Query 015801
Match_columns 400
No_of_seqs 172 out of 482
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:42:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2641 Predicted seven transm 100.0 1E-66 2.2E-71 524.5 25.6 275 1-300 77-358 (386)
2 PF03619 Solute_trans_a: Organ 100.0 5.6E-66 1.2E-70 501.4 22.8 223 1-239 45-274 (274)
3 KOG2927 Membrane component of 66.1 3.8 8.2E-05 42.2 2.0 19 147-165 243-265 (372)
4 KOG2568 Predicted membrane pro 40.8 3.3E+02 0.0071 29.9 11.6 15 91-105 301-315 (518)
5 COG3399 Uncharacterized protei 23.2 5.6E+02 0.012 23.1 8.3 42 153-199 101-142 (148)
6 PRK01315 putative inner membra 22.2 3.8E+02 0.0083 27.5 8.0 84 109-192 11-129 (329)
7 COG3080 FrdD Fumarate reductas 20.6 3.5E+02 0.0076 23.8 6.1 88 103-190 21-112 (118)
8 TIGR02609 doc_partner putative 19.6 61 0.0013 25.8 1.3 63 270-333 6-71 (74)
9 TIGR02056 ChlG chlorophyll syn 19.0 9.2E+02 0.02 24.0 11.0 68 108-175 21-93 (306)
10 COG0474 MgtA Cation transport 18.1 3.2E+02 0.0069 31.8 7.1 97 93-197 694-794 (917)
No 1
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=100.00 E-value=1e-66 Score=524.50 Aligned_cols=275 Identities=40% Similarity=0.686 Sum_probs=247.0
Q ss_pred CcchhhHHhHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhhhccccCCCchhhhhccCCccccC
Q 015801 1 MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHP 80 (400)
Q Consensus 1 MVPIYAi~S~lSL~~P~~aiy~d~iRdcYEAfvIYsFf~LLi~yLGGe~~~i~~L~~~~~~~~~~p~l~~~~~~~~~~h~ 80 (400)
|+||||+.||+||+.|++++|++++||||||||||+|++||++|+|||++++..++++. .+.+|+
T Consensus 77 mvPIys~~S~vsl~~p~~~~~~~~vr~~Yeaf~ly~F~sLl~~ylGGe~~~v~~l~~~~---------------~~~~~~ 141 (386)
T KOG2641|consen 77 MVPIYSVASFVSLLVPRVAFYLDTVRECYEAFVLYVFLSLLFHYLGGEQNIVTELEGRL---------------IRVNHT 141 (386)
T ss_pred hhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHhccC---------------CcccCC
Confidence 89999999999999999999999999999999999999999999999999999887632 125789
Q ss_pred ccccccccccc-CChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHhccccCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 015801 81 CPLNCILRDWR-LGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQF 159 (400)
Q Consensus 81 ~P~~ccl~p~~-lg~~fl~~cK~gVLQYvIvKPl~ailaiIle~~GvY~eg~~s~~~aylyl~iI~niS~~lALY~Lv~F 159 (400)
+|+|||+||+. +++.++++||+||+||+|+||++++++++++++|.|++|++++ |+|+++++|+|+++|||||.+|
T Consensus 142 ~P~cc~~~p~~~~~~~~lr~~K~~vlQ~~ivkp~~~lv~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~f 218 (386)
T KOG2641|consen 142 PPFCCFFPPTVRLTPKFLRRCKQGVLQYPIVKPFLALVTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLF 218 (386)
T ss_pred CCceeccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHH
Confidence 99998888775 8999999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHhhhhcCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCc---HHHHHHHhhhhHHHHHHHHHHHHHhhcccC
Q 015801 160 YSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSL---AQELKTRIQDYIICIEMGIAAVVHLYVFPA 236 (400)
Q Consensus 160 Y~atke~L~p~kPl~KFl~IK~VVFltfwQ~viIaiL~~~Gvi~~~~---~~~i~~~iqd~LICiEM~i~AIlh~~aFp~ 236 (400)
|++++++|.|++|++||+|+|+|||++||||+++++|...|.+++.. .+..+.++||++||+||+++|++|+||||+
T Consensus 219 y~~~~~~L~py~p~~KF~~vk~ivf~~~wQg~vi~~l~~~g~~~~~~~~~~~~~~~~iQnfiiciEM~i~ai~~~~af~~ 298 (386)
T KOG2641|consen 219 YTVTKDELSPYQPVVKFLCVKLIVFLSFWQGIVLAILVKLGKIGPSYFDEVGTVAYGIQNFLICIEMLIAAIAHFYAFPA 298 (386)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999998543 357899999999999999999999999999
Q ss_pred ccccCC-CccccceeeeeecccCCCCCCccccccccccccccccccCccccc--ccCCcccceeEec
