Query 015802
Match_columns 400
No_of_seqs 135 out of 1482
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:42:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02669 xylulokinase 100.0 2.3E-73 4.9E-78 593.8 40.0 393 3-397 1-395 (556)
2 TIGR01314 gntK_FGGY gluconate 100.0 1.6E-68 3.6E-73 553.9 35.0 343 11-390 1-356 (505)
3 PRK15027 xylulokinase; Provisi 100.0 7.2E-68 1.6E-72 546.5 34.1 340 11-390 1-342 (484)
4 COG1070 XylB Sugar (pentulose 100.0 4.2E-65 9.2E-70 527.2 33.9 348 7-391 1-357 (502)
5 PRK10331 L-fuculokinase; Provi 100.0 3.1E-65 6.7E-70 525.1 32.3 338 10-385 2-347 (470)
6 PTZ00294 glycerol kinase-like 100.0 4E-64 8.6E-69 520.9 32.4 341 11-390 3-361 (504)
7 PRK00047 glpK glycerol kinase; 100.0 5E-64 1.1E-68 519.6 32.8 338 10-389 5-357 (498)
8 PLN02295 glycerol kinase 100.0 3.9E-64 8.4E-69 521.7 30.9 338 11-390 1-362 (512)
9 TIGR01312 XylB D-xylulose kina 100.0 2.4E-63 5.2E-68 512.5 34.5 340 13-389 1-344 (481)
10 PRK10939 autoinducer-2 (AI-2) 100.0 1.9E-63 4.1E-68 517.6 32.1 342 10-391 3-363 (520)
11 TIGR01234 L-ribulokinase L-rib 100.0 2E-63 4.3E-68 519.1 32.1 355 10-390 1-391 (536)
12 TIGR02628 fuculo_kin_coli L-fu 100.0 3.7E-63 8.1E-68 508.9 32.0 335 10-382 1-348 (465)
13 PRK04123 ribulokinase; Provisi 100.0 4.9E-63 1.1E-67 517.7 32.3 354 10-390 3-394 (548)
14 TIGR01315 5C_CHO_kinase FGGY-f 100.0 3.6E-63 7.8E-68 517.3 28.4 349 11-390 1-396 (541)
15 TIGR01311 glycerol_kin glycero 100.0 4.4E-62 9.6E-67 504.4 32.4 337 10-389 1-353 (493)
16 COG0554 GlpK Glycerol kinase [ 100.0 2E-59 4.4E-64 460.1 25.5 343 9-393 4-360 (499)
17 PF00370 FGGY_N: FGGY family o 100.0 2.3E-55 5E-60 414.9 21.1 243 11-289 1-245 (245)
18 TIGR02627 rhamnulo_kin rhamnul 100.0 1.8E-54 4E-59 443.4 26.1 326 13-389 1-334 (454)
19 KOG2531 Sugar (pentulose and h 100.0 2.1E-52 4.5E-57 404.8 29.5 392 5-399 4-396 (545)
20 COG1069 AraB Ribulose kinase [ 100.0 1.2E-52 2.7E-57 417.6 23.9 351 9-388 2-382 (544)
21 PRK10640 rhaB rhamnulokinase; 100.0 3.9E-48 8.5E-53 397.7 27.3 282 65-386 32-321 (471)
22 KOG2517 Ribulose kinase and re 100.0 1.6E-44 3.5E-49 362.5 21.4 346 9-391 5-370 (516)
23 PF02782 FGGY_C: FGGY family o 98.8 1.4E-08 3.1E-13 92.2 8.5 93 298-390 1-104 (198)
24 TIGR00241 CoA_E_activ CoA-subs 98.6 1.1E-07 2.3E-12 90.1 7.4 68 11-106 1-70 (248)
25 COG1940 NagC Transcriptional r 98.3 4.8E-06 1E-10 81.4 10.1 122 7-154 3-128 (314)
26 PRK13311 N-acetyl-D-glucosamin 98.0 2E-05 4.3E-10 74.9 9.0 112 11-151 1-115 (256)
27 PRK09698 D-allose kinase; Prov 98.0 3.5E-05 7.6E-10 74.9 10.6 77 8-111 2-78 (302)
28 PRK13310 N-acetyl-D-glucosamin 97.8 9.4E-05 2E-09 72.0 8.6 113 11-152 1-116 (303)
29 PRK09557 fructokinase; Reviewe 97.7 0.00014 3.1E-09 70.7 9.2 112 11-151 1-115 (301)
30 TIGR00744 ROK_glcA_fam ROK fam 97.7 0.00011 2.4E-09 71.9 8.4 111 13-151 1-116 (318)
31 smart00732 YqgFc Likely ribonu 97.6 9.9E-05 2.1E-09 59.2 4.7 29 12-40 3-31 (99)
32 PF00480 ROK: ROK family; Int 97.5 0.0001 2.2E-09 65.7 3.9 67 14-110 1-67 (179)
33 PRK05082 N-acetylmannosamine k 97.4 0.00051 1.1E-08 66.4 8.6 108 12-150 3-114 (291)
34 TIGR03192 benz_CoA_bzdQ benzoy 97.3 0.0011 2.3E-08 64.0 8.6 67 10-103 32-100 (293)
35 TIGR03286 methan_mark_15 putat 97.3 0.00074 1.6E-08 67.6 7.8 69 8-104 142-212 (404)
36 PRK12408 glucokinase; Provisio 97.1 0.00071 1.5E-08 67.0 5.4 26 8-33 14-39 (336)
37 TIGR02261 benz_CoA_red_D benzo 96.9 0.0045 9.7E-08 58.8 8.7 70 11-103 2-74 (262)
38 PRK13318 pantothenate kinase; 96.9 0.0025 5.5E-08 60.6 6.9 65 11-99 1-65 (258)
39 PRK00292 glk glucokinase; Prov 96.9 0.0028 6E-08 62.1 7.2 31 10-40 2-33 (316)
40 PRK13321 pantothenate kinase; 96.8 0.0026 5.7E-08 60.5 6.2 65 11-99 1-65 (256)
41 PF01869 BcrAD_BadFG: BadF/Bad 96.8 0.0021 4.5E-08 61.5 5.3 63 13-94 1-65 (271)
42 PF05378 Hydant_A_N: Hydantoin 96.7 0.0027 5.8E-08 57.0 5.6 75 13-112 2-78 (176)
43 PRK14101 bifunctional glucokin 96.7 0.0014 3.1E-08 70.4 3.8 108 8-149 16-123 (638)
44 COG2971 Predicted N-acetylgluc 96.6 0.0062 1.3E-07 58.5 7.0 57 7-83 2-59 (301)
45 COG1924 Activator of 2-hydroxy 96.0 0.021 4.6E-07 56.3 7.3 73 7-105 132-204 (396)
46 TIGR02259 benz_CoA_red_A benzo 95.8 0.011 2.3E-07 59.1 4.6 33 9-41 1-33 (432)
47 TIGR00749 glk glucokinase, pro 95.8 0.019 4E-07 56.3 6.1 24 13-36 1-24 (316)
48 PRK15080 ethanolamine utilizat 95.6 0.063 1.4E-06 51.4 8.9 61 8-84 22-82 (267)
49 PF14574 DUF4445: Domain of un 95.5 0.032 6.8E-07 56.6 6.6 84 10-99 1-92 (412)
50 PRK09472 ftsA cell division pr 95.2 0.11 2.4E-06 53.1 9.7 76 7-99 5-86 (420)
51 smart00842 FtsA Cell division 94.6 0.22 4.8E-06 44.9 9.1 71 12-99 1-77 (187)
52 PF00349 Hexokinase_1: Hexokin 94.1 0.089 1.9E-06 48.4 5.2 71 11-97 64-138 (206)
53 TIGR01174 ftsA cell division p 93.7 0.29 6.4E-06 49.0 8.6 81 11-110 1-87 (371)
54 KOG1794 N-Acetylglucosamine ki 93.5 0.35 7.5E-06 46.3 8.0 70 9-97 2-74 (336)
55 TIGR02529 EutJ ethanolamine ut 93.0 0.25 5.5E-06 46.4 6.5 53 14-82 1-53 (239)
56 TIGR02707 butyr_kinase butyrat 92.8 0.28 6.2E-06 48.8 6.9 28 12-39 2-29 (351)
57 PTZ00288 glucokinase 1; Provis 92.6 0.65 1.4E-05 47.2 9.2 72 8-99 24-101 (405)
58 TIGR03123 one_C_unchar_1 proba 91.7 0.28 6E-06 48.1 5.1 74 13-111 1-74 (318)
59 PRK13317 pantothenate kinase; 91.6 0.23 4.9E-06 47.9 4.3 27 10-36 2-28 (277)
60 COG4972 PilM Tfp pilus assembl 91.0 0.5 1.1E-05 46.1 6.0 35 5-39 3-39 (354)
61 PF13941 MutL: MutL protein 90.8 0.93 2E-05 46.7 8.0 51 12-85 2-55 (457)
62 PRK13324 pantothenate kinase; 90.3 1 2.2E-05 42.9 7.5 66 11-99 1-66 (258)
63 PLN02914 hexokinase 89.6 0.87 1.9E-05 47.3 6.7 59 11-85 96-157 (490)
64 TIGR01175 pilM type IV pilus a 88.7 1.7 3.6E-05 42.9 8.0 34 9-42 2-38 (348)
65 COG4820 EutJ Ethanolamine util 88.2 0.74 1.6E-05 41.9 4.5 34 7-40 26-59 (277)
66 PF11104 PilM_2: Type IV pilus 87.4 1.9 4.1E-05 42.7 7.4 69 14-99 1-72 (340)
67 PRK00976 hypothetical protein; 87.3 1.5 3.3E-05 43.0 6.4 21 10-30 1-21 (326)
68 PLN02596 hexokinase-like 86.6 1.7 3.6E-05 45.3 6.6 59 11-85 97-158 (490)
69 PRK13326 pantothenate kinase; 86.1 1.8 3.9E-05 41.3 6.2 26 10-36 6-31 (262)
70 PLN02405 hexokinase 86.1 1.7 3.8E-05 45.3 6.4 60 10-85 95-157 (497)
71 PLN02362 hexokinase 85.9 1.7 3.8E-05 45.4 6.4 60 10-85 95-157 (509)
72 COG0145 HyuA N-methylhydantoin 85.8 2.3 5E-05 46.0 7.4 77 10-111 2-78 (674)
73 TIGR00555 panK_eukar pantothen 85.6 2.6 5.7E-05 40.6 7.0 24 12-35 2-25 (279)
74 TIGR03281 methan_mark_12 putat 85.5 1 2.2E-05 43.6 4.0 23 12-34 1-23 (326)
75 TIGR00671 baf pantothenate kin 85.4 2.3 5E-05 40.1 6.5 28 12-40 1-28 (243)
76 COG3734 DgoK 2-keto-3-deoxy-ga 85.1 1.3 2.9E-05 42.3 4.6 33 7-39 2-34 (306)
77 PRK13320 pantothenate kinase; 85.0 3.1 6.6E-05 39.3 7.1 24 11-35 3-26 (244)
78 COG0849 ftsA Cell division ATP 83.7 7.3 0.00016 39.8 9.6 58 11-84 7-68 (418)
79 PTZ00107 hexokinase; Provision 83.5 1.8 3.9E-05 44.8 5.2 65 10-85 74-143 (464)
80 PRK11031 guanosine pentaphosph 82.6 4.4 9.6E-05 42.4 7.8 82 7-100 3-88 (496)
81 COG3894 Uncharacterized metal- 82.0 1.8 3.9E-05 44.5 4.4 36 6-41 160-196 (614)
82 PRK10854 exopolyphosphatase; P 81.2 4.8 0.00011 42.3 7.5 27 7-33 8-35 (513)
83 PLN02666 5-oxoprolinase 80.0 3.7 8E-05 47.6 6.5 86 7-112 6-98 (1275)
84 TIGR03706 exo_poly_only exopol 78.0 6.4 0.00014 38.2 6.7 19 12-30 2-20 (300)
85 PRK13331 pantothenate kinase; 76.3 8.9 0.00019 36.4 7.0 26 9-35 6-31 (251)
86 PRK03011 butyrate kinase; Prov 75.9 5.6 0.00012 39.8 5.8 31 11-42 3-33 (358)
87 PF02685 Glucokinase: Glucokin 74.1 8.6 0.00019 37.8 6.5 63 13-99 1-66 (316)
88 COG1548 Predicted transcriptio 73.7 7.6 0.00016 36.9 5.5 24 11-36 4-27 (330)
89 COG1521 Pantothenate kinase ty 71.8 8.5 0.00018 36.5 5.6 30 12-42 2-31 (251)
90 PTZ00009 heat shock 70 kDa pro 68.7 5.2 0.00011 43.3 3.9 23 7-29 1-23 (653)
91 COG0248 GppA Exopolyphosphatas 67.6 5.1 0.00011 41.8 3.4 22 9-30 2-23 (492)
92 PRK09604 UGMP family protein; 67.3 13 0.00028 36.8 6.0 79 11-98 2-80 (332)
93 PRK11678 putative chaperone; P 67.1 4.3 9.3E-05 41.9 2.7 22 11-33 1-22 (450)
94 PRK00290 dnaK molecular chaper 66.2 5.2 0.00011 43.1 3.3 19 11-29 3-21 (627)
95 PF00871 Acetate_kinase: Aceto 65.8 20 0.00044 36.2 7.2 82 12-98 2-89 (388)
96 COG0443 DnaK Molecular chapero 65.8 7.8 0.00017 41.4 4.4 23 9-31 4-26 (579)
97 COG4020 Uncharacterized protei 65.7 7.4 0.00016 36.8 3.7 26 10-35 3-28 (332)
98 PRK12440 acetate kinase; Revie 64.6 9.8 0.00021 38.5 4.6 33 7-39 1-34 (397)
99 PF07318 DUF1464: Protein of u 63.2 5.6 0.00012 39.3 2.6 29 14-42 1-29 (343)
100 COG5026 Hexokinase [Carbohydra 62.5 7.4 0.00016 39.6 3.3 61 8-85 73-136 (466)
101 CHL00094 dnaK heat shock prote 60.5 7.7 0.00017 41.8 3.3 22 11-33 3-24 (621)
102 PF14450 FtsA: Cell division p 60.4 9.8 0.00021 31.5 3.2 18 12-29 1-18 (120)
103 PF05035 DGOK: 2-keto-3-deoxy- 59.4 10 0.00022 36.7 3.6 27 16-42 1-27 (287)
104 TIGR00329 gcp_kae1 metallohydr 59.2 15 0.00033 35.8 4.8 77 13-98 1-77 (305)
105 PRK05183 hscA chaperone protei 58.2 9.1 0.0002 41.2 3.4 20 10-29 19-38 (616)
106 PF04312 DUF460: Protein of un 58.2 18 0.00038 31.0 4.4 32 8-40 30-61 (138)
107 PRK13410 molecular chaperone D 58.2 9.6 0.00021 41.4 3.5 22 11-33 3-24 (668)
108 PF01548 DEDD_Tnp_IS110: Trans 57.8 20 0.00043 30.3 4.8 29 12-40 1-29 (144)
109 TIGR02350 prok_dnaK chaperone 57.7 8.8 0.00019 41.0 3.1 19 11-29 1-19 (595)
110 PF00012 HSP70: Hsp70 protein; 57.4 7.8 0.00017 41.2 2.7 18 12-29 1-18 (602)
111 PTZ00186 heat shock 70 kDa pre 56.8 11 0.00023 41.0 3.6 21 10-30 27-47 (657)
112 PRK07058 acetate kinase; Provi 56.7 16 0.00034 37.0 4.5 33 7-39 1-36 (396)
113 PRK13411 molecular chaperone D 56.3 10 0.00022 41.1 3.4 19 11-29 3-21 (653)
114 PRK13322 pantothenate kinase; 54.9 11 0.00025 35.5 3.1 24 11-34 1-24 (246)
115 PTZ00340 O-sialoglycoprotein e 53.6 36 0.00078 33.9 6.4 77 11-98 2-78 (345)
116 COG0282 ackA Acetate kinase [E 53.5 23 0.0005 35.6 5.0 81 11-97 2-89 (396)
117 TIGR01319 glmL_fam conserved h 53.1 31 0.00067 35.6 6.0 29 15-43 1-30 (463)
118 TIGR00904 mreB cell shape dete 51.5 12 0.00026 36.7 2.7 22 13-35 5-26 (333)
119 PTZ00400 DnaK-type molecular c 50.7 14 0.00031 40.1 3.4 19 11-29 42-60 (663)
120 PRK01433 hscA chaperone protei 50.7 16 0.00034 39.2 3.7 19 10-28 19-37 (595)
121 PF14639 YqgF: Holliday-juncti 50.4 62 0.0013 28.1 6.7 29 11-39 6-38 (150)
122 TIGR01991 HscA Fe-S protein as 49.9 17 0.00037 38.9 3.8 18 12-29 1-18 (599)
123 PRK07157 acetate kinase; Provi 49.2 95 0.0021 31.6 8.7 28 12-39 5-33 (400)
124 TIGR03722 arch_KAE1 universal 49.2 24 0.00052 34.6 4.5 74 13-98 1-74 (322)
125 KOG1369 Hexokinase [Carbohydra 49.0 39 0.00084 35.1 6.0 60 9-84 85-146 (474)
126 PLN03184 chloroplast Hsp70; Pr 48.0 16 0.00035 39.7 3.3 19 11-29 40-58 (673)
127 TIGR03723 bact_gcp putative gl 46.5 35 0.00076 33.4 5.1 78 12-98 1-78 (314)
128 PRK13930 rod shape-determining 46.0 16 0.00034 35.8 2.6 22 4-27 4-25 (335)
129 PRK09605 bifunctional UGMP fam 45.3 49 0.0011 34.8 6.4 76 11-98 2-77 (535)
130 COG0837 Glk Glucokinase [Carbo 44.1 1.3E+02 0.0028 29.5 8.2 26 9-35 6-32 (320)
131 PRK13328 pantothenate kinase; 44.1 25 0.00054 33.4 3.6 24 11-34 2-25 (255)
132 PF03309 Pan_kinase: Type III 43.8 22 0.00048 32.4 3.1 19 12-30 1-19 (206)
133 PRK13928 rod shape-determining 43.3 16 0.00035 35.9 2.2 21 13-34 6-26 (336)
134 TIGR01865 cas_Csn1 CRISPR-asso 42.0 20 0.00044 39.9 2.9 23 10-32 1-23 (805)
135 PRK12397 propionate kinase; Re 41.7 36 0.00078 34.6 4.4 32 7-39 1-33 (404)
136 PRK13927 rod shape-determining 38.6 31 0.00068 33.7 3.4 15 12-26 7-21 (334)
137 TIGR03725 bact_YeaZ universal 37.2 41 0.00089 30.5 3.7 62 12-98 1-62 (202)
138 TIGR00016 ackA acetate kinase. 37.1 49 0.0011 33.6 4.6 29 11-39 5-35 (404)
139 PRK12379 propionate/acetate ki 36.9 53 0.0012 33.3 4.7 32 8-39 3-35 (396)
140 COG2183 Tex Transcriptional ac 36.8 88 0.0019 34.4 6.6 31 9-39 329-360 (780)
141 COG2441 Predicted butyrate kin 35.5 51 0.0011 31.8 4.0 49 13-81 1-50 (374)
142 PRK13929 rod-share determining 35.2 29 0.00062 34.2 2.5 13 12-24 6-18 (335)
143 PF06723 MreB_Mbl: MreB/Mbl pr 33.1 29 0.00062 34.3 2.1 14 12-25 3-16 (326)
144 COG3513 Predicted CRISPR-assoc 32.5 37 0.00081 37.3 2.9 24 7-30 1-24 (1088)
145 PF04848 Pox_A22: Poxvirus A22 31.9 89 0.0019 27.0 4.7 26 11-36 2-27 (143)
146 COG0533 QRI7 Metal-dependent p 31.7 1E+02 0.0023 30.5 5.7 81 11-104 2-84 (342)
147 PF02075 RuvC: Crossover junct 31.6 78 0.0017 27.3 4.4 23 12-34 1-23 (149)
