BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015802
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 376 bits (966), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/380 (50%), Positives = 248/380 (65%), Gaps = 3/380 (0%)
Query: 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWI 72
LG+D STQ +K +D+ LN+ E + FD +LP + T+ GV+ + + SP LMW+
Sbjct: 13 LGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVH-KDGLTVTSPVLMWV 71
Query: 73 EAXXXXXXXXXXXXXX-XXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAF 131
+A V A+SG+GQQHGS+YWK G+ L+SL P L QL D F
Sbjct: 72 QALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCF 131
Query: 132 STKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDD 191
S + PVWMDSSTTAQCR++E AVGGA LS LTGSR YERFTG QI K++Q P Y
Sbjct: 132 SISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSH 191
Query: 192 TERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLA 251
TERIS+VSSF ASL +G+Y+ ID +D +GMNL+ I+ +VWS+ L A AP LEEKL
Sbjct: 192 TERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPV 251
Query: 252 PAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGI 311
P+ +V G I+ Y+V+R+ F C VV ++GDNP SLAG+ L GD+A+SLGTSDT+F
Sbjct: 252 PSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLE-EGDIAVSLGTSDTLFLW 310
Query: 312 TDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPL 371
+P P LEGH+F NPVD++ YM +L +KN SL RE +RN +SW F+K LQ T
Sbjct: 311 LQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMG 370
Query: 372 NGGKMGFYYKEHEILPPLPG 391
NGG +GFY+ EI P + G
Sbjct: 371 NGGNLGFYFDVMEITPEIIG 390
>pdb|4BC2|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC3|A Chain A, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|B Chain B, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|C Chain C, Crystal Structure Of Human D-xylulokinase
pdb|4BC4|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
Length = 538
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 244/380 (64%), Gaps = 3/380 (0%)
Query: 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWI 72
LG+D STQ +K +D+ LN+ E + FD +LP + T+ GV+ + + SP L W+
Sbjct: 13 LGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVH-KDGLTVTSPVLXWV 71
Query: 73 EAXXXXXXXXXXXXXX-XXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAF 131
+A V A+SG+GQQHGS+YWK G+ L+SL P L QL D F
Sbjct: 72 QALDIILEKXKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCF 131
Query: 132 STKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDD 191
S + PVW DSSTTAQCR++E AVGGA LS LTGSR YERFTG QI K++Q P Y
Sbjct: 132 SISDCPVWXDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSH 191
Query: 192 TERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLA 251
TERIS+VSSF ASL +G+Y+ ID +D +G NL+ I+ +VWS+ L A AP LEEKL
Sbjct: 192 TERISLVSSFAASLFLGSYSPIDYSDGSGXNLLQIQDKVWSQACLGACAPHLEEKLSPPV 251
Query: 252 PAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGI 311
P+ +V G I+ Y+V+R+ F C VV ++GDNP SLAG L GD+A+SLGTSDT+F
Sbjct: 252 PSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGXRLE-EGDIAVSLGTSDTLFLW 310
Query: 312 TDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPL 371
+P P LEGH+F NPVD++ Y +L +KN SL RE +RN +SW F+K LQ T
Sbjct: 311 LQEPXPALEGHIFCNPVDSQHYXALLCFKNGSLXREKIRNESVSRSWSDFSKALQSTEXG 370
Query: 372 NGGKMGFYYKEHEILPPLPG 391
NGG +GFY+ EI P + G
Sbjct: 371 NGGNLGFYFDVXEITPEIIG 390
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/335 (19%), Positives = 139/335 (41%), Gaps = 41/335 (12%)
Query: 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLM 70
+++G D T +K +L+ +VA++ + PH + +DP
Sbjct: 1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSE---QDPEQ---------- 47
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
W +A V A+ +GQ HG+ LD ++ ++
Sbjct: 48 WWQATDRAMKALGDQHSLQDVKALGIAGQMHGATL-----------LDAQQRVL------ 90
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYD 190
+ + +W D +C +E V + +TG+ FT P++ + + +P ++
Sbjct: 91 ---RPAILWNDGRCAQECTLLEARVP---QSRVITGNLMMPGFTAPKLLWVQRHEPEIFR 144
Query: 191 DTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKL 250
+++ + ++ + G +A D +DAAG +D+ +R WS ++L+A S +++ L
Sbjct: 145 QIDKVLLPKDYLRLRMTGEFAS-DMSDAAGTMWLDVAKRDWSDVMLQACDLS-RDQMPAL 202
Query: 251 APAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFG 310
+ G + P + + VV GDN G+ + + +SLGTS F
Sbjct: 203 YEGSEITGALLPEVAKAWGM-ATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFA 261
Query: 311 ITDD--PEPRLEGHVFPNPVDTKGYMIMLVYKNAS 343
+++ +P H F + + + +++ ++ AS
Sbjct: 262 VSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAAS 296
>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
Bifidobacterium Adolescentis
Length = 515
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 137/376 (36%), Gaps = 88/376 (23%)
Query: 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTL 69
+L G D+STQS K V D+ E ++F G + P NG V P+