Q 015801 237 RPYKRG-ERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKR--LNFPQSVRDVVLG 300 (400)
Q Consensus 237 kpY~~~-~~~~~~~~~~~d~~~~~~~~d~~ev~~~~~~~~~~~~~~~~~~~~--~~~~~s~~d~~~~ 300 (400)
+||... ++.. |+.+.|.....+.++++.+|+.........-+++ ...++|.||+..+
T Consensus 299 ~~ya~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 358 (386)
T KOG2641|consen 299 APYALFDERSC-------DYRSVDMFSISSSLWDSLMPNDLCSDAIRNFSPTYQDYTPQSDQDALSA 358 (386)
T ss_pred chhcccccccc-------ccccccccccchHHHHhhcccCcccccccCCCcccccccccccCccccC
Confidence 999883 3321 6667777777788888888887776643333333 8889999998876
No 2
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=5.6e-66 Score=501.38 Aligned_cols=223 Identities=43% Similarity=0.830 Sum_probs=212.7
Q ss_pred CcchhhHHhHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhhhccccCCCchhhhhccCCccccC
Q 015801 1 MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHP 80 (400)
Q Consensus 1 MVPIYAi~S~lSL~~P~~aiy~d~iRdcYEAfvIYsFf~LLi~yLGGe~~~i~~L~~~~~~~~~~p~l~~~~~~~~~~h~ 80 (400)
|+||||++||+|+++|++++|+|++|||||||++|+|+.|+++|+|||++.++.+++ +++++|+
T Consensus 45 m~Piyai~S~~sl~~p~~~~~~~~ir~~Yea~~ly~F~~Ll~~y~gg~~~~~~~l~~----------------~~~~~~~ 108 (274)
T PF03619_consen 45 MVPIYAICSLLSLLFPRAAIYLDFIRDCYEAFVLYSFFSLLLNYLGGEEALVEVLSG----------------KPPIKHP 108 (274)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhc----------------CCCCCCC
Confidence 899999999999999999999999999999999999999999999999999888763 4455689
Q ss_pred ccc---ccccccccCChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHhccccCCccccccchhhHHHHHHHHHHHHHHHHH
Q 015801 81 CPL---NCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLV 157 (400)
Q Consensus 81 ~P~---~ccl~p~~lg~~fl~~cK~gVLQYvIvKPl~ailaiIle~~GvY~eg~~s~~~aylyl~iI~niS~~lALY~Lv 157 (400)
+|+ +||+|++++|++++++||+||+||+++||++++++++++++|.|+||+++++.+|+|+++++|+|+++|||||+
T Consensus 109 ~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvrpl~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~ 188 (274)
T PF03619_consen 109 WPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVRPLLSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLV 188 (274)
T ss_pred CcccccccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 46679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCc---H-HHHHHHhhhhHHHHHHHHHHHHHhhc
Q 015801 158 QFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSL---A-QELKTRIQDYIICIEMGIAAVVHLYV 233 (400)
Q Consensus 158 ~FY~atke~L~p~kPl~KFl~IK~VVFltfwQ~viIaiL~~~Gvi~~~~---~-~~i~~~iqd~LICiEM~i~AIlh~~a 233 (400)
+||+++|++|+|+||++||+|+|+|||++|||+++|++|.+.|++++.. + +++++++||+|+|+||+++|++|+||
T Consensus 189 ~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ii~iL~~~g~i~~~~~~~~~~~~~~~i~~~LicvEM~i~ai~~~~a 268 (274)
T PF03619_consen 189 IFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGFIISILASFGVIPCTPPWSSPEDIASGIQNFLICVEMFIFAILHRYA 268 (274)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998753 2 48999999999999999999999999
Q ss_pred ccCccc
Q 015801 234 FPARPY 239 (400)
Q Consensus 234 Fp~kpY 239 (400)
|||+||
T Consensus 269 f~~~~y 274 (274)
T PF03619_consen 269 FPYSPY 274 (274)
T ss_pred ccCCCC
Confidence 999998
No 3
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.08 E-value=3.8 Score=42.24 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=10.1
Q ss_pred HHHHHHHHH----HHHHHHHhhh
Q 015801 147 FSQTWALYC----LVQFYSVTKD 165 (400)
Q Consensus 147 iS~~lALY~----Lv~FY~atke 165 (400)
++++|+||. +++|-+.+.+
T Consensus 243 F~I~~il~~g~~g~W~FPNL~eD 265 (372)