148 TIGR03192 benz_CoA_bzdQ benzoy 31.1 51 0.0011 32.0 3.4 24 12-35 127-150 (293)
149 PRK00039 ruvC Holliday junctio 30.3 2.5E+02 0.0054 24.7 7.4 22 11-32 3-24 (164)
150 TIGR02261 benz_CoA_red_D benzo 28.7 60 0.0013 31.0 3.4 22 13-34 100-121 (262)
151 PRK13329 pantothenate kinase; 28.6 39 0.00085 32.0 2.1 19 11-29 2-20 (249)
152 PF07736 CM_1: Chorismate muta 28.0 89 0.0019 26.1 3.9 31 69-99 16-48 (118)
153 PRK00109 Holliday junction res 26.6 94 0.002 26.5 4.0 24 11-34 5-28 (138)
154 COG1214 Inactive homolog of me 26.2 1.3E+02 0.0029 27.8 5.2 31 11-41 2-33 (220)
155 PRK14878 UGMP family protein; 25.9 1.2E+02 0.0026 29.8 5.1 73 13-98 1-73 (323)
156 PF13290 CHB_HEX_C_1: Chitobia 25.1 66 0.0014 23.8 2.4 20 13-33 43-62 (67)
157 PF13756 Stimulus_sens_1: Stim 23.3 81 0.0018 25.9 2.8 24 18-41 15-38 (112)
158 PF03652 UPF0081: Uncharacteri 23.0 93 0.002 26.4 3.2 23 11-33 2-24 (135)
159 cd00529 RuvC_resolvase Hollida 23.0 2.9E+02 0.0063 23.8 6.4 21 12-32 2-22 (154)
160 PRK13325 bifunctional biotin-- 22.8 98 0.0021 33.2 4.1 25 9-34 337-361 (592)
161 cd02185 AroH Chorismate mutase 22.4 1.1E+02 0.0025 25.4 3.5 31 69-99 16-48 (117)
162 PRK14717 putative glycine/sarc 22.2 84 0.0018 25.3 2.5 35 262-297 10-44 (107)
163 COG4012 Uncharacterized protei 21.9 1.1E+02 0.0025 29.3 3.8 27 11-38 228-254 (342)
164 TIGR01796 CM_mono_aroH monofun 21.8 1.2E+02 0.0026 25.3 3.5 31 69-99 16-48 (117)
165 PRK09585 anmK anhydro-N-acetyl 21.1 1.1E+02 0.0024 30.7 3.8 90 10-104 2-102 (365)
166 KOG1386 Nucleoside phosphatase 20.7 2E+02 0.0043 30.0 5.5 68 7-85 6-77 (501)
167 COG0816 Predicted endonuclease 20.7 1.2E+02 0.0026 26.2 3.4 22 10-31 2-23 (141)
168 PF01968 Hydantoinase_A: Hydan 20.3 89 0.0019 30.2 2.9 23 11-34 78-100 (290)
169 COG3461 Uncharacterized conser 20.1 77 0.0017 25.0 1.9 49 135-194 31-83 (103)
No 1
>PLN02669 xylulokinase
Probab=100.00 E-value=2.3e-73 Score=593.77 Aligned_cols=393 Identities=80% Similarity=1.263 Sum_probs=363.0
Q ss_pred CCCCCCCceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHH
Q 015802 3 DYSLPKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKL 82 (400)
Q Consensus 3 ~~~~~~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l 82 (400)
+-||+.+.|+||||+|||++|+++||++|+++++++++|+..++++++++++||||++.+++++++++||++++.+++++
T Consensus 1 ~~~~~~~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l 80 (556)
T PLN02669 1 DLSLPEDSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKL 80 (556)
T ss_pred CCCCCCCCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999998878877778999999867899999999999999999998
Q ss_pred hhc-CCCCCEeEEEeecccceeeEecC-CCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHH
Q 015802 83 SKS-LDLSKVTAVSGSGQQHGSVYWKK-GSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALE 160 (400)
Q Consensus 83 ~~~-~~~~~I~aIgis~~~~~~v~~d~-~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~ 160 (400)
.+. .+.++|++|++|+|+||+|+||+ ++++ +..||+++++.++|+++|+++|+|+|+|.|+.++++++++.+++.++
T Consensus 81 ~~~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~-L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~ 159 (556)
T PLN02669 81 AKEKFPFHKVVAISGSGQQHGSVYWRKGASAV-LKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAE 159 (556)
T ss_pred HHcCCChhhEEEEEecCCcceEEEecCCCCcc-ccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHH
Confidence 765 66788999999999999999999 5776 67789999999999999999999999999999999999998865678
Q ss_pred HHHHhCCCCCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcC
Q 015802 161 LSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATA 240 (400)
Q Consensus 161 ~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g 240 (400)
++++||++.++.++.+|++|+++|+||+|+|+++|+.++|||+|+|||+.+.+|+|+||++++||+++++|++++++.++
T Consensus 160 l~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sdasg~~l~Di~~~~Ws~~ll~~~~ 239 (556)
T PLN02669 160 LSKLTGSRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETDGAGMNLMDIEKRCWSKAALEATA 239 (556)
T ss_pred HHHHHCCcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchhhhhhhhhccccCCcCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999996449999999999999999999999999997
Q ss_pred CchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCCC
Q 015802 241 PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLE 320 (400)
Q Consensus 241 ~~~~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~ 320 (400)
+++.++||+++++++++|+|++++|+++||++||||++|++|++|+++|+|+.++|++++|+|||+++.++++++.+++.
T Consensus 240 ~~l~~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~~~~~~~~~~ 319 (556)
T PLN02669 240 PGLEEKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITREPQPSLE 319 (556)
T ss_pred ccHHHHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEecCCCCCCCC
Confidence 55468999999999999999999999999999999999999999999999999999999999999999999998887776
Q ss_pred ceeecCCCCCCceEEEEEEecchhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCCCCCCeeeee
Q 015802 321 GHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPGVLFHYF 397 (400)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~~~~~ 397 (400)
.+.++|+..++.|+.+++..+||.+++|+++.+....|+.|++++++++|+++|++++||+.||+.|+.+. +..+|
T Consensus 320 ~~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~~~~~~~~~~~~~~~~~g~~g~l~~~~~~~e~~P~~~~-~~~~~ 395 (556)
T PLN02669 320 GHVFPNPVDPESYMVMLCYKNGSLTREDIRNRCADGSWDVFNKLLEQTPPLNGGKLGFYYKEHEILPPLPV-GFHRY 395 (556)
T ss_pred cceeeCccCCCCeEEEEEecchHHHHHHHHHHhccCcHHHHHHHHHhCCCCCCCEEEeeccCcccCCCCCC-ccchh
Confidence 66688876689999999999999999999999865678999999999999999999999999999998765 44443
No 2
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=1.6e-68 Score=553.92 Aligned_cols=343 Identities=20% Similarity=0.288 Sum_probs=315.3
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (400)
|+||||+|||++|++++|.+|++++..+.+++...+.+ |+.|||++ +||+.++++++++.+. .+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~---g~~e~d~~----------~~~~~~~~~i~~~~~~~~~~- 66 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPAS---GMAEENPE----------EIFEAVLVTIREVSINLEDE- 66 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCC---CCeeeCHH----------HHHHHHHHHHHHHHHhCCCc-
Confidence 58999999999999999999999999999888666655 46888888 9999999999998874 23
Q ss_pred CCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHhCCC
Q 015802 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (400)
Q Consensus 89 ~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~tG~~ 168 (400)
++|.+|||++||+++++||++|+| ++|+|+|+|.|+.++++++++.++ .++++++||++
T Consensus 67 ~~I~~Igis~~~~~~v~~D~~g~p--------------------l~~~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~~ 125 (505)
T TIGR01314 67 DEILFVSFSTQMHSLIAFDENWQP--------------------LTRLITWADNRAVKYAEQIKESKN-GFDIYRRTGTP 125 (505)
T ss_pred CceEEEEEecccceeEEECCCcCC--------------------cccceeccccchHHHHHHHHhhcC-HHHHHHHHCCC
Confidence 679999999999999999999998 699999999999999999998763 56799999999
Q ss_pred CCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcCCchhhhcC
Q 015802 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLG 248 (400)
Q Consensus 169 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g~~~~~~LP 248 (400)
+++.++++|++|+++|+|++|+|+++|++++|||+|||||+.+ +|+|+||+|++||+++++|++++++.+|++ +++||
T Consensus 126 ~~~~~~~~kl~Wl~~~~p~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~ell~~~gi~-~~~lP 203 (505)
T TIGR01314 126 IHPMAPLSKIIWLEAEHPDIYQKAAKYLEIKGYIFQRLFGTYK-IDYSTASATGMFNLFELDWDKEALELTGIK-ESQLP 203 (505)
T ss_pred CCccchHHHHHHHHHhChhHHHhhcEEECHHHHHHHHHcCCce-eEhhhhhhhcceeCCCCCCCHHHHHhcCCC-HHHCC
Confidence 9999999999999999999999999999999999999999987 999999999999999999999999999988 89999
Q ss_pred CcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCCCceeecCCC
Q 015802 249 KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHVFPNPV 328 (400)
Q Consensus 249 ~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~ 328 (400)
+++++++++|+|++++|+++||++||||++|++|++|+++|+|+.++|++++++|||+++.++++++..++....+++.+
T Consensus 204 ~l~~~g~~iG~l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~ 283 (505)
T TIGR01314 204 KLVPTTEIEENLPHEYAKKMGIQSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVIDKPKTDEKGRIFCYAL 283 (505)
T ss_pred CCcCcccccCCcCHHHHHHhCCCCCCeEEEeccHHHHHHhcCCCCCCCcEEEEechhheeeeccCcCccCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998877665554566654
Q ss_pred CCCceEEEEEEecchhHHHHHHHHhcC-----------ccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCCCC
Q 015802 329 DTKGYMIMLVYKNASLTREDVRNRCAE-----------KSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLP 390 (400)
Q Consensus 329 ~~~~~~~~~~~~~~G~~~~W~~~~~~~-----------~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~ 390 (400)
.++.|+.+++++++|.+++||++.+.. +.|+.|++++++++++++|++|+|||.|+|+|+|-
T Consensus 284 ~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~ 356 (505)
T TIGR01314 284 TKEHWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWN 356 (505)
T ss_pred cCCcEEEEeeecchHhHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCC
Confidence 457899999999999999999997742 35889999999999999999999999999999753
No 3
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=7.2e-68 Score=546.45 Aligned_cols=340 Identities=22% Similarity=0.342 Sum_probs=310.9
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
++||||+||||+|+++||.+|++++.++.+++...+.+ ++.||||+ +||++++++++++.+....++
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~---g~~eqd~~----------~~w~~~~~~~~~l~~~~~~~~ 67 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHP---LWSEQDPE----------QWWQATDRAMKALGDQHSLQD 67 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCC---CccccCHH----------HHHHHHHHHHHHHHHhCCccc
Confidence 58999999999999999999999999999998766665 46788888 999999999999987534568
Q ss_pred EeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHhCCCCC
Q 015802 91 VTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGY 170 (400)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~tG~~~~ 170 (400)
|.+||||+|+||++++|++|+| ++|+|+|+|.|+.++++++++..+ ++++.||++++
T Consensus 68 I~aI~is~q~~~~v~~D~~g~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~---~~~~~tG~~~~ 124 (484)
T PRK15027 68 VKALGIAGQMHGATLLDAQQRV--------------------LRPAILWNDGRCAQECALLEARVP---QSRVITGNLMM 124 (484)
T ss_pred eeEEEEecCCCceEEECCCcCC--------------------ccccccccCccHHHHHHHHHHhcc---hhHHHhCCCcC
Confidence 9999999999999999999998 699999999999999999998753 46789999999
Q ss_pred CCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcCCchhhhcCCc
Q 015802 171 ERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKL 250 (400)
Q Consensus 171 ~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g~~~~~~LP~l 250 (400)
+.++++||+|+++|+||+|+|+++|++++|||+|+|||+.+ +|+|+|++|++||+++++|++++++.+|++ .++||++
T Consensus 125 ~~~~~~kl~Wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~as~t~l~d~~~~~w~~~ll~~~gi~-~~~lP~v 202 (484)
T PRK15027 125 PGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFA-SDMSDAAGTMWLDVAKRDWSDVMLQACHLS-RDQMPAL 202 (484)
T ss_pred ccchHHHHHHHHHhCHHHHHHhhhhcChHHHHHhhhcCCcc-ccHHHhhcccccccccCCCcHHHHHHhCCC-HHHCCCC
Confidence 99999999999999999999999999999999999999997 999999999999999999999999999987 8999999
Q ss_pred ccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCCC--ceeecCCC
Q 015802 251 APAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLE--GHVFPNPV 328 (400)
Q Consensus 251 ~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~--~~~~~~~~ 328 (400)
+++++++|+|++++|+++||+ +|||++|++|++|+++|+|+.++|++++++|||+++..+++++..++. ...+++.
T Consensus 203 ~~~~~~~G~l~~~~a~~~GL~-~~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~- 280 (484)
T PRK15027 203 YEGSEITGALLPEVAKAWGMA-TVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHA- 280 (484)
T ss_pred CCCccccccccHHHHHHhCCC-CCeEEecccHHHHHHhccCcccCCcEEEEecCceEEEEecCCcccCchhceeeccee-
Confidence 999999999999999999998 699999999999999999999999999999999999998887765543 2345664
Q ss_pred CCCceEEEEEEecchhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCCCC
Q 015802 329 DTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLP 390 (400)
Q Consensus 329 ~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~ 390 (400)
.++.|++++...++|.+++|+++++....|.++.+.+++++|+++|++|+|||.|+|+|+|.
