999999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred HhhcCCCCCCCCCC---C--CC-CCCCCC-ceEEec--CCCCCceEEEEEeecCCC--C-CC------------------
Q 015795 276 EPLLSDLPSIHPRE---E--PK-SVYTGG-DYRCQA--DSGDQLTHFVLAFELPGG--W-HK------------------ 325 (400)
Q Consensus 276 ~~~~~~l~~~~~~~---~--~~-~~~~~~-~~~~~~--~~~~~qs~v~~~~~~~~~--~-~~------------------ 325 (400)
+++|+.|+..+... . +. +...+. .+.+.. ..+..|+++.++|.+++. . .+
T Consensus 319 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~ 398 (1193)
T 3s5m_A 319 DQYLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSN 398 (1193)
T ss_dssp HHHHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------
T ss_pred HHHhccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCccccccccccccccccccccccccc
Confidence 99999998643211 1 11 122222 222221 123479999999998741 0 12
Q ss_pred -----------CCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEE-eeeccce
Q 015795 326 -----------DKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIF-SFQGLHL 392 (400)
Q Consensus 326 -----------~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~-s~~~~~~ 392 (400)
++|.+++.||+.+||||.+| +||++||| .|++|+++ +++....
T Consensus 399 ~~~~~~~~~~~~~d~~al~vL~~iLggg~sS-----------------------rL~~~L~e-~gLa~~v~~~~~~~~~ 453 (1193)
T 3s5m_A 399 GSHSSDLSLENPTDYFVLLIINNLLIHTPES-----------------------VLYKALTD-CGLGNNVIDRGLNDSL 453 (1193)
T ss_dssp CCCCSTTCCCSHHHHHHHHHHHHHHHSSTTS-----------------------HHHHHHHH-HCSCSEEEEEEEECSS
T ss_pred ccccccccccCccHHHHHHHHHHHHCCCCCC-----------------------HHHHHHHh-cCCeeeeccccccccc
Confidence 47899999999999999999 99999998 69999998 5554443
No 16
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=5.5e-35 Score=278.92 Aligned_cols=242 Identities=22% Similarity=0.353 Sum_probs=213.2
Q ss_pred cEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEeccceEEEEEEec
Q 015795 88 VKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (400)
Q Consensus 88 ~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (400)
+||++++.+.+.+++++++++|+++|+ ..|++|+++||+++||++++..++.+.++.+|+.++++++.+++.|+++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 588998888899999999999999974 789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHH
Q 015795 168 KTYVPEMVELLIDCVRNPVFLDWEVN-EQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 246 (400)
Q Consensus 168 ~~~l~~~l~ll~~~l~~p~f~~~~~~-~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l 246 (400)
+++++.+|+++.+++++|.|++++|+ ++|+.++++++...++|...+.+.+++.+|.|||+++.. .++|++++.++|
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l 156 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDI 156 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999889998864 689999999999
Q ss_pred HHHHHhhcCCCCeEEEEEcCCHHHHHHHH-HhhcCCCCCCCCCCC--CCCCCCCCceEEecCCCCCceEEEEEeecCCCC
Q 015795 247 EEFVAENYTGPRMVLAASGVEHDQLVSVA-EPLLSDLPSIHPREE--PKSVYTGGDYRCQADSGDQLTHFVLAFELPGGW 323 (400)
Q Consensus 247 ~~f~~~~~~~~~~~l~vvGv~~~~l~~lv-~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~qs~v~~~~~~~~~~ 323 (400)
++||+++|.|+|++++++|++++++++++ +++|++||....+.. +.+.+.++...+. .. .|+.+.++++
T Consensus 157 ~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~----- 228 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVR-FI--GDSVAAIGIP----- 228 (352)
T ss_dssp HHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEE-CS--SSEEEEEEEE-----
T ss_pred HHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEe-cC--CCceEEEecC-----
Confidence 99999999999999999999999999999 899999986543221 1122333344433 23 6777776543
Q ss_pred CCCCchHHHHHHHHHcCC
Q 015795 324 HKDKDAMTLTVLQVMISN 341 (400)
Q Consensus 324 ~~~~d~~~l~vL~~lLgg 341 (400)
+++++.+++.||+.+||+
T Consensus 229 ~~~~~~~~l~vl~~iLg~ 246 (352)
T 3cx5_B 229 VNKASLAQYEVLANYLTS 246 (352)
T ss_dssp ECTTTHHHHHHHHHHHHS
T ss_pred CCChhHHHHHHHHHHhCc
Confidence 356899999999999984
No 17
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.3e-35 Score=317.79 Aligned_cols=281 Identities=12% Similarity=0.082 Sum_probs=238.4
Q ss_pred CceEEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHH-HHHHHHH-cCCeeEEE
Q 015795 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR-IVREVEA-IGGNVQAS 154 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~-l~~~l~~-~g~~~~~~ 154 (400)
..++..+|+||++|++.+++.... ++..|+..+++...|++|+++||+|.||.+++..+ +.+.+.. .|+.++++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 456778999999999776655422 25668888888999999999999999999998777 4555554 78999999
Q ss_pred eccceEEEEEEec-CCCHHHHHHHHHHhhcCCCC--CHHHHHHH---------------HHHHHHHHHhhcCCHHHHHHH
Q 015795 155 ASREQMGYSFDAL-KTYVPEMVELLIDCVRNPVF--LDWEVNEQ---------------LTKVKSEISEVSNNPQSLLLE 216 (400)
Q Consensus 155 ~~~~~~~~~~~~~-~~~l~~~l~ll~~~l~~p~f--~~~~~~~~---------------k~~~~~~l~~~~~~p~~~~~~ 216 (400)
++.|++.|.+.+. .++++.+|+++.+.+.+|.| ++++|+++ |..+.+|++...++|...+.+
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~ 191 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGR 191 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHH
Confidence 9999999999875 56899999999999999999 99999999 889999999999999999999
Q ss_pred HHHHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCC--CCC--CCCC
Q 015795 217 AIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLP--SIH--PREE 290 (400)
Q Consensus 217 ~l~~~~~-~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~--~~~--~~~~ 290 (400)
.+.+.+| +|||+++.+|++++|.+++.++|++||+++|.|+||+|+++| +|+++++++++++|+.|+ ... ....
