Query 015796
Match_columns 400
No_of_seqs 159 out of 1413
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1157 FliI Flagellar biosynt 100.0 3E-110 6E-115 828.5 34.0 362 10-400 14-377 (441)
2 TIGR01040 V-ATPase_V1_B V-type 100.0 4E-109 9E-114 840.0 39.0 378 20-400 1-378 (466)
3 TIGR01041 ATP_syn_B_arch ATP s 100.0 1E-108 2E-113 844.4 40.4 369 20-400 1-369 (458)
4 PRK04196 V-type ATP synthase s 100.0 1E-108 3E-113 846.1 40.7 370 19-400 2-371 (460)
5 TIGR03324 alt_F1F0_F1_al alter 100.0 3E-104 7E-109 812.9 38.4 355 18-400 25-382 (497)
6 PRK09281 F0F1 ATP synthase sub 100.0 3E-103 8E-108 811.5 38.1 355 18-400 25-382 (502)
7 CHL00059 atpA ATP synthase CF1 100.0 2E-102 4E-107 797.1 36.8 355 18-400 4-361 (485)
8 PRK09280 F0F1 ATP synthase sub 100.0 3E-102 7E-107 794.2 37.8 359 20-400 2-363 (463)
9 PRK13343 F0F1 ATP synthase sub 100.0 3E-102 6E-107 801.1 37.9 355 18-400 25-382 (502)
10 TIGR00962 atpA proton transloc 100.0 4E-102 8E-107 803.7 37.4 355 18-400 24-381 (501)
11 PRK08972 fliI flagellum-specif 100.0 1E-101 3E-106 784.1 38.5 366 6-399 12-377 (444)
12 TIGR01039 atpD ATP synthase, F 100.0 2E-101 3E-106 786.8 37.1 357 21-400 2-362 (461)
13 PRK06936 type III secretion sy 100.0 4E-101 8E-106 782.6 38.8 358 14-400 17-376 (439)
14 PRK02118 V-type ATP synthase s 100.0 3E-101 7E-106 780.6 37.5 350 18-400 2-352 (436)
15 PTZ00185 ATPase alpha subunit; 100.0 7E-101 2E-105 782.6 39.0 367 18-400 37-417 (574)
16 PRK12597 F0F1 ATP synthase sub 100.0 4E-101 8E-106 788.6 36.8 357 20-400 2-362 (461)
17 PRK07165 F0F1 ATP synthase sub 100.0 8E-101 2E-105 787.1 37.2 348 23-399 4-357 (507)
18 TIGR01043 ATP_syn_A_arch ATP s 100.0 5E-101 1E-105 797.8 35.1 355 21-399 1-456 (578)
19 CHL00060 atpB ATP synthase CF1 100.0 2E-100 5E-105 782.7 37.8 358 18-400 13-387 (494)
20 PRK08927 fliI flagellum-specif 100.0 5E-100 1E-104 775.1 39.3 360 14-399 11-373 (442)
21 TIGR03305 alt_F1F0_F1_bet alte 100.0 2E-100 5E-105 778.5 36.8 355 22-400 1-357 (449)
22 PRK04192 V-type ATP synthase s 100.0 3E-99 6E-104 785.4 35.2 357 20-400 3-460 (586)
23 TIGR01042 V-ATPase_V1_A V-type 100.0 2.2E-99 5E-104 782.1 33.1 355 20-399 1-461 (591)
24 PRK05688 fliI flagellum-specif 100.0 3.1E-98 7E-103 763.5 37.8 363 11-399 18-383 (451)
25 PRK09099 type III secretion sy 100.0 3.4E-98 7E-103 763.8 38.1 362 11-400 15-377 (441)
26 TIGR03496 FliI_clade1 flagella 100.0 7.7E-97 2E-101 750.5 37.9 352 22-399 1-352 (411)
27 TIGR03498 FliI_clade3 flagella 100.0 9.7E-97 2E-101 750.0 36.9 352 22-399 1-355 (418)
28 PRK06820 type III secretion sy 100.0 1.2E-95 3E-100 744.1 38.3 351 17-399 26-376 (440)
29 PRK08472 fliI flagellum-specif 100.0 6.9E-96 2E-100 744.7 35.8 363 9-400 7-371 (434)
30 PRK07960 fliI flagellum-specif 100.0 6.7E-96 1E-100 744.4 35.4 363 11-399 18-390 (455)
31 PRK07594 type III secretion sy 100.0 1.3E-95 3E-100 742.6 37.0 355 14-400 15-369 (433)
32 TIGR03497 FliI_clade2 flagella 100.0 2.3E-95 5E-100 740.2 38.2 350 22-400 1-351 (413)
33 PRK05922 type III secretion sy 100.0 5.9E-95 1.3E-99 737.1 38.5 356 14-399 13-368 (434)
34 PRK07196 fliI flagellum-specif 100.0 5E-95 1.1E-99 738.5 36.8 369 4-400 1-370 (434)
35 PRK08149 ATP synthase SpaL; Va 100.0 7E-95 1.5E-99 736.2 37.4 356 17-400 3-365 (428)
36 cd01135 V_A-ATPase_B V/A-type 100.0 1.1E-93 2.5E-98 688.5 27.4 275 92-379 1-276 (276)
37 PRK06002 fliI flagellum-specif 100.0 1.8E-92 3.8E-97 720.2 37.5 362 10-400 16-380 (450)
38 TIGR02546 III_secr_ATP type II 100.0 2.5E-92 5.5E-97 721.1 36.6 356 17-400 2-359 (422)
39 TIGR01026 fliI_yscN ATPase Fli 100.0 5.4E-92 1.2E-96 720.5 36.5 368 5-400 8-377 (440)
40 cd01132 F1_ATPase_alpha F1 ATP 100.0 5.6E-91 1.2E-95 669.9 27.2 270 93-380 2-274 (274)
41 cd01133 F1-ATPase_beta F1 ATP 100.0 2.1E-90 4.5E-95 667.2 27.3 273 92-382 1-274 (274)
42 COG0056 AtpA F0F1-type ATP syn 100.0 3.3E-90 7.1E-95 686.3 28.4 346 18-385 25-372 (504)
43 PRK06793 fliI flagellum-specif 100.0 6.6E-88 1.4E-92 685.9 35.5 355 13-400 14-369 (432)
44 COG1156 NtpB Archaeal/vacuolar 100.0 3.3E-88 7.1E-93 665.1 26.0 372 17-400 3-374 (463)
45 PRK07721 fliI flagellum-specif 100.0 6.1E-87 1.3E-91 682.9 35.7 359 12-399 10-371 (438)
46 PRK06315 type III secretion sy 100.0 2E-86 4.4E-91 676.7 33.7 359 13-399 16-378 (442)
47 KOG1351 Vacuolar H+-ATPase V1 100.0 1E-85 2.3E-90 624.9 24.1 390 8-400 11-400 (489)
48 COG0055 AtpD F0F1-type ATP syn 100.0 2.5E-82 5.4E-87 618.6 25.7 358 20-399 2-365 (468)
49 cd01134 V_A-ATPase_A V/A-type 100.0 1.2E-82 2.7E-87 626.7 23.5 235 125-379 123-369 (369)
50 cd01136 ATPase_flagellum-secre 100.0 1.6E-81 3.4E-86 620.4 25.8 283 92-400 1-283 (326)
51 PRK14698 V-type ATP synthase s 100.0 1.3E-80 2.9E-85 683.6 31.3 196 203-399 681-890 (1017)
52 COG1155 NtpA Archaeal/vacuolar 100.0 8.6E-73 1.9E-77 569.8 18.4 339 21-383 2-440 (588)
53 KOG1350 F0F1-type ATP synthase 100.0 1.7E-72 3.7E-77 539.3 16.3 360 16-399 47-415 (521)
54 KOG1352 Vacuolar H+-ATPase V1 100.0 4.9E-73 1.1E-77 554.1 10.7 356 4-383 4-463 (618)
55 PF00006 ATP-synt_ab: ATP synt 100.0 1.3E-71 2.8E-76 522.1 18.1 213 146-377 1-215 (215)
56 PRK12608 transcription termina 100.0 3.9E-68 8.4E-73 529.9 23.7 288 75-399 55-344 (380)
57 PRK09376 rho transcription ter 100.0 7.4E-61 1.6E-65 478.5 25.4 265 102-399 113-380 (416)
58 PRK12678 transcription termina 100.0 1.4E-60 3E-65 491.1 23.1 237 129-399 384-627 (672)
59 TIGR00767 rho transcription te 100.0 4.7E-54 1E-58 431.4 21.9 229 142-399 150-379 (415)
60 cd01128 rho_factor Transcripti 100.0 6.6E-50 1.4E-54 383.3 19.9 223 147-398 3-226 (249)
61 KOG1353 F0F1-type ATP synthase 100.0 4.2E-39 9.1E-44 300.7 7.7 254 18-386 18-273 (340)
62 COG1158 Rho Transcription term 100.0 1.4E-37 3.1E-42 300.7 15.0 215 148-386 161-376 (422)
63 cd01120 RecA-like_NTPases RecA 99.1 4.7E-09 1E-13 91.6 16.6 160 163-359 2-165 (165)
64 PF02874 ATP-synt_ab_N: ATP sy 98.8 3E-08 6.5E-13 76.5 7.7 66 24-90 1-69 (69)
65 COG0467 RAD55 RecA-superfamily 97.9 0.0002 4.3E-09 69.0 13.4 184 142-366 3-200 (260)
66 PF06745 KaiC: KaiC; InterPro 97.8 0.00015 3.2E-09 68.2 10.3 173 145-360 2-186 (226)
67 cd01394 radB RadB. The archaea 97.7 0.00011 2.3E-09 68.7 8.4 41 144-184 1-43 (218)
68 smart00382 AAA ATPases associa 97.7 9.6E-05 2.1E-09 61.4 6.4 99 159-290 1-99 (148)
69 PRK09302 circadian clock prote 97.6 0.00097 2.1E-08 70.6 13.4 175 140-361 251-436 (509)
70 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.0021 4.5E-08 62.3 14.3 41 144-184 4-60 (259)
71 PRK09361 radB DNA repair and r 97.4 0.00052 1.1E-08 64.5 8.2 44 141-184 2-47 (225)
72 PRK06067 flagellar accessory p 97.4 0.00074 1.6E-08 63.9 9.2 61 141-217 4-66 (234)
73 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00074 1.6E-08 63.5 9.2 123 144-283 1-129 (235)
74 cd01393 recA_like RecA is a b 97.3 0.0011 2.4E-08 61.9 8.9 41 144-184 1-43 (226)
75 PLN03187 meiotic recombination 97.3 0.0013 2.9E-08 66.4 9.9 127 140-284 104-236 (344)
76 TIGR02236 recomb_radA DNA repa 97.2 0.0014 3E-08 64.9 9.3 126 142-284 75-207 (310)
77 TIGR02012 tigrfam_recA protein 97.2 0.00068 1.5E-08 67.8 7.0 110 142-283 34-147 (321)
78 PRK09354 recA recombinase A; P 97.2 0.00073 1.6E-08 68.2 7.1 111 141-283 38-152 (349)
79 TIGR02655 circ_KaiC circadian 97.2 0.0048 1E-07 65.1 13.1 189 139-375 240-440 (484)
80 TIGR00416 sms DNA repair prote 97.1 0.0039 8.5E-08 65.3 11.5 44 141-184 73-118 (454)
81 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0036 7.9E-08 59.6 10.3 60 143-218 2-63 (237)
82 cd00983 recA RecA is a bacter 97.1 0.00085 1.9E-08 67.2 6.0 111 141-283 33-147 (325)
83 TIGR03881 KaiC_arch_4 KaiC dom 97.1 0.0075 1.6E-07 56.7 12.2 59 144-218 2-62 (229)
84 PRK04328 hypothetical protein; 97.1 0.0023 4.9E-08 61.6 8.6 61 143-219 4-66 (249)
85 TIGR02655 circ_KaiC circadian 96.9 0.0076 1.7E-07 63.6 11.7 62 143-219 2-65 (484)
86 TIGR02238 recomb_DMC1 meiotic 96.9 0.0037 8E-08 62.4 8.2 127 140-284 74-206 (313)
87 PRK08533 flagellar accessory p 96.8 0.032 6.8E-07 53.1 13.9 59 144-218 6-66 (230)
88 PLN03186 DNA repair protein RA 96.8 0.0058 1.3E-07 61.7 9.0 126 141-284 102-233 (342)
89 PRK09302 circadian clock prote 96.8 0.017 3.7E-07 61.2 12.9 63 142-219 11-75 (509)
90 PTZ00035 Rad51 protein; Provis 96.7 0.006 1.3E-07 61.5 8.4 127 139-283 95-227 (337)
91 PRK09519 recA DNA recombinatio 96.6 0.0049 1.1E-07 68.2 7.7 110 142-283 39-152 (790)
92 TIGR02237 recomb_radB DNA repa 96.6 0.013 2.9E-07 54.1 9.4 103 157-284 9-112 (209)
93 PRK04301 radA DNA repair and r 96.6 0.012 2.6E-07 58.5 9.5 126 142-284 82-213 (317)
94 cd01121 Sms Sms (bacterial rad 96.5 0.031 6.7E-07 57.2 12.2 44 141-184 61-106 (372)
95 PF08423 Rad51: Rad51; InterP 96.5 0.018 3.9E-07 55.8 9.7 128 140-285 16-149 (256)
96 cd01122 GP4d_helicase GP4d_hel 96.4 0.059 1.3E-06 51.9 13.2 44 141-184 10-54 (271)
97 PRK11823 DNA repair protein Ra 96.3 0.051 1.1E-06 56.9 12.7 43 142-184 60-104 (446)
98 TIGR02239 recomb_RAD51 DNA rep 96.3 0.019 4.1E-07 57.4 9.1 125 141-283 75-205 (316)
99 TIGR03880 KaiC_arch_3 KaiC dom 96.3 0.1 2.2E-06 48.9 13.4 56 147-218 1-58 (224)
100 cd01124 KaiC KaiC is a circadi 96.1 0.15 3.2E-06 45.9 13.4 41 163-219 2-42 (187)
101 cd00009 AAA The AAA+ (ATPases 96.1 0.15 3.2E-06 42.5 12.2 26 159-184 18-43 (151)
102 COG2256 MGS1 ATPase related to 96.0 0.032 6.9E-07 57.1 8.9 32 256-288 92-123 (436)
103 PRK05800 cobU adenosylcobinami 95.7 0.019 4.2E-07 52.2 5.7 87 162-286 3-93 (170)
104 PF05496 RuvB_N: Holliday junc 95.7 0.025 5.3E-07 54.0 6.4 23 163-185 53-75 (233)
105 cd00544 CobU Adenosylcobinamid 95.7 0.03 6.6E-07 50.9 6.7 86 163-286 2-90 (169)
106 COG0563 Adk Adenylate kinase a 95.7 0.032 7E-07 51.2 6.9 101 162-294 2-102 (178)
107 PF13173 AAA_14: AAA domain 95.5 0.048 1E-06 46.6 7.1 24 160-183 2-25 (128)
108 COG1116 TauB ABC-type nitrate/ 95.5 0.012 2.5E-07 56.7 3.5 35 148-182 16-51 (248)
109 COG4619 ABC-type uncharacteriz 95.5 0.012 2.6E-07 53.9 3.2 37 146-182 14-51 (223)
110 cd00820 PEPCK_HprK Phosphoenol 95.5 0.019 4E-07 48.5 4.1 33 149-181 3-36 (107)
111 PF13401 AAA_22: AAA domain; P 95.4 0.049 1.1E-06 45.9 6.7 93 161-282 5-100 (131)
112 PF00004 AAA: ATPase family as 95.4 0.08 1.7E-06 44.3 8.0 23 163-185 1-23 (132)
113 COG1124 DppF ABC-type dipeptid 95.4 0.014 3.1E-07 55.9 3.6 34 149-182 21-55 (252)
114 PF05729 NACHT: NACHT domain 95.2 0.086 1.9E-06 45.8 7.8 23 163-185 3-25 (166)
115 cd03254 ABCC_Glucan_exporter_l 95.2 0.019 4E-07 53.9 3.7 32 152-183 21-52 (229)
116 cd03222 ABC_RNaseL_inhibitor T 95.1 0.021 4.5E-07 52.3 3.7 35 149-183 14-48 (177)
117 TIGR01166 cbiO cobalt transpor 95.1 0.02 4.4E-07 52.2 3.7 30 153-182 11-40 (190)
118 cd03260 ABC_PstB_phosphate_tra 95.1 0.023 4.9E-07 53.3 3.9 32 152-183 18-49 (227)
119 cd03269 ABC_putative_ATPase Th 95.1 0.023 4.9E-07 52.7 3.9 32 152-183 18-49 (210)
120 PF00931 NB-ARC: NB-ARC domain 95.0 0.036 7.8E-07 53.4 5.2 94 159-282 18-114 (287)
121 cd03292 ABC_FtsE_transporter F 95.0 0.025 5.3E-07 52.5 3.9 32 152-183 19-50 (214)
122 TIGR02211 LolD_lipo_ex lipopro 95.0 0.024 5.2E-07 52.8 3.8 32 152-183 23-54 (221)
123 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.025 5.3E-07 52.7 3.8 31 153-183 23-53 (218)
124 cd03224 ABC_TM1139_LivF_branch 95.0 0.023 5E-07 52.9 3.6 31 152-182 18-48 (222)
125 cd03225 ABC_cobalt_CbiO_domain 94.9 0.025 5.3E-07 52.4 3.7 31 152-182 19-49 (211)
126 cd03265 ABC_DrrA DrrA is the A 94.9 0.024 5.3E-07 52.9 3.7 31 152-182 18-48 (220)
127 cd03229 ABC_Class3 This class 94.9 0.027 5.9E-07 51.0 3.9 29 154-182 20-48 (178)
128 TIGR03608 L_ocin_972_ABC putat 94.9 0.025 5.4E-07 52.1 3.7 31 152-182 16-46 (206)
129 TIGR00960 3a0501s02 Type II (G 94.9 0.026 5.7E-07 52.5 3.8 31 152-182 21-51 (216)
130 PF00005 ABC_tran: ABC transpo 94.9 0.026 5.7E-07 48.2 3.5 30 154-183 5-34 (137)
131 TIGR03410 urea_trans_UrtE urea 94.9 0.024 5.3E-07 53.2 3.5 31 152-182 18-48 (230)
132 PRK13540 cytochrome c biogenes 94.8 0.028 6.1E-07 51.8 3.8 31 152-182 19-49 (200)
133 PF00154 RecA: recA bacterial 94.8 0.07 1.5E-06 53.5 6.8 109 141-281 31-143 (322)
134 TIGR02315 ABC_phnC phosphonate 94.8 0.025 5.4E-07 53.6 3.5 30 153-182 21-50 (243)
135 COG3842 PotA ABC-type spermidi 94.8 0.028 6.2E-07 56.9 4.0 42 140-182 11-53 (352)
136 cd03226 ABC_cobalt_CbiO_domain 94.8 0.029 6.2E-07 51.8 3.7 31 153-183 19-49 (205)
137 cd03298 ABC_ThiQ_thiamine_tran 94.8 0.032 6.9E-07 51.7 4.1 33 151-183 15-47 (211)
138 cd03296 ABC_CysA_sulfate_impor 94.8 0.028 6.1E-07 53.2 3.8 32 152-183 20-51 (239)
139 cd03238 ABC_UvrA The excision 94.8 0.028 6.1E-07 51.4 3.6 35 148-182 8-43 (176)
140 cd03256 ABC_PhnC_transporter A 94.8 0.027 5.8E-07 53.2 3.6 30 153-182 20-49 (241)
141 PRK11124 artP arginine transpo 94.8 0.028 6.2E-07 53.2 3.7 30 153-182 21-50 (242)
142 cd03216 ABC_Carb_Monos_I This 94.7 0.033 7.1E-07 49.9 3.8 31 153-183 19-49 (163)
143 cd03247 ABCC_cytochrome_bd The 94.7 0.033 7.2E-07 50.4 3.9 32 152-183 20-51 (178)
144 cd03262 ABC_HisP_GlnQ_permease 94.7 0.028 6.2E-07 52.0 3.5 30 153-182 19-48 (213)
145 cd03261 ABC_Org_Solvent_Resist 94.7 0.031 6.7E-07 52.8 3.8 33 150-182 15-48 (235)
146 PRK13539 cytochrome c biogenes 94.7 0.03 6.6E-07 51.9 3.7 32 152-183 20-51 (207)
147 PRK00411 cdc6 cell division co 94.7 0.25 5.4E-06 50.1 10.6 96 158-282 53-151 (394)
148 TIGR03864 PQQ_ABC_ATP ABC tran 94.7 0.032 7E-07 52.7 3.8 30 153-182 20-49 (236)
149 cd03266 ABC_NatA_sodium_export 94.7 0.032 6.9E-07 51.9 3.7 31 152-182 23-53 (218)
150 cd03259 ABC_Carb_Solutes_like 94.6 0.032 6.9E-07 51.8 3.6 30 153-182 19-48 (213)
151 PRK14247 phosphate ABC transpo 94.6 0.03 6.4E-07 53.4 3.5 32 152-183 21-52 (250)
152 cd03251 ABCC_MsbA MsbA is an e 94.6 0.034 7.3E-07 52.3 3.8 32 152-183 20-51 (234)
153 PRK14274 phosphate ABC transpo 94.6 0.034 7.3E-07 53.4 3.9 32 152-183 30-61 (259)
154 cd03257 ABC_NikE_OppD_transpor 94.6 0.029 6.3E-07 52.4 3.4 32 152-183 23-54 (228)
155 cd03218 ABC_YhbG The ABC trans 94.6 0.03 6.6E-07 52.6 3.5 30 153-182 19-48 (232)
156 PRK14240 phosphate transporter 94.6 0.031 6.8E-07 53.2 3.6 31 152-182 21-51 (250)
157 cd03230 ABC_DR_subfamily_A Thi 94.6 0.037 8E-07 49.9 3.8 31 153-183 19-49 (173)
158 cd03258 ABC_MetN_methionine_tr 94.6 0.032 7E-07 52.5 3.6 31 153-183 24-54 (233)
159 cd03301 ABC_MalK_N The N-termi 94.6 0.035 7.6E-07 51.5 3.7 32 152-183 18-49 (213)
160 cd03245 ABCC_bacteriocin_expor 94.6 0.035 7.5E-07 51.7 3.7 32 152-183 22-53 (220)
161 cd03235 ABC_Metallic_Cations A 94.6 0.03 6.5E-07 52.0 3.3 30 153-182 18-47 (213)
162 PRK11248 tauB taurine transpor 94.6 0.035 7.6E-07 53.4 3.8 32 152-183 19-50 (255)
163 PRK09183 transposase/IS protei 94.6 0.058 1.2E-06 52.3 5.3 28 157-184 99-126 (259)
164 PRK11701 phnK phosphonate C-P 94.5 0.035 7.6E-07 53.2 3.8 32 152-183 24-55 (258)
165 cd03219 ABC_Mj1267_LivG_branch 94.5 0.03 6.5E-07 52.8 3.3 30 153-182 19-48 (236)
166 TIGR01978 sufC FeS assembly AT 94.5 0.031 6.7E-07 52.8 3.3 32 152-183 18-49 (243)
167 cd03295 ABC_OpuCA_Osmoprotecti 94.5 0.037 8.1E-07 52.5 3.9 30 153-182 20-49 (242)
168 cd03252 ABCC_Hemolysin The ABC 94.5 0.035 7.6E-07 52.4 3.7 32 152-183 20-51 (237)
169 cd03215 ABC_Carb_Monos_II This 94.5 0.036 7.8E-07 50.4 3.6 32 152-183 18-49 (182)
170 cd03293 ABC_NrtD_SsuB_transpor 94.5 0.035 7.7E-07 51.8 3.7 31 153-183 23-53 (220)
171 PRK14267 phosphate ABC transpo 94.5 0.034 7.3E-07 53.1 3.5 32 152-183 22-53 (253)
172 PRK10584 putative ABC transpor 94.5 0.036 7.7E-07 52.0 3.6 32 152-183 28-59 (228)
173 cd03268 ABC_BcrA_bacitracin_re 94.5 0.038 8.3E-07 51.1 3.8 32 152-183 18-49 (208)
174 TIGR02770 nickel_nikD nickel i 94.5 0.035 7.6E-07 52.3 3.6 31 153-183 5-35 (230)
175 cd03223 ABCD_peroxisomal_ALDP 94.5 0.037 8E-07 49.7 3.5 32 152-183 19-50 (166)
176 PF13207 AAA_17: AAA domain; P 94.5 0.034 7.3E-07 46.5 3.1 24 162-185 1-24 (121)
177 PRK13543 cytochrome c biogenes 94.4 0.037 8E-07 51.6 3.6 31 152-182 29-59 (214)
178 PRK15177 Vi polysaccharide exp 94.4 0.038 8.3E-07 51.7 3.7 31 152-182 5-35 (213)
179 PRK10895 lipopolysaccharide AB 94.4 0.038 8.3E-07 52.3 3.8 32 152-183 21-52 (241)
180 cd03231 ABC_CcmA_heme_exporter 94.4 0.037 8E-07 51.1 3.5 32 152-183 18-49 (201)
181 PRK09493 glnQ glutamine ABC tr 94.4 0.038 8.3E-07 52.3 3.7 31 152-182 19-49 (240)
182 PRK14250 phosphate ABC transpo 94.4 0.038 8.3E-07 52.5 3.8 32 152-183 21-52 (241)
183 TIGR03005 ectoine_ehuA ectoine 94.4 0.039 8.4E-07 52.7 3.8 31 152-182 18-48 (252)
184 COG4608 AppF ABC-type oligopep 94.4 0.042 9E-07 53.5 3.9 38 148-185 26-64 (268)
185 PRK11264 putative amino-acid A 94.4 0.037 8E-07 52.7 3.6 31 152-182 21-51 (250)
186 PRK13541 cytochrome c biogenes 94.4 0.053 1.1E-06 49.8 4.5 34 150-183 16-49 (195)
187 COG0194 Gmk Guanylate kinase [ 94.4 0.1 2.2E-06 48.3 6.2 88 159-276 3-101 (191)
188 PRK11144 modC molybdate transp 94.4 0.047 1E-06 55.2 4.5 34 150-183 14-47 (352)
189 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.4 0.039 8.4E-07 52.1 3.7 34 150-183 18-52 (238)
190 PRK14241 phosphate transporter 94.4 0.04 8.6E-07 52.9 3.8 32 152-183 22-53 (258)
191 PRK11629 lolD lipoprotein tran 94.4 0.042 9E-07 51.9 3.9 31 152-182 27-57 (233)
192 cd03246 ABCC_Protease_Secretio 94.4 0.046 9.9E-07 49.3 3.9 31 153-183 21-51 (173)
193 PRK10575 iron-hydroxamate tran 94.4 0.036 7.8E-07 53.5 3.5 31 152-182 29-59 (265)
194 TIGR03411 urea_trans_UrtD urea 94.4 0.04 8.8E-07 52.1 3.7 31 152-182 20-50 (242)
195 cd03290 ABCC_SUR1_N The SUR do 94.4 0.042 9.2E-07 51.2 3.8 30 154-183 21-50 (218)
196 PRK11247 ssuB aliphatic sulfon 94.4 0.041 8.9E-07 53.1 3.8 32 152-183 30-61 (257)
197 TIGR02673 FtsE cell division A 94.4 0.04 8.7E-07 51.1 3.6 30 153-182 21-50 (214)
198 TIGR01188 drrA daunorubicin re 94.3 0.04 8.6E-07 54.4 3.8 33 150-182 8-41 (302)
199 cd03250 ABCC_MRP_domain1 Domai 94.3 0.043 9.4E-07 50.6 3.8 32 152-183 23-54 (204)
200 PRK10851 sulfate/thiosulfate t 94.3 0.041 9E-07 55.7 3.9 35 149-183 16-51 (353)
201 PRK14255 phosphate ABC transpo 94.3 0.039 8.4E-07 52.7 3.5 30 153-182 24-53 (252)
202 PRK10771 thiQ thiamine transpo 94.3 0.042 9.1E-07 51.8 3.7 32 152-183 17-48 (232)
203 cd03263 ABC_subfamily_A The AB 94.3 0.043 9.2E-07 51.1 3.7 32 152-183 20-51 (220)
204 PRK11831 putative ABC transpor 94.3 0.043 9.3E-07 53.1 3.8 32 152-183 25-56 (269)
205 PRK15056 manganese/iron transp 94.3 0.043 9.3E-07 53.2 3.8 32 152-183 25-56 (272)
206 PRK10247 putative ABC transpor 94.3 0.042 9.1E-07 51.7 3.6 31 152-182 25-55 (225)
207 cd03233 ABC_PDR_domain1 The pl 94.3 0.041 8.8E-07 51.0 3.4 32 152-183 25-56 (202)
208 PRK14242 phosphate transporter 94.3 0.044 9.5E-07 52.3 3.8 31 153-183 25-55 (253)
209 TIGR02323 CP_lyasePhnK phospho 94.3 0.04 8.7E-07 52.6 3.5 32 152-183 21-52 (253)
210 PRK14273 phosphate ABC transpo 94.2 0.042 9E-07 52.6 3.6 31 153-183 26-56 (254)
211 PRK09544 znuC high-affinity zi 94.2 0.046 1E-06 52.5 3.9 32 152-183 22-53 (251)
212 PRK14237 phosphate transporter 94.2 0.047 1E-06 52.8 3.9 31 153-183 39-69 (267)
213 PF04665 Pox_A32: Poxvirus A32 94.2 0.19 4.2E-06 48.4 8.0 22 162-183 15-36 (241)
214 TIGR03265 PhnT2 putative 2-ami 94.2 0.045 9.7E-07 55.5 3.9 32 152-183 22-53 (353)
215 PRK14262 phosphate ABC transpo 94.2 0.046 9.9E-07 52.1 3.8 31 152-182 21-51 (250)
216 PRK10908 cell division protein 94.2 0.047 1E-06 51.1 3.8 31 153-183 21-51 (222)
217 PRK14248 phosphate ABC transpo 94.2 0.045 9.7E-07 52.9 3.7 30 153-182 40-69 (268)
218 TIGR01184 ntrCD nitrate transp 94.2 0.046 9.9E-07 51.7 3.7 30 154-183 5-34 (230)
219 PRK13548 hmuV hemin importer A 94.2 0.045 9.8E-07 52.7 3.7 31 153-183 21-51 (258)
220 cd03267 ABC_NatA_like Similar 94.2 0.046 9.9E-07 51.9 3.7 32 152-183 39-70 (236)
221 TIGR00972 3a0107s01c2 phosphat 94.2 0.046 9.9E-07 52.1 3.7 32 152-183 19-50 (247)
222 PRK11432 fbpC ferric transport 94.2 0.045 9.8E-07 55.4 3.8 34 149-182 20-54 (351)
223 PRK14239 phosphate transporter 94.2 0.047 1E-06 52.0 3.7 31 152-182 23-53 (252)
224 PRK10253 iron-enterobactin tra 94.1 0.041 8.8E-07 53.1 3.3 30 153-182 26-55 (265)
225 COG1125 OpuBA ABC-type proline 94.1 0.046 1E-06 53.1 3.6 38 147-184 13-51 (309)
226 TIGR02324 CP_lyasePhnL phospho 94.1 0.046 1E-06 51.1 3.6 31 152-182 26-56 (224)
227 PRK15093 antimicrobial peptide 94.1 0.047 1E-06 54.7 3.8 36 148-183 20-56 (330)
228 PRK13645 cbiO cobalt transport 94.1 0.048 1E-06 53.4 3.8 32 152-183 29-60 (289)
229 KOG2028 ATPase related to the 94.1 0.18 3.8E-06 51.4 7.7 23 163-185 165-187 (554)
230 PRK13649 cbiO cobalt transport 94.1 0.048 1E-06 53.0 3.8 32 152-183 25-56 (280)
231 TIGR01288 nodI ATP-binding ABC 94.1 0.047 1E-06 53.9 3.7 33 150-182 19-52 (303)
232 PRK11650 ugpC glycerol-3-phosp 94.1 0.046 1E-06 55.5 3.8 32 152-183 22-53 (356)
233 PRK13538 cytochrome c biogenes 94.1 0.047 1E-06 50.5 3.5 32 152-183 19-50 (204)
234 PRK14244 phosphate ABC transpo 94.1 0.051 1.1E-06 51.8 3.8 32 152-183 23-54 (251)
235 PRK13648 cbiO cobalt transport 94.1 0.051 1.1E-06 52.6 3.9 32 152-183 27-58 (269)
236 cd03214 ABC_Iron-Siderophores_ 94.1 0.054 1.2E-06 49.1 3.8 32 152-183 17-48 (180)
237 COG4167 SapF ABC-type antimicr 94.1 0.044 9.6E-07 50.9 3.2 33 150-182 28-61 (267)
238 PRK14266 phosphate ABC transpo 94.1 0.053 1.1E-06 51.7 3.9 31 152-182 21-51 (250)
239 PRK13641 cbiO cobalt transport 94.1 0.051 1.1E-06 53.2 3.9 32 152-183 25-56 (287)
240 cd03213 ABCG_EPDR ABCG transpo 94.1 0.048 1E-06 50.2 3.5 32 152-183 27-58 (194)
241 cd03248 ABCC_TAP TAP, the Tran 94.1 0.051 1.1E-06 50.9 3.7 31 153-183 33-63 (226)
242 cd03253 ABCC_ATM1_transporter 94.0 0.053 1.1E-06 51.1 3.8 32 152-183 19-50 (236)
243 PRK11300 livG leucine/isoleuci 94.0 0.049 1.1E-06 52.0 3.6 32 152-183 23-54 (255)
244 PRK10419 nikE nickel transport 94.0 0.048 1E-06 52.8 3.6 31 152-182 30-60 (268)
245 PRK13632 cbiO cobalt transport 94.0 0.052 1.1E-06 52.6 3.8 31 153-183 28-58 (271)
246 TIGR03740 galliderm_ABC gallid 94.0 0.054 1.2E-06 50.7 3.8 30 153-182 19-48 (223)
247 TIGR01189 ccmA heme ABC export 94.0 0.055 1.2E-06 49.7 3.8 30 153-182 19-48 (198)
248 PRK14245 phosphate ABC transpo 94.0 0.053 1.1E-06 51.7 3.8 31 152-182 21-51 (250)
249 PRK13638 cbiO cobalt transport 94.0 0.048 1E-06 52.8 3.5 31 152-182 19-49 (271)
250 PRK14256 phosphate ABC transpo 94.0 0.05 1.1E-06 52.0 3.6 31 153-183 23-53 (252)
251 cd03369 ABCC_NFT1 Domain 2 of 94.0 0.052 1.1E-06 50.2 3.6 32 152-183 26-57 (207)
252 COG3638 ABC-type phosphate/pho 94.0 0.064 1.4E-06 51.4 4.2 43 143-185 12-55 (258)
253 COG0444 DppD ABC-type dipeptid 94.0 0.063 1.4E-06 53.5 4.3 36 148-183 18-54 (316)
254 PRK14268 phosphate ABC transpo 94.0 0.055 1.2E-06 52.0 3.8 31 152-182 30-60 (258)
255 TIGR00968 3a0106s01 sulfate AB 94.0 0.056 1.2E-06 51.2 3.9 29 154-182 20-48 (237)
256 PRK10418 nikD nickel transport 94.0 0.052 1.1E-06 52.0 3.7 32 152-183 21-52 (254)
257 PRK14238 phosphate transporter 94.0 0.056 1.2E-06 52.4 3.9 32 152-183 42-73 (271)
258 PRK10744 pstB phosphate transp 94.0 0.053 1.1E-06 52.1 3.7 32 152-183 31-62 (260)
259 COG1134 TagH ABC-type polysacc 94.0 0.051 1.1E-06 52.2 3.5 35 148-182 40-75 (249)
260 PRK14243 phosphate transporter 94.0 0.051 1.1E-06 52.5 3.6 31 152-182 28-58 (264)
261 cd03217 ABC_FeS_Assembly ABC-t 94.0 0.048 1E-06 50.4 3.3 32 152-183 18-49 (200)
262 PF13671 AAA_33: AAA domain; P 93.9 0.63 1.4E-05 39.7 10.1 23 163-185 2-24 (143)
263 PRK14261 phosphate ABC transpo 93.9 0.056 1.2E-06 51.6 3.8 30 153-182 25-54 (253)
264 PRK14271 phosphate ABC transpo 93.9 0.056 1.2E-06 52.7 3.8 32 152-183 39-70 (276)
265 PRK08118 topology modulation p 93.9 0.05 1.1E-06 49.2 3.2 25 161-185 2-26 (167)
266 COG3839 MalK ABC-type sugar tr 93.9 0.052 1.1E-06 54.7 3.6 33 150-182 18-51 (338)
267 PRK14275 phosphate ABC transpo 93.9 0.057 1.2E-06 52.9 3.9 31 152-182 57-87 (286)
268 TIGR02769 nickel_nikE nickel i 93.9 0.051 1.1E-06 52.5 3.5 32 152-183 29-60 (265)
269 cd03294 ABC_Pro_Gly_Bertaine T 93.9 0.058 1.2E-06 52.3 3.8 31 152-182 42-72 (269)
270 PRK13646 cbiO cobalt transport 93.9 0.058 1.3E-06 52.8 3.8 32 152-183 25-56 (286)
271 PRK14269 phosphate ABC transpo 93.9 0.06 1.3E-06 51.3 3.9 32 152-183 20-51 (246)
272 PRK14272 phosphate ABC transpo 93.9 0.054 1.2E-06 51.6 3.5 31 153-183 23-53 (252)
273 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.9 0.06 1.3E-06 50.7 3.8 33 150-182 37-70 (224)
274 cd03234 ABCG_White The White s 93.9 0.054 1.2E-06 50.9 3.4 32 152-183 25-56 (226)
275 TIGR03015 pepcterm_ATPase puta 93.9 0.56 1.2E-05 44.7 10.6 24 161-184 44-67 (269)
276 PRK14253 phosphate ABC transpo 93.9 0.056 1.2E-06 51.5 3.6 31 153-183 22-52 (249)
277 PRK11614 livF leucine/isoleuci 93.8 0.055 1.2E-06 51.1 3.5 30 153-182 24-53 (237)
278 PRK11308 dppF dipeptide transp 93.8 0.058 1.3E-06 54.0 3.8 35 148-182 28-63 (327)
279 PRK09452 potA putrescine/sperm 93.8 0.058 1.2E-06 55.2 3.8 33 150-182 29-62 (375)
280 TIGR01277 thiQ thiamine ABC tr 93.8 0.064 1.4E-06 49.9 3.8 32 152-183 16-47 (213)
281 PRK13643 cbiO cobalt transport 93.8 0.059 1.3E-06 52.9 3.7 31 152-182 24-54 (288)
282 cd03228 ABCC_MRP_Like The MRP 93.8 0.067 1.4E-06 48.1 3.8 31 153-183 21-51 (171)
283 cd03264 ABC_drug_resistance_li 93.8 0.055 1.2E-06 50.1 3.4 30 152-182 18-47 (211)
284 PRK13547 hmuV hemin importer A 93.8 0.056 1.2E-06 52.7 3.5 31 152-182 19-49 (272)
285 PRK15079 oligopeptide ABC tran 93.8 0.061 1.3E-06 54.0 3.9 35 148-182 34-69 (331)
286 PRK05973 replicative DNA helic 93.8 0.43 9.3E-06 45.9 9.5 29 157-185 61-89 (237)
287 PRK13546 teichoic acids export 93.7 0.062 1.3E-06 52.2 3.7 32 152-183 42-73 (264)
288 PRK14270 phosphate ABC transpo 93.7 0.063 1.4E-06 51.2 3.7 31 153-183 23-53 (251)
289 TIGR02314 ABC_MetN D-methionin 93.7 0.061 1.3E-06 54.4 3.8 34 149-182 19-53 (343)
290 PRK08181 transposase; Validate 93.7 0.1 2.2E-06 51.1 5.2 27 158-184 104-130 (269)
291 COG0468 RecA RecA/RadA recombi 93.7 0.22 4.8E-06 49.0 7.5 46 140-185 38-85 (279)
292 cd03300 ABC_PotA_N PotA is an 93.7 0.063 1.4E-06 50.7 3.6 31 153-183 19-49 (232)
293 PRK09984 phosphonate/organopho 93.7 0.06 1.3E-06 51.7 3.5 32 152-183 22-53 (262)
294 PRK14251 phosphate ABC transpo 93.7 0.067 1.5E-06 51.0 3.8 31 153-183 23-53 (251)
295 PRK13637 cbiO cobalt transport 93.7 0.066 1.4E-06 52.5 3.8 33 150-182 22-55 (287)
296 PRK14265 phosphate ABC transpo 93.7 0.066 1.4E-06 52.1 3.8 31 152-182 38-68 (274)
297 cd03236 ABC_RNaseL_inhibitor_d 93.7 0.047 1E-06 52.7 2.8 28 156-183 22-49 (255)
298 PRK15112 antimicrobial peptide 93.7 0.064 1.4E-06 51.9 3.7 32 152-183 31-62 (267)
299 PRK14259 phosphate ABC transpo 93.7 0.064 1.4E-06 52.0 3.7 31 152-182 31-61 (269)
300 PRK14249 phosphate ABC transpo 93.7 0.066 1.4E-06 51.1 3.7 32 152-183 22-53 (251)
301 PRK14235 phosphate transporter 93.6 0.071 1.5E-06 51.6 4.0 32 152-183 37-68 (267)
302 TIGR02982 heterocyst_DevA ABC 93.6 0.071 1.5E-06 49.8 3.8 31 152-182 23-53 (220)
303 TIGR03522 GldA_ABC_ATP gliding 93.6 0.066 1.4E-06 52.8 3.8 31 152-182 20-50 (301)
304 PRK14254 phosphate ABC transpo 93.6 0.068 1.5E-06 52.4 3.9 32 152-183 57-88 (285)
305 cd00267 ABC_ATPase ABC (ATP-bi 93.6 0.076 1.7E-06 46.8 3.8 31 152-182 17-47 (157)
306 TIGR03771 anch_rpt_ABC anchore 93.6 0.052 1.1E-06 51.0 2.9 28 156-183 2-29 (223)
307 PRK13651 cobalt transporter AT 93.6 0.067 1.5E-06 53.1 3.8 33 150-182 22-55 (305)
308 PRK14260 phosphate ABC transpo 93.6 0.07 1.5E-06 51.3 3.8 32 152-183 25-56 (259)
309 cd03232 ABC_PDR_domain2 The pl 93.6 0.068 1.5E-06 49.0 3.6 30 153-182 26-55 (192)
310 cd01853 Toc34_like Toc34-like 93.6 0.29 6.2E-06 47.3 8.1 168 161-357 32-228 (249)
311 COG1120 FepC ABC-type cobalami 93.6 0.061 1.3E-06 52.3 3.3 34 149-182 16-50 (258)
312 PRK12377 putative replication 93.6 0.15 3.2E-06 49.4 6.0 24 161-184 102-125 (248)
313 cd03244 ABCC_MRP_domain2 Domai 93.6 0.072 1.6E-06 49.6 3.7 32 152-183 22-53 (221)
314 PRK13639 cbiO cobalt transport 93.6 0.071 1.5E-06 51.9 3.8 31 152-182 20-50 (275)
315 PRK11000 maltose/maltodextrin 93.6 0.067 1.5E-06 54.5 3.8 31 152-182 21-51 (369)
316 PRK14252 phosphate ABC transpo 93.6 0.073 1.6E-06 51.3 3.9 31 152-182 34-64 (265)
317 PRK10619 histidine/lysine/argi 93.6 0.073 1.6E-06 51.0 3.8 32 152-183 23-54 (257)
318 PRK11231 fecE iron-dicitrate t 93.6 0.07 1.5E-06 51.1 3.7 30 153-182 21-50 (255)
319 PRK13342 recombination factor 93.5 0.29 6.4E-06 50.5 8.5 25 161-185 37-61 (413)
320 PRK13647 cbiO cobalt transport 93.5 0.073 1.6E-06 51.8 3.8 32 152-183 23-54 (274)
321 PRK07261 topology modulation p 93.5 0.063 1.4E-06 48.6 3.1 25 161-185 1-25 (171)
322 COG4172 ABC-type uncharacteriz 93.5 0.071 1.5E-06 54.9 3.8 36 148-183 300-336 (534)
323 CHL00131 ycf16 sulfate ABC tra 93.5 0.062 1.4E-06 51.2 3.3 30 153-182 26-55 (252)
324 PF13481 AAA_25: AAA domain; P 93.5 0.59 1.3E-05 42.2 9.5 41 144-184 14-56 (193)
325 PRK09473 oppD oligopeptide tra 93.5 0.067 1.5E-06 53.7 3.6 36 148-183 29-65 (330)
326 PF01637 Arch_ATPase: Archaeal 93.5 0.078 1.7E-06 48.7 3.8 26 159-184 19-44 (234)
327 COG1136 SalX ABC-type antimicr 93.5 0.073 1.6E-06 50.8 3.6 34 148-181 18-52 (226)
328 PRK09580 sufC cysteine desulfu 93.5 0.064 1.4E-06 50.9 3.2 31 153-183 20-50 (248)
329 PRK14263 phosphate ABC transpo 93.4 0.079 1.7E-06 51.2 3.9 31 152-182 26-56 (261)
330 PRK14236 phosphate transporter 93.4 0.079 1.7E-06 51.4 3.9 32 152-183 43-74 (272)
331 PRK13640 cbiO cobalt transport 93.4 0.078 1.7E-06 51.8 3.8 31 153-183 26-56 (282)
332 TIGR02142 modC_ABC molybdenum 93.4 0.093 2E-06 53.1 4.5 32 152-183 15-46 (354)
333 PRK13650 cbiO cobalt transport 93.4 0.079 1.7E-06 51.7 3.9 32 152-183 25-56 (279)
334 PRK14264 phosphate ABC transpo 93.4 0.078 1.7E-06 52.5 3.9 33 150-182 60-93 (305)
335 PRK13644 cbiO cobalt transport 93.4 0.079 1.7E-06 51.5 3.9 32 152-183 20-51 (274)
336 cd03291 ABCC_CFTR1 The CFTR su 93.4 0.078 1.7E-06 52.1 3.8 32 152-183 55-86 (282)
337 cd03299 ABC_ModC_like Archeal 93.4 0.083 1.8E-06 50.0 3.9 31 153-183 18-48 (235)
338 PRK13634 cbiO cobalt transport 93.3 0.081 1.8E-06 51.9 3.8 31 153-183 26-56 (290)
339 PRK11022 dppD dipeptide transp 93.3 0.074 1.6E-06 53.2 3.6 36 148-183 20-56 (326)
340 TIGR03258 PhnT 2-aminoethylpho 93.3 0.079 1.7E-06 53.9 3.8 31 152-182 23-53 (362)
341 PRK13536 nodulation factor exp 93.3 0.08 1.7E-06 53.4 3.8 35 148-182 54-89 (340)
342 cd03289 ABCC_CFTR2 The CFTR su 93.3 0.081 1.8E-06 51.8 3.7 31 154-184 24-54 (275)
343 PRK14258 phosphate ABC transpo 93.3 0.083 1.8E-06 50.9 3.7 32 152-183 25-56 (261)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.3 0.091 2E-06 46.1 3.7 29 155-183 21-49 (144)
345 PRK11607 potG putrescine trans 93.2 0.083 1.8E-06 54.1 3.9 30 153-182 38-67 (377)
346 PRK14246 phosphate ABC transpo 93.2 0.081 1.8E-06 50.9 3.6 32 152-183 28-59 (257)
347 cd03237 ABC_RNaseL_inhibitor_d 93.2 0.066 1.4E-06 51.4 3.0 28 156-183 21-48 (246)
348 PRK14974 cell division protein 93.2 0.85 1.8E-05 46.1 11.0 27 158-184 138-164 (336)
349 PRK13635 cbiO cobalt transport 93.2 0.087 1.9E-06 51.4 3.8 31 153-183 26-56 (279)
350 cd03288 ABCC_SUR2 The SUR doma 93.2 0.094 2E-06 50.4 3.9 31 153-183 40-70 (257)
351 PRK11153 metN DL-methionine tr 93.2 0.087 1.9E-06 53.1 3.8 35 149-183 19-54 (343)
352 PF13191 AAA_16: AAA ATPase do 93.2 0.49 1.1E-05 42.0 8.4 30 156-185 20-49 (185)
353 TIGR03873 F420-0_ABC_ATP propo 93.1 0.086 1.9E-06 50.5 3.6 31 153-183 20-50 (256)
354 PRK13537 nodulation ABC transp 93.1 0.086 1.9E-06 52.3 3.6 35 149-183 21-56 (306)
355 PRK13652 cbiO cobalt transport 93.0 0.099 2.2E-06 50.9 3.9 32 152-183 22-53 (277)
356 TIGR01186 proV glycine betaine 93.0 0.083 1.8E-06 53.8 3.4 33 152-184 11-43 (363)
357 PRK13631 cbiO cobalt transport 93.0 0.099 2.1E-06 52.3 3.9 34 150-183 41-75 (320)
358 KOG1969 DNA replication checkp 93.0 0.49 1.1E-05 51.9 9.3 102 159-279 324-449 (877)
359 cd03297 ABC_ModC_molybdenum_tr 92.9 0.11 2.3E-06 48.4 3.8 30 152-182 16-45 (214)
360 TIGR02868 CydC thiol reductant 92.9 0.08 1.7E-06 56.1 3.3 32 152-183 353-384 (529)
361 PRK03695 vitamin B12-transport 92.9 0.09 2E-06 50.3 3.3 31 152-182 14-44 (248)
362 PRK13642 cbiO cobalt transport 92.9 0.1 2.3E-06 50.7 3.8 34 150-183 22-56 (277)
363 PLN03073 ABC transporter F fam 92.9 0.078 1.7E-06 58.7 3.2 31 152-182 195-225 (718)
364 PRK10636 putative ABC transpor 92.8 0.085 1.8E-06 57.6 3.5 32 152-183 19-50 (638)
365 PRK13633 cobalt transporter AT 92.8 0.1 2.3E-06 50.8 3.7 32 152-183 28-59 (280)
366 PRK14257 phosphate ABC transpo 92.8 0.1 2.2E-06 52.4 3.7 33 152-184 100-132 (329)
367 COG1126 GlnQ ABC-type polar am 92.8 0.091 2E-06 49.9 3.1 27 155-181 23-49 (240)
368 cd03115 SRP The signal recogni 92.7 2.1 4.5E-05 38.2 11.8 22 163-184 3-24 (173)
369 TIGR02928 orc1/cdc6 family rep 92.6 0.6 1.3E-05 46.7 9.0 102 158-282 38-142 (365)
370 TIGR03269 met_CoM_red_A2 methy 92.5 0.11 2.4E-06 55.1 3.7 34 150-183 15-49 (520)
371 COG1155 NtpA Archaeal/vacuolar 92.5 0.21 4.6E-06 52.7 5.6 137 242-382 291-435 (588)
372 PRK11147 ABC transporter ATPas 92.5 0.097 2.1E-06 57.1 3.3 32 152-183 21-52 (635)
373 PRK13636 cbiO cobalt transport 92.5 0.13 2.8E-06 50.3 3.8 32 152-183 24-55 (283)
374 PRK09536 btuD corrinoid ABC tr 92.5 0.12 2.6E-06 53.5 3.7 35 149-183 17-52 (402)
375 PRK10762 D-ribose transporter 92.4 0.11 2.4E-06 54.8 3.6 35 149-183 18-53 (501)
376 COG4987 CydC ABC-type transpor 92.3 0.11 2.4E-06 55.0 3.2 34 149-182 352-386 (573)
377 PRK15064 ABC transporter ATP-b 92.3 0.12 2.5E-06 55.1 3.5 33 150-182 16-49 (530)
378 COG4525 TauB ABC-type taurine 92.2 0.12 2.7E-06 48.4 3.1 31 152-182 23-53 (259)
379 PRK11176 lipid transporter ATP 92.2 0.12 2.6E-06 55.4 3.6 32 152-183 361-392 (582)
380 TIGR02881 spore_V_K stage V sp 92.2 0.32 7E-06 46.9 6.2 28 157-184 39-66 (261)
381 PRK11819 putative ABC transpor 92.1 0.12 2.7E-06 55.3 3.5 35 149-183 21-56 (556)
382 COG0488 Uup ATPase components 92.1 0.1 2.2E-06 55.7 2.9 32 152-183 21-52 (530)
383 COG3840 ThiQ ABC-type thiamine 92.1 0.13 2.9E-06 47.7 3.2 32 151-182 16-47 (231)
384 KOG0062 ATPase component of AB 92.1 0.097 2.1E-06 55.1 2.6 31 152-182 98-128 (582)
385 COG1122 CbiO ABC-type cobalt t 92.0 0.15 3.2E-06 48.9 3.6 33 149-181 18-51 (235)
386 COG2274 SunT ABC-type bacterio 92.0 0.12 2.6E-06 57.2 3.3 31 152-182 491-521 (709)
387 COG1066 Sms Predicted ATP-depe 92.0 0.48 1E-05 48.9 7.3 43 142-184 73-117 (456)
388 PF13238 AAA_18: AAA domain; P 92.0 0.13 2.8E-06 42.8 2.9 22 163-184 1-22 (129)
389 PRK10790 putative multidrug tr 92.0 0.12 2.7E-06 55.5 3.4 32 152-183 359-390 (592)
390 PRK10938 putative molybdenum t 92.0 0.13 2.8E-06 54.1 3.5 35 149-183 17-52 (490)
391 COG4586 ABC-type uncharacteriz 92.0 0.12 2.6E-06 50.6 2.9 33 149-181 39-71 (325)
392 COG4181 Predicted ABC-type tra 92.0 0.15 3.3E-06 47.0 3.3 27 155-181 31-57 (228)
393 TIGR02633 xylG D-xylose ABC tr 91.9 0.14 3E-06 54.0 3.6 33 150-182 16-49 (500)
394 PRK10070 glycine betaine trans 91.9 0.15 3.2E-06 52.8 3.7 32 152-183 46-77 (400)
395 COG1123 ATPase components of v 91.9 0.15 3.2E-06 54.3 3.8 35 148-182 304-339 (539)
396 PRK06526 transposase; Provisio 91.9 0.17 3.8E-06 48.9 4.0 26 159-184 97-122 (254)
397 PRK09700 D-allose transporter 91.8 0.14 3.1E-06 54.1 3.5 30 153-182 282-311 (510)
398 PRK10416 signal recognition pa 91.8 1.6 3.4E-05 43.8 10.7 27 158-184 112-138 (318)
399 PRK14722 flhF flagellar biosyn 91.8 1.8 3.9E-05 44.4 11.3 43 142-184 118-161 (374)
400 PRK13549 xylose transporter AT 91.8 0.14 3.1E-06 54.1 3.5 35 149-183 19-54 (506)
401 PRK10636 putative ABC transpor 91.8 0.14 3E-06 55.9 3.5 34 150-183 327-361 (638)
402 COG0488 Uup ATPase components 91.7 0.15 3.2E-06 54.6 3.6 34 152-185 340-373 (530)
403 PLN00020 ribulose bisphosphate 91.7 0.38 8.3E-06 49.3 6.3 23 163-185 151-173 (413)
404 PRK15134 microcin C ABC transp 91.7 0.15 3.3E-06 54.1 3.7 35 149-183 23-58 (529)
405 PF13521 AAA_28: AAA domain; P 91.7 0.11 2.3E-06 46.2 2.1 22 162-183 1-22 (163)
406 COG4555 NatA ABC-type Na+ tran 91.7 0.16 3.5E-06 47.9 3.3 37 146-182 13-50 (245)
407 PRK15064 ABC transporter ATP-b 91.7 0.15 3.2E-06 54.3 3.5 31 152-182 337-367 (530)
408 TIGR01193 bacteriocin_ABC ABC- 91.7 0.15 3.2E-06 56.3 3.5 32 152-183 492-523 (708)
409 PRK06921 hypothetical protein; 91.6 0.54 1.2E-05 45.8 7.0 26 159-184 116-141 (266)
410 PRK10261 glutathione transport 91.6 0.16 3.6E-06 55.2 3.8 36 148-183 29-65 (623)
411 TIGR02633 xylG D-xylose ABC tr 91.5 0.15 3.3E-06 53.7 3.4 34 149-182 274-308 (500)
412 PRK11147 ABC transporter ATPas 91.5 0.15 3.4E-06 55.5 3.5 31 153-183 338-368 (635)
413 PRK11174 cysteine/glutathione 91.5 0.16 3.4E-06 54.6 3.5 32 152-183 368-399 (588)
414 PRK09700 D-allose transporter 91.5 0.16 3.5E-06 53.7 3.5 31 152-182 23-53 (510)
415 TIGR03797 NHPM_micro_ABC2 NHPM 91.5 0.16 3.4E-06 55.8 3.5 32 152-183 471-502 (686)
416 KOG0057 Mitochondrial Fe/S clu 91.4 0.17 3.8E-06 53.6 3.6 35 150-184 367-402 (591)
417 COG0411 LivG ABC-type branched 91.4 0.092 2E-06 50.5 1.4 37 145-181 14-51 (250)
418 PRK10982 galactose/methyl gala 91.4 0.17 3.7E-06 53.3 3.5 31 152-182 16-46 (491)
419 cd03270 ABC_UvrA_I The excisio 91.4 0.14 3E-06 48.4 2.6 30 148-177 8-38 (226)
420 TIGR03719 ABC_ABC_ChvD ATP-bin 91.4 0.17 3.6E-06 54.2 3.5 32 152-183 23-54 (552)
421 PF08477 Miro: Miro-like prote 91.4 0.17 3.6E-06 41.9 2.8 23 162-184 1-23 (119)
422 PRK13949 shikimate kinase; Pro 91.3 0.43 9.4E-06 43.1 5.7 25 161-185 2-26 (169)
423 COG1131 CcmA ABC-type multidru 91.3 0.19 4.1E-06 49.6 3.6 38 147-184 17-55 (293)
424 PRK10522 multidrug transporter 91.3 0.16 3.4E-06 54.3 3.3 32 152-183 341-372 (547)
425 TIGR03415 ABC_choXWV_ATP choli 91.3 0.19 4.2E-06 51.5 3.8 32 152-183 42-73 (382)
426 TIGR00455 apsK adenylylsulfate 91.3 1.5 3.4E-05 39.5 9.4 26 158-183 16-41 (184)
427 TIGR02857 CydD thiol reductant 91.3 0.17 3.6E-06 53.7 3.4 32 152-183 340-371 (529)
428 TIGR00235 udk uridine kinase. 91.3 0.17 3.6E-06 47.0 3.0 26 159-184 5-30 (207)
429 PRK00300 gmk guanylate kinase; 91.3 0.18 3.9E-06 46.3 3.2 27 158-184 3-29 (205)
430 cd03287 ABC_MSH3_euk MutS3 hom 91.2 7 0.00015 37.1 14.0 35 148-182 19-53 (222)
431 PRK15439 autoinducer 2 ABC tra 91.2 0.2 4.3E-06 53.1 3.9 31 152-182 29-59 (510)
432 TIGR03375 type_I_sec_LssB type 91.2 0.18 3.8E-06 55.5 3.5 32 152-183 483-514 (694)
433 TIGR03796 NHPM_micro_ABC1 NHPM 91.2 0.17 3.6E-06 55.8 3.4 32 152-183 497-528 (710)
434 TIGR03269 met_CoM_red_A2 methy 91.2 0.2 4.4E-06 53.1 3.9 35 149-183 298-333 (520)
435 TIGR02322 phosphon_PhnN phosph 91.1 0.19 4.2E-06 45.1 3.2 25 160-184 1-25 (179)
436 cd00984 DnaB_C DnaB helicase C 91.1 0.69 1.5E-05 43.5 7.1 28 157-184 10-37 (242)
437 TIGR03263 guanyl_kin guanylate 91.1 0.17 3.6E-06 45.5 2.7 24 160-183 1-24 (180)
438 PRK08727 hypothetical protein; 91.0 3.1 6.6E-05 39.5 11.5 24 161-184 42-65 (233)
439 PF07088 GvpD: GvpD gas vesicl 91.0 2.1 4.6E-05 44.2 10.6 25 154-178 4-28 (484)
440 PRK11288 araG L-arabinose tran 90.9 0.18 3.9E-06 53.2 3.3 30 153-182 272-301 (501)
441 PF01583 APS_kinase: Adenylyls 90.9 2.9 6.3E-05 37.6 10.4 87 159-281 1-87 (156)
442 PRK10789 putative multidrug tr 90.9 0.19 4.1E-06 54.0 3.4 32 152-183 333-364 (569)
443 PRK10261 glutathione transport 90.8 0.22 4.8E-06 54.2 3.9 36 148-183 337-373 (623)
444 PRK10762 D-ribose transporter 90.8 0.2 4.3E-06 52.9 3.4 31 152-182 270-300 (501)
445 TIGR00064 ftsY signal recognit 90.8 2.3 4.9E-05 41.6 10.5 28 157-184 69-96 (272)
446 PRK13549 xylose transporter AT 90.8 0.21 4.5E-06 52.9 3.5 35 148-182 275-310 (506)
447 PRK11288 araG L-arabinose tran 90.8 0.22 4.8E-06 52.6 3.7 33 150-182 19-52 (501)
448 TIGR01842 type_I_sec_PrtD type 90.8 0.19 4.2E-06 53.5 3.3 32 152-183 336-367 (544)
449 TIGR02204 MsbA_rel ABC transpo 90.7 0.23 4.9E-06 53.2 3.8 32 152-183 358-389 (576)
450 PRK10938 putative molybdenum t 90.7 0.21 4.5E-06 52.5 3.4 31 152-182 278-308 (490)
451 PRK10078 ribose 1,5-bisphospho 90.7 0.2 4.3E-06 45.7 2.8 26 159-184 1-26 (186)
452 cd03243 ABC_MutS_homologs The 90.7 0.23 5E-06 45.9 3.4 26 156-181 25-50 (202)
453 KOG2543 Origin recognition com 90.7 2.4 5.2E-05 43.5 10.7 109 164-318 34-147 (438)
454 COG1474 CDC6 Cdc6-related prot 90.6 0.79 1.7E-05 46.8 7.4 98 153-281 32-135 (366)
455 PRK06217 hypothetical protein; 90.5 0.22 4.9E-06 45.2 3.1 25 161-185 2-26 (183)
456 PRK14531 adenylate kinase; Pro 90.5 0.23 4.9E-06 45.2 3.1 25 161-185 3-27 (183)
457 PRK05480 uridine/cytidine kina 90.5 0.23 5E-06 45.9 3.2 26 158-183 4-29 (209)
458 cd03280 ABC_MutS2 MutS2 homolo 90.5 0.3 6.4E-06 45.1 3.9 33 149-181 16-49 (200)
459 PRK14530 adenylate kinase; Pro 90.5 0.24 5.3E-06 46.2 3.3 27 159-185 2-28 (215)
460 TIGR02203 MsbA_lipidA lipid A 90.4 0.24 5.3E-06 52.8 3.7 32 152-183 350-381 (571)
461 PRK08233 hypothetical protein; 90.4 0.24 5.2E-06 44.2 3.1 25 160-184 3-27 (182)
462 PRK08116 hypothetical protein; 90.4 0.77 1.7E-05 44.7 6.9 22 163-184 117-138 (268)
463 PF00308 Bac_DnaA: Bacterial d 90.4 1.5 3.2E-05 41.3 8.6 25 161-185 35-59 (219)
464 COG1117 PstB ABC-type phosphat 90.4 0.24 5.2E-06 47.1 3.1 35 152-186 25-59 (253)
465 PRK11160 cysteine/glutathione 90.3 0.22 4.8E-06 53.6 3.3 32 152-183 358-389 (574)
466 TIGR00635 ruvB Holliday juncti 90.3 0.61 1.3E-05 45.6 6.1 25 161-185 31-55 (305)
467 COG1127 Ttg2A ABC-type transpo 90.2 0.26 5.7E-06 47.5 3.3 31 153-183 27-57 (263)
468 PF00448 SRP54: SRP54-type pro 90.2 3.8 8.2E-05 38.0 11.0 24 162-185 3-26 (196)
469 PRK15439 autoinducer 2 ABC tra 90.2 0.24 5.2E-06 52.5 3.4 30 153-182 282-311 (510)
470 PF01926 MMR_HSR1: 50S ribosom 90.2 0.24 5.3E-06 41.1 2.8 21 162-182 1-21 (116)
471 PRK11819 putative ABC transpor 90.1 0.26 5.6E-06 52.9 3.6 31 152-182 342-372 (556)
472 PRK15134 microcin C ABC transp 90.1 0.25 5.5E-06 52.5 3.5 34 149-182 300-334 (529)
473 COG1135 AbcC ABC-type metal io 90.1 0.32 7E-06 48.4 3.9 35 147-181 18-53 (339)
474 TIGR01194 cyc_pep_trnsptr cycl 90.1 0.24 5.2E-06 53.1 3.2 31 153-183 361-391 (555)
475 TIGR01192 chvA glucan exporter 90.0 0.25 5.3E-06 53.4 3.3 32 152-183 353-384 (585)
476 PLN03073 ABC transporter F fam 90.0 0.26 5.5E-06 54.7 3.5 32 152-183 527-558 (718)
477 TIGR00958 3a01208 Conjugate Tr 90.0 0.27 5.8E-06 54.4 3.6 32 152-183 499-530 (711)
478 PRK13545 tagH teichoic acids e 90.0 0.3 6.4E-06 52.3 3.8 32 152-183 42-73 (549)
479 cd03282 ABC_MSH4_euk MutS4 hom 89.9 5.9 0.00013 36.9 12.2 32 150-181 19-50 (204)
480 KOG4658 Apoptotic ATPase [Sign 89.9 1 2.2E-05 51.2 8.2 98 150-279 170-271 (889)
481 PRK00080 ruvB Holliday junctio 89.9 0.65 1.4E-05 46.3 6.0 25 161-185 52-76 (328)
482 PF02283 CobU: Cobinamide kina 89.9 0.18 3.9E-06 45.8 1.8 86 163-285 1-88 (167)
483 COG4136 ABC-type uncharacteriz 89.7 0.33 7.2E-06 43.9 3.3 30 153-182 21-50 (213)
484 COG4988 CydD ABC-type transpor 89.7 0.29 6.2E-06 52.3 3.4 125 152-288 339-493 (559)
485 TIGR03719 ABC_ABC_ChvD ATP-bin 89.6 0.27 5.9E-06 52.6 3.3 31 152-182 340-370 (552)
486 PRK08939 primosomal protein Dn 89.6 0.68 1.5E-05 46.1 5.9 27 159-185 155-181 (306)
487 cd01125 repA Hexameric Replica 89.6 4 8.6E-05 38.6 10.9 25 160-184 1-25 (239)
488 PRK06893 DNA replication initi 89.6 1.5 3.4E-05 41.4 8.1 24 162-185 41-64 (229)
489 PRK13657 cyclic beta-1,2-gluca 89.5 0.29 6.3E-06 52.7 3.4 32 152-183 353-384 (588)
490 COG1118 CysA ABC-type sulfate/ 89.4 0.32 7E-06 48.4 3.3 30 152-181 20-49 (345)
491 COG1121 ZnuC ABC-type Mn/Zn tr 89.4 0.34 7.4E-06 47.0 3.5 33 150-182 19-52 (254)
492 PRK09825 idnK D-gluconate kina 89.4 0.33 7.1E-06 44.2 3.2 26 159-184 2-27 (176)
493 PRK10982 galactose/methyl gala 89.3 0.31 6.8E-06 51.2 3.4 29 154-182 268-296 (491)
494 KOG0727 26S proteasome regulat 89.2 0.72 1.6E-05 44.9 5.4 69 161-249 190-264 (408)
495 COG1132 MdlB ABC-type multidru 89.2 0.32 6.9E-06 52.1 3.4 33 153-185 348-380 (567)
496 KOG0735 AAA+-type ATPase [Post 89.1 3.3 7.1E-05 45.7 10.7 34 152-185 423-456 (952)
497 PF03193 DUF258: Protein of un 89.1 0.17 3.8E-06 45.7 1.1 33 150-182 25-57 (161)
498 PTZ00088 adenylate kinase 1; P 89.1 0.46 1E-05 45.3 4.1 27 158-184 4-30 (229)
499 PRK13409 putative ATPase RIL; 89.0 0.32 6.8E-06 52.8 3.2 33 150-182 89-121 (590)
500 COG1119 ModF ABC-type molybden 89.0 0.33 7.1E-06 46.9 3.0 34 149-182 45-79 (257)
No 1
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-110 Score=828.54 Aligned_cols=362 Identities=28% Similarity=0.470 Sum_probs=343.2
Q ss_pred hhcccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCc-eeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEE
Q 015796 10 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGT-MRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQF 88 (400)
Q Consensus 10 ~~~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~-~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~ 88 (400)
....++++.+.+|+|++|+|.++++.|+. +++||+|.|+.+++. ..++||++|+++.++++||++..|+.+ |++|..
T Consensus 14 ~~~~~~~~~~~~G~v~~v~G~~lea~g~~-~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~-g~~V~~ 91 (441)
T COG1157 14 LALRNTDPYKRRGRLTRVTGLLLEAVGPQ-ARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSP-GAEVVP 91 (441)
T ss_pred hhhccCCcceEEEEEEEEeeeEEEEecCC-CcccceEEEEecCCCCceeEEEEEEcCCeEEEeccCccccCCC-CCEEEe
Confidence 35566788999999999999999999875 799999999986443 239999999999999999999999996 999999
Q ss_pred cCCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecC
Q 015796 89 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSA 168 (400)
Q Consensus 89 tg~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~ 168 (400)
++++++|++|++|||||+|++|+|||+.+.+....+.++...||||+.|.+++++|.||||+||+|+|||+|||+|||++
T Consensus 92 ~~~~~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAg 171 (441)
T COG1157 92 TGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAG 171 (441)
T ss_pred cCCccccccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEec
Confidence 99999999999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc-hHHHHHHHHHhhhcCCCccEEEEEeCCCCCHH
Q 015796 169 AGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTI 247 (400)
Q Consensus 169 ~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~ 247 (400)
+|+||||||+||+|++. || ++|+++|||| ||+.+|+++.|.++| ++|||+|++|+|+||.
T Consensus 172 sGVGKStLLgMiar~t~-------aD-----------v~ViaLIGERGREVrEFIE~~Lg~eg-l~rsViVvATSD~s~l 232 (441)
T COG1157 172 SGVGKSTLLGMIARNTE-------AD-----------VNVIALIGERGREVREFIEKDLGEEG-LKRSVVVVATSDESAL 232 (441)
T ss_pred CCCcHHHHHHHHhcccc-------CC-----------EEEEEEeeccchhHHHHHHHhcchhh-ccceEEEEECCCCCHH
Confidence 99999999999999986 78 9999999999 777888888999988 9999999999999999
Q ss_pred HHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCcee
Q 015796 248 ERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSIT 327 (400)
Q Consensus 248 ~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT 327 (400)
+|..++++|++|||||| ||||+|||+|||+||||+|+|||+++.||||+++||||++|+.|++|+||||+. .+||||
T Consensus 233 ~R~~aa~~At~IAEyFR-DqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~--~~GsIT 309 (441)
T COG1157 233 MRLKAAFTATTIAEYFR-DQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNG--DKGSIT 309 (441)
T ss_pred HHHHHHHHHHHHHHHHH-hCCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCCC--CCCcEE
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999984 589999
Q ss_pred EEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 328 ~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
+||||++++||++|||+|+++|||||||||||+||++|||||||+++|+||+|+.+ +.++|+++|+++
T Consensus 310 afYTVLveGDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i-----~~~~h~~~a~~~ 377 (441)
T COG1157 310 AFYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQI-----VSEEHRKAARRL 377 (441)
T ss_pred EEEEEEeecCCCCCchhhhhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHhhhc-----CCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999985 458999999763
No 2
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=4.1e-109 Score=839.98 Aligned_cols=378 Identities=85% Similarity=1.294 Sum_probs=353.6
Q ss_pred eeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCc
Q 015796 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSL 99 (400)
Q Consensus 20 ~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~ 99 (400)