T Consensus 281 ~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~ 342 (484)
T PRK15027 281 LPQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNN 342 (484)
T ss_pred cCCceEEEEEehhhHHHHHHHHHHhCCccHHHHHHHHhhCCCCCCceEEecccccCCCcCCC
Confidence 48899999999999999999999886556888888888899999999999999999999864
No 4
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-65 Score=527.17 Aligned_cols=348 Identities=25% Similarity=0.330 Sum_probs=315.3
Q ss_pred CCCceEEEEEecCcceEEEEEcCC-CCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDSN-LNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~~-G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (400)
|+++|+||||+|||++|++++|.+ |++++..+..++...+++ ||.||||+ +||++++++++++.+.
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~---g~~e~d~~----------~~w~~~~~ai~~l~~~ 67 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQP---GWAEQDPD----------ELWQAILEALRQLLEE 67 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCC---CCcccCHH----------HHHHHHHHHHHHHHHh
Confidence 578899999999999999999999 999999999998877776 46888888 9999999999998875
Q ss_pred --CCCCCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHH
Q 015802 86 --LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSK 163 (400)
Q Consensus 86 --~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~ 163 (400)
++..+|.+||||+|||+++++|++|+| ++|+|+|+|.|+.++++++.+.++. ++.+.
T Consensus 68 ~~~~~~~I~aI~is~~~~g~vllD~~g~~--------------------L~~~i~w~D~R~~~~~~~l~~~~~~-~~~~~ 126 (502)
T COG1070 68 SKIDPDAIAAIGISGQGHGLVLLDANGEP--------------------LRPAILWNDTRAAEEVEELEERLGG-EALYA 126 (502)
T ss_pred cccChhhceEEEEeccccceEEECCCCCC--------------------ccccceecchhhHHHHHHHHhhccc-hhhhh
Confidence 677899999999999999999999998 6999999999999999999998753 67778
Q ss_pred HhCCCCCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcCCch
Q 015802 164 LTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSL 243 (400)
Q Consensus 164 ~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g~~~ 243 (400)
.||+++.+.++++||+|+++|+||+|+|+++|++++|||.|||||+.+ +|+|+|++|++||++++.|+.++++.+|++
T Consensus 127 ~t~~~~~~~~t~~kL~Wl~~~~P~~~~k~~~il~~~dyl~~rLTG~~~-~e~s~as~t~l~d~~~~~w~~~~l~~~gl~- 204 (502)
T COG1070 127 RTGLQAMPGFTAPKLLWLKENEPDLFAKAAKILLIKDYLRYRLTGEFA-TEISDASGTGLLDIRTRKWDWELLAALGLP- 204 (502)
T ss_pred hcCCCcCccccHHHHHHHHhcCcHHHHhhhheechHHHHHHHHhCCcc-cccccccccccccccccccCHHHHHHcCCC-
Confidence 899999999999999999999999999999999999999999999997 999999999999999999999999999976
Q ss_pred h-hhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCCCc-
Q 015802 244 E-EKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEG- 321 (400)
Q Consensus 244 ~-~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~- 321 (400)
+ ++||+++.+++++|+|++++|+++||++++||++|+||++++++|+|+.++|++..++||+.++..+++++..++..
T Consensus 205 ~~~~lp~vv~~g~~~G~l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~~~~~~~~~~ 284 (502)
T COG1070 205 ERDLLPPVVEPGEVLGTLTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDKPLDDPRGS 284 (502)
T ss_pred hHHhCCCccCccceeccccHHHHHHhCCCCCCeEEECCchHHHHhccCCCcCCCcEEEEeccccEEeeeccccccCCccc
Confidence 5 89999999999999999999999999999999999999999999999999999999999999999999886665544
Q ss_pred -eeecCCCCCCceEEEEEEecchhHHHHHHHHhcCc-cHHHHHHHHhcC--CCCCCCeEEEeccCCCCCCCCCC
Q 015802 322 -HVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEK-SWDVFNKYLQQT--PPLNGGKMGFYYKEHEILPPLPG 391 (400)
Q Consensus 322 -~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~-~~~~l~~~a~~~--~~g~~gl~~~P~l~G~r~P~~~~ 391 (400)
.++++. .++.|+.++.++++|.+++|+++.+... .+.++...+... ++++.++.|+|||.|||.|.+..
T Consensus 285 ~~~~~~~-~~~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~ 357 (502)
T COG1070 285 IYTFCLG-LPGWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADP 357 (502)
T ss_pred eeeeccc-CCCeEEEEEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCc
Confidence 445553 3788889999999999999999998753 455555444444 47789999999999999999854
No 5
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=3.1e-65 Score=525.06 Aligned_cols=338 Identities=17% Similarity=0.156 Sum_probs=297.9
Q ss_pred ceEEEEEecCcceEEEEEcCCCCEEEEEEeeccC--CCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCC
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDS--ELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~--~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (400)
+|+||||+||||+|+++||.+|++++.++.+++. ..+.+ |+.||||+ +||++++++++++.+...
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~---g~~eqd~~----------~~w~~~~~~~~~~~~~~~ 68 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENS---DWHQWSLD----------AILQRFADCCRQINSELT 68 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCC---CCcccCHH----------HHHHHHHHHHHHHHHhCC
Confidence 4899999999999999999999999999998763 23333 35677777 999999999999976434
Q ss_pred CCCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHhCC
Q 015802 88 LSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGS 167 (400)
Q Consensus 88 ~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~tG~ 167 (400)
..+|.+||||+|+++++++|++|+| ++|+|+|+|.|+.++++++++.++ .++++++||+
T Consensus 69 ~~~I~~I~is~~~~~~v~~D~~G~p--------------------l~p~i~w~D~Ra~~~~~~l~~~~~-~~~~~~~tG~ 127 (470)
T PRK10331 69 ECHIRGITVTTFGVDGALVDKQGNL--------------------LYPIISWKCPRTAAVMENIERYIS-AQQLQQISGV 127 (470)
T ss_pred ccceEEEEEeccccceEEECCCcCC--------------------ccCceeecCCCcHHHHHHHHHhcC-HHHHHhhhCC
Confidence 4679999999999999999999998 699999999999999999998863 5678999999
Q ss_pred CCCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcCCchhhhc
Q 015802 168 RGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKL 247 (400)
Q Consensus 168 ~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g~~~~~~L 247 (400)
++.+.++++|++|+++|+||+|+|+++|++++|||+|||||+.+ +|+|+|+.|++||+++++|++++++.+|++ .++|
T Consensus 128 ~~~~~~~~~Kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~ell~~~gi~-~~~l 205 (470)
T PRK10331 128 GAFSFNTLYKLVWLKENHPQLLEQAHAWLFISSLINHRLTGEFT-TDITMAGTSQMLDIQQRDFSPEILQATGLS-RRLF 205 (470)
T ss_pred CccccchHHHHHHHHHhCHHHHHHhhhhcCHHHHHHHhhcCccc-cchhhccceeeeecccCCCCHHHHHHcCCC-HHHC
Confidence 99999999999999999999999999999999999999999987 999999999999999999999999999988 8999
Q ss_pred CCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCCC----cee
Q 015802 248 GKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLE----GHV 323 (400)
Q Consensus 248 P~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~----~~~ 323 (400)
|+++++++++|+|++++|+++||++|+||++|++|++|+++|+|+ .+|++++++||++++..+++++..+.. ...
T Consensus 206 P~i~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~-~~g~~~~~~GT~~~~~~~~~~~~~~~~~~~~~~~ 284 (470)
T PRK10331 206 PRLVEAGEQIGTLQPSAAALLGLPVGIPVISAGHDTQFALFGSGA-GQNQPVLSSGTWEILMVRSAQVDTSLLSQYAGST 284 (470)
T ss_pred CCcccccccccccCHHHHHHhCCCCCCeEEEccccHHHHHhCCCC-CCCCEEEecchhhhheeecCCCcccccccccccc
Confidence 999999999999999999999999999999999999999999998 789999999999998888887654432 111
Q ss_pred ecCCCCCCceEEEEEEecchhHHHHHHHHhcC--ccHHHHHHHHhcCCCCCCCeEEEeccCCCC
Q 015802 324 FPNPVDTKGYMIMLVYKNASLTREDVRNRCAE--KSWDVFNKYLQQTPPLNGGKMGFYYKEHEI 385 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~--~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r 385 (400)
......++.|..++....+| +++|+++++.. ..|+.|++++++++|+++|++|+|+|.|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~g~-~~~W~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~ 347 (470)
T PRK10331 285 CELDSQSGLYNPGMQWLASG-VLEWVRKLFWTAETPYQTMIEEARAIPPGADGVKMQCDLLACQ 347 (470)
T ss_pred eeccccCceeeechhhHHHH-HHHHHHHHhcccCchHHHHHHHHhcCCCCCCceEecccccccC
Confidence 11112356676655554444 89999998852 468999999999999999999999999998
No 6
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=4e-64 Score=520.90 Aligned_cols=341 Identities=20% Similarity=0.217 Sum_probs=299.4
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (400)
++||||+||||+|+++||.+|++++.++.+++...+.+ |+.||||+ +||++++++++++.+. .++
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~---g~~eqd~~----------~~~~~~~~~l~~~~~~~~~~~ 69 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHP---GWLEHDPE----------EILRNVYKCMNEAIKKLREKG 69 (504)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCC---CeEeeCHH----------HHHHHHHHHHHHHHHHcCCCC
Confidence 89999999999999999999999999999998766665 46888888 9999999999998764 334
Q ss_pred C--CEeEEEeecccceeeEecC-CCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHh
Q 015802 89 S--KVTAVSGSGQQHGSVYWKK-GSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLT 165 (400)
Q Consensus 89 ~--~I~aIgis~~~~~~v~~d~-~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~t 165 (400)
. +|++||||+||++++++|+ +|+| ++|+|+|+|.|+.++++++.+.++..+.++++|
T Consensus 70 ~~~~I~aIgis~q~~~~v~~D~~~g~p--------------------l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~t 129 (504)
T PTZ00294 70 PSFKIKAIGITNQRETVVAWDKVTGKP--------------------LYNAIVWLDTRTYDIVNELTKKYGGSNFFQKIT 129 (504)
T ss_pred ccCceEEEEeecCcceEEEEECCCCCC--------------------cccceeecchhhHHHHHHHHhhcCcchHHHHhh
Confidence 4 7999999999999999987 6998 699999999999999999998864225677999
Q ss_pred CCCCCCCChHHHHHHHhhcCchhHHhccc----ccchhhHHHHHHhC--CceeeccchhccccccccCCCCccHHHHHHc
Q 015802 166 GSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAGMNLMDIRQRVWSKIVLEAT 239 (400)
Q Consensus 166 G~~~~~~~~~~kl~Wl~~~~pe~~~~~~~----~~~~~dyl~~~LTG--~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~ 239 (400)
|+++++.++++|++||++|+|++|+|+++ +++++|||.|+||| +.+ +|+|+||+||+||+++++|++++++.+
T Consensus 130 G~~~~~~~~~~kl~wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~As~tgl~D~~~~~W~~~ll~~~ 208 (504)
T PTZ00294 130 GLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWLIWNLTGGKSHV-TDVTNASRTFLMNIKTLKWDEELLNKF 208 (504)
T ss_pred CCcCCccchHHHHHHHHhcCHHHHHhhhcCCeEEEcHHHHHHHHhcCCceEE-EEhhhhHHhhccCcccCccCHHHHHHh
Confidence 99999999999999999999999997665 88999999999999 887 999999999999999999999999999
Q ss_pred CCchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecC-CCCCC
Q 015802 240 APSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITD-DPEPR 318 (400)
Q Consensus 240 g~~~~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~ 318 (400)
|++ .++||+|+++++++|+|++ +.+|+++|+||++|++|++|+++|+|++++|++.+++||++++...+. ++..+
T Consensus 209 gi~-~~~LP~v~~~~~~~G~l~~---~~~~~~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~ 284 (504)
T PTZ00294 209 GIP-KETLPEIKSSSENFGTISG---EAVPLLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFS 284 (504)
T ss_pred CCC-HHHCCCccCCccccCccch---hhcCCCCCCcEEEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccC
Confidence 988 8999999999999999994 467889999999999999999999999999999999999998666554 44443
Q ss_pred CC--ceeecCCCC---CCceEEEEEEecchhHHHHHHHHhc-CccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCCCC
Q 015802 319 LE--GHVFPNPVD---TKGYMIMLVYKNASLTREDVRNRCA-EKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLP 390 (400)
Q Consensus 319 ~~--~~~~~~~~~---~~~~~~~~~~~~~G~~~~W~~~~~~-~~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~ 390 (400)
+. ...+++... ++.|+.++.+.++|.+++|+++++. ..++.++++++++++ +++|++|+|||.|+|+|+|.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~gl~~~P~l~G~r~P~~~ 361 (504)
T PTZ00294 285 KHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVK-DTGGVVFVPAFSGLFAPYWR 361 (504)
T ss_pred CCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCCCCHHHHHHHHHhCC-CCCCEEEeCcccCCCCCCCC
Confidence 32 233444322 4489999999999999999999874 246778888888875 89999999999999999853
No 7
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=5e-64 Score=519.60 Aligned_cols=338 Identities=19% Similarity=0.220 Sum_probs=298.2
Q ss_pred ceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CC
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 87 (400)
+|+||||+||||+|++++|.+|+++++++++|+...+.+ ++.||||+ +||++++++++++.++ .+
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~---g~~e~d~~----------~~~~~~~~~~~~~~~~~~~~ 71 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQP---GWVEHDPN----------EIWASQLSVIAEALAKAGIS 71 (498)
T ss_pred CEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCC---CeEeeCHH----------HHHHHHHHHHHHHHHHcCCC
Confidence 589999999999999999999999999999998777765 46888888 9999999999998864 55
Q ss_pred CCCEeEEEeecccceeeEecCC-CccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHhC
Q 015802 88 LSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTG 166 (400)
Q Consensus 88 ~~~I~aIgis~~~~~~v~~d~~-g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~tG 166 (400)
+++|.+||||+|++++++||++ |+| ++|+|+|+|.|+.++++++++. +..++++++||
T Consensus 72 ~~~I~~Igis~~~~~~v~~D~~~G~p--------------------l~~~i~w~D~Ra~~~~~~l~~~-~~~~~~~~~tG 130 (498)
T PRK00047 72 PDQIAAIGITNQRETTVVWDKETGRP--------------------IYNAIVWQDRRTADICEELKRD-GYEDYIREKTG 130 (498)
T ss_pred hhHeeEEEEecCcceEEEEECCCCcC--------------------CcccceecccchHHHHHHHHhc-cchhhHHHhhC
Confidence 6789999999999999999965 998 6999999999999999999876 33455899999
Q ss_pred CCCCCCChHHHHHHHhhcCchhHHhccc----ccchhhHHHHHHhCC--ceeeccchhccccccccCCCCccHHHHHHcC
Q 015802 167 SRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIGA--YACIDETDAAGMNLMDIRQRVWSKIVLEATA 240 (400)
Q Consensus 167 ~~~~~~~~~~kl~Wl~~~~pe~~~~~~~----~~~~~dyl~~~LTG~--~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g 240 (400)
+++++.++++||+||++|+||+|+++.+ |++++|||.|||||. .+ +|+|+||+|++||+++++|++++++.+|
T Consensus 131 ~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~As~t~l~d~~~~~W~~ell~~~g 209 (498)
T PRK00047 131 LVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTWLVWKLTGGKVHV-TDYTNASRTMLFNIHTLDWDDELLELLD 209 (498)
T ss_pred CCCCccchHHHHHHHHHcCHhHHHHHhcCCeEEeChHHhHhhhhcCCCeeE-eechHHhhhhccccccCccCHHHHHhcC
Confidence 9999999999999999999999888754 778999999999965 56 9999999999999999999999999999
Q ss_pred CchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeec-CCCCCCC
Q 015802 241 PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGIT-DDPEPRL 319 (400)
Q Consensus 241 ~~~~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~-~~~~~~~ 319 (400)
++ +++||+++++++++|.|+++ +++++||||++|++|++|+++|+|+.++|++++++|||+++.+.+ +++..++
T Consensus 210 i~-~~~lP~i~~~g~~~G~v~~~----~~l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~ 284 (498)
T PRK00047 210 IP-RSMLPEVRPSSEVYGKTNPY----GFFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSE 284 (498)
T ss_pred CC-HHHCCCccCCcccccccccc----ccCCCCceEEEEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCC
Confidence 88 89999999999999999987 677799999999999999999999999999999999999977777 4566554
Q ss_pred C--ceeecCCCCCC--ceEEEEEEecchhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCCC
Q 015802 320 E--GHVFPNPVDTK--GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPL 389 (400)