T Consensus 192 ~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~ 271 (995)
T 2fge_A 192 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK 271 (995)
T ss_dssp HHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC
T ss_pred HHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccC
Confidence 9999999 999999999999999999999999999999999999999999 999999999999999998 422 1111
Q ss_pred CCCCCCCCc---eEEec---CCCCCceEEEEEeecCCCCCC--CCchHHHHHHHHHcCCCCCccccccccccccccccee
Q 015795 291 PKSVYTGGD---YRCQA---DSGDQLTHFVLAFELPGGWHK--DKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIR 362 (400)
Q Consensus 291 ~~~~~~~~~---~~~~~---~~~~~qs~v~~~~~~~~~~~~--~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~ 362 (400)
+.+.+.... ..+.. +.+.+|++|.++|++|. .. +++..++.+|+.+|||+.+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~a~~vl~~~Lg~~~~S----------------- 332 (995)
T 2fge_A 272 FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE--KPLDLQTQLALGFLDHLMLGTPAS----------------- 332 (995)
T ss_dssp CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCS--SCCCHHHHHHHHHHHHHHHSSTTS-----------------
T ss_pred CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCC--CcCCHHHHHHHHHHHHHHcCCCCC-----------------
Confidence 122232221 12211 33347999999999987 44 58899999999999999888
Q ss_pred eeeccchhhHHHHhhcCeeEEEEee
Q 015795 363 IWYIDGSFYLHLRFMRNSCIFIFSF 387 (400)
Q Consensus 363 ~~~~~~~L~~~iRe~~g~~Ysv~s~ 387 (400)
+|+++|||+ |++|+++++
T Consensus 333 ------~L~~~l~e~-gl~~~~~~~ 350 (995)
T 2fge_A 333 ------PLRKILLES-GLGEALVSS 350 (995)
T ss_dssp ------HHHHHHHHT-TSCSEECSC
T ss_pred ------HHHHHHHhc-CCCcceeec
Confidence 999999995 999999875
No 18
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.95 E-value=4e-27 Score=253.63 Aligned_cols=287 Identities=11% Similarity=0.048 Sum_probs=224.1
Q ss_pred CceEEEEcCCCcEEEEEeCCC-CEEEEEEEEcccccCCCCCCCcHHHHHHHHHhc-cCCCCChHHHHHHHHHcCCeeEE-
Q 015795 77 GKTKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHLRIVREVEAIGGNVQA- 153 (400)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~-~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~- 153 (400)
.+++. .+.||++|++.+++. +.+++.+++++|.. ++...+..+++..++.. ||+++++.++.+.++...|.+++
T Consensus 552 ~~~~~-~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~ 628 (995)
T 2fge_A 552 VPTEV-GDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVY 628 (995)
T ss_dssp CCCEE-EESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEE
T ss_pred CCcee-eecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEee
Confidence 34444 348999999877765 59999999999887 34577889999888774 99999999999999965555555
Q ss_pred ----Eecc-----ceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHh
Q 015795 154 ----SASR-----EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEVS-NNPQSLLLEAIHSAG 222 (400)
Q Consensus 154 ----~~~~-----~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~-~~~~~k~~~~~~l~~~~-~~p~~~~~~~l~~~~ 222 (400)
+++. +.+.+++++++++++.+++++.+++++|.|+++ +|++++++++.++++.. +++..++...++..+
T Consensus 629 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 708 (995)
T 2fge_A 629 PLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAML 708 (995)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred ccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhC
Confidence 5544 889999999999999999999999999999999 99999999999999876 577777788887765
Q ss_pred c-CCCCCCCC-----CCCh--------HhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCH-HHHHHHHHhhcCCC-CCC
Q 015795 223 Y-SGALANPL-----LAPE--------SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEH-DQLVSVAEPLLSDL-PSI 285 (400)
Q Consensus 223 ~-~~p~~~~~-----~~~~--------~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~-~~l~~lv~~~~~~l-~~~ 285 (400)
+ .+++.... .... +.++.+ .++|++||+++|.+++++++++| +++ +++.++++++|+.| |..
T Consensus 709 ~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~ 787 (995)
T 2fge_A 709 NIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENP 787 (995)
T ss_dssp CHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSC
T ss_pred ChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccC
Confidence 5 55553221 1111 457889 99999999999999999999999 995 99999999999999 754
Q ss_pred CCCCCCCCCCCCCc--eEEecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceee
Q 015795 286 HPREEPKSVYTGGD--YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRI 363 (400)
Q Consensus 286 ~~~~~~~~~~~~~~--~~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~ 363 (400)
..+..+. .+..+. .....+ ....++..+++... +++++.+++.||+.+||++
T Consensus 788 ~~~~~~~-~~~~~~~~~~~~~~--~~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~~--------------------- 841 (995)
T 2fge_A 788 SGGLVTW-DGRLPLRNEAIVIP--TQVNYVGKAGNIYS--TGYELDGSAYVISKHISNT--------------------- 841 (995)
T ss_dssp SSCSCCC-CCCCCCCCEEEECS--CSSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHHT---------------------
T ss_pred CCCCCcc-cccCCccceEEEec--CceEEEEEecCCCC--CCCcccHHHHHHHHHHCCC---------------------
Confidence 3322111 111111 112222 25666666776655 6899999999999999975
Q ss_pred eeccchhhHHHHhhcCeeEEEEeeeccceeee-eccC
Q 015795 364 WYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFS-FHGF 399 (400)
Q Consensus 364 ~~~~~~L~~~iRe~~g~~Ysv~s~~~~~~~~~-~~~~ 399 (400)
+||++||| +|++|+++++....+.+. +.+|
T Consensus 842 -----~L~~~iRe-~g~aYg~~s~~~~~G~~~~~~s~ 872 (995)
T 2fge_A 842 -----WLWDRVRV-SGGAYGGFCDFDSHSGVFSYLSY 872 (995)
T ss_dssp -----HHHHHTTT-TTCCSEEEEEEETTTTEEEEEEE
T ss_pred -----ccHHHhhh-cCCCcccceEeCCCccEEEEEEE
Confidence 99999999 999999999887666666 5554
No 19
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.94 E-value=3.1e-26 Score=245.35 Aligned_cols=274 Identities=9% Similarity=0.043 Sum_probs=212.9
Q ss_pred eEEEEcCCCcEEEEEeCC-C---CEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEE
Q 015795 79 TKISTLPNGVKIASETSV-S---PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (400)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~-~---~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (400)
.+.++|+||++|++++++ . |.+.|.+.+.+|...+++...|+++++..|+..|+.++ ....+..|.+++++
T Consensus 500 p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~-----~~~~~l~G~~~~~~ 574 (939)
T 1q2l_A 500 PELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL-----SNQASVGGISFSTN 574 (939)
T ss_dssp CEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH-----HHHHHHTTEEEEEE
T ss_pred CEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH-----hhHHHHcCcEEEEe
Confidence 467889999999988776 3 49999999999998887777799999999998876543 22344567788888
Q ss_pred eccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 015795 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV-SNNPQSLLLEAIHSAGYSGALANPLLA 233 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~-~~~p~~~~~~~l~~~~~~~p~~~~~~~ 233 (400)
. .+.+.+++++.+++++.+|+++.+.+++|.|++++|+++|++++.++++. .++|...+.+.++.++|++ + .+..+
T Consensus 575 ~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~-~-~~~~~ 651 (939)
T 1q2l_A 575 A-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP-Y-FSRDE 651 (939)
T ss_dssp E-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS-C-CCHHH
T ss_pred e-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC-C-CCHHH
Confidence 8 89999999999999999999999999999999999999999999999987 5679999999999988832 2 33336
Q ss_pred ChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCCC--CCCCCC-ceEEecCCCCC
Q 015795 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTGG-DYRCQADSGDQ 309 (400)
Q Consensus 234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~~--~~~~~~-~~~~~~~~~~~ 309 (400)
+.+.|++++.++|++||+++|.+.+++++++| +++++++++++++++.|+......... .....+ ...+....+..
T Consensus 652 ~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (939)
T 1q2l_A 652 RRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNST 731 (939)
T ss_dssp HHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCEEECCCSCEEEEEEECCSSS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccceEEeCCCceEEEecCCCCC
Confidence 78899999999999999999999999999999 999999999999998887543221111 111222 22222222224
Q ss_pred ceEE-EEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEeee
Q 015795 310 LTHF-VLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQ 388 (400)
Q Consensus 310 qs~v-~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~ 388 (400)
++.+ .++|..+. .+ ....++..+||+++++ +||++|||++|++|+|+++.