T KOG2927|consen 243 FGITWILTGGKHGFWLFPNLTED 265 (372)
T ss_pred HHHHHHHhCCCCceEeccchhhh
Confidence 455566654 5555555544
No 4
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=40.85 E-value=3.3e+02 Score=29.86 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=12.6
Q ss_pred cCChhHHHHHHhhhh
Q 015801 91 RLGPEFYNAVKIGIV 105 (400)
Q Consensus 91 ~lg~~fl~~cK~gVL 105 (400)
++|...++.|++|++
T Consensus 301 ~Lg~~l~rv~~ig~~ 315 (518)
T KOG2568|consen 301 TLGGTLLRVCQIGVI 315 (518)
T ss_pred CcchHHHHHHHHhHH
Confidence 578889999999875
No 5
>COG3399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.23 E-value=5.6e+02 Score=23.14 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHc
Q 015801 153 LYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSI 199 (400)
Q Consensus 153 LY~Lv~FY~atke~L~p~kPl~KFl~IK~VVFltfwQ~viIaiL~~~ 199 (400)
.+.|+.|-.+.+-..+.-+|++||+-- +.|--+++|.+|.+.
T Consensus 101 if~Lv~Fsl~c~f~~kk~npvGkyIHp-----vvft~~~lIviLAK~ 142 (148)
T COG3399 101 IFLLVHFSLACVFMAKKTNPVGKYIHP-----VVFTHMLLIVILAKA 142 (148)
T ss_pred HHHHHHHHHHHHHHHhccCCccceehH-----HHHHHHHHHHHHHHH
Confidence 345777777777778888999998753 223345667777654
No 6
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=22.16 E-value=3.8e+02 Score=27.55 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHhccccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-----cC---------------
Q 015801 109 ILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDK-----LE--------------- 168 (400)
Q Consensus 109 IvKPl~ailaiIle~~GvY~eg~~s~~~aylyl~iI~niS~~lALY~Lv~FY~atke~-----L~--------------- 168 (400)
+++|+..+++.++..+..--..-+....+..|...|..+.+.+=+-.+=++.++.+.. |+
T Consensus 11 i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~~~~ 90 (329)
T PRK01315 11 IMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRE 90 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhHHH
Confidence 6889888888887765322222234445556655555544444332233333333220 11
Q ss_pred -------------CCCCcchhhh--HHHHHHHHHHHHHH
Q 015801 169 -------------PIKPLAKFLT--FKSIVFLTWWQGII 192 (400)
Q Consensus 169 -------------p~kPl~KFl~--IK~VVFltfwQ~vi 192 (400)
.++|+.-++- +++-||+.+++.+-
T Consensus 91 ~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~ 129 (329)
T PRK01315 91 RMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLD 129 (329)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 5678887776 68899999988664
No 7
>COG3080 FrdD Fumarate reductase subunit D [Energy production and conversion]
Probab=20.57 E-value=3.5e+02 Score=23.77 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=54.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhccccCCccc---cccchhhH-HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhhh
Q 015801 103 GIVQYMILKMICALLAMILQTFGVYGEGKFE---WKYGYPYL-AVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLT 178 (400)
Q Consensus 103 gVLQYvIvKPl~ailaiIle~~GvY~eg~~s---~~~aylyl-~iI~niS~~lALY~Lv~FY~atke~L~p~kPl~KFl~ 178 (400)
|-.=.+++-|++.++-=++-.+|..+..+.+ ..+++-++ .++..+-+.++|||-.---+---.+|+=+.|.+|+.|
T Consensus 21 Gg~vsAiiaPV~iLl~GillPlG~~d~~~lse~llaf~~s~Igkl~llvl~vlplw~a~HRihHgmhdlk~h~pag~~~f 100 (118)
T COG3080 21 GGMVSAIIAPVLILLVGILLPLGLFDADALSERLLAFAQSPIGKLFLLVLIVLPLWCALHRIHHGMHDLKIHVPAGKWVF 100 (118)
T ss_pred CceehHHHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeeeeee
Confidence 4445678889888877777788999876654 12223233 2333344556666654332222235666779999999
Q ss_pred HHHHHHHHHHHH
Q 015801 179 FKSIVFLTWWQG 190 (400)
Q Consensus 179 IK~VVFltfwQ~ 190 (400)
.-+-+..|-|-.