Q Consensus 320 ~--~~~~~~~~~~~--~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~ 389 (400)
. ...+++.. ++ .|+.+++++++|.+++||++++.. ..+.++++++++++ +++|++|+|||.|+|+|+|
T Consensus 285 ~~~~~~~~~~~-~~~~~~~~~g~~~~~g~~l~W~~~~~~~~~~~~~~~~~a~~~~-~~~gl~~lP~l~G~r~P~~ 357 (498)
T PRK00047 285 NGLLTTIAWGI-DGKVVYALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVE-DNDGVYVVPAFTGLGAPYW 357 (498)
T ss_pred CCceeEEEEEc-CCCcEEEEEeeHhhHHHHHHHHHHHhcCCCCHHHHHHHHhcCC-CCCCEEEeCccccCCCCCC
Confidence 3 23344433 44 699999999999999999998852 34667788887765 7889999999999999986
No 8
>PLN02295 glycerol kinase
Probab=100.00 E-value=3.9e-64 Score=521.75 Aligned_cols=338 Identities=21% Similarity=0.238 Sum_probs=296.4
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (400)
++||||+||||+|+++||.+|++++.++.+|+...|++ |++||||+ +||++++++++++.+. .++
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~---G~~Eqdp~----------~~w~~~~~~i~~~~~~~~~~~ 67 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQA---GWVEHDPM----------EILESVLTCIAKALEKAAAKG 67 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCC---CcEeeCHH----------HHHHHHHHHHHHHHHHcCCCc
Confidence 58999999999999999999999999999998877776 46899998 9999999999998764 445
Q ss_pred CC----EeEEEeecccceeeEe-cCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCC-hHHHH
Q 015802 89 SK----VTAVSGSGQQHGSVYW-KKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGG-ALELS 162 (400)
Q Consensus 89 ~~----I~aIgis~~~~~~v~~-d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~-~~~~~ 162 (400)
++ |.+||+|+|++|+++| |++|+| ++|+|+|+|.|+.++++++++.+++ .+.++
T Consensus 68 ~~i~~~i~aIg~s~q~~~~v~~dd~~G~p--------------------l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~ 127 (512)
T PLN02295 68 HNVDSGLKAIGITNQRETTVAWSKSTGRP--------------------LYNAIVWMDSRTSSICRRLEKELSGGRKHFV 127 (512)
T ss_pred cccccceEEEEEecCcceEEEEECCCCCC--------------------cccceeccccchHHHHHHHHhhccchhHHHH
Confidence 55 8999999999999999 589998 6999999999999999999987532 34567
Q ss_pred HHhCCCCCCCChHHHHHHHhhcCchhHHhc----ccccchhhHHHHHHhC-----CceeeccchhccccccccCCCCccH
Q 015802 163 KLTGSRGYERFTGPQIRKLFQTQPGVYDDT----ERISVVSSFMASLLIG-----AYACIDETDAAGMNLMDIRQRVWSK 233 (400)
Q Consensus 163 ~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~----~~~~~~~dyl~~~LTG-----~~~~~d~s~As~tgl~d~~~~~W~~ 233 (400)
++||+++++.++++||+||++|+||+|+|+ .+|++++|||+|+||| +.+ +|+|+||+|++||+++++|++
T Consensus 128 ~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~-td~s~As~t~l~D~~~~~W~~ 206 (512)
T PLN02295 128 ETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHV-TDVTNASRTMLMNLKTLDWDK 206 (512)
T ss_pred HhhCCcCCcccHHHHHHHHHhcCHHHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEE-eeHHHhHHhhccCcccCcCCH
Confidence 999999999999999999999999999665 4899999999999999 566 999999999999999999999
Q ss_pred HHHHHcCCchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecC
Q 015802 234 IVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITD 313 (400)
Q Consensus 234 ~~l~~~g~~~~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~ 313 (400)
++++.+|++ +++||+++++++++|+|++++++ .|+||++|++|++|+++|+|+ ++|++++++||++++...++
T Consensus 207 ell~~~gi~-~~~lP~l~~~~~~~G~v~~~~a~-----~g~pV~~g~~D~~aa~~G~G~-~~g~~~~~~GTs~~i~~~~~ 279 (512)
T PLN02295 207 PTLEALGIP-AEILPKIVSNSEVIGTIAKGWPL-----AGVPIAGCLGDQHAAMLGQRC-RPGEAKSTYGTGCFILLNTG 279 (512)
T ss_pred HHHHHcCCC-HHHCCCcccCccceecccccccc-----CCCcEEEEechHHHHHhhCcC-CCCCeEEEEcccceeeeecC
Confidence 999999988 89999999999999999998765 499999999999999999999 99999999999998777666
Q ss_pred CC-CCCC--CceeecCCC---CCCceEEEEEEecchhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCCCeEEEeccCCCCC
Q 015802 314 DP-EPRL--EGHVFPNPV---DTKGYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGKMGFYYKEHEIL 386 (400)
Q Consensus 314 ~~-~~~~--~~~~~~~~~---~~~~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~ 386 (400)
.+ ..+. ....+++.. .++.|+.+++++++|.+++||++++.. .++.++++++++++ +++|++|+|||.|+|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~gl~f~P~l~G~r~ 358 (512)
T PLN02295 280 EEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVD-DTGGVYFVPAFSGLFA 358 (512)
T ss_pred CccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCCCCHHHHHHHHHhCC-CCCceEEeCcccCCCC
Confidence 53 3332 222333321 278899999999999999999998852 35778888887775 8889999999999999
Q ss_pred CCCC
Q 015802 387 PPLP 390 (400)
Q Consensus 387 P~~~ 390 (400)
|+|.
T Consensus 359 P~~~ 362 (512)
T PLN02295 359 PRWR 362 (512)
T ss_pred CcCC
Confidence 9874
No 9
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=2.4e-63 Score=512.54 Aligned_cols=340 Identities=26% Similarity=0.414 Sum_probs=313.1
Q ss_pred EEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCCCC
Q 015802 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 90 (400)
||||+|||++|++++|.+|+++++.+.+++...+.+ ++.+||++ +||+.++++++++.+. .++.+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~---g~~e~d~~----------~~~~~l~~~i~~~~~~~~~~~~~ 67 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHP---GWSEQDPE----------DWWDATEEAIKELLEQASEMGQD 67 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCC---CCeeeCHH----------HHHHHHHHHHHHHHHhcCCCccc
Confidence 689999999999999999999999999998666665 45788888 9999999999998864 55678
Q ss_pred EeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHhCCCCC
Q 015802 91 VTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGY 170 (400)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~tG~~~~ 170 (400)
|.+||+++|++|+|+||++|++ ++|.++|+|.|..++++++++.++ .+.+++.+|+...
T Consensus 68 I~gIgvs~~~~g~v~~d~~g~~--------------------l~~~i~W~D~r~~~~~~~l~~~~~-~~~~~~~~g~~~~ 126 (481)
T TIGR01312 68 IKGIGISGQMHGLVLLDANGEV--------------------LRPAILWNDTRTAQECEELEAELG-DERVLEITGNLAL 126 (481)
T ss_pred EEEEEEecCCceeEEECCCcCC--------------------CccchhhhccchHHHHHHHHHhcC-HhHHHHHHCCCCC
Confidence 9999999999999999999987 588899999999999999998874 5678899999999
Q ss_pred CCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcCCchhhhcCCc
Q 015802 171 ERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKL 250 (400)
Q Consensus 171 ~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g~~~~~~LP~l 250 (400)
+.++++||+|+++|+|++++++.+|++++|||.|+|||+.+ +|+|+|++||+||+++++|++++++.+|++ +++||+|
T Consensus 127 ~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~yi~~~LtG~~~-~d~t~as~tgl~d~~~~~W~~~~l~~~gi~-~~~Lp~i 204 (481)
T TIGR01312 127 PGFTAPKLLWVRKHEPEVFARIAKVMLPKDYLRYRLTGEYV-TEYSDASGTGWFDVAKRAWSKELLDALDLP-ESQLPEL 204 (481)
T ss_pred ccchHHHHHHHHHcChHHHHHhheeeCchHHHhhhhcCCee-eeHHHhhcccccccCCCCCCHHHHHHhCCC-HHHCCCc
Confidence 99999999999999999999999999999999999999987 999999999999999999999999999988 8999999
Q ss_pred ccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCCC--ceeecCCC
Q 015802 251 APAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLE--GHVFPNPV 328 (400)
Q Consensus 251 ~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~--~~~~~~~~ 328 (400)
+++++++|++++++|+++||++|+||++|++|++|+++|+|+.++|++++++|||+++..+++++..+.. ...++|.
T Consensus 205 v~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~- 283 (481)
T TIGR01312 205 IESSEKAGTVRPEVAARLGLSAGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHA- 283 (481)
T ss_pred cCCCCeeeeEcHHHHHHhCCCCCCeEEecchHHHHHhhCCCcccCCcEEEEecCceEEEEecCCcccCcccceeeeeee-
Confidence 9999999999999999999999999999999999999999999999999999999999999887766543 3345665
Q ss_pred CCCceEEEEEEecchhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCCC
Q 015802 329 DTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPL 389 (400)
Q Consensus 329 ~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~ 389 (400)
.++.|+.++++.++|.+++|+++.+...+|+.|+++++++++++++++|+|||.|+|+|+|
T Consensus 284 ~~~~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~ 344 (481)
T TIGR01312 284 LPGGWLPMGVTLSATSSLEWFRELFGKEDVEALNELAEQSPPGAEGVTFLPYLNGERTPHL 344 (481)
T ss_pred cCCceEEEeEehhhHHHHHHHHHHhCCCcHHHHHHHHhcCCCCCCCeEEecccccCCCCCC
Confidence 4789999999999999999999988545789999999999999999999999999999988
No 10
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=1.9e-63 Score=517.65 Aligned_cols=342 Identities=17% Similarity=0.190 Sum_probs=302.8
Q ss_pred ceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCC--CCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSEL--PHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 85 (400)
+|+||||+||||+|+++||.+|++++..+.+|+... +.+ |+.||||+ +||++++++++++.++
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~---g~~Eqd~~----------~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVP---GSMEFDLE----------KNWQLACQCIRQALQKAG 69 (520)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCC---CCeeECHH----------HHHHHHHHHHHHHHHHcC
Confidence 499999999999999999999999999998876432 233 46788888 9999999999998854
Q ss_pred CCCCCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCC-hHHHHHH
Q 015802 86 LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGG-ALELSKL 164 (400)
Q Consensus 86 ~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~-~~~~~~~ 164 (400)
.++.+|.+||+|+|++++++||++|+| +.+ +.|+|.|+.++++++++..+. .++++++
T Consensus 70 ~~~~~I~aI~~s~~~~~~v~~D~~g~p--------------------l~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~ 128 (520)
T PRK10939 70 IPASDIAAVSATSMREGIVLYDRNGTE--------------------IWA-CANVDARASREVSELKELHNNFEEEVYRC 128 (520)
T ss_pred CCccceEEEEEECCcccEEEECCCCCE--------------------eeC-CcCCCcccHHHHHHHHHhcChHHHHHHHH
Confidence 456789999999999999999999998 344 678999999999999987532 3578999
Q ss_pred hCCCCCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcCCchh
Q 015802 165 TGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLE 244 (400)
Q Consensus 165 tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g~~~~ 244 (400)
||.++ +.++++||+|+++|+||+|+|+++|++++|||+|||||+.+ +|+|+|++||+||+++++|++++++.+|++ +
T Consensus 129 tG~~~-~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~As~tgl~d~~~~~W~~~ll~~~gi~-~ 205 (520)
T PRK10939 129 SGQTL-ALGALPRLLWLAHHRPDIYRQAHTITMISDWIAYMLSGELA-VDPSNAGTTGLLDLVTRDWDPALLEMAGLR-A 205 (520)
T ss_pred hCCcC-CcchHHHHHHHHHcCcHHHHHhheEechhHhhhheeeCcee-eEhhhhhceeeeecCCCCCCHHHHHHcCCC-H
Confidence 99876 67899999999999999999999999999999999999987 999999999999999999999999999988 8
Q ss_pred hhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCCCc--e
Q 015802 245 EKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEG--H 322 (400)
Q Consensus 245 ~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~--~ 322 (400)
++||+++++++++|.|++++|+.+||++|+||++|++|++|+++|+|+.++|++++++||++++..+++++..++.. .
T Consensus 206 ~~lP~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~ 285 (520)
T PRK10939 206 DILPPVKETGTVLGHVTAKAAAETGLRAGTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPAPVTDPNMNIR 285 (520)
T ss_pred HHCCCCccCCceeeeecHHHHHhhCCCCCCcEEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEeccccccCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999988888876655432 2
Q ss_pred eecCCCCCCceEEEEEEecchhHHHHHHHHhcC-----------ccHHHHHHHHhcCCCCCCCeEEEeccCCCCC-CCCC
Q 015802 323 VFPNPVDTKGYMIMLVYKNASLTREDVRNRCAE-----------KSWDVFNKYLQQTPPLNGGKMGFYYKEHEIL-PPLP 390 (400)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~-----------~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~-P~~~ 390 (400)
.+++. .+|.|..++.++++|.+++||++++.. ..|+.|+++++++|++++|+ +|||.|++. |+|+
T Consensus 286 ~~~~~-~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~~~~ 362 (520)
T PRK10939 286 INPHV-IPGMVQAESISFFTGLTMRWFRDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFKSWY 362 (520)
T ss_pred eceee-eCCcceEeeeeccceeeeehHHhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCCCCc
Confidence 34443 488999999999999999999998742 34899999999999999887 599999976 5665
Q ss_pred C
Q 015802 391 G 391 (400)
Q Consensus 391 ~ 391 (400)
.
T Consensus 363 ~ 363 (520)
T PRK10939 363 H 363 (520)
T ss_pred c
Confidence 4
No 11
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=2e-63 Score=519.09 Aligned_cols=355 Identities=14% Similarity=0.136 Sum_probs=303.2
Q ss_pred ceEEEEEecCcceEEEEEc-CCCCEEEEEEeeccC-----CCCCCC---CCCceeeCCCCCCCcCCChhHHHHHHHHHHH
Q 015802 10 SLFLGFDSSTQSLKATVLD-SNLNIVASEQLQFDS-----ELPHYK---TKDGVYRDPSNNGRIVSPTLMWIEALDLMLQ 80 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d-~~G~~v~~~~~~~~~-----~~~~~~---~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (400)
.|+||||+||||+|+++|| .+|++++.++.+++. ..|+++ .+|++||||+ +||++++++++
T Consensus 1 ~~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~----------~~w~~~~~~~~ 70 (536)
T TIGR01234 1 AYAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPA----------DYIEVLEAAIP 70 (536)
T ss_pred CeEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHH----------HHHHHHHHHHH
Confidence 3799999999999999999 899999999999873 344421 0245666666 99999999999
Q ss_pred HHhhc--CCCCCEeEEEeecccceeeEecCCCcccc--ccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhC
Q 015802 81 KLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATIL--SSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVG 156 (400)
Q Consensus 81 ~l~~~--~~~~~I~aIgis~~~~~~v~~d~~g~~~~--~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~ 156 (400)
++.+. .++++|++||||+|+||++++|++|+|+. ++++ +.| ..|+|+|+|.|+.++++++++..+
T Consensus 71 ~~~~~~~~~~~~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~-~~~----------~~~~i~W~D~Ra~~~~~~l~~~~~ 139 (536)
T TIGR01234 71 TVLAELGVDPADVVGIGVDFTACTPAPIDSDGNPLCLLPEFA-ENP----------HAYFKLWKHHAAQEEADRINRLAH 139 (536)
T ss_pred HHHHHcCCCHHHEEEEEEecCcceeEEECCCCCEeecccccc-cCc----------ccceeeeccCCcHHHHHHHHHHhh
Confidence 98875 45678999999999999999999999842 1111 001 124999999999999999998752
Q ss_pred -ChHHHHHHhCCCCCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHH
Q 015802 157 -GALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIV 235 (400)
Q Consensus 157 -~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~ 235 (400)
..++++++||+++++.++++||+|+++|+||+|+|+++|++++|||+|+|||+.+ +|+|.++.+++++...+.|++++
T Consensus 140 ~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~a~~~~l~~~~w~~~~~~~ 218 (536)
T TIGR01234 140 APGEVDLSRYGGIISSEWFWAKILQITEEDPAIYQAADRWIELADWIVAQLSGDIR-RGRCTAGYKALWHESWGYPSASF 218 (536)
T ss_pred ccchhHHHhhCCccCchhHHHHHHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCcc-ccchhcccceeccccccCCCHHH
Confidence 1367889999999999999999999999999999999999999999999999987 99999999998877666669999
Q ss_pred HHHcCC------chhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceee
Q 015802 236 LEATAP------SLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVF 309 (400)
Q Consensus 236 l~~~g~------~~~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~ 309 (400)
++.+|+ + +++||+++++++++|.|++++|+++||++|+||++|++|++|+++|+|+.++|++++++|||+++.