T Consensus 732 ~~~~~~~~~~~~~--~~----~~~~~~~~lL~~~~~s-----------------------~lf~~LRek~gl~Y~v~s~~ 782 (939)
T 1q2l_A 732 DSALAAVFVPTGY--DE----YTSSAYSSLLGQIVQP-----------------------WFYNQLRTEEQLGYAVFAFP 782 (939)
T ss_dssp CEEEEEEEECSSC--CH----HHHHHHHHHHHHHHHH-----------------------HHTHHHHTSCCSSSCEEEEE
T ss_pred CceeEEEEEecCC--CC----HHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhCceeeeeE
Confidence 5555 56665542 23 3334444455554556 99999999999999999987
Q ss_pred c
Q 015795 389 G 389 (400)
Q Consensus 389 ~ 389 (400)
.
T Consensus 783 ~ 783 (939)
T 1q2l_A 783 M 783 (939)
T ss_dssp E
T ss_pred e
Confidence 5
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.92 E-value=7.3e-24 Score=228.15 Aligned_cols=276 Identities=12% Similarity=0.085 Sum_probs=218.8
Q ss_pred eEEEEcCCCcEEEEEeCC---CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEe
Q 015795 79 TKISTLPNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (400)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~---~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (400)
...++++||++|+.++++ .|...+.+.+.+|...+++...+++.++..|+..+ ++..++...+ .|.++++++
T Consensus 519 p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~~~~~~~~l--~G~~~~~~~ 593 (990)
T 3cww_A 519 PALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LNEYAYAAEL--AGLSYDLQN 593 (990)
T ss_dssp CEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HHHHHHHHHH--TTEEEEEEE
T ss_pred CeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HHHhhhHHHh--CCeEEEEEE
Confidence 366889999999987665 35777777777776667766778999999988653 3455565555 588899999
Q ss_pred ccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhcCCCCCCCCCCC
Q 015795 156 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSN-NPQSLLLEAIHSAGYSGALANPLLAP 234 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~-~p~~~~~~~l~~~~~~~p~~~~~~~~ 234 (400)
+.+.+.+++++++++++.+|+++.+.+++|.|++++|+++|++++..+++... +|..++...+...++++++... ++
T Consensus 594 ~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~~--~~ 671 (990)
T 3cww_A 594 TIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKD--EL 671 (990)
T ss_dssp ETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCHH--HH
T ss_pred cCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCHH--HH
Confidence 99999999999999999999999999999999999999999999999998777 8999999999998885555432 46
Q ss_pred hHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHH---HHhhcCCCCCCCCCC-----C-CCCCCCCCce-EEe
Q 015795 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSV---AEPLLSDLPSIHPRE-----E-PKSVYTGGDY-RCQ 303 (400)
Q Consensus 235 ~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~l---v~~~~~~l~~~~~~~-----~-~~~~~~~~~~-~~~ 303 (400)
.+.|++++.++|.+|++++|.+.+++++++| ++.+++.++ ++++|+.+|...+.. . .......+.. .+.
T Consensus 672 ~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (990)
T 3cww_A 672 KEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQ 751 (990)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEE
Confidence 7889999999999999999999999999999 999999888 677887665321111 0 1111112222 221
Q ss_pred -cCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeE
Q 015795 304 -ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCI 382 (400)
Q Consensus 304 -~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Y 382 (400)
..++..++.+.+++..+. ++.++.+++.||+.+|. + +||.+|||++|++|
T Consensus 752 ~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~ll~~il~----~-----------------------~lf~~LRek~~lgY 802 (990)
T 3cww_A 752 QRNEVHNNSGIEIYYQTDM--QSTSENMFLELFAQIIS----E-----------------------PAFNTLRTKEQLGY 802 (990)
T ss_dssp EECSSCSSEEEEEEEEEEE--CCHHHHHHHHHHHHHHH----H-----------------------HHHHHHTTTTCCCS
T ss_pred ecCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHHH----H-----------------------HHHHHHHhccCCcE
Confidence 233336777777777754 68889999999999995 3 99999999999999
Q ss_pred EEEeeecc
Q 015795 383 FIFSFQGL 390 (400)
Q Consensus 383 sv~s~~~~ 390 (400)
++++....
T Consensus 803 ~v~s~~~~ 810 (990)
T 3cww_A 803 IVFSGPRR 810 (990)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 99997755
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.89 E-value=2.7e-23 Score=223.22 Aligned_cols=280 Identities=11% Similarity=0.099 Sum_probs=203.6
Q ss_pred CCCcEEEEEeCCCC-EEEEEEEEcccccCCCCCCCcHHHHHHHHH-hccCCCCChHHHHHHHHHcCCeeEEEec------
Q 015795 85 PNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMA-FRSTRNRSHLRIVREVEAIGGNVQASAS------ 156 (400)
Q Consensus 85 ~NG~~v~~~~~~~~-~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~-~~gt~~~s~~~l~~~l~~~g~~~~~~~~------ 156 (400)
.||++|+..+.+.+ ++++.++++.|...+ +..+...|+..++ ..||+++++.++.+.++.++|+++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~~--e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLTV--DELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCCH--HHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCCH--HHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccc
Confidence 48999998777664 999999999997653 3455666666665 5699999999999999999999988874
Q ss_pred ----------cceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHhc-
Q 015795 157 ----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEV-SNNPQSLLLEAIHSAGY- 223 (400)
Q Consensus 157 ----------~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~-~~~~k~~~~~~l~~~-~~~p~~~~~~~l~~~~~- 223 (400)
...+.++++++.++++++++|+.+++++|+|++.+ +...+++++..+++. ..+...++...+.+.+.
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 34578999999999999999999999999999875 777777777777653 34444455555555444
Q ss_pred CCCCCCCCCCChHhh--------------cccCHHHHHHHHHhhcCCCCeEEEEEc-CC-HHHHHHHHHhhcCCCCC---
Q 015795 224 SGALANPLLAPESAI--------------NRLNSTLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPS--- 284 (400)
Q Consensus 224 ~~p~~~~~~~~~~~l--------------~~it~~~l~~f~~~~~~~~~~~l~vvG-v~-~~~l~~lv~~~~~~l~~--- 284 (400)
.+++.....| .+.+ +.| .++|++++++.|+++++++.++| .+ .+++.+.++++++.|+.