T Consensus 101 YGlA~i~sv~~~ 112 (118)
T COG3080 101 YGLAVILTVVAL 112 (118)
T ss_pred eHHHHHHHHHHH
Confidence 877776665544
No 8
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=19.63 E-value=61 Score=25.76 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=33.3
Q ss_pred ccccccccccccCcccccccCCcccceeEecCCceeeeccee--ccccccc-hhhhhhhhhhhhhhh
Q 015801 270 SERTTKMRIARHDEREKRLNFPQSVRDVVLGSGEIIVDDMKY--TVSHVVE-PVERGIAKINKTFHQ 333 (400)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~~~g~~~~~d~~~--t~~~~~~-p~~~~~~~~~~~~~~ 333 (400)
.|...-.++|..=.+.-+...-+.| ++...+|..++.=++- +....+. .+++...+-.++|+.
T Consensus 6 ~GNS~~vtIPk~i~~~lgl~~Gd~v-~v~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~ 71 (74)
T TIGR02609 6 VGNSLVVTLPKEVLESLGLKEGDTL-YVDEEEGGLKLKRFDEGKELEKKMQMAVERAMSKYDEALKE 71 (74)
T ss_pred ECCeeEEEECHHHHHHcCcCCCCEE-EEEEECCEEEEEECCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555432232223333555 7888888888876664 3333333 455555555555544
No 9
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=18.96 E-value=9.2e+02 Score=24.01 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHhccccCCccccccch----hhHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCCCcch
Q 015801 108 MILKMICALLAMILQTFGVYGEGKFEWKYGY----PYLAVVLNFSQTWALYCLVQFYSVTKDK-LEPIKPLAK 175 (400)
Q Consensus 108 vIvKPl~ailaiIle~~GvY~eg~~s~~~ay----lyl~iI~niS~~lALY~Lv~FY~atke~-L~p~kPl~K 175 (400)
-+.||-+.+.+++.-..|..-.|++++.... +...++..+....+-+.+.-.+-.=.|. .+|.||+++
T Consensus 21 ~l~RP~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~ 93 (306)
T TIGR02056 21 QLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPS 93 (306)
T ss_pred HHcChHhhHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCC
Confidence 3456666655555444443334555543211 1222233344455567777777653333 567888877
No 10
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=18.14 E-value=3.2e+02 Score=31.79 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=57.9
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHH-HHHHHHhccccCCccccccchhhHHHHHHHHHHHHHHHHHHH---HHHhhhhcC
Q 015801 93 GPEFYNAVKIGIVQYMILKMICALL-AMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQF---YSVTKDKLE 168 (400)
Q Consensus 93 g~~fl~~cK~gVLQYvIvKPl~ail-aiIle~~GvY~eg~~s~~~aylyl~iI~niS~~lALY~Lv~F---Y~atke~L~ 168 (400)
||.-|.+++. .+||.+.+-+..++ .++...++.. ..-.....+..+|.+..++--.+|..+ +..++..
T Consensus 694 GR~~~~ni~k-~i~~~l~~n~~~~~~~~~~~~~~~~-----~~p~~~~qll~inll~d~~pa~~L~~~~~~~~~m~~~-- 765 (917)
T COG0474 694 GRRVYVNIKK-FILYLLSKNVGEVLTLLIYSLFNLF-----FLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRP-- 765 (917)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHhhhhhheeecCCCcccccccC--
Confidence 6666777765 45777777777444 4444455444 111233444455555555555566555 3333332
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 015801 169 PIKPLAKFLTFKSIVFLTWWQGIIVAFLF 197 (400)
Q Consensus 169 p~kPl~KFl~IK~VVFltfwQ~viIaiL~ 197 (400)
|.+|..+.+.-+.+.-+..++++.++++.
T Consensus 766 ~~~p~~~i~~~~~~~~~i~~~~~~~~i~~ 794 (917)
T COG0474 766 PRGPEEGLFNRKIFWRFILIIGLLSAILF 794 (917)
T ss_pred CCCccccccchhHHHHHHHHHHHHHHHHH
Confidence 78899988988888887777776666555
Done!