T Consensus 219 l~~~g~~~~~~lp-~~~~p~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~ 297 (536)
T TIGR01234 219 FDELNPILNRHLP-DKLFTDIWTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHV 297 (536)
T ss_pred HHHhcchhhhhhh-hhcCCceecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEE
Confidence 999985 5 688999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eecCCCCCCCCceeecCC----CCCCceEEEEEEecchhHHHHHHHHhcC------------ccHHHHHHHHhcCCCCCC
Q 015802 310 GITDDPEPRLEGHVFPNP----VDTKGYMIMLVYKNASLTREDVRNRCAE------------KSWDVFNKYLQQTPPLNG 373 (400)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~~~~W~~~~~~~------------~~~~~l~~~a~~~~~g~~ 373 (400)
.+++++..... +++. ..++.|..+++++++|.+++||++++.. ..|+.|++.++++||+++
T Consensus 298 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~ 374 (536)
T TIGR01234 298 LIGDKQRAVPG---MCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEH 374 (536)
T ss_pred EecCccccCCc---eeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCC
Confidence 88776443222 2221 2367899999999999999999998731 238899999999999999
Q ss_pred CeEEEeccCCCCCCCCC
Q 015802 374 GKMGFYYKEHEILPPLP 390 (400)
Q Consensus 374 gl~~~P~l~G~r~P~~~ 390 (400)
||+|+|||.|+|+|+|.
T Consensus 375 gllflP~l~Ger~P~~d 391 (536)
T TIGR01234 375 GLVALDWFNGNRSPLVD 391 (536)
T ss_pred CeEecchhccCCCCCCC
Confidence 99999999999999874
No 12
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=3.7e-63 Score=508.87 Aligned_cols=335 Identities=17% Similarity=0.154 Sum_probs=294.9
Q ss_pred ceEEEEEecCcceEEEEEcCCCCEEEEEEeeccC--CCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCC
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDS--ELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~--~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (400)
.++||||+||||+|+++||.+|++++..+.+++. ..+.+ |+.||||+ +||++++++++++.+...
T Consensus 1 ~~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~---g~~eqd~~----------~~w~~~~~~~~~l~~~~~ 67 (465)
T TIGR02628 1 EVILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENN---DYHIWDLE----------AIWQKLADCCQQINSELT 67 (465)
T ss_pred CeEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCC---CceeeCHH----------HHHHHHHHHHHHHHhhcC
Confidence 3689999999999999999999999999988763 34444 46788887 999999999999985444
Q ss_pred CCCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHhCC
Q 015802 88 LSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGS 167 (400)
Q Consensus 88 ~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~tG~ 167 (400)
+++|++|||++|+++++++|++|+| ++|+|+|+|+|+.++++++.+.++ .++++++||+
T Consensus 68 ~~~I~aI~~s~~~~~~v~~D~~G~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~ 126 (465)
T TIGR02628 68 EKHIRGIAVTTFGVDGAPFDKQGNQ--------------------LYPIISWKCPRTAPVMDNIERLLD-AQRLYAINGI 126 (465)
T ss_pred hhceEEEEEeccccceEEECCCCCC--------------------ccccccccCcccHHHHHHHHHhhC-HHHHHHHhCC
Confidence 5679999999999999999999998 699999999999999999998764 5789999999
Q ss_pred CCCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcCCchhhhc
Q 015802 168 RGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKL 247 (400)
Q Consensus 168 ~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g~~~~~~L 247 (400)
++.+.++++||+|+++|+||+|+|+++|++++|||.|||||+.+ +|+|+||.|++||+++++|++++++.+|++ +++|
T Consensus 127 ~~~~~~~~~kl~wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~w~~ell~~~gi~-~~~l 204 (465)
T TIGR02628 127 GAYSFNTLYKLVWLKEHHPQLFERMHKFVFISSMITHRLTGEFT-TDITMAGTSMMTDLTQRNWSPQILQALGLS-RRLF 204 (465)
T ss_pred CccccchHHHHHHHHHhChHHHHHHHHhhCcHHHHHHHHhCCcc-cchhhhhcceeeecCcCCCCHHHHHHcCCC-HHHC
Confidence 99999999999999999999999999999999999999999987 999999999999999999999999999988 8999
Q ss_pred CCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCCCcee--ec
Q 015802 248 GKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHV--FP 325 (400)
Q Consensus 248 P~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~--~~ 325 (400)
|+++++++++|.|++++|+++||+.||||++|++|++|+++|+|+ .+|++++++||++++..+++++..+..... +.
T Consensus 205 P~l~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~ 283 (465)
T TIGR02628 205 PPLVEAGEQIGTLQNSAAAMLGLPVGVPVISAGHDTQFALFGSGA-EQNQPVLSSGTWEILMARSQQVDTSLLSQYAGST 283 (465)
T ss_pred CCcccCCccceeeCHHHHHHhCCCCCCCEEecCccHHHHHhccCC-CCCcEEEeccchhhheeccCcCCCCccccccccc
Confidence 999999999999999999999999999999999999999999998 889999999999998888887765543221 11
Q ss_pred C-C-CCCCceEEEEEEecchhHHHHHHHHhcC-----c-cHHHHHHHHhcCCCCCCCeE-EEeccC
Q 015802 326 N-P-VDTKGYMIMLVYKNASLTREDVRNRCAE-----K-SWDVFNKYLQQTPPLNGGKM-GFYYKE 382 (400)
Q Consensus 326 ~-~-~~~~~~~~~~~~~~~G~~~~W~~~~~~~-----~-~~~~l~~~a~~~~~g~~gl~-~~P~l~ 382 (400)
+ . ..++.|.......++| +++||++.++. . .|++|++.+++++|+++|++ |+|++.
T Consensus 284 ~~~~~~~g~~~~~~~~~~g~-~~~W~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~ 348 (465)
T TIGR02628 284 CELDSQAGLYNPAMQWLASG-VLEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDLL 348 (465)
T ss_pred cccccCCceeeehhhhhhhh-HHHHHHHHhcchhhccccHHHHHHHHHHhCCCCCCcceeecccCC
Confidence 1 1 1256776665555555 89999998752 1 26999999999999999999 999985
No 13
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=4.9e-63 Score=517.74 Aligned_cols=354 Identities=14% Similarity=0.126 Sum_probs=302.0
Q ss_pred ceEEEEEecCcceEEEEEcC-CCCEEEEEEeeccCC------CCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHH
Q 015802 10 SLFLGFDSSTQSLKATVLDS-NLNIVASEQLQFDSE------LPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKL 82 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~-~G~~v~~~~~~~~~~------~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l 82 (400)
+|+||||+||||+|+++||. +|+++++++.+++.. .|.+ |++||||+ +||++++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~---g~~Eqdp~----------~~w~~~~~~i~~~ 69 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPP---NQALQHPL----------DYIESLEAAIPAV 69 (548)
T ss_pred cEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCC---CceeeCHH----------HHHHHHHHHHHHH
Confidence 48999999999999999995 999999999998743 2333 34666666 9999999999998
Q ss_pred hhc--CCCCCEeEEEeecccceeeEecCCCccccc--cCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhC-C
Q 015802 83 SKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILS--SLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVG-G 157 (400)
Q Consensus 83 ~~~--~~~~~I~aIgis~~~~~~v~~d~~g~~~~~--~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~-~ 157 (400)
.+. .++.+|.+||||+|+++++++|++|+|+.+ +++ +.| ..|+|+|+|.|+.++++++++..+ .
T Consensus 70 ~~~~~~~~~~I~aIgis~~~~~~v~~D~~G~pl~~~~~~~-~~p----------~~~~i~W~D~Ra~~~~~~l~~~~~~~ 138 (548)
T PRK04123 70 LKEAGVDPAAVVGIGVDFTGSTPAPVDADGTPLALLPEFA-ENP----------HAMVKLWKDHTAQEEAEEINRLAHER 138 (548)
T ss_pred HHHcCCChhhEEEEEEecccceeEEECCCCCEeecccccc-cCc----------ccceeEeccCCHHHHHHHHHHHhccc
Confidence 764 556789999999999999999999998411 111 011 258999999999999999998753 1
Q ss_pred hHHHHHHh-CCCCCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhC-----CceeeccchhccccccccC-CCC
Q 015802 158 ALELSKLT-GSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIG-----AYACIDETDAAGMNLMDIR-QRV 230 (400)
Q Consensus 158 ~~~~~~~t-G~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG-----~~~~~d~s~As~tgl~d~~-~~~ 230 (400)
.+++++.+ |.++++.++++||+||++|+|++|+|+++|++++|||.|+||| +.+ +|.+.++.+++||.+ ++.
T Consensus 139 ~~~~~~~~~g~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~-~~~~~as~~~~~d~~~~~~ 217 (548)
T PRK04123 139 GEADLSRYIGGIYSSEWFWAKILHVLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIV-RSRCAAGHKALWHESWGGL 217 (548)
T ss_pred hhhHHHHhcCCccCcchHHHHHHHHHhhCHHHHHHHhHhccHHHHHHHHHhCCCCccccc-cchhhcccccccccccCCC
Confidence 24577655 9999999999999999999999999999999999999999999 665 899999999999999 566
Q ss_pred ccHHHHHHcC------CchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecc
Q 015802 231 WSKIVLEATA------PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGT 304 (400)
Q Consensus 231 W~~~~l~~~g------~~~~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GT 304 (400)
|++++++.+| ++ .++||+++++++++|.|++++|+++||++|+||++|+||++|+++|+|+ ++|++++++||
T Consensus 218 ~s~ell~~~g~~l~~~i~-~~llP~l~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~-~~g~~~~~~GT 295 (548)
T PRK04123 218 PSADFFDALDPLLARGLR-DKLFTETWTAGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGA-EPGTLVKVMGT 295 (548)
T ss_pred CCHHHHHHhccchhhhhH-hhcCCccccCCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcccCc-CCCcEEEEecC
Confidence 6999999996 66 7899999999999999999999999999999999999999999999999 99999999999
Q ss_pred cceeeeecCCCCCCCCce-eecCCCCCCceEEEEEEecchhHHHHHHHHhcC------------ccHHHHHHHHhcCCCC
Q 015802 305 SDTVFGITDDPEPRLEGH-VFPNPVDTKGYMIMLVYKNASLTREDVRNRCAE------------KSWDVFNKYLQQTPPL 371 (400)
Q Consensus 305 s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~------------~~~~~l~~~a~~~~~g 371 (400)
++++..+++++....... .+.....++.|.++++++++|.+++||++.+.. ..|++|++++++++++
T Consensus 296 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g 375 (548)
T PRK04123 296 STCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPG 375 (548)
T ss_pred ceEEEEecCCccccCceeecccCcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCC
Confidence 999999888764322211 111112467899999999999999999998731 3589999999999999
Q ss_pred CCCeEEEeccCCCCCCCCC
Q 015802 372 NGGKMGFYYKEHEILPPLP 390 (400)
Q Consensus 372 ~~gl~~~P~l~G~r~P~~~ 390 (400)
++|++|+|||.|+|+|+|.
T Consensus 376 ~~gl~f~P~l~Ger~P~~~ 394 (548)
T PRK04123 376 EHGLVALDWFNGRRTPLAD 394 (548)
T ss_pred CCceEEcccccCCCCCCCC
Confidence 9999999999999999874
No 14
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=3.6e-63 Score=517.33 Aligned_cols=349 Identities=14% Similarity=0.088 Sum_probs=298.1
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (400)
.+||||+||||+|+++||.+|+++++.+.+++...+.+ |+.||||+ +||++++++++++.+. .+.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~---g~~eqdp~----------~~~~~~~~~i~~~~~~~~~~~ 67 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSS---GLEGQSSV----------YIWQAICNCVKQVLAESKVDP 67 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCC---CcccCCHH----------HHHHHHHHHHHHHHHHcCCCh
Confidence 37999999999999999999999999999988777765 46788888 9999999999998864 456
Q ss_pred CCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHhCCC
Q 015802 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (400)
Q Consensus 89 ~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~tG~~ 168 (400)
++|++|||++| +++++||++|+|+....+. .+ .+|+|+|+|.|+.++++++++.. ++++++||++
T Consensus 68 ~~I~~Igis~~-~s~v~~D~~g~pl~~~~~~-~~----------~~~~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~~ 132 (541)
T TIGR01315 68 NSVKGIGFDAT-CSLVVLTHDGEPLPVSKNG-GA----------DQNIILWMDHRALAEAEKINATN---HNLLRYVGGK 132 (541)
T ss_pred hheEEEEeccc-ccceEEcCCCCeeecCCCC-Cc----------ccceeEeecCcHHHHHHHHHHHH---HHHHHHhCCe
Confidence 78999999998 9999999999984211111 01 37999999999999999998652 4788999999
Q ss_pred CCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccc---cCCCCccHHHHHHcCCchh-
Q 015802 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMD---IRQRVWSKIVLEATAPSLE- 244 (400)
Q Consensus 169 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d---~~~~~W~~~~l~~~g~~~~- 244 (400)
+++.++++||+|+++|+||+|+|+++|++++|||.|||||+.+ +|+++++.+++|| +++++|++++++.+|++ .
T Consensus 133 ~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~-~~ 210 (541)
T TIGR01315 133 MSVEMEIPKVLWLKNNMPPELFARCKFFDLTDFLTWRATGKEI-RSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLG-EL 210 (541)
T ss_pred eCcchhHHHHHHHHHhChHHHHHhhhhcchhhhheeeeecchh-HhHhHHhHhhhccccccccCCCCHHHHHHcCCh-hh
Confidence 9999999999999999999999999999999999999999987 9999999888898 69999999999999985 3
Q ss_pred --hhc----CCcccCCccccc-cCHHHHHHcCCCCCCeEEecCCchHHhhhcccC---CCCC-------cEEEEecccce
Q 015802 245 --EKL----GKLAPAHAVAGC-IAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTL---STSG-------DLAISLGTSDT 307 (400)
Q Consensus 245 --~~L----P~l~~~~~~~G~-l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~---~~~g-------~~~~s~GTs~~ 307 (400)
++| |+++++++++|+ |++++|+++||++||||++|++|++|+++|+|+ .++| ++++++|||++
T Consensus 211 ~~~~l~~~lp~i~~~~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~ 290 (541)
T TIGR01315 211 VTDNFIRMGGSWMSPGELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTC 290 (541)
T ss_pred hhccccccCCcccCCCcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceE
Confidence 234 999999999999 999999999999999999999999999999965 6777 88999999999
Q ss_pred eeeecCCCCCCCCcee-e-cCCCCCCceEEEEEEecchhHHHHHHHHhcC-------------ccHHHHHHH----HhcC
Q 015802 308 VFGITDDPEPRLEGHV-F-PNPVDTKGYMIMLVYKNASLTREDVRNRCAE-------------KSWDVFNKY----LQQT 368 (400)
Q Consensus 308 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~-------------~~~~~l~~~----a~~~ 368 (400)
+..+++++..++.... + ++ ..++.|+.+++++++|.+++||++++.. ..|+.|++. ++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 369 (541)
T TIGR01315 291 HMAMTKGPVFVPGVWGPYRDA-LIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKT 369 (541)
T ss_pred EEEecCCCccCCceeecccCc-cCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhc
Confidence 9988887765554321 2 33 3478999999999999999999997531 236555443 5555
Q ss_pred CCC-----CCCeEEEeccCCCCCCCCC
Q 015802 369 PPL-----NGGKMGFYYKEHEILPPLP 390 (400)
Q Consensus 369 ~~g-----~~gl~~~P~l~G~r~P~~~ 390 (400)
+|+ ++|++|+|||.|+|+|+|.