Sbjct: 5 TLVAGVDTSTQSCKVRVTDAETG----ELVRF-----------GQAKHP--NGTSVDPSY 47
Query: 70 MWIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGD 129
W V+A++ GQQHG V ++D G+
Sbjct: 48 WW----SAFQEAAEQAGGLDDVSALAVGGQQHGXV------------------ILDNQGN 85
Query: 130 AFSTKESPVWMDSSTTAQCREIEKAVG---------------GALELSKLTGSRGYERFT 174
+++ +W D+S+ Q + + +G G K GS +T
Sbjct: 86 VI--RDAXLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYT 143
Query: 175 GPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACI-------------DETDAAGM 221
++ + + +P I + ++ S I Y + D +DA+G
Sbjct: 144 LTKVAWVAENEPENVKKIAAICLPHDWL-SWRIAGYGPVAEGEDAHLEALFTDRSDASGT 202
Query: 222 NLMDIRQRVWSKIVLEATAPSLEEKLG-KLAPAHAVAGCI---------APYFVERFHFN 271
D + + ++ A LE G K A +HA A + AP +
Sbjct: 203 IYYDAASNEYRRDLI---AXVLEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAG 259
Query: 272 KN----CLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHVFPNP 327
KN CL+ GDN + GL + GD++ISLGTS I+++P L G V
Sbjct: 260 KNVEGGCLLAPGGGDNAXASLGLGXAV-GDVSISLGTSGVAAAISENPTYDLTGAVSGFA 318
Query: 328 VDTKGYMIMLVYKNAS 343
T Y+ + N S
Sbjct: 319 DCTGHYLPLACTINGS 334
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 85/200 (42%), Gaps = 3/200 (1%)
Query: 136 SPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERI 195
S W D+ + ++ K G A ++ + TG + ++ L + V+ ++
Sbjct: 96 SITWADNCAKSIVQD-AKNRGFAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEVFSQAQKW 154
Query: 196 SVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLAPAHA 255
+ ++ L G D T AAG +++++ W + +L+ +E+L K+A
Sbjct: 155 IGIKEYIIFRLTGKLVT-DTTXAAGTGILNLKTLTWDQELLDILKIK-KEQLPKIAQPTK 212
Query: 256 VAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDP 315
V I +V++ + + ++ + D S G+ S A+++GTS + I D P
Sbjct: 213 VIFPIKTEYVKKLGIDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQP 272
Query: 316 EPRLEGHVFPNPVDTKGYMI 335
+ F P D Y++
Sbjct: 273 KIDPSASYFCYPADKTHYLL 292
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 35/229 (15%)
Query: 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVY-RDPSNNGRIVSPT 68
++ L D STQS K D LNIV S L + + K G Y DP +
Sbjct: 8 NVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKC----LKPGWYEHDP------IEIM 57
Query: 69 LMWIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLG 128
+ + + Q+ + W + + KPL + +
Sbjct: 58 TNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITG---------KPLYNAI- 107
Query: 129 DAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW+D+ E ++ K TG+ F+ +I L Q P +
Sbjct: 108 ---------VWLDTRVEELVTEFSAKYNNN-DIQKKTGTYFNTYFSAFKILWLIQNNPEI 157
Query: 189 Y----DDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSK 233
D T I +++++ L D T+A+ LMDI W +
Sbjct: 158 KQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDE 206
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 35/229 (15%)
Query: 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVY-RDPSNNGRIVSPT 68
++ L D STQS K D LNIV S L + + K G Y DP +
Sbjct: 4 NVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKC----LKPGWYEHDP------IEIM 53
Query: 69 LMWIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLG 128
+ + + Q+ + W + + KPL + +
Sbjct: 54 TNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITG---------KPLYNAI- 103
Query: 129 DAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW+D+ E ++ K TG+ F+ +I L Q P +
Sbjct: 104 ---------VWLDTRVEELVTEFSAKYNNN-DIQKKTGTYFNTYFSAFKILWLIQNNPEI 153
Query: 189 Y----DDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSK 233
D T I +++++ L D T+A+ LMDI W +
Sbjct: 154 KQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDE 202
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSSTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ A + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EVLA--------KADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 136 SPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERI 195
S +W D + A+ E+E A+ ALE R + T +IR Q +P D+ E++
Sbjct: 11 SKIWADENKYAKMLEVELAILEALE------DRMVPKGTAAEIRARAQIRPERVDEIEKV 64
Query: 196 S 196
+
Sbjct: 65 T 65
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSSTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ A + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EVLA--------KADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 87/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSSTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EV--------LTKADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSWTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ A + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EVLA--------KADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,167,828
Number of Sequences: 62578
Number of extensions: 486630
Number of successful extensions: 919
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 14
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)