+|++|++|.|+++++.|++.+++||+|+|..++|....|||++|+++.+.+++|++++|++++|++|.+++++++||+|+
T Consensus 1 ~y~~v~~i~G~~i~~~g~~~~~~Ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg~ 80 (466)
T TIGR01040 1 EYRTVSGVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSE 80 (466)
T ss_pred CCccceEEEccEEEEECCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCeEEEEEcCCCCCcccCCCEEEECCCccEEEcCc
Confidence 48899999999999999978999999999644555578999999999999999999999985599999999999999999
Q ss_pred CCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhHHH
Q 015796 100 DMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ 179 (400)
Q Consensus 100 ~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~ 179 (400)
+|||||+|++|+|||+.+++....++++++.||+|++|.+++++|+||||+||+|+|||+|||+||||++|+|||+|+.|
T Consensus 81 ~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~L~~~ 160 (466)
T TIGR01040 81 DMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 160 (466)
T ss_pred ccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHHHHHH
Confidence 99999999999999999887777788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHH
Q 015796 180 ICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259 (400)
Q Consensus 180 i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~ti 259 (400)
|++|+...+. ..+| +..+++++++|||++||||+|+.+|++++|+++|+|+||++|++|+|+||.+|+++||+|+|+
T Consensus 161 i~~~~~~~~~-~~aD--~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a~~~a~ti 237 (466)
T TIGR01040 161 ICRQAGLVKL-PTKD--VHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTT 237 (466)
T ss_pred HHHhhccccc-cccc--cccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHhhhHHH
Confidence 9999863210 0023 223445778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCCC
Q 015796 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDI 339 (400)
Q Consensus 260 AEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d~ 339 (400)
|||||+++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||++.+++||||+||+|++|+||+
T Consensus 238 AEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~~~~GSITai~tV~~~~dD~ 317 (466)
T TIGR01040 238 AEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDI 317 (466)
T ss_pred HHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCCCCCcceEEEEEEECCCCCC
Confidence 99999889999999999999999999999999999999999999999999999999999754589999999999999999
Q ss_pred CCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 340 THPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 340 ~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
+|||||+++|||||||||||+||++||||||||+.|+||+|+.+++|.+|+++|+++|++|
T Consensus 318 ~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~~v~~~~~~~~~h~~~a~~l 378 (466)
T TIGR01040 318 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQL 378 (466)
T ss_pred CCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccccccccCcCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999863
No 3
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.1e-108 Score=844.41 Aligned_cols=369 Identities=68% Similarity=1.092 Sum_probs=347.0
Q ss_pred eeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCc
Q 015796 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSL 99 (400)
Q Consensus 20 ~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~ 99 (400)
+|++|++|.|++++++|+..+++||+|+|+..++....|||++|+++.+.+++|+++.|+++++.+|.+|+++++||||+
T Consensus 1 ~y~~v~~i~g~iv~v~g~~~~~~ge~~~i~~~~~~~~~geVv~~~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~ 80 (458)
T TIGR01041 1 EYSTITEIAGPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSE 80 (458)
T ss_pred CccEEEEEEccEEEEEccCCCCcCCEEEEEcCCCcEEEEEEEEEECCEEEEEEecCCcCcCCCCcEEEECCCceEEEcCh
Confidence 58999999999999999988999999999644555578999999999999999999999986343599999999999999
Q ss_pred CCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhHHH
Q 015796 100 DMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ 179 (400)
Q Consensus 100 ~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~ 179 (400)
+|||||+|++|+|||+.+++....++++++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.|
T Consensus 81 ~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~~ 160 (458)
T TIGR01041 81 DMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ 160 (458)
T ss_pred hhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHHHHHH
Confidence 99999999999999998887777788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHH
Q 015796 180 ICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259 (400)
Q Consensus 180 i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~ti 259 (400)
|++|+. +|+ .+.+++|||++||||.+++.+|++++.+.++|+||++|++|+|+||.+|++++|+|+|+
T Consensus 161 ia~~~~-------ad~-----~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~ti 228 (458)
T TIGR01041 161 IARQAT-------VRG-----EESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTA 228 (458)
T ss_pred HHHhhc-------ccC-----CCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999976 331 12457999999999988888888889888999999999999999999999999999999
Q ss_pred HHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCCC
Q 015796 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDI 339 (400)
Q Consensus 260 AEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d~ 339 (400)
|||||+|+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||++++++||||+||+|++|+||+
T Consensus 229 AEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~~~~GSITai~tV~~~gdD~ 308 (458)
T TIGR01041 229 AEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKGKKGSITQMPILTMPGDDI 308 (458)
T ss_pred HHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCCCCCcceEEEEEEEcCCCCC
Confidence 99999789999999999999999999999999999999999999999999999999999865689999999999999999
Q ss_pred CCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 340 THPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 340 ~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
+|||+|+++|||||||||||+||++||||||||+.|+||+|+..+|+..+.++|+++|++|
T Consensus 309 ~dPI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~~~~~~~~~a~~l 369 (458)
T TIGR01041 309 THPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQL 369 (458)
T ss_pred CCchHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 4
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.2e-108 Score=846.06 Aligned_cols=370 Identities=70% Similarity=1.130 Sum_probs=349.4
Q ss_pred ceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCC
Q 015796 19 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVS 98 (400)
Q Consensus 19 ~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg 98 (400)
+.||+|++|.|++++++|++.+++||+|+|...++....|||++|+++.+.+++|+++.|+++.|++|.+||++++||+|
T Consensus 2 ~~yg~V~~i~g~~v~v~g~~~~~~ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg 81 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVEGVEGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVS 81 (460)
T ss_pred ceeEEEEEEECcEEEEeccCCCCCCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEccCCCCCCCCCCEEEeCCCccEEEcC
Confidence 57999999999999999998899999999964455557899999999999999999999998339999999999999999
Q ss_pred cCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhHH
Q 015796 99 LDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAA 178 (400)
Q Consensus 99 ~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~ 178 (400)
++|||||+|++|+|||+.+++....++++++.||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|+.
T Consensus 82 ~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~ 161 (460)
T PRK04196 82 EDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAA 161 (460)
T ss_pred cccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCccHHHH
Confidence 99999999999999999988877778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHH
Q 015796 179 QICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALT 258 (400)
Q Consensus 179 ~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~t 258 (400)
||++|+. +| +++.+++|||++||||.+++.+|++++.+.++|+||++|++|+|+||.+|++++|+|+|
T Consensus 162 ~ia~~~~-------~d-----~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~t 229 (460)
T PRK04196 162 QIARQAK-------VL-----GEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALT 229 (460)
T ss_pred HHHHhhh-------hc-----cCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 9999976 33 12245799999999998888888889989999999999999999999999999999999
Q ss_pred HHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCC
Q 015796 259 TAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDD 338 (400)
Q Consensus 259 iAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d 338 (400)
||||||+|||+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||++++++||||+||+|++|+||
T Consensus 230 iAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~~~~GSITai~~V~~~gdD 309 (460)
T PRK04196 230 AAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKGKKGSITQIPILTMPDDD 309 (460)
T ss_pred HHHHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCCCCCeeeEEEEEEEcCCCC
Confidence 99999977999999999999999999999999999999999999999999999999999986568999999999999999
Q ss_pred CCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 339 ITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 339 ~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
++|||+|+++|||||||||||+||++||||||||+.|+||+|+.++|+..++++|+++|+++
T Consensus 310 ~~dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~~~~~~~~~~~~~~~a~~l 371 (460)
T PRK04196 310 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHKDVANQL 371 (460)
T ss_pred CCCchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccccCCcccCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999863
No 5
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=3.1e-104 Score=812.87 Aligned_cols=355 Identities=26% Similarity=0.408 Sum_probs=337.0
Q ss_pred cceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeC
Q 015796 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (400)
Q Consensus 18 ~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpv 97 (400)
.+.+|+|++|.|+++++.|++.+++||+|+|. ++ ..|+|++++++.+.+++|+++.|++. |++|.+||++++|||
T Consensus 25 ~~~~G~V~~v~g~ii~v~gl~~~~~gEl~~i~--~~--~~g~Vi~l~~~~v~~~~l~~~~gi~~-G~~V~~tg~~~~vpv 99 (497)
T TIGR03324 25 VQEVGTVESVSTGIARVHGLPGVGFEELLRFP--GG--LLGIAFNVDEDEVGVVLLGEYSHLQA-GDEVERTGRVMDVPV 99 (497)
T ss_pred eeEEEEEEEEeceEEEEEccCCCCcCCEEEEC--CC--cEEEEEEEcCCeEEEEEecCCcCCcC-CCEEEECCCCCeEEC
Confidence 45779999999999999998899999999993 33 68999999999999999999999995 999999999999999
Q ss_pred CcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh-
Q 015796 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI- 176 (400)
Q Consensus 98 g~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L- 176 (400)
|++|||||+|++|+|||+.+++....++|++++||++++|.++++||+||||+||+|+|||||||+||||++|+|||+|
T Consensus 100 g~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~~g~GKT~La 179 (497)
T TIGR03324 100 GDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIA 179 (497)
T ss_pred CHhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecCCCCCHHHHH
Confidence 9999999999999999999888778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+.||++|.+ +| ++|||++||||.+++.+|++++.+.++|+||++|++|+|+||.+|+++||+|
T Consensus 180 l~~I~~q~~-------~d----------v~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a 242 (497)
T TIGR03324 180 IDTILNQKG-------RN----------VLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAA 242 (497)
T ss_pred HHHHHHhcC-------CC----------cEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHH
Confidence 689999864 33 4699999999988888888999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCC--CCCceeEEeeEee
Q 015796 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSITQIPILTM 334 (400)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~--~~GSiT~i~~v~~ 334 (400)
|||||||| |+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||++++ .+||||+||+|++
T Consensus 243 ~aiAEyfr-d~G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~~~~~GSITal~~V~~ 321 (497)
T TIGR03324 243 TSIGEHFM-EQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIET 321 (497)
T ss_pred HHHHHHHH-hCCCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccCCCCCcceeEEEEEEc
Confidence 99999999 99999999999999999999999999999999999999999999999999999754 4899999999999
Q ss_pred cCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 335 PNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 335 ~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
++||++|||||+++|||||||||||+||++||||||||+.|+||+|+++ +.++|+++|++|
T Consensus 322 ~~dD~s~pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~-----~~~~~~~~a~~l 382 (497)
T TIGR03324 322 EAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKA-----QLAAYRAVAGDL 382 (497)
T ss_pred CCCCCCCcchHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCccc-----cCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 458999999764
No 6
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=3.5e-103 Score=811.47 Aligned_cols=355 Identities=28% Similarity=0.416 Sum_probs=337.9
Q ss_pred cceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeC
Q 015796 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (400)
Q Consensus 18 ~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpv 97 (400)
.+.+|+|++|.|++++++|++.+++||+|+|. ++ ..|+|++++++.+.+++|+++.|++. |++|.+|+++++||+
T Consensus 25 ~~~~G~V~~v~g~~v~v~g~~~~~~ge~~~i~--~~--~~g~Vi~~~~~~~~~~~~~~~~gi~~-g~~V~~~~~~~~v~v 99 (502)
T PRK09281 25 VEEVGTVISVGDGIARVYGLDNVMAGELLEFP--GG--VYGIALNLEEDNVGAVILGDYEDIKE-GDTVKRTGRILEVPV 99 (502)
T ss_pred eEEEEEEEEEeCCEEEEECccccccCCEEEEC--CC--cEEEEEEEcCCeEEEEEecCcccccC-CCeeeecCCceEEec
Confidence 45679999999999999999889999999994 44 68999999999999999999999994 999999999999999
Q ss_pred CcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh-
Q 015796 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI- 176 (400)
Q Consensus 98 g~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L- 176 (400)
|++|||||+|++|+|||+.+++....++++++.||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 100 g~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~la 179 (502)
T PRK09281 100 GEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIA 179 (502)
T ss_pred CHHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecCCCCCchHHH
Confidence 9999999999999999999888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+.+|++|++ .+++|||++||||.+++.+|++++.+.++|+||++|++|+|+||.+|+++||+|
T Consensus 180 l~~i~~~~~-----------------~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a 242 (502)
T PRK09281 180 IDTIINQKG-----------------KDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAG 242 (502)
T ss_pred HHHHHHhcC-----------------CCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHH
Confidence 788888864 335789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCC--CCCceeEEeeEee
Q 015796 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSITQIPILTM 334 (400)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~--~~GSiT~i~~v~~ 334 (400)
||+||||| ++|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++. .+||||+||+|++
T Consensus 243 ~tiAEyfr-d~G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~~~GSITal~~V~~ 321 (502)
T PRK09281 243 CAMGEYFM-DNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIET 321 (502)
T ss_pred HHHHHHHH-HcCCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCCCCCccEEEEEEEEC
Confidence 99999999 88999999999999999999999999999999999999999999999999999853 4899999999999
Q ss_pred cCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 335 PNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 335 ~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|+||++|||||+++|||||||||||+||++||||||||+.|+||+|+.++ .++|+++|++|
T Consensus 322 ~~dD~s~pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~-----~~~~~~~a~~l 382 (502)
T PRK09281 322 QAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQ-----IKAMKKVAGTL 382 (502)
T ss_pred CCCCCCCcchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCCccC-----CHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876 58999999874
No 7
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=1.6e-102 Score=797.08 Aligned_cols=355 Identities=28% Similarity=0.393 Sum_probs=336.3
Q ss_pred cceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeC
Q 015796 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (400)
Q Consensus 18 ~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpv 97 (400)
....|+|++|.|.++++.|+..+++||+|+|. ++ ..|+|++++++.+.+++|+++.|++. |++|++|++.++||+
T Consensus 4 ~~~~G~V~~v~~~ii~v~Gl~~~~~ge~~~i~--~~--~~g~vi~~~~~~v~~~~l~~~~gi~~-G~~V~~tg~~~~vpv 78 (485)
T CHL00059 4 IVNTGTVLQVGDGIARIYGLDEVMAGELVEFE--DG--TIGIALNLESNNVGVVLMGDGLMIQE-GSSVKATGKIAQIPV 78 (485)
T ss_pred eeeeEEEEEEeccEEEEeccccCCcCCEEEEC--CC--CEEEEEEEcCCEEEEEEeeCCCCCCC-CCEEEECCCcceEEc
Confidence 35679999999999999999889999999994 44 58999999999999999999999995 999999999999999
Q ss_pred CcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh-
Q 015796 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI- 176 (400)
Q Consensus 98 g~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L- 176 (400)
|++|||||+|++|+|||+.+++....+++++.+||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 79 g~~llGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~La 158 (485)
T CHL00059 79 SEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 158 (485)
T ss_pred CHhhcCCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHH
Confidence 9999999999999999999888777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+.+|++|.+ .+++|||++||||.+++.+|++++.+.++|+||++|++|+++||.+|+++||+|
T Consensus 159 l~~I~~q~~-----------------~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a 221 (485)
T CHL00059 159 TDTILNQKG-----------------QNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTG 221 (485)
T ss_pred HHHHHhccc-----------------CCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHH
Confidence 788888753 346889999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCC--CCCceeEEeeEee
Q 015796 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSITQIPILTM 334 (400)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~--~~GSiT~i~~v~~ 334 (400)
|||||||| ++|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++. .+||||+||+|++
T Consensus 222 ~aiAEyfr-~~G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~~~~GSITal~~V~~ 300 (485)
T CHL00059 222 AALAEYFM-YRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVET 300 (485)
T ss_pred hhHHHHHH-HcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCCCCCcceEEEEEEEc
Confidence 99999999 89999999999999999999999999999999999999999999999999999853 3899999999999
Q ss_pred cCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 335 PNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 335 ~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
++||++||||++++|||||||||||+||++||||||||+.|+||+|+.++. ++|+++|.+|
T Consensus 301 ~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg~~aq~-----~~~~~~a~~l 361 (485)
T CHL00059 301 QAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQI-----KAMKQVAGKL 361 (485)
T ss_pred cCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCcccchhcCCchhhc-----HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998764 7899988754
No 8
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=3.1e-102 Score=794.18 Aligned_cols=359 Identities=28% Similarity=0.432 Sum_probs=333.8
Q ss_pred eeeEEEEEECCEEEEecCC--CCCCCcEEEEEeCCCceeeEEEEE-EeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 015796 20 EYRTVTGVAGPLVILDKVK--GPKYYEIVNIRLGDGTMRRGQVLE-VDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (400)
Q Consensus 20 ~~G~V~~I~G~lv~v~gl~--~~~iGEl~~v~~~~g~~~~geVi~-~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vp 96 (400)
.+|+|++|.|++|++++.. .+++||+|+|...++....+||++ |+++.+.+++|++++|+++ |+.|.+++++++||
T Consensus 2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~-G~~V~~tg~~~~v~ 80 (463)
T PRK09280 2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVR-GMEVIDTGAPISVP 80 (463)
T ss_pred CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCC-CCEEEeCCCceEEE
Confidence 3699999999999999873 459999999952323458899999 9999999999999999995 99999999999999
Q ss_pred CCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh
Q 015796 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (400)
Q Consensus 97 vg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L 176 (400)
+|++|||||+|++|+|||+.+++....+||++++||+|++|.++++||.||||+||+|+|||||||++|||++|+|||+|
T Consensus 81 vg~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~L 160 (463)
T PRK09280 81 VGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL 160 (463)
T ss_pred cChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHH
Confidence 99999999999999999999887777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+.||+++.. +| ...+|||++||||.+|+.+|++++.+.+.|+||++|++|+|+||.+|++++|+|
T Consensus 161 l~~i~~~~~-------~~--------~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a 225 (463)
T PRK09280 161 IQELINNIA-------KE--------HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTG 225 (463)
T ss_pred HHHHHHHHH-------hc--------CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 999998875 33 224899999999988888888888888899999999999999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecC
Q 015796 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN 336 (400)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~ 336 (400)
+|+|||||++||+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++|+
T Consensus 226 ~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~--~~GSITai~tVl~~g 303 (463)
T PRK09280 226 LTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST--KKGSITSVQAVYVPA 303 (463)
T ss_pred HHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCC--CCCceeEEEEEECcC
Confidence 999999993399999999999999999999999999999999999999999999999999983 589999999999999
Q ss_pred CCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 337 DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 337 ~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
||++|||+|++++||||||+|||+||++||||||||+.|+||+|++ .+++++|+++|+++
T Consensus 304 dD~~dPI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~----~~~~~~~~~~a~~~ 363 (463)
T PRK09280 304 DDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDP----LIVGEEHYDVAREV 363 (463)
T ss_pred CCCCCcchHhhhhhcceEEEEcHHHHhCCCCCccCCcccccccccc----ccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999953 25678999999864
No 9
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=2.9e-102 Score=801.07 Aligned_cols=355 Identities=27% Similarity=0.413 Sum_probs=337.2
Q ss_pred cceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeC
Q 015796 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (400)
Q Consensus 18 ~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpv 97 (400)
.+.+|+|++|.|+++++.|++.+++||+|+|. ++ ..|+|++++++.+.+++|+++.|++. |++|.+||++++||+
T Consensus 25 ~~~~G~V~~v~g~i~~v~gl~~~~~ge~~~i~--~~--~~g~V~~l~~~~v~~~~l~~~~gi~~-G~~V~~tg~~~~vpv 99 (502)
T PRK13343 25 AREIGRVESVGDGIAFVSGLPDAALDELLRFE--GG--SRGFAFNLEEELVGAVLLDDTADILA-GTEVRRTGRVLEVPV 99 (502)
T ss_pred eEEeeEEEEEeCCEEEEeCCCCCCCCCEEEEC--CC--cEEEEEEecCCeEEEEEeeCCCCCCC-CCEeEecCCcceeec
Confidence 45779999999999999998899999999993 44 68999999999999999999999985 999999999999999
Q ss_pred CcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh-
Q 015796 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI- 176 (400)
Q Consensus 98 g~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L- 176 (400)
|++|||||+|++|+|||+.+++....+++++..+|+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 100 g~~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g~~g~GKt~La 179 (502)
T PRK13343 100 GDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIA 179 (502)
T ss_pred CHHhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeCCCCCCccHHH
Confidence 9999999999999999999988888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+.+|++|.+ .+++|||++||||.+++.+|++++.+.++|+||++|++|+|+||.+|+++||+|
T Consensus 180 l~~i~~~~~-----------------~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a 242 (502)
T PRK13343 180 IDAIINQKD-----------------SDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAG 242 (502)
T ss_pred HHHHHhhcC-----------------CCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHH
Confidence 789988754 335789999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCC--CCCceeEEeeEee
Q 015796 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSITQIPILTM 334 (400)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~--~~GSiT~i~~v~~ 334 (400)
||+||||| |+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++. .+||||+||+|++
T Consensus 243 ~aiAEyfr-d~G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~~~~gGSITal~~V~~ 321 (502)
T PRK13343 243 CAIAEYFR-DQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIET 321 (502)
T ss_pred HHHHHHHH-hCCCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCCCCCCcceEEEEEEEc
Confidence 99999999 89999999999999999999999999999999999999999999999999999852 4899999999999
Q ss_pred cCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 335 PNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 335 ~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
++||++||||++++|||||||||||+||++||||||||+.|+||+|++++ .++|+++|.+|
T Consensus 322 ~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~-----~~~~~~~a~~l 382 (502)
T PRK13343 322 LAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQ-----HPAIRKESGRL 382 (502)
T ss_pred CCCCCCCcchhhhhcccceEEEECHHHHhCCCCCccCCccchhccCcccc-----CHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999864 58999998764
No 10
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=3.6e-102 Score=803.75 Aligned_cols=355 Identities=30% Similarity=0.434 Sum_probs=336.2
Q ss_pred cceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeC
Q 015796 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (400)
Q Consensus 18 ~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpv 97 (400)
.+.+|+|++|.|++++++|+..+++||+|+|. ++ ..|+|++++++.+.+++|+++.|++. |++|.+||++++||+
T Consensus 24 ~~~~G~V~~v~g~ii~v~g~~~~~~ge~~~i~--~~--~~g~Vi~~~~~~~~~~~~~~~~gi~~-G~~V~~tg~~~~v~v 98 (501)
T TIGR00962 24 MEEVGTVVSVGDGIARVYGLENVMSGELIEFE--GG--VQGIALNLEEDSVGAVIMGDYSNIRE-GSTVKRTGRILKVPV 98 (501)
T ss_pred eEEEEEEEEEeCCEEEEECCcCCCCCCEEEEC--CC--eEEEEEEecCCeEEEEEecCCcCCCC-CCeeEecCCccEEec
Confidence 45779999999999999999889999999993 44 68999999999999999999999985 999999999999999
Q ss_pred CcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh-
Q 015796 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI- 176 (400)
Q Consensus 98 g~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L- 176 (400)
|++|||||+|++|+|||+.+++....+++++..||++++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 99 g~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g~GKt~La 178 (501)
T TIGR00962 99 GDGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVA 178 (501)
T ss_pred ChHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecCCCCCccHHH
Confidence 9999999999999999999887777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+.+|++|++ + +++|||++||||.+++.+|++++.+.++|+||++|++|+|+||.+|+++||+|
T Consensus 179 l~~i~~~~~-------~----------dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a 241 (501)
T TIGR00962 179 IDTIINQKD-------S----------DVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTG 241 (501)
T ss_pred HHHHHhhcC-------C----------CeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHH
Confidence 789988864 2 35689999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCC--CCceeEEeeEee
Q 015796 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR--KGSITQIPILTM 334 (400)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~--~GSiT~i~~v~~ 334 (400)
||+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++.+ +||||+||+|++
T Consensus 242 ~aiAEyfr-d~G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~~g~GSITal~~V~~ 320 (501)
T TIGR00962 242 CTMAEYFR-DNGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIET 320 (501)
T ss_pred HHHHHHHH-HcCCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCCCCCcceEEEEEEEC
Confidence 99999999 899999999999999999999999999999999999999999999999999998532 799999999999
Q ss_pred cCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 335 PNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 335 ~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|+||++||||++++|||||||||||+||++||||||||+.|+||+|+.++. ++|+++|++|
T Consensus 321 ~~dD~s~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~-----~~~~~~a~~l 381 (501)
T TIGR00962 321 QAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQI-----KAMKQVAGSL 381 (501)
T ss_pred CCCCCCCcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCccccC-----HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998754 7999999864
No 11
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.3e-101 Score=784.12 Aligned_cols=366 Identities=25% Similarity=0.396 Sum_probs=337.8
Q ss_pred CchhhhcccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCE
Q 015796 6 NNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTT 85 (400)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~ 85 (400)
|.+|..+. ..+.+.+|+|++|.|+++++.|+. +++||+|+|+..++ ...|||++|+++.+++|+|++++|++. |++
T Consensus 12 ~~~~~~~~-~~~~~~~G~v~~v~g~~i~~~g~~-~~ige~~~i~~~~~-~~~~EVv~~~~~~~~l~~~~~~~gi~~-g~~ 87 (444)
T PRK08972 12 KQYKVKVP-PFRAVASGKLVRVVGLTLEATGCR-APVGSLCSIETMAG-ELEAEVVGFDGDLLYLMPIEELRGVLP-GAR 87 (444)
T ss_pred HHHhhccC-CCCcceeeEEEEEEcCEEEEeeCC-CCCCCEEEEecCCC-cEEEEEEEecCCEEEEEECCCcCCCCC-CCE
Confidence 45666666 556688899999999999999986 89999999954233 479999999999999999999999996 999
Q ss_pred EEEcCCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeee
Q 015796 86 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPL 165 (400)
Q Consensus 86 V~~tg~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I 165 (400)
|.+||++++||+|++|||||+|++|+|||+.+++....+++++++||+|++|.++++||+||+++||.++|+++|||++|
T Consensus 88 V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI 167 (444)
T PRK08972 88 VTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGL 167 (444)
T ss_pred EEECCCccEEEcChhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEE
Confidence 99999999999999999999999999999998887777889999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCC
Q 015796 166 FSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDP 245 (400)
Q Consensus 166 ~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~ 245 (400)
||++|+|||||+++|+++.. +| ++||++||||.+|+.+|++++.+++.|+||++|++|+|+|
T Consensus 168 ~G~sG~GKSTLL~~I~~~~~-------~d-----------v~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p 229 (444)
T PRK08972 168 FAGSGVGKSVLLGMMTRGTT-------AD-----------VIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTS 229 (444)
T ss_pred ECCCCCChhHHHHHhccCCC-------CC-----------EEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCC
Confidence 99999999999999986543 33 7888999999777766666655556699999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCc
Q 015796 246 TIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGS 325 (400)
Q Consensus 246 ~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GS 325 (400)
|.+|++++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+...++||
T Consensus 230 ~~~R~~a~~~A~tiAEyfr-d~G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~~~GS 308 (444)
T PRK08972 230 PLMRLKGCETATTIAEYFR-DQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCCCCCce
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999986445899
Q ss_pred eeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 326 ITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 326 iT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
||+||+|++|+||++|||+|+++|||||||||||+||++||||||||+.|+||+|+.+ ++++|+++|++
T Consensus 309 ITai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~i-----~~~~h~~~a~~ 377 (444)
T PRK08972 309 ITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMV-----ISEEHLEAMRR 377 (444)
T ss_pred eeeEEEEEEeCCCCCcchHHhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCchhc-----CcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999875 46899999964
No 12
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=1.5e-101 Score=786.81 Aligned_cols=357 Identities=27% Similarity=0.411 Sum_probs=332.7
Q ss_pred eeEEEEEECCEEEEecCCCCCCCcEE---EEEeCCCceeeEEEEE-EeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 015796 21 YRTVTGVAGPLVILDKVKGPKYYEIV---NIRLGDGTMRRGQVLE-VDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (400)
Q Consensus 21 ~G~V~~I~G~lv~v~gl~~~~iGEl~---~v~~~~g~~~~geVi~-~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vp 96 (400)
+|+|++|.|.++++.|+. +++||+| .+...++....+||++ |+++.+.+++|+++.|++. |+.|.+++++++||
T Consensus 2 ~G~v~~v~g~~ie~~~~~-~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~-G~~V~~t~~~~~i~ 79 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEFEQ-GELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVR-GLEVIDTGAPISVP 79 (461)
T ss_pred ccEEEEEEeeEEEEEECC-CCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCC-CCEEEeCCCceEEE
Confidence 599999999999999875 6999999 8853344247899999 9999999999999999995 99999999999999
Q ss_pred CCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh
Q 015796 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (400)
Q Consensus 97 vg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L 176 (400)
+|++|||||+|++|+|||+.+++....+||+++.||+|++|.+++++|.||||+||+|+|||||||++|||++|+|||+|
T Consensus 80 vg~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L 159 (461)
T TIGR01039 80 VGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL 159 (461)
T ss_pred cChhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHH
Confidence 99999999999999999998877766788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+.|++++.. +| .+.++||++||||.+|+.+|++++.+.++|+||++|+||+|+||.+|++++|+|
T Consensus 160 ~~~~~~~~~-------~~--------~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a 224 (461)
T TIGR01039 160 IQELINNIA-------KE--------HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTG 224 (461)
T ss_pred HHHHHHHHH-------hc--------CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 999998865 33 234899999999988888888888888999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecC
Q 015796 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN 336 (400)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~ 336 (400)
+|+|||||+++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++|+
T Consensus 225 ~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~--~~GSITai~tVl~~g 302 (461)
T TIGR01039 225 LTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITST--KTGSITSVQAVYVPA 302 (461)
T ss_pred HHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCC--CCCceeEEEEEEccC
Confidence 999999994489999999999999999999999999999999999999999999999999984 589999999999999
Q ss_pred CCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 337 DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 337 ~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
||++|||+|++++||||||+|||+||++||||||||+.|+||+|+. .++.++|+++|+++
T Consensus 303 dD~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~----~~~~~~h~~~a~~~ 362 (461)
T TIGR01039 303 DDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDP----SVVGEEHYDVARGV 362 (461)
T ss_pred CCCCCccHHHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCC----ccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999954 25668999999864
No 13
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=3.8e-101 Score=782.63 Aligned_cols=358 Identities=29% Similarity=0.484 Sum_probs=332.8
Q ss_pred cccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCc-eeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCe
Q 015796 14 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGT-MRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEV 92 (400)
Q Consensus 14 ~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~-~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~ 92 (400)
..++.+.+|+|++|.|+++++.+ ..+++||+|+|+.+++. .+.+||++|+++.+++|+|++++|++. |++|.+||++
T Consensus 17 ~~~~~~~~G~V~~v~g~~v~~~~-~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~V~~tg~~ 94 (439)
T PRK06936 17 GSRLIQIRGRVTQVTGTILKAVV-PGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGISS-NTEVSPTGTM 94 (439)
T ss_pred cCCccceeeEEEEEECcEEEEEe-CCCCCCCEEEEecCCCCcceEEEEEEEECCeEEEEecCCCCCCCC-CCEEEeCCCc
Confidence 45778889999999999999975 56999999999754333 488999999999999999999999995 9999999999
Q ss_pred eeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCC
Q 015796 93 LKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (400)
Q Consensus 93 ~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~G 172 (400)
++||+|++|||||+|++|||||+.+++....++|+++.||+|++|.++++||+||+++||.++|+++|||++|||++|+|
T Consensus 95 ~~v~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~G 174 (439)
T PRK06936 95 HQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGG 174 (439)
T ss_pred eEEEeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCC
Confidence 99999999999999999999999988777778899999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHH-HHHHhhhcCCCccEEEEEeCCCCCHHHHHh
Q 015796 173 HNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQF-FKRDFEENGSMERVTLFLNLANDPTIERII 251 (400)
Q Consensus 173 Kt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~-~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~ 251 (400)
||||+++|+++.. +| +|||++||||.+|+.+ +++.+++++ |+||++|++|+|+||.+|++
T Consensus 175 KStLl~~Ia~~~~-------~d-----------v~V~~liGERgrEv~ef~~~~l~~~~-l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 175 KSTLLASLIRSAE-------VD-----------VTVLALIGERGREVREFIESDLGEEG-LRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred hHHHHHHHhcCCC-------CC-----------EEEEEEEccCcHHHHHHHHHHhcccc-cceeEEEEECCCCCHHHHHH
Confidence 9999999998864 34 8999999999655554 545576666 99999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEee
Q 015796 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (400)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~ 331 (400)
++|+|+|+||||| ||||||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+
T Consensus 236 a~~~a~tiAEyfr-d~G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~--~~GSIT~i~t 312 (439)
T PRK06936 236 AGFVATSIAEYFR-DQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQS--DKGSITALYT 312 (439)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC--CCcceeeeEE
Confidence 9999999999999 899999999999999999999999999999999999999999999999999973 5899999999
Q ss_pred EeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 332 v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|++|+||++|||+|+++||+||||+|||+||++||||||||+.|+||+|+.++ .++|+++|+++
T Consensus 313 Vl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~-----~~~~~~~a~~~ 376 (439)
T PRK06936 313 VLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIV-----SKEHKTWAGRL 376 (439)
T ss_pred EEccCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCCcccccccchhhC-----CHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998754 57999999864
No 14
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=3.4e-101 Score=780.59 Aligned_cols=350 Identities=45% Similarity=0.773 Sum_probs=332.4
Q ss_pred cceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeC
Q 015796 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (400)
Q Consensus 18 ~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpv 97 (400)
.+.||+|++|.|+++++++ +.+++||+|+|...++ ...|||++++++.+.+++|++++|++ .|++|.+||++++|||
T Consensus 2 ~~~~g~v~~i~G~~v~v~~-~~~~~ge~~~i~~~~~-~~~geVi~~~~~~v~~~~~~~t~Gl~-~g~~V~~tg~~~~vpv 78 (436)
T PRK02118 2 QKIYTKITDITGNVITVEA-EGVGYGELATVERKDG-SSLAQVIRLDGDKVTLQVFGGTRGIS-TGDEVVFLGRPMQVTY 78 (436)
T ss_pred cceeEEEEEEECcEEEEEe-CCCCCCCEEEEEcCCC-CEEEEEEEEcCCEEEEEEecCCcCCC-CCCEEEeCCCceEEEc
Confidence 4679999999999999998 5689999999975445 47899999999999999999999999 5999999999999999
Q ss_pred CcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhH
Q 015796 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 177 (400)
Q Consensus 98 g~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~ 177 (400)
|++|||||+|++|+|||+++++.. ..+++++.||||++|.+++++|+||||+||+|+||+||||+||||++|+|||+|+
T Consensus 79 g~~lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~ 157 (436)
T PRK02118 79 SESLLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALL 157 (436)
T ss_pred CccccCCEEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHH
Confidence 999999999999999999877744 4589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHH
Q 015796 178 AQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIAL 257 (400)
Q Consensus 178 ~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~ 257 (400)
.+|++|+. +| ++||++||||.+|+.+|++++.+.++|+||++|+++||+||++|+++|++|+
T Consensus 158 ~~ia~~~~-------~~-----------v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~Al 219 (436)
T PRK02118 158 ARIALQAE-------AD-----------IIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMAL 219 (436)
T ss_pred HHHHHhhC-------CC-----------eEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHH
Confidence 99999975 45 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCC-CeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecC
Q 015796 258 TTAEYLAYECG-KHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN 336 (400)
Q Consensus 258 tiAEyfr~d~G-~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~ 336 (400)
|+||||| ++| +||||++||+||||+|+||||+++||||+++||||+||++|++|+||||+..+ +||||+||+|++|+
T Consensus 220 tiAEyfr-d~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~~-~GSITai~~V~~p~ 297 (436)
T PRK02118 220 AVAEKFA-LEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFED-GGSITIIAVTTMPG 297 (436)
T ss_pred HHHHHHH-hcCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCC-CeeEEEEEEEEcCC
Confidence 9999999 666 99999999999999999999999999999999999999999999999998644 89999999999999
Q ss_pred CCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 337 DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 337 ~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
||++|||||+++|||||||||||+| |||+.|+||+|+.++|+ +|+++|.++|+++
T Consensus 298 DD~tdPi~d~~~silDGqIvLsR~l--------ID~l~S~SRl~~~v~g~-~t~~~h~~~a~~l 352 (436)
T PRK02118 298 DDVTHPVPDNTGYITEGQFYLRRGR--------IDPFGSLSRLKQLVIGK-KTREDHGDLMNAM 352 (436)
T ss_pred CCcCccHHHHHHHhcCcEEEecccc--------ccCccccccccccccCc-cccHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999 9999999999975
No 15
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=7.2e-101 Score=782.65 Aligned_cols=367 Identities=23% Similarity=0.367 Sum_probs=335.5
Q ss_pred cceeeEEEEEECCEEEE---ecCCCCCCCcEEEEEeCCCceeeEEEEEEeCC-eEEEEEccCCCCCccCCCEEEEcCCee
Q 015796 18 AMEYRTVTGVAGPLVIL---DKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGE-KAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (400)
Q Consensus 18 ~~~~G~V~~I~G~lv~v---~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~-~~~l~~~~~~~Gl~~~g~~V~~tg~~~ 93 (400)
..+.|+|.+|.|+++++ .|++++.+||+++++.++++...|.|++++++ .+.+++|++++|++ .|++|.+||+++
T Consensus 37 ~~~~G~V~~v~~gia~v~~v~Gl~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~-~G~~V~~tg~~~ 115 (574)
T PTZ00185 37 TEMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQ-SGQKVMATGKLL 115 (574)
T ss_pred heeeEEEEEEcCeEEEEeecCCCcccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCC-CCCEEEECCCcc
Confidence 34679999998879995 89999999999999755555568999999999 69999999999999 599999999999
Q ss_pred eEeCCcCCcceEEcCCCCccCCC------CCCCCC-ceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeee
Q 015796 94 KTPVSLDMLGRIFNGSGKPIDNG------PPILPE-AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLF 166 (400)
Q Consensus 94 ~Vpvg~~lLGrV~D~lG~Pld~~------~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~ 166 (400)
+||||++|||||+|++|+|||++ +++... .+++++..||+|++|.++++||+||||+||+|+|||||||++||
T Consensus 116 ~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~lIf 195 (574)
T PTZ00185 116 YIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIV 195 (574)
T ss_pred EEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEEee
Confidence 99999999999999999999987 334444 46799999999999999999999999999999999999999999
Q ss_pred cCCCCChhhh-HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCC
Q 015796 167 SAAGLPHNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDP 245 (400)
Q Consensus 167 g~~G~GKt~L-~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~ 245 (400)
|++|+|||+| +.+|++|...... . .++++++|||++||||.+++.+++++|++.|+|+||++|++++|+|
T Consensus 196 Gd~GtGKTtLAld~IinQ~~~~~~-------~--~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 196 GDRQTGKTSIAVSTIINQVRINQQ-------I--LSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCCChHHHHHHHHHhhhhhccc-------c--ccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 9999999999 6999998731000 0 0124469999999999988888999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCC-C-C
Q 015796 246 TIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG-R-K 323 (400)
Q Consensus 246 ~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~-~-~ 323 (400)
|.+|+++||+|||+||||| |+|+|||+++|||||||+|+||||+++||||+++||||++|+.|++|+||||+++. . +
T Consensus 267 ~~~r~~Apy~a~tiAEYFr-d~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlERAg~l~~~~G~ 345 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFM-NRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGG 345 (574)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccccCCCCC
Confidence 9999999999999999999 89999999999999999999999999999999999999999999999999999864 2 7
Q ss_pred CceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 324 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 324 GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
||||+||+|++++||++||||++++|||||||||||+||++|+||||||+.|+||+|+.++. +.|+++|.++
T Consensus 346 GSITAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~aq~-----~~~k~vAg~l 417 (574)
T PTZ00185 346 GSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQN-----VAMKAVAGKL 417 (574)
T ss_pred cceEEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCccCC-----HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999775 4699888753
No 16
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=3.6e-101 Score=788.60 Aligned_cols=357 Identities=25% Similarity=0.407 Sum_probs=332.8
Q ss_pred eeeEEEEEECCEEEEecCCC--CCCCcEEEEEeCCCceeeEEEEEE-eCCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 015796 20 EYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEV-DGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (400)
Q Consensus 20 ~~G~V~~I~G~lv~v~gl~~--~~iGEl~~v~~~~g~~~~geVi~~-~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vp 96 (400)
.+|+|++|.|++++++|+.+ +++||+|+|...++ ...+||+++ +++.+.+++|+++.|+++ |++|..|+++++||
T Consensus 2 ~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~-~~~~eVv~~l~~~~v~l~~~~~~~gl~~-G~~V~~tg~~~~v~ 79 (461)
T PRK12597 2 MIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGG-PTLLEVKQHLDETTVRAIALGSTSGLAR-GDEVRNTGGPIEVP 79 (461)
T ss_pred CccEEEEEECcEEEEEECCCCCcCccCEEEEecCCC-cEEEEEEEEcCCCeEEEEEecCccCCCC-CCEEEeCCCceEEE
