Query 015801
Match_columns 400
No_of_seqs 172 out of 482
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 18:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015801.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015801hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b5ea2 c.47.1.2 (A:142-239) P 32.1 5.4 0.00039 30.7 0.5 20 320-339 23-44 (98)
2 d1ijdb_ f.3.1.1 (B:) Light-har 16.9 23 0.0017 22.7 1.2 17 223-239 24-40 (40)
3 d1zl8a1 a.194.1.1 (A:4-53) Lin 14.9 34 0.0025 23.0 1.7 14 18-31 35-48 (50)
4 d1nkzb_ f.3.1.1 (B:) Light-har 13.6 26 0.0019 22.6 0.7 18 223-240 23-40 (41)
5 d1y74a1 a.194.1.1 (A:17-73) Li 13.4 39 0.0028 23.2 1.7 15 18-32 36-50 (57)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 10.4 1.5E+02 0.011 16.9 3.3 17 149-165 9-25 (26)
7 d1b0ua_ c.37.1.12 (A:) ATP-bin 8.0 72 0.0052 27.6 1.9 30 294-323 5-40 (258)
8 d1ji0a_ c.37.1.12 (A:) Branche 6.6 92 0.0067 26.4 1.9 30 294-323 9-44 (240)
9 d1lghb_ f.3.1.1 (B:) Light-har 5.7 90 0.0066 20.2 0.9 17 223-239 26-42 (43)
10 d1jo5a_ f.3.1.1 (A:) Light-har 5.2 90 0.0066 20.7 0.7 17 223-239 31-47 (48)
No 1
>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.10 E-value=5.4 Score=30.70 Aligned_cols=20 Identities=30% Similarity=0.404 Sum_probs=15.8
Q ss_pred hhhhh--hhhhhhhhhhhhhhh
Q 015801 320 VERGI--AKINKTFHQISENVK 339 (400)
Q Consensus 320 ~~~~~--~~~~~~~~~~~~~~~ 339 (400)
|..|+ ..+|||||++..+..
T Consensus 23 V~~Gv~d~~fNeTF~~~A~~l~ 44 (98)
T d2b5ea2 23 VQSGKIDADFNATFYSMANKHF 44 (98)
T ss_dssp EEEESCCHHHHHHHHHHHHHTT
T ss_pred EeCCccccchhHHHHHHHHHhh
Confidence 45677 589999999987664
No 2
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=16.95 E-value=23 Score=22.74 Aligned_cols=17 Identities=35% Similarity=0.725 Sum_probs=14.1
Q ss_pred HHHHHHHHhhcccCccc
Q 015801 223 MGIAAVVHLYVFPARPY 239 (400)
Q Consensus 223 M~i~AIlh~~aFp~kpY 239 (400)
-+++.++|.-+|.|+|+
T Consensus 24 ~~iA~~AH~La~~~tPW 40 (40)
T d1ijdb_ 24 LVIAAIAHFLAFTLTPW 40 (40)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 35678889999999986
No 3
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=14.88 E-value=34 Score=22.97 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHH
Q 015801 18 AAFNCEVIRDCYEA 31 (400)
Q Consensus 18 ~aiy~d~iRdcYEA 31 (400)
-|-+|+.+|++||-
T Consensus 35 qSdF~~avREVYe~ 48 (50)
T d1zl8a1 35 QSEFFGAVREVYET 48 (50)
T ss_dssp SCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 35689999999995
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=13.58 E-value=26 Score=22.61 Aligned_cols=18 Identities=39% Similarity=0.818 Sum_probs=14.9
Q ss_pred HHHHHHHHhhcccCcccc
Q 015801 223 MGIAAVVHLYVFPARPYK 240 (400)
Q Consensus 223 M~i~AIlh~~aFp~kpY~ 240 (400)
-+++.++|.-+|.|+|+-
T Consensus 23 ~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 23 LGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 356788999999999984
No 5
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.35 E-value=39 Score=23.23 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHH
Q 015801 18 AAFNCEVIRDCYEAF 32 (400)
Q Consensus 18 ~aiy~d~iRdcYEAf 32 (400)
-|-+|+.+|++||-.
T Consensus 36 qSdF~~avREVYehv 50 (57)
T d1y74a1 36 QSRFCSAIREVYEQL 50 (57)
T ss_dssp HSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456899999999953
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.45 E-value=1.5e+02 Score=16.95 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 015801 149 QTWALYCLVQFYSVTKD 165 (400)
Q Consensus 149 ~~lALY~Lv~FY~atke 165 (400)
..|+.++|+++|..+.+
T Consensus 9 ~fw~ffalli~ylqten 25 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 46788889999987643
No 7
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=7.98 E-value=72 Score=27.57 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=22.1
Q ss_pred cceeEec-CCceeeecceecccc-----ccchhhhh
Q 015801 294 VRDVVLG-SGEIIVDDMKYTVSH-----VVEPVERG 323 (400)
Q Consensus 294 ~~d~~~~-~g~~~~~d~~~t~~~-----~~~p~~~~ 323 (400)
|+|+... |+..|++||.|+|.+ .|+|--.|
T Consensus 5 v~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsG 40 (258)
T d1b0ua_ 5 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSG 40 (258)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSS
T ss_pred EEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCc
Confidence 5566543 788899999999987 36676555
No 8
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=6.58 E-value=92 Score=26.44 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=20.6
Q ss_pred cceeEec-CCceeeecceeccccc-----cchhhhh
Q 015801 294 VRDVVLG-SGEIIVDDMKYTVSHV-----VEPVERG 323 (400)
Q Consensus 294 ~~d~~~~-~g~~~~~d~~~t~~~~-----~~p~~~~ 323 (400)
++|+-.. ||..+++||.|+|.+- ++|--.|
T Consensus 9 v~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaG 44 (240)
T d1ji0a_ 9 VQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAG 44 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSS
T ss_pred EeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCc
Confidence 4454443 7889999999999763 4564443
No 9
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.67 E-value=90 Score=20.22 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=13.9
Q ss_pred HHHHHHHHhhcccCccc
Q 015801 223 MGIAAVVHLYVFPARPY 239 (400)
Q Consensus 223 M~i~AIlh~~aFp~kpY 239 (400)
..++.++|.-++-++|+
T Consensus 26 ~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 26 IILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 45678889999999986
No 10
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.23 E-value=90 Score=20.68 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=13.7
Q ss_pred HHHHHHHHhhcccCccc
Q 015801 223 MGIAAVVHLYVFPARPY 239 (400)
Q Consensus 223 M~i~AIlh~~aFp~kpY 239 (400)
-.++.++|.-+|-++|+
T Consensus 31 ~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 31 SAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 35677889999999886
Done!