T Consensus 882 ~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~ 959 (1193)
T 3s5m_A 882 KHYAHNIIYG-YENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFE 959 (1193)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHH
T ss_pred chhhhhhhCC-hHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccc
Confidence 3333222111 1222 223 67999999999999999999999 65 47777777666655531
Q ss_pred -CCC----------CCC-C--------CCCC-C-CC-ceEEecCCCCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCC
Q 015795 285 -IHP----------REE-P--------KSVY-T-GG-DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISN 341 (400)
Q Consensus 285 -~~~----------~~~-~--------~~~~-~-~~-~~~~~~~~~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLgg 341 (400)
... ... . .... . .. ...+..+. ++++|..+++... ..++|++++.||+.+||+
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~ 1035 (1193)
T 3s5m_A 960 ENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPT--FVNSVSMSGILFK--PGEYLDPSFTVIVAALKN 1035 (1193)
T ss_dssp HGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCC--SSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccceeEecCC--cceEEEEEecCCC--CCCCchHHHHHHHHHHCc
Confidence 000 000 0 0000 1 11 11223333 8899999988776 788999999999999996
Q ss_pred CCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEeeeccceeeeeccC
Q 015795 342 PHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGF 399 (400)
Q Consensus 342 g~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~~~~~~~~~~~~ 399 (400)
+ +||++||||+| ||+++|++...+.|.+++|
T Consensus 1036 ~--------------------------~L~~eIREkgG-AYg~~s~~~~~G~f~~~sy 1066 (1193)
T 3s5m_A 1036 S--------------------------YLWDTVRGLNG-AYGVFADIEYDGSVVFLSA 1066 (1193)
T ss_dssp T--------------------------HHHHHHTTTTC-CSEEEEEECTTSEEEEEEE
T ss_pred c--------------------------HHHHHHHhcCC-eeEEEEeccCCCcEEEEEE
Confidence 4 99999999876 9999999876677777766
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.81 E-value=3.6e-09 Score=91.41 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=52.4
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEeee
Q 015795 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQ 388 (400)
Q Consensus 309 ~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~ 388 (400)
+|++|.++|++|+ ++++|.+++.||+.+||||.+| +||++|||+ |++|+++++.
T Consensus 23 ~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg~sS-----------------------rL~~~lre~-gl~y~~~~~~ 76 (197)
T 3ih6_A 23 GTPLVAAMYHLPA--AGSPDFVGLDLAATILADTPSS-----------------------RLYHALVPT-KLASGVFGFT 76 (197)
T ss_dssp CSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSSTTS-----------------------HHHHHHTTT-TSCSEEEEEE
T ss_pred CCceEEEEEecCC--CCCCcHHHHHHHHHHHcCCCCc-----------------------hHHHHHHhc-CceEEEEecc
Confidence 8999999999997 6889999999999999999999 999999996 9999999977
Q ss_pred ccc
Q 015795 389 GLH 391 (400)
Q Consensus 389 ~~~ 391 (400)
...
T Consensus 77 ~~~ 79 (197)
T 3ih6_A 77 MDQ 79 (197)
T ss_dssp ETT
T ss_pred ccc
Confidence 543
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.51 E-value=1.8e-06 Score=74.25 Aligned_cols=161 Identities=5% Similarity=-0.043 Sum_probs=110.9
Q ss_pred CCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEec------cceEEEEEEecCC-
Q 015795 97 SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS------REQMGYSFDALKT- 169 (400)
Q Consensus 97 ~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~- 169 (400)
.+...+.+.+.+....++ ..-...++..++..|... .|.+.+...|...++++. ...+.+.+.+.++
T Consensus 22 ~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLggg~sS----rL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~ 95 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAGSP--DFVGLDLAATILADTPSS----RLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGM 95 (197)
T ss_dssp CCSCEEEEEEECCCTTST--THHHHHHHHHHHHSSTTS----HHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTS
T ss_pred CCCceEEEEEecCCCCCC--cHHHHHHHHHHHcCCCCc----hHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCC
Confidence 344455555555554432 344566777777655432 344444334554444332 2356777777777
Q ss_pred CHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHH
Q 015795 170 YVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 246 (400)
Q Consensus 170 ~l~~~l~ll~~~l~~---p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l 246 (400)
+.+++++.+.+.+.+ -.+++++++++|..++..+....+++...+.......+++.+. ......+.|+++|.+|+
T Consensus 96 ~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~~--~~~~~~~~i~~vT~~dv 173 (197)
T 3ih6_A 96 DQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWR--LFFLQRDRVREAKLDDV 173 (197)
T ss_dssp CHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCTT--HHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCHHHH
Confidence 699999888777754 4699999999999999999988899988887776665543221 11123477899999999
Q ss_pred HHHHHhhcCCCCeEEEEEc
Q 015795 247 EEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 247 ~~f~~~~~~~~~~~l~vvG 265 (400)
.++.+++|.+++.+++++|
T Consensus 174 ~~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 174 QRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHHSSGGGCEEEEEC
T ss_pred HHHHHHhCCccCeEEEEEe
Confidence 9999999999999998887
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.22 E-value=8e-06 Score=78.75 Aligned_cols=165 Identities=8% Similarity=-0.022 Sum_probs=114.5
Q ss_pred eCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHH-HcCCeeEEEec------cceEEEEEEe
Q 015795 94 TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGGNVQASAS------REQMGYSFDA 166 (400)
Q Consensus 94 ~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~~~~~~~~------~~~~~~~~~~ 166 (400)
..+.+...+.+.+.+.....+ ......++..++..|.. ..|.+.+. ..|..+++++. ...+.+...+
T Consensus 229 ~~~~~q~~v~~~~~~~~~~~~--d~~~l~vl~~iLgg~~~----srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~ 302 (421)
T 3hdi_A 229 KKETEQAHLCLGYPGLPIGDK--DVYALVLLNNVLGGSMS----SRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGT 302 (421)
T ss_dssp ECCCSEEEEEEEEECCCTTCT--THHHHHHHHHHHTSSSS----SHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEE
T ss_pred cCCCCceEEEEEEecCCCCCc--hHHHHHHHHHHhCCCcc----cHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEe
Confidence 345567777777776544332 44455666777654422 34555554 34654444332 2346677777
Q ss_pred cCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCChHhhcccC
Q 015795 167 LKTYVPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLN 242 (400)
Q Consensus 167 ~~~~l~~~l~ll~~~l~---~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~it 242 (400)
.+++.+++++.+.+.+. +-.+++++++++|..++..+....+++...+.......++ +.+.... ...+.|+++|
T Consensus 303 ~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~vt 380 (421)
T 3hdi_A 303 GHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLD--EMIEQINAVQ 380 (421)
T ss_dssp EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHH--HHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHcCC
Confidence 78889988888877664 4469999999999999999998888888877766555555 3332111 2346789999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEc-CC
Q 015795 243 STLLEEFVAENYTGPRMVLAASG-VE 267 (400)
Q Consensus 243 ~~~l~~f~~~~~~~~~~~l~vvG-v~ 267 (400)
.+|+.++.++++ +++++++++| .+
T Consensus 381 ~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 381 KQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHHHHHHHHc-ccCcEEEEECchh
Confidence 999999999999 9999999999 54
No 25
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.21 E-value=9.4e-05 Score=71.61 Aligned_cols=168 Identities=10% Similarity=0.031 Sum_probs=114.4
Q ss_pred eCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhc-----cCCCCChHHHHHHHH-HcCCeeEEEe------ccceEE
Q 015795 94 TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFR-----STRNRSHLRIVREVE-AIGGNVQASA------SREQMG 161 (400)
Q Consensus 94 ~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~-----gt~~~s~~~l~~~l~-~~g~~~~~~~------~~~~~~ 161 (400)
..+.+...+.+.+.+.....+ ......++..++.. |.+......|.+.+. ..|...++.. +...+.