T Consensus 370 ~~~~~~~~~~gl~flP~l~G~r~P~~d 396 (541)
T TIGR01315 370 NAPSISYLVRHFHVYPDLWGNRSPIAD 396 (541)
T ss_pred ccCccccCCCceEEccccccCcCCCCC
Confidence 555 4899999999999999873
No 15
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=4.4e-62 Score=504.43 Aligned_cols=337 Identities=21% Similarity=0.215 Sum_probs=298.4
Q ss_pred ceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CC
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 87 (400)
+|+||||+|||++|++++|.+|++++..+.+++...+.+ |+.|||++ +||+.++++++++.++ .+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~---g~~e~d~~----------~~~~~i~~~i~~~~~~~~~~ 67 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKP---GWVEHDPM----------EIWESVLSCIAEALAKAGIK 67 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCC---CcEeeCHH----------HHHHHHHHHHHHHHHHcCCC
Confidence 479999999999999999999999999999988766665 46888888 9999999999998764 45
Q ss_pred CCCEeEEEeecccceeeEecCC-CccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHhC
Q 015802 88 LSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTG 166 (400)
Q Consensus 88 ~~~I~aIgis~~~~~~v~~d~~-g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~tG 166 (400)
+++|.+|||++|+++++++|++ |+| ++|+|+|+|.|+.++++++++.++ .++++++||
T Consensus 68 ~~~i~aIgis~~~~~~v~~D~~~G~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG 126 (493)
T TIGR01311 68 PDDIAAIGITNQRETTVVWDKATGKP--------------------LYNAIVWQDRRTASICEELKAEGY-GEFIREKTG 126 (493)
T ss_pred hhheeEEEEecCcceEEEEECCCCcC--------------------cccceeecccchHHHHHHHHHhcc-hHHHHHHhC
Confidence 6789999999999999999976 998 699999999999999999998874 468999999
Q ss_pred CCCCCCChHHHHHHHhhcCchhHHhccc----ccchhhHHHHHHhC--CceeeccchhccccccccCCCCccHHHHHHcC
Q 015802 167 SRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAGMNLMDIRQRVWSKIVLEATA 240 (400)
Q Consensus 167 ~~~~~~~~~~kl~Wl~~~~pe~~~~~~~----~~~~~dyl~~~LTG--~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g 240 (400)
.++++.++++||+|+|+|+||+|+|+++ |++++|||.||||| +.+ +|+|+|+++++||+++++|++++++.+|
T Consensus 127 ~~~~~~~~~~kl~wlk~~~Pe~~~~~~~~~~~~~~~~dyl~~~LtG~~~~~-~d~s~As~t~l~d~~~~~W~~~~l~~~g 205 (493)
T TIGR01311 127 LPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLTGGKVHV-TDVTNASRTMLFNIHTLDWDDELLELFG 205 (493)
T ss_pred CcCCccchHHHHHHHHhcCHHHHHHhhcCCeEEECHhHhhhhhccCCceEE-eccchhhhhhcccccccccCHHHHHHcC
Confidence 9999999999999999999999998864 78899999999999 876 9999999999999999999999999999
Q ss_pred CchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecC-CCCCCC
Q 015802 241 PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITD-DPEPRL 319 (400)
Q Consensus 241 ~~~~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~ 319 (400)
++ +++||+++++++++|+++++ |++.||||++|++|++|+++|+|+.++|++++++||++++...+. .+..++
T Consensus 206 i~-~~~lP~l~~~g~~~G~v~~~-----~l~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~ 279 (493)
T TIGR01311 206 IP-REILPEVRSSSEVYGYTDPG-----LLGAEIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISK 279 (493)
T ss_pred CC-HHHCCCccCCccceeccccc-----ccCCCceEEEecccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCC
Confidence 88 89999999999999999987 677999999999999999999999999999999999998666554 344333
Q ss_pred --CceeecCCCCCC---ceEEEEEEecchhHHHHHHHHhcC-ccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCCC
Q 015802 320 --EGHVFPNPVDTK---GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPL 389 (400)
Q Consensus 320 --~~~~~~~~~~~~---~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~ 389 (400)
....+++.. ++ .|+.++++.++|.+++||++.+.. ..++++++++++++ +++|++|+|||.|+|+|+|
T Consensus 280 ~~~~~~~~~~~-~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~g~~~~P~l~G~r~P~~ 353 (493)
T TIGR01311 280 HGLLTTVAYQL-GGKKPVYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVE-DNGGVYFVPAFTGLGAPYW 353 (493)
T ss_pred CCceEEEEEec-CCCCceEEEEeehhhhHHHHHHHHHHhCCCCCHHHHHHHHhcCC-CCCCEEEeCcccCCCCCcC
Confidence 233455543 33 499999999999999999998853 46778888887765 8899999999999999985
No 16
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=2e-59 Score=460.10 Aligned_cols=343 Identities=19% Similarity=0.210 Sum_probs=303.6
Q ss_pred CceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--C
Q 015802 9 DSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--L 86 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 86 (400)
++|+++||.||||+|+++||.+|++++.++.++...+|+|| |+||||. ++|+++..++++++.. +
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~G---WVEhDp~----------eIw~~~~~~l~~a~~~~~i 70 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPG---WVEHDPL----------EIWASVRSVLKEALAKAGI 70 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCC---ccccCHH----------HHHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999988899985 6999999 9999999999997653 7
Q ss_pred CCCCEeEEEeecccceeeEecC-CCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHh
Q 015802 87 DLSKVTAVSGSGQQHGSVYWKK-GSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLT 165 (400)
Q Consensus 87 ~~~~I~aIgis~~~~~~v~~d~-~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~t 165 (400)
.+.+|.+|||+.|+++.|+||+ .|+| ++|+|.|+|.|+.+.|+++++. +..+.+.++|
T Consensus 71 ~~~~iaaIGITNQRETtvvWdk~tG~P--------------------i~naIvWQdrRTa~~c~~L~~~-g~~~~i~~kT 129 (499)
T COG0554 71 KPGEIAAIGITNQRETTVVWDKETGKP--------------------IYNAIVWQDRRTADICEELKAD-GYEERIREKT 129 (499)
T ss_pred CccceEEEEeeccceeEEEEeCCCCCC--------------------cccceeeeccchHHHHHHHHhc-chhhhhhhhc
Confidence 8899999999999999999998 5665 6999999999999999999998 5567789999
Q ss_pred CCCCCCCChHHHHHHHhhcCchhHHhcc----cccchhhHHHHHHhC--CceeeccchhccccccccCCCCccHHHHHHc
Q 015802 166 GSRGYERFTGPQIRKLFQTQPGVYDDTE----RISVVSSFMASLLIG--AYACIDETDAAGMNLMDIRQRVWSKIVLEAT 239 (400)
Q Consensus 166 G~~~~~~~~~~kl~Wl~~~~pe~~~~~~----~~~~~~dyl~~~LTG--~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~ 239 (400)
|..+.|.|+..|++|+.+|.|...+|++ .|.++..||.|+||| ..+ ||+|+||+|+|||+.+.+||+++|+.+
T Consensus 130 GL~~dpYFSatKi~WiLdnv~g~r~~ae~Gel~fGTiDtWLiw~LTgg~~h~-TD~sNASRT~L~ni~~l~WD~elL~il 208 (499)
T COG0554 130 GLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWKLTGGKVHV-TDYSNASRTMLFNIHSLEWDDELLELL 208 (499)
T ss_pred CCccCCCccchhhhHHHhhChhhhhHhhcCCeEEecchhhheeeccCCceec-cccchhHHHhcccccccCCCHHHHHHh
Confidence 9999999999999999999998888884 488999999999999 444 999999999999999999999999999
Q ss_pred CCchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCC-CCC
Q 015802 240 APSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDP-EPR 318 (400)
Q Consensus 240 g~~~~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~-~~~ 318 (400)
|++ +++||++.++.++.|.... -.+...+||..-.||||||++|.||++||++..+.||.+++.+.+.+. +..
T Consensus 209 ~Ip-~~~LPev~~ss~~~G~t~~-----~~~g~~vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S 282 (499)
T COG0554 209 GIP-RSMLPEVRPSSEIYGVTGI-----GFLGAEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRS 282 (499)
T ss_pred CCC-hHhCccccccccccccccc-----cccCCceeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCccccC
Confidence 987 8999999999999998765 234578999999999999999999999999999999999999999854 444
Q ss_pred CC--ceeecCCCC-CCceEEEEEEecchhHHHHHHHHhc-CccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCCCCCCe
Q 015802 319 LE--GHVFPNPVD-TKGYMIMLVYKNASLTREDVRNRCA-EKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPGVL 393 (400)
Q Consensus 319 ~~--~~~~~~~~~-~~~~~~~~~~~~~G~~~~W~~~~~~-~~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~ 393 (400)
.. .-+..+.+. +-.|.+||++..+|.+++|+|+.+. .++.++.+.+|.+++ .++|++|.|.|.|-.+|||....
T Consensus 283 ~~~LLtTIa~~l~gk~~YALEGsif~aGaavqWLrd~L~~i~~a~~~e~~A~~~~-~~~gVy~VPAFtGLgAPyWd~~a 360 (499)
T COG0554 283 ENGLLTTIAWGLDGKVTYALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESVE-DNGGVYFVPAFTGLGAPYWDSDA 360 (499)
T ss_pred CCCceeEEEeccCCeEEEEEecceeehhhHHHHHHHhcCccCchhHHHHHHhccC-CCCceEEEcccccCCCCCcCccc
Confidence 33 233444332 3379999999999999999999774 366777888888776 46899999999999999998743
No 17
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=2.3e-55 Score=414.93 Aligned_cols=243 Identities=26% Similarity=0.390 Sum_probs=223.5
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (400)
|+||||+||||+|++++|.+|++++..+.+++...+.+ ++.||||+ +||+.++.+++++.+. .++
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~---g~~e~d~~----------~~~~~~~~~~~~~~~~~~~~~ 67 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEP---GWAEQDPD----------EIWEAICEALKELLSQAGIDP 67 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSST---TEEEE-HH----------HHHHHHHHHHHHHHHHCTSCG
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccc---cccccChH----------HHHHHHHHHHHHHHhhcCccc
Confidence 79999999999999999999999999999999877765 47888988 9999999999999875 567
Q ss_pred CCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHhCCC
Q 015802 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (400)
Q Consensus 89 ~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~tG~~ 168 (400)
.+|++|+||+|+++++++|++|+| ++|+|+|+|+|+.++++++++.. ..+++++.||.+
T Consensus 68 ~~I~aI~is~~~~~~v~~D~~~~p--------------------l~~~i~w~D~R~~~~~~~l~~~~-~~~~~~~~tG~~ 126 (245)
T PF00370_consen 68 EQIKAIGISGQGHGLVLLDKDGKP--------------------LRPAILWMDTRAAEEAEELNEEG-SPEEIYEKTGLP 126 (245)
T ss_dssp GGEEEEEEEE-SSEEEEEETTSSB--------------------SSCEE-TT-CTTHHHHHHHHHHT-HHHHHHHHHSS-
T ss_pred ceeEEEEeccccCCcceecccccc--------------------ccccccccccchhhHHHHHHhhc-Ccceeeeecccc
Confidence 899999999999999999999998 69999999999999999999864 468899999999
Q ss_pred CCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcCCchhhhcC
Q 015802 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLG 248 (400)
Q Consensus 169 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g~~~~~~LP 248 (400)
+++.++++|++||++|+|++|+|+++|++++|||.|+|||+.+ +|+|+|+++|+||+++++|++++++.+|++ .++||
T Consensus 127 ~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~dyl~~~LtG~~~-~d~s~as~tgl~d~~~~~w~~~~l~~~gi~-~~~lP 204 (245)
T PF00370_consen 127 LSPGYPLAKLLWLKENEPEIFEKAAKFLTLSDYLAYKLTGRAA-TDYSNASRTGLYDIRTGQWDEELLEALGIP-EELLP 204 (245)
T ss_dssp SSTTSHHHHHHHHHHHSHHHHHHHHEEEEHHHHHHHHHHSC-E-EEHHHHCTSSSEETTTTEE-HHHHHHTTSG-GGGSC
T ss_pred ccccchHHHHHHHHHhCchhhhhhhhcccHHHHHHhhcccccc-ccccchhccccccccccccCHHHHHhhCCC-hhhCC
Confidence 9999999999999999999999999999999999999999987 999999999999999999999999999988 88999
Q ss_pred CcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhc
Q 015802 249 KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (400)
Q Consensus 249 ~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g 289 (400)
+|+++++++|++++++|+++||++|+||++|++|++|+++|
T Consensus 205 ~i~~~g~~~G~~~~~~a~~~Gl~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 205 EIVPPGEIIGTLTPEAAKELGLPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp EEE-TTSEEEEEEHHHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred cEecCCCeeEEECHHHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence 99999999999999999999999999999999999999987
No 18
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=1.8e-54 Score=443.37 Aligned_cols=326 Identities=13% Similarity=0.084 Sum_probs=269.6
Q ss_pred EEEEecCcceEEEEEcCC---CCEE-EEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCC
Q 015802 13 LGFDSSTQSLKATVLDSN---LNIV-ASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDL 88 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~---G~~v-~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (400)
||||+|||++|++++|.+ |+++ +....+++...+++ ++.++|++ .||+++.++++++.+. .
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~----------~~~~~~~~~l~~~~~~--~ 65 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQN---GHECWDID----------ALEQEIRLGLNKVDAE--G 65 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeEC---CEEEEehH----------HHHHHHHHHHHHHhcc--C
Confidence 589999999999999997 5666 45555554434443 35667776 9999999999998753 3
Q ss_pred CCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHhCCC
Q 015802 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (400)
Q Consensus 89 ~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~tG~~ 168 (400)
.+|++||||+|++++|++|++|+| ++|+|+|+|+|+.++++++++.+ +.++++++||++
T Consensus 66 ~~i~~Igis~q~~~~v~~D~~G~~--------------------l~p~i~w~D~R~~~~~~~l~~~~-~~~~~~~~tG~~ 124 (454)
T TIGR02627 66 IAPDSIGIDTWGVDFVLLDQNGQR--------------------VGDPVSYRDSRTDGVMAQVQSEL-GKEAIYQRTGIQ 124 (454)
T ss_pred CCceEEEEeccceeEEEEcCCCCC--------------------ccCceecCCCCCHHHHHHHHhhc-CHHHHHHHhCCC
Confidence 469999999999999999999998 69999999999999999999886 467899999999
Q ss_pred CCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcCCchhhhcC
Q 015802 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLG 248 (400)
Q Consensus 169 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g~~~~~~LP 248 (400)
+.+.++++||+|+++|+|++|+|+++|++++|||+|||||+.+ +|+|+||+|++||+++++|++++++.+|++ +++||
T Consensus 125 ~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~~ll~~~gi~-~~~lP 202 (454)
T TIGR02627 125 FLPFNTLYQLRALTEQQPDLLEKVAHFLLIPDYLNYRLTGKKV-WEYTNATTTQLVNINTDDWDEDLLAYLGVP-AAWFG 202 (454)
T ss_pred cCCccHHHHHHHHHHhChhHHHHHHHhCCHHHHHHHheeCCce-eeeehhhhcccccCCCCCcCHHHHHHcCCC-HHHcC
Confidence 9999999999999999999999999999999999999999997 999999999999999999999999999988 89999
Q ss_pred CcccCCccccccCHHHHHHcCCCCCCeEEe-cCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCCCce--eec
Q 015802 249 KLAPAHAVAGCIAPYFVERFHFNKNCLVVQ-WSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGH--VFP 325 (400)
Q Consensus 249 ~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~-g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~--~~~ 325 (400)
+++++++++|.+.+ .|+ .++||++ |+||++|+++|+|+.++|++++++|||+++...++++..+.... .+.
T Consensus 203 ~l~~~~~~~G~~~~-----~gl-~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~ 276 (454)
T TIGR02627 203 RPTHPGNVIGLWEC-----PQG-NQIPVVAVATHDTASAVVAAPLQGENAAYLSSGTWSLMGFESQTPITNEQALAANIT 276 (454)
T ss_pred CccCCCCeeEEeec-----ccC-CCCCEEEECCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccCCCCCCCHHHHHhccc
Confidence 99999999999764 467 7999998 88999999999999999999999999999888888776654321 121
Q ss_pred C-CCCCCceEEEEEEecchhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCCC
Q 015802 326 N-PVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPL 389 (400)
Q Consensus 326 ~-~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~ 389 (400)
+ ...++.|...++.. ++..++|+.+......|++|.+.+..+|+.+ |++.|++.|+|
T Consensus 277 ~~~~~~~~~~~~~~~~-g~W~~~~~~~~~~~~~~~~l~~~a~~~p~~~------g~~~~~~~~~~ 334 (454)
T TIGR02627 277 NEGGADGRYRVLKNIM-GLWLLQRVCRERDINDLPALIEQAQALPAFK------SIINPNDDRFI 334 (454)
T ss_pred cccccccEEEeecchh-hhHHHHHHHhhhccccHHHHHHHhcCCCCCC------eeeCCCccccc
Confidence 1 11356676665443 5544444433222346888888887776533 66688888875
No 19
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-52 Score=404.76 Aligned_cols=392 Identities=59% Similarity=0.976 Sum_probs=373.3
Q ss_pred CCCCCceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhh
Q 015802 5 SLPKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (400)
Q Consensus 5 ~~~~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (400)
..+.+..+||+|++|+.+||+++|++++++.++.+.++...|+.++.+++..+.. ...+++|+.+|.+++.-+++++.+
T Consensus 4 ~~~~~~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~-~~~i~~PV~MWveAlDlll~kl~~ 82 (545)
T KOG2531|consen 4 IKQPDRSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGG-GETITSPVLMWVEALDLLLDKLRE 82 (545)
T ss_pred ccCCCceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCC-CcEEeccHHHHHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999999999999999998888888885 568999999999999999999998
Q ss_pred c-CCCCCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHH
Q 015802 85 S-LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSK 163 (400)
Q Consensus 85 ~-~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~ 163 (400)
+ .+..+|.||+-++|+||-|.|.+.+.-.+.+||++..|.++++.+|++....+|+|..+..+|+++...+||+.++.+
T Consensus 83 ~~~d~~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~ 162 (545)
T KOG2531|consen 83 AGFDLSKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAK 162 (545)
T ss_pred cCCCHHHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHH
Confidence 7 788999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhccccccccCCCCccHHHHHHcCCch
Q 015802 164 LTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSL 243 (400)
Q Consensus 164 ~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~g~~~ 243 (400)
+||+..+.-|+.++++-+.+.+||.|+++.++-.+++|++..|-|..+++|+|++|++.|||++++.|+.++|+++.+++
T Consensus 163 LTGSRAy~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgsGMNL~dIr~k~ws~~~L~~~apdL 242 (545)
T KOG2531|consen 163 LTGSRAYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGSGMNLLDIRKKKWSKALLDACAPDL 242 (545)
T ss_pred hhcchhhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccceecccccCchHHHHhhhhhhHHHHhhhChhH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999888
Q ss_pred hhhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCCCcee
Q 015802 244 EEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHV 323 (400)
Q Consensus 244 ~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~ 323 (400)
+++|...+++..+.|+|++..-+++|++++|.|++-.||+++++.|.-. +++++.+|+|||..+..+++++.+.+.++.