Confidence 47999999999999999876 89999999964333 378999999 999999999999999995 99999999999999
Q ss_pred CCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh
Q 015796 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (400)
Q Consensus 97 vg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L 176 (400)
+|++|||||+|++|+|||+.+++....++++++.||||++|.++++||+||||+||+|+|||||||+||||++|+|||+|
T Consensus 80 vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~L 159 (461)
T PRK12597 80 VGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVL 159 (461)
T ss_pred cChhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHH
Confidence 99999999999999999999887777789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+.||+++..+.+ +| +|||++||||.+|+.+|++++.+.++|+||++|++|+|+||.+|++++|+|
T Consensus 160 l~~~~~~~~~~~----~d-----------v~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a 224 (461)
T PRK12597 160 MMELIFNISKQH----SG-----------SSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTG 224 (461)
T ss_pred HHHHHHHHHhhC----CC-----------EEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHH
Confidence 999998876311 33 999999999988888888999988999999999999999999999999999
Q ss_pred HHHHHHhhhhC-CCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeec
Q 015796 257 LTTAEYLAYEC-GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP 335 (400)
Q Consensus 257 ~tiAEyfr~d~-G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~ 335 (400)
+|+||||| |+ |+||||++||+||||+|+||||+++||||+++||||++|++|++|+|||++ .++||||+||+|++|
T Consensus 225 ~tiAEyfr-d~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~--~~~GSIT~i~tVl~~ 301 (461)
T PRK12597 225 LTIAEYLR-DEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIAS--TKNGSITSIQAVYVP 301 (461)
T ss_pred HHHHHHHH-HhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcC--CCCccccEEEEEEec
Confidence 99999999 66 999999999999999999999999999999999999999999999999997 358999999999999
Q ss_pred CCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 336 NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 336 ~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
+||++|||+|++++||||||+|||+||++||||||||+.|+||+|+.. +..++|+++|+++
T Consensus 302 ~dD~~dPI~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~----i~~~~h~~~a~~~ 362 (461)
T PRK12597 302 ADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPL----VVGERHYDAAIEV 362 (461)
T ss_pred CCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccccccccc----cCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999543 3347899998764
No 17
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=8.1e-101 Score=787.11 Aligned_cols=348 Identities=20% Similarity=0.278 Sum_probs=326.2
Q ss_pred EEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCcCCc
Q 015796 23 TVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDML 102 (400)
Q Consensus 23 ~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~~lL 102 (400)
+|++|.|.++++.|+..+++||+|+|. ++....|+|++++++.+.+++|+++.|++. |++|.+||++++||||++||
T Consensus 4 ~V~~v~~~i~~v~Gl~~~~~ge~~~~~--~~~~~~g~V~~~~~~~v~~~~l~~~~gi~~-G~~V~~tg~~~~vpvg~~lL 80 (507)
T PRK07165 4 KIKSIFDYIVEVKGEYDYQQNQFFTLK--NNPNVKAFVISATEDKAYLLINNEKGKIKI-NDELIELNNTNKVKTSKEYF 80 (507)
T ss_pred EEEEEeceEEEEEcccCCCcCCEEEEC--CCCeEEEEEEEEeCCeEEEEEccCccCCCC-CCEEEECCCccEEECCcccc
Confidence 789999999999999889999999994 333478999999999999999999999995 99999999999999999999
Q ss_pred ceEEcCCCCccCCCCCCCC-----CceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh-
Q 015796 103 GRIFNGSGKPIDNGPPILP-----EAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI- 176 (400)
Q Consensus 103 GrV~D~lG~Pld~~~~~~~-----~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L- 176 (400)
|||+|++|+|||+.+++.. ...++++..||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 81 GRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~la 160 (507)
T PRK07165 81 GKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIA 160 (507)
T ss_pred CCEECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHHH
Confidence 9999999999999986655 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+.+|++|.+ .+++|||++||||.+++.+|++++.+.|+|+||++|++|+ +||.+|+++||+|
T Consensus 161 l~~I~~q~~-----------------~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~ats-d~~~~r~~ap~~a 222 (507)
T PRK07165 161 LNTIINQKN-----------------TNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPS-TSPYEQYLAPYVA 222 (507)
T ss_pred HHHHHHhcC-----------------CCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCC-CCHHHHHHHHHHH
Confidence 788988854 3468999999999999999999999999999999999998 5999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecC
Q 015796 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN 336 (400)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~ 336 (400)
||+||||| ++ +|||+++|||||||+|+||||+++||||+++||||++|+.|++|+||||++++ +||||+||+|++++
T Consensus 223 ~tiAEyfr-d~-~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~g-~GSITalpiV~t~~ 299 (507)
T PRK07165 223 MAHAENIS-YN-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFKN-RKTITALPILQTVD 299 (507)
T ss_pred HHHHHHHH-hc-CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCCC-CCceEEEEEEECCC
Confidence 99999999 77 99999999999999999999999999999999999999999999999999864 78999999999999
Q ss_pred CCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 337 DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 337 ~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
||++|||||+++|||||||||||+||++||||||||+.|+||+|+.+++ +.|+++|..
T Consensus 300 dDis~pIpdnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~~~q~-----~~~~~~a~~ 357 (507)
T PRK07165 300 NDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQS-----KTITKVAGE 357 (507)
T ss_pred CCCCCcchhhhccccCeEEEEcHHHHhCCCCCCcCCccchhhccccccC-----HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876 456666643
No 18
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=4.8e-101 Score=797.77 Aligned_cols=355 Identities=29% Similarity=0.443 Sum_probs=325.6
Q ss_pred eeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCcC
Q 015796 21 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLD 100 (400)
Q Consensus 21 ~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~~ 100 (400)
.|+|.+|+|++|+++|+.++++||+|+|. +..+.|||++++++.+++|+|++++||++ |++|.+||++++|++|++
T Consensus 1 ~G~I~~V~Gpvv~a~g~~~~~~gE~v~v~---~~~l~gEVi~~~~d~a~iqvye~t~Gl~~-G~~V~~tg~plsV~lGpg 76 (578)
T TIGR01043 1 KGRIIRVSGPLVVADGMKGAQMYEVVKVG---EEGLIGEIIRIEGDKAFIQVYEETSGIKP-GEPVVGTGAPLSVELGPG 76 (578)
T ss_pred CCEEEEEECCEEEEecCCCCCcCCEEEEC---CCcEEEEEEEEcCCeEEEEECCCCCCCCC-CCEEEECCCccEEEcCHH
Confidence 38999999999999999889999999994 23479999999999999999999999996 999999999999999999
Q ss_pred CcceEEcCCCCccCCCCC----C----------CCC--------------------------------------------
Q 015796 101 MLGRIFNGSGKPIDNGPP----I----------LPE-------------------------------------------- 122 (400)
Q Consensus 101 lLGrV~D~lG~Pld~~~~----~----------~~~-------------------------------------------- 122 (400)
|||||+|++|||||+..+ . ...
T Consensus 77 lLGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v 156 (578)
T TIGR01043 77 LLGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEI 156 (578)
T ss_pred HhcceeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceE
Confidence 999999999999998632 0 111
Q ss_pred -----------------------------ceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCCh
Q 015796 123 -----------------------------AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (400)
Q Consensus 123 -----------------------------~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GK 173 (400)
+.||+.. |+++++|.++++||.||+|+||+|+||+||||++|||++|+||
T Consensus 157 ~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GK 235 (578)
T TIGR01043 157 VEIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGK 235 (578)
T ss_pred EEeccCCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCH
Confidence 1567766 7889999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhh-------cCCCccEEEEEeCCCCCH
Q 015796 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEE-------NGSMERVTLFLNLANDPT 246 (400)
Q Consensus 174 t~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~-------~g~l~~t~vv~~t~~~~~ 246 (400)
|+|++||++++. +| +|||++||||.+|+.++.+++++ .++|+||++|+||||+|+
T Consensus 236 T~l~~~lak~~~-------ad-----------ivVyvg~GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~ 297 (578)
T TIGR01043 236 TVTQHQLAKWSD-------AD-----------IVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPV 297 (578)
T ss_pred HHHHHHHHhcCC-------CC-----------EEEEEEeccChHHHHHHHHHhHhhcccccccccccceEEEEECCCCCH
Confidence 999999999865 55 99999999997766666677743 568999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCC-----C
Q 015796 247 IERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE-----G 321 (400)
Q Consensus 247 ~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~-----~ 321 (400)
++|++++|+|+||||||| |||+|||+|+||+||||+|+||||+++||||+++|||+|||++|++||||||++. +
T Consensus 298 ~aR~~s~ytg~TiAEYfR-D~G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~ 376 (578)
T TIGR01043 298 AAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEE 376 (578)
T ss_pred HHHHHHHHHHHHHHHHHH-HCCCCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCCC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999984 2
Q ss_pred CCCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccc--cCCCCCchhHHHhhhc
Q 015796 322 RKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA--IGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 322 ~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~--~~~~~~~~~h~~~~~~ 399 (400)
++||||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+|+.+ +..+.++++|.+.+++
T Consensus 377 r~GSIT~i~aVs~~ggD~sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~ 456 (578)
T TIGR01043 377 RVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDE 456 (578)
T ss_pred CCccEeEEEEEECCCCCCCccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhccccccccccccCHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999987 2333478999998875
No 19
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=2.3e-100 Score=782.68 Aligned_cols=358 Identities=27% Similarity=0.390 Sum_probs=325.8
Q ss_pred cceeeEEEEEECCEEEEecCC--CCCCCcEEEEEeCC--Cc--eeeEEEEEEeC-CeEEEEEccCCCCCccCCCEEEEcC
Q 015796 18 AMEYRTVTGVAGPLVILDKVK--GPKYYEIVNIRLGD--GT--MRRGQVLEVDG-EKAVVQVFEGTSGIDNKFTTVQFTG 90 (400)
Q Consensus 18 ~~~~G~V~~I~G~lv~v~gl~--~~~iGEl~~v~~~~--g~--~~~geVi~~~~-~~~~l~~~~~~~Gl~~~g~~V~~tg 90 (400)
.+.+|+|++|.|.++++++.. .+.+||+|.+...+ +. .+.+||++|.+ +.+.+++|++++|++. |++|..++
T Consensus 13 ~~~~G~V~~v~G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~-G~~V~~tg 91 (494)
T CHL00060 13 EKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMR-GMEVIDTG 91 (494)
T ss_pred cccceEEEEEEccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCC-CCEEEeCC
Confidence 355699999999999999874 23449999995323 31 47899999999 9999999999999995 99999999
Q ss_pred CeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCC
Q 015796 91 EVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAG 170 (400)
Q Consensus 91 ~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G 170 (400)
++++||+|++|||||+|++|+|||+.+++....++++++.||+|++|.+++++|+||||+||+|+|||||||+||||++|
T Consensus 92 ~~~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~G 171 (494)
T CHL00060 92 APLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAG 171 (494)
T ss_pred CcceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCC
Confidence 99999999999999999999999999887777788999999999999999999999999999999999999999999999
Q ss_pred CChhhhHHHHHHH-hccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCC-------CccEEEEEeCC
Q 015796 171 LPHNEIAAQICRQ-AGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGS-------MERVTLFLNLA 242 (400)
Q Consensus 171 ~GKt~L~~~i~~~-~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~-------l~~t~vv~~t~ 242 (400)
+|||+|+.|++++ +. +. +.+|||++||||.+|+.+|++++.+.++ ++||++|++|+
T Consensus 172 vGKs~L~~~~~~~~~~-------~~---------~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~ats 235 (494)
T CHL00060 172 VGKTVLIMELINNIAK-------AH---------GGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQM 235 (494)
T ss_pred CChhHHHHHHHHHHHH-------hc---------CCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECC
Confidence 9999999999987 42 21 1389999999998887777788877554 55899999999
Q ss_pred CCCHHHHHhHHHHHHHHHHHhhhhCCC-eEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCC
Q 015796 243 NDPTIERIITPRIALTTAEYLAYECGK-HVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG 321 (400)
Q Consensus 243 ~~~~~~r~~a~~~a~tiAEyfr~d~G~-~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~ 321 (400)
|+||.+|++++|+|+|+||||| |+|+ ||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 236 d~p~~~R~~a~~~A~tiAEyfr-d~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~-- 312 (494)
T CHL00060 236 NEPPGARMRVGLTALTMAEYFR-DVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST-- 312 (494)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HcCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCC--
Confidence 9999999999999999999999 7776 99999999999999999999999999999999999999999999999985
Q ss_pred CCCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCcccc-CccccCCCCCchhHHHhhhcC
Q 015796 322 RKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL-MKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 322 ~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~-~~~~~~~~~~~~~h~~~~~~~ 400 (400)
++||||+||+|++|+||++|||+|+++|||||||||||+||++||||||||+.|+||+ ++.+ +.++|+++|+++
T Consensus 313 ~~GSITai~tVl~~gdD~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~-----v~~~h~~~a~~~ 387 (494)
T CHL00060 313 KEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRI-----VGEEHYETAQRV 387 (494)
T ss_pred CCCCeeEEEEEECCCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhccccc-----CCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999 5553 557999999864
No 20
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.9e-100 Score=775.06 Aligned_cols=360 Identities=24% Similarity=0.401 Sum_probs=333.3
Q ss_pred cccccceeeEEEEEECCEEEEecCC-CCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCe
Q 015796 14 TLEVAMEYRTVTGVAGPLVILDKVK-GPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEV 92 (400)
Q Consensus 14 ~~~~~~~~G~V~~I~G~lv~v~gl~-~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~ 92 (400)
...+.+.+|+|++|.|++++++|+. .+++||+|+|+..+++...+||++|+++.+.+++|+++.|++. |++|.+++++
T Consensus 11 ~~~~~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~V~~tg~~ 89 (442)
T PRK08927 11 DIDTLVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRR-GCRAVIANAA 89 (442)
T ss_pred cCCcceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCccCCCC-CCEEEeCCCc
Confidence 4678899999999999999999984 6899999999654554589999999999999999999999994 9999999999
Q ss_pred eeEeCCcCCcceEEcCCCCccCCCCCCCCC-ceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCC
Q 015796 93 LKTPVSLDMLGRIFNGSGKPIDNGPPILPE-AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 171 (400)
Q Consensus 93 ~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~ 171 (400)
++||+|++|||||+|++|+|||+.+++... .++++++.||||++|.+++++|+||||+||+|+||++|||++|||++|+
T Consensus 90 ~~v~vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~ 169 (442)
T PRK08927 90 AAVRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGV 169 (442)
T ss_pred cEEECChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCC
Confidence 999999999999999999999999877654 5789999999999999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHH-HHHHHhhhcCCCccEEEEEeCCCCCHHHHH
Q 015796 172 PHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQ-FFKRDFEENGSMERVTLFLNLANDPTIERI 250 (400)
Q Consensus 172 GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~-~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~ 250 (400)
|||+|+++|+++.. ++ ++||++||||.+|+. |+++.+.+++ ++||++|++|+|+||.+|+
T Consensus 170 GKTtLL~~I~~~~~-------~d-----------~~v~~~iGER~rEv~ef~~~~l~~~~-l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 170 GKSVLLSMLARNAD-------AD-----------VSVIGLIGERGREVQEFLQDDLGPEG-LARSVVVVATSDEPALMRR 230 (442)
T ss_pred CHHHHHHHHHhccC-------CC-----------EEEEEEEecCcHHHHHHHHHHhhccC-ceeEEEEEECCCCCHHHHH
Confidence 99999999998764 33 788999999976664 4446677766 9999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEe
Q 015796 251 ITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIP 330 (400)
Q Consensus 251 ~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~ 330 (400)
+++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+...++||||+||
T Consensus 231 ~a~~~a~tiAEyfr-d~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~~~~GSIT~i~ 309 (442)
T PRK08927 231 QAAYLTLAIAEYFR-DQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLF 309 (442)
T ss_pred HHHHHHHHHHHHHH-HCCCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCCCCCeeeeeee
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999644589999999
Q ss_pred eEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 331 ILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 331 ~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
+|++|+||++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++ ++|++.|++
T Consensus 310 tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~~~~~~-----~~~~~~a~~ 373 (442)
T PRK08927 310 TVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCND-----PEENPLVRR 373 (442)
T ss_pred eeEccCCCCCCchhhhhhccccEEEEEcHHHHhCCCCCccCCcccccccccccCC-----HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998776 567766654
No 21
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=2.5e-100 Score=778.53 Aligned_cols=355 Identities=25% Similarity=0.360 Sum_probs=331.9
Q ss_pred eEEEEEECCEEEEecC-CCCCCCcEEEEEeCCCceeeEEEEE-EeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCc
Q 015796 22 RTVTGVAGPLVILDKV-KGPKYYEIVNIRLGDGTMRRGQVLE-VDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSL 99 (400)
Q Consensus 22 G~V~~I~G~lv~v~gl-~~~~iGEl~~v~~~~g~~~~geVi~-~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~ 99 (400)
|+|++|.|++|+++.. ..+.+++.+.+.. +..+.+||++ |+++.+.+++|++++|++. |++|.+|+++++||||+
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~--~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~-G~~V~~tg~~~~VpVg~ 77 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGR--EGEVVVEVLSQLDAHHVRGIALTPTQGLAR-GMPVRDSGGPLKAPVGK 77 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEecC--CCcEEEeeeeEecCCeEEEEEccCcccCCC-CCEEEecCCceEEEcCh
Confidence 7999999999999873 5789999999853 4467889999 9999999999999999995 99999999999999999
Q ss_pred CCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhHHH
Q 015796 100 DMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ 179 (400)
Q Consensus 100 ~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~ 179 (400)
+|||||+|++|+|||+.+++....+++++++||+|++|.+++++|+||||+||+|+|||||||++|||++|+|||+|+.|
T Consensus 78 ~lLGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~ 157 (449)
T TIGR03305 78 PTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTE 157 (449)
T ss_pred hhcCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHH
Confidence 99999999999999999887777788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHH
Q 015796 180 ICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259 (400)
Q Consensus 180 i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~ti 259 (400)
|+++..+. ..++|||++||||.+|+.+|++++.+.++|+||++|++|+|+||++|++++|+|+|+
T Consensus 158 ~~~~~~~~---------------~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~ti 222 (449)
T TIGR03305 158 MIHNMVGQ---------------HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTM 222 (449)
T ss_pred HHHHHHhc---------------CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 99885410 123999999999999998899999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCCC
Q 015796 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDI 339 (400)
Q Consensus 260 AEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d~ 339 (400)
|||||+++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++|+||+
T Consensus 223 AEyfrd~~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~--~~GSIT~i~~V~~~~dD~ 300 (449)
T TIGR03305 223 AEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATT--SDGAITSIQAVYVPADDF 300 (449)
T ss_pred HHHHHHhcCCceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCC--CCcCeeEEEEEEccCCCC
Confidence 999994499999999999999999999999999999999999999999999999999984 589999999999999999
Q ss_pred CCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 340 THPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 340 ~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
+|||+++++|||||||||||+||++||||||||+.|+||+|++. ++.++|+++|+++
T Consensus 301 ~dPi~d~~~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~----i~~~~h~~~a~~~ 357 (449)
T TIGR03305 301 TDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPG----IVGERHYDLAREV 357 (449)
T ss_pred CCchhHhhhhhcceEEEEcHHHHhCCCCCccCCCcchhhcCCcc----cCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999643 4568999999864
No 22
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=3e-99 Score=785.43 Aligned_cols=357 Identities=30% Similarity=0.479 Sum_probs=329.9
Q ss_pred eeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCc
Q 015796 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSL 99 (400)
Q Consensus 20 ~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~ 99 (400)
.+|+|++|+|++|+++++..+++||+|+|. +..+.|||++++++.+.+|+|++|+||++ |++|.+||++++|++|+
T Consensus 3 ~~G~I~~V~Gpvv~~~~~~~~~~~E~v~v~---~~~l~gEVi~~~~d~a~iqv~e~T~Gl~~-G~~V~~tg~plsv~lGp 78 (586)
T PRK04192 3 TKGKIVRVSGPLVVAEGMGGARMYEVVRVG---EEGLIGEIIRIEGDKATIQVYEETSGIKP-GEPVEFTGEPLSVELGP 78 (586)
T ss_pred ceeEEEEEECcEEEEEeCCCCCccCEEEEC---CCcEEEEEEEEeCCceEEEEecCCcCCCC-CCEEEeCCCccEEEcCH
Confidence 579999999999999999889999999993 34589999999999999999999999996 99999999999999999
Q ss_pred CCcceEEcCCCCccCCCCCC--------------CC--------------------------------------------
Q 015796 100 DMLGRIFNGSGKPIDNGPPI--------------LP-------------------------------------------- 121 (400)
Q Consensus 100 ~lLGrV~D~lG~Pld~~~~~--------------~~-------------------------------------------- 121 (400)
+|||||||++|||||+.++. ..
T Consensus 79 glLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~ 158 (586)
T PRK04192 79 GLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGT 158 (586)
T ss_pred HhcCCeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceE
Confidence 99999999999999986521 10
Q ss_pred -------------------------------CceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCC
Q 015796 122 -------------------------------EAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAG 170 (400)
Q Consensus 122 -------------------------------~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G 170 (400)
.++||++.++|. .+|.++++||.||+|+||+|+||+||||++|||++|
T Consensus 159 ~~~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G 237 (586)
T PRK04192 159 VKEIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFG 237 (586)
T ss_pred EEEEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCCC
Confidence 134688777666 899999999999999999999999999999999999
Q ss_pred CChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhh-------cCCCccEEEEEeCCC
Q 015796 171 LPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEE-------NGSMERVTLFLNLAN 243 (400)
Q Consensus 171 ~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~-------~g~l~~t~vv~~t~~ 243 (400)
+|||+|++||++|+. +| ++||++||||.+|+.++.++|++ .++|+||++|+||||
T Consensus 238 ~GKTvl~~~iak~a~-------ad-----------ivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn 299 (586)
T PRK04192 238 SGKTVTQHQLAKWAD-------AD-----------IVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSN 299 (586)
T ss_pred CCHHHHHHHHHhcCC-------CC-----------EEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCC
Confidence 999999999999975 55 99999999997777777788764 458999999999999
Q ss_pred CCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCC---
Q 015796 244 DPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE--- 320 (400)
Q Consensus 244 ~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~--- 320 (400)
||+++|++++|+|+|+||||| |||+||||++||+||||+|+||||+++||||+++|||+|||++|++||||||++.
T Consensus 300 ~Pv~aR~~s~ytgiTiAEYfR-d~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~ 378 (586)
T PRK04192 300 MPVAAREASIYTGITIAEYYR-DMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLG 378 (586)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccCC
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCcccc--CCCCCchhHHHhhh
Q 015796 321 GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAI--GEGMTRRDHSDVSN 398 (400)
Q Consensus 321 ~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~--~~~~~~~~h~~~~~ 398 (400)
+.+||||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++.+. ..+.++++|.+.++
T Consensus 379 ~~~GSIT~i~aVs~pggD~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~ 458 (586)
T PRK04192 379 GEEGSVTIIGAVSPPGGDFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRD 458 (586)
T ss_pred CCCcceEEEEEEECCCCCCCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhcccchhhcccCHHHHHHHH
Confidence 2489999999999999999999999999999999999999999999999999999999999884 34688999999988
Q ss_pred cC
Q 015796 399 QV 400 (400)
Q Consensus 399 ~~ 400 (400)
++
T Consensus 459 ~~ 460 (586)
T PRK04192 459 EA 460 (586)
T ss_pred HH
Confidence 63
No 23
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=2.2e-99 Score=782.14 Aligned_cols=355 Identities=28% Similarity=0.447 Sum_probs=324.5
Q ss_pred eeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCc
Q 015796 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSL 99 (400)
Q Consensus 20 ~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~ 99 (400)
++|+|++|+|++|+++|++.+++||+|+|. + ..+.||||+|+++.+.+|+|++++||++ |++|..||++++|++|+
T Consensus 1 ~~G~V~~v~G~vV~a~g~~~~~~gE~v~v~--~-~~l~gEVI~l~~d~a~iq~ye~t~Gl~~-G~~V~~tg~~lsv~lGp 76 (591)
T TIGR01042 1 EYGYIYKVSGPVVVAENMAGAAMYELVRVG--H-DELVGEIIRLEGDKATIQVYEETSGLTV-GDPVLRTGKPLSVELGP 76 (591)
T ss_pred CceEEEEEECCEEEEecCCCCCcCCEEEEC--C-CceEEEEEEEcCCeEEEEEccCccCCCC-CCEEEeCCCccEEEcCH
Confidence 479999999999999999889999999993 2 2379999999999999999999999996 99999999999999999
Q ss_pred CCcceEEcCCCCccCCCC----C-----------CCC-------------------------------------------
Q 015796 100 DMLGRIFNGSGKPIDNGP----P-----------ILP------------------------------------------- 121 (400)
Q Consensus 100 ~lLGrV~D~lG~Pld~~~----~-----------~~~------------------------------------------- 121 (400)
+|||||+|++|||||+.+ . +..
T Consensus 77 glLG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~ 156 (591)
T TIGR01042 77 GILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRAR 156 (591)
T ss_pred HHhhcccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCc
Confidence 999999999999999753 1 100
Q ss_pred --------------------------------CceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCC
Q 015796 122 --------------------------------EAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (400)
Q Consensus 122 --------------------------------~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~ 169 (400)
.+.||+.. |+++++|.++++||.||+|+||+|+||+||||++|||++
T Consensus 157 g~v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~ 235 (591)
T TIGR01042 157 GTITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAF 235 (591)
T ss_pred eEEEEEccCCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCC
Confidence 02578887 889999999999999999999999999999999999999
Q ss_pred CCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHh---------hhcCCCccEEEEEe
Q 015796 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDF---------EENGSMERVTLFLN 240 (400)
Q Consensus 170 G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l---------~~~g~l~~t~vv~~ 240 (400)
|+|||+|++||+++++ +| ++||++||||.+|+.++.++| .+.++|+||++|+|
T Consensus 236 G~GKT~l~~~lak~s~-------aD-----------viVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~ 297 (591)
T TIGR01042 236 GCGKTVISQSLSKYSN-------SD-----------AIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVAN 297 (591)
T ss_pred CcCHHHHHHHHHhccC-------cC-----------EEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEE
Confidence 9999999999999876 66 899999999966555555665 23467999999999
Q ss_pred CCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCC
Q 015796 241 LANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE 320 (400)
Q Consensus 241 t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~ 320 (400)
|||+|+++|++++|+|+||||||| |||+||||++||+||||+|+||||+++||||+++|||+|+|+.|++||||||++.
T Consensus 298 tsd~p~~~R~~s~ytg~tiAEYfR-D~G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~ 376 (591)
T TIGR01042 298 TSNMPVAAREASIYTGITLAEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVK 376 (591)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHH-hcCCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCc
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999974
Q ss_pred -----CCCCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCcccc--CCCCCchhH
Q 015796 321 -----GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAI--GEGMTRRDH 393 (400)
Q Consensus 321 -----~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~--~~~~~~~~h 393 (400)
.++||||+|++|++|+||++|||++++++|+|+||+|||+||++||||||||+.|+||+++.+. ..+. .++|
T Consensus 377 ~~~~~~~~GSIT~i~aVs~~ggD~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~~~l~~~~~~~-~~~~ 455 (591)
T TIGR01042 377 CLGSPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKF-YPEF 455 (591)
T ss_pred cCCCCCCCccEEEEEEEECCCCCCCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhhhhcccccccC-CHHH
Confidence 3479999999999999999999999999999999999999999999999999999999999864 3333 6889
Q ss_pred HHhhhc
Q 015796 394 SDVSNQ 399 (400)
Q Consensus 394 ~~~~~~ 399 (400)
++.+++
T Consensus 456 ~~~~~~ 461 (591)
T TIGR01042 456 VPLRTK 461 (591)
T ss_pred HHHHHH
Confidence 888875
No 24
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.1e-98 Score=763.55 Aligned_cols=363 Identities=24% Similarity=0.409 Sum_probs=338.4
Q ss_pred hcccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCc---eeeEEEEEEeCCeEEEEEccCCCCCccCCCEEE
Q 015796 11 EEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGT---MRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQ 87 (400)
Q Consensus 11 ~~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~---~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~ 87 (400)
.....++.+.+|+|++|.|+++++.|+. +++||+|.|+..++. ...|||++|+++.+.+++|+++.|++. |+.|+
T Consensus 18 ~~~~~~~~~~~g~v~~v~g~~~~~~g~~-~~~ge~c~i~~~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~V~ 95 (451)
T PRK05688 18 AISLPAQPVVEGRLLRMVGLTLEAEGLR-AAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAP-GARVV 95 (451)
T ss_pred HHhcCCccceeeEEEEEEecEEEEecCC-CCCCCEEEEecCCCccccceEEEEEEEcCCEEEEEEccCccCCCC-CCEEE
Confidence 3445688899999999999999999986 899999999643442 478999999999999999999999996 99999
Q ss_pred EcCCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeec
Q 015796 88 FTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFS 167 (400)
Q Consensus 88 ~tg~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g 167 (400)
+|+++++||+|++|||||+|++|+|||+.+++....++++++.||+|++|.++++||+|||++||.|+||++|||++|||
T Consensus 96 ~tg~~~~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G 175 (451)
T PRK05688 96 PLADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFA 175 (451)
T ss_pred ECCCccEEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEEC
Confidence 99999999999999999999999999999887777788999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHH
Q 015796 168 AAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTI 247 (400)
Q Consensus 168 ~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~ 247 (400)
++|+|||+|+++|+++.. .+ ++|+++||+|.+++.++.+.+...+.++||++|++|+|+||.
T Consensus 176 ~sG~GKSTLl~~I~g~~~-------~d-----------v~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~ 237 (451)
T PRK05688 176 GTGVGKSVLLGMMTRFTE-------AD-----------IIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPL 237 (451)
T ss_pred CCCCCHHHHHHHHhCCCC-------CC-----------EEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHH
Confidence 999999999999876542 23 789999999988888888888888889999999999999999
Q ss_pred HHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCcee
Q 015796 248 ERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSIT 327 (400)
Q Consensus 248 ~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT 327 (400)
+|++++++|+|+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+....+||||
T Consensus 238 ~r~~a~~~a~aiAEyfr-d~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~GSIT 316 (451)
T PRK05688 238 MRLRAAMYCTRIAEYFR-DKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSIT 316 (451)
T ss_pred HHHHHHHHHHHHHHHHH-HCCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCCCCCceee
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999998643489999
Q ss_pred EEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 328 ~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
+||+|++|+||++|||+|+++|||||||||||+||++||||||||+.|+||+|+.++ .++|+++|++
T Consensus 317 ai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~-----~~~~~~~a~~ 383 (451)
T PRK05688 317 AFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVV-----DPEHLRRAQR 383 (451)
T ss_pred EEEEEEecCCCCCCchHHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccchhhC-----CHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998864 5899999965
No 25
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=3.4e-98 Score=763.75 Aligned_cols=362 Identities=27% Similarity=0.476 Sum_probs=338.8
Q ss_pred hcccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCce-eeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEc
Q 015796 11 EEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTM-RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFT 89 (400)
Q Consensus 11 ~~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~-~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~t 89 (400)
.....++.+.+|+|++|.|++++++|+. +++||+|+|+..+|.. ..|||++|+++.+.+|+|+++.|++. |++|.+|
T Consensus 15 ~~~~~~~~~~~G~V~~v~g~~i~~~g~~-~~~ge~~~i~~~~g~~~~~~eVv~~~~~~~~l~~~~~t~gi~~-g~~V~~t 92 (441)
T PRK09099 15 ELAALPAVRRTGKVVEVIGTLLRVSGLD-VTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLSR-GTRVIGL 92 (441)
T ss_pred HHhcCCcceEeeEEEEEECCEEEEeccC-CCCCCEEEEecCCCCeeeEEEEEEEECCEEEEEEccCCcCCCC-CCEEEeC
Confidence 3445688899999999999999999986 9999999996445543 78999999999999999999999995 9999999
Q ss_pred CCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCC
Q 015796 90 GEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (400)
Q Consensus 90 g~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~ 169 (400)
+++++||+|++|||||+|++|+|||+.+++....++++++.||+|++|.++++||+||+++||.++|+++|||++|||++
T Consensus 93 g~~~~v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~s 172 (441)
T PRK09099 93 GRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPA 172 (441)
T ss_pred CCccEEEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCC
Confidence 99999999999999999999999999887777778899999999999999999999999999999999999999999999
Q ss_pred CCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHH
Q 015796 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (400)
Q Consensus 170 G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r 249 (400)
|+|||+|+++|+++.. ++ .+||++||||.+++.+|.+.+.+.+.++||++|++|+|+||.+|
T Consensus 173 G~GKTtLl~~ia~~~~-------~d-----------~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r 234 (441)
T PRK09099 173 GVGKSTLMGMFARGTQ-------CD-----------VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIER 234 (441)
T ss_pred CCCHHHHHHHHhCCCC-------CC-----------eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHH
Confidence 9999999999987653 33 68999999998888888888877778999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEE
Q 015796 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQI 329 (400)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i 329 (400)
++++|+|+|+||||| |+||||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||. .++||||+|
T Consensus 235 ~~a~~~a~tiAEyfr-d~G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~--~~~GSIT~i 311 (441)
T PRK09099 235 AKAAYVATAIAEYFR-DRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM--GETGSITAL 311 (441)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcC--CCCcchhee
Confidence 999999999999999 99999999999999999999999999999999999999999999999999996 358999999
Q ss_pred eeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 330 PILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 330 ~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|+|++++||++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++ +++|+++|+++
T Consensus 312 ~tVl~~~dd~~dpI~d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~-----~~~~~~~a~~l 377 (441)
T PRK09099 312 YTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVV-----PREHVQAAGRL 377 (441)
T ss_pred EEEEecCCCcCCcchhhhheecceEEEEcHHHHhCCCCCccCCccccCccchhcC-----CHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998854 57999999864
No 26
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=7.7e-97 Score=750.50 Aligned_cols=352 Identities=26% Similarity=0.447 Sum_probs=332.7
Q ss_pred eEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCcCC
Q 015796 22 RTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDM 101 (400)
Q Consensus 22 G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~~l 101 (400)
|+|++|.|++++++|+ .+++||+|+|...++.+..|||++++++.+.+++|+++.|++. |++|.+||++++||+|++|
T Consensus 1 G~v~~v~g~~v~v~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~t~gl~~-G~~V~~tg~~~~v~vg~~l 78 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGL-RAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRP-GARVFPLEGPLRLPVGDSL 78 (411)
T ss_pred CEEEEEECcEEEEEeC-CCCcCCEEEEEcCCCCeEEEEEEEecCCEEEEEEccCccCCCC-CCEEEECCCccEEEcchhh
Confidence 7999999999999998 7999999999644565678999999999999999999999996 9999999999999999999
Q ss_pred cceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhHHHHH
Q 015796 102 LGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 102 LGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
||||+|++|+|||+.+++....+|++++.||+|++|.++++++.||+++||.++|+++|||++|||++|+|||+|+.+|+
T Consensus 79 lGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~ 158 (411)
T TIGR03496 79 LGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMA 158 (411)
T ss_pred cCCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHHHh
Confidence 99999999999999988777788999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHH
Q 015796 182 RQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAE 261 (400)
Q Consensus 182 ~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAE 261 (400)
++.. ++ +.||++||||.+++.+|++++.+.++|+||++|++|+|+||.+|++++|+|+|+||
T Consensus 159 ~~~~-------~~-----------~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAE 220 (411)
T TIGR03496 159 RYTE-------AD-----------VVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAE 220 (411)
T ss_pred cCCC-------CC-----------EEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6643 33 77899999998888888888888889999999999999999999999999999999
Q ss_pred HhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCCCCC
Q 015796 262 YLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITH 341 (400)
Q Consensus 262 yfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d~~d 341 (400)
||| ++|+||||++||+||||+|+||||+++||||+++|||+++|+.|++|+||||++.+++||||+||+|++|+||++|
T Consensus 221 yfr-~~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~tv~~~~dd~~d 299 (411)
T TIGR03496 221 YFR-DQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSITAFYTVLVEGDDQQD 299 (411)
T ss_pred HHH-HCCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccCCCCcceeEEEEEEccCCCCCC
Confidence 999 8999999999999999999999999999999999999999999999999999975458999999999999999999
Q ss_pred CcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 342 PTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 342 pi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
||+|++++||||||+|||+||++||||||||+.|+||+++.+ +.++|+++|++
T Consensus 300 pi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~-----~~~~~~~~a~~ 352 (411)
T TIGR03496 300 PIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDV-----VSPEHRQAARR 352 (411)
T ss_pred cchhhhcccccEEEEEchhHHhCCCCCccCCCcccccchhhh-----CCHHHHHHHHH
Confidence 999999999999999999999999999999999999999875 45799999874
No 27
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=9.7e-97 Score=749.97 Aligned_cols=352 Identities=28% Similarity=0.438 Sum_probs=325.7
Q ss_pred eEEEEEECCEEEEecCCCC-CCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCcC
Q 015796 22 RTVTGVAGPLVILDKVKGP-KYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLD 100 (400)
Q Consensus 22 G~V~~I~G~lv~v~gl~~~-~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~~ 100 (400)
|+|++|.|++++++|+..+ ++||+|+|+..++....|||++|+++.+.+++|++++|+++ |++|.+|+++++||+|++
T Consensus 1 G~v~~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~~~gi~~-G~~V~~tg~~~~i~vg~~ 79 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGL-GCAVFAREGPLAVRPHPS 79 (418)
T ss_pred CEEEEEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCCcCCCC-CCEEEECCCccEEEeChh
Confidence 7999999999999999864 99999999654554578999999999999999999999996 999999999999999999
Q ss_pred CcceEEcCCCCccCCCCCCCCC-ceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhHHH
Q 015796 101 MLGRIFNGSGKPIDNGPPILPE-AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ 179 (400)
Q Consensus 101 lLGrV~D~lG~Pld~~~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~ 179 (400)
|||||+|++|+|||+.+++... .++++++.||+|++|.+++++|.||+++||.++|+++|||++|||++|+|||+|+.+
T Consensus 80 lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~~ 159 (418)
T TIGR03498 80 WLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSM 159 (418)
T ss_pred hcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHHHHH
Confidence 9999999999999998776555 468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHH-HhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHH
Q 015796 180 ICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKR-DFEENGSMERVTLFLNLANDPTIERIITPRIALT 258 (400)
Q Consensus 180 i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~-~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~t 258 (400)
|+++.. ++ ..+|+++|||.+++.+|.+ .+.+++ |+||++|++|+|+||.+|++++|+|+|
T Consensus 160 I~~~~~-------~~-----------~gvi~~iGer~~ev~~~~~~~l~~~~-~~~tvvv~atsd~~~~~r~~a~~~a~~ 220 (418)
T TIGR03498 160 LARNTD-------AD-----------VVVIALVGERGREVREFLEDDLGEEG-LKRSVVVVATSDESPLMRRQAAYTATA 220 (418)
T ss_pred HhCCCC-------CC-----------EEEEEEEeeechHHHHHHHHhhhccc-cceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 886643 23 6789999999766665555 566555 999999999999999999999999999
Q ss_pred HHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCC
Q 015796 259 TAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDD 338 (400)
Q Consensus 259 iAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d 338 (400)
+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+....+||||+||+|++|+||
T Consensus 221 iAEyfr-d~G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~~~~GSIT~~~tVl~~gdd 299 (418)
T TIGR03498 221 IAEYFR-DQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDD 299 (418)
T ss_pred HHHHHH-HcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCCCCCcceeeeEEEeccCCC
Confidence 999999 8999999999999999999999999999999999999999999999999999863458999999999999999
Q ss_pred CCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 339 ITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 339 ~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
++|||+|+++|||||||+|||+||++||||||||+.|+||+|+.+++ ++|+++|++
T Consensus 300 ~~dpi~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~-----~~~~~~a~~ 355 (418)
T TIGR03498 300 HNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWS-----PEERKLVRR 355 (418)
T ss_pred CCCcchhhhheeeeeEEEECHHHHhCCCCCccCCcccccccchhhcC-----HHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776 589998874
No 28
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=1.2e-95 Score=744.13 Aligned_cols=351 Identities=26% Similarity=0.460 Sum_probs=328.1
Q ss_pred ccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 015796 17 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (400)
Q Consensus 17 ~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vp 96 (400)
+.+.+|+|++|.|.++++.+ ..+++||+|.|+. ++ ..|||++++++.+.+++|++++|+++ |++|.+||++++||
T Consensus 26 ~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~-~~--~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~v~~tg~~~~v~ 100 (440)
T PRK06820 26 GLRYRGPIVEIGPTLLRASL-PGVAQGELCRIEP-QG--MLAEVVSIEQEMALLSPFASSDGLRC-GQWVTPLGHMHQVQ 100 (440)
T ss_pred ceeEeeEEEEEECcEEEEEE-CCCCcCCEEEEec-CC--eEEEEEEEeCCeEEEEEccCccCCCC-CCEEEECCCCcEEE
Confidence 57788999999999999985 5699999999963 33 68999999999999999999999995 99999999999999
Q ss_pred CCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh
Q 015796 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (400)
Q Consensus 97 vg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L 176 (400)
+|++|||||+|++|||||+.+.. ...++++++.||+|++|.+++++|.||+|+||.|+|+++|||++|||++|+|||+|
T Consensus 101 vg~~llGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKStL 179 (440)
T PRK06820 101 VGADLAGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTL 179 (440)
T ss_pred echhhcCCEECccCCccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCCCCChHHH
Confidence 99999999999999999998765 45678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+++|+++.. ++ ++||++||||.+++.++.+++...+.++|+++|++++|+||.+|++++|+|
T Consensus 180 l~~I~~~~~-------~d-----------v~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a 241 (440)
T PRK06820 180 LGMLCADSA-------AD-----------VMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTA 241 (440)
T ss_pred HHHHhccCC-------CC-----------EEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 999987653 33 789999999977777777777777889999999999999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecC
Q 015796 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN 336 (400)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~ 336 (400)
+|+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++|+
T Consensus 242 ~tiAEyfr-d~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~--~~GSIT~i~tVl~~g 318 (440)
T PRK06820 242 TTIAEYFR-DRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS--DRGSITAFYTVLVEG 318 (440)
T ss_pred HHHHHHHH-HcCCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC--CCcceeEEEEEEccC
Confidence 99999999 999999999999999999999999999999999999999999999999999984 589999999999999
Q ss_pred CCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 337 DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 337 ~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
||++|||+|+++|||||||+|||+||++||||||||+.|+||+|+.+++ ++|++.|+.