T Consensus 241 ~~~~~~~~v~~~~~~~~~~~~--~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~ 318 (443)
T 1hr6_B 241 ENTLPTTHIAIALEGVSWSAP--DYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWG 318 (443)
T ss_dssp CTTCSEEEEEEEEECCCTTCT--THHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEE
T ss_pred cCCccceEEEEEEecCCCCCc--cHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEE
Confidence 334567788887777543332 34455567777643 111122245666665 4555433322 223566
Q ss_pred EEEEec--CCCHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 015795 162 YSFDAL--KTYVPEMVELLIDCV---RNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (400)
Q Consensus 162 ~~~~~~--~~~l~~~l~ll~~~l---~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~ 235 (400)
+.+.+. .++.+++++.+.+.+ .+-.+++++++++|..++..+....+++...+.......++ +.+.... ...
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~ 396 (443)
T 1hr6_B 319 MYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPE--EVF 396 (443)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHH--HHH
T ss_pred EEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHH--HHH
Confidence 777777 789999988887765 45559999999999999999998888887777666555543 4443211 234
Q ss_pred HhhcccCHHHHHHHHHhhcCCCCeEEEEEc
Q 015795 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 236 ~~l~~it~~~l~~f~~~~~~~~~~~l~vvG 265 (400)
+.|+++|.+|+.++.++++.+++++++++|
T Consensus 397 ~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g 426 (443)
T 1hr6_B 397 EQVDKITKDDIIMWANYRLQNKPVSMVALG 426 (443)
T ss_dssp HHHHTCCHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHhCCHHHHHHHHHHHhccCCcEEEEEC
Confidence 678999999999999999999999999999
No 26
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.20 E-value=4.1e-05 Score=73.75 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=114.2
Q ss_pred EEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCC------CCChHHHHHHHHHcCCeeEEEec------
Q 015795 89 KIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR------NRSHLRIVREVEAIGGNVQASAS------ 156 (400)
Q Consensus 89 ~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~------~~s~~~l~~~l~~~g~~~~~~~~------ 156 (400)
.+.....+.+...+.+.+.+.....+ ......++..++..+.. .++ ..|.+.+...|..+++++.
T Consensus 222 ~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~vl~~iL~~~~~~~~~~~~~~-s~L~~~lRe~gl~y~v~~~~~~~~~ 298 (431)
T 3cx5_A 222 EVRLRDDTLPKAWISLAVEGEPVNSP--NYFVAKLAAQIFGSYNAFEPASRLQG-IKLLDNIQEYQLCDNFNHFSLSYKD 298 (431)
T ss_dssp EEEEECTTSSSEEEEEEEECCCTTCT--THHHHHHHHHHHCEEETTCTTGGGSS-CTHHHHHHTTTCCSEEEEEEEECSS
T ss_pred eEEEcCCCCCceEEEEEeecCCCCCc--cHHHHHHHHHHcCCCccCCCCccccc-cHHHHHHHhcCceeeEeEeecccCC
Confidence 34333334456667777776544332 34455667777754210 011 2344444445554444332
Q ss_pred cceEEEEEEecC-CCHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHhc-CCCCCCC
Q 015795 157 REQMGYSFDALK-TYVPEMVELLIDCVRNP--VFLDWEVNEQLTKVKSEISE--VSNNPQSLLLEAIHSAGY-SGALANP 230 (400)
Q Consensus 157 ~~~~~~~~~~~~-~~l~~~l~ll~~~l~~p--~f~~~~~~~~k~~~~~~l~~--~~~~p~~~~~~~l~~~~~-~~p~~~~ 230 (400)
...+.+.+.+.+ ++.+++++.+.+.+..- .+++++|+++|+.++..+.. ..+++...+.......++ +.+...
T Consensus 299 ~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 377 (431)
T 3cx5_A 299 SGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSL- 377 (431)
T ss_dssp CEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCH-
T ss_pred CceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCH-
Confidence 234667777777 88888888776655321 59999999999999999998 788898877776665543 443321
Q ss_pred CCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-CC
Q 015795 231 LLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (400)
Q Consensus 231 ~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~ 267 (400)
....+.|+++|.+|+.++.++++.+++++++++| .+
T Consensus 378 -~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 378 -GEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp -HHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred -HHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 1234678999999999999999999999999999 53
No 27
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.20 E-value=1.1e-05 Score=77.35 Aligned_cols=163 Identities=11% Similarity=-0.003 Sum_probs=115.2
Q ss_pred eCCC-CEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEecc------ceEEEEEEe
Q 015795 94 TSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR------EQMGYSFDA 166 (400)
Q Consensus 94 ~~~~-~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~------~~~~~~~~~ 166 (400)
+.+. +...+.+.+.+....++ ......++..++..|.. ..|.+.+...|...++++.. ..+.+.+.+
T Consensus 229 ~~~~~~q~~~~~~~~~~~~~~~--d~~~l~vl~~iLgg~~~----srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~ 302 (406)
T 3eoq_A 229 PYEKARALYLVALFPGVAYQEE--ARFPGQVLAHLLGEEGS----GRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQA 302 (406)
T ss_dssp ECTTCSSEEEEEEEECCCTTCT--THHHHHHHHHHHHCTTT----SHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEE
T ss_pred ecCCccceEEEEEecCCCCCCc--hHHHHHHHHHHhCCCcc----hHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEe
Confidence 3344 56666666665554433 33455666777655422 34555554466655554432 346677778
Q ss_pred cCCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCChHhhcccC
Q 015795 167 LKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLN 242 (400)
Q Consensus 167 ~~~~l~~~l~ll~~~l~~---p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~it 242 (400)
.+++.+++++.+.+.+.. -.+++++++++|..++..+....+++...+.......++ ..+.... ...+.|+++|
T Consensus 303 ~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~vt 380 (406)
T 3eoq_A 303 DPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLE--EVKARVQRVT 380 (406)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHH--HHHHHHHHCC
T ss_pred CcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHhCC
Confidence 888899998888777654 359999999999999999998889999888887777776 4432211 2347789999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEc
Q 015795 243 STLLEEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 243 ~~~l~~f~~~~~~~~~~~l~vvG 265 (400)
.+|+.++.++++.++++ ++++|
T Consensus 381 ~~dv~~~a~~~l~~~~~-~~vvG 402 (406)
T 3eoq_A 381 SREVNALLERGFLEKGL-YYLVL 402 (406)
T ss_dssp HHHHHHHHHTTTTTSCE-EEEEE
T ss_pred HHHHHHHHHHhcCcccE-EEEEC
Confidence 99999999999999998 99999
No 28
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.08 E-value=0.00013 Score=70.21 Aligned_cols=164 Identities=12% Similarity=0.027 Sum_probs=113.8
Q ss_pred CCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHH-HcCCeeEEEecc------ceEEEEEEecC
Q 015795 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGGNVQASASR------EQMGYSFDALK 168 (400)
Q Consensus 96 ~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~~~~~~~~~------~~~~~~~~~~~ 168 (400)
+.+...+.+.+.+.....+ ......++..++..| . ....|.+.+. ..|..+++++.. ..+.+.+.+.+
T Consensus 239 ~~~~~~v~~~~~~~~~~~~--~~~~~~vl~~iLg~~--~-~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~ 313 (424)
T 3amj_B 239 PATQAHIAIGMPTLKRGDP--DFFPLVVGNYALGGG--G-FESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRA 313 (424)
T ss_dssp SSSEEEEEEEEEEEBTTCT--THHHHHHHHHHHTTS--G-GGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEES
T ss_pred CCCccEEEeeccCCCCCCc--chHHHHHHHHHhCCC--C-ccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCc
Confidence 4466777777775443322 344556666666432 0 1234666665 366666554422 34667777888
Q ss_pred CCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHH
Q 015795 169 TYVPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTL 245 (400)
Q Consensus 169 ~~l~~~l~ll~~~l~---~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~ 245 (400)
++.+++++.+.+.+. +-.++++++++.|+.++..+....+++...+........++.++... ....+.|+++|.+|
T Consensus 314 ~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vt~~d 392 (424)
T 3amj_B 314 EKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDYL-DHYTERVQAVTVEQ 392 (424)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTTCCTTTT-TSHHHHHHTCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcCCChhHH-HHHHHHHHcCCHHH
Confidence 889888888877665 34599999999999999999887888888777665544444443321 12357899999999
Q ss_pred HHHHHHhhcCCCCeEEEEEc
Q 015795 246 LEEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 246 l~~f~~~~~~~~~~~l~vvG 265 (400)
+.++.++++.+++++++++|
T Consensus 393 v~~~a~~~l~~~~~~~~~~~ 412 (424)
T 3amj_B 393 VREAFARHVKRENLITVVVG 412 (424)
T ss_dssp HHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHHHhcCccceEEEEEC
Confidence 99999999999999999999
No 29
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.07 E-value=8.6e-05 Score=72.06 Aligned_cols=167 Identities=10% Similarity=0.004 Sum_probs=110.6
Q ss_pred eCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhcc-----CCCCChHHHHHHHHHcCCeeEEEec------cceEEE
Q 015795 94 TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRS-----TRNRSHLRIVREVEAIGGNVQASAS------REQMGY 162 (400)
Q Consensus 94 ~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~g-----t~~~s~~~l~~~l~~~g~~~~~~~~------~~~~~~ 162 (400)
+.+.+...+.+.+.+.....+ ......++..++..+ .+.-....|.+.+...|+..+++.. ...+.+
T Consensus 245 ~~~~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~~~~g~~~i 322 (446)
T 1pp9_A 245 EDGLPLAHVAIAVEGPGWAHP--DNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGA 322 (446)
T ss_dssp ETTSSSEEEEEEEEECCTTCT--HHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEEEEE
T ss_pred cCCccceEEEEEEecCCCCCc--cHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccCCCCeEEEE
Confidence 334456666666665544332 344556677777431 0001123355445445544333321 234667
Q ss_pred EEEecCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCChHhh
Q 015795 163 SFDALKTYVPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAI 238 (400)
Q Consensus 163 ~~~~~~~~l~~~l~ll~~~l~---~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l 238 (400)
.+.+.+++.+++++.+.+.+. +. +++++++++|..++..+....+++...+.......++ +.+.... ...+.|
T Consensus 323 ~~~~~~~~~~~~~~~i~~~l~~l~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~i 399 (446)
T 1pp9_A 323 HFVCDHMSIDDMMFVLQGQWMRLCTS-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLA--EWESRI 399 (446)
T ss_dssp EEEECTTSHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHH--HHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHH--HHHHHH
Confidence 777778899988888877653 34 9999999999999999998888888877765555533 4443211 224678
Q ss_pred cccCHHHHHHHHHhhcCCCCeEEEEEc
Q 015795 239 NRLNSTLLEEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 239 ~~it~~~l~~f~~~~~~~~~~~l~vvG 265 (400)
.++|.+|+.++.++++.+++++++++|
T Consensus 400 ~~vt~edv~~~a~~~~~~~~~~~~~~g 426 (446)
T 1pp9_A 400 AEVDARVVREVCSKYFYDQCPAVAGFG 426 (446)
T ss_dssp HTCCHHHHHHHHHHHTTTCCCEEEEEE
T ss_pred HcCCHHHHHHHHHHHcCCCCcEEEEEC
Confidence 899999999999999999999999999
No 30
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.96 E-value=0.00025 Score=69.44 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=112.5
Q ss_pred CCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccC-------CCCChHHHHHHH-HHcCCeeEEEec------cceEE
Q 015795 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRST-------RNRSHLRIVREV-EAIGGNVQASAS------REQMG 161 (400)
Q Consensus 96 ~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt-------~~~s~~~l~~~l-~~~g~~~~~~~~------~~~~~ 161 (400)
+.+...+.+.+.+.....+ ......++..++..|. ++--...|.+.+ +..|...++... ...+.
T Consensus 240 ~~~~~~v~~~~~~~~~~~~--d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~ 317 (475)
T 1hr6_A 240 LPELFHIQIGFEGLPIDHP--DIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFG 317 (475)
T ss_dssp SCCCEEEEEEEECCCTTCT--THHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCCCCCc--cHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEE
Confidence 3346667777775443332 3334456677764321 111123455555 345665444332 23467
Q ss_pred EEEEecCCCHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCC
Q 015795 162 YSFDALKTYVPEMVELLIDCVRN------PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (400)
Q Consensus 162 ~~~~~~~~~l~~~l~ll~~~l~~------p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~ 234 (400)
+.+.+.+++++++++.+.+.+.. -.+++++|+++|..++..+....+++...+.......++ +.+... ...
T Consensus 318 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~ 395 (475)
T 1hr6_A 318 ISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPV--NEM 395 (475)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCH--HHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCH--HHH
Confidence 77888888999999988776654 249999999999999999998888888877766665554 544321 123
Q ss_pred hHhhcccCHHHHHHHHHhhcCC---------CCeEEEEEc-C
Q 015795 235 ESAINRLNSTLLEEFVAENYTG---------PRMVLAASG-V 266 (400)
Q Consensus 235 ~~~l~~it~~~l~~f~~~~~~~---------~~~~l~vvG-v 266 (400)
.+.|+++|.+++.++.++++.+ ++++++++| .
T Consensus 396 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 396 ISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 4678999999999999999988 589999999 5
No 31
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.95 E-value=2e-05 Score=76.05 Aligned_cols=163 Identities=10% Similarity=0.037 Sum_probs=109.5
Q ss_pred CCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhcc-CCCCChHHHHHHHHH-cCCeeEEEecc------ceEEEEEEec
Q 015795 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRS-TRNRSHLRIVREVEA-IGGNVQASASR------EQMGYSFDAL 167 (400)
Q Consensus 96 ~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~g-t~~~s~~~l~~~l~~-~g~~~~~~~~~------~~~~~~~~~~ 167 (400)
+.....+.+.+.+.....+ ......++..++..| .. ..|.+.+.. .|..++++++. ..+.+.+.+.
T Consensus 246 ~~~~~~v~~~~~~~~~~~~--d~~~l~vl~~iLg~~~~~----s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~ 319 (434)
T 3gwb_A 246 PSSQTSLMLAQLGIDRDDP--DYAAVSLGNQILGGGGFG----TRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTR 319 (434)
T ss_dssp CSSEEEEEEEEECCBTTCT--THHHHHHHHHHHHSSSSC----SHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEE
T ss_pred CCCceeEEecCcCCCCCCc--chHHHHHHHHHhCCCccc----chhHHHHHhhcCCcceeeeecccCCCceeEEEEEecc
Confidence 3466677766666544332 334555666666543 22 245555543 35544443322 3567778888
Q ss_pred CCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHH
Q 015795 168 KTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNST 244 (400)
Q Consensus 168 ~~~l~~~l~ll~~~l~~---p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~ 244 (400)
+++.+++++.+.+.+.+ -.+++++|+++|..++..+....+++...+........++.++... ....+.|+++|.+
T Consensus 320 ~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vt~~ 398 (434)
T 3gwb_A 320 AEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYL-EDFMRQSQELTVE 398 (434)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHCCHH
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHhCCHH
Confidence 88888888888777653 3589999999999999999988889988887776655543322111 1124678999999
Q ss_pred HHHHHHHhhcCCCCeEEEEEc
Q 015795 245 LLEEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 245 ~l~~f~~~~~~~~~~~l~vvG 265 (400)
|+.++.++++.+++++++++|
T Consensus 399 dv~~~a~~~l~~~~~~~~vvg 419 (434)
T 3gwb_A 399 QVKAAMNKHLNVDKMVIVSAG 419 (434)
T ss_dssp HHHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHHHHhcChhhEEEEEEc
Confidence 999999999999999999999
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.85 E-value=0.00056 Score=65.93 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=110.7
Q ss_pred CCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccC----CCCChHHHHHHHH-HcCCeeEEEec------cceEEEEE
Q 015795 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRST----RNRSHLRIVREVE-AIGGNVQASAS------REQMGYSF 164 (400)
Q Consensus 96 ~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt----~~~s~~~l~~~l~-~~g~~~~~~~~------~~~~~~~~ 164 (400)
+.+...+.+.+.+.....+ ......++..++..|. +.--...|.+.+. ..|..+++++. ...+.+.+
T Consensus 249 ~~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~ 326 (439)
T 1pp9_B 249 GDSLVHAALVAESAAIGSA--EANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYT 326 (439)
T ss_dssp CCSEEEEEEEEECCCTTSH--HHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEE
T ss_pred CccceEEEEEecCCCCCch--HHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEE
Confidence 4566777777776543322 3334455666664321 0001234555554 45655444432 23456777
Q ss_pred EecCCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCChHhhcc
Q 015795 165 DALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINR 240 (400)
Q Consensus 165 ~~~~~~l~~~l~ll~~~l~~---p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~ 240 (400)
.+.+++++++++.+.+.+.. -.++++++++.|+.++..+....+++...+.......++ +.+... ....+.|++
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~ 404 (439)
T 1pp9_B 327 ISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPP--STVLQQIDA 404 (439)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCH--HHHHHHHHT
T ss_pred EeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHhc
Confidence 77778888888888776653 469999999999999999998888888877766666665 443221 123467899
Q ss_pred cCHHHHHHHHHhhcCCCCeEEEEEc
Q 015795 241 LNSTLLEEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 241 it~~~l~~f~~~~~~~~~~~l~vvG 265 (400)
+|.+|+.++.++++. ++++++++|
T Consensus 405 vt~~dv~~~a~~~~~-~~~~~~v~g 428 (439)
T 1pp9_B 405 VADADVINAAKKFVS-GRKSMAASG 428 (439)
T ss_dssp CCHHHHHHHHHHHHH-SCEEEEEEE
T ss_pred CCHHHHHHHHHHHhc-CCceEEEEC
Confidence 999999999999988 899999999
No 33
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.73 E-value=0.00045 Score=66.94 Aligned_cols=141 Identities=11% Similarity=-0.030 Sum_probs=97.5
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHH-HHcCCeeEEEec-----c---ceEEEEEEecCC-CHHHHHHHHHHhhcC---CC
Q 015795 120 TTHLLERMAFRSTRNRSHLRIVREV-EAIGGNVQASAS-----R---EQMGYSFDALKT-YVPEMVELLIDCVRN---PV 186 (400)
Q Consensus 120 ~a~ll~~l~~~gt~~~s~~~l~~~l-~~~g~~~~~~~~-----~---~~~~~~~~~~~~-~l~~~l~ll~~~l~~---p~ 186 (400)
...++..++..|. ...|.+.+ +..|...+++++ . ..+.+.+.+.++ +.+++++.+.+.+.. -.
T Consensus 267 ~~~vl~~iLg~~~----~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g 342 (445)
T 3ami_A 267 ALEILAAVLDGYD----GARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKG 342 (445)
T ss_dssp HHHHHHHHHHSST----TCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCc----chHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4455666665442 23455554 356665555432 2 245566666666 488888887766653 34
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc
Q 015795 187 FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 187 f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG 265 (400)
+++++++++|+.++..+....+++...+.......+++.+... .....+.|+++|.+++.++.++++.+++++++++|
T Consensus 343 ~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~ 420 (445)
T 3ami_A 343 VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRD-DDRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLV 420 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTH-HHHHHHHHHTCCHHHHHHHHHTTSCSTTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHH-HHHHHHHHHcCCHHHHHHHHHHHcCcCCeEEEEEc
Confidence 9999999999999999998888888777666655554322211 01124678999999999999999999999999999
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.52 E-value=0.00048 Score=65.96 Aligned_cols=167 Identities=13% Similarity=0.041 Sum_probs=107.7
Q ss_pred EEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHH-HcCCeeEEEec----cceEEEEE
Q 015795 90 IASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGGNVQASAS----REQMGYSF 164 (400)
Q Consensus 90 v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~~~~~~~~----~~~~~~~~ 164 (400)
......+.+...+.+.+.++..... .......++..++..|. ...|.+.+. ..|..+++++. ...+.+.+
T Consensus 245 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~----~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~ 319 (425)
T 3d3y_A 245 ERTEREVLAQSKLNLAYNTDIYYGD-SYYFALQVFNGIFGGFP----HSKLFMNVREKEHLAYYASSSIDTFRGFMTVQT 319 (425)
T ss_dssp EEEEEEECSSEEEEEEEECCCCTTS-TTHHHHHHHHHHHTTST----TSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEE
T ss_pred eEEecCCccccEEEEEeecCCCCCC-chHHHHHHHHHHhCCCh----hhHHHHHHHHhcCeEEEEeccccccCceEEEEE
Confidence 3333334455666666666422222 23455667777775432 234555564 34655544432 24566777
Q ss_pred EecCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCChHhhcc
Q 015795 165 DALKTYVPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINR 240 (400)
Q Consensus 165 ~~~~~~l~~~l~ll~~~l~---~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~~l~~ 240 (400)
.+.+++++++++.+.+.+. +-.++++++++.|..++..+....+++...+.......++ +.+.. .....+.|++
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~~ 397 (425)
T 3d3y_A 320 GIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLT--AEEWIARINA 397 (425)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCCC--HHHHHHHHHH
T ss_pred ecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHh
Confidence 7778888888888776554 3459999999999999999998888998877766666665 33321 1122467889
Q ss_pred cCHHHHHHHHHhhcCCCCeEEEEEc
Q 015795 241 LNSTLLEEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 241 it~~~l~~f~~~~~~~~~~~l~vvG 265 (400)
+|.+|+.++.++++ +++ .++++|
T Consensus 398 vt~edv~~~a~~~~-~~~-~~~v~g 420 (425)
T 3d3y_A 398 VTIPEIQEVAKRLE-LQA-IFFLEG 420 (425)
T ss_dssp CCHHHHHHHHHHCE-EEE-EEEEEE
T ss_pred CCHHHHHHHHHhcc-Cce-EEEEeC
Confidence 99999999999865 444 445555
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=97.19 E-value=0.0052 Score=60.39 Aligned_cols=164 Identities=10% Similarity=0.070 Sum_probs=97.5
Q ss_pred EeCCCCEEEEEEEEcccccCCCCCCCcH-----HHHHHHHHhccCCCCChHHHHHHHHH---cCCeeEEEe----ccceE
Q 015795 93 ETSVSPVASISLYVGCGSIYESPISFGT-----THLLERMAFRSTRNRSHLRIVREVEA---IGGNVQASA----SREQM 160 (400)
Q Consensus 93 ~~~~~~~~~i~l~~~~G~~~e~~~~~g~-----a~ll~~l~~~gt~~~s~~~l~~~l~~---~g~~~~~~~----~~~~~ 160 (400)
.+.+.+...+.+.+++.....++ ...+ ..++..+++. .+...+.. .|...+.+. .++..
T Consensus 260 ~~~~~~q~~v~l~~~~~~~~~~d-~~~l~~~~~~~v~~~iLg~--------~L~~~lre~~~~gl~y~~~s~~~~~~~~~ 330 (492)
T 3go9_A 260 MNEQAAQDTLSLMWDTPWHPIQD-SMALSRYWRSDLAREALFW--------HIKQVLEKNNQKNLKLGFDCRVQYQRAQC 330 (492)
T ss_dssp EESSCSSEEEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHSCCTTCEEEEEEEEETTEEEE
T ss_pred EcCCCCCcEEEEEecCCCCCccc-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhccccccccCchhhhhhcce
Confidence 34445555666666655443332 1111 2344455541 34444433 454444333 33455
Q ss_pred EEEEEecCCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHhcCCCCCCCCC
Q 015795 161 GYSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVS-----NNPQSLLLEAIHSAGYSGALANPLL 232 (400)
Q Consensus 161 ~~~~~~~~~~l~~~l~ll~~~l~~---p~f~~~~~~~~k~~~~~~l~~~~-----~~p~~~~~~~l~~~~~~~p~~~~~~ 232 (400)
.+.+.+..++.+++++.+.+.+.. -.|+++|+++.|..++..+.... .+....+.+.+........+..+..
T Consensus 331 ~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 410 (492)
T 3go9_A 331 AIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQ 410 (492)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHH
T ss_pred EEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHH
Confidence 677788888999988888777654 35999999999999999987543 2345455444444433333333210
Q ss_pred --CC-hHhhcccCHHHHHHHHHhhcCCCCeEEEEEc
Q 015795 233 --AP-ESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (400)
Q Consensus 233 --~~-~~~l~~it~~~l~~f~~~~~~~~~~~l~vvG 265 (400)
.. .+.|+++|.+++.++.++++.+++..+++.+
T Consensus 411 ~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~ 446 (492)
T 3go9_A 411 YQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQP 446 (492)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcC
Confidence 01 1348899999999999999997655444444
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=48.99 E-value=8 Score=35.13 Aligned_cols=75 Identities=8% Similarity=0.027 Sum_probs=50.7
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCCCCCChHhhc
Q 015795 160 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAIN 239 (400)
Q Consensus 160 ~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~l~ 239 (400)
+.+.+.+. +.+.+.+.+.+.+.++ +++++++++|+.++..+....+++ +.+.. . .|+
T Consensus 269 ~~i~~~~~--~~~~~~~~i~~~l~~~-~t~~el~~ak~~~~~~~~~~~~~~-------------~~~~~------~-~i~ 325 (352)
T 3cx5_B 269 FTLFVRDQ--DSAVVSSNIKKIVADL-KKGKDLSPAINYTKLKNAVQNESV-------------SSPIE------L-NFD 325 (352)
T ss_dssp EEEEEEES--CHHHHHHHHHHHHHHH-HSCEECGGGHHHHHHHHHHHCCST-------------TCCCC------S-CGG
T ss_pred EEEEEEeC--CHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhhhhcc-------------CCccc------e-eee
Confidence 34444443 6777877777777654 888999999999988888665552 11111 1 477
Q ss_pred ccCHHHHHHHHHhhcCCCCeEEEEEc-CC
Q 015795 240 RLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (400)
Q Consensus 240 ~it~~~l~~f~~~~~~~~~~~l~vvG-v~ 267 (400)
++|.+ + + ++++++++| ++
T Consensus 326 ~vt~~-------~-~--~~~~~~~~G~~~ 344 (352)
T 3cx5_B 326 AVKDF-------K-L--GKFNYVAVGDVS 344 (352)
T ss_dssp GCCEE-------C-C--CSCEEEEEESGG
T ss_pred eeeHh-------h-c--CCceEEEEcccc
Confidence 77722 2 4 899999999 65
No 37
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=23.38 E-value=1.1e+02 Score=22.60 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHcCCeeEEEeccceEEEEEEecC---CCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 015795 134 NRSHLRIVREVEAIGGNVQASASREQMGYSFDALK---TYVPEMVELLIDCVRNPVFLDWEVNEQL 196 (400)
Q Consensus 134 ~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~---~~l~~~l~ll~~~l~~p~f~~~~~~~~k 196 (400)
.+++.++.+.++.+|+.+..+++.....+-+ +.. ..+..+-++ -=|.+++++|....
T Consensus 46 ~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~-G~~~g~sK~~kA~~l-----gI~Ii~E~~f~~ll 105 (109)
T 2k6g_A 46 SIERDEAKSLIERYGGKVTGNVSKKTNYLVM-GRDSGQSKSDKAAAL-----GTKIIDEDGLLNLI 105 (109)
T ss_dssp SCCHHHHHHHHHHTTCEEESSCCTTCCEEEE-CBCCCHHHHHHHHHH-----TCEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCEeeCcccCCceEEEE-CCCCChHHHHHHHHc-----CCeEEeHHHHHHHH
Confidence 3578999999999999999988875433222 222 234444443 34567777775544
No 38
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.76 E-value=1.5e+02 Score=18.11 Aligned_cols=20 Identities=5% Similarity=-0.059 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 015795 187 FLDWEVNEQLTKVKSEISEV 206 (400)
Q Consensus 187 f~~~~~~~~k~~~~~~l~~~ 206 (400)
.+..++++.|+.++.+....
T Consensus 4 ~~~~dle~~KqEIL~E~RkE 23 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKKE 23 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776643
No 39
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=20.62 E-value=2e+02 Score=19.24 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCeeEEEeccceEEEEEEecCCCHHHHHHHHHHhhc
Q 015795 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVR 183 (400)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~ 183 (400)
..+...++..|+.+.-..-.+...+.+..+.++.+.+.+.|.+.-.
T Consensus 20 g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~ 65 (76)
T 3lh2_S 20 TGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSG 65 (76)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHHhC
Confidence 4577888889988776666677899999999999998888887654
No 40
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=20.57 E-value=85 Score=22.40 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=42.4
Q ss_pred hccCCCCChHHHHHHHHHcCCeeEEEeccceEE-EEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 015795 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMG-YSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL 196 (400)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k 196 (400)
+.|+-..++.++.+.++.+|+.+..+++..... +.+......+..+.++ -=|.+++++|-...
T Consensus 15 ~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~l-----gI~Ii~E~~f~~~l 78 (92)
T 1l7b_A 15 ITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARAL-----GVPTLTEEELYRLL 78 (92)
T ss_dssp CSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCS-----SSCCEEHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHc-----CCcEEeHHHHHHHH
Confidence 456554589999999999999999888764322 3333344566666554 44667777775554
Done!