Query 015801
Match_columns 400
No_of_seqs 172 out of 482
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 18:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_D Fumarate reductase 13 k 12.1 6.5E+02 0.022 21.2 8.2 78 102-180 20-103 (119)
2 1z0k_B FYVE-finger-containing 11.1 45 0.0015 25.7 -0.4 24 349-374 4-27 (69)
3 1zl8_A LIN-7; heterodimer, alp 10.7 1.1E+02 0.0039 22.2 1.7 13 19-31 39-51 (53)
4 1wrg_A LH-1, light-harvesting 9.5 1.9E+02 0.0063 21.3 2.5 21 223-243 31-51 (55)
5 1nkz_B Light-harvesting protei 8.2 1.1E+02 0.0038 21.2 0.7 18 223-240 23-40 (41)
6 1lgh_B LH II, B800/850, light 7.7 1.2E+02 0.0041 21.4 0.7 17 223-239 28-44 (45)
7 1dx7_A Light-harvesting protei 7.3 1.5E+02 0.005 21.2 1.0 16 224-239 32-47 (48)
8 3hzq_A Large-conductance mecha 7.2 9.7E+02 0.033 19.9 6.3 31 134-164 81-111 (114)
9 3v5w_G G gamma-I, guanine nucl 7.0 1.8E+02 0.0062 22.7 1.6 19 368-386 52-70 (77)
10 3d8m_A BPP, baseplate protein, 6.7 3E+02 0.01 24.5 3.0 47 318-366 9-55 (165)
No 1
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=12.05 E-value=6.5e+02 Score=21.15 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=53.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhccccCCccccccc----hhh-HHHHHHHHHHHHHHHHH-HHHHHhhhhcCCCCCcch
Q 015801 102 IGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYG----YPY-LAVVLNFSQTWALYCLV-QFYSVTKDKLEPIKPLAK 175 (400)
Q Consensus 102 ~gVLQYvIvKPl~ailaiIle~~GvY~eg~~s~~~a----yly-l~iI~niS~~lALY~Lv-~FY~atke~L~p~kPl~K 175 (400)
-|=.=.+++-|++-++.=|+-.+|..+.+..+.... .-| -.++....+.+-|||=. .+|+.++| |+=+-|..|
T Consensus 20 AGGm~sAl~~PvliLl~GillPlG~~~~~~lsY~~~~aFa~s~ig~l~ll~~i~lplWh~~HRihh~lHD-lkih~~~~~ 98 (119)
T 1kf6_D 20 AGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHD-LKIHVPAGK 98 (119)
T ss_dssp HHHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTHH
T ss_pred cchHHHHHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhh-heeecCcch
Confidence 344456777888777777777889987665533221 112 24455556667788777 89999988 888889999
Q ss_pred hhhHH
Q 015801 176 FLTFK 180 (400)
Q Consensus 176 Fl~IK 180 (400)
++|.-
T Consensus 99 ~~~Yg 103 (119)
T 1kf6_D 99 WVFYG 103 (119)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 98874
No 2
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=11.06 E-value=45 Score=25.68 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=15.0
Q ss_pred cCCCCccccCCccccccccccCCCCC
Q 015801 349 SKDDSYLIPLNSWTREFSEVQDHIPE 374 (400)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (400)
++||.|..+.. .-.++..+|||++
T Consensus 4 ~~~~gW~~~~~--~~~~~~~~dPL~E 27 (69)
T 1z0k_B 4 GSAEGWLPLSG--GQGQSEDSDPLLQ 27 (69)
T ss_dssp ---CCBCCCSS--TTCSCCCSSHHHH
T ss_pred ccCCCCCcccc--cccccccCCcHHH
Confidence 57899974444 4556788899875
No 3
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=10.70 E-value=1.1e+02 Score=22.18 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHH
Q 015801 19 AFNCEVIRDCYEA 31 (400)
Q Consensus 19 aiy~d~iRdcYEA 31 (400)
|-+|..+|++||-
T Consensus 39 SdF~~aVREVYEh 51 (53)
T 1zl8_A 39 SEFFGAVREVYET 51 (53)
T ss_dssp CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4689999999995
No 4
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=9.54 E-value=1.9e+02 Score=21.27 Aligned_cols=21 Identities=43% Similarity=0.746 Sum_probs=17.5
Q ss_pred HHHHHHHHhhcccCccccCCC
Q 015801 223 MGIAAVVHLYVFPARPYKRGE 243 (400)
Q Consensus 223 M~i~AIlh~~aFp~kpY~~~~ 243 (400)
..++.++|.-++-++|+-++.
T Consensus 31 ~~iAvvAH~L~~~wrPWl~g~ 51 (55)
T 1wrg_A 31 FGVAAFAHLLVWIWRPWVPGP 51 (55)
T ss_dssp HHHHHHHHHHHSSCSSSSCCS
T ss_pred HHHHHHHHHHHHHhcccCCCc
Confidence 456788999999999998753
No 5
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=8.20 E-value=1.1e+02 Score=21.20 Aligned_cols=18 Identities=39% Similarity=0.818 Sum_probs=14.9
Q ss_pred HHHHHHHHhhcccCcccc
Q 015801 223 MGIAAVVHLYVFPARPYK 240 (400)
Q Consensus 223 M~i~AIlh~~aFp~kpY~ 240 (400)
..++.++|.-+|-++|+-
T Consensus 23 ~~iA~vAH~l~w~wrPWl 40 (41)
T 1nkz_B 23 LGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 457888999999999974
No 6
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=7.66 E-value=1.2e+02 Score=21.43 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.2
Q ss_pred HHHHHHHHhhcccCccc
Q 015801 223 MGIAAVVHLYVFPARPY 239 (400)
Q Consensus 223 M~i~AIlh~~aFp~kpY 239 (400)
..++.++|.-+|-++|+
T Consensus 28 ~~iA~vAH~L~~~wrPW 44 (45)
T 1lgh_B 28 IILAAVAHVLVWVWKPW 44 (45)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 45678899999999996
No 7
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=7.26 E-value=1.5e+02 Score=21.24 Aligned_cols=16 Identities=44% Similarity=0.733 Sum_probs=13.8
Q ss_pred HHHHHHHhhcccCccc
Q 015801 224 GIAAVVHLYVFPARPY 239 (400)
Q Consensus 224 ~i~AIlh~~aFp~kpY 239 (400)
.++.++|.-+|-++|+
T Consensus 32 ~iA~vAH~l~w~wrPW 47 (48)
T 1dx7_A 32 AVAIVAHLAVYIWRPW 47 (48)
T ss_dssp THHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4678899999999996
No 8
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=7.25 E-value=9.7e+02 Score=19.85 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=22.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 015801 134 WKYGYPYLAVVLNFSQTWALYCLVQFYSVTK 164 (400)
Q Consensus 134 ~~~aylyl~iI~niS~~lALY~Lv~FY~atk 164 (400)
..+|-.--++++.+-+.+++|.++..++.++
T Consensus 81 i~yG~Fi~avInFlIiA~viF~~vk~~nkl~ 111 (114)
T 3hzq_A 81 IKYGLFIQSVIDFIIIAFALFIFVKIANTLM 111 (114)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555567777778889999998877664
No 9
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=7.01 E-value=1.8e+02 Score=22.73 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=11.5
Q ss_pred ccCCCCCCccccccccccc
Q 015801 368 VQDHIPEGSFSDSSISNGK 386 (400)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~ 386 (400)
-+|||+.|--++.-..|-|
T Consensus 52 ~~DpLl~Gvp~~~NPFkeK 70 (77)
T 3v5w_G 52 KEDPLLTPVPASENPFREK 70 (77)
T ss_dssp GGCTTTSCCCGGGCTTTTC
T ss_pred CCCCCcCCCCCCCCCCCCC
Confidence 4688888765554544443
No 10
>3d8m_A BPP, baseplate protein, receptor binding protein; lactococcal phage P2, lactococcal phage TP901-1, receptor BI protein; 3.35A {Lactococcus phage tp901-1}
Probab=6.69 E-value=3e+02 Score=24.46 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=27.1
Q ss_pred chhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCccccCCccccccc
Q 015801 318 EPVERGIAKINKTFHQISENVKRHEKERKRSSKDDSYLIPLNSWTREFS 366 (400)
Q Consensus 318 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (400)
+-+|.|-.-||+.|-.|...+++-+. -..+|+|.+ ++----|+..+.
T Consensus 9 rgm~ngae~i~~n~~~~~~e~~~~~~-~v~ktgde~-i~G~KtftgdI~ 55 (165)
T 3d8m_A 9 RGMKNGAETINDDLEAINSELTSGGN-VVHKTGDET-IAGKKTFTGNVE 55 (165)
T ss_dssp --------CTTHHHHHHHHHTTSSTT-CCCSSSCCC-CCSCCCCCSCCC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCc-eEEeccccc-ccccccccCceE
Confidence 45677888899999999998888766 555577766 444444555444
Done!