T Consensus 319 dD~~dpI~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~-----~~~~~~a~~ 376 (440)
T PRK06820 319 DDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVS-----AGQLAMAQK 376 (440)
T ss_pred CCCCCcchhhhccccceEEEECHHHHhCCCCCccCCcccccccchhhCC-----HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998665 678877764
No 29
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.9e-96 Score=744.73 Aligned_cols=363 Identities=28% Similarity=0.452 Sum_probs=334.3
Q ss_pred hhhcccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCC-ceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEE
Q 015796 9 DMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDG-TMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQ 87 (400)
Q Consensus 9 ~~~~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g-~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~ 87 (400)
.......++.+.||+|++|.|++++++|+. +++||+|+|+..++ ....|||++|+++.+.+++|+++.|+++ |++|.
T Consensus 7 ~~~~~~~~~~~~~G~v~~v~g~~v~~~g~~-~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~t~gl~~-G~~V~ 84 (434)
T PRK08472 7 KNKLQKFNLSPRFGSITKISPTIIEADGLN-PSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKI-GDKVF 84 (434)
T ss_pred HHHHhcCCcceeeeEEEEEEccEEEEEecC-CCCCCEEEEecCCCCCceEEEEEEEeCCeEEEEEccCCCCCCC-CCEEE
Confidence 334445788999999999999999999987 89999999964331 3478999999999999999999999996 99999
Q ss_pred EcCCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeec
Q 015796 88 FTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFS 167 (400)
Q Consensus 88 ~tg~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g 167 (400)
+|+++++||+|++|||||+|++|||||+.+++...+++++++.||+|++|.+++++|.||+++||.++|+++|||++|||
T Consensus 85 ~tg~~~~v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G 164 (434)
T PRK08472 85 ISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFA 164 (434)
T ss_pred eCCCceEEEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEEC
Confidence 99999999999999999999999999999887767778999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHH-HHHHHHHhhhcCCCccEEEEEeCCCCCH
Q 015796 168 AAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET-AQFFKRDFEENGSMERVTLFLNLANDPT 246 (400)
Q Consensus 168 ~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~-~~~~~~~l~~~g~l~~t~vv~~t~~~~~ 246 (400)
++|+|||+|+.+|+++.. ++ ++||++||||.++ .+|+...+. +.+++|++|++|+|+||
T Consensus 165 ~sG~GKStLl~~i~~~~~-------~~-----------v~vi~~iGergrev~e~~~~~l~--~~l~~tvvV~atsddsp 224 (434)
T PRK08472 165 GSGVGKSTLMGMIVKGCL-------AP-----------IKVVALIGERGREIPEFIEKNLG--GDLENTVIVVATSDDSP 224 (434)
T ss_pred CCCCCHHHHHHHHhhccC-------CC-----------EEEEEeeCccchhHHHHHHHHhc--CcccceEEEEECCCCCH
Confidence 999999999999988754 34 8999999999655 455554443 34899999999999999
Q ss_pred HHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCce
Q 015796 247 IERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSI 326 (400)
Q Consensus 247 ~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSi 326 (400)
++|++++++|+++||||| |+|+||||++||+||||+|+|||++++||||+++||||++|+.|++|+||||+.. .+|||
T Consensus 225 ~~R~~~~~~a~~iAEyFr-d~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~-g~GSI 302 (434)
T PRK08472 225 LMRKYGAFCAMSVAEYFK-NQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEE-GKGSI 302 (434)
T ss_pred HHhhHHHHHHHHHHHHHH-HcCCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCC-CCcee
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999964 38999
Q ss_pred eEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 327 TQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 327 T~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|+||+|++|+||++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++ ++|+++|+++
T Consensus 303 T~~~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~~~~~-----~~~~~~a~~~ 371 (434)
T PRK08472 303 TAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIIS-----PEHKLAARKF 371 (434)
T ss_pred eEeEEEEecCCCCCCCchHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhcCC-----HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998766 6899998763
No 30
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.7e-96 Score=744.40 Aligned_cols=363 Identities=26% Similarity=0.383 Sum_probs=335.3
Q ss_pred hcccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCc---eeeEEEEEEeCCeEEEEEccCCCCCccCCCEEE
Q 015796 11 EEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGT---MRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQ 87 (400)
Q Consensus 11 ~~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~---~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~ 87 (400)
.....++.+.+|||++|.|.+|++.|+ .+++||+|.|+..++. ...+||++|+++.+++++|+++.|+.. |++|.
T Consensus 18 ~~~~~~~~~~~G~v~~v~g~~v~~~g~-~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~~~~~l~~~~~~~gi~~-g~~v~ 95 (455)
T PRK07960 18 KMAQLPAVRRYGRLTRATGLVLEATGL-QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILP-GARVY 95 (455)
T ss_pred HHhcCCccccccEEEEEEEEEEEEeCC-CCCCCCEEEEEeCCCccccceeeeEEEecCCEEEEEECCCccCCCC-CCEEE
Confidence 334568889999999999999999987 5899999999543441 368999999999999999999999996 99999
Q ss_pred Ec-------CCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccC
Q 015796 88 FT-------GEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARG 160 (400)
Q Consensus 88 ~t-------g~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkG 160 (400)
++ +++++||||++|||||+|++|+|||+++++....+++++++||+|++|.+++++|+||||+||.|+|+++|
T Consensus 96 ~~~~~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~G 175 (455)
T PRK07960 96 ARNISGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRG 175 (455)
T ss_pred ECCcccccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCC
Confidence 99 99999999999999999999999999988776777899999999999999999999999999999999999
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEe
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLN 240 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~ 240 (400)
||++|||++|+|||+|+++|+++.. .+ ++|+++||+|.+++.++++++.+.+.+++++||++
T Consensus 176 qri~I~G~sG~GKTTLL~~Ia~~~~-------~d-----------~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~ 237 (455)
T PRK07960 176 QRMGLFAGSGVGKSVLLGMMARYTQ-------AD-----------VIVVGLIGERGREVKDFIENILGAEGRARSVVIAA 237 (455)
T ss_pred cEEEEECCCCCCccHHHHHHhCCCC-------CC-----------EEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEE
Confidence 9999999999999999999987643 33 68889999998887777777777778999999999
Q ss_pred CCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCC
Q 015796 241 LANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE 320 (400)
Q Consensus 241 t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~ 320 (400)
++|+||.+|++++++|+|+||||| |+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+..
T Consensus 238 ~ad~~~~~r~~~~~~a~tiAEyfr-d~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~ 316 (455)
T PRK07960 238 PADVSPLLRMQGAAYATRIAEDFR-DRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGI 316 (455)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HcCCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCC
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 321 GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 321 ~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
.++||||+||+|++|+||++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++ ++|.+.|.+
T Consensus 317 ~~~GSIT~i~tVlv~~dD~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~~~~~-----~~~~~~~~~ 390 (455)
T PRK07960 317 SGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALID-----EQHYARVRQ 390 (455)
T ss_pred CCCeeeeeEEEEEEcCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCccccCC-----HHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998655 677776653
No 31
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=1.3e-95 Score=742.58 Aligned_cols=355 Identities=25% Similarity=0.411 Sum_probs=328.7
Q ss_pred cccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCee
Q 015796 14 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (400)
Q Consensus 14 ~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~ 93 (400)
+..+.+.+|+|++|.|+++++.+ ..+++||+|.|+. ++ ..|||++|+++.+++++|+++.|+++ |++|.+||+++
T Consensus 15 ~~~~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~-~~--~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~V~~tg~~~ 89 (433)
T PRK07594 15 PPDGYCRWGRIQDVSATLLNAWL-PGVFMGELCCIKP-GE--ELAEVVGINGSKALLSPFTSTIGLHC-GQQVMALRRRH 89 (433)
T ss_pred CCCccceeeEEEEEECCEEEEEE-CCcCCCCEEEEec-CC--eEEEEEEEcCCeEEEEEccCCcCCCC-CCEEEeCCCcc
Confidence 34567788999999999999995 4689999999953 33 58999999999999999999999996 99999999999
Q ss_pred eEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCCh
Q 015796 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (400)
Q Consensus 94 ~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GK 173 (400)
+||+|++|||||+|++|+|||+.++. ...++++++.+|||++|..++++|.||+++||.++|+++|||++|||++|+||
T Consensus 90 ~v~vg~~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GK 168 (433)
T PRK07594 90 QVPVGEALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGK 168 (433)
T ss_pred EEEeChhhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCc
Confidence 99999999999999999999998763 45677899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHH
Q 015796 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITP 253 (400)
Q Consensus 174 t~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~ 253 (400)
|+|+++|+++.. +| .+||++||||.+++.++.+.+.+.+.++|+++|++++|+|+.+|++++
T Consensus 169 STLL~~I~~~~~-------~d-----------~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 169 STLLAMLCNAPD-------AD-----------SNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred cHHHHHhcCCCC-------CC-----------EEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 999999876643 33 689999999977775555566667789999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEe
Q 015796 254 RIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILT 333 (400)
Q Consensus 254 ~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~ 333 (400)
|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||. +++||||+||+|+
T Consensus 231 ~~a~tiAEyfr-d~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~--~~~GSIT~~~tVl 307 (433)
T PRK07594 231 FVATTIAEFFR-DNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM--GEKGSITAFYTVL 307 (433)
T ss_pred HHHHHHHHHHH-HCCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcC--CCCcchheeeeee
Confidence 99999999999 89999999999999999999999999999999999999999999999999996 3699999999999
Q ss_pred ecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 334 MPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 334 ~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
+|+||++|||+|+++|||||||||||+||++||||||||+.|+||+|+.+ ++++|+++|+++
T Consensus 308 ~~gdD~~dpi~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~~~~-----~~~~h~~~a~~~ 369 (433)
T PRK07594 308 VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVV-----TSHEHRQLAAIL 369 (433)
T ss_pred ecCCCCCCchHHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccchhh-----CCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 568999999864
No 32
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=2.3e-95 Score=740.19 Aligned_cols=350 Identities=29% Similarity=0.487 Sum_probs=326.6
Q ss_pred eEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCcCC
Q 015796 22 RTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDM 101 (400)
Q Consensus 22 G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~~l 101 (400)
|+|++|.|+++++++. .+++||+|.|...++..+.+||++++++.+.+++|+++.|++. |++|.+||++++||+|++|
T Consensus 1 G~V~~i~G~~i~v~~~-~~~ige~~~i~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~-G~~V~~tg~~~~vpvg~~l 78 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP-KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGP-GSLVIATGRPLAIKVGKGL 78 (413)
T ss_pred CeEEEEECCEEEEEeC-CCCcCCEEEEEeCCCCeEEEEEEEEcCCeEEEEEccCccCCCC-CCEEEEcCCeeEEEcchhh
Confidence 7999999999999987 5899999999644445589999999999999999999999995 9999999999999999999
Q ss_pred cceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhHHHHH
Q 015796 102 LGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 102 LGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
||||+|++|+|||+.+++....++++++.||+|++|.+++++|.||+|+||.++|+++|||++|||++|+|||+|+++|+
T Consensus 79 LGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~ 158 (413)
T TIGR03497 79 LGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIA 158 (413)
T ss_pred cCCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 99999999999999888777778899999999999999999999999999999999999999999999999999999998
Q ss_pred HHhccchhhcccccccccCCCCCeEEEEEEeccch-HHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHH
Q 015796 182 RQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM-ETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTA 260 (400)
Q Consensus 182 ~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~-e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiA 260 (400)
++.. .+ ..|+++||||. |+.+|+++.+.+.+ ++||++|++|+|+||.+|++++|+|+|+|
T Consensus 159 ~~~~-------~~-----------~gvi~~~Ger~~ev~e~~~~~l~~~~-~~~~v~v~~tsd~~~~~r~~~~~~a~tiA 219 (413)
T TIGR03497 159 RNAK-------AD-----------INVIALIGERGREVRDFIEKDLGEEG-LKRSVVVVATSDQPALMRLKAAFTATAIA 219 (413)
T ss_pred CCCC-------CC-----------eEEEEEEccchHHHHHHHHHHhcccc-cceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 7653 33 67899999995 55566666677766 99999999999999999999999999999
Q ss_pred HHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCCCC
Q 015796 261 EYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDIT 340 (400)
Q Consensus 261 Eyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d~~ 340 (400)
|||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+ +.+||||+||+|++|+||++
T Consensus 220 Eyfr-~~G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~--~~~GSIT~~~tVl~~gdD~~ 296 (413)
T TIGR03497 220 EYFR-DQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN--SQKGSITGFYTVLVDGDDMN 296 (413)
T ss_pred HHHH-HCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcC--CCCcceeEEEEEEccCCCCC
Confidence 9999 89999999999999999999999999999999999999999999999999998 35899999999999999999
Q ss_pred CCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 341 HPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 341 dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|||+|+++|||||||+|||+||++||||||||+.|+||+++.+ +.++|+++|+++
T Consensus 297 dpi~~~~~si~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~-----~~~~~~~~a~~~ 351 (413)
T TIGR03497 297 EPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEI-----VSEEHKELAGKL 351 (413)
T ss_pred CcchhhccccccEEEEECHHHHhCCCCCccCCccccccCcccc-----CCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875 468999999863
No 33
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=5.9e-95 Score=737.14 Aligned_cols=356 Identities=22% Similarity=0.325 Sum_probs=329.5
Q ss_pred cccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCee
Q 015796 14 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (400)
Q Consensus 14 ~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~ 93 (400)
..++.+.+|+|++|.|++++++|+. +++||+|+|...++....|||++|+++.+++++|+++.|+++ |++|.++++++
T Consensus 13 ~~~~~~~~g~v~~v~g~~i~~~g~~-~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-G~~V~~~~~~~ 90 (434)
T PRK05922 13 QWQPYRECGLLSRVSGNLLEAQGLS-ACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVAL-GAEVLPLRRPP 90 (434)
T ss_pred cCCcceeeeEEEEEEccEEEEEeCC-CCCCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCC-CCEEEeCCCCc
Confidence 4577889999999999999999987 789999999643333478999999999999999999999996 99999999999
Q ss_pred eEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCCh
Q 015796 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (400)
Q Consensus 94 ~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GK 173 (400)
+||+|++|||||+|++|+|||+.+++....++|+++.||+|++|.+++++|+||||+||.|+|+++|||++|||++|+||
T Consensus 91 ~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GK 170 (434)
T PRK05922 91 SLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGK 170 (434)
T ss_pred EEEcChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCCh
Confidence 99999999999999999999998877766778999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHH
Q 015796 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITP 253 (400)
Q Consensus 174 t~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~ 253 (400)
|||+++|+++.. ++ +++|++||||.+++.++.+.+.+...+++|++|++|+|+||.+|++++
T Consensus 171 STLL~~Ia~~~~-------~d-----------~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 171 SSLLSTIAKGSK-------ST-----------INVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred HHHHHHHhccCC-------CC-----------ceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 999999987753 33 899999999965555555666666679999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEe
Q 015796 254 RIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILT 333 (400)
Q Consensus 254 ~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~ 333 (400)
++|+|+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|+
T Consensus 233 ~~a~tiAEyfr-d~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~--~~GSIT~~~tVl 309 (434)
T PRK05922 233 RAAMTIAEYFR-DQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNN--DKGSITALYAIL 309 (434)
T ss_pred HHHHHHHHHHH-HcCCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCC--CCcceeEEEEEE
Confidence 99999999999 999999999999999999999999999999999999999999999999999983 589999999999
Q ss_pred ecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 334 MPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 334 ~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
+++| ++|||+|+++|||||||||||+|++++ |||||++.|+||+|++++. ++|+++|..
T Consensus 310 ~~~~-~~dpi~d~~rsilDGhIvLsr~la~~~-~PAIDvl~S~SR~~~~~~~-----~~~~~~a~~ 368 (434)
T PRK05922 310 HYPN-HPDIFTDYLKSLLDGHFFLTPQGKALA-SPPIDILTSLSRSARQLAL-----PHHYAAAEE 368 (434)
T ss_pred ecCC-CCCccccchhhhcCcEEEEcHHHHhCC-CCCcCCccccccCCccccC-----HHHHHHHHH
Confidence 9998 899999999999999999999999987 9999999999999998664 789998864
No 34
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=5e-95 Score=738.45 Aligned_cols=369 Identities=22% Similarity=0.350 Sum_probs=343.1
Q ss_pred cCCchhhhcccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCC
Q 015796 4 AQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKF 83 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g 83 (400)
|-||..+|+...++.+.+|+|++|.|.++++.|+. +++||+|+|...+++.+.|||++|+++.+++|+|+++.|++. |
T Consensus 1 ~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~~~~-~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-g 78 (434)
T PRK07196 1 ALDHALKSIENIHLARVAGRLVRVTGLLLESVGCR-LAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLG-G 78 (434)
T ss_pred ChHHHHhhhccCCccceeeEEEEEEcCEEEEecCC-CCcCCEEEEEeCCCceEEEEEEEecCCEEEEEECCCccCCCC-C
Confidence 46899999999999999999999999999999986 899999999644554589999999999999999999999995 9
Q ss_pred CEEEEcCCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCcee
Q 015796 84 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 163 (400)
Q Consensus 84 ~~V~~tg~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~ 163 (400)
++|.+|+++++||+|++|||||+|++|+|||+.+++.....+++++.||||++|.++++||+||+++||.++|+++|||+
T Consensus 79 ~~v~~~~~~~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~i 158 (434)
T PRK07196 79 ARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRV 158 (434)
T ss_pred CEEEECCCccEEEcCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEE
Confidence 99999999999999999999999999999999887766667789999999999999999999999999999999999999
Q ss_pred eeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHH-HHhhhcCCCccEEEEEeCC
Q 015796 164 PLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFK-RDFEENGSMERVTLFLNLA 242 (400)
Q Consensus 164 ~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~-~~l~~~g~l~~t~vv~~t~ 242 (400)
+|||++|+|||||+.+|+++.. ++ ++|+++||++.+++.++. +.+.+.+ +.|++++++++
T Consensus 159 gI~G~sGaGKSTLl~~I~g~~~-------~d-----------v~vig~IGerg~ev~ef~~~~l~~~g-l~rsvvv~~~~ 219 (434)
T PRK07196 159 GLMAGSGVGKSVLLGMITRYTQ-------AD-----------VVVVGLIGERGREVKEFIEHSLQAAG-MAKSVVVAAPA 219 (434)
T ss_pred EEECCCCCCccHHHHHHhcccC-------CC-----------eEEEEEEeeecHHHHHHHHHHhhhcc-cceEEEEEecC
Confidence 9999999999999999987653 33 678899999966665554 5577666 99999999999
Q ss_pred CCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCC
Q 015796 243 NDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR 322 (400)
Q Consensus 243 ~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~ 322 (400)
++|+.+|+.++++++++||||| ++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.. .
T Consensus 220 d~s~~~rl~a~e~a~~iAEyfr-~~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~-~ 297 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYYR-DKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSS-G 297 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHhh-hccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCC-C
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999999999999874 3
Q ss_pred CCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 323 KGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 323 ~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
+||||+||+|++|+||++|||+|+++|||||||||||+||++||||||||+.|+||+|+.+++ ++|+++|+++
T Consensus 298 ~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~~~~-----~~~~~~a~~~ 370 (434)
T PRK07196 298 NGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIG-----SQQAKAASLL 370 (434)
T ss_pred CEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhccC-----HHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999998776 7899998764
No 35
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=7e-95 Score=736.25 Aligned_cols=356 Identities=25% Similarity=0.410 Sum_probs=329.9
Q ss_pred ccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCC-Cceee--EEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCee
Q 015796 17 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-GTMRR--GQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (400)
Q Consensus 17 ~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~-g~~~~--geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~ 93 (400)
..+.+|+|++|.|+++++++. .+++||+|+|+..+ +.... +||++|+++.+++++|++++|++. |++|..+++++
T Consensus 3 ~~~~~g~v~~i~g~~i~~~~~-~~~~ge~~~i~~~~~~~~~~~~~evv~~~~~~~~l~~~~~~~gi~~-g~~v~~~~~~~ 80 (428)
T PRK08149 3 LLQRLAHPLRIQGPIIEAELP-DVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSR-QVVLKPTGKPL 80 (428)
T ss_pred ceeeeeEEEEEEeeEEEEEEC-CCCcCCEEEEeecCCCCceeeEEEEEEeeCcEEEEEECCCccCCCC-CCEEEEcCCcC
Confidence 467889999999999999965 68999999996431 12244 899999999999999999999985 99999999999
Q ss_pred eEeCCcCCcceEEcCCCCccCCCC--CCC--CCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCC
Q 015796 94 KTPVSLDMLGRIFNGSGKPIDNGP--PIL--PEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (400)
Q Consensus 94 ~Vpvg~~lLGrV~D~lG~Pld~~~--~~~--~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~ 169 (400)
+||+|++|||||+|++|+|||+.+ ... ...++++++.||+|++|.+++++|.||+++||.++|+++|||++|||++
T Consensus 81 ~v~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~s 160 (428)
T PRK08149 81 SVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASA 160 (428)
T ss_pred EEEeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCC
Confidence 999999999999999999999886 322 2467899999999999999999999999999999999999999999999
Q ss_pred CCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHH
Q 015796 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (400)
Q Consensus 170 G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r 249 (400)
|+|||||+++|+++.. +| ++||++||+|.+++.++.+++.+.+.++|+++|++|+|+||.+|
T Consensus 161 G~GKTTLl~~i~~~~~-------~d-----------v~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r 222 (428)
T PRK08149 161 GCGKTSLMNMLIEHSE-------AD-----------VFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDR 222 (428)
T ss_pred CCChhHHHHHHhcCCC-------CC-----------eEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHH
Confidence 9999999999987754 33 67899999998888888888888888999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEE
Q 015796 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQI 329 (400)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i 329 (400)
++++|+|+|+||||| |+||||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+|
T Consensus 223 ~~a~~~a~tiAE~fr-~~G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~--~~GSIT~~ 299 (428)
T PRK08149 223 CNAALVATTVAEYFR-DQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGAT--LAGSITAF 299 (428)
T ss_pred HhHHHHHHHHHHHHH-HcCCCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCC--CCCCceEE
Confidence 999999999999999 899999999999999999999999999999999999999999999999999986 37999999
Q ss_pred eeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 330 PILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 330 ~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|+|++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+|+. .++++|+++|+++
T Consensus 300 ~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~-----~~~~~~~~~a~~~ 365 (428)
T PRK08149 300 YTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQ-----VTDPKHRQLAAAF 365 (428)
T ss_pred EEEEecCCCCCCCchhhhheeccEEEEEcHHHHhCCCCCcccCccccccchhh-----hcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999996 4568999999864
No 36
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=1.1e-93 Score=688.52 Aligned_cols=275 Identities=82% Similarity=1.280 Sum_probs=260.1
Q ss_pred eeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCC
Q 015796 92 VLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 171 (400)
Q Consensus 92 ~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~ 171 (400)
+++||||++|||||+|++|+|||+.+++....++++++++|+|++|.+++++|+||||+||+|+|||||||+||||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 47899999999999999999999988876777889999999999999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHh
Q 015796 172 PHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (400)
Q Consensus 172 GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~ 251 (400)
|||+|+.||++|+... ++++.++|||++||||.+++.+|++++.+.++|+||++|++|+|+||++|++
T Consensus 81 GKt~L~~~i~~~~~~~------------~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 81 PHNELAAQIARQAGVV------------GEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred ChhHHHHHHHHhhhcc------------ccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 9999999999986411 1123459999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhC-CCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEe
Q 015796 252 TPRIALTTAEYLAYEC-GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIP 330 (400)
Q Consensus 252 a~~~a~tiAEyfr~d~-G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~ 330 (400)
++|+|+|+||||| |+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||++.+++||||+||
T Consensus 149 a~~~a~aiAEyfr-d~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~~~GSITa~~ 227 (276)
T cd01135 149 TPRMALTTAEYLA-YEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIP 227 (276)
T ss_pred HHHHHHHHHHHHH-hccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCCCCeeEEEEE
Confidence 9999999999999 65 999999999999999999999999999999999999999999999999999754589999999
Q ss_pred eEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCcccc
Q 015796 331 ILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL 379 (400)
Q Consensus 331 ~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~ 379 (400)
+|++|+||++|||+++++|||||||||||+||++||||||||+.|+||+
T Consensus 228 ~V~~~~dD~~dpi~~~~~si~DG~ivLsr~la~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 228 ILTMPNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred EEEccCCCcCcchHHHHHhhcceEEEEcHHHHhCCCCCCcCCcccccCC
Confidence 9999999999999999999999999999999999999999999999996
No 37
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.8e-92 Score=720.22 Aligned_cols=362 Identities=26% Similarity=0.402 Sum_probs=330.6
Q ss_pred hhcccccccceeeEEEEEECCEEEEecCC-CCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEE
Q 015796 10 MEEGTLEVAMEYRTVTGVAGPLVILDKVK-GPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQF 88 (400)
Q Consensus 10 ~~~~~~~~~~~~G~V~~I~G~lv~v~gl~-~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~ 88 (400)
...+..++.+.+|+|++|.|.++++.|++ .+++||+|+|+..++ ...|||++|+++.+.+++|+++.||+. |++|..
T Consensus 16 ~~~~~~~~~~~~G~v~~v~g~~~~~~g~~~~~~iGe~~~i~~~~~-~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~v~~ 93 (450)
T PRK06002 16 RYAAPEPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGG-THLGEVVRVDPDGVTVKPFEPRIEIGL-GDAVFR 93 (450)
T ss_pred hcccccCccceeEEEEEEeceEEEEEcCccCCCCCCEEEEECCCC-cEEEEEEEEeCCeEEEEEccCCcCCCC-CCEEEe
Confidence 33447788899999999999999999985 699999999964344 378999999999999999999999996 899999
Q ss_pred cCCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCc-eecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeec
Q 015796 89 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA-YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFS 167 (400)
Q Consensus 89 tg~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~-~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g 167 (400)
++++++++|++|||||+|++|+|||+.+++.... ++++++.||++++|..+++++.||+++||.|+||++|||++|||
T Consensus 94 -~~~~~v~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G 172 (450)
T PRK06002 94 -KGPLRIRPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFA 172 (450)
T ss_pred -CCCceeecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEEC
Confidence 6799999999999999999999999988776654 57999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHH-HhhhcCCCccEEEEEeCCCCCH
Q 015796 168 AAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKR-DFEENGSMERVTLFLNLANDPT 246 (400)
Q Consensus 168 ~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~-~l~~~g~l~~t~vv~~t~~~~~ 246 (400)
++|+|||||+.+|++... .+ .++|+++|||.+++.++.+ .+.. .++|+++|++++|+||
T Consensus 173 ~SGsGKTTLL~~Ia~l~~-------pd-----------~gvv~liGergrev~e~~~~~l~~--~r~rtI~vV~qsd~~~ 232 (450)
T PRK06002 173 GSGVGKSTLLAMLARADA-------FD-----------TVVIALVGERGREVREFLEDTLAD--NLKKAVAVVATSDESP 232 (450)
T ss_pred CCCCCHHHHHHHHhCCCC-------CC-----------eeeeeecccCCccHHHHhHHHHHH--hhCCeEEEEEcCCCCH
Confidence 999999999999876542 23 6899999999766655544 4443 3889999999999999
Q ss_pred HHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCce
Q 015796 247 IERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSI 326 (400)
Q Consensus 247 ~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSi 326 (400)
.+|++++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||+++|+.|++|+||||+...++|||
T Consensus 233 ~~r~~~~~~a~~iAEyfr-d~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSI 311 (450)
T PRK06002 233 MMRRLAPLTATAIAEYFR-DRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSI 311 (450)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeee
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999864458999
Q ss_pred eEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 327 TQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 327 T~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|+||+|++|+||++|||+|+++||+||||||||+||++||||||||+.|+||+|+.++ .++|++.|+++
T Consensus 312 T~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~-----~~~~~~~a~~~ 380 (450)
T PRK06002 312 TGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAW-----TPEQRKLVSRL 380 (450)
T ss_pred eEEEEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccCccccccc-----CHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876 47899998764
No 38
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=2.5e-92 Score=721.08 Aligned_cols=356 Identities=29% Similarity=0.468 Sum_probs=331.5
Q ss_pred ccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 015796 17 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (400)
Q Consensus 17 ~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vp 96 (400)
+.+.+|+|++|.|+++++.+ +.+++||+|+|+..++..+.|||++++++.+.+++|++++|++. |++|.+||++++||
T Consensus 2 ~~~~~G~V~~v~g~~v~v~~-~~~~~ge~~~i~~~~~~~~~~eVi~~~~~~~~l~~~~~~~gl~~-G~~V~~tg~~~~v~ 79 (422)
T TIGR02546 2 PVRVRGRVTEVSGTLLKAVL-PGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISP-GSEVIPTGRPLSIR 79 (422)
T ss_pred CcceeEEEEEEECcEEEEEE-CCCCCCCEEEEeeCCCCeEEEEEEEEcCCcEEEEEccCccCCCC-CCEEEECCCCceEE
Confidence 45778999999999999985 56899999999744344589999999999999999999999995 99999999999999
Q ss_pred CCcCCcceEEcCCCCccCCCCCCCCCc--eecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChh
Q 015796 97 VSLDMLGRIFNGSGKPIDNGPPILPEA--YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHN 174 (400)
Q Consensus 97 vg~~lLGrV~D~lG~Pld~~~~~~~~~--~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt 174 (400)
+|++|||||+|++|+|||+.+++.... ++|+++.||||++|.+++++|.||+++||.++|+++|||++|+|++|+|||
T Consensus 80 vg~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKS 159 (422)
T TIGR02546 80 VGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKS 159 (422)
T ss_pred eChhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChH
Confidence 999999999999999999998776553 689999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHH
Q 015796 175 EIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPR 254 (400)
Q Consensus 175 ~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~ 254 (400)
+|+++|+++.. ++ .++|++||||.+++.++.+.....+.+++|++|++++++|+.+|++++|
T Consensus 160 tLl~~I~~~~~-------~~-----------~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~ 221 (422)
T TIGR02546 160 TLLGMIARGAS-------AD-----------VNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAY 221 (422)
T ss_pred HHHHHHhCCCC-------CC-----------EEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHH
Confidence 99999987653 33 7999999999877777777777777899999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEee
Q 015796 255 IALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTM 334 (400)
Q Consensus 255 ~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~ 334 (400)
+|+++||||| ++|+|||+++||+||||+|+||||+++||||+++|||+++|+.|++|+||||+ .++||||+||+|++
T Consensus 222 ~a~~~AE~f~-~~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~--~~~GSIT~~~tv~~ 298 (422)
T TIGR02546 222 TATAIAEYFR-DQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGN--GEKGSITALYTVLV 298 (422)
T ss_pred HHHHHHHHHH-HCCCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcC--CCCCceeEEEEEec
Confidence 9999999999 99999999999999999999999999999999999999999999999999998 35899999999999
Q ss_pred cCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 335 PNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 335 ~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|+||++|||+|+++||+||||+|||+||++||||||||+.|+||+++.+ ++++|+++|+++
T Consensus 299 ~~dd~~~pi~~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~~~~-----~~~~~~~~a~~~ 359 (422)
T TIGR02546 299 EGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMSQV-----VSTEHRRAAGKL 359 (422)
T ss_pred cCCCCCCCchhhhhccccEEEEEcHHHHhCCCCCccCCccccccchhhh-----CCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999864 668999999864
No 39
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=5.4e-92 Score=720.48 Aligned_cols=368 Identities=27% Similarity=0.412 Sum_probs=339.7
Q ss_pred CCchhhhcccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCC-CceeeEEEEEEeCCeEEEEEccCCCCCccCC
Q 015796 5 QNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-GTMRRGQVLEVDGEKAVVQVFEGTSGIDNKF 83 (400)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~-g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g 83 (400)
-|++|..+....+.+.+|+|++|.|+++++.+. .+++||+|+|+..+ +..+.|||++++++.+.+++|++++|++. |
T Consensus 8 ~~~~~~~~~~~~~~~~~G~v~~i~G~~v~~~~~-~~~~ge~~~i~~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~-G 85 (440)
T TIGR01026 8 FYNRLCQEMDLRLVKRVGRVTKVKGLLIEAVGP-QASVGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRP-G 85 (440)
T ss_pred HHHHHHhhhcCCccceeeEEEEEEeeEEEEEcC-CCCcCCEEEEeecCCCCcEEEEEEEecCCEEEEEEccCCcCCCC-C
Confidence 478889899999999999999999999999875 58999999996321 22378999999999999999999999995 9
Q ss_pred CEEEEcCCeeeEeCCcCCcceEEcCCCCccCCCC-CCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCce
Q 015796 84 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGP-PILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 162 (400)
Q Consensus 84 ~~V~~tg~~~~Vpvg~~lLGrV~D~lG~Pld~~~-~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr 162 (400)
++|.+||++++||+|++|||||+|++|+|||+.+ .+.....+++++.||+|++|.+++++|.||+++||.++||++|||
T Consensus 86 ~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~ 165 (440)
T TIGR01026 86 SKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQR 165 (440)
T ss_pred CEEEeCCCccEEEcChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcE
Confidence 9999999999999999999999999999999987 555556678999999999999999999999999999999999999
Q ss_pred eeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCC
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLA 242 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~ 242 (400)
++|||++|+|||+|+++|+++.. ++ +.+|++||+|.+++.++.+++...+.++||++|++++
T Consensus 166 ~~I~G~sG~GKStLl~~I~~~~~-------~~-----------~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~ 227 (440)
T TIGR01026 166 IGIFAGSGVGKSTLLGMIARNTE-------AD-----------VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS 227 (440)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC-------CC-----------EEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC
Confidence 99999999999999999987643 33 7799999999877777666665556699999999999
Q ss_pred CCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCC
Q 015796 243 NDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR 322 (400)
Q Consensus 243 ~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~ 322 (400)
|+||.+|+++|++|+|+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||. +.
T Consensus 228 d~~p~~r~~~~~~a~t~AE~fr-d~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~--~~ 304 (440)
T TIGR01026 228 DQSPLLRLKGAYVATAIAEYFR-DQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGA--SG 304 (440)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhcc--CC
Confidence 9999999999999999999999 89999999999999999999999999999999999999999999999999996 35
Q ss_pred CCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 323 KGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 323 ~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
+||||+||+|+++++|++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+++ ++|+++|+++
T Consensus 305 ~GSIT~i~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~~~~~~-----~~~~~~a~~~ 377 (440)
T TIGR01026 305 KGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVS-----EEHRRAARKF 377 (440)
T ss_pred CCeeeEEEEEEccCcCCCcchhhhhccccceEEEEecchhhCCccCccCCCcccccCccccCC-----HHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999998766 6899998864
No 40
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=5.6e-91 Score=669.91 Aligned_cols=270 Identities=31% Similarity=0.484 Sum_probs=258.5
Q ss_pred eeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCC
Q 015796 93 LKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (400)
Q Consensus 93 ~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~G 172 (400)
++||+|++|||||+|++|+|||+.+++....+|+++..+|++++|.+++++|+||||+||+|+||+||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 68999999999999999999999888777788899999999999999999999999999999999999999999999999
Q ss_pred hhhh-HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHh
Q 015796 173 HNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (400)
Q Consensus 173 Kt~L-~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~ 251 (400)
||+| +++|++|.. .+++|||++||||.+|+.+|++++.+.++++||++|++|+|+||.+|++
T Consensus 82 Kt~L~l~~i~~~~~-----------------~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 82 KTAIAIDTIINQKG-----------------KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred ccHHHHHHHHHhcC-----------------CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 9999 688887753 3458899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCC--CCCceeEE
Q 015796 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSITQI 329 (400)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~--~~GSiT~i 329 (400)
++|+|||+||||| ++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++. ++||||+|
T Consensus 145 a~~~a~aiAE~fr-~~G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~~~GSIT~i 223 (274)
T cd01132 145 APYTGCAMGEYFM-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTAL 223 (274)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCCCCcceEEE
Confidence 9999999999999 89999999999999999999999999999999999999999999999999999753 48999999
Q ss_pred eeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccC
Q 015796 330 PILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLM 380 (400)
Q Consensus 330 ~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~ 380 (400)
|+|++|+||++|||+|+++|||||||+|||+||++||||||||+.|+||++
T Consensus 224 ~~V~~~~dD~~~pi~~~~~~i~dg~ivLsr~la~~g~yPaId~l~S~SR~g 274 (274)
T cd01132 224 PIIETQAGDVSAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274 (274)
T ss_pred EEEEcCCCCcCcchHHHHHhhcCeEEEEcHHHHhCCCCCCcCCcccccCCC
Confidence 999999999999999999999999999999999999999999999999985
No 41
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=2.1e-90 Score=667.22 Aligned_cols=273 Identities=29% Similarity=0.464 Sum_probs=259.9
Q ss_pred eeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCC
Q 015796 92 VLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 171 (400)
Q Consensus 92 ~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~ 171 (400)
+++||||++|||||+|++|+|||+.+++...++|++++++|+|++|.+++++|+||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 47899999999999999999999998877778899999999999999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHh
Q 015796 172 PHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (400)
Q Consensus 172 GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~ 251 (400)
|||+|+++++++..+. ...+|||++||||.+|+.+|++++.+.++|+||++|++|+|+||.+|++
T Consensus 81 GKTtLa~~i~~~i~~~---------------~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 81 GKTVLIMELINNIAKA---------------HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred ChhHHHHHHHHHHHhc---------------CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 9999999998876421 1237999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhC-CCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEe
Q 015796 252 TPRIALTTAEYLAYEC-GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIP 330 (400)
Q Consensus 252 a~~~a~tiAEyfr~d~-G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~ 330 (400)
++|+|+|+||||| |+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+ .++||||+|+
T Consensus 146 ~~~~a~~~AEyfr-~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~--~~~GSiT~~~ 222 (274)
T cd01133 146 VALTGLTMAEYFR-DEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITS--TKKGSITSVQ 222 (274)
T ss_pred HHHHHHHHHHHHH-HhcCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcC--CCCcccceEE
Confidence 9999999999999 66 999999999999999999999999999999999999999999999999997 3589999999
Q ss_pred eEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCcc
Q 015796 331 ILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKS 382 (400)
Q Consensus 331 ~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~ 382 (400)
+|++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.
T Consensus 223 ~v~~~~dD~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~ 274 (274)
T cd01133 223 AVYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILDP 274 (274)
T ss_pred EEEecCCCCCCchHHHHHHhcceEEEEcHHHHhCCCCCCcCCccchhcccCc
Confidence 9999999999999999999999999999999999999999999999999963
No 42
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.3e-90 Score=686.27 Aligned_cols=346 Identities=29% Similarity=0.429 Sum_probs=329.8
Q ss_pred cceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeC
Q 015796 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (400)
Q Consensus 18 ~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpv 97 (400)
.+..|+|++|.+.++++.|+.++..||++++. ++ .+|.+++++.+.+.+.++++...|+ .|+.|.+||+-++|||
T Consensus 25 ~~~~g~V~sv~DgIa~v~Gl~~~~~~E~~ef~--~~--v~G~alnle~d~VG~vi~g~~~~i~-eG~~v~~Tg~i~~Vpv 99 (504)
T COG0056 25 VKEVGTVISVGDGIARVSGLENVMAGELVEFP--GG--VKGMALNLEEDSVGAVILGDYSDIK-EGDEVKRTGRILEVPV 99 (504)
T ss_pred hhccceEEEEecceEEEecCchhhcCceEEec--CC--cEEEEEeccccceeEEEecCCcccc-CCcEEEeeCceEEEec
Confidence 34679999999999999999999999999995 34 4899999999999999999999998 5999999999999999
Q ss_pred CcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhH
Q 015796 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 177 (400)
Q Consensus 98 g~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~ 177 (400)
|++|||||+|++|+|+|+.+++....+.+++..+|..++|+++++||+|||++||+|+|||||||.+|+|+.++|||.++
T Consensus 100 g~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIA 179 (504)
T COG0056 100 GEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIA 179 (504)
T ss_pred chhhcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHH
Q 015796 178 AQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIAL 257 (400)
Q Consensus 178 ~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~ 257 (400)
.|+++||+ +.+++|||++||++++.+..++++|++.|+|+||+||++++++|+.++|++||+||
T Consensus 180 ---------------idtIiNQk-~~~v~CIYVAIGQK~stva~vv~tL~e~gAmdyTiVV~AsASd~a~lqYLaPy~g~ 243 (504)
T COG0056 180 ---------------IDTIINQK-GSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGC 243 (504)
T ss_pred ---------------HHHHHhcc-cCCcEEEEEEcccchHHHHHHHHHHHHcCCccceEEEEecCCcchhhhhhhhhhhh
Confidence 34444443 58899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCC--CCceeEEeeEeec
Q 015796 258 TTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR--KGSITQIPILTMP 335 (400)
Q Consensus 258 tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~--~GSiT~i~~v~~~ 335 (400)
||||||| ++|+|||+++||||+||.|||||||++++|||||+|||++|+.|+||+|||++++++ +||||++|++.+.
T Consensus 244 a~aE~f~-~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETq 322 (504)
T COG0056 244 AMAEYFR-DNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQ 322 (504)
T ss_pred HHHHHHH-hcCCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccccCCCceEeeeeEEec
Confidence 9999999 899999999999999999999999999999999999999999999999999999763 7999999999999
Q ss_pred CCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccC
Q 015796 336 NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIG 385 (400)
Q Consensus 336 ~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~ 385 (400)
++|++.+||+|++|||||||||+.+||.+|+.||||+..|+||+++.++-
T Consensus 323 agDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~ 372 (504)
T COG0056 323 AGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQI 372 (504)
T ss_pred cCceeeecccceEEecCCcEEeehhhhhcCCCccccCCceeeccchHHHH
Confidence 99999999999999999999999999999999999999999999998764
No 43
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.6e-88 Score=685.89 Aligned_cols=355 Identities=25% Similarity=0.438 Sum_probs=329.1
Q ss_pred ccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCe
Q 015796 13 GTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEV 92 (400)
Q Consensus 13 ~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~ 92 (400)
.+..+.+.+|+|++|.|.++++.|+ .+++||+|.|. ++. ..|||++++++.+.+++|++++|++. |+.|.+|+++
T Consensus 14 ~~~~~~~~~g~v~~~~g~~~~~~g~-~~~ige~~~i~--~~~-~~~eV~~~~~~~~~~~~~~~~~gi~~-g~~v~~~~~~ 88 (432)
T PRK06793 14 IETPFYTKVGKVHSVQEQFFVAKGP-KAKIGDVCFVG--EHN-VLCEVIAIEKENNMLLPFEQTEKVCY-GDSVTLIAED 88 (432)
T ss_pred hcCCccceeeEEEEEEEEEEEEEcC-CCCcCCEEEEC--CCC-EEEEEEEecCCcEEEEEccCccCCCC-CCEEEECCCc
Confidence 3457889999999999999999986 58999999993 333 68999999999999999999999996 9999999999
Q ss_pred eeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCC
Q 015796 93 LKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (400)
Q Consensus 93 ~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~G 172 (400)
++||+|++|||||+|++|+|+|+.+.+....+++++++||+|++|..+++++.||+++||.++|+++|||++|||++|+|
T Consensus 89 ~~v~vg~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~G 168 (432)
T PRK06793 89 VVIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVG 168 (432)
T ss_pred cEEEcCHhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCC
Confidence 99999999999999999999999877666667799999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc-hHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHh
Q 015796 173 HNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (400)
Q Consensus 173 Kt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~ 251 (400)
||+|+.+|+++.. ++ ..++++|||| +|+.+|+++.+.+++ |+||++|++|+|+|+++|++
T Consensus 169 KTtLl~~Ia~~~~-------~~-----------~gvI~~iGerg~ev~e~~~~~l~~~g-l~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 169 KSTLLGMIAKNAK-------AD-----------INVISLVGERGREVKDFIRKELGEEG-MRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred hHHHHHHHhccCC-------CC-----------eEEEEeCCCCcccHHHHHHHHhhhcc-cceeEEEEECCCCCHHHHHH
Confidence 9999999987653 33 5688899999 555677777888887 99999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEee
Q 015796 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (400)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~ 331 (400)
++++|+++||||| |+|+|||+++||+||||+|+|||+++++|||+. |||+++|+.|++|+||||+. ++||||++|+
T Consensus 230 a~~~a~~iAEyfr-~~G~~VLlilDslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~--~~GSiT~~~t 305 (432)
T PRK06793 230 AAKLATSIAEYFR-DQGNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKT--QKGSITGIYT 305 (432)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEecchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccC--CCcceEEEEE
Confidence 9999999999999 999999999999999999999999999999996 99999999999999999986 4899999999
Q ss_pred EeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 332 v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|++|+||++|||+|+++|||||||||||+||++||||||||+.|+||+|+.++ .++|++.|+++
T Consensus 306 vlv~~dD~~dpI~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~-----~~~~~~~a~~~ 369 (432)
T PRK06793 306 VLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIV-----SPNHWQLANEM 369 (432)
T ss_pred EEecCCCCCCcchHHhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCccccC-----CHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999855 57899988753
No 44
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=3.3e-88 Score=665.09 Aligned_cols=372 Identities=70% Similarity=1.126 Sum_probs=361.8
Q ss_pred ccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 015796 17 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (400)
Q Consensus 17 ~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vp 96 (400)
..++|-+|++|+|+++.|++.+++.+||+++|+.++|+...|+|++++++.+++|+|+.++|+...+..|.++|+++.++
T Consensus 3 ~~~~Y~~i~~i~Gplv~ve~~eg~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~ 82 (463)
T COG1156 3 MVKEYTTISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIP 82 (463)
T ss_pred ccceeeeEEEeccceEEEecccCCCcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred CCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhh
Q 015796 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (400)
Q Consensus 97 vg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L 176 (400)
++++||||+||++|+|||+++.+.+.++.++++.|.||..|..+.++++|||++||+|+++.+|||++||+++|.+++.|
T Consensus 83 vs~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~L 162 (463)
T COG1156 83 VSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNEL 162 (463)
T ss_pred ecHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHH
Q 015796 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (400)
Q Consensus 177 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a 256 (400)
+.+|+||+.... ..+++.+||+++|-..+++.||.+++.++|+++|++++.|.+|+|+.+|...|.+|
T Consensus 163 aaqIarQA~v~~------------~~e~favVfaamGit~eea~fF~~~fe~tGal~r~vlflnlA~dp~vEri~tPr~a 230 (463)
T COG1156 163 AAQIARQATVDG------------EEEEFAVVFAAMGITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMA 230 (463)
T ss_pred HHHHHHhcccCC------------CccceeEEEeecCccHHHHHHHHHHHHhhhhhhhhHhhhhccCCCceeEecchhHH
Confidence 999999987321 23678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecC
Q 015796 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN 336 (400)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~ 336 (400)
+|.||||.+++++|||+++.|||.||+|+||||.+.+|.|+++|||+|||++|+.+|||||++.+++||||.+++.++|+
T Consensus 231 Lt~AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g~~GSiTqipIlTMP~ 310 (463)
T COG1156 231 LTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSITQIPILTMPG 310 (463)
T ss_pred HHHHHHHhccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceeccCCCceEEEEeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 337 DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 337 ~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
||++|||||++.+||+|||+|||+|..+|+||+||++.|+||+|+..+|++.||+||.+++|||
T Consensus 311 DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~g~TReDH~~~snql 374 (463)
T COG1156 311 DDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHGDVSNQL 374 (463)
T ss_pred CCcCCCCCcccceeccceEEEEhhcccCCcCCCccccccHHHHhhcccCCCccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 45
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.1e-87 Score=682.89 Aligned_cols=359 Identities=26% Similarity=0.433 Sum_probs=327.7
Q ss_pred cccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeC-CC-ceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEc
Q 015796 12 EGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLG-DG-TMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFT 89 (400)
Q Consensus 12 ~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~-~g-~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~t 89 (400)
....++.+.+|+|++|.|+++++++. .+++||+|+|... ++ ..+.+||++|+++++.+++|++++|+++ |++|.+|
T Consensus 10 ~~~~~~~~~~G~v~~i~G~~i~~~~~-~~~ige~~~i~~~~~~~~~~~~EVi~~~~~~~~l~~~~~~~gl~~-g~~V~~t 87 (438)
T PRK07721 10 IETLDPYKRYGKVSRVIGLMIESKGP-ESSIGDVCYIHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAP-GCLVEAT 87 (438)
T ss_pred HhcCCccceecEEEEEECcEEEEEEC-CCCchheEEEEecCCCCceEEEEEEEEcCCEEEEEEccCccCCCC-CCEEEEC
Confidence 34568889999999999999999976 4799999999643 22 1478999999999999999999999996 9999999
Q ss_pred CCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCC
Q 015796 90 GEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (400)
Q Consensus 90 g~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~ 169 (400)
|++++||+|++|||||+|++|+|||+.+......++++++.||+|++|.+++++|.||+++||.++|+++|||++|+|++
T Consensus 88 g~~~~v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~s 167 (438)
T PRK07721 88 GKPLEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGS 167 (438)
T ss_pred CCccEEEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCC
Confidence 99999999999999999999999998774444456799999999999999999999999999999999999999999999
Q ss_pred CCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHH-HHHHHHhhhcCCCccEEEEEeCCCCCHHH
Q 015796 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA-QFFKRDFEENGSMERVTLFLNLANDPTIE 248 (400)
Q Consensus 170 G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~-~~~~~~l~~~g~l~~t~vv~~t~~~~~~~ 248 (400)
|+|||+|+++|+++.. ++ ..+++++|||.+++ +++.+.+...+ ++|+++|++|+|+||.+
T Consensus 168 G~GKStLl~~I~~~~~-------~~-----------~gvI~~~Gerg~ev~e~~~~~l~~~~-l~r~v~vv~~~~~~~~~ 228 (438)
T PRK07721 168 GVGKSTLMGMIARNTS-------AD-----------LNVIALIGERGREVREFIERDLGPEG-LKRSIVVVATSDQPALM 228 (438)
T ss_pred CCCHHHHHHHHhcccC-------CC-----------eEEEEEEecCCccHHHHHHhhcChhh-hcCeEEEEECCCCCHHH
Confidence 9999999999876643 23 57889999996554 55555566655 99999999999999999
Q ss_pred HHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeE
Q 015796 249 RIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQ 328 (400)
Q Consensus 249 r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~ 328 (400)
|++++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||+++|+.+++|+||+++. .+||||+
T Consensus 229 r~~~~~~a~~iAEyfr-~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~--~~GsIT~ 305 (438)
T PRK07721 229 RIKGAYTATAIAEYFR-DQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTN--ASGSITA 305 (438)
T ss_pred HHHHHHHHHHHHHHHH-HCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCC--CCCCeee
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999863 4799999
Q ss_pred EeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 329 IPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 329 i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
|++|+++++|+++|++|++++++||||+||++|+++||||||||+.|+||+|+.+ +.++|+++|++
T Consensus 306 ~~TVlv~~hdm~e~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~~~-----~~~~~~~~a~~ 371 (438)
T PRK07721 306 FYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHI-----VSPEHKEAANR 371 (438)
T ss_pred EEEEEEECCCCCchhhhhEEEecCEEEEEeccHHHCCCCCccCCccccccccccc-----CCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999975 45799999875
No 46
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2e-86 Score=676.71 Aligned_cols=359 Identities=26% Similarity=0.429 Sum_probs=328.4
Q ss_pred ccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCe
Q 015796 13 GTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEV 92 (400)
Q Consensus 13 ~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~ 92 (400)
...++.+.+|+|++|.|+++++.+.. +++||+|+|+.+++....|||++|+++.+.+++|+++.|+++ |++|.++|++
T Consensus 16 ~~~~~~~~~G~v~~i~g~~~~~~~~~-~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~V~~~g~~ 93 (442)
T PRK06315 16 PDVQLTTVVGRITEVVGMLIKAVVPD-VRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSP-SSEVIPTGLP 93 (442)
T ss_pred hcCCcceeccEEEEEECCEEEEEECC-cccCCEEEEecCCCCEEEEEEEEEcCCeEEEEEccCCcCCCC-CCEEEeCCCc
Confidence 35678899999999999999999764 799999999643333589999999999999999999999996 9999999999
Q ss_pred eeEeCCcCCcceEEcCCCCccCC--CCCCC-CCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCC
Q 015796 93 LKTPVSLDMLGRIFNGSGKPIDN--GPPIL-PEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (400)
Q Consensus 93 ~~Vpvg~~lLGrV~D~lG~Pld~--~~~~~-~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~ 169 (400)
++||+|++|||||+|++|+|||+ .+++. ...++++++.||+|++|.++++||+||||+||.++|+++|||++|||++
T Consensus 94 ~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~s 173 (442)
T PRK06315 94 LHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGA 173 (442)
T ss_pred cEEEecccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCC
Confidence 99999999999999999999998 55554 4466799999999999999999999999999999999999999999999
Q ss_pred CCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHH-HHHHHHhhhcCCCccEEEEEeCCCCCHHH
Q 015796 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA-QFFKRDFEENGSMERVTLFLNLANDPTIE 248 (400)
Q Consensus 170 G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~-~~~~~~l~~~g~l~~t~vv~~t~~~~~~~ 248 (400)
|+|||+|+.+|+++... ++ ..|+++||||.+++ ++..+.+.+.+ ++++++|++|++++|.+
T Consensus 174 G~GKStLl~~I~~~~~~------~~-----------~~vi~liGerg~ev~~~~~~~l~~~g-~~~svvvvats~q~p~~ 235 (442)
T PRK06315 174 GVGKSSLLGMIARNAEE------AD-----------VNVIALIGERGREVREFIEGDLGEEG-MKRSVIVVSTSDQSSQL 235 (442)
T ss_pred CCCcchHHHHhhccccc------CC-----------ceEEEEECCCchHHHHHHHHHHHhcC-CceEEEEEeCCCCCHHH
Confidence 99999999999876421 22 46889999996555 56666677765 99999999999999999
Q ss_pred HHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeE
Q 015796 249 RIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQ 328 (400)
Q Consensus 249 r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~ 328 (400)
|+.++++|+++||||| ++|++||+++||+||||+|+|||++++|+||++++|||++||.|++|+||||+. .+||||+
T Consensus 236 rlnp~~va~~IAE~~r-~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~--~~GSITa 312 (442)
T PRK06315 236 RLNAAYVGTAIAEYFR-DQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGAS--DKGTITA 312 (442)
T ss_pred HhhHHHHHHHHHHHHH-HcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCC--CCcceee
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999984 4899999
Q ss_pred EeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 329 IPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 329 i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
||+|++++||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+++ ++|+++|++
T Consensus 313 i~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~~~~~-----~~~~~~a~~ 378 (442)
T PRK06315 313 FYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVP-----EEQRRIIGK 378 (442)
T ss_pred eEEEEecCCCCCcccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccchhcCC-----HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997555 689998875
No 47
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]
Probab=100.00 E-value=1e-85 Score=624.90 Aligned_cols=390 Identities=85% Similarity=1.267 Sum_probs=375.2
Q ss_pred hhhhcccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEE
Q 015796 8 VDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQ 87 (400)
Q Consensus 8 ~~~~~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~ 87 (400)
+-+.....++...|.+|.+|+|++|.....+.+++.|+|.+..+||+...|+|+++.++++++|+|+.++|+..+-+.+.
T Consensus 11 a~~~~~~~~prl~y~tv~gvngplvild~vkfp~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~t~~e 90 (489)
T KOG1351|consen 11 AVIENYTTEPRLTYRTVSGVNGPLVILDKVKFPKYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKKTTVE 90 (489)
T ss_pred HHHhccccCCceeEeeecccCCceEEEecccccchhhheEEecCCCCeecceEEEecCCeeEEEEeccccccccccceEE
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EcCCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeec
Q 015796 88 FTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFS 167 (400)
Q Consensus 88 ~tg~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g 167 (400)
+||+.+..||++++||||||+.|+|||+++++.++++..+++.|+||..|..+.|.++|||.+||.++.|.||||++||+
T Consensus 91 ftg~~lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifs 170 (489)
T KOG1351|consen 91 FTGEILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFS 170 (489)
T ss_pred EecccccccccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHH
Q 015796 168 AAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTI 247 (400)
Q Consensus 168 ~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~ 247 (400)
.+|.+++.++++|+||++..+.-. ....+.+++++.+||+++|-.-|.+.||.+++.++|.|++++++.|-+|+|..
T Consensus 171 aaglphneiaaqicrqaglvk~~~---k~~~d~~~dnfaivfaamgvnmetarffk~dfeengsm~~v~lflnlandpti 247 (489)
T KOG1351|consen 171 AAGLPHNEIAAQICRQAGLVKRPE---KDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTI 247 (489)
T ss_pred cCCCChhHHHHHHHHhcCccccCC---cccccccccceeeeehhhcccHHHHHHHHhhHHhcCCccceEEEEecCCCCch
Confidence 999999999999999999876422 22344566889999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCcee
Q 015796 248 ERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSIT 327 (400)
Q Consensus 248 ~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT 327 (400)
+|...|..|+|-|||++|+.+||||+++.|++.||+|+||+|.+..|.|+|+|||||||.+|+.+|||||++++++||||
T Consensus 248 eriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrvegr~gsit 327 (489)
T KOG1351|consen 248 ERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSIT 327 (489)
T ss_pred hhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhcccccCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 328 ~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
.+|++++|.||+++||||.+.+|++|||+.||+|+.+.+||+||+|.|+||+|+.++|+++||+||.++.|||
T Consensus 328 qipiltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr~dh~dvsnql 400 (489)
T KOG1351|consen 328 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQL 400 (489)
T ss_pred eeeeEecCCcccCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHHhcCCcccccchhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996
No 48
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.5e-82 Score=618.57 Aligned_cols=358 Identities=28% Similarity=0.428 Sum_probs=324.9
Q ss_pred eeeEEEEEECCEEEEecC---CCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEE-EEccCCCCCccCCCEEEEcCCeeeE
Q 015796 20 EYRTVTGVAGPLVILDKV---KGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVV-QVFEGTSGIDNKFTTVQFTGEVLKT 95 (400)
Q Consensus 20 ~~G~V~~I~G~lv~v~gl---~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l-~~~~~~~Gl~~~g~~V~~tg~~~~V 95 (400)
..|+|++|.|+++.++-. ..+.+++.+.+...+...+.-||-..-++..+. ..++.++||. +|..|..||++++|
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~-rg~~v~dtg~pi~V 80 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLV-RGLEVIDTGKPISV 80 (468)
T ss_pred CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcc-cCcEEecCCCceEE
Confidence 359999999999999753 368999999996532112344554444666666 4699999997 69999999999999
Q ss_pred eCCcCCcceEEcCCCCccCCCCCCCCC--ceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCCh
Q 015796 96 PVSLDMLGRIFNGSGKPIDNGPPILPE--AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (400)
Q Consensus 96 pvg~~lLGrV~D~lG~Pld~~~~~~~~--~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GK 173 (400)
|||++.||||+|.+|+|||+.+++... .+|+++.++|...+....+|.|+||||+||.|+|+.||.|+|+|||+|+||
T Consensus 81 PVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGK 160 (468)
T COG0055 81 PVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGK 160 (468)
T ss_pred ecchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccc
Confidence 999999999999999999999888766 899999999999899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHH
Q 015796 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITP 253 (400)
Q Consensus 174 t~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~ 253 (400)
|+|+++++++..+ . .+.++||+++|||.+|..+++++|+++|.+++|++|+++||+||+.|.+.+
T Consensus 161 TVl~~ELI~Nia~------~---------h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVa 225 (468)
T COG0055 161 TVLIQELINNIAK------E---------HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVA 225 (468)
T ss_pred eeeHHHHHHHHHH------H---------cCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeeh
Confidence 9999999877542 1 123899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEe
Q 015796 254 RIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILT 333 (400)
Q Consensus 254 ~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~ 333 (400)
++|+|+||||||++|+||||++|+++||.||.+|+|.+||++|+..||+|.|-+++..|+||... ++.||||++++|+
T Consensus 226 ltGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERIts--tk~GSITSiQavy 303 (468)
T COG0055 226 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITS--TKKGSITSVQAVY 303 (468)
T ss_pred hhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhc--CCCCceEEEEEEE
Confidence 99999999999878999999999999999999999999999999999999999999999999986 4689999999999
Q ss_pred ecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 334 MPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 334 ~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
+|+||++||.|..+++|||+.++|||++|+.|+|||||||.|.||.++..+ +-++|-++|.+
T Consensus 304 vPaDDlTDPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~i----vGe~Hy~va~~ 365 (468)
T COG0055 304 VPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKI----VGEEHYEVARE 365 (468)
T ss_pred eccccCCCcchhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCccc----ccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999754 33788888864
No 49
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=1.2e-82 Score=626.65 Aligned_cols=235 Identities=29% Similarity=0.466 Sum_probs=221.5
Q ss_pred ecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCC
Q 015796 125 LDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDN 204 (400)
Q Consensus 125 ~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~ 204 (400)
||++.++|++ +|..+++||.||||+||+|+||+||||++|||++|+|||+|+++|++|++ +|
T Consensus 123 ~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~-------~d---------- 184 (369)
T cd01134 123 WPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN-------SD---------- 184 (369)
T ss_pred eecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC-------CC----------
Confidence 4666666666 99999999999999999999999999999999999999999999999865 45
Q ss_pred eEEEEEEeccchHHHHHHHHHhh-------hcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcc
Q 015796 205 FAIVFAAMGVNMETAQFFKRDFE-------ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTD 277 (400)
Q Consensus 205 ~~~V~~~iGer~e~~~~~~~~l~-------~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Ds 277 (400)
+|||++||||.+|+.++.++|+ +.++|+||++|+||+|+|+++|++++|+|+|+||||| |+|+|||+++||
T Consensus 185 -vvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfr-d~G~dVll~~Ds 262 (369)
T cd01134 185 -IVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYNVALMADS 262 (369)
T ss_pred -EEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEcC
Confidence 8999999999877777778865 4678999999999999999999999999999999999 999999999999
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCC-----CCCCceeEEeeEeecCCCCCCCcccccccccC
Q 015796 278 MSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE-----GRKGSITQIPILTMPNDDITHPTPDLTGYITE 352 (400)
Q Consensus 278 ltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~-----~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~d 352 (400)
+||||+|+||||+++||||+++|||+|+|++|++||||||+++ +++||||++++|++|+||++|||++++++|+|
T Consensus 263 ~tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT~i~~V~~~g~D~sdPV~~~t~~i~d 342 (369)
T cd01134 263 TSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQ 342 (369)
T ss_pred hhHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEEEEEEEEccCCCcCcchHHhhHhhcc
Confidence 9999999999999999999999999999999999999999875 35799999999999999999999999999999
Q ss_pred eEEEecHhhhhcCCCCCcccCCCcccc
Q 015796 353 GQIYIDRQLQNRQIYPPINVLPSLSRL 379 (400)
Q Consensus 353 g~i~L~r~la~~g~~PaID~l~S~SR~ 379 (400)
|||+|||+||++||||||||+.|+||+
T Consensus 343 g~i~Lsr~La~~g~yPAId~l~S~Sry 369 (369)
T cd01134 343 VFWGLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred eEEEECHHHHhCCCCCCcCCcccccCC
Confidence 999999999999999999999999996
No 50
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=1.6e-81 Score=620.38 Aligned_cols=283 Identities=28% Similarity=0.504 Sum_probs=266.2
Q ss_pred eeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCC
Q 015796 92 VLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 171 (400)
Q Consensus 92 ~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~ 171 (400)
+++||+|++|||||+|++|+|||+.+++....++++++.||+|++|.+++++|.||+++||.++|+++|||++|||++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 47899999999999999999999988776677889999999999999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHh
Q 015796 172 PHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (400)
Q Consensus 172 GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~ 251 (400)
|||+|+.+|+++.. .+ ++||++||||.+++.++.+++.+.+.++||++|++|+|+||.+|++
T Consensus 81 GKTtLl~~Ia~~~~-------~~-----------~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 81 GKSTLLGMIARGTT-------AD-----------VNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred ChHHHHHHHhCCCC-------CC-----------EEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 99999999987643 23 7899999999888877777777777899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEee
Q 015796 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (400)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~ 331 (400)
++++|+|+||||| ++||||||++||+||||+|+|||++++||||+++|||+++|+.|++|+||||+. ++||||+|++
T Consensus 143 ~~~~a~~~AEyfr-~~g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~--~~GSIT~i~t 219 (326)
T cd01136 143 AAYTATAIAEYFR-DQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNS--DKGSITAFYT 219 (326)
T ss_pred HHHHHHHHHHHHH-HcCCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCC--CCCCeeeeee
Confidence 9999999999999 899999999999999999999999999999999999999999999999999986 4699999999
Q ss_pred EeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhcC
Q 015796 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQV 400 (400)
Q Consensus 332 v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~~ 400 (400)
|++|+||++|||++++++|+||||+|||+||++|+||||||+.|+||+++.++ .++|.++|+++
T Consensus 220 v~~~gdd~~dpi~~~~~~~~dg~ivL~r~la~~g~~PAid~~~S~SR~~~~~~-----~~~~~~~a~~~ 283 (326)
T cd01136 220 VLVEGDDLNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVV-----TPEHKEAARKL 283 (326)
T ss_pred eeecCCCCCcchHHhhhhccceEEEEcCcHHHcCCCCCcccccccccCccccC-----CHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998754 47899998764
No 51
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.3e-80 Score=683.65 Aligned_cols=196 Identities=29% Similarity=0.447 Sum_probs=180.9
Q ss_pred CCeEEEEEEeccchHHHHHHHHHhhh-------cCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEE
Q 015796 203 DNFAIVFAAMGVNMETAQFFKRDFEE-------NGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVIL 275 (400)
Q Consensus 203 ~~~~~V~~~iGer~e~~~~~~~~l~~-------~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~ 275 (400)
+..+|||++||||.+|+.++.+++++ .++|+||++|+||||+||++|++++|+|+||||||| |||+|||+|+
T Consensus 681 ~adi~V~~~iGERg~Ev~e~l~~~~~l~~~~~g~~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfr-d~G~~Vll~~ 759 (1017)
T PRK14698 681 DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMA 759 (1017)
T ss_pred CCCEEEEEeeccchHHHHHHHHHHHhhcccccCccccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEe
Confidence 44699999999997777667777744 578999999999999999999999999999999999 9999999999
Q ss_pred cchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCC-----CCCCceeEEeeEeecCCCCCCCcccccccc
Q 015796 276 TDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE-----GRKGSITQIPILTMPNDDITHPTPDLTGYI 350 (400)
Q Consensus 276 Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~-----~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i 350 (400)
||+||||+|+||||+++||||+++|||+|||+.|++||||||++. .++||||+|++|++|+||++|||++++++|
T Consensus 760 Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSIT~i~~V~~~g~D~s~Pv~~~~~~i 839 (1017)
T PRK14698 760 DSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRV 839 (1017)
T ss_pred ccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcceEEEEEEECCCCCCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999863 257999999999999999999999999999
Q ss_pred cCeEEEecHhhhhcCCCCCcccCCCccccCccc--cCCCCCchhHHHhhhc
Q 015796 351 TEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA--IGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 351 ~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~--~~~~~~~~~h~~~~~~ 399 (400)
+||||+|||+||++||||||||+.|+||+|+.+ +..+.+.++|.+.+++
T Consensus 840 ~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~ 890 (1017)
T PRK14698 840 VKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDK 890 (1017)
T ss_pred hCcEEecCHHHHhCCCCCCcCcccchhhhcccccchhccccCHHHHHHHHH
Confidence 999999999999999999999999999999976 3445577889888765
No 52
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=8.6e-73 Score=569.82 Aligned_cols=339 Identities=28% Similarity=0.447 Sum_probs=305.4
Q ss_pred eeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeCCcC
Q 015796 21 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLD 100 (400)
Q Consensus 21 ~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpvg~~ 100 (400)
.|+|++|+|++|.++|+.++.+.|+|+|. ...+.||||++++|++.+|+|++|+|+++ |.+|.+||++++|.+||+
T Consensus 2 ~G~i~~isGp~V~a~gm~~~~my~~v~Vg---~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~-Ge~V~~Tg~pLsvELGPG 77 (588)
T COG1155 2 MGKIIRISGPVVVAEGMEGAKMYDVVKVG---EMGLIGEIIRIEGNRATIQVYEDTAGIRP-GEKVENTGRPLSVELGPG 77 (588)
T ss_pred CceEEEEECCEEEEecCcCCceEEEEEEc---CCceeEEEEEEeCCeEEEEEEeecCCCCC-CCeeecCCCceEEEeCcc
Confidence 59999999999999999999999999994 34689999999999999999999999996 999999999999999999
Q ss_pred CcceEEcCCCCccCCCC--------------CCCCC--------------------------------------------
Q 015796 101 MLGRIFNGSGKPIDNGP--------------PILPE-------------------------------------------- 122 (400)
Q Consensus 101 lLGrV~D~lG~Pld~~~--------------~~~~~-------------------------------------------- 122 (400)
||+.|+||++|||+... .+.-.
T Consensus 78 ll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v 157 (588)
T COG1155 78 LLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKV 157 (588)
T ss_pred HHhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEE
Confidence 99999999999998411 00000
Q ss_pred ------------------------------ceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCC
Q 015796 123 ------------------------------AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (400)
Q Consensus 123 ------------------------------~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~G 172 (400)
++||+.. |.+..++.++++||.||.|+||+|+|+.||+...|+|+.|+|
T Consensus 158 ~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~-~rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsG 236 (588)
T COG1155 158 TWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRK-ARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSG 236 (588)
T ss_pred EEEecCCCceeeEEEEEEecCCCeEEEEEEEeccccC-CccccccCCCCCcccccceeehhhcccccCccccccCCCCCC
Confidence 0123322 334467788999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhh-------cCCCccEEEEEeCCCCC
Q 015796 173 HNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEE-------NGSMERVTLFLNLANDP 245 (400)
Q Consensus 173 Kt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~-------~g~l~~t~vv~~t~~~~ 245 (400)
||++.++++++++ +| ++||++||||..|.+++..+|++ ..+|+||++|+||+|||
T Consensus 237 KTV~qh~laK~sd-------ad-----------iVVyigCGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMP 298 (588)
T COG1155 237 KTVSQHTLSKLAD-------GD-----------IVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMP 298 (588)
T ss_pred cEehhhhhhhhcc-------CC-----------EEEEEecCCccchHHHHHHhCccccCCCCCCcccceeeEeecCccch
Confidence 9999999999987 66 99999999996555555566643 34799999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCC----
Q 015796 246 TIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG---- 321 (400)
Q Consensus 246 ~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~---- 321 (400)
.++|+++.|+|+|+||||| |||+||+++.||.+|||+|.||||..|+|+|+.+|||.||-+.+++||||||+...
T Consensus 299 VAAREasIYtGiTiaEY~R-DmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~ 377 (588)
T COG1155 299 VAAREASIYTGITIAEYYR-DMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPE 377 (588)
T ss_pred HHHhhhhhhhhhhHHHHHH-hhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCCC
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999998752
Q ss_pred -CCCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccc
Q 015796 322 -RKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA 383 (400)
Q Consensus 322 -~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~ 383 (400)
+.||+|.+++|+.|++|+++|+..+|..+.--.|-||++||.++|||||||+.|+|.+.+.+
T Consensus 378 ~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~ 440 (588)
T COG1155 378 ERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDL 440 (588)
T ss_pred cceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHH
Confidence 45999999999999999999999999999988888999999999999999999999998854
No 53
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.7e-72 Score=539.25 Aligned_cols=360 Identities=28% Similarity=0.413 Sum_probs=324.9
Q ss_pred cccceeeEEEEEECCEEEEecCC-CCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEE-EccCCCCCccCCCEEEEcCCee
Q 015796 16 EVAMEYRTVTGVAGPLVILDKVK-GPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQ-VFEGTSGIDNKFTTVQFTGEVL 93 (400)
Q Consensus 16 ~~~~~~G~V~~I~G~lv~v~gl~-~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~-~~~~~~Gl~~~g~~V~~tg~~~ 93 (400)
......|+|..|.|.++.+...+ .+.+-..++|...+. .+..||...-+++++.. .++.++|+. +|.+|..||.|+
T Consensus 47 ~a~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~-~lvlEV~qhlG~n~VR~iAMdgTEGLv-RG~~VlDtG~Pi 124 (521)
T KOG1350|consen 47 AAKKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDT-RLVLEVAQHLGENTVRTIAMDGTEGLV-RGQKVLDTGYPI 124 (521)
T ss_pred hhcccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCc-eeeeHHHHHhCcCeEEEEEecCchhhh-cCcccccCCCce
Confidence 34456799999999999985332 256777777764433 34555655567777775 599999996 799999999999
Q ss_pred eEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCCh
Q 015796 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (400)
Q Consensus 94 ~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GK 173 (400)
+||||++.||||+|.+|+|+|+++++....+.+++..+|...+.....+.|.||||++|.|.|..||+|+|+||++|+||
T Consensus 125 ~ipVG~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGK 204 (521)
T KOG1350|consen 125 SIPVGPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK 204 (521)
T ss_pred eeecCHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCC------ccEEEEEeCCCCCHH
Q 015796 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSM------ERVTLFLNLANDPTI 247 (400)
Q Consensus 174 t~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l------~~t~vv~~t~~~~~~ 247 (400)
|+|.++++++..+ +. +.+.||+++|||.++...++++|.+.|++ .+..+|+.+||+||+
T Consensus 205 TVlImELINNiAK------aH---------GGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQMNePPG 269 (521)
T KOG1350|consen 205 TVLIMELINNIAK------AH---------GGYSVFAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQMNEPPG 269 (521)
T ss_pred eeeHHHHHHHHHH------hc---------CCeEEeeccccccccccHHHHHHHhcCeeeccCCcceEEEEeeccCCCCC
Confidence 9999999877653 33 23899999999999999999999987753 677899999999999
Q ss_pred HHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCcee
Q 015796 248 ERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSIT 327 (400)
Q Consensus 248 ~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT 327 (400)
+|.+.+.+++|+|||||+..|+||||++|+++||.||..|+|.+||++|+..||+|.+..++..++||... +++||||
T Consensus 270 ARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITt--TkkGSiT 347 (521)
T KOG1350|consen 270 ARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--TKKGSIT 347 (521)
T ss_pred ceeeeeeecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhc--cccCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976 4689999
Q ss_pred EEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCcccc-CCCCCchhHHHhhhc
Q 015796 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAI-GEGMTRRDHSDVSNQ 399 (400)
Q Consensus 328 ~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~-~~~~~~~~h~~~~~~ 399 (400)
++++|++|+||++||.|..+++|+|..-||||.+++.|+|||+|||.|.||+|+..+ | ++|-++|++
T Consensus 348 SvQAvYVPADDLtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG-----~eHY~vA~~ 415 (521)
T KOG1350|consen 348 SVQAVYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVG-----EEHYNVARG 415 (521)
T ss_pred EEEEEEeehhccCCCCccceeeccchhhhhhhhhHhcCCccccCCccccccccCccccc-----hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999755 6 678888875
No 54
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=100.00 E-value=4.9e-73 Score=554.09 Aligned_cols=356 Identities=27% Similarity=0.437 Sum_probs=313.5
Q ss_pred cCCchhhhcccccccceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCC
Q 015796 4 AQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKF 83 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g 83 (400)
++......+..-+....||+|.+|+|++|.++++.++++.|+|+|.. ..+.||||.+++|.+.+|+|++|+|+++ |
T Consensus 4 ~~~~~~~~~~~e~~es~~G~v~~VSGPVV~a~~M~G~aMYELVrVGh---~~LvGEiIrlegD~aTIQVYEeTsG~tV-g 79 (618)
T KOG1352|consen 4 ARKSILRLSLDEEEESEYGRVYSVSGPVVVAENMAGCAMYELVRVGH---DELVGEIIRLEGDMATIQVYEETSGLTV-G 79 (618)
T ss_pred hhhhhhhccccchhhhccceEEeccCceEehhcccchHHHHHHHcch---HhhhhheeEecCceeEEEEEeccCCccc-C
Confidence 44445555666677889999999999999999999999999999952 3588999999999999999999999997 8
Q ss_pred CEEEEcCCeeeEeCCcCCcceEEcCCCCccCCCCCCCCC---------------c-------------------------
Q 015796 84 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPE---------------A------------------------- 123 (400)
Q Consensus 84 ~~V~~tg~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~---------------~------------------------- 123 (400)
++|.+||+|++|.+||+++|.|||+++|||........+ .
T Consensus 80 DpvlrTgkPLsvELGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ 159 (618)
T KOG1352|consen 80 DPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVF 159 (618)
T ss_pred CchhhcCCcceEeeCcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEee
Confidence 999999999999999999999999999999642110000 0
Q ss_pred --------------------------------------------------eecccCCCCCCCccCCcccccccceeeeee
Q 015796 124 --------------------------------------------------YLDISGSSINPSERTYPEEMIQTGISTIDV 153 (400)
Q Consensus 124 --------------------------------------------------~~~i~~~~~~~~~R~~~~~~l~TGiraID~ 153 (400)
.||+. .|.+..+..+.+.||.||.|++|+
T Consensus 160 ENsli~hki~lpPr~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR-~pRPv~ekl~an~PLltGQRvLDa 238 (618)
T KOG1352|consen 160 ENSLIKHKILLPPRARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVR-QPRPVTEKLPANHPLLTGQRVLDA 238 (618)
T ss_pred ccchhhceeecCCccCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccC-CCcchhhccCCCCcccccchHHHh
Confidence 02322 233456788889999999999999
Q ss_pred eeeeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhh-----
Q 015796 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEE----- 228 (400)
Q Consensus 154 l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~----- 228 (400)
|+||..|+...|+|..|||||++.+.+.+.+. .| ++||++||||..|..++.+++++
T Consensus 239 lfPcVqGGTtaIPGAFGCGKTVISQsLSKYSN-------SD-----------~iiYVGCGERGNEMsEVL~dFPeLt~ev 300 (618)
T KOG1352|consen 239 LFPCVQGGTTAIPGAFGCGKTVISQSLSKYSN-------SD-----------AIIYVGCGERGNEMSEVLMDFPELTMEV 300 (618)
T ss_pred hcchhcCCccccCcccccchHHHHHHHhhccC-------CC-----------eEEEEcccccchhHHHHHHhChhhEEec
Confidence 99999999999999999999999988877654 34 89999999995444444455543
Q ss_pred ----cCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCc
Q 015796 229 ----NGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGY 304 (400)
Q Consensus 229 ----~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~ 304 (400)
+.+|+||++|+||+|+|.++|.+++|||+|+||||| |||+||-.|.||.+|||+|+||||..|+|+|+..|||.+
T Consensus 301 ~G~~esiMKRT~LVANTSNMPVAAREASIYTGITlsEYfR-DmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAY 379 (618)
T KOG1352|consen 301 DGKTESIMKRTALVANTSNMPVAAREASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAY 379 (618)
T ss_pred CCcchhhhhhhhhhhcCCCCchhhhhhhhhhcccHHHHHH-hcCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHH
Confidence 458999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhccCCC-----CCCCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCcccc
Q 015796 305 MYTDLAQIYERAGRIE-----GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL 379 (400)
Q Consensus 305 ~~~~l~~l~ERag~~~-----~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~ 379 (400)
+-.+|++||||||++. .|.||+|++++|++|++||+||+..++.+|..-.|-||++||+|.|||.|||+.|+|++
T Consensus 380 LgArLAsFYERAG~vkcLGsP~ReGsVsIVgAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY 459 (618)
T KOG1352|consen 380 LGARLASFYERAGRVKCLGSPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKY 459 (618)
T ss_pred HHHHHHHHHHhcCceeecCCCCcCceeEEEEeecCCCCCcCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHH
Confidence 9999999999999975 47999999999999999999999999999998888899999999999999999999999
Q ss_pred Cccc
Q 015796 380 MKSA 383 (400)
Q Consensus 380 ~~~~ 383 (400)
|..+
T Consensus 460 ~~aL 463 (618)
T KOG1352|consen 460 MRAL 463 (618)
T ss_pred HHHH
Confidence 9864
No 55
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=1.3e-71 Score=522.06 Aligned_cols=213 Identities=40% Similarity=0.703 Sum_probs=201.2
Q ss_pred cceeeeeeeeeeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHH
Q 015796 146 TGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRD 225 (400)
Q Consensus 146 TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~ 225 (400)
||||+||+|+||+||||++|||++|+|||+|+.+|+++.. +| ++||++||||.+|+.+++++
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~-------~d-----------~~V~~~iGer~~Ev~~~~~~ 62 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD-------AD-----------VVVYALIGERGREVTEFIEE 62 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT-------TT-----------EEEEEEESECHHHHHHHHHH
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhccc-------cc-----------ceeeeeccccchhHHHHHHH
Confidence 8999999999999999999999999999999999998864 34 67999999999999999999
Q ss_pred hhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCch
Q 015796 226 FEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYM 305 (400)
Q Consensus 226 l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~ 305 (400)
+++.++++||++|++|+|+||.+|++++|+||++||||| |+|||||+++||+||||+|+|||++++||||+++|||+++
T Consensus 63 ~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfr-d~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~ 141 (215)
T PF00006_consen 63 LKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEYFR-DQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSL 141 (215)
T ss_dssp HHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHHHH-HTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTH
T ss_pred HhhcccccccccccccchhhHHHHhhhhccchhhhHHHh-hcCCceeehhhhhHHHHHHHHhhhcccccccccccccchh
Confidence 999999999999999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhccCC--CCCCCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCcc
Q 015796 306 YTDLAQIYERAGRI--EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLS 377 (400)
Q Consensus 306 ~~~l~~l~ERag~~--~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~S 377 (400)
|+.|++|+||||++ ..++||||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+|
T Consensus 142 ~~~l~~l~ERag~~~~~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 142 FSDLASLYERAGKVNSEEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp HHHHHHHHTTSEEBSTTTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred ccchhhHHHHhhccccccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 99999999999998 2359999999999999999999999999999999999999999999999999999998
No 56
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=3.9e-68 Score=529.89 Aligned_cols=288 Identities=16% Similarity=0.193 Sum_probs=260.7
Q ss_pred CCCCCccCCCEEEEcCCeeeEeCCcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCccccc-ccceeeeee
Q 015796 75 GTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMI-QTGISTIDV 153 (400)
Q Consensus 75 ~~~Gl~~~g~~V~~tg~~~~Vpvg~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l-~TGiraID~ 153 (400)
.-.||+. |+.|..++++ ++++.+||||+|++|+|+|+.. .........|++|++|.++.+++ .+|+|+||+
T Consensus 55 ~~~~l~~-Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~ 126 (380)
T PRK12608 55 RRFNLRT-GDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDL 126 (380)
T ss_pred HHhCCCC-CCEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhhh
Confidence 3468875 9999999988 9999999999999999999873 22334567888999999999888 899999999
Q ss_pred eeeeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCc
Q 015796 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSME 233 (400)
Q Consensus 154 l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~ 233 (400)
|+|||||||++|+|++|+|||||+.+|+++... ++ .++.|++++||||.+++.+|++.+..
T Consensus 127 l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~------------~~--~dv~~vv~lIgER~~EV~df~~~i~~----- 187 (380)
T PRK12608 127 VAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA------------NH--PEVHLMVLLIDERPEEVTDMRRSVKG----- 187 (380)
T ss_pred eeecCCCceEEEECCCCCCHHHHHHHHHHHHHh------------cC--CCceEEEEEecCCCCCHHHHHHHHhh-----
Confidence 999999999999999999999999999876531 11 34568999999998888888888753
Q ss_pred cEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHH
Q 015796 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIY 313 (400)
Q Consensus 234 ~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ 313 (400)
.++++++|+++..+.+++++++++||||+ ++|+||++++||+||||+||||+++..||+|+ +|||+++|+.+++|+
T Consensus 188 --~Vvast~de~~~~~~~v~~~~~~~Ae~f~-~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s-~G~~~s~~~~~~rl~ 263 (380)
T PRK12608 188 --EVYASTFDRPPDEHIRVAELVLERAKRLV-EQGKDVVILLDSLTRLARAYNNEVESSGRTLS-GGVDARALQRPKRLF 263 (380)
T ss_pred --hEEeecCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeCcHHHHHHHHhhhcccCCCCC-CCcChHHHhhhHHHH
Confidence 68899999999999999999999999999 89999999999999999999999999999999 899999999999999
Q ss_pred HhccCCCCCCCceeEEeeEeec-CCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchh
Q 015796 314 ERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRD 392 (400)
Q Consensus 314 ERag~~~~~~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~ 392 (400)
||||++. ++||||+|+||+++ +|||+|||++++++++||||+|||+||++|||||||+++|.||.++.++ .++
T Consensus 264 ~~A~~~~-~~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~sR~~~~l~-----~~~ 337 (380)
T PRK12608 264 GAARNIE-EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLL-----DSK 337 (380)
T ss_pred HhcCCCC-CCcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccccCcchhhcC-----CHH
Confidence 9999974 48999999999999 9999999999999999999999999999999999999999999999855 477
Q ss_pred HHHhhhc
Q 015796 393 HSDVSNQ 399 (400)
Q Consensus 393 h~~~~~~ 399 (400)
|.+.+.+
T Consensus 338 ~~~~~~~ 344 (380)
T PRK12608 338 ELEKVRR 344 (380)
T ss_pred HHHHHHH
Confidence 8877764
No 57
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=7.4e-61 Score=478.55 Aligned_cols=265 Identities=16% Similarity=0.214 Sum_probs=232.1
Q ss_pred cceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCccc--ccccceeeeeeeeeeccCceeeeecCCCCChhhhHHH
Q 015796 102 LGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEE--MIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ 179 (400)
Q Consensus 102 LGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~--~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~ 179 (400)
|-+|-...|.+.+....... +. ...|++|.+|..+.+ ++.||+|+||+|+|||||||.+|||++|+|||||+++
T Consensus 113 l~~v~~vng~~~~~~~~r~~--f~--~l~p~~p~~R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~ 188 (416)
T PRK09376 113 LLKVETVNGEDPEKARNRPL--FE--NLTPLYPNERLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQN 188 (416)
T ss_pred eEEEeeeCCCCHHHhcCCCC--cc--cCCCCChhhcccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHHHH
Confidence 33555555655544321111 11 346889999999987 7999999999999999999999999999999999999
Q ss_pred HHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHH
Q 015796 180 ICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259 (400)
Q Consensus 180 i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~ti 259 (400)
|+++... + ..+++|++++||||.|++.++.+.+. .+||++|+|+||..|+++++.++++
T Consensus 189 Ian~I~~------------n--hFDv~~~VvLIgER~~EVtdiqrsIl-------g~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 189 IANSITT------------N--HPEVHLIVLLIDERPEEVTDMQRSVK-------GEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred HHHHHHh------------h--cCCeEEEEEEeCCchhHHHHHHHHhc-------CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 9876541 0 13457899999999988888888875 2799999999999999999999999
Q ss_pred HHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeec-CCC
Q 015796 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP-NDD 338 (400)
Q Consensus 260 AEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~-~~d 338 (400)
||||+ ++|+||++++||+||||+||||++++.|++|+ +||+++.|+.+++|+|||+++. ++||||+|+|++++ +++
T Consensus 248 Ae~~~-e~G~dVlL~iDsItR~arAqrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e-~~GSlT~i~T~LvetGs~ 324 (416)
T PRK09376 248 AKRLV-EHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIE-EGGSLTIIATALIDTGSR 324 (416)
T ss_pred HHHHH-HcCCCEEEEEEChHHHHHHHHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCC-CCcceEEEEEEEecCCCC
Confidence 99999 99999999999999999999999999999999 9999999999999999999974 49999999999999 889
Q ss_pred CCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 339 ITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 339 ~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
|+|||++++++++||||+|||+||++||||||||+.|.||.++.+++ ++|.+.+.+
T Consensus 325 mdd~I~ee~kg~~n~~ivLdR~lA~~r~fPAIDi~~S~sR~~~~l~~-----~~~~~~~~~ 380 (416)
T PRK09376 325 MDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLS-----PEELQKVWI 380 (416)
T ss_pred CCccHHHHHhhhcCceEeECHHHHhcCCCCccCccccccccccccCC-----HHHHHHHHH
Confidence 99999999999999999999999999999999999999999998554 678877654
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.4e-60 Score=491.07 Aligned_cols=237 Identities=19% Similarity=0.253 Sum_probs=215.4
Q ss_pred CCCCCCCccCCcc-cccccceeeeeeeeeeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEE
Q 015796 129 GSSINPSERTYPE-EMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAI 207 (400)
Q Consensus 129 ~~~~~~~~R~~~~-~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~ 207 (400)
..|++|++|..+. +++.||+|+||+|+|||||||.+|||++|+|||+||++|+++..+ ++ .++.|
T Consensus 384 Ltp~~P~~R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~------------n~--~~~~~ 449 (672)
T PRK12678 384 LTPLYPNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT------------NN--PECHL 449 (672)
T ss_pred CCCCChHHhcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh------------cC--CCeEE
Confidence 3578999999987 999999999999999999999999999999999999999887532 11 34578
Q ss_pred EEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHH
Q 015796 208 VFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALRE 287 (400)
Q Consensus 208 V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~re 287 (400)
||++||||.|++.+|.+.++ .-||++|+|+||.+|++++|+||++||||+ ++|+||||++|||||||+||||
T Consensus 450 ivvLIgERpeEVtdm~rsVk-------geVVasT~D~p~~~~~~~a~~ai~~Ae~fr-e~G~dVlillDSlTR~ArAyre 521 (672)
T PRK12678 450 MVVLVDERPEEVTDMQRSVK-------GEVIASTFDRPPSDHTTVAELAIERAKRLV-ELGKDVVVLLDSITRLGRAYNL 521 (672)
T ss_pred EEEEEeCchhhHHHHHHhcc-------ceEEEECCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeCchHHHHHHHH
Confidence 89999999999987643332 129999999999999999999999999999 9999999999999999999999
Q ss_pred HHHhcCC-----CCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeec-CCCCCCCcccccccccCeEEEecHhh
Q 015796 288 VSAAREE-----VPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQL 361 (400)
Q Consensus 288 isl~lg~-----~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~i~L~r~l 361 (400)
+++..|+ +|+..+|||++|+.+++++| ++||||+|+||+++ +++|++||++++++++||||+|||+|
T Consensus 522 v~~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE-------~gGSLTii~TvLVETGS~mDd~Ifeefkgtgn~elvLsR~L 594 (672)
T PRK12678 522 AAPASGRILSGGVDSTALYPPKRFFGAARNIE-------NGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKL 594 (672)
T ss_pred hhcCCCCccCCCCchhhccCccHHHHHHHhhc-------cCccceeeEEEEeccCCccCcchHHHHhhccCceeeECHHH
Confidence 9999999 79999999999999999999 37999999999999 88999999999999999999999999
Q ss_pred hhcCCCCCcccCCCccccCccccCCCCCchhHHHhhhc
Q 015796 362 QNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 362 a~~g~~PaID~l~S~SR~~~~~~~~~~~~~~h~~~~~~ 399 (400)
|++||||||||+.|+||.++.++ .++|.+.+.+
T Consensus 595 AerrifPAIDv~~S~SR~ee~l~-----~~~e~~~~~~ 627 (672)
T PRK12678 595 ADKRIFPAVDVNASGTRKEELLL-----SPDELAIVHK 627 (672)
T ss_pred HhCCCCCccCCCcCccccchhhC-----CHHHHHHHHH
Confidence 99999999999999999999855 4678777654
No 59
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=4.7e-54 Score=431.43 Aligned_cols=229 Identities=16% Similarity=0.226 Sum_probs=208.2
Q ss_pred cccccceeeeeeeeeeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHH
Q 015796 142 EMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQF 221 (400)
Q Consensus 142 ~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~ 221 (400)
++-..|+|+||+++||++|||++|+|++|+|||||+.+|++.... + ..+.+|++++||||.+++.+
T Consensus 150 ~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~------------n--hfdv~v~VlLIgER~~EVtD 215 (415)
T TIGR00767 150 STEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR------------N--HPEVELIVLLIDERPEEVTD 215 (415)
T ss_pred CccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc------------c--CCceEEEEEEcCCCCccHHH
Confidence 445679999999999999999999999999999999998876431 1 13457899999999888877
Q ss_pred HHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCC
Q 015796 222 FKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGY 301 (400)
Q Consensus 222 ~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gy 301 (400)
|.+.+. ..||++|+++||..|..+++.++++||||+ ++|+||+|++|++||||+|||||++++||||+ +||
T Consensus 216 LqrsIl-------g~Vvast~d~p~~~~~~va~~v~e~Ae~~~-~~GkdVVLlIDEitR~arAqrei~~~~G~~~s-~G~ 286 (415)
T TIGR00767 216 MQRSVK-------GEVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKDVVILLDSITRLARAYNTVTPASGKVLS-GGV 286 (415)
T ss_pred HHHHhh-------ceEEEecCCCChHHHHHHHHHHHHHHHHHH-HcCCCeEEEEEChhHHHHHHHHhHhhcCCCCC-CCc
Confidence 877764 379999999999999999999999999999 89999999999999999999999999999998 999
Q ss_pred CCchhhhHHHHHHhccCCCCCCCceeEEeeEeec-CCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccC
Q 015796 302 PGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLM 380 (400)
Q Consensus 302 p~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~ 380 (400)
|+++|+.+++|+|||+++. ++||||+|+||+++ +|+|+|||++++++++||||+|||+||++|||||||+++|.||.+
T Consensus 287 ~~~~~~~~~~~~~~a~~~~-~~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~S~sR~~ 365 (415)
T TIGR00767 287 DANALHRPKRFFGAARNIE-EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKE 365 (415)
T ss_pred ChhhhcccHHHHhhcCCCC-CCcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCCCCCcCcccccccch
Confidence 9999999999999999974 49999999999999 889999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhHHHhhhc
Q 015796 381 KSAIGEGMTRRDHSDVSNQ 399 (400)
Q Consensus 381 ~~~~~~~~~~~~h~~~~~~ 399 (400)
+.+++ ++|.+.+.+
T Consensus 366 ~~l~~-----~~~~~~~~~ 379 (415)
T TIGR00767 366 ELLLT-----PEELQKIWV 379 (415)
T ss_pred hhcCC-----HHHHHHHHH
Confidence 98654 677777654
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=6.6e-50 Score=383.28 Aligned_cols=223 Identities=17% Similarity=0.251 Sum_probs=198.9
Q ss_pred ceeeeeeeeeeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHh
Q 015796 147 GISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDF 226 (400)
Q Consensus 147 GiraID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l 226 (400)
..|+||+|+||++|||++|||++|+|||||+++|+++... . ..+.+++++.+|+|+.++.++.+.+
T Consensus 3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~-------------~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 3 STRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK-------------N-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred chhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccc-------------c-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 3589999999999999999999999999999998766431 0 1234667788999977776676666
Q ss_pred hhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchh
Q 015796 227 EENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMY 306 (400)
Q Consensus 227 ~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~ 306 (400)
++++|++++++|+..|+++++.++++||||+ ++|++|++++|+++|||+|+||+++..|++| .+|||+++|
T Consensus 69 -------~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~ 139 (249)
T cd01128 69 -------KGEVIASTFDEPPERHVQVAEMVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANAL 139 (249)
T ss_pred -------ccEEEEecCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhh
Confidence 6789999999999999999999999999999 8999999999999999999999999999999 689999999
Q ss_pred hhHHHHHHhccCCCCCCCceeEEeeEeec-CCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccC
Q 015796 307 TDLAQIYERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIG 385 (400)
Q Consensus 307 ~~l~~l~ERag~~~~~~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~ 385 (400)
+.+++++|||+.+. ++||||+|+|++++ +++++||+.+++++++||||+|||+|++.|+||||||+.|.||.++.+++
T Consensus 140 ~~~~q~~~~Ar~~~-~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll~~ 218 (249)
T cd01128 140 HKPKRFFGAARNIE-EGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLD 218 (249)
T ss_pred hhhHHHHHHhcCCC-CCCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhhCC
Confidence 99999999999863 48999999999999 67888899999999999999999999999999999999999998877544
Q ss_pred CCCCchhHHHhhh
Q 015796 386 EGMTRRDHSDVSN 398 (400)
Q Consensus 386 ~~~~~~~h~~~~~ 398 (400)
+.|...+.
T Consensus 219 -----~~~~~~~~ 226 (249)
T cd01128 219 -----PEELQRMW 226 (249)
T ss_pred -----HHHHHHHH
Confidence 55665553
No 61
>KOG1353 consensus F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.2e-39 Score=300.70 Aligned_cols=254 Identities=26% Similarity=0.319 Sum_probs=225.7
Q ss_pred cceeeEEEEEECCEEEEecCCCCCCCcEEEEEeCCCceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcCCeeeEeC
Q 015796 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (400)
Q Consensus 18 ~~~~G~V~~I~G~lv~v~gl~~~~iGEl~~v~~~~g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg~~~~Vpv 97 (400)
..+.|+|.+|.+.+..+.|+.++.-+|+++|. .| ++|.-+.++.+++.+.+|++..-++ .|..|.+|+.-..||+
T Consensus 18 leEtgrVLsIGdGIArV~GL~nvQAeEmvEFs--sG--lKgmalnle~~~vg~v~~g~d~~ik-eg~~VkrTgaIvDVpv 92 (340)
T KOG1353|consen 18 LEETGRVLSIGDGIARVYGLTNVQAEEMVEFS--SG--LKGMALNLEGENVGVVVFGEDSLIK-EGDTVKRTAAISDVPP 92 (340)
T ss_pred hhhccceEEEcCceeeeecccccchHHHHhhh--cc--ccchhccccCCceEEEEEcCcceec-cCceEEeeeeeeccCc
Confidence 45679999999999999999999999999995 34 5788899999999999999999998 6999999999999999
Q ss_pred CcCCcceEEcCCCCccCCCCCCCCCceecccCCCCCCCccCCcccccccceeeeeeeeeeccCceeeeecCCCCChhhhH
Q 015796 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 177 (400)
Q Consensus 98 g~~lLGrV~D~lG~Pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGqr~~I~g~~G~GKt~L~ 177 (400)
++.|||||.|++|+|+|+++++.....+ +..|..+++|++||+|++|+++|||+|||.+|+|...+|||.|.
T Consensus 93 g~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTsla 164 (340)
T KOG1353|consen 93 LKALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSLA 164 (340)
T ss_pred hHHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCceeee
Confidence 9999999999999999999988766544 56799999999999999999999999999999999999999985
Q ss_pred HH-HHH-HhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCCCCHHHHHhHHHH
Q 015796 178 AQ-ICR-QAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRI 255 (400)
Q Consensus 178 ~~-i~~-~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~ 255 (400)
.. |.+ +... .- .+.+.+.+|||++||++++.+..+.+.|.+.++|+||++|++|++
T Consensus 165 ~dTI~nqk~~N---------~~-~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~~y~ivv~atas------------ 222 (340)
T KOG1353|consen 165 IDTILNQKRGN---------EC-LDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAMEYSIVVAATAS------------ 222 (340)
T ss_pred ehhhhhhhhhc---------cc-ccccceEEEEEEecccchhHHHHHHHHHHhcCCceEEEEEEeecc------------
Confidence 32 222 2111 10 123456899999999999999999999999999999999999988
Q ss_pred HHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeec
Q 015796 256 ALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP 335 (400)
Q Consensus 256 a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~ 335 (400)
.
T Consensus 223 -------------------------------------------------------------------------------q 223 (340)
T KOG1353|consen 223 -------------------------------------------------------------------------------Q 223 (340)
T ss_pred -------------------------------------------------------------------------------c
Confidence 7
Q ss_pred CCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCC
Q 015796 336 NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGE 386 (400)
Q Consensus 336 ~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~ 386 (400)
++|.+.+||++++|| ||||+|..+|+.+|+.||||+..|+||+++.++.|
T Consensus 224 ~gdvsayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgsaaq~k 273 (340)
T KOG1353|consen 224 AGDVSAYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTK 273 (340)
T ss_pred ccceeeecccceeee-cchhHHHHHHHHhccchhheeeeEeeeccchHHHH
Confidence 789999999999999 99999999999999999999999999999977653
No 62
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=1.4e-37 Score=300.74 Aligned_cols=215 Identities=17% Similarity=0.263 Sum_probs=195.3
Q ss_pred eeeeeeeeeeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhh
Q 015796 148 ISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFE 227 (400)
Q Consensus 148 iraID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~ 227 (400)
-|+||.+.|||||||.+|.+|+.+|||+|++.||+... .|| +.+..++++|+||+||++++.+..+
T Consensus 161 ~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt------------~N~--Pe~~LiVLLIDERPEEVTdmqrsV~ 226 (422)
T COG1158 161 TRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAIT------------TNH--PECELIVLLIDERPEEVTDMQRSVK 226 (422)
T ss_pred hHHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHh------------cCC--CceEEEEEEecCCchHHHHHHHhhc
Confidence 48999999999999999999999999999999975432 233 5568899999999999999987774
Q ss_pred hcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhh
Q 015796 228 ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYT 307 (400)
Q Consensus 228 ~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~ 307 (400)
.-||++|.|+||..+...+...+..|.++. ++||||++++||+||+|+||+-+.-..|+..+ .|--+..++
T Consensus 227 -------geViaSTFDepp~~HvqVAE~viEkAKRlV-E~~kDVVILLDSITRLaRAYN~v~P~SGkvLs-GGvD~nAL~ 297 (422)
T COG1158 227 -------GEVVASTFDEPPSRHVQVAEMVIEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALH 297 (422)
T ss_pred -------ceEEeecCCCcchhhHHHHHHHHHHHHHHH-HcCCcEEEEehhHHHHHHHhcccCCCCCCeec-CCcChhhhc
Confidence 459999999999999999999999999999 99999999999999999999998877777765 478888889
Q ss_pred hHHHHHHhccCCCCCCCceeEEeeEeec-CCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCccccCC
Q 015796 308 DLAQIYERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGE 386 (400)
Q Consensus 308 ~l~~l~ERag~~~~~~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~~~~~ 386 (400)
...+|+.-|.+++ +|||+|+++|.+++ ++.|++-|.++++++.++.++|||+||++++|||||+.+|.+|-.+.+..+
T Consensus 298 ~PKrFFGAARNIE-eGGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKEeLLl~~ 376 (422)
T COG1158 298 RPKRFFGAARNIE-EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSP 376 (422)
T ss_pred Cchhhhhhhhccc-cCcchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchHhhcCCH
Confidence 9999999999985 59999999999999 568999999999999999999999999999999999999999999886653
No 63
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.11 E-value=4.7e-09 Score=91.60 Aligned_cols=160 Identities=27% Similarity=0.442 Sum_probs=116.0
Q ss_pred eeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCC
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLA 242 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~ 242 (400)
++|+|++|+|||+++..++.+... .+..++|....+......+....+...+..++..++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~----------------~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT----------------KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATA 65 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh----------------cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCC
Confidence 579999999999999999877642 1126778877776443322222333334456666666666
Q ss_pred CCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCC
Q 015796 243 NDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR 322 (400)
Q Consensus 243 ~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~ 322 (400)
+........ .+++++. ...+..++++|+++.+++...+. ..+++..+...+.+|++++.+
T Consensus 66 ~~~~~~~~~------~~~~~~~-~~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~~---- 125 (165)
T cd01120 66 DDPAAARLL------SKAERLR-ERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERARK---- 125 (165)
T ss_pred CCCcHHHHH------HHHHHHH-hCCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHhc----
Confidence 555444332 5566666 66777789999999999876643 346778888899999998853
Q ss_pred CCceeEEeeEeecCCCCCCC----cccccccccCeEEEecH
Q 015796 323 KGSITQIPILTMPNDDITHP----TPDLTGYITEGQIYIDR 359 (400)
Q Consensus 323 ~GSiT~i~~v~~~~~d~~dp----i~~~~~~i~dg~i~L~r 359 (400)
..+|.+.+.....++..+| ....+....|+-|+|+|
T Consensus 126 -~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 126 -GGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred -CCceEEEEEecCCccccCcccccCccceeeecceEEEEeC
Confidence 5889999999998887777 88888999999999875
No 64
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.77 E-value=3e-08 Score=76.48 Aligned_cols=66 Identities=39% Similarity=0.569 Sum_probs=58.1
Q ss_pred EEEEECCEEEEecCCC--CCCCcEEEEEeCC-CceeeEEEEEEeCCeEEEEEccCCCCCccCCCEEEEcC
Q 015796 24 VTGVAGPLVILDKVKG--PKYYEIVNIRLGD-GTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTG 90 (400)
Q Consensus 24 V~~I~G~lv~v~gl~~--~~iGEl~~v~~~~-g~~~~geVi~~~~~~~~l~~~~~~~Gl~~~g~~V~~tg 90 (400)
|++|.|+++++++... +.+++.+.++..+ +...+|+|++|+++.+.+|+|++++||+. |++|.+||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~-G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGLDEDEVRLQVFGSTDGLSR-GTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEEETTEEEEEESSSGTTSBT-TCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeecccCccEEEEEEecCCCCCCC-CCEEEcCc
Confidence 6899999999976665 6888999998544 56789999999999999999999999995 99999986
No 65
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.91 E-value=0.0002 Score=69.04 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=106.4
Q ss_pred cccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHH
Q 015796 142 EMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA 219 (400)
Q Consensus 142 ~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~ 219 (400)
+.+.|||..+|-++- +-+|.-++|.|++|+|||++..+.+.+.. . .+..|+|+..-|..++.
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~--------~--------~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGA--------R--------EGEPVLYVSTEESPEEL 66 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHH--------h--------cCCcEEEEEecCCHHHH
Confidence 457899999999888 78999999999999999999887765543 1 22379999999987665
Q ss_pred HHHHHHh-------hhcCCCccEEEEEeCCCCCHH---H--HHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHH
Q 015796 220 QFFKRDF-------EENGSMERVTLFLNLANDPTI---E--RIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALRE 287 (400)
Q Consensus 220 ~~~~~~l-------~~~g~l~~t~vv~~t~~~~~~---~--r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~re 287 (400)
......+ .+.+ +-.++-..+...+.. . -.....+.-.+-+.+. +.+ ...+++||++.+......
T Consensus 67 ~~~~~~~g~d~~~~~~~g--~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~-~~~-~~~~ViDsi~~~~~~~~~ 142 (260)
T COG0467 67 LENARSFGWDLEVYIEKG--KLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVE-KEG-ADRVVIDSITELTLYLND 142 (260)
T ss_pred HHHHHHcCCCHHHHhhcC--CEEEEEccccccccccccccCCccHHHHHHHHHHHHH-HhC-CCEEEEeCCchHhhhcCc
Confidence 4333322 2222 111222222222211 0 1123345556777776 555 556677999965544321
Q ss_pred HHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCC
Q 015796 288 VSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQI 366 (400)
Q Consensus 288 isl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~ 366 (400)
= ......+..|.... .+.+ +|++.+...+....... ...-.+.||.|.|+....+.+.
T Consensus 143 ~--------------~~~r~~~~~l~~~~----~~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~ 200 (260)
T COG0467 143 P--------------ALVRRILLLLKRFL----KKLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGG 200 (260)
T ss_pred h--------------HHHHHHHHHHHHHH----HhCC-CEEEEEecccccCCCcc--ceEEEEEEEEEEEeeecccCce
Confidence 1 11122333333322 2244 77776655443222221 1223388999999887665433
No 66
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.80 E-value=0.00015 Score=68.25 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=93.4
Q ss_pred ccceeeeeeee--eeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHH-HH
Q 015796 145 QTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA-QF 221 (400)
Q Consensus 145 ~TGiraID~l~--pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~-~~ 221 (400)
.|||..+|-++ -+-+|.-++|.|++|+|||+|+.+++.+... . .+..|+|+..-|..+.. +.
T Consensus 2 ~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~------~---------~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 2 PTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLK------N---------FGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp --SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------H---------HT--EEEEESSS-HHHHHHH
T ss_pred CCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhh------h---------cCCcEEEEEecCCHHHHHHH
Confidence 69999999888 7889999999999999999998887644321 1 01268999998875443 33
Q ss_pred HHHHh-------hhcCCCccEEEEEeCCCCCHH-HHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcC
Q 015796 222 FKRDF-------EENGSMERVTLFLNLANDPTI-ERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAARE 293 (400)
Q Consensus 222 ~~~~l-------~~~g~l~~t~vv~~t~~~~~~-~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg 293 (400)
+ +.+ .+.| +-. +......... .....-...-.+.+.+. +.+. -.+++||++-+ .++.
T Consensus 67 ~-~s~g~d~~~~~~~g---~l~-~~d~~~~~~~~~~~~~~~l~~~i~~~i~-~~~~-~~vVIDsls~l-~~~~------- 131 (226)
T PF06745_consen 67 M-KSFGWDLEEYEDSG---KLK-IIDAFPERIGWSPNDLEELLSKIREAIE-ELKP-DRVVIDSLSAL-LLYD------- 131 (226)
T ss_dssp H-HTTTS-HHHHHHTT---SEE-EEESSGGGST-TSCCHHHHHHHHHHHHH-HHTS-SEEEEETHHHH-TTSS-------
T ss_pred H-HHcCCcHHHHhhcC---CEE-EEecccccccccccCHHHHHHHHHHHHH-hcCC-CEEEEECHHHH-hhcC-------
Confidence 3 222 1222 233 3332222110 01111122344555555 4344 46777999855 2111
Q ss_pred CCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCCCCCCccccccc-ccCeEEEecHh
Q 015796 294 EVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGY-ITEGQIYIDRQ 360 (400)
Q Consensus 294 ~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~-i~dg~i~L~r~ 360 (400)
-|..+...+-.|+....+ .| +|++.+...+.+...+. ...+.. +.|+-|.|...
T Consensus 132 -------~~~~~r~~l~~l~~~l~~----~~-~t~llt~~~~~~~~~~~-~~~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 132 -------DPEELRRFLRALIKFLKS----RG-VTTLLTSEMPSGSEDDG-TFGIEHYLADGVIELRYE 186 (226)
T ss_dssp -------SGGGHHHHHHHHHHHHHH----TT-EEEEEEEEESSSSSSSS-STSHHHHHSSEEEEEEEE
T ss_pred -------CHHHHHHHHHHHHHHHHH----CC-CEEEEEEccccCccccc-ccchhhhcccEEEEEEEE
Confidence 112233455666666632 23 56677776553211111 112233 78999998764
No 67
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.75 E-value=0.00011 Score=68.70 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=36.0
Q ss_pred cccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 144 l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.||+..+|-++. +.+|.=+.|+|++|+|||+++.+++.+.
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999885 7788889999999999999998887664
No 68
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.69 E-value=9.6e-05 Score=61.43 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=58.8
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEE
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLF 238 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv 238 (400)
+++.+.|+|++|+|||+++..++++... . ...++++-+....+....... ..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~------------~~ 52 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGP-------P---------GGGVIYIDGEDILEEVLDQLL------------LI 52 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCC-------C---------CCCEEEECCEEccccCHHHHH------------hh
Confidence 4788999999999999999999876542 1 002344444433222211111 11
Q ss_pred EeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHH
Q 015796 239 LNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSA 290 (400)
Q Consensus 239 ~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl 290 (400)
....+.....+........+.|++.. ..++++|++.++.........
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~viiiDei~~~~~~~~~~~~ 99 (148)
T smart00382 53 IVGGKKASGSGELRLRLALALARKLK-----PDVLILDEITSLLDAEQEALL 99 (148)
T ss_pred hhhccCCCCCHHHHHHHHHHHHHhcC-----CCEEEEECCcccCCHHHHHHH
Confidence 12222233445555567777777654 468888999988776665543
No 69
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.57 E-value=0.00097 Score=70.58 Aligned_cols=175 Identities=15% Similarity=0.120 Sum_probs=97.8
Q ss_pred cccccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchH
Q 015796 140 PEEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNME 217 (400)
Q Consensus 140 ~~~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e 217 (400)
..+.+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++.++.+ .+..++|+..-+..+
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~----------------~g~~~~yis~e~~~~ 314 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR----------------RGERCLLFAFEESRA 314 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh----------------CCCcEEEEEecCCHH
Confidence 46678999999999875 789999999999999999999888765421 122677777666644
Q ss_pred HHHHHHHHh-------hhcCCCccEEEEEe-CCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHH
Q 015796 218 TAQFFKRDF-------EENGSMERVTLFLN-LANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVS 289 (400)
Q Consensus 218 ~~~~~~~~l-------~~~g~l~~t~vv~~-t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reis 289 (400)
....-...+ .+.| +..++.. +......+. ...+.+... +.+-+ ++|+||++-+..+..
T Consensus 315 ~i~~~~~~~g~~~~~~~~~g---~l~i~~~~~~~~~~~~~------~~~i~~~i~-~~~~~-~vVIDslt~l~~~~~--- 380 (509)
T PRK09302 315 QLIRNARSWGIDLEKMEEKG---LLKIICARPESYGLEDH------LIIIKREIE-EFKPS-RVAIDPLSALARGGS--- 380 (509)
T ss_pred HHHHHHHHcCCChHHHhhcC---CceeecCCcccCCHHHH------HHHHHHHHH-HcCCC-EEEEcCHHHHHHhCC---
Confidence 332111222 1122 1122221 111122221 122334443 33334 788899997754321
Q ss_pred HhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCCCCCCcc-cccccccCeEEEecHhh
Q 015796 290 AAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTP-DLTGYITEGQIYIDRQL 361 (400)
Q Consensus 290 l~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~-~~~~~i~dg~i~L~r~l 361 (400)
+..+-..+..|...+.+ . .+|.+.+..++...-.++.. ..+.++.|+-|.|+..-
T Consensus 381 ------------~~~~~~~l~~l~~~~k~----~-~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~ 436 (509)
T PRK09302 381 ------------LNEFRQFVIRLTDYLKS----E-EITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVE 436 (509)
T ss_pred ------------HHHHHHHHHHHHHHHHh----C-CCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEee
Confidence 00112233444444432 2 35777776665432122222 24567889999988643
No 70
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.54 E-value=0.0021 Score=62.26 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=35.2
Q ss_pred cccceeeeeeee----------------eeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 144 IQTGISTIDVMN----------------SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 144 l~TGiraID~l~----------------pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.|||+.+|-++ =+-+|.-+.|.|++|+|||+++.+++.+.
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999886 35689999999999999999998887654
No 71
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.42 E-value=0.00052 Score=64.48 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=37.7
Q ss_pred ccccccceeeeeeee--eeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 141 EEMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 141 ~~~l~TGiraID~l~--pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
++.+.||+..+|-++ -+-+|.=+.|.|++|+|||+++.+++.+.
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999887 46678889999999999999998887654
No 72
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.42 E-value=0.00074 Score=63.94 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=47.3
Q ss_pred ccccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchH
Q 015796 141 EEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNME 217 (400)
Q Consensus 141 ~~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e 217 (400)
.+.+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++....+ .+..|+|+..-+..+
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~----------------~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK----------------QGKKVYVITTENTSK 66 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh----------------CCCEEEEEEcCCCHH
Confidence 4568999999998875 668999999999999999999888654321 122788888876643
No 73
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.41 E-value=0.00074 Score=63.53 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=70.1
Q ss_pred cccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc--hHHH
Q 015796 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--META 219 (400)
Q Consensus 144 l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~e~~ 219 (400)
+.||++.+|-++. +.+|..+.|.|++|+|||+|+.+++.+.... . +..+.+..++|+-..+. .+..
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~------~----~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLP------I----ELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCc------c----ccCCCCccEEEEeCCCCcCHHHH
Confidence 4799999998876 7799999999999999999999987553210 0 00011236777765553 2333
Q ss_pred HHHHHHhh--hcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHH
Q 015796 220 QFFKRDFE--ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (400)
Q Consensus 220 ~~~~~~l~--~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (400)
..+.+.+. ...++++-.++...+ . +...... ..+-+.+. +.++--++|+||++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~~~~--~--~~l~~~l--~~l~~~l~-~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 71 VQIAERFGLDPEEVLDNIYVARAYN--S--DHQLQLL--EELEAILI-ESSRIKLVIVDSVTALFR 129 (235)
T ss_pred HHHHHHhccChHhHhcCEEEEecCC--H--HHHHHHH--HHHHHHHh-hcCCeeEEEEeCcHHHHH
Confidence 33322221 123455544443221 1 1111111 12334444 443677899999997654
No 74
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.30 E-value=0.0011 Score=61.92 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=36.3
Q ss_pred cccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 144 l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.||+..+|-++. +-+|+-+.|.|++|+|||+|+.+++.+.
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 4799999998874 7899999999999999999999987664
No 75
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.30 E-value=0.0013 Score=66.36 Aligned_cols=127 Identities=14% Similarity=0.130 Sum_probs=75.4
Q ss_pred cccccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEecc--c
Q 015796 140 PEEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV--N 215 (400)
Q Consensus 140 ~~~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe--r 215 (400)
....+.||++.+|-++- +-.|.=.-|+|++|+|||+|+.+++-++.. ..+..+.+..++|+-.-+ +
T Consensus 104 ~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~ql----------p~~~gg~~~~vvyIdTE~tF~ 173 (344)
T PLN03187 104 SVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQL----------PTEMGGGNGKVAYIDTEGTFR 173 (344)
T ss_pred cCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhc----------chhhCCCCceEEEEEcCCCCC
Confidence 45568999999999876 557788899999999999999888755431 001111234789988877 4
Q ss_pred hHHHHHHHHHhhh--cCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHH
Q 015796 216 METAQFFKRDFEE--NGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (400)
Q Consensus 216 ~e~~~~~~~~l~~--~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (400)
.+....+-+.+.- ..++++ +.+ .... ....+.... ..+.+.+. + ++-=|+|+||++-+.++
T Consensus 174 peRl~~ia~~~g~d~~~~l~~-I~~-~~~~-~~e~~~~~l---~~l~~~i~-~-~~~~LvVIDSital~r~ 236 (344)
T PLN03187 174 PDRIVPIAERFGMDADAVLDN-IIY-ARAY-TYEHQYNLL---LGLAAKMA-E-EPFRLLIVDSVIALFRV 236 (344)
T ss_pred HHHHHHHHHHcCCChhhhcCe-EEE-ecCC-CHHHHHHHH---HHHHHHHH-h-cCCCEEEEeCcHHhhhc
Confidence 5555544444421 223555 222 2222 222222211 22334444 3 33447899999976543
No 76
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.25 E-value=0.0014 Score=64.89 Aligned_cols=126 Identities=14% Similarity=0.138 Sum_probs=73.7
Q ss_pred cccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc--hH
Q 015796 142 EMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--ME 217 (400)
Q Consensus 142 ~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~e 217 (400)
..+.||++.+|.++. +-+|.-+.|+|++|+|||+++.+++.++.... .....+..+||+-.-+. .+
T Consensus 75 ~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~----------~~g~~~~~~~yi~te~~f~~~ 144 (310)
T TIGR02236 75 GKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPE----------EKGGLGGKAVYIDTENTFRPE 144 (310)
T ss_pred CeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCc----------ccCCCcceEEEEECCCCCCHH
Confidence 347799999998876 66788899999999999999998876543100 00001227899998773 44
Q ss_pred HHHHHHHHhhh--cCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCC-eEEEEEcchhhHHHH
Q 015796 218 TAQFFKRDFEE--NGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGK-HVLVILTDMSSYADA 284 (400)
Q Consensus 218 ~~~~~~~~l~~--~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~-~Vlli~Dsltr~a~A 284 (400)
....+.+.+.- ...+++-.++.. .+.. .+. ...-.+.+++. +.++ -=++|+||++-+-+.
T Consensus 145 rl~~~~~~~gl~~~~~~~~i~i~~~-~~~~--~~~---~lld~l~~~i~-~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 145 RIMQMAEARGLDPDEVLKNIYVARA-YNSN--HQM---LLVEKAEDLIK-ELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred HHHHHHHHcCCCHHHHhhceEEEec-CCHH--HHH---HHHHHHHHHHH-hcCCCceEEEEecchHhhhH
Confidence 44333332211 112344333333 2211 111 12234667776 4442 338999999976443
No 77
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.24 E-value=0.00068 Score=67.79 Aligned_cols=110 Identities=19% Similarity=0.324 Sum_probs=70.0
Q ss_pred cccccceeeeeeeee---eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHH
Q 015796 142 EMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (400)
Q Consensus 142 ~~l~TGiraID~l~p---igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (400)
+.+.||+..+|.++. +-+|.=+.|+|++|+|||+|+.+++.++.+ .+..|+|+-.=+..+.
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~----------------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK----------------AGGTAAFIDAEHALDP 97 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----------------cCCcEEEEcccchhHH
Confidence 468999999999987 668888999999999999998887665431 1225677754433222
Q ss_pred HHHHHHHhhhcCC-CccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHH
Q 015796 219 AQFFKRDFEENGS-MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (400)
Q Consensus 219 ~~~~~~~l~~~g~-l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (400)
. ..+.+ |+ +++ +++ .+.+. .++ ++.+++.+. .++.--++|+||++.+..
T Consensus 98 -~-~a~~l---Gvd~~~-l~v-~~p~~--~eq------~l~~~~~li-~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 98 -V-YARKL---GVDIDN-LLV-SQPDT--GEQ------ALEIAETLV-RSGAVDIIVVDSVAALVP 147 (321)
T ss_pred -H-HHHHc---CCCHHH-eEE-ecCCC--HHH------HHHHHHHHh-hccCCcEEEEcchhhhcc
Confidence 1 12222 32 233 233 33322 333 345566665 556677889999997664
No 78
>PRK09354 recA recombinase A; Provisional
Probab=97.22 E-value=0.00073 Score=68.23 Aligned_cols=111 Identities=17% Similarity=0.316 Sum_probs=73.5
Q ss_pred ccccccceeeeeeeee---eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchH
Q 015796 141 EEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNME 217 (400)
Q Consensus 141 ~~~l~TGiraID~l~p---igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e 217 (400)
.+.+.||+..+|.++. +-+|.=+.|+|++|+|||+|+.+++.++.+ .+..|+|+-.=+..+
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~----------------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK----------------AGGTAAFIDAEHALD 101 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----------------cCCcEEEECCccchH
Confidence 4568999999999988 556777899999999999999887766531 122678887765533
Q ss_pred HHHHHHHHhhhcCC-CccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHH
Q 015796 218 TAQFFKRDFEENGS-MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (400)
Q Consensus 218 ~~~~~~~~l~~~g~-l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (400)
. + ..+.+ |+ +++ +++ .+.+. .++ ++.+++.+. .++.--++|+||++-+..
T Consensus 102 ~-~-~a~~l---Gvdld~-lli-~qp~~--~Eq------~l~i~~~li-~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 102 P-V-YAKKL---GVDIDN-LLV-SQPDT--GEQ------ALEIADTLV-RSGAVDLIVVDSVAALVP 152 (349)
T ss_pred H-H-HHHHc---CCCHHH-eEE-ecCCC--HHH------HHHHHHHHh-hcCCCCEEEEeChhhhcc
Confidence 2 1 12233 32 333 233 33321 333 355666666 567777999999997764
No 79
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.19 E-value=0.0048 Score=65.11 Aligned_cols=189 Identities=12% Similarity=0.073 Sum_probs=105.4
Q ss_pred Ccccccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccch
Q 015796 139 YPEEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM 216 (400)
Q Consensus 139 ~~~~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~ 216 (400)
...+.+.|||..+|-++- +.+|.-++|.|++|+|||+|+.+++.++.+ ++..|+|+.--|..
T Consensus 240 ~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~----------------~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 240 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA----------------NKERAILFAYEESR 303 (484)
T ss_pred ccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH----------------CCCeEEEEEeeCCH
Confidence 356679999999998764 779999999999999999999888765531 12268998877775
Q ss_pred HHH-HHHHHHhh-------hcCCCccEEEEE-eCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHH
Q 015796 217 ETA-QFFKRDFE-------ENGSMERVTLFL-NLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALRE 287 (400)
Q Consensus 217 e~~-~~~~~~l~-------~~g~l~~t~vv~-~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~re 287 (400)
+.. ... +.+. +.| +-.++. .+....+.+ ..-.+-+... +.+.+ ++++||++-+..+..+
T Consensus 304 ~~i~~~~-~~lg~~~~~~~~~g---~l~~~~~~p~~~~~~~------~~~~i~~~i~-~~~~~-~vvIDsi~~~~~~~~~ 371 (484)
T TIGR02655 304 AQLLRNA-YSWGIDFEEMEQQG---LLKIICAYPESAGLED------HLQIIKSEIA-DFKPA-RIAIDSLSALARGVSN 371 (484)
T ss_pred HHHHHHH-HHcCCChHHHhhCC---cEEEEEcccccCChHH------HHHHHHHHHH-HcCCC-EEEEcCHHHHHHhcCH
Confidence 443 222 2221 112 122222 122222222 1222223333 33444 5677999977554311
Q ss_pred HHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCCCCCceeEEeeEeecCCCCCCCcc-cccccccCeEEEecHhhhhcCC
Q 015796 288 VSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTP-DLTGYITEGQIYIDRQLQNRQI 366 (400)
Q Consensus 288 isl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~-~~~~~i~dg~i~L~r~la~~g~ 366 (400)
. .+-..+.+|.+-+. .-.||.+.+..++.---..+++ ..+-++.|+-|+|...-.....
T Consensus 372 ----------~-----~~r~~~~~l~~~lk-----~~~it~~~t~~~~~~~~~~~~~~~~~s~l~D~ii~l~~~e~~g~~ 431 (484)
T TIGR02655 372 ----------N-----AFRQFVIGVTGYAK-----QEEITGFFTNTSDQFMGSHSITDSHISTITDTILMLQYVEIRGEM 431 (484)
T ss_pred ----------H-----HHHHHHHHHHHHHh-----hCCCeEEEeecccccccCCccCCCCeeEeeeEEEEEEEEecCCEE
Confidence 0 11122334555443 2356777776665410112233 2456788999998665544444
Q ss_pred CCCcccCCC
Q 015796 367 YPPINVLPS 375 (400)
Q Consensus 367 ~PaID~l~S 375 (400)
.-+|-++++
T Consensus 432 ~r~i~V~K~ 440 (484)
T TIGR02655 432 SRAINVFKM 440 (484)
T ss_pred EEEEEEEEc
Confidence 444554444
No 80
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.12 E-value=0.0039 Score=65.30 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=38.4
Q ss_pred ccccccceeeeeeee--eeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 141 EEMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 141 ~~~l~TGiraID~l~--pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
.+.+.|||.-+|-++ -+.+|+-++|.|++|+|||+|+.+++.+.
T Consensus 73 ~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~ 118 (454)
T TIGR00416 73 VPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL 118 (454)
T ss_pred cCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346899999999887 48899999999999999999998887654
No 81
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.11 E-value=0.0036 Score=59.59 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=46.8
Q ss_pred ccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHH
Q 015796 143 MIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (400)
Q Consensus 143 ~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (400)
-+.|||..+|-++. +-+|.-++|.|++|+|||+|..+++.+..+ .+..|+|+...|..+.
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~----------------~ge~~lyvs~ee~~~~ 63 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------------MGEPGIYVALEEHPVQ 63 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH----------------cCCcEEEEEeeCCHHH
Confidence 36899999998764 669999999999999999998887654321 1237899998887544
No 82
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.09 E-value=0.00085 Score=67.18 Aligned_cols=111 Identities=17% Similarity=0.313 Sum_probs=71.7
Q ss_pred ccccccceeeeeeeee---eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchH
Q 015796 141 EEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNME 217 (400)
Q Consensus 141 ~~~l~TGiraID~l~p---igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e 217 (400)
.+.+.||+..+|.++. +-+|.=+.|+|++|+|||+|+.+++.++.+ .+..|+|+-.=+..+
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~----------------~g~~~vyId~E~~~~ 96 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK----------------LGGTVAFIDAEHALD 96 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----------------cCCCEEEECccccHH
Confidence 4569999999999988 557777899999999999999887766431 112577776544332
Q ss_pred HHHHHHHHhhhcCC-CccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHH
Q 015796 218 TAQFFKRDFEENGS-MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (400)
Q Consensus 218 ~~~~~~~~l~~~g~-l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (400)
. + ..+.+ |. +++ ++ +...+. .++ ++.+++.+. ..+.--++|+||++-+..
T Consensus 97 ~-~-~a~~l---Gvd~~~-l~-v~~p~~--~eq------~l~i~~~li-~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 97 P-V-YAKKL---GVDLDN-LL-ISQPDT--GEQ------ALEIADSLV-RSGAVDLIVVDSVAALVP 147 (325)
T ss_pred H-H-HHHHc---CCCHHH-he-ecCCCC--HHH------HHHHHHHHH-hccCCCEEEEcchHhhcc
Confidence 2 1 11222 32 233 23 333332 222 355667776 567777899999987664
No 83
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.09 E-value=0.0075 Score=56.68 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=44.7
Q ss_pred cccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHH
Q 015796 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (400)
Q Consensus 144 l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (400)
+.|||..+|-++. +-+|.-++|.|++|+|||+|+.+++.+... .+..++|+...+..+.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~----------------~g~~~~~is~e~~~~~ 62 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR----------------DGDPVIYVTTEESRES 62 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh----------------cCCeEEEEEccCCHHH
Confidence 5799999999875 669999999999999999999887654321 1125778777666543
No 84
>PRK04328 hypothetical protein; Provisional
Probab=97.08 E-value=0.0023 Score=61.62 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=47.9
Q ss_pred ccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHH
Q 015796 143 MIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA 219 (400)
Q Consensus 143 ~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~ 219 (400)
.+.|||..+|-++. +-+|.-++|.|++|+|||+|..+++.+..+ .+..|+|+...|..+..
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~----------------~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------------MGEPGVYVALEEHPVQV 66 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh----------------cCCcEEEEEeeCCHHHH
Confidence 47899999999875 558999999999999999998887655321 12268999999986543
No 85
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.92 E-value=0.0076 Score=63.57 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=48.2
Q ss_pred ccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHH
Q 015796 143 MIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA 219 (400)
Q Consensus 143 ~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~ 219 (400)
.+.|||..+|-++. +-+|.-++|.|++|+|||+|+.+++.+... . .+..|+|+..-|+.+..
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~------~---------~ge~~lyvs~eE~~~~l 65 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII------H---------FDEPGVFVTFEESPQDI 65 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH------h---------CCCCEEEEEEecCHHHH
Confidence 46899999999886 779999999999999999999887644321 0 01268999988876554
No 86
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.86 E-value=0.0037 Score=62.37 Aligned_cols=127 Identities=13% Similarity=0.154 Sum_probs=74.1
Q ss_pred cccccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc--
Q 015796 140 PEEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-- 215 (400)
Q Consensus 140 ~~~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-- 215 (400)
....+.||++.+|-++- +-+|.=..|+|++|+|||+|+.+++-++..- .+..+.+..++|+-.-+.
T Consensus 74 ~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~----------~~~gg~~~~vvYIdtE~~f~ 143 (313)
T TIGR02238 74 KVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLP----------REMGGGNGKVAYIDTEGTFR 143 (313)
T ss_pred cCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcc----------hhhcCCCCeEEEEEcCCCCC
Confidence 34568999999998865 6688889999999999999998877543210 000112237888887663
Q ss_pred hHHHHHHHHHhhh--cCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHH
Q 015796 216 METAQFFKRDFEE--NGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (400)
Q Consensus 216 ~e~~~~~~~~l~~--~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (400)
.+....+-+.+.- ..++++ +.++ .... ...... .-..+.+.+. + ++-=|+|+||++-+.++
T Consensus 144 ~eRi~~~a~~~g~d~~~~l~~-i~~~-~~~~-~e~~~~---~l~~l~~~i~-~-~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 144 PDRIRAIAERFGVDPDAVLDN-ILYA-RAYT-SEHQME---LLDYLAAKFS-E-EPFRLLIVDSIMALFRV 206 (313)
T ss_pred HHHHHHHHHHcCCChHHhcCc-EEEe-cCCC-HHHHHH---HHHHHHHHhh-c-cCCCEEEEEcchHhhhh
Confidence 4555444444321 123445 3332 2221 222221 1233445554 3 34447899999866543
No 87
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.81 E-value=0.032 Score=53.13 Aligned_cols=59 Identities=7% Similarity=0.129 Sum_probs=40.2
Q ss_pred cccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHH
Q 015796 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (400)
Q Consensus 144 l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (400)
+.+++..+|-++. +-+|..++|.|++|+|||+|+.+++.+.. . ++..++|+...+..+.
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~--------~--------~g~~~~yi~~e~~~~~ 66 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFL--------Q--------NGYSVSYVSTQLTTTE 66 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH--------h--------CCCcEEEEeCCCCHHH
Confidence 3456666665554 66799999999999999999765544321 0 1126788887776544
No 88
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.78 E-value=0.0058 Score=61.71 Aligned_cols=126 Identities=14% Similarity=0.150 Sum_probs=74.2
Q ss_pred ccccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc--h
Q 015796 141 EEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--M 216 (400)
Q Consensus 141 ~~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~ 216 (400)
...+.||++.+|-++. +-+|.=+.|+|++|+|||+|+.+++.++.. ...+.+.+..++|+-.-+. .
T Consensus 102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~----------~~~~gg~~g~vlyIdtE~~f~~ 171 (342)
T PLN03186 102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQL----------PLDQGGGEGKAMYIDTEGTFRP 171 (342)
T ss_pred cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhc----------chhhCCCCceEEEEECCCCccH
Confidence 3458999999998765 557778899999999999999888765421 0001112236888888773 5
Q ss_pred HHHHHHHHHhh--hcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHH
Q 015796 217 ETAQFFKRDFE--ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (400)
Q Consensus 217 e~~~~~~~~l~--~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (400)
+....+-+.+. ....+++- .++... ....+.... ..+++.+. .++--|+|+||++-+.+.
T Consensus 172 eRl~qia~~~~~~~~~~l~~i-~~~~~~--~~e~~~~ll---~~~~~~~~--~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 172 QRLIQIAERFGLNGADVLENV-AYARAY--NTDHQSELL---LEAASMMA--ETRFALMIVDSATALYRT 233 (342)
T ss_pred HHHHHHHHHcCCChhhhccce-EEEecC--CHHHHHHHH---HHHHHHhh--ccCCCEEEEeCcHHHHHH
Confidence 55555544432 12245553 332222 222222211 12333443 344458899999977543
No 89
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.77 E-value=0.017 Score=61.23 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=49.2
Q ss_pred cccccceeeeeeee--eeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHH
Q 015796 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA 219 (400)
Q Consensus 142 ~~l~TGiraID~l~--pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~ 219 (400)
+.+.|||..+|-++ -+-+|+-++|.|++|+|||+|+.+++.+... + .+..|+|+..-|..+..
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~------------~---~ge~~lyis~ee~~~~i 75 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIK------------R---FDEPGVFVTFEESPEDI 75 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------------h---cCCCEEEEEccCCHHHH
Confidence 46799999999886 3779999999999999999999887654421 0 02268999999886543
No 90
>PTZ00035 Rad51 protein; Provisional
Probab=96.70 E-value=0.006 Score=61.50 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=71.6
Q ss_pred Ccccccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc-
Q 015796 139 YPEEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN- 215 (400)
Q Consensus 139 ~~~~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer- 215 (400)
.....+.||++.+|-++- +-+|.-..|+|++|+|||+|+.+++..... ...+.+.+..++|+-.-+.
T Consensus 95 ~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ql----------p~~~gg~~g~vvyIdtE~~f 164 (337)
T PTZ00035 95 KNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQL----------PIEQGGGEGKVLYIDTEGTF 164 (337)
T ss_pred ccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhcc----------ccccCCCCceEEEEEccCCC
Confidence 345668999999998874 667888999999999999999888754321 0001112235677665442
Q ss_pred -hHHHHHHHHHhhh--cCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHH
Q 015796 216 -METAQFFKRDFEE--NGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (400)
Q Consensus 216 -~e~~~~~~~~l~~--~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (400)
.+...++.+.+.- ..++++- .+ ..... ........ ..+.+.+. +++--|+|+||++-+.+
T Consensus 165 ~~eri~~ia~~~g~~~~~~l~nI-~~-~~~~~-~e~~~~~l---~~~~~~l~--~~~~~lvVIDSital~r 227 (337)
T PTZ00035 165 RPERIVQIAERFGLDPEDVLDNI-AY-ARAYN-HEHQMQLL---SQAAAKMA--EERFALLIVDSATALFR 227 (337)
T ss_pred CHHHHHHHHHHhCCChHhHhhce-EE-EccCC-HHHHHHHH---HHHHHHhh--ccCccEEEEECcHHhhh
Confidence 3444444333311 1234452 22 22222 12222111 12334443 35556899999997654
No 91
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.62 E-value=0.0049 Score=68.18 Aligned_cols=110 Identities=19% Similarity=0.328 Sum_probs=70.1
Q ss_pred cccccceeeeeeeee---eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHH
Q 015796 142 EMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (400)
Q Consensus 142 ~~l~TGiraID~l~p---igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (400)
+.+.||+..+|.++. +-+|.=+.|+|++|+|||+|+.+++.++.. .+..|+|+-.-+..+.
T Consensus 39 ~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~----------------~G~~v~yId~E~t~~~ 102 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA----------------AGGVAAFIDAEHALDP 102 (790)
T ss_pred ceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----------------cCCcEEEECCccchhH
Confidence 468999999999987 668888999999999999999876654421 1126777776554331
Q ss_pred HHHHHHHhhhcCC-CccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHH
Q 015796 219 AQFFKRDFEENGS-MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (400)
Q Consensus 219 ~~~~~~~l~~~g~-l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (400)
+ ..+.+ |+ +++ +++ .+.+ +.++ ++.+++.+- ++++--|+|+||++-+..
T Consensus 103 -~-~A~~l---GvDl~~-llv-~~~~--~~E~------~l~~i~~lv-~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 103 -D-YAKKL---GVDTDS-LLV-SQPD--TGEQ------ALEIADMLI-RSGALDIVVIDSVAALVP 152 (790)
T ss_pred -H-HHHHc---CCChhH-eEE-ecCC--CHHH------HHHHHHHHh-hcCCCeEEEEcchhhhcc
Confidence 1 11222 43 233 233 3322 2233 344455554 457777899999987663
No 92
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.60 E-value=0.013 Score=54.11 Aligned_cols=103 Identities=13% Similarity=0.198 Sum_probs=56.6
Q ss_pred eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEecc-chHHHHHHHHHhhhcCCCccE
Q 015796 157 IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV-NMETAQFFKRDFEENGSMERV 235 (400)
Q Consensus 157 igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe-r~e~~~~~~~~l~~~g~l~~t 235 (400)
+-+|+=+.|.|++|+|||+++.+++.+... .+..++|+-.-+ ..+....+.+...+ ..+++
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~----------------~g~~v~yi~~e~~~~~rl~~~~~~~~~-~~~~~- 70 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAAR----------------QGKKVVYIDTEGLSPERFKQIAEDRPE-RALSN- 70 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh----------------CCCeEEEEECCCCCHHHHHHHHHhChH-HHhcC-
Confidence 347888999999999999999887765431 122678888764 43333333222211 12344
Q ss_pred EEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHH
Q 015796 236 TLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (400)
Q Consensus 236 ~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (400)
++++... ++.+... .--.+.+++. +.+.+ ++++||++.+.++
T Consensus 71 i~~~~~~--~~~~~~~---~~~~l~~~~~-~~~~~-lvVIDSis~l~~~ 112 (209)
T TIGR02237 71 FIVFEVF--DFDEQGV---AIQKTSKFID-RDSAS-LVVVDSFTALYRL 112 (209)
T ss_pred EEEEECC--CHHHHHH---HHHHHHHHHh-hcCcc-EEEEeCcHHHhHH
Confidence 3333332 2222211 1223444454 33333 6778999987654
No 93
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.56 E-value=0.012 Score=58.52 Aligned_cols=126 Identities=14% Similarity=0.164 Sum_probs=72.8
Q ss_pred cccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc--hH
Q 015796 142 EMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--ME 217 (400)
Q Consensus 142 ~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~e 217 (400)
..+.||+..+|-++. +-+|.-+.|+|++|+|||+++.+++.++.... .....+..++|+-.-+. .+
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~----------~~gg~~~~~~yi~te~~f~~~ 151 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPE----------EKGGLEGKAVYIDTEGTFRPE 151 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhcccc----------ccCCCCceEEEEeCCCCcCHH
Confidence 457899999988765 66888999999999999999999876542100 00011237899988774 44
Q ss_pred HHHHHHHHhhh--cCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHH
Q 015796 218 TAQFFKRDFEE--NGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (400)
Q Consensus 218 ~~~~~~~~l~~--~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (400)
...++.+.+.. ...+++-.++-. . +..++.. ..-.+.+.+. +..+-=++|+||++-+-++
T Consensus 152 rl~~~~~~~g~~~~~~l~~i~~~~~--~-~~~~~~~---~~~~l~~~i~-~~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 152 RIEQMAEALGLDPDEVLDNIHVARA--Y-NSDHQML---LAEKAEELIK-EGENIKLVIVDSLTAHFRA 213 (317)
T ss_pred HHHHHHHHcCCChHhhhccEEEEeC--C-CHHHHHH---HHHHHHHHHh-ccCceeEEEEECchHHhhh
Confidence 44444333321 123455333322 1 1222221 1123444443 3133338999999976544
No 94
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.51 E-value=0.031 Score=57.17 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=38.4
Q ss_pred ccccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 141 EEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 141 ~~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
.+.+.|||.-+|-++- +.+|.-++|.|++|+|||+|+.+++.+.
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999998874 8899999999999999999999887654
No 95
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.45 E-value=0.018 Score=55.77 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=75.4
Q ss_pred cccccccceeeeeeee--eeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc--
Q 015796 140 PEEMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-- 215 (400)
Q Consensus 140 ~~~~l~TGiraID~l~--pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-- 215 (400)
-+..+.||++.+|.++ -|-.|+=.=|+|++|+|||.|+.+++.++.. ..+..+.+..+||+-.--.
T Consensus 16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l----------~~~~~g~~~~vvyidTe~~f~ 85 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQL----------PEEIGGLGGKVVYIDTEGTFS 85 (256)
T ss_dssp TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTS----------GGCTTSSSSEEEEEESSSSS-
T ss_pred cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhc----------ccccccCCCceEEEeCCCCCC
Confidence 4566899999999886 3567777899999999999999888765431 1112223447888876553
Q ss_pred hHHHHHHHHHhh--hcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHH
Q 015796 216 METAQFFKRDFE--ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADAL 285 (400)
Q Consensus 216 ~e~~~~~~~~l~--~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~ 285 (400)
.+...++-+.+. .+.++++-.++-.. + ..+...... .+...+. + .+-=|+|+||++.+-+..
T Consensus 86 ~~Rl~~i~~~~~~~~~~~l~~I~v~~~~-~--~~~l~~~L~---~l~~~l~-~-~~ikLIVIDSIaalfr~e 149 (256)
T PF08423_consen 86 PERLQQIAERFGLDPEEILDNIFVIRVF-D--LEELLELLE---QLPKLLS-E-SKIKLIVIDSIAALFRSE 149 (256)
T ss_dssp HHHHHHHHHHTTS-HHHHHHTEEEEE-S-S--HHHHHHHHH---HHHHHHH-H-SCEEEEEEETSSHHHHHH
T ss_pred HHHHHHHhhccccccchhhhceeeeecC-C--HHHHHHHHH---HHHhhcc-c-cceEEEEecchHHHHHHH
Confidence 344444444322 22346665444322 2 222222221 2344454 3 456699999999887654
No 96
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.45 E-value=0.059 Score=51.86 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=36.4
Q ss_pred ccccccceeeeeee-eeeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 141 EEMIQTGISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 141 ~~~l~TGiraID~l-~pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
++-+.||+..+|-+ --+.+|.-+.|.|++|+|||+++.+++.+.