T Consensus 243 ~~KL~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~l-~~~dl~iSLGTSdTv~m~t~~~~p~~egHv 321 (545)
T KOG2531|consen 243 EEKLGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLPL-RPGDLLISLGTSDTVFMVTKEYHPSPEGHV 321 (545)
T ss_pred HHHhCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCccc-cCCceEEEecCcceEEEEcCCCCCCCCcce
Confidence 9999999999999999999999999999999999999999999999877 679999999999999999999999999999
Q ss_pred ecCCCCCCceEEEEEEecchhHHHHHHHHhcCccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCCCCCCeeeeecC
Q 015802 324 FPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPGVLFHYFPF 399 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~~~~~~~ 399 (400)
|||++.+++|+.+.|..||+.+.+-+|+.....+|+.+++.+.+.++|.+|.+-+-|=.+|..|.-|. |.+||++
T Consensus 322 f~hP~~~~~YM~mlCfkNgSL~RE~ir~~~~~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIvP~~~~-G~~R~~~ 396 (545)
T KOG2531|consen 322 FCHPTDPNHYMGMLCFKNGSLTRERIRNESANGSWDKFNEILDSTPSGNNGNLGVYFPEREIVPSVPK-GTLRFIF 396 (545)
T ss_pred eccCCCccceEEEEEecCChHHHHHHhhcccCCCHHHHHHHhccCcCCCCCceeEecccccccCCCCc-cceEEEe
Confidence 99999999999999999999999999998888899999999999999999998777777999998898 9999985
No 20
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=1.2e-52 Score=417.63 Aligned_cols=351 Identities=16% Similarity=0.184 Sum_probs=297.4
Q ss_pred CceEEEEEecCcceEEEEEcCC-CCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--
Q 015802 9 DSLFLGFDSSTQSLKATVLDSN-LNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~~-G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 85 (400)
++|+||||+||.|.|+++||.. |++++.+.++|+...+.. ...||++. +||++++.+++.+++.
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~---~~~~q~s~----------d~~~av~~aVr~~v~~ag 68 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGS---NLAEQHSR----------DYWEAVCAAVRDVVAKAG 68 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCc---cccccCHH----------HHHHHHHHHHHHHHHHcC
Confidence 5799999999999999999985 999999999998765543 23455555 9999999999998774
Q ss_pred CCCCCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHHHHHHh
Q 015802 86 LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLT 165 (400)
Q Consensus 86 ~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~t 165 (400)
+++.+|++|||+.. +|+|++|++|+|+- +.+ .++.+ .++|+|+|+|+.+++++++... .+++.+.
T Consensus 69 v~~~~V~gIGvDaT-cSlvv~d~~g~pl~--v~~------~~~~~---~~vilWmDHrA~~EAe~in~~~---~~~L~~~ 133 (544)
T COG1069 69 VDPADVVGIGVDAT-CSLVVIDRDGNPLA--VLP------EFPNN---PNVILWMDHRAVEEAEEINATC---HPVLDYY 133 (544)
T ss_pred CChhHeeEEEEcce-eeeEEECCCCCeec--cCC------CCCCC---CceEEeccchHHHHHHHHHhhc---hHHHHhh
Confidence 88899999999998 99999999999851 111 11221 3699999999999999999973 5688999
Q ss_pred CCCCCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhcccccccc-CCCCccHHHHHHcCCch-
Q 015802 166 GSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDI-RQRVWSKIVLEATAPSL- 243 (400)
Q Consensus 166 G~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~d~-~~~~W~~~~l~~~g~~~- 243 (400)
|..++|.|..+|++|+++|.|++|+|+.+|+.+.|||.|+|||..+.+..|.-+.. .|.. +.+.|++++++++|++.
T Consensus 134 GG~~SpEm~~PKlmwl~~~~p~~~~~a~~~fdl~D~l~~~ltG~~~Rs~Ct~~~Kw-~~~~~~~~~~~~~~f~~ig~~~l 212 (544)
T COG1069 134 GGKISPEMMIPKLMWLKREAPAVWERAAHIFDLADWLTWKLTGSIARSRCTAGCKW-NWLEHEGGLWSADFFDKIGLDDL 212 (544)
T ss_pred CCccChhhhHHHHHHHHhhChHHHHHhhhhhhHHHHHHHHhhcchhhccccceeee-eeeccccCCCCHHHHHhcCchhh
Confidence 99999999999999999999999999999999999999999997654555555555 4666 66779999999999532
Q ss_pred h---hhcC-CcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCCCCCC
Q 015802 244 E---EKLG-KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRL 319 (400)
Q Consensus 244 ~---~~LP-~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~ 319 (400)
. ..|| ++++.|+.+|.+++++|+++||++||-|..|..|..|+++|++.-.++.++..+|||+|.++.++++...+
T Consensus 213 ~~~~~~l~~~i~~~g~~vg~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~~~~~v~ 292 (544)
T COG1069 213 RELDSKLPEDIVPAGEPVGGLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSEKPRFVP 292 (544)
T ss_pred hcccccCCcccccCCccccccCHHHHHHhCCCCCcEEeccceeccccccccccCCCCeEEEEeccceEEEEecCCceecC
Confidence 2 3366 58899999999999999999999999999999999999999998889999999999999999999886655
Q ss_pred Cc-eeecCCCCCCceEEEEEEecchhHHHHHHHHhc-------------C-------ccHHHHHHHHhcCCCCCCCeEEE
Q 015802 320 EG-HVFPNPVDTKGYMIMLVYKNASLTREDVRNRCA-------------E-------KSWDVFNKYLQQTPPLNGGKMGF 378 (400)
Q Consensus 320 ~~-~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~-------------~-------~~~~~l~~~a~~~~~g~~gl~~~ 378 (400)
.+ .+|...+.||.|+++++++..|..++||.+.+. . ...+.|.+.+.+.+|+.++++++
T Consensus 293 GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l 372 (544)
T COG1069 293 GVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVL 372 (544)
T ss_pred ccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEec
Confidence 44 234444579999999999999999999999851 0 12345666677788999999999
Q ss_pred eccCCCCCCC
Q 015802 379 YYKEHEILPP 388 (400)
Q Consensus 379 P~l~G~r~P~ 388 (400)
|+|+|+|+|+
T Consensus 373 ~~f~GNRsP~ 382 (544)
T COG1069 373 DWFNGNRSPL 382 (544)
T ss_pred ccccCCcCCC
Confidence 9999999997
No 21
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=3.9e-48 Score=397.75 Aligned_cols=282 Identities=15% Similarity=0.096 Sum_probs=244.1
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCCCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCCh
Q 015802 65 VSPTLMWIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSST 144 (400)
Q Consensus 65 ~~~~~~~~~~~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~ 144 (400)
+|++..||+++.++++++.. +..+|.+||||+|+++++++|++|+| ++|+|+|+|.|+
T Consensus 32 ~~d~~~~~~~i~~~l~~~~~--~~~~I~~Igis~q~~~~v~lD~~G~p--------------------L~pai~w~D~Ra 89 (471)
T PRK10640 32 TWDVDSLESAIRLGLNKVCE--EGIRIDSIGIDTWGVDYVLLDKQGQR--------------------VGLPVSYRDSRT 89 (471)
T ss_pred EECHHHHHHHHHHHHHHHhh--cCCCccEEEEcCCcccEEEECCCCCC--------------------cCCceeccCCCC
Confidence 33334999999999998765 25679999999999999999999998 699999999999
Q ss_pred HHHHHHHHHHhCChHHHHHHhCCCCCCCChHHHHHHHhhcCchhHHhcccccchhhHHHHHHhCCceeeccchhcccccc
Q 015802 145 TAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLM 224 (400)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~~d~s~As~tgl~ 224 (400)
.++++++.+.+ +.++++++||+++++.++++||+|+++|+|++|+|+++|++++|||+|||||+.+ +|+|+||+|++|
T Consensus 90 ~~~~~~l~~~~-~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~as~t~l~ 167 (471)
T PRK10640 90 DGVMAQAQQQL-GKRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYRLTGKMN-WEYTNATTTQLV 167 (471)
T ss_pred HHHHHHHHHhc-CHHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHHHhCCcc-eeecHhhhcccc
Confidence 99999999887 4578999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred ccCCCCccHHHHHHcCCchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEe-cCCchHHhhhcccCCCCCcEEEEec
Q 015802 225 DIRQRVWSKIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQ-WSGDNPNSLAGLTLSTSGDLAISLG 303 (400)
Q Consensus 225 d~~~~~W~~~~l~~~g~~~~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~-g~~D~~aa~~g~g~~~~g~~~~s~G 303 (400)
|+++++|++++++.+|++ .++||+++++++++|.+++++ | .|+||++ |+||++|+++|+|+.++|++++|+|
T Consensus 168 d~~~~~W~~ell~~~Gi~-~~~LP~lv~~~~~~G~v~~~~----g--~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~G 240 (471)
T PRK10640 168 NINSDDWDESLLAWSGAP-KAWFGRPTHPGNVIGHWICPQ----G--NEIPVVAVASHDTASAVIASPLNDSDAAYLSSG 240 (471)
T ss_pred CCCcCCcCHHHHHHcCCC-HHHcCCCcCCCccceeeeccc----C--CCCCEEEeCCCcHHHHhhccCCCCCCeEEEEec
Confidence 999999999999999988 899999999999999987653 5 6899998 6899999999999999999999999
Q ss_pred ccceeeeecCCCCCCCCc--eeecC-CCCCCceEEEEEEecchhHHHHHHHHhc----CccHHHHHHHHhcCCCCCCCeE
Q 015802 304 TSDTVFGITDDPEPRLEG--HVFPN-PVDTKGYMIMLVYKNASLTREDVRNRCA----EKSWDVFNKYLQQTPPLNGGKM 376 (400)
Q Consensus 304 Ts~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~G~~~~W~~~~~~----~~~~~~l~~~a~~~~~g~~gl~ 376 (400)
|++++..++++|..+... ..+.+ ...++.|.....+. | +|+++++. ...|+++.+++++++ +++|++
T Consensus 241 T~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~--g---~W~~~~~~~~~~~~~~~~l~~~a~~~~-g~~gli 314 (471)
T PRK10640 241 TWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIM--G---LWLLQRVLQERQITDLPALIAATAALP-ACRFLI 314 (471)
T ss_pred cHhhhheecCCCcCCHHHHHhccCccCCCCceEEEecchh--H---HHHHHHHHHHhccCCHHHHHHHHHhCC-CCCcee
Confidence 999999998887765432 11111 12367776665432 3 89999874 246888888888876 889987
Q ss_pred EEeccCCCCC
Q 015802 377 GFYYKEHEIL 386 (400)
Q Consensus 377 ~~P~l~G~r~ 386 (400)
+| .|+|.
T Consensus 315 -~p--~ger~ 321 (471)
T PRK10640 315 -NP--NDDRF 321 (471)
T ss_pred -CC--Ccccc
Confidence 58 79996
No 22
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=362.45 Aligned_cols=346 Identities=19% Similarity=0.215 Sum_probs=286.8
Q ss_pred CceEEEEEecCcceEEEEEc-CCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--
Q 015802 9 DSLFLGFDSSTQSLKATVLD-SNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d-~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 85 (400)
+++++|||+||||+|++||| .+|+++..++.++....+++ +|+||||. ++|+++++|++++.+.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~---~~~eq~p~----------eI~~~V~~ci~~~~e~l~ 71 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKE---GWVEQDPK----------EIWQAVCRCIEKACEKLG 71 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCC---CeEEeCHH----------HHHHHHHHHHHHHHHhhc
Confidence 68999999999999999999 69999999999998877775 46888888 9999999999987653
Q ss_pred ---CCCCCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHHHHHHHhCChHH-H
Q 015802 86 ---LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALE-L 161 (400)
Q Consensus 86 ---~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~~~~~~~-~ 161 (400)
.....|++||++.|+++.|+|++...- | .+|+|.|+|+|+..++++++........ .
T Consensus 72 ~~~~~~~~~~~igv~~qr~~~v~w~~~tg~---------p----------~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~ 132 (516)
T KOG2517|consen 72 VLNIKVVGATCIGVVNQREGSVLWNKRTGE---------P----------LTNIIVWMDHRAVSEVEELNSSTPSNLFLP 132 (516)
T ss_pred cccccccccEEEEEEecCCceEEeecCCCC---------c----------ccceEEeeccccHHHHHHHHhcCCchhccc
Confidence 234558889999999999999985542 3 5899999999999999999998642111 2
Q ss_pred HHHhCCCCCCCChHHHHHHHhhcCchh-HHhcccccchhhHHHHHHhC---C-c-eeeccchhccccccccCCCCccHHH
Q 015802 162 SKLTGSRGYERFTGPQIRKLFQTQPGV-YDDTERISVVSSFMASLLIG---A-Y-ACIDETDAAGMNLMDIRQRVWSKIV 235 (400)
Q Consensus 162 ~~~tG~~~~~~~~~~kl~Wl~~~~pe~-~~~~~~~~~~~dyl~~~LTG---~-~-~~~d~s~As~tgl~d~~~~~W~~~~ 235 (400)
..++|.+++++|.++||+||++|.|++ ..+.+..+...+|+.|++++ . . .++|.++|+++++||..+..||..+
T Consensus 133 ~~~~Gl~~s~~f~~~KL~Wl~dn~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~ 212 (516)
T KOG2517|consen 133 RPYCGLPVSPEFSAPKLRWLLDNVPEVLKAKEEGGFDLGTFDTWLATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKL 212 (516)
T ss_pred ccccCCccccccchheehHHhhhCHHHHHHHHhcccchhhhhhheeecCCccceeccccccccccccccchhhhhhhhhh
Confidence 378999999999999999999999998 77777777777776666664 3 2 2589999999999999999999999
Q ss_pred HHHcCCchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCcEEEEecccceeeeecCCC
Q 015802 236 LEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDP 315 (400)
Q Consensus 236 l~~~g~~~~~~LP~l~~~~~~~G~l~~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~ 315 (400)
++.+|++ .++||++..++++.|.+.. ..+|+.+|+||.++.+|++|+++|..+.++|+...++||+.++..++...
T Consensus 213 ~~f~~lp-~~llp~i~s~~e~~g~~~~---~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~ 288 (516)
T KOG2517|consen 213 LDFFGLP-LNLLPDIRSSSEVYGTTAA---GDLGLLEGTPVSSCLGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVWGPY 288 (516)
T ss_pred hhhhCCC-cccCCcccccccccccccc---cccccccCcceeechhhHHHHHHhHhhhcCcceEEeeCCceEEeeccCCc
Confidence 9999977 8999999999999998753 35679999999999999999999999999999999999999999999854
Q ss_pred CC--CCCce-eecCCCC---CCceEEEEEEecchhHHHHHHHHhc-CccHHHHHHHHhcCCCCCCCeEEEeccCCCCCCC
Q 015802 316 EP--RLEGH-VFPNPVD---TKGYMIMLVYKNASLTREDVRNRCA-EKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPP 388 (400)
Q Consensus 316 ~~--~~~~~-~~~~~~~---~~~~~~~~~~~~~G~~~~W~~~~~~-~~~~~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~ 388 (400)
.. ..... +..+... .-.|..++....++.+++|.++.+. .+...+.++.++++. .+.+++|.|.|.|.|+|+
T Consensus 289 ~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~~~~i~~~~~~~~-~t~d~~f~P~f~G~~sP~ 367 (516)
T KOG2517|consen 289 FDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEELNEIEKLAAEVN-LTSDVHFVPDFHGLRSPY 367 (516)
T ss_pred cccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHhhc-ccCceEEEccccCCCCCC
Confidence 31 11111 1111111 1147888888999999999999884 244556667777665 789999999999999999
Q ss_pred CCC
Q 015802 389 LPG 391 (400)
Q Consensus 389 ~~~ 391 (400)
|+.
T Consensus 368 ~d~ 370 (516)
T KOG2517|consen 368 ADP 370 (516)
T ss_pred CCc
Confidence 975
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=98.81 E-value=1.4e-08 Score=92.25 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=68.1
Q ss_pred EEEEecccceeeeecCCCCCCCCce--eecCCCCCCceEEEEEEecchhHHHHHHHHhcC-------cc-HHHHH-HHHh
Q 015802 298 LAISLGTSDTVFGITDDPEPRLEGH--VFPNPVDTKGYMIMLVYKNASLTREDVRNRCAE-------KS-WDVFN-KYLQ 366 (400)
Q Consensus 298 ~~~s~GTs~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~-------~~-~~~l~-~~a~ 366 (400)
+++|+|||+++..++++|..+.... .+.....++.|.++++++++|.+++|+++.+.. .. ++.+. ....
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEAA 80 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHHH
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHhh
Confidence 5789999999999999888444332 222112478899999999999999999999621 11 23333 2233
Q ss_pred cCCCCCCCeEEEeccCCCCCCCCC
Q 015802 367 QTPPLNGGKMGFYYKEHEILPPLP 390 (400)
Q Consensus 367 ~~~~g~~gl~~~P~l~G~r~P~~~ 390 (400)
..++++++++|+|+|.|+|.|+|.
T Consensus 81 ~~~~~~~~~~~~p~~~G~~~p~~~ 104 (198)
T PF02782_consen 81 ASPPGSGGVFFLPFLSGERSPYWD 104 (198)
T ss_dssp HTSSTCTTSEEEECTTGBCTTTBB
T ss_pred hccCcccceeeeeccccCcccccc
Confidence 456778999999999999999853
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.59 E-value=1.1e-07 Score=90.12 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=56.1
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (400)
|++|||+|||++|++++| +|++++..+. |++ .||+.+.++++++.+. .+.
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~il~~~~~-----------------~~~----------~~~~~~~~~l~~~~~~~~~~~ 52 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGKVIGYKWL-----------------DTT----------PVIEETARAILEALKEAGIGL 52 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCEEEEEEEe-----------------cCC----------CCHHHHHHHHHHHHHHcCCCh
Confidence 589999999999999999 8998876544 444 6788888888887654 566
Q ss_pred CCEeEEEeecccceeeEe
Q 015802 89 SKVTAVSGSGQQHGSVYW 106 (400)
Q Consensus 89 ~~I~aIgis~~~~~~v~~ 106 (400)
.+|.+|++|++++++++.
T Consensus 53 ~~i~~i~~Tg~~~~~v~~ 70 (248)
T TIGR00241 53 EPIDKIVATGYGRHKVGF 70 (248)
T ss_pred hheeEEEEECCCcccccc
Confidence 789999999999999873
No 25
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=98.26 E-value=4.8e-06 Score=81.40 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=85.9
Q ss_pred CCCceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcC
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSL 86 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (400)
++..+++|||||+|++|++++|.+|+++...+.+++.. .+.+ .+.+.+.+.++++.+..
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~-----------~~~~----------~~~~~i~~~i~~~~~~~ 61 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTP-----------DPEE----------AILEAILALVAELLKQA 61 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCC-----------Cchh----------HHHHHHHHHHHHHHHhc
Confidence 45578999999999999999999999999988887631 1123 67778888888776542
Q ss_pred -CCCCEeEEEeecccceeeEecCCCcc-ccccCC--CCCCccccccccCCCCCCccccCCChHHHHHHHHHH
Q 015802 87 -DLSKVTAVSGSGQQHGSVYWKKGSAT-ILSSLD--PKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKA 154 (400)
Q Consensus 87 -~~~~I~aIgis~~~~~~v~~d~~g~~-~~~~~~--~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~~~ 154 (400)
...++.+||++++ + .+|..... ..+++. ...+|.+.|++.|+ .|+.+.+|.++....|.+...
T Consensus 62 ~~~~~~iGIgi~~p--g--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~Pv~veNDan~aalaE~~~g~ 128 (314)
T COG1940 62 QGRVAIIGIGIPGP--G--DVDNGTVIVPAPNLGWWNGVDLAEELEARLG-LPVFVENDANAAALAEAWFGA 128 (314)
T ss_pred CCcCceEEEEeccc--e--eccCCcEEeecCCCCccccccHHHHHHHHHC-CCEEEecHHHHHHHHHHHhCC
Confidence 2344666666665 2 34544311 112332 22468888888877 789999999999988887653
No 26
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.03 E-value=2e-05 Score=74.91 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=68.5
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
+++|||||.|++|++++|.+|+++.+.+.+++ ..+++ ++.+.+.++++++... ...
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~------------~~~~~----------~~~~~i~~~i~~~~~~--~~~ 56 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTP------------REDYP----------QLLQILRDLTEEADTY--CGV 56 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC------------CcCHH----------HHHHHHHHHHHHHHhh--cCC
Confidence 47999999999999999999999987766543 12344 6777777777765431 233
Q ss_pred EeEEEeecccceeeEecCCCccc-cccCC--CCCCccccccccCCCCCCccccCCChHHHHHHH
Q 015802 91 VTAVSGSGQQHGSVYWKKGSATI-LSSLD--PKKPLVDQLGDAFSTKESPVWMDSSTTAQCREI 151 (400)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~-~~~~~--~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~ 151 (400)
+.+|||+.+ ++ +|.+...+ ..++. .+.+|.+.|+.+|. .|+++=+|.++...+|.+
T Consensus 57 ~~gIgv~~p--G~--vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~-~pV~leNDanaaAlaE~~ 115 (256)
T PRK13311 57 QGSVGIGIP--GL--PNADDGTVFTANVPSAMGQPLQADLSRLIQ-REVRIDNDANCFALSEAW 115 (256)
T ss_pred CceEEEEec--Cc--EECCCCEEEccCCCcccCCChHHHHHHHHC-CCEEEEchhhHHHHHHHH
Confidence 458888876 33 46543321 11111 12355555555444 455555555555555444
No 27
>PRK09698 D-allose kinase; Provisional
Probab=98.02 E-value=3.5e-05 Score=74.89 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=54.9
Q ss_pred CCceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCC
Q 015802 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (400)
Q Consensus 8 ~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (400)
.+.+++|||+|.|++|++++|.+|+++...+.+.+. ..+++ . .+.+.+.++++.+..
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~-----------~~~~~----------~-~~~l~~~i~~~~~~~- 58 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE-----------VIAPD----------L-VSGLGEMIDEYLRRF- 58 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc-----------ccchH----------H-HHHHHHHHHHHHHHc-
Confidence 356899999999999999999999999877665431 11233 3 666666666665532
Q ss_pred CCCEeEEEeecccceeeEecCCCc
Q 015802 88 LSKVTAVSGSGQQHGSVYWKKGSA 111 (400)
Q Consensus 88 ~~~I~aIgis~~~~~~v~~d~~g~ 111 (400)
..++.+|||+.+ |. +|.++.
T Consensus 59 ~~~i~gigia~p--G~--vd~~~g 78 (302)
T PRK09698 59 NARCHGIVMGFP--AL--VSKDRR 78 (302)
T ss_pred CCCeeEEEEeCC--cc--eeCCCC
Confidence 257999999987 43 566544
No 28
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.76 E-value=9.4e-05 Score=71.96 Aligned_cols=113 Identities=14% Similarity=0.223 Sum_probs=73.9
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
+++|||+|.|++|++++|.+|+++...+.+.+ ..+++ .+.+.+.+.++++... ...
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~------------~~~~~----------~~~~~i~~~i~~~~~~--~~~ 56 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLELQWEERVPTP------------RDSYD----------AFLDAVCELVAEADQR--FGC 56 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCcEEEEEEecCC------------CcCHH----------HHHHHHHHHHHHHHhh--cCC
Confidence 47999999999999999999999987765543 12344 7778888887776532 223
Q ss_pred EeEEEeecccceeeEecCCCcccc-ccCC--CCCCccccccccCCCCCCccccCCChHHHHHHHH
Q 015802 91 VTAVSGSGQQHGSVYWKKGSATIL-SSLD--PKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIE 152 (400)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~-~~~~--~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~~ 152 (400)
+.+|||+.+ |. +|.+...+. +++. .+.||.+.|+..|+ .|+++=+|.++...+|.+.
T Consensus 57 ~~~igia~p--G~--vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~-~pV~ieNDa~aaalaE~~~ 116 (303)
T PRK13310 57 KGSVGIGIP--GM--PETEDGTLYAANVPAASGKPLRADLSARLG-RDVRLDNDANCFALSEAWD 116 (303)
T ss_pred cceEEEeCC--Cc--ccCCCCEEeccCcccccCCcHHHHHHHHHC-CCeEEeccHhHHHHHHhhh
Confidence 457888876 33 465433221 2221 22466666766665 4666667777777666554
No 29
>PRK09557 fructokinase; Reviewed
Probab=97.73 E-value=0.00014 Score=70.67 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=70.0
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
|.||||+|.|++|++++|.+|+++...+.+++ .++++ .+.+.+.+.++++.+. ...
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~------------~~~~~----------~~~~~i~~~i~~~~~~--~~~ 56 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTP------------RDDYQ----------QTIEAIATLVDMAEQA--TGQ 56 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC------------CCCHH----------HHHHHHHHHHHHHHhh--cCC
Confidence 57999999999999999999999887665543 12444 6777777777776542 235
Q ss_pred EeEEEeecccceeeEecCCCcccc-ccCC--CCCCccccccccCCCCCCccccCCChHHHHHHH
Q 015802 91 VTAVSGSGQQHGSVYWKKGSATIL-SSLD--PKKPLVDQLGDAFSTKESPVWMDSSTTAQCREI 151 (400)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~-~~~~--~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~ 151 (400)
+.+|||+.+ |. +|.+...+. .+.. .+.||.+.|+.+|. .|+.+=+|.++...+|.+
T Consensus 57 ~~gIgi~~p--G~--vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~-~pv~~~NDa~aaA~aE~~ 115 (301)
T PRK09557 57 RGTVGVGIP--GS--ISPYTGLVKNANSTWLNGQPLDKDLSARLN-REVRLANDANCLAVSEAV 115 (301)
T ss_pred ceEEEecCc--cc--CcCCCCeEEecCCccccCCCHHHHHHHHHC-CCEEEccchhHHHHHHHH
Confidence 678999887 33 464333221 1111 22355555555554 355555666666555544
No 30
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.73 E-value=0.00011 Score=71.90 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=71.5
Q ss_pred EEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCCCC
Q 015802 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 90 (400)
||||+|+|++|++++|.+|+++...+.+.+ .+++ .+.+.+.+.++++.+. ....+
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~-------------~~~~----------~~~~~l~~~i~~~~~~~~~~~~~ 57 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD-------------TTPE----------TIVDAIASAVDSFIQHIAKVGHE 57 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC-------------CCHH----------HHHHHHHHHHHHHHHhcCCCccc
Confidence 689999999999999999999987655432 1344 6777888888776653 45568
Q ss_pred EeEEEeecccceeeEecCC-Ccccc-ccCC-CCCCccccccccCCCCCCccccCCChHHHHHHH
Q 015802 91 VTAVSGSGQQHGSVYWKKG-SATIL-SSLD-PKKPLVDQLGDAFSTKESPVWMDSSTTAQCREI 151 (400)
Q Consensus 91 I~aIgis~~~~~~v~~d~~-g~~~~-~~~~-~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~~ 151 (400)
+.+|||+.. |. +|.+ |.... ++++ .+.++.+.|+..|. .|+.+=+|.++...++.+
T Consensus 58 i~gIgva~p--G~--vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~-~pv~v~NDa~~~alaE~~ 116 (318)
T TIGR00744 58 IVAIGIGAP--GP--VNRQRGTVYFAVNLDWKQEPLKEKVEARVG-LPVVVENDANAAALGEYK 116 (318)
T ss_pred eEEEEEecc--cc--ccCCCCEEEecCCCCCCCCCHHHHHHHHHC-CCEEEechHHHHHHHHHH
Confidence 999999987 43 4654 33211 1222 22355555555554 455555666655555544
No 31
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.57 E-value=9.9e-05 Score=59.24 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=25.9
Q ss_pred EEEEEecCcceEEEEEcCCCCEEEEEEee
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v~~~~~~ 40 (400)
+||||+|+|.+|++++|.+|+++...+.+
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~ 31 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVI 31 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEE
Confidence 79999999999999999999999766554
No 32
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.47 E-value=0.0001 Score=65.74 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=51.7
Q ss_pred EEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCCEeE
Q 015802 14 GFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVTA 93 (400)
Q Consensus 14 gIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~a 93 (400)
|||+|+++++++++|.+|+++.+.+.+++ .+++ ++.+.+.+.++++.+.. ... +
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~-------------~~~~----------~~~~~l~~~i~~~~~~~--~~~-g 54 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP-------------TSPE----------ELLDALAELIERLLADY--GRS-G 54 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH-------------SSHH----------HHHHHHHHHHHHHHHHH--TCE-E
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC-------------CCHH----------HHHHHHHHHHHHHHhhc--ccc-c
Confidence 79999999999999999999999887764 2334 78888888888877641 122 8
Q ss_pred EEeecccceeeEecCCC
Q 015802 94 VSGSGQQHGSVYWKKGS 110 (400)
Q Consensus 94 Igis~~~~~~v~~d~~g 110 (400)
|||+.+ +. +|.+.
T Consensus 55 Igi~~p--G~--v~~~~ 67 (179)
T PF00480_consen 55 IGISVP--GI--VDSEK 67 (179)
T ss_dssp EEEEES--SE--EETTT
T ss_pred EEEecc--cc--CcCCC
Confidence 888877 44 56654
No 33
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.44 E-value=0.00051 Score=66.43 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=65.1
Q ss_pred EEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCCE
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I 91 (400)
++|||+|.|+++++++|.+|+++...+.+++. ..+++ .+.+.+.++++++.+ ++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~~-----------~~~~~----------~~~~~i~~~i~~~~~-----~~ 56 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTPA-----------SQTPE----------ALRQALSALVSPLQA-----QA 56 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecCCC-----------CCCHH----------HHHHHHHHHHHHhhh-----cC
Confidence 79999999999999999999999876665531 12344 677777777776542 45
Q ss_pred eEEEeecccceeeEecCCCcccc--ccC-C-CCCCccccccccCCCCCCccccCCChHHHHHH
Q 015802 92 TAVSGSGQQHGSVYWKKGSATIL--SSL-D-PKKPLVDQLGDAFSTKESPVWMDSSTTAQCRE 150 (400)
Q Consensus 92 ~aIgis~~~~~~v~~d~~g~~~~--~~~-~-~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~~ 150 (400)
.+|||+.+ |. +|.+..... +++ + .+.+|.+.++..|+ .|+++=||.++...+|.
T Consensus 57 ~~igi~~p--G~--vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~-~pv~v~NDa~a~a~aE~ 114 (291)
T PRK05082 57 DRVAVAST--GI--INDGILTALNPHNLGGLLHFPLVQTLEQLTD-LPTIALNDAQAAAWAEY 114 (291)
T ss_pred cEEEEeCc--cc--ccCCeeEEecCCCCccccCCChHHHHHHHhC-CCEEEECcHHHHHHHHH
Confidence 68888887 33 343221100 011 1 22345555555454 35555555555554443
No 34
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.29 E-value=0.0011 Score=64.00 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=45.0
Q ss_pred ceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CC
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 87 (400)
.+++|||+|+|++|++|+| +++++.....+.. -+ ..+...++++++.+. ..
T Consensus 32 m~~~GIDiGStt~K~Vlld-~~~i~~~~~~~tg-------------~~-------------~~~~a~~~l~~~l~~~g~~ 84 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC-DGELYGYNSMRTG-------------NN-------------SPDSAKNALQGIMDKIGMK 84 (293)
T ss_pred cEEEEEEeCchhEEEEEEe-CCEEEEEEeecCC-------------CC-------------HHHHHHHHHHHHHHHcCCc
Confidence 3899999999999999999 4566654333221 12 234566666666553 34
Q ss_pred CCCEeEEEeeccccee
Q 015802 88 LSKVTAVSGSGQQHGS 103 (400)
Q Consensus 88 ~~~I~aIgis~~~~~~ 103 (400)
..+|..++.|+.+...
T Consensus 85 ~~~v~~~~~TGyGr~~ 100 (293)
T TIGR03192 85 LEDINYVVGTGYGRVN 100 (293)
T ss_pred ccceEEEEEECcchhh
Confidence 4678999988886544
No 35
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.29 E-value=0.00074 Score=67.61 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=49.4
Q ss_pred CCceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--
Q 015802 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (400)
Q Consensus 8 ~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 85 (400)
++.+++|||+|+|++|++++| +++++.....++. ...+.+.++++++++.
T Consensus 142 ~~g~~lGIDiGSTttK~Vl~d-d~~Ii~~~~~~t~---------------------------~~~~~a~~~l~~~l~~~G 193 (404)
T TIGR03286 142 QEGLTLGIDSGSTTTKAVVME-DNEVIGTGWVPTT---------------------------KVIESAEEAVERALEEAG 193 (404)
T ss_pred cCCEEEEEEcChhheeeEEