BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015801
         (400 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
           Protein
          Length = 342

 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 156 LVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQ 215
           +VQ     KD +  IK     +  KS++ +T W G +  + F I A    L Q L  R +
Sbjct: 3   IVQIEQAPKDYISDIK----IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYK 56

Query: 216 DYIICIEMGIAAVVHLYV 233
             ++C        + +YV
Sbjct: 57  HPLLCCNFIDNTDLQIYV 74


>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
 pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
          Length = 349

 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 156 LVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQ 215
           +VQ     KD +  IK     +  KS++ +T W G +  + F I A    L Q L  R +
Sbjct: 3   IVQIEQAPKDYISDIK----IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYK 56

Query: 216 DYIICIEMGIAAVVHLYV 233
             ++C        + +YV
Sbjct: 57  HPLLCCNFIDNTDLQIYV 74


>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
 pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
 pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
 pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
          Length = 341

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 156 LVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQ 215
           +VQ     KD +  IK     +  KS++ +T W G +  + F I A    L Q L  R +
Sbjct: 3   IVQIEQAPKDYISDIK----IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYK 56

Query: 216 DYIICIEMGIAAVVHLYV 233
             ++C        + +YV
Sbjct: 57  HPLLCCNFIDNTDLQIYV 74


>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
 pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
 pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
          Length = 349

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 156 LVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQ 215
           +VQ     KD +  IK     +  KS++ +T W G +  + F I A    L Q L  R +
Sbjct: 3   IVQIEQAPKDYISDIK----IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYK 56

Query: 216 DYIICIEMGIAAVVHLYV 233
             ++C        + +YV
Sbjct: 57  HPLLCCNFIDNTDLQIYV 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,490,174
Number of Sequences: 62578
Number of extensions: 457396
Number of successful extensions: 763
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 4
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)