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34577999999976 447788889999999999999998887654
No 97
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.31 E-value=0.051 Score=56.89 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=37.4
Q ss_pred cccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 142 EMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 142 ~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.+.||+..+|-++. +.+|+=++|.|++|+|||+|+.+++.+.
T Consensus 60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~ 104 (446)
T PRK11823 60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL 104 (446)
T ss_pred CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999998764 7789999999999999999998887654
No 98
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.30 E-value=0.019 Score=57.36 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=69.3
Q ss_pred ccccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc--h
Q 015796 141 EEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--M 216 (400)
Q Consensus 141 ~~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~ 216 (400)
...+.||++.+|-++. +-+|.=+.|.|++|+|||+|+.+++.++... .+ +.+.+..++|+-.-+. .
T Consensus 75 ~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~-----~~-----~Gg~~~~vvyIdtE~~f~~ 144 (316)
T TIGR02239 75 VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLP-----ID-----QGGGEGKALYIDTEGTFRP 144 (316)
T ss_pred cceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhh-----hh-----cCCCCceEEEEECCCCCCH
Confidence 3458999999998765 5567888999999999999998887643210 00 1011225777765552 3
Q ss_pred HHHHHHHHHhhh--cCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHH
Q 015796 217 ETAQFFKRDFEE--NGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (400)
Q Consensus 217 e~~~~~~~~l~~--~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (400)
+...++.+.+.- ..++++-.+. ... .+....... -.+.+.+. + ++--|+|+||++-+.+
T Consensus 145 ~Rl~~ia~~~~~~~~~~l~~i~~~-~~~--~~~~~~~~l---~~~~~~~~-~-~~~~LvVIDSI~al~r 205 (316)
T TIGR02239 145 ERLLAIAERYGLNPEDVLDNVAYA-RAY--NTDHQLQLL---QQAAAMMS-E-SRFALLIVDSATALYR 205 (316)
T ss_pred HHHHHHHHHcCCChHHhhccEEEE-ecC--ChHHHHHHH---HHHHHhhc-c-CCccEEEEECcHHHhh
Confidence 434333333311 1234443222 221 122222111 12334443 3 4445889999997643
No 99
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.26 E-value=0.1 Score=48.88 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=40.5
Q ss_pred ceeeeeeee--eeccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHH
Q 015796 147 GISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (400)
Q Consensus 147 GiraID~l~--pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (400)
||+.+|-++ -+-+|.-+.|.|++|+|||+++.+++.+..+ .+..|+|+-.-++.+.
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~----------------~g~~~~y~s~e~~~~~ 58 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK----------------NGEKAMYISLEEREER 58 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----------------CCCeEEEEECCCCHHH
Confidence 566777655 3447889999999999999998887755421 1226888888777544
No 100
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.15 E-value=0.15 Score=45.85 Aligned_cols=41 Identities=12% Similarity=0.019 Sum_probs=29.3
Q ss_pred eeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHH
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA 219 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~ 219 (400)
+.|.|++|+|||+|+.+++....+ ++..|+|+..-|..+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------------~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------------RGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------------CCCcEEEEECCCCHHHH
Confidence 478999999999999888766431 11257788777765443
No 101
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.06 E-value=0.15 Score=42.51 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=22.5
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHh
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
.+.-+.|.|++|+|||+|+..++++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999988765
No 102
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.032 Score=57.09 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHH
Q 015796 256 ALTTAEYLAYECGKHVLVILTDMSSYADALREV 288 (400)
Q Consensus 256 a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rei 288 (400)
.+.-|+.++ ..|+.++|++|-+-||-.++.+.
T Consensus 92 i~e~a~~~~-~~gr~tiLflDEIHRfnK~QQD~ 123 (436)
T COG2256 92 IIEEARKNR-LLGRRTILFLDEIHRFNKAQQDA 123 (436)
T ss_pred HHHHHHHHH-hcCCceEEEEehhhhcChhhhhh
Confidence 445677777 67999999999999999999854
No 103
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.75 E-value=0.019 Score=52.17 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=52.1
Q ss_pred eeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccch--HHHHHHHHHhhhcCCCccEEEEE
Q 015796 162 KIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM--ETAQFFKRDFEENGSMERVTLFL 239 (400)
Q Consensus 162 r~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~--e~~~~~~~~l~~~g~l~~t~vv~ 239 (400)
+++|.|++|+|||+++..++...+. -++|++.++.. |..+.+.+...+.+ .....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-------------------~~~~iat~~~~~~e~~~ri~~h~~~R~---~~w~t- 59 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-------------------QVLYIATAQPFDDEMAARIAHHRQRRP---AHWQT- 59 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-------------------CcEeCcCCCCChHHHHHHHHHHHhcCC---CCCeE-
Confidence 6899999999999999888754320 36788888862 34455555454443 11111
Q ss_pred eCCCCCHHHHHhHHHHHHHHHHHhhh--hCCCeEEEEEcchhhHHHHHH
Q 015796 240 NLANDPTIERIITPRIALTTAEYLAY--ECGKHVLVILTDMSSYADALR 286 (400)
Q Consensus 240 ~t~~~~~~~r~~a~~~a~tiAEyfr~--d~G~~Vlli~Dsltr~a~A~r 286 (400)
-..|. .+++.+.. ++++ ++++|++|-|....-
T Consensus 60 --~E~~~-----------~l~~~i~~~~~~~~--~VlID~Lt~~~~n~l 93 (170)
T PRK05800 60 --VEEPL-----------DLAELLRADAAPGR--CVLVDCLTTWVTNLL 93 (170)
T ss_pred --ecccc-----------cHHHHHHhhcCCCC--EEEehhHHHHHHHHh
Confidence 11111 13333331 3333 688899999987553
No 104
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.71 E-value=0.025 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.3
Q ss_pred eeeecCCCCChhhhHHHHHHHhc
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+.++||+|+|||||+.-|++..+
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCccchhHHHHHHHhccC
Confidence 68899999999999999887754
No 105
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.69 E-value=0.03 Score=50.88 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=50.9
Q ss_pred eeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc-hHHH-HHHHHHhhhcCCCccEEEEEe
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-META-QFFKRDFEENGSMERVTLFLN 240 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~-~~~~~~l~~~g~l~~t~vv~~ 240 (400)
++|.|++|+|||++..+++...+ .-++|+...+. ..+. +.+.+.-...+ .+-++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~-------------------~~~~y~at~~~~d~em~~rI~~H~~~R~-~~w~t---- 57 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG-------------------GPVTYIATAEAFDDEMAERIARHRKRRP-AHWRT---- 57 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-------------------CCeEEEEccCcCCHHHHHHHHHHHHhCC-CCceE----
Confidence 57899999999999988764421 15788888886 3333 33322222221 11111
Q ss_pred CCCCCHHHHHhHHHHHHHHHHHhhhhC-CCeEEEEEcchhhHHHHHH
Q 015796 241 LANDPTIERIITPRIALTTAEYLAYEC-GKHVLVILTDMSSYADALR 286 (400)
Q Consensus 241 t~~~~~~~r~~a~~~a~tiAEyfr~d~-G~~Vlli~Dsltr~a~A~r 286 (400)
......+++.+. +. +.+ ++++|++|-|.....
T Consensus 58 ------------~E~~~~l~~~l~-~~~~~~-~VLIDclt~~~~n~l 90 (169)
T cd00544 58 ------------IETPRDLVSALK-ELDPGD-VVLIDCLTLWVTNLL 90 (169)
T ss_pred ------------eecHHHHHHHHH-hcCCCC-EEEEEcHhHHHHHhC
Confidence 122234455554 32 444 577899999988875
No 106
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.032 Score=51.16 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=54.9
Q ss_pred eeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeC
Q 015796 162 KIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNL 241 (400)
Q Consensus 162 r~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t 241 (400)
|+.|+|++|+||||+++.|++.-+..+. +. + ...-..+-++.+...+...-+.+ | -+|
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl-st-g-----------d~~r~~~~~~t~lg~~~k~~i~~-g-----~lv--- 59 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL-DT-G-----------DILRAAIAERTELGEEIKKYIDK-G-----ELV--- 59 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE-cH-h-----------HHhHhhhccCChHHHHHHHHHHc-C-----Ccc---
Confidence 7899999999999999999877443221 11 1 12222333343444443332222 1 122
Q ss_pred CCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCC
Q 015796 242 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREE 294 (400)
Q Consensus 242 ~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~ 294 (400)
| --.+-..+-+.+.....+. .+|+|..-|+....+-+-..+.+
T Consensus 60 ----~-----d~i~~~~v~~rl~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 60 ----P-----DEIVNGLVKERLDEADCKA-GFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred ----c-----hHHHHHHHHHHHHhhcccC-eEEEeCCCCcHHHHHHHHHHHHH
Confidence 0 1123344555665333445 78889987776666655554444
No 107
>PF13173 AAA_14: AAA domain
Probab=95.53 E-value=0.048 Score=46.64 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=19.9
Q ss_pred CceeeeecCCCCChhhhHHHHHHH
Q 015796 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 160 Gqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
++-+.|.|+.|+|||||+.+++++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 355789999999999999887644
No 108
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.012 Score=56.68 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=30.6
Q ss_pred eeee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 148 iraI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.+++ |.=+.+.+|+.+.|.|++|||||||+..|+-
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5666 4558999999999999999999999998864
No 109
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.49 E-value=0.012 Score=53.89 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=30.1
Q ss_pred cceeeee-eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 146 TGISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 146 TGiraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++-+.+| .-+.+-+|.+++|.||+|+|||||+++++.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh
Confidence 3444444 447788999999999999999999999864
No 110
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.46 E-value=0.019 Score=48.52 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=27.3
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
.++ |.-+.+..|+.++|.|++|+|||||+.++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 344 344678889999999999999999998875
No 111
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.43 E-value=0.049 Score=45.94 Aligned_cols=93 Identities=10% Similarity=0.132 Sum_probs=48.8
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccch---HHHHHHHHHhhhcCCCccEEE
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM---ETAQFFKRDFEENGSMERVTL 237 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~---e~~~~~~~~l~~~g~l~~t~v 237 (400)
+-+.|.|++|+|||+++..++++...... .. ...-++++-+.... .....+.+.+.... ..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~-- 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAE---IK--------NHPDVIYVNCPSSRTPRDFAQEILEALGLPL---KS-- 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHH---HC--------CCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS---SS--
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhh---cc--------CCCcEEEEEeCCCCCHHHHHHHHHHHhCccc---cc--
Confidence 34688999999999999998876431100 00 02245677766654 33344444443322 11
Q ss_pred EEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHH
Q 015796 238 FLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYA 282 (400)
Q Consensus 238 v~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a 282 (400)
+.......-.+.++++ . .+.+++++|+.-++.
T Consensus 69 -----------~~~~~~l~~~~~~~l~-~-~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 69 -----------RQTSDELRSLLIDALD-R-RRVVLLVIDEADHLF 100 (131)
T ss_dssp -----------TS-HHHHHHHHHHHHH-H-CTEEEEEEETTHHHH
T ss_pred -----------cCCHHHHHHHHHHHHH-h-cCCeEEEEeChHhcC
Confidence 1111111134455554 3 444899999987654
No 112
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.42 E-value=0.08 Score=44.32 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.6
Q ss_pred eeeecCCCCChhhhHHHHHHHhc
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
++|.|++|+|||+++..++++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57899999999999999998865
No 113
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.014 Score=55.89 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=28.7
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
+++ |.=+.|.+|.+.||+|++|+|||||+..|+-
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 445 3448999999999999999999999888764
No 114
>PF05729 NACHT: NACHT domain
Probab=95.23 E-value=0.086 Score=45.84 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=19.5
Q ss_pred eeeecCCCCChhhhHHHHHHHhc
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+.|.|++|+|||+++..++.+-.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHH
Confidence 67899999999999999876543
No 115
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.019 Score=53.92 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478999999999999999999999998643
No 116
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.14 E-value=0.021 Score=52.33 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=29.3
Q ss_pred eeeeeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
++++-.+.+.+|.+++|.|++|+|||||+..|+..
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 44544578999999999999999999999998643
No 117
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.13 E-value=0.02 Score=52.20 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=26.9
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999999999998864
No 118
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.07 E-value=0.023 Score=53.32 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34478899999999999999999999998754
No 119
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.023 Score=52.65 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||++.|+..
T Consensus 18 ~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34578899999999999999999999998743
No 120
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.00 E-value=0.036 Score=53.39 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=52.2
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccch---HHHHHHHHHhhhcCCCccE
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM---ETAQFFKRDFEENGSMERV 235 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~---e~~~~~~~~l~~~g~l~~t 235 (400)
..+.++|.|.+|+|||+|+.++++...... ..+ .++++-.+... +..+.+.+.|.... ...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~---~f~-----------~v~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~ 81 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKN---RFD-----------GVIWVSLSKNPSLEQLLEQILRQLGEPD--SSI 81 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCC---CCT-----------EEEEEEEES-SCCHHHHHHHHHHHTCC---STS
T ss_pred CeEEEEEEcCCcCCcceeeeeccccccccc---ccc-----------cccccccccccccccccccccccccccc--ccc
Confidence 345589999999999999988875522100 011 56677766653 33455555554331 000
Q ss_pred EEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHH
Q 015796 236 TLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYA 282 (400)
Q Consensus 236 ~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a 282 (400)
....... ...-.+.++++ +++.|+|+||+....
T Consensus 82 -----~~~~~~~------~~~~~l~~~L~---~~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 82 -----SDPKDIE------ELQDQLRELLK---DKRCLLVLDDVWDEE 114 (287)
T ss_dssp -----SCCSSHH------HHHHHHHHHHC---CTSEEEEEEEE-SHH
T ss_pred -----ccccccc------cccccchhhhc---cccceeeeeeecccc
Confidence 1111111 12334567776 449999999986443
No 121
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.99 E-value=0.025 Score=52.46 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34488899999999999999999999998754
No 122
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.98 E-value=0.024 Score=52.85 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34488899999999999999999999998643
No 123
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.97 E-value=0.025 Score=52.69 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=27.3
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4478899999999999999999999998643
No 124
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.96 E-value=0.023 Score=52.94 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=27.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999998863
No 125
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.93 E-value=0.025 Score=52.40 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=27.3
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3447889999999999999999999998864
No 126
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.93 E-value=0.024 Score=52.91 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4558899999999999999999999999864
No 127
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.027 Score=50.97 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=26.5
Q ss_pred eeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 154 MNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 154 l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
=+.+.+|+.++|.|++|+|||||++.|+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 37889999999999999999999999864
No 128
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.91 E-value=0.025 Score=52.09 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=27.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3447888999999999999999999999864
No 129
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.88 E-value=0.026 Score=52.49 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=27.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 21 NLNFHITKGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447889999999999999999999999864
No 130
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.88 E-value=0.026 Score=48.21 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=26.5
Q ss_pred eeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 154 l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEEccCCCccccceeeeccc
Confidence 367889999999999999999999988654
No 131
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.88 E-value=0.024 Score=53.23 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4558899999999999999999999999864
No 132
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.85 E-value=0.028 Score=51.82 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4458889999999999999999999998864
No 133
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.84 E-value=0.07 Score=53.50 Aligned_cols=109 Identities=20% Similarity=0.316 Sum_probs=63.7
Q ss_pred ccccccceeeeeeeee---eccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchH
Q 015796 141 EEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNME 217 (400)
Q Consensus 141 ~~~l~TGiraID~l~p---igkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e 217 (400)
.+.+.||+.++|..++ +-+|.=+=|+|++++|||+|+-...+++.+ .+..|+|+-+--.-
T Consensus 31 ~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~----------------~g~~~a~ID~e~~l- 93 (322)
T PF00154_consen 31 IEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK----------------QGGICAFIDAEHAL- 93 (322)
T ss_dssp S-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----------------TT-EEEEEESSS---
T ss_pred cceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc----------------ccceeEEecCcccc-
Confidence 3578999999999887 446777889999999999997665555431 12377777662221
Q ss_pred HHHHHHHHhhhcCC-CccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhH
Q 015796 218 TAQFFKRDFEENGS-MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSY 281 (400)
Q Consensus 218 ~~~~~~~~l~~~g~-l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~ 281 (400)
..+ +.+.+ |+ +++- +++-+ +. .+ -++.++|.+. ..|.-.++++||+...
T Consensus 94 d~~-~a~~l---Gvdl~rl-lv~~P-~~--~E------~al~~~e~li-rsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 94 DPE-YAESL---GVDLDRL-LVVQP-DT--GE------QALWIAEQLI-RSGAVDLVVVDSVAAL 143 (322)
T ss_dssp -HH-HHHHT---T--GGGE-EEEE--SS--HH------HHHHHHHHHH-HTTSESEEEEE-CTT-
T ss_pred hhh-HHHhc---Cccccce-EEecC-Cc--HH------HHHHHHHHHh-hcccccEEEEecCccc
Confidence 112 22334 33 5564 33332 21 22 3567888887 6677778899997543
No 134
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.84 E-value=0.025 Score=53.57 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=26.9
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 21 INLNINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 347889999999999999999999999864
No 135
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.80 E-value=0.028 Score=56.89 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=34.8
Q ss_pred cccccccceeeee-eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 140 PEEMIQTGISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 140 ~~~~l~TGiraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
+++.+- +..++| .=+.|.+|.-+-+.||+|||||||+.+||-
T Consensus 11 v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 11 VSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 444444 677775 668999999999999999999999999974
No 136
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.79 E-value=0.029 Score=51.84 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=27.1
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468889999999999999999999998643
No 137
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.79 E-value=0.032 Score=51.70 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=29.4
Q ss_pred eeeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 151 IDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 151 ID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
+|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 377789999999999999999999999998643
No 138
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.028 Score=53.22 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=28.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||++.|+..
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34488999999999999999999999998754
No 139
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.78 E-value=0.028 Score=51.39 Aligned_cols=35 Identities=9% Similarity=0.092 Sum_probs=29.1
Q ss_pred eeee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 148 iraI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
..++ |.=+.+.+|.+++|.|++|+|||||+..+..
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3455 3448999999999999999999999988753
No 140
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.027 Score=53.20 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=27.0
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999999999999864
No 141
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.77 E-value=0.028 Score=53.24 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=27.1
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 448889999999999999999999999864
No 142
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.74 E-value=0.033 Score=49.89 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=27.3
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478899999999999999999999998643
No 143
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.74 E-value=0.033 Score=50.37 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44578889999999999999999999998754
No 144
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.72 E-value=0.028 Score=51.99 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=26.9
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 347889999999999999999999999864
No 145
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.031 Score=52.75 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=28.5
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44 4457899999999999999999999999864
No 146
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.72 E-value=0.03 Score=51.93 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.|.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999998754
No 147
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.69 E-value=0.25 Score=50.13 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=55.0
Q ss_pred ccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHH---HHHHHHHhhhcCCCcc
Q 015796 158 ARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET---AQFFKRDFEENGSMER 234 (400)
Q Consensus 158 gkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~---~~~~~~~l~~~g~l~~ 234 (400)
.+...+.|.|++|+|||+++..+.++... . ...+.++|+-|-+.... ...+.+.+.....-
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~-------~-------~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~-- 116 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEE-------I-------AVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPP-- 116 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH-------h-------cCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCC--
Confidence 34566899999999999999988776431 0 02346777776654332 33333444321100
Q ss_pred EEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHH
Q 015796 235 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYA 282 (400)
Q Consensus 235 t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a 282 (400)
....+. .. .--.+.+++. ..++.+++++|++-.+.
T Consensus 117 ------~~~~~~-~~-----~~~~~~~~l~-~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 117 ------SSGLSF-DE-----LFDKIAEYLD-ERDRVLIVALDDINYLF 151 (394)
T ss_pred ------CCCCCH-HH-----HHHHHHHHHH-hcCCEEEEEECCHhHhh
Confidence 000011 11 1112345665 67889999999987554
No 148
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.67 E-value=0.032 Score=52.72 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=26.9
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 447889999999999999999999999864
No 149
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.67 E-value=0.032 Score=51.94 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=27.3
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|+.++|.|++|+|||||++.|+.
T Consensus 23 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 23 GVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3447888999999999999999999999864
No 150
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.032 Score=51.80 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=27.0
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 347889999999999999999999999864
No 151
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.63 E-value=0.03 Score=53.40 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34478889999999999999999999998754
No 152
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.034 Score=52.34 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.-+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34478889999999999999999999998643
No 153
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.63 E-value=0.034 Score=53.41 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 30 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 30 NINLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34478899999999999999999999998753
No 154
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.62 E-value=0.029 Score=52.42 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478889999999999999999999998643
No 155
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.60 E-value=0.03 Score=52.58 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=27.0
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|++++|.|++|+|||||++.|+.
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 19 VSLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred ceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 347889999999999999999999999864
No 156
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.60 E-value=0.031 Score=53.22 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5558899999999999999999999999874
No 157
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.037 Score=49.88 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=27.2
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478889999999999999999999998643
No 158
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.032 Score=52.49 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=27.5
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||++.|+..
T Consensus 24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3378899999999999999999999998654
No 159
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.56 E-value=0.035 Score=51.46 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||++.|+..
T Consensus 18 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34477899999999999999999999998754
No 160
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.56 E-value=0.035 Score=51.74 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999998643
No 161
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.56 E-value=0.03 Score=51.98 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=26.8
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 337889999999999999999999999864
No 162
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.56 E-value=0.035 Score=53.43 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999998753
No 163
>PRK09183 transposase/IS protein; Provisional
Probab=94.55 E-value=0.058 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.6
Q ss_pred eccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 157 igkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.+|+.+.|+|++|+|||+|+..|+..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999998876543
No 164
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.54 E-value=0.035 Score=53.24 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44578999999999999999999999998643
No 165
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.53 E-value=0.03 Score=52.76 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=26.8
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||++.|+.
T Consensus 19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 347889999999999999999999999864
No 166
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.53 E-value=0.031 Score=52.84 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999998643
No 167
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.037 Score=52.50 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=27.0
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 448889999999999999999999999864
No 168
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.52 E-value=0.035 Score=52.39 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44578889999999999999999999998743
No 169
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.52 E-value=0.036 Score=50.36 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 18 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999998653
No 170
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.035 Score=51.81 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=27.4
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478899999999999999999999998643
No 171
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.49 E-value=0.034 Score=53.10 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 22 GVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34488999999999999999999999988643
No 172
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.49 E-value=0.036 Score=52.02 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 34478899999999999999999999998754
No 173
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.48 E-value=0.038 Score=51.05 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999998643
No 174
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.47 E-value=0.035 Score=52.31 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=27.4
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999999999998754
No 175
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.46 E-value=0.037 Score=49.69 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478889999999999999999999998654
No 176
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.45 E-value=0.034 Score=46.48 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.2
Q ss_pred eeeeecCCCCChhhhHHHHHHHhc
Q 015796 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 162 r~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+++|.|++|+||||++++++...+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999987643
No 177
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.45 E-value=0.037 Score=51.65 Aligned_cols=31 Identities=6% Similarity=0.121 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|++++|.|++|+|||||+..|+.
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred cceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3447889999999999999999999999864
No 178
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.45 E-value=0.038 Score=51.70 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 5 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 5 KTDFVMGYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999999864
No 179
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.44 E-value=0.038 Score=52.34 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34488899999999999999999999998754
No 180
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.44 E-value=0.037 Score=51.13 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44578889999999999999999999988654
No 181
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.43 E-value=0.038 Score=52.29 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4448889999999999999999999999864
No 182
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.43 E-value=0.038 Score=52.49 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45588899999999999999999999998743
No 183
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.42 E-value=0.039 Score=52.71 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 18 GLNFSVAAGEKVALIGPSGSGKSTILRILMT 48 (252)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4447899999999999999999999999864
No 184
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.41 E-value=0.042 Score=53.53 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=33.3
Q ss_pred eeeee-eeeeeccCceeeeecCCCCChhhhHHHHHHHhc
Q 015796 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 148 iraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
++|+| .=+.|-+|...|+.|.+|||||||...|.+-..
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 58886 669999999999999999999999998876543
No 185
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.40 E-value=0.037 Score=52.68 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=27.3
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447889999999999999999999998864
No 186
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.40 E-value=0.053 Score=49.78 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=28.9
Q ss_pred eeeeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 150 aID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
..|.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3454578899999999999999999999998754
No 187
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.1 Score=48.28 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=52.9
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEe-----ccc-h-----HHHHHHHHHhh
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAM-----GVN-M-----ETAQFFKRDFE 227 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~i-----Ger-~-----e~~~~~~~~l~ 227 (400)
+|.=+.|.||+|+|||||++++-..... . .+|-+=. ||. . -..++|.+-+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l-~-----------------~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~ 64 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL-R-----------------FSVSATTRKPRPGEVDGVDYFFVTEEEFEELIE 64 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCe-E-----------------EEEEeccCCCCCCCcCCceeEeCCHHHHHHHHh
Confidence 6777889999999999999987544321 1 2222221 111 0 11255666666
Q ss_pred hcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEc
Q 015796 228 ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILT 276 (400)
Q Consensus 228 ~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~D 276 (400)
+...+++..++- ..|-.+. .-.|--. ++|+||+|-+|
T Consensus 65 ~~~fLE~a~~~g--------nyYGT~~---~~ve~~~-~~G~~vildId 101 (191)
T COG0194 65 RDEFLEWAEYHG--------NYYGTSR---EPVEQAL-AEGKDVILDID 101 (191)
T ss_pred cCCcEEEEEEcC--------CcccCcH---HHHHHHH-hcCCeEEEEEe
Confidence 777888888773 3332221 1222222 68999999998
No 188
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.39 E-value=0.047 Score=55.25 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=30.2
Q ss_pred eeeeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 150 aID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.+|.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 14 ~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 14 CLTVNLTLPAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3487889999999999999999999999998753
No 189
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.39 E-value=0.039 Score=52.11 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=28.9
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
++ |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 44 34578899999999999999999999998754
No 190
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.04 Score=52.90 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34478899999999999999999999998753
No 191
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.38 E-value=0.042 Score=51.85 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3447899999999999999999999999864
No 192
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.37 E-value=0.046 Score=49.26 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=27.4
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3477889999999999999999999998754
No 193
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.37 E-value=0.036 Score=53.49 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 29 PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3448889999999999999999999999864
No 194
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.36 E-value=0.04 Score=52.13 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||++.|+.
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999999864
No 195
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.36 E-value=0.042 Score=51.20 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=26.8
Q ss_pred eeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 154 l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 378889999999999999999999998743
No 196
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.35 E-value=0.041 Score=53.15 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44578899999999999999999999998753
No 197
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.35 E-value=0.04 Score=51.08 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=26.8
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 447889999999999999999999988864
No 198
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.35 E-value=0.04 Score=54.38 Aligned_cols=33 Identities=9% Similarity=0.196 Sum_probs=28.5
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+.+|+.++|.|++|+|||||+.+|+.
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 44 3447899999999999999999999999864
No 199
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.33 E-value=0.043 Score=50.61 Aligned_cols=32 Identities=9% Similarity=0.328 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 34488999999999999999999999998654
No 200
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=94.32 E-value=0.041 Score=55.75 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=29.9
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.++ |.=+.+.+|+.++|+|++|+|||||+.+|+..
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345 45588999999999999999999999998764
No 201
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.32 E-value=0.039 Score=52.67 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=27.0
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 24 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 24 IDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 347889999999999999999999999864
No 202
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.32 E-value=0.042 Score=51.79 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=28.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 66688999999999999999999999988643
No 203
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.31 E-value=0.043 Score=51.14 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||++.|+..
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999998643
No 204
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.30 E-value=0.043 Score=53.15 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=28.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45589999999999999999999999998643
No 205
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.28 E-value=0.043 Score=53.22 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=28.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45578999999999999999999999998643
No 206
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.28 E-value=0.042 Score=51.65 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 25 NISFSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3458889999999999999999999998864
No 207
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.26 E-value=0.041 Score=50.97 Aligned_cols=32 Identities=9% Similarity=0.259 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred eEEEEECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 34478889999999999999999999998643
No 208
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.26 E-value=0.044 Score=52.33 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=27.5
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 25 ISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3478899999999999999999999998753
No 209
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.26 E-value=0.04 Score=52.57 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34478889999999999999999999988643
No 210
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.25 E-value=0.042 Score=52.56 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=27.5
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 26 INIKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3478899999999999999999999998753
No 211
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.24 E-value=0.046 Score=52.54 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 22 ~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred eEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999998753
No 212
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.23 E-value=0.047 Score=52.83 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=27.7
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4488899999999999999999999998753
No 213
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.22 E-value=0.19 Score=48.37 Aligned_cols=22 Identities=5% Similarity=0.181 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhhhHHHHHHH
Q 015796 162 KIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 162 r~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|+.|.|++|+|||+|+..|...
T Consensus 15 r~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999998887654
No 214
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=94.21 E-value=0.045 Score=55.49 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=28.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|+|++|+|||||+.+|+..
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45578889999999999999999999998753
No 215
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.046 Score=52.10 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=27.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 21 NVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447888999999999999999999999874
No 216
>PRK10908 cell division protein FtsE; Provisional
Probab=94.20 E-value=0.047 Score=51.07 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=27.2
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478899999999999999999999998643
No 217
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.045 Score=52.89 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=27.1
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+-+|+.++|.|++|+|||||++.|+.
T Consensus 40 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 347888999999999999999999999875
No 218
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.20 E-value=0.046 Score=51.66 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=26.6
Q ss_pred eeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 154 l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 367889999999999999999999998643
No 219
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.19 E-value=0.045 Score=52.67 Aligned_cols=31 Identities=10% Similarity=0.288 Sum_probs=27.3
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 21 VSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478889999999999999999999998653
No 220
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.19 E-value=0.046 Score=51.86 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 39 ~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999998643
No 221
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.18 E-value=0.046 Score=52.05 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||++.|+..
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44478899999999999999999999998743
No 222
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.17 E-value=0.045 Score=55.44 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=29.1
Q ss_pred eeee-eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 149 raID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.+++ .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 3443 558889999999999999999999999875
No 223
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.16 E-value=0.047 Score=52.03 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=27.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 23 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3447889999999999999999999999864
No 224
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.041 Score=53.15 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=26.9
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (265)
T PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSR 55 (265)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 348889999999999999999999999864
No 225
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.14 E-value=0.046 Score=53.07 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=32.9
Q ss_pred ceeeee-eeeeeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 147 GISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 147 GiraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+-+++| .-++|-+|.-.-+.|++||||||+|+||.|-.
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 557774 66899999999999999999999999997644
No 226
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.13 E-value=0.046 Score=51.11 Aligned_cols=31 Identities=13% Similarity=0.272 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3448899999999999999999999999864
No 227
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=94.13 E-value=0.047 Score=54.70 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=30.5
Q ss_pred eeeee-eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 148 iraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.++++ .=+.|.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 45664 4479999999999999999999999998654
No 228
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.13 E-value=0.048 Score=53.37 Aligned_cols=32 Identities=3% Similarity=0.031 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 29 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 29 NTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999998653
No 229
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.12 E-value=0.18 Score=51.42 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.4
Q ss_pred eeeecCCCCChhhhHHHHHHHhc
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+-+.|++|+|||+|+.-|+..+.
T Consensus 165 mIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcC
Confidence 56779999999999998887654
No 230
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.11 E-value=0.048 Score=53.00 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999998643
No 231
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.11 E-value=0.047 Score=53.92 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=28.4
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 44 3447899999999999999999999999864
No 232
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.10 E-value=0.046 Score=55.46 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=28.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 45588999999999999999999999998753
No 233
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.10 E-value=0.047 Score=50.47 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=28.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45588999999999999999999999998653
No 234
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.09 E-value=0.051 Score=51.85 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34478999999999999999999999998754
No 235
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.09 E-value=0.051 Score=52.58 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=28.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44578899999999999999999999998753
No 236
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.09 E-value=0.054 Score=49.13 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34477889999999999999999999998643
No 237
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.08 E-value=0.044 Score=50.86 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=28.4
Q ss_pred eee-eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
+++ .-+++-+||.++|+|..|+|||||++||+-
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhc
Confidence 444 348899999999999999999999999854
No 238
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.053 Score=51.67 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4457889999999999999999999999874
No 239
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.07 E-value=0.051 Score=53.22 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999998643
No 240
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.07 E-value=0.048 Score=50.19 Aligned_cols=32 Identities=9% Similarity=0.260 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 27 ~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999998643
No 241
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.06 E-value=0.051 Score=50.88 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=27.2
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 33 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3378889999999999999999999988643
No 242
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.053 Score=51.09 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44577889999999999999999999998643
No 243
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.04 E-value=0.049 Score=51.99 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999988643
No 244
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=94.04 E-value=0.048 Score=52.81 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4448899999999999999999999999864
No 245
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.04 E-value=0.052 Score=52.62 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=27.4
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 28 VSFEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478899999999999999999999988654
No 246
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.04 E-value=0.054 Score=50.68 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=26.7
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 19 ISLTVPKNSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 347788999999999999999999998864
No 247
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.03 E-value=0.055 Score=49.74 Aligned_cols=30 Identities=7% Similarity=0.240 Sum_probs=27.0
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 457889999999999999999999998864
No 248
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.053 Score=51.71 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||++.|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3447889999999999999999999999874
No 249
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.048 Score=52.83 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=27.3
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3447889999999999999999999998864
No 250
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.01 E-value=0.05 Score=51.96 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=27.3
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|+.++|.|++|+|||||++.|+.-
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3378899999999999999999999998753
No 251
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.99 E-value=0.052 Score=50.19 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34477889999999999999999999998653
No 252
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.99 E-value=0.064 Score=51.44 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=34.8
Q ss_pred ccccceeee-eeeeeeccCceeeeecCCCCChhhhHHHHHHHhc
Q 015796 143 MIQTGISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 143 ~l~TGiraI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
.++-|.+++ |.-+.|-+|+.+.|+|++|+|||||+..|++..+
T Consensus 12 ~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred ecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 344566777 4558899999999999999999999999876433
No 253
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.99 E-value=0.063 Score=53.46 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=31.5
Q ss_pred eeeeee-eeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 148 ISTIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 148 iraID~-l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
+++||. =+.+.+|+.++|.|.+|+|||++...|.+-
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l 54 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL 54 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc
Confidence 789964 499999999999999999999998877653
No 254
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.99 E-value=0.055 Score=51.98 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4447899999999999999999999999874
No 255
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.98 E-value=0.056 Score=51.21 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=26.5
Q ss_pred eeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 154 MNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 154 l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 48 (237)
T TIGR00968 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAG 48 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 37799999999999999999999998864
No 256
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.98 E-value=0.052 Score=52.00 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999998654
No 257
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.97 E-value=0.056 Score=52.44 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 42 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 42 NINLDIHENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34478889999999999999999999998754
No 258
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.96 E-value=0.053 Score=52.15 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 31 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 31 NINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34478899999999999999999999998743
No 259
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.95 E-value=0.051 Score=52.20 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=30.4
Q ss_pred eeee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 148 iraI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
+.++ |.=+.+-+|.++||+|..|.|||||++.|+.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4555 5669999999999999999999999998853
No 260
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.051 Score=52.46 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 28 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3447888999999999999999999999874
No 261
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.95 E-value=0.048 Score=50.37 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999988643
No 262
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.93 E-value=0.63 Score=39.74 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.3
Q ss_pred eeeecCCCCChhhhHHHHHHHhc
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+.+.|++|+||||++.++++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 46889999999999999876543
No 263
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.056 Score=51.63 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=27.0
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 25 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 25 ITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 347889999999999999999999999874
No 264
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.056 Score=52.67 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=28.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 55588999999999999999999999998753
No 265
>PRK08118 topology modulation protein; Reviewed
Probab=93.91 E-value=0.05 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.5
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhc
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+|+.|+|++|+|||||+..|++..+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987654
No 266
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.90 E-value=0.052 Score=54.75 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=28.5
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+-+|.-+.+.||+||||||||.+||-
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44 3447899999999999999999999999864
No 267
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.90 E-value=0.057 Score=52.88 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4557899999999999999999999999875
No 268
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.90 E-value=0.051 Score=52.45 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45588999999999999999999999998643
No 269
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.89 E-value=0.058 Score=52.30 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~G 72 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINR 72 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4458889999999999999999999999864
No 270
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.88 E-value=0.058 Score=52.81 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.|.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999998754
No 271
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.87 E-value=0.06 Score=51.26 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44478889999999999999999999998753
No 272
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.87 E-value=0.054 Score=51.60 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=27.4
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||++.|+..
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3478899999999999999999999998753
No 273
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.86 E-value=0.06 Score=50.66 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=28.5
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44 4447899999999999999999999998864
No 274
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.86 E-value=0.054 Score=50.86 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.-+.+-+|+.++|.|++|+|||||++.|+..
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred CceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 34578899999999999999999999998643
No 275
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.85 E-value=0.56 Score=44.74 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=20.3
Q ss_pred ceeeeecCCCCChhhhHHHHHHHh
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+-+.|.|++|+|||||+..+.+..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc
Confidence 358899999999999999887653
No 276
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.056 Score=51.48 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=27.6
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 22 INLPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3378999999999999999999999998754
No 277
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.84 E-value=0.055 Score=51.10 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=26.9
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 448889999999999999999999998864
No 278
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.82 E-value=0.058 Score=54.04 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=29.9
Q ss_pred eeee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 148 iraI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++++ |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~g 63 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence 4556 4558899999999999999999999998864
No 279
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.81 E-value=0.058 Score=55.21 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=28.9
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+.+|+.++|+|++|+|||||+.+|+.
T Consensus 29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaG 62 (375)
T PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG 62 (375)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 44 3558899999999999999999999999874
No 280
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.81 E-value=0.064 Score=49.87 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=28.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 56688999999999999999999999998653
No 281
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.80 E-value=0.059 Score=52.86 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.|.+|++++|.|++|+|||||+..|+.
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~G 54 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 5568899999999999999999999998864
No 282
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.067 Score=48.10 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=27.3
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3478889999999999999999999998654
No 283
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.055 Score=50.09 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=26.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+| +++|.|++|+|||||++.|+.
T Consensus 18 ~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 18 GVSLTLGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred ceeEEEcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 344778889 999999999999999999864
No 284
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.78 E-value=0.056 Score=52.66 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=27.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG 49 (272)
T PRK13547 19 DLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49 (272)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999999864
No 285
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=93.77 E-value=0.061 Score=54.01 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=30.4
Q ss_pred eeee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 148 iraI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.+++ |.=+.|.+|+.++|.|++|+|||||+..|+.
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G 69 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIG 69 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4566 4568999999999999999999999999864
No 286
>PRK05973 replicative DNA helicase; Provisional
Probab=93.76 E-value=0.43 Score=45.87 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=25.2
Q ss_pred eccCceeeeecCCCCChhhhHHHHHHHhc
Q 015796 157 IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 157 igkGqr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+-+|+=+.|.|.+|+|||+++.+++.++.
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999998877653
No 287
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.75 E-value=0.062 Score=52.18 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=28.3
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45578999999999999999999999998643
No 288
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.73 E-value=0.063 Score=51.24 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=27.3
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 23 INLPIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3377889999999999999999999998753
No 289
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.73 E-value=0.061 Score=54.38 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=29.3
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 455 4558899999999999999999999999864
No 290
>PRK08181 transposase; Validated
Probab=93.72 E-value=0.1 Score=51.08 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.6
Q ss_pred ccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 158 gkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
-+++-+.+.|++|+|||.|+..|++++
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHH
Confidence 377889999999999999998887665
No 291
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.72 E-value=0.22 Score=49.01 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=36.7
Q ss_pred cccccccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHhc
Q 015796 140 PEEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 140 ~~~~l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
.-+.+.||.+.+|-++- +-+|.-.=|||+.|+|||+|+.+++.++.
T Consensus 38 ~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq 85 (279)
T COG0468 38 DIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQ 85 (279)
T ss_pred ccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhh
Confidence 35678999999998766 22555578999999999999988876654
No 292
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.063 Score=50.67 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.5
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478899999999999999999999998754
No 293
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.68 E-value=0.06 Score=51.74 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 22 AVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34477889999999999999999999998643
No 294
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.067 Score=50.97 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=27.5
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4478899999999999999999999998753
No 295
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.68 E-value=0.066 Score=52.48 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=28.4
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~G 55 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG 55 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 44 3448899999999999999999999999864
No 296
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.67 E-value=0.066 Score=52.09 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|++++|.|++|+|||||++.|+.
T Consensus 38 ~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447889999999999999999999999874
No 297
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.67 E-value=0.047 Score=52.75 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=25.3
Q ss_pred eeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 156 pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.+.+|++++|.|++|+|||||+..|+..
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999999988654
No 298
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.66 E-value=0.064 Score=51.86 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=28.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45588899999999999999999999998653
No 299
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.66 E-value=0.064 Score=51.98 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 31 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 31 NVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3448899999999999999999999999864
No 300
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.66 E-value=0.066 Score=51.07 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 22 NINMDFPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34478899999999999999999999998653
No 301
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.071 Score=51.57 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 37 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 37 DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44478899999999999999999999998753
No 302
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.65 E-value=0.071 Score=49.84 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=27.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 23 ~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447888999999999999999999999864
No 303
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.65 E-value=0.066 Score=52.82 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|+.|+|||||+.+|+.
T Consensus 20 ~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred EeEEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3448899999999999999999999999864
No 304
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.64 E-value=0.068 Score=52.35 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 57 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34478899999999999999999999998743
No 305
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.076 Score=46.84 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=27.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.-+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4457889999999999999999999998864
No 306
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.63 E-value=0.052 Score=51.00 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=25.1
Q ss_pred eeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 156 pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.+-+|+.++|.|++|+|||||+..|+..
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999998753
No 307
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.067 Score=53.07 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=28.5
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 44 3458899999999999999999999998863
No 308
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.61 E-value=0.07 Score=51.25 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=28.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||++.|+..
T Consensus 25 ~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 25 GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34488899999999999999999999999754
No 309
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.61 E-value=0.068 Score=49.04 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=26.6
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+-+|+.++|.|++|+|||||++.|+.
T Consensus 26 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 26 ISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 336888999999999999999999999863
No 310
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=93.60 E-value=0.29 Score=47.28 Aligned_cols=168 Identities=12% Similarity=0.156 Sum_probs=84.5
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEe
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLN 240 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~ 240 (400)
-|++++|.+|+|||+|+..|....... .......+..+... .+ ...| +.+.|+.
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~~~~---------v~~~~~~T~~~~~~-~~-------------~~~g---~~i~vID 85 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAA---------TSAFQSETLRVREV-SG-------------TVDG---FKLNIID 85 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcc---------cCCCCCceEEEEEE-EE-------------EECC---eEEEEEE
Confidence 579999999999999998876432100 00000011111110 00 0112 3455555
Q ss_pred CCCCCHH--HHHhHHHHHH-HHHHHhhhhCCCeEEEEEcchhh----HH--HHHHHHHHhcCC----------------C
Q 015796 241 LANDPTI--ERIITPRIAL-TTAEYLAYECGKHVLVILTDMSS----YA--DALREVSAAREE----------------V 295 (400)
Q Consensus 241 t~~~~~~--~r~~a~~~a~-tiAEyfr~d~G~~Vlli~Dsltr----~a--~A~reisl~lg~----------------~ 295 (400)
|..-... ..+ .-..++ .+.+|+. +++.|++++++.+.. +. ++.+.|...+|. |
T Consensus 86 TPGl~~~~~~~~-~~~~~~~~I~~~l~-~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 86 TPGLLESVMDQR-VNRKILSSIKRYLK-KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred CCCcCcchhhHH-HHHHHHHHHHHHHh-ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 5332211 111 111222 3445665 678888888876642 23 456666665653 4
Q ss_pred CCCCCCCCchhhh----HHHHHHhccCCCCCCCceeEEeeEeecCCCCCCCcccccccccCeEEEe
Q 015796 296 PGRRGYPGYMYTD----LAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYI 357 (400)
Q Consensus 296 p~~~gyp~~~~~~----l~~l~ERag~~~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L 357 (400)
|...-|+++.|.. .+.+...|-+... +-.-..+|+.+++....-+-=..--+-.-|||+++
T Consensus 164 p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~ 228 (249)
T cd01853 164 PDGLNGTPFSYDRFVAQRSHIVQQAIQQAA-GDPRLENPVSLVENHPRCRKNREGEKVLPNGTVWK 228 (249)
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHhhhhc-cCccccCCEEEEeCCCcccCCCCCCeECCCCCccH
Confidence 6666777776644 4555555544322 33346678888885433221111113355666553
No 311
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.59 E-value=0.061 Score=52.29 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=29.5
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.++ |.=+++-+|.-.+|.|+.|+|||||++.|++
T Consensus 16 ~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344 4558999999999999999999999999876
No 312
>PRK12377 putative replication protein; Provisional
Probab=93.59 E-value=0.15 Score=49.35 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.5
Q ss_pred ceeeeecCCCCChhhhHHHHHHHh
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+-+.+.|++|+|||.|+..|++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999998887664
No 313
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.57 E-value=0.072 Score=49.63 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 22 NISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred ceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 34488899999999999999999999998643
No 314
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.071 Score=51.85 Aligned_cols=31 Identities=10% Similarity=0.222 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4448899999999999999999999999864
No 315
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.57 E-value=0.067 Score=54.52 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3447889999999999999999999999874
No 316
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.56 E-value=0.073 Score=51.33 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|++++|+|++|+|||||+..|+.
T Consensus 34 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 34 NINMMVHEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4557888999999999999999999999864
No 317
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.55 E-value=0.073 Score=51.02 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 23 GVSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478889999999999999999999988643
No 318
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.55 E-value=0.07 Score=51.08 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=26.7
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 21 LSLSLPTGKITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred eeeEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 337889999999999999999999998864
No 319
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.53 E-value=0.29 Score=50.49 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.4
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhc
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
.-+.+.|++|+|||+|+..|++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999987653
No 320
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.52 E-value=0.073 Score=51.76 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 23 GLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34478999999999999999999999998753
No 321
>PRK07261 topology modulation protein; Provisional
Probab=93.52 E-value=0.063 Score=48.62 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=22.1
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhc
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+|+.|+|.+|+|||||+.+|++..+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987643
No 322
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=93.52 E-value=0.071 Score=54.87 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=31.2
Q ss_pred eeeeeee-eeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 148 ISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 148 iraID~l-~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
++++|.+ +++.+||.+||.|.+|+|||||-..+.+-
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL 336 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh
Confidence 6788755 89999999999999999999998777653
No 323
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.50 E-value=0.062 Score=51.17 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=26.9
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 26 LNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred ceeEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 347889999999999999999999998865
No 324
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.49 E-value=0.59 Score=42.25 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=26.0
Q ss_pred cccceeeeeeeee--eccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 144 l~TGiraID~l~p--igkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.++++..|-+++ +.+|+-..|.|++|+|||+++.+++...
T Consensus 14 ~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 14 LDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp HHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred ccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4445554544432 3489999999999999999988876544
No 325
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.49 E-value=0.067 Score=53.67 Aligned_cols=36 Identities=11% Similarity=0.275 Sum_probs=30.5
Q ss_pred eeeee-eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 148 iraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
++++| .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl 65 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL 65 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 45664 4489999999999999999999999998643
No 326
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.49 E-value=0.078 Score=48.70 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.3
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHh
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
..+.+.|.|+.|+|||+|+.++.+..
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 46889999999999999999987664
No 327
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.46 E-value=0.073 Score=50.76 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=29.2
Q ss_pred eeee-eeeeeeccCceeeeecCCCCChhhhHHHHH
Q 015796 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 148 iraI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
+.++ |.=+.+-+|.-+.|.|++|+||||||..|.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555 455899999999999999999999998874
No 328
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.45 E-value=0.064 Score=50.92 Aligned_cols=31 Identities=10% Similarity=0.242 Sum_probs=27.1
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 20 LNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3367889999999999999999999988653
No 329
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.44 E-value=0.079 Score=51.16 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 26 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (261)
T PRK14263 26 DSHVPIRKNEITGFIGPSGCGKSTVLRSLNR 56 (261)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 4458899999999999999999999998864
No 330
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.43 E-value=0.079 Score=51.39 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 43 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44478889999999999999999999998754
No 331
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.42 E-value=0.078 Score=51.79 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=27.5
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 26 ISFSIPRGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 3468889999999999999999999998754
No 332
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=93.41 E-value=0.093 Score=53.10 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=29.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 77788999999999999999999999998753
No 333
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.41 E-value=0.079 Score=51.67 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=28.3
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.|.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45588999999999999999999999998653
No 334
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.41 E-value=0.078 Score=52.46 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=28.6
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+.+|+.++|+|++|+|||||++.|+.
T Consensus 60 iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~G 93 (305)
T PRK14264 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR 93 (305)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44 3458899999999999999999999999864
No 335
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.40 E-value=0.079 Score=51.51 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=28.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44588999999999999999999999998753
No 336
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.38 E-value=0.078 Score=52.06 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45578899999999999999999999988643
No 337
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.083 Score=49.97 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=27.3
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.|.+|++++|.|++|+|||||+..|+..
T Consensus 18 is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478889999999999999999999988653
No 338
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.33 E-value=0.081 Score=51.91 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=27.5
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.|-+|+.++|.|++|+|||||+..|+..
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3388999999999999999999999998653
No 339
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.32 E-value=0.074 Score=53.25 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=30.6
Q ss_pred eeeee-eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 148 iraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.+++| .=+.|.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 45664 4599999999999999999999999988653
No 340
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.31 E-value=0.079 Score=53.93 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|+|++|+|||||+.+|+-
T Consensus 23 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 23 DLSLEIEAGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447889999999999999999999999874
No 341
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.30 E-value=0.08 Score=53.41 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=29.8
Q ss_pred eeee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 148 iraI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
..++ |.=+.+.+|+.++|.|+.|+|||||+.+|+.
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3456 3448899999999999999999999999864
No 342
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.29 E-value=0.081 Score=51.75 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.8
Q ss_pred eeeeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 154 l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
=+.|-+|++++|.|++|+|||||+..|++-.
T Consensus 24 sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 24 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 3789999999999999999999999987653
No 343
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.27 E-value=0.083 Score=50.88 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 25 GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34478899999999999999999999998754
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.26 E-value=0.091 Score=46.08 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=26.1
Q ss_pred eeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 155 ~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 67889999999999999999999988643
No 345
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=93.25 E-value=0.083 Score=54.07 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=27.3
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 458889999999999999999999999874
No 346
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.25 E-value=0.081 Score=50.94 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44478899999999999999999999998743
No 347
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.24 E-value=0.066 Score=51.39 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=24.6
Q ss_pred eeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 156 pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999998653
No 348
>PRK14974 cell division protein FtsY; Provisional
Probab=93.23 E-value=0.85 Score=46.07 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=22.6
Q ss_pred ccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 158 gkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
++...+++.|++|+||||++..++.+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999988887653
No 349
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.22 E-value=0.087 Score=51.40 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.6
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4488899999999999999999999998754
No 350
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.17 E-value=0.094 Score=50.35 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=27.2
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 40 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3378889999999999999999999988653
No 351
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.17 E-value=0.087 Score=53.10 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=29.3
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.++ |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344 34488899999999999999999999998643
No 352
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.16 E-value=0.49 Score=42.03 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=18.9
Q ss_pred eeccCceeeeecCCCCChhhhHHHHHHHhc
Q 015796 156 SIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 156 pigkGqr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
.-+.+.-+.|.|++|+|||+|+..+..+..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345566689999999999999988776654
No 353
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.13 E-value=0.086 Score=50.51 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=27.1
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 20 VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3378889999999999999999999998643
No 354
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.07 E-value=0.086 Score=52.26 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=29.3
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.++ |.=+.+-+|+.++|.|+.|+|||||+..|+..
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 455 34488899999999999999999999998643
No 355
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.02 E-value=0.099 Score=50.87 Aligned_cols=32 Identities=9% Similarity=0.167 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34488999999999999999999999998754
No 356
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=93.00 E-value=0.083 Score=53.83 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=29.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
|.=+.+.+|+.++|.|++|+|||||+.+|++-.
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 455889999999999999999999999997643
No 357
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.99 E-value=0.099 Score=52.25 Aligned_cols=34 Identities=3% Similarity=0.169 Sum_probs=28.8
Q ss_pred eee-eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 150 aID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 453 3388999999999999999999999998643
No 358
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.99 E-value=0.49 Score=51.92 Aligned_cols=102 Identities=17% Similarity=0.241 Sum_probs=63.6
Q ss_pred cCcee-eeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc-hHHH-HHHHHHhhhcCCC---
Q 015796 159 RGQKI-PLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-META-QFFKRDFEENGSM--- 232 (400)
Q Consensus 159 kGqr~-~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~-~~~~~~l~~~g~l--- 232 (400)
.-||| ++.|++|.|||||+.-||+|+| .. ++=+=+..+| .+++ +.++..++...++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG-------Ys-----------VvEINASDeRt~~~v~~kI~~avq~~s~l~ad 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG-------YS-----------VVEINASDERTAPMVKEKIENAVQNHSVLDAD 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC-------ce-----------EEEecccccccHHHHHHHHHHHHhhccccccC
Confidence 34664 6779999999999999999998 22 4444556777 4444 3444445544444
Q ss_pred -ccEEEEEeCCCCCH---HHHHhHHHHHHHHHHHhhhhCC--------------CeEEEEEcchh
Q 015796 233 -ERVTLFLNLANDPT---IERIITPRIALTTAEYLAYECG--------------KHVLVILTDMS 279 (400)
Q Consensus 233 -~~t~vv~~t~~~~~---~~r~~a~~~a~tiAEyfr~d~G--------------~~Vlli~Dslt 279 (400)
+=+|+|+.--|-.+ ..-.++..-+.-.+++.. +-+ +-++.|+-|++
T Consensus 386 srP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gk-q~~~~~~rkkkr~~~L~RPIICICNdLY 449 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGK-QAKKDKKRKKKRSKLLTRPIICICNDLY 449 (877)
T ss_pred CCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcC-cccchhhhhhhccccccCCEEEEecCcc
Confidence 34678888888777 233333333334455554 222 34788888873
No 359
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.93 E-value=0.11 Score=48.36 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+ +.++|.|++|+|||||+..|+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhC
Confidence 88899999 9999999999999999999864
No 360
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.92 E-value=0.08 Score=56.12 Aligned_cols=32 Identities=9% Similarity=0.274 Sum_probs=28.3
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++-|.+.
T Consensus 353 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 353 GVSLDLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44588999999999999999999999988654
No 361
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=92.90 E-value=0.09 Score=50.27 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=27.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3447889999999999999999999998753
No 362
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.88 E-value=0.1 Score=50.72 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=28.4
Q ss_pred eee-eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 150 aID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
+++ .=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 443 3378889999999999999999999988643
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=92.86 E-value=0.078 Score=58.72 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=28.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.|..|.|++|.|+.|+|||||+..|+.
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 5669999999999999999999999999864
No 364
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=92.83 E-value=0.085 Score=57.61 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=28.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|+|+.|+|||||+..|+..
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~ 50 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45588999999999999999999999998753
No 365
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.82 E-value=0.1 Score=50.80 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478889999999999999999999998643
No 366
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.82 E-value=0.1 Score=52.43 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=28.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
|.=+.|-+|++++|.|++|+|||+|+..|++..
T Consensus 100 ~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 100 DLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344788999999999999999999999987653
No 367
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.78 E-value=0.091 Score=49.87 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=25.0
Q ss_pred eeeccCceeeeecCCCCChhhhHHHHH
Q 015796 155 NSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 155 ~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
+.+.+|+.+.|+||+|+|||||+..|.
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999999998764
No 368
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.72 E-value=2.1 Score=38.17 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=18.4
Q ss_pred eeeecCCCCChhhhHHHHHHHh
Q 015796 163 IPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.+.|++|+|||+++..++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999988877553
No 369
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.56 E-value=0.6 Score=46.75 Aligned_cols=102 Identities=10% Similarity=0.179 Sum_probs=54.6
Q ss_pred ccCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccch---HHHHHHHHHhhhcCCCcc
Q 015796 158 ARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM---ETAQFFKRDFEENGSMER 234 (400)
Q Consensus 158 gkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~---e~~~~~~~~l~~~g~l~~ 234 (400)
.+++.+.|.|++|+|||+++..+.++.... .+ ..+..+..+|+-|-+-. +....+.+.+...+ .
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~-----~~-----~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~---~ 104 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEA-----AE-----DRDVRVVTVYVNCQILDTLYQVLVELANQLRGSG---E 104 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHH-----hh-----ccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcC---C
Confidence 344679999999999999998887654210 00 00112466777765533 33344444443211 0
Q ss_pred EEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHH
Q 015796 235 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYA 282 (400)
Q Consensus 235 t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a 282 (400)
. ......+.... --.+-+++. ..++.++|++|.+-.+.
T Consensus 105 ~---~~~~~~~~~~~------~~~l~~~l~-~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 105 E---VPTTGLSTSEV------FRRLYKELN-ERGDSLIIVLDEIDYLV 142 (365)
T ss_pred C---CCCCCCCHHHH------HHHHHHHHH-hcCCeEEEEECchhhhc
Confidence 0 00111111111 112334555 56889999999987664
No 370
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=92.55 E-value=0.11 Score=55.11 Aligned_cols=34 Identities=9% Similarity=0.245 Sum_probs=29.5
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
++ |.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 44 45578999999999999999999999998764
No 371
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=92.52 E-value=0.21 Score=52.66 Aligned_cols=137 Identities=7% Similarity=-0.146 Sum_probs=117.4
Q ss_pred CCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccCCCC
Q 015796 242 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG 321 (400)
Q Consensus 242 ~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~~~~ 321 (400)
...+..+..+|-++++.++++++ |..+|+-+.++.+.+++-+++|...-+..-+....|+...-.-|++.+++...
T Consensus 291 iaNTSnMPVAAREasIYtGiTia-EY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYE--- 366 (588)
T COG1155 291 IANTSNMPVAAREASIYTGITIA-EYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYE--- 366 (588)
T ss_pred eecCccchHHHhhhhhhhhhhHH-HHHHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHH---
Confidence 45566788999999999999999 99999999999999999999999998888888888998888899999988864
Q ss_pred CCCcee--------EEeeEeecCCCCCCCcccccccccCeEEEecHhhhhcCCCCCcccCCCccccCcc
Q 015796 322 RKGSIT--------QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKS 382 (400)
Q Consensus 322 ~~GSiT--------~i~~v~~~~~d~~dpi~~~~~~i~dg~i~L~r~la~~g~~PaID~l~S~SR~~~~ 382 (400)
+.|.+. ...+|..+.++..-++.+.+-..|=.-+-+.-.|..+.++|-..|..+++-.-+.
T Consensus 367 RaG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~ 435 (588)
T COG1155 367 RAGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSL 435 (588)
T ss_pred hcCeeeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHH
Confidence 567554 4445555677899999999988887778899999999999999999998765554
No 372
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=92.51 E-value=0.097 Score=57.09 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=28.3
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|+|+.|+|||||+..|+..
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45578999999999999999999999998643
No 373
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.46 E-value=0.13 Score=50.29 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=28.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44588899999999999999999999998654
No 374
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=92.46 E-value=0.12 Score=53.45 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=29.4
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.++ |.=+.+.+|+.++|+|++|+|||||+++|+..
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl 52 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT 52 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 344 34488899999999999999999999998753
No 375
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.39 E-value=0.11 Score=54.78 Aligned_cols=35 Identities=9% Similarity=0.181 Sum_probs=29.5
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.++ |.=+.+.+|+.++|+|++|+|||||++.|+..
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 344 45578999999999999999999999998643
No 376
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.11 Score=55.00 Aligned_cols=34 Identities=12% Similarity=0.336 Sum_probs=29.4
Q ss_pred eeee-eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 149 raID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++++ .-+++-.|+|+.|.|.+|+|||||++-+++
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 4553 348899999999999999999999999876
No 377
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.26 E-value=0.12 Score=55.07 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=28.8
Q ss_pred eee-eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
+++ .=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 49 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGG 49 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 453 448999999999999999999999999874
No 378
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.21 E-value=0.12 Score=48.45 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.-+.|..|+-+-+.|++|||||||++-++-
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHhc
Confidence 4557789999999999999999999987754
No 379
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=92.21 E-value=0.12 Score=55.39 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+||+++|.|++|+|||||++.|++.
T Consensus 361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 361 NINFKIPAGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CceEEeCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34477889999999999999999999988764
No 380
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.19 E-value=0.32 Score=46.85 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=22.8
Q ss_pred eccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 157 igkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
......+.+.|++|+|||+++..+++..
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455668899999999999998887754
No 381
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=92.15 E-value=0.12 Score=55.34 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=29.8
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.++ |.=+.+..|++++|.|++|+|||||+..|+..
T Consensus 21 ~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~ 56 (556)
T PRK11819 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 56 (556)
T ss_pred eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345 44589999999999999999999999998753
No 382
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.14 E-value=0.1 Score=55.74 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=29.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.-+.+-.|+|+|++|..|+||||||+.|+..
T Consensus 21 ~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~ 52 (530)
T COG0488 21 NVSLTLNPGERIGLVGRNGAGKSTLLKILAGE 52 (530)
T ss_pred CCcceeCCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 67789999999999999999999999998643
No 383
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.11 E-value=0.13 Score=47.70 Aligned_cols=32 Identities=9% Similarity=0.264 Sum_probs=27.3
Q ss_pred eeeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 151 IDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 151 ID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.+.=+++-.|+++.|.|++|.|||||+.-|+-
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHh
Confidence 34446788999999999999999999988865
No 384
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=92.11 E-value=0.097 Score=55.13 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=28.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++=+++.+|.|.|+.|..|+||||||.+|++
T Consensus 98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred CCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 4558899999999999999999999999987
No 385
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.04 E-value=0.15 Score=48.91 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=28.7
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
.++ |.-+.+.+|++++|.|++|+|||||+..++
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~ 51 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN 51 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 444 667899999999999999999999998864
No 386
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.03 E-value=0.12 Score=57.17 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=27.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.|-.|++++|+|.+|+|||||++.+.+
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred ceeEEeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447789999999999999999999998854
No 387
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=0.48 Score=48.93 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=33.4
Q ss_pred cccccceeeeeeee--eeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 142 ~~l~TGiraID~l~--pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
..+.||+.-+|=.+ =+.+|.=++|=|.+|.|||||+-|++.+-
T Consensus 73 ~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~l 117 (456)
T COG1066 73 PRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 117 (456)
T ss_pred ccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHH
Confidence 44678887777433 35789999999999999999998876543
No 388
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.02 E-value=0.13 Score=42.85 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.5
Q ss_pred eeeecCCCCChhhhHHHHHHHh
Q 015796 163 IPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
|+|.|.+|+|||||+..|.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988763
No 389
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=92.01 E-value=0.12 Score=55.53 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=28.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+||+++|.|++|+|||||++.|.+.
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl 390 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45589999999999999999999999988654
No 390
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=91.99 E-value=0.13 Score=54.06 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=29.3
Q ss_pred eeee-eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
++++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3453 4488999999999999999999999998643
No 391
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.99 E-value=0.12 Score=50.64 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=30.1
Q ss_pred eeeeeeeeeccCceeeeecCCCCChhhhHHHHH
Q 015796 149 STIDVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 149 raID~l~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
.+-|.-+.|-+|++.|+.|+.|.||||+++|+.
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLT 71 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT 71 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHh
Confidence 345889999999999999999999999999984
No 392
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.96 E-value=0.15 Score=46.98 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=24.3
Q ss_pred eeeccCceeeeecCCCCChhhhHHHHH
Q 015796 155 NSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 155 ~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
+.+-+|++++|.|++|+|||||+.-++
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlA 57 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHh
Confidence 567899999999999999999997764
No 393
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=91.95 E-value=0.14 Score=54.02 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=28.6
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G 49 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG 49 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45 3457899999999999999999999999864
No 394
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.94 E-value=0.15 Score=52.75 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl 77 (400)
T PRK10070 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred eEEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 34478899999999999999999999998764
No 395
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=91.93 E-value=0.15 Score=54.34 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=31.3
Q ss_pred eeeee-eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 148 iraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++++| .=+.+-+|...+|.|++|+|||||+..|+.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 68885 559999999999999999999999998864
No 396
>PRK06526 transposase; Provisional
Probab=91.90 E-value=0.17 Score=48.93 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=22.8
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHh
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+++.+.+.|++|+|||+|+..|+..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 67789999999999999998887664
No 397
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.81 E-value=0.14 Score=54.09 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=27.3
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999999999874
No 398
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.80 E-value=1.6 Score=43.78 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=23.7
Q ss_pred ccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 158 gkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
.+|+.+++.|++|+||||++..++...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 578899999999999999998887654
No 399
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.78 E-value=1.8 Score=44.40 Aligned_cols=43 Identities=14% Similarity=0.361 Sum_probs=32.6
Q ss_pred cccccceeeeeee-eeeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 142 EMIQTGISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 142 ~~l~TGiraID~l-~pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.+..-+.+++.. ..+.+|+-+++.|++|+||||++..|+...
T Consensus 118 ~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 118 SVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred HHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444556666555 346789999999999999999998887653
No 400
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.77 E-value=0.14 Score=54.05 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=29.5
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.++ |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV 54 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 345 34588899999999999999999999998753
No 401
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=91.77 E-value=0.14 Score=55.94 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=29.0
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
++ |.=+.+-+|++++|.|+.|+|||||+..|+..
T Consensus 327 il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 361 (638)
T PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE 361 (638)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44 34578999999999999999999999998743
No 402
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.74 E-value=0.15 Score=54.56 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=29.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHHhc
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
|.=+.+-+|+|++|.|+.|+|||||++.|+...+
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~ 373 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG 373 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc
Confidence 5568889999999999999999999999865543
No 403
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.73 E-value=0.38 Score=49.28 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=20.5
Q ss_pred eeeecCCCCChhhhHHHHHHHhc
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+||.||+|||||.++..+++..+
T Consensus 151 llL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999887765
No 404
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=91.71 E-value=0.15 Score=54.13 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=29.5
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.++ |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~ 58 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL 58 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 355 45588899999999999999999999988643
No 405
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.70 E-value=0.11 Score=46.16 Aligned_cols=22 Identities=5% Similarity=0.172 Sum_probs=17.7
Q ss_pred eeeeecCCCCChhhhHHHHHHH
Q 015796 162 KIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 162 r~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|+.|.|++++|||||+..|+++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7899999999999999999876
No 406
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=91.69 E-value=0.16 Score=47.87 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=31.5
Q ss_pred cceeee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 146 TGISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 146 TGiraI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
+=++++ |.-+..-+|+=.||+|+.|.||||++.||+.
T Consensus 13 ~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiat 50 (245)
T COG4555 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT 50 (245)
T ss_pred CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHH
Confidence 334455 7889999999999999999999999999864
No 407
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=91.67 E-value=0.15 Score=54.26 Aligned_cols=31 Identities=6% Similarity=0.297 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.-+.+.+|++++|.|++|+|||||+..|+.
T Consensus 337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G 367 (530)
T PRK15064 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367 (530)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3558899999999999999999999999864
No 408
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=91.66 E-value=0.15 Score=56.27 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++.|++.
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44488999999999999999999999988653
No 409
>PRK06921 hypothetical protein; Provisional
Probab=91.58 E-value=0.54 Score=45.78 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.2
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHh
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
.+.-+.+.|++|+|||.|+..|++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 46779999999999999998887654
No 410
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=91.56 E-value=0.16 Score=55.20 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=31.0
Q ss_pred eeee-eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 148 iraI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
..++ |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl 65 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL 65 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 4566 45689999999999999999999999998754
No 411
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=91.53 E-value=0.15 Score=53.72 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=29.2
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
+++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G 308 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 455 3457899999999999999999999999874
No 412
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=91.49 E-value=0.15 Score=55.51 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=27.7
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|++++|.|+.|+|||||+..|+..
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 368 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ 368 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4478999999999999999999999998753
No 413
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.48 E-value=0.16 Score=54.62 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++-|.+.
T Consensus 368 ~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34488999999999999999999999888664
No 414
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.47 E-value=0.16 Score=53.66 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~G 53 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLSG 53 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4558899999999999999999999998865
No 415
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=91.46 E-value=0.16 Score=55.80 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++.|++.
T Consensus 471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44488999999999999999999999988653
No 416
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=0.17 Score=53.65 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=29.8
Q ss_pred eeee-eeeeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 150 TIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 150 aID~-l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+++. -++|.+|.|++|.|++|+||||++..+-|.-
T Consensus 367 iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4443 3899999999999999999999999987754
No 417
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.40 E-value=0.092 Score=50.49 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=32.2
Q ss_pred ccceeeee-eeeeeccCceeeeecCCCCChhhhHHHHH
Q 015796 145 QTGISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 145 ~TGiraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
.-|++++| .=+.+-+|...+++||.|.||||+...|.
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlit 51 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLIT 51 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeec
Confidence 46899995 66999999999999999999999986653
No 418
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=91.39 E-value=0.17 Score=53.27 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 16 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~G 46 (491)
T PRK10982 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFG 46 (491)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3457889999999999999999999998864
No 419
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.37 E-value=0.14 Score=48.41 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=25.0
Q ss_pred eeee-eeeeeeccCceeeeecCCCCChhhhH
Q 015796 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIA 177 (400)
Q Consensus 148 iraI-D~l~pigkGqr~~I~g~~G~GKt~L~ 177 (400)
+.++ |.=+.+.+|+.++|.|++|+|||||+
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 3444 34488999999999999999999996
No 420
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=91.36 E-value=0.17 Score=54.22 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=28.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|+.|+|||||+..|+..
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45589999999999999999999999998743
No 421
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.36 E-value=0.17 Score=41.88 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=20.1
Q ss_pred eeeeecCCCCChhhhHHHHHHHh
Q 015796 162 KIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 162 r~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
|+.|+|++|+|||+|+..++...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999998887543
No 422
>PRK13949 shikimate kinase; Provisional
Probab=91.33 E-value=0.43 Score=43.11 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.0
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhc
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
.|+.|+|++|+||||+..++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999987654
No 423
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.33 E-value=0.19 Score=49.60 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=31.6
Q ss_pred ceeeee-eeeeeccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 147 GISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 147 GiraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+..++| .=+.+.+|+-.++.|+.|+|||||+.+|+...
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 356664 55899999999999999999999999986543
No 424
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=91.32 E-value=0.16 Score=54.26 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++.|++.
T Consensus 341 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 372 (547)
T PRK10522 341 PINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372 (547)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478889999999999999999999988754
No 425
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=91.31 E-value=0.19 Score=51.53 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=28.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 42 ~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl 73 (382)
T TIGR03415 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 56688999999999999999999999998753
No 426
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.31 E-value=1.5 Score=39.55 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.2
Q ss_pred ccCceeeeecCCCCChhhhHHHHHHH
Q 015796 158 ARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 158 gkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.+|..+.+.|.+|+||||++..+...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45677899999999999999888755
No 427
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=91.30 E-value=0.17 Score=53.73 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||++.|++.
T Consensus 340 ~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999998764
No 428
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.28 E-value=0.17 Score=47.01 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.6
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHh
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+|..++|.|++|+|||||+..|+..-
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999887643
No 429
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.27 E-value=0.18 Score=46.31 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.8
Q ss_pred ccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 158 gkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
-+|+-+.|.|++|+|||||+..+++.-
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999999987653
No 430
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.25 E-value=7 Score=37.08 Aligned_cols=35 Identities=11% Similarity=-0.054 Sum_probs=29.9
Q ss_pred eeeeeeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 148 ISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 148 iraID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
...-|.-+.+.+|+++.|.|+.|.|||+++..++.
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567778888999999999999999999988765
No 431
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=91.22 E-value=0.2 Score=53.11 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=27.6
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 29 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 59 (510)
T PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59 (510)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457889999999999999999999999864
No 432
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=91.18 E-value=0.18 Score=55.51 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++.|++.
T Consensus 483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44578889999999999999999999988754
No 433
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=91.18 E-value=0.17 Score=55.76 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++.|+..
T Consensus 497 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999988654
No 434
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=91.18 E-value=0.2 Score=53.08 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=29.6
Q ss_pred eeee-eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 149 raID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.+++ .=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl 333 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV 333 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3553 5578999999999999999999999998643
No 435
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.12 E-value=0.19 Score=45.14 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.5
Q ss_pred CceeeeecCCCCChhhhHHHHHHHh
Q 015796 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 160 Gqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
|+.+.|.|++|+|||||+..|+..-
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5678999999999999999887653
No 436
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.10 E-value=0.69 Score=43.50 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=24.4
Q ss_pred eccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 157 igkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.+|+-+.|.|++|+|||+++.+++.+.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5688899999999999999998887654
No 437
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.06 E-value=0.17 Score=45.47 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.7
Q ss_pred CceeeeecCCCCChhhhHHHHHHH
Q 015796 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 160 Gqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|+.+.|.|++|+|||||++.|++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 678999999999999999998764
No 438
>PRK08727 hypothetical protein; Validated
Probab=91.04 E-value=3.1 Score=39.50 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.5
Q ss_pred ceeeeecCCCCChhhhHHHHHHHh
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+-+.|.|++|+|||+|+..++.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999998887664
No 439
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=90.99 E-value=2.1 Score=44.22 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.5
Q ss_pred eeeeccCceeeeecCCCCChhhhHH
Q 015796 154 MNSIARGQKIPLFSAAGLPHNEIAA 178 (400)
Q Consensus 154 l~pigkGqr~~I~g~~G~GKt~L~~ 178 (400)
|+.-..||..+|-|.+|+|||++.-
T Consensus 4 FF~~~~G~TLLIKG~PGTGKTtfaL 28 (484)
T PF07088_consen 4 FFTQEPGQTLLIKGEPGTGKTTFAL 28 (484)
T ss_pred hhcCCCCcEEEEecCCCCCceeeeh
Confidence 5667889999999999999998743
No 440
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=90.95 E-value=0.18 Score=53.22 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=27.0
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+-+|++++|.|+.|+|||||++.|+.
T Consensus 272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G 301 (501)
T PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYG 301 (501)
T ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHcC
Confidence 347899999999999999999999999864
No 441
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.88 E-value=2.9 Score=37.63 Aligned_cols=87 Identities=20% Similarity=0.109 Sum_probs=50.9
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEE
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLF 238 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv 238 (400)
||.-+-|.|-+|+|||||+..+.+.-.. . ...+|.+=|.. +.+.|..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~-------~----------g~~~~~LDgD~------lR~~l~~---------- 47 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFA-------R----------GIKVYLLDGDN------LRHGLNA---------- 47 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHH-------T----------TS-EEEEEHHH------HCTTTTT----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-------c----------CCcEEEecCcc------hhhccCC----------
Confidence 4666889999999999998887654321 0 04566666541 1111110
Q ss_pred EeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhH
Q 015796 239 LNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSY 281 (400)
Q Consensus 239 ~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~ 281 (400)
.-.-+...|..-..-...+|.-|. ++|..|++-+-+.++=
T Consensus 48 --dl~fs~~dR~e~~rr~~~~A~ll~-~~G~ivIva~isp~~~ 87 (156)
T PF01583_consen 48 --DLGFSKEDREENIRRIAEVAKLLA-DQGIIVIVAFISPYRE 87 (156)
T ss_dssp --T--SSHHHHHHHHHHHHHHHHHHH-HTTSEEEEE----SHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHH-hCCCeEEEeeccCchH
Confidence 012244566666677778888888 8898888877776643
No 442
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=90.86 E-value=0.19 Score=53.97 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++.|++.
T Consensus 333 ~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~ 364 (569)
T PRK10789 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH 364 (569)
T ss_pred CeeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34478889999999999999999999988754
No 443
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=90.85 E-value=0.22 Score=54.21 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=30.5
Q ss_pred eeeee-eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 148 iraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.+++| .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl 373 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL 373 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 45664 4579999999999999999999999998743
No 444
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=90.83 E-value=0.2 Score=52.95 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=27.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 270 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 300 (501)
T PRK10762 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred cceEEEcCCcEEEEecCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999999864
No 445
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.80 E-value=2.3 Score=41.62 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=23.1
Q ss_pred eccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 157 igkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
..+++.+.+.|++|+||||++..++.+.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3556788999999999999998887654
No 446
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=90.78 E-value=0.21 Score=52.86 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=29.9
Q ss_pred eeeee-eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 148 iraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.++++ .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 310 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG 310 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 34554 458999999999999999999999999874
No 447
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=90.78 E-value=0.22 Score=52.60 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=28.6
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSG 52 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 44 3458899999999999999999999998864
No 448
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=90.76 E-value=0.19 Score=53.54 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++.+++.
T Consensus 336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 336 GISFRLQAGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45588889999999999999999999988654
No 449
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=90.72 E-value=0.23 Score=53.20 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++-|+..
T Consensus 358 ~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl 389 (576)
T TIGR02204 358 GLNLTVRPGETVALVGPSGAGKSTLFQLLLRF 389 (576)
T ss_pred ceeEEecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34488999999999999999999999888653
No 450
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=90.69 E-value=0.21 Score=52.53 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=27.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 278 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 278 NLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred eceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3447888999999999999999999999864
No 451
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.69 E-value=0.2 Score=45.71 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.5
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHh
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
.|+.+.|.|++|+|||||+.+|+...
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 37789999999999999999997653
No 452
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=90.68 E-value=0.23 Score=45.86 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=23.1
Q ss_pred eeccCceeeeecCCCCChhhhHHHHH
Q 015796 156 SIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 156 pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
.+.+|.++.|.|+.|+|||||+.+|+
T Consensus 25 ~l~~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 25 NLGSGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred EEcCCeEEEEECCCCCccHHHHHHHH
Confidence 34578999999999999999999987
No 453
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.67 E-value=2.4 Score=43.53 Aligned_cols=109 Identities=16% Similarity=0.169 Sum_probs=67.2
Q ss_pred eeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccchHHHHHHHHHhhhcCCCccEEEEEeCCC
Q 015796 164 PLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLAN 243 (400)
Q Consensus 164 ~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~g~l~~t~vv~~t~~ 243 (400)
-|+|.+|+|||.++.+.-+... .-.|++-|=|-......++.-|...+ +++
T Consensus 34 ~iyG~sgTGKT~~~r~~l~~~n-------------------~~~vw~n~~ecft~~~lle~IL~~~~----------~~d 84 (438)
T KOG2543|consen 34 HIYGHSGTGKTYLVRQLLRKLN-------------------LENVWLNCVECFTYAILLEKILNKSQ----------LAD 84 (438)
T ss_pred EEeccCCCchhHHHHHHHhhcC-------------------CcceeeehHHhccHHHHHHHHHHHhc----------cCC
Confidence 6899999999999888755421 13566666665444444444443322 344
Q ss_pred CCHHHHHhHHHHHHHHHHHhhh-----hCCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhccC
Q 015796 244 DPTIERIITPRIALTTAEYLAY-----ECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGR 318 (400)
Q Consensus 244 ~~~~~r~~a~~~a~tiAEyfr~-----d~G~~Vlli~Dsltr~a~A~reisl~lg~~p~~~gyp~~~~~~l~~l~ERag~ 318 (400)
.+...-......-++.-+-|+. ..++.|++++|+.- +.| .+++-+|..+.+|+|=+-.
T Consensus 85 ~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad----~lr-------------D~~a~ll~~l~~L~el~~~ 147 (438)
T KOG2543|consen 85 KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD----ALR-------------DMDAILLQCLFRLYELLNE 147 (438)
T ss_pred CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH----hhh-------------ccchHHHHHHHHHHHHhCC
Confidence 4433333223334444444442 34679999999954 443 4566789999999997643
No 454
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=0.79 Score=46.82 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=62.7
Q ss_pred eeeeeccCce---eeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccc---hHHHHHHHHHh
Q 015796 153 VMNSIARGQK---IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN---METAQFFKRDF 226 (400)
Q Consensus 153 ~l~pigkGqr---~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer---~e~~~~~~~~l 226 (400)
.|.|..+|.+ +.|.|++|+|||.++..+.++-.... .+..++|+=|=+- ......+.+.+
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~--------------~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS--------------ANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh--------------ccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 3666666665 78899999999999998887754211 1112677766654 34555555544
Q ss_pred hhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhH
Q 015796 227 EENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSY 281 (400)
Q Consensus 227 ~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~ 281 (400)
. ..|.........=..+-+.+. .+++.+++++|.+-..
T Consensus 98 ~----------------~~p~~g~~~~~~~~~l~~~~~-~~~~~~IvvLDEid~L 135 (366)
T COG1474 98 G----------------KVPLTGDSSLEILKRLYDNLS-KKGKTVIVILDEVDAL 135 (366)
T ss_pred C----------------CCCCCCCchHHHHHHHHHHHH-hcCCeEEEEEcchhhh
Confidence 3 233333333334445667777 7899999999998643
No 455
>PRK06217 hypothetical protein; Validated
Probab=90.54 E-value=0.22 Score=45.21 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.3
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhc
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
.||.|.|.+|+|||||..+|++..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999987754
No 456
>PRK14531 adenylate kinase; Provisional
Probab=90.52 E-value=0.23 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.0
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhc
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+|+.++|++|+||||+...|+..-+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999876643
No 457
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.51 E-value=0.23 Score=45.94 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.7
Q ss_pred ccCceeeeecCCCCChhhhHHHHHHH
Q 015796 158 ARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 158 gkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.++..++|.|++|+|||||+..|++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46678999999999999999998765
No 458
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=90.49 E-value=0.3 Score=45.12 Aligned_cols=33 Identities=0% Similarity=0.016 Sum_probs=27.8
Q ss_pred eeeeeeeeeccCce-eeeecCCCCChhhhHHHHH
Q 015796 149 STIDVMNSIARGQK-IPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 149 raID~l~pigkGqr-~~I~g~~G~GKt~L~~~i~ 181 (400)
..++.=+.+..|.| +.|.|+.|+|||||+.+|+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 45566677888865 9999999999999999876
No 459
>PRK14530 adenylate kinase; Provisional
Probab=90.45 E-value=0.24 Score=46.19 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.0
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHhc
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
.|-++.|+|++|+||||++..|++.-+
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999986643
No 460
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=90.44 E-value=0.24 Score=52.84 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||+.-|...
T Consensus 350 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 350 SISLVIEPGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CeeEEecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44478889999999999999999999888654
No 461
>PRK08233 hypothetical protein; Provisional
Probab=90.44 E-value=0.24 Score=44.25 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=21.3
Q ss_pred CceeeeecCCCCChhhhHHHHHHHh
Q 015796 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 160 Gqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.-++|.|++|+|||||+..|+..-
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568899999999999999988654
No 462
>PRK08116 hypothetical protein; Validated
Probab=90.42 E-value=0.77 Score=44.73 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.3
Q ss_pred eeeecCCCCChhhhHHHHHHHh
Q 015796 163 IPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
+.+.|++|+|||.|+..|++..
T Consensus 117 l~l~G~~GtGKThLa~aia~~l 138 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANEL 138 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999998887654
No 463
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.41 E-value=1.5 Score=41.33 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.1
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhc
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
..+-|+|++|+|||.|++.+++...
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~ 59 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQ 59 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999876643
No 464
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.39 E-value=0.24 Score=47.08 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=28.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHHhcc
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGL 186 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~ 186 (400)
|.-+.|-+++=..++||+||||||++..+.|-.+.
T Consensus 25 ~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl 59 (253)
T COG1117 25 DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL 59 (253)
T ss_pred cCceeccCCceEEEECCCCcCHHHHHHHHHhhccc
Confidence 44567888888999999999999999988775443
No 465
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.33 E-value=0.22 Score=53.59 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=28.0
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++-|++.
T Consensus 358 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999988764
No 466
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.26 E-value=0.61 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=21.4
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhc
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+-+.+.|++|+|||+|+..+++..+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999998887654
No 467
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.23 E-value=0.26 Score=47.48 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=27.4
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-||.=.+|.||+|+|||||+..|..+
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl 57 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLILGL 57 (263)
T ss_pred ceeeecCCcEEEEECCCCcCHHHHHHHHhcc
Confidence 4488999999999999999999999888644
No 468
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=90.20 E-value=3.8 Score=38.05 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.1
Q ss_pred eeeeecCCCCChhhhHHHHHHHhc
Q 015796 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 162 r~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
-+.+.|+.|+||||.+..++.+..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHh
Confidence 467899999999999988886653
No 469
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.17 E-value=0.24 Score=52.47 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=26.8
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.=+.+-+|++++|.|+.|+|||||+..|+.
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 347888999999999999999999999864
No 470
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=90.16 E-value=0.24 Score=41.07 Aligned_cols=21 Identities=0% Similarity=0.237 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhhhHHHHHH
Q 015796 162 KIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 162 r~~I~g~~G~GKt~L~~~i~~ 182 (400)
|++|+|.+|+|||||+..+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999999875
No 471
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=90.15 E-value=0.26 Score=52.86 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+.+|.+++|.|+.|+|||||+..|+.
T Consensus 342 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4458899999999999999999999999864
No 472
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=90.11 E-value=0.25 Score=52.49 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=29.1
Q ss_pred eeee-eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 149 raID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.+++ .=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3554 447899999999999999999999999864
No 473
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.06 E-value=0.32 Score=48.43 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=30.9
Q ss_pred ceeeee-eeeeeccCceeeeecCCCCChhhhHHHHH
Q 015796 147 GISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 147 GiraID-~l~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
.+.++| .=+.|-+|+..||+|.+|.|||||+..|.
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN 53 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN 53 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Confidence 467775 77999999999999999999999998763
No 474
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=90.06 E-value=0.24 Score=53.09 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=27.6
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
.=+.+-+|++++|.|++|+|||||+..|++.
T Consensus 361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478899999999999999999999998764
No 475
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=90.03 E-value=0.25 Score=53.37 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=27.7
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++.|++.
T Consensus 353 ~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHccC
Confidence 34477889999999999999999999988754
No 476
>PLN03073 ABC transporter F family; Provisional
Probab=89.99 E-value=0.26 Score=54.73 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=28.1
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 527 ~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl 558 (718)
T PLN03073 527 NLNFGIDLDSRIAMVGPNGIGKSTILKLISGE 558 (718)
T ss_pred ccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34478999999999999999999999998743
No 477
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=89.99 E-value=0.27 Score=54.38 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=28.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++-|.+.
T Consensus 499 ~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45588999999999999999999999988764
No 478
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.97 E-value=0.3 Score=52.29 Aligned_cols=32 Identities=9% Similarity=0.247 Sum_probs=27.9
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+.+|+.++|.|+.|+|||||+..|+..
T Consensus 42 nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred eeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34578899999999999999999999998643
No 479
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.93 E-value=5.9 Score=36.94 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=27.1
Q ss_pred eeeeeeeeccCceeeeecCCCCChhhhHHHHH
Q 015796 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 150 aID~l~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
.-|.-+....|.-.+|.|+.|.||||++++++
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34666777888999999999999999988875
No 480
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=89.93 E-value=1 Score=51.22 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=57.9
Q ss_pred eeeeeeeeccCceeeeecCCCCChhhhHHHHHHHhc-cchhhcccccccccCCCCCeEEEEEEeccc---hHHHHHHHHH
Q 015796 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG-LVKRLEKTDNLLEDGEEDNFAIVFAAMGVN---METAQFFKRD 225 (400)
Q Consensus 150 aID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~-~~~~~~~~d~~~~~~~~~~~~~V~~~iGer---~e~~~~~~~~ 225 (400)
+.+.|....- |-++|+|-.|+|||||+.++-+.-. ..+. .| ..+.+.+.+- ......+.+.
T Consensus 170 l~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~---Fd-----------~~iWV~VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 170 LWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNH---FD-----------GVIWVVVSKEFTTRKIQQTILER 234 (889)
T ss_pred HHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccchhccc---Cc-----------eEEEEEEcccccHHhHHHHHHHH
Confidence 3345555554 9999999999999999999865543 1111 22 7788888873 2333444443
Q ss_pred hhhcCCCccEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchh
Q 015796 226 FEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMS 279 (400)
Q Consensus 226 l~~~g~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dslt 279 (400)
+...+ . ..++... ...+.-+-+++. +++-+|++||+=
T Consensus 235 l~~~~---~------~~~~~~~-----~~~~~~i~~~L~---~krfllvLDDIW 271 (889)
T KOG4658|consen 235 LGLLD---E------EWEDKEE-----DELASKLLNLLE---GKRFLLVLDDIW 271 (889)
T ss_pred hccCC---c------ccchhhH-----HHHHHHHHHHhc---cCceEEEEeccc
Confidence 33211 0 0111001 334444555554 899999999983
No 481
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.90 E-value=0.65 Score=46.27 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.4
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhc
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
..+.+.|++|+|||+|+..+++..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhC
Confidence 4589999999999999998887654
No 482
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=89.89 E-value=0.18 Score=45.81 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=50.4
Q ss_pred eeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEEEeccch--HHHHHHHHHhhhcCCCccEEEEEe
Q 015796 163 IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM--ETAQFFKRDFEENGSMERVTLFLN 240 (400)
Q Consensus 163 ~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~--e~~~~~~~~l~~~g~l~~t~vv~~ 240 (400)
++|.||+++|||..+..++...+ .-.+|++.++.. |+.+.+.+.-++.+ .....+-
T Consensus 1 ilv~GG~rSGKS~~Ae~la~~~~-------------------~~~~YiAT~~~~D~em~~RI~~H~~~R~---~~w~tiE 58 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLALSFG-------------------GPVTYIATARPFDEEMRERIARHRQRRP---KGWITIE 58 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHTS---------------------SCEEEEESSHHHHHHHHHHHHHHHHHSS---TCEEEEE
T ss_pred CEEeCCCCcchHHHHHHHHHhcC-------------------CCcEEEeCCCCCCHHHHHHHHHHHHhCC---CCcEEEe
Confidence 57899999999999988873321 157999999984 55666655555443 2221111
Q ss_pred CCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhHHHHH
Q 015796 241 LANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADAL 285 (400)
Q Consensus 241 t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~ 285 (400)
. | ..+++.+. ....+=.+++|++|.|....
T Consensus 59 ~---~-----------~~l~~~~~-~~~~~~~vLlDclt~wl~n~ 88 (167)
T PF02283_consen 59 E---P-----------RDLAEALE-ELSPGDVVLLDCLTLWLANL 88 (167)
T ss_dssp ----S-----------S-GGGTS--TTS-T-EEEEE-HHHHHHHH
T ss_pred c---c-----------hhHHHHHH-HhccCCeEEEeCHHHHHHHH
Confidence 1 1 14445555 33323455669999997654
No 483
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=89.69 E-value=0.33 Score=43.88 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=26.2
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.-++|.+|.-+-+.||+|||||||+.-++-
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G 50 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIG 50 (213)
T ss_pred eeEEecCCcEEEEECCCCccHHHHHHHHHh
Confidence 457899999999999999999999876643
No 484
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=0.29 Score=52.28 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=70.4
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHHhccchh---hc-------------ccccccccCCCCCeEEEEEEeccc
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR---LE-------------KTDNLLEDGEEDNFAIVFAAMGVN 215 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~~~~~---~~-------------~~d~~~~~~~~~~~~~V~~~iGer 215 (400)
|.-+++-+||++.|.|.+|+|||||+..|......... ++ |.-..+.|++ +..-.-|.|.
T Consensus 339 ~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p----~lf~gTireN 414 (559)
T COG4988 339 DLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP----YLFAGTIREN 414 (559)
T ss_pred CceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCC----ccccccHHHH
Confidence 66689999999999999999999999887643321110 00 0001111111 2222223332
Q ss_pred ------hHHHHHHHHHhhhcCCC---c-----cEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhhhCCCeEEEEEcchhhH
Q 015796 216 ------METAQFFKRDFEENGSM---E-----RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSY 281 (400)
Q Consensus 216 ------~e~~~~~~~~l~~~g~l---~-----~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~ 281 (400)
...-+++.+.+++.|+. + .|.+=-+-..-|.+.+-|.+ +|+-|- .+ .+ ++++|.-|-+
T Consensus 415 i~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRla-----LARAll-~~-~~-l~llDEpTA~ 486 (559)
T COG4988 415 ILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLA-----LARALL-SP-AS-LLLLDEPTAH 486 (559)
T ss_pred hhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHH-----HHHHhc-CC-CC-EEEecCCccC
Confidence 11224455555554421 1 34455556677888877543 344454 32 33 5666999988
Q ss_pred HHHHHHH
Q 015796 282 ADALREV 288 (400)
Q Consensus 282 a~A~rei 288 (400)
-++..|-
T Consensus 487 LD~etE~ 493 (559)
T COG4988 487 LDAETEQ 493 (559)
T ss_pred CCHhHHH
Confidence 8888764
No 485
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=89.63 E-value=0.27 Score=52.60 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=27.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
|.=+.+-+|++++|.|++|+|||||+..|+.
T Consensus 340 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G 370 (552)
T TIGR03719 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370 (552)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3457889999999999999999999999864
No 486
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.63 E-value=0.68 Score=46.08 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=22.1
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHhc
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
.++-+.+.|++|+|||.|+..|++...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344588999999999999998887653
No 487
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=89.59 E-value=4 Score=38.63 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=19.9
Q ss_pred CceeeeecCCCCChhhhHHHHHHHh
Q 015796 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 160 Gqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
|.=..|.|++|+|||+|+.+++...
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH
Confidence 3445789999999999998887553
No 488
>PRK06893 DNA replication initiation factor; Validated
Probab=89.58 E-value=1.5 Score=41.38 Aligned_cols=24 Identities=0% Similarity=-0.009 Sum_probs=20.5
Q ss_pred eeeeecCCCCChhhhHHHHHHHhc
Q 015796 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 162 r~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
.+.++|++|+|||+|+..+++...
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999887653
No 489
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=89.52 E-value=0.29 Score=52.67 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=27.8
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~ 183 (400)
|.=+.+-+|++++|.|++|+|||||++-|...
T Consensus 353 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 353 DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999888654
No 490
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=89.43 E-value=0.32 Score=48.43 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=26.5
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHH
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~ 181 (400)
|.-+-|-.|+-+++.|++|+|||||+..||
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHh
Confidence 456677799999999999999999998885
No 491
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=89.42 E-value=0.34 Score=46.98 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=28.1
Q ss_pred ee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
++ |.=+.+-+|.-++|+||.|.|||||++.|..
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 44 4558899999999999999999999988753
No 492
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=89.40 E-value=0.33 Score=44.25 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.8
Q ss_pred cCceeeeecCCCCChhhhHHHHHHHh
Q 015796 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 159 kGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
.|..+.|.|++|+|||||+..++...
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 47889999999999999999987654
No 493
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=89.29 E-value=0.31 Score=51.25 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=26.4
Q ss_pred eeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 154 MNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 154 l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 296 (491)
T PRK10982 268 SFDLHKGEILGIAGLVGAKRTDIVETLFG 296 (491)
T ss_pred eEEEeCCcEEEEecCCCCCHHHHHHHHcC
Confidence 37899999999999999999999998864
No 494
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=0.72 Score=44.94 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=42.5
Q ss_pred ceeeeecCCCCChhhhHHHHHHHhccchhhcccccccccCCCCCeEEEEE------EeccchHHHHHHHHHhhhcCCCcc
Q 015796 161 QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFA------AMGVNMETAQFFKRDFEENGSMER 234 (400)
Q Consensus 161 qr~~I~g~~G~GKt~L~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~------~iGer~e~~~~~~~~l~~~g~l~~ 234 (400)
+-++++|++|+|||.|.+..++++.+.. +-|.. -.||..+++..+.+.-+++. -
T Consensus 190 rgvllygppg~gktml~kava~~t~a~f-----------------irvvgsefvqkylgegprmvrdvfrlakena---p 249 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTMLAKAVANHTTAAF-----------------IRVVGSEFVQKYLGEGPRMVRDVFRLAKENA---P 249 (408)
T ss_pred cceEEeCCCCCcHHHHHHHHhhccchhe-----------------eeeccHHHHHHHhccCcHHHHHHHHHHhccC---C
Confidence 3478999999999999999988876321 22221 15777666666554444432 4
Q ss_pred EEEEEeCCCCCHHHH
Q 015796 235 VTLFLNLANDPTIER 249 (400)
Q Consensus 235 t~vv~~t~~~~~~~r 249 (400)
++++...-|.-+-.|
T Consensus 250 siifideidaiatkr 264 (408)
T KOG0727|consen 250 SIIFIDEIDAIATKR 264 (408)
T ss_pred cEEEeehhhhHhhhh
Confidence 566655544444333
No 495
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.19 E-value=0.32 Score=52.15 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=28.4
Q ss_pred eeeeeccCceeeeecCCCCChhhhHHHHHHHhc
Q 015796 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 153 ~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
.=+.+-+|++++|.|++|+|||||++-+.+.-.
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 446699999999999999999999988877543
No 496
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.08 E-value=3.3 Score=45.75 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=30.2
Q ss_pred eeeeeeccCceeeeecCCCCChhhhHHHHHHHhc
Q 015796 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (400)
Q Consensus 152 D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~~~~ 185 (400)
+.+.|+-+-+-++|-|+.|+|||+|+..++++..
T Consensus 423 ~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~ 456 (952)
T KOG0735|consen 423 QELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS 456 (952)
T ss_pred hhcccccccccEEEeCCCCCCHhHHHHHHHHHhc
Confidence 5667788889999999999999999999998865
No 497
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=89.07 E-value=0.17 Score=45.72 Aligned_cols=33 Identities=12% Similarity=0.346 Sum_probs=27.8
Q ss_pred eeeeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
.+|-|....+++...+.|.+|+|||+|+..+..
T Consensus 25 g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 25 GIEELKELLKGKTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp THHHHHHHHTTSEEEEECSTTSSHHHHHHHHHT
T ss_pred CHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 456667778899999999999999999988754
No 498
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.05 E-value=0.46 Score=45.29 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=22.9
Q ss_pred ccCceeeeecCCCCChhhhHHHHHHHh
Q 015796 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (400)
Q Consensus 158 gkGqr~~I~g~~G~GKt~L~~~i~~~~ 184 (400)
....|+.|+|++|+||||+...+++.-
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344789999999999999999987654
No 499
>PRK13409 putative ATPase RIL; Provisional
Probab=89.02 E-value=0.32 Score=52.78 Aligned_cols=33 Identities=6% Similarity=0.117 Sum_probs=27.9
Q ss_pred eeeeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 150 aID~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
+++-+..+-+|+.++|.|+.|+|||||++.|+.
T Consensus 89 ~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 89 KLYGLPIPKEGKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred eEecCCcCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455455688999999999999999999998864
No 500
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=89.02 E-value=0.33 Score=46.86 Aligned_cols=34 Identities=9% Similarity=0.235 Sum_probs=28.7
Q ss_pred eee-eeeeeeccCceeeeecCCCCChhhhHHHHHH
Q 015796 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (400)
Q Consensus 149 raI-D~l~pigkGqr~~I~g~~G~GKt~L~~~i~~ 182 (400)
+++ |.=-.+-.|+++.|.|+.|+|||||++.++.
T Consensus 45 ~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~ 79 (257)
T COG1119 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79 (257)
T ss_pred eeccccceeecCCCcEEEECCCCCCHHHHHHHHhc
Confidence 444 4557889999999999999999999998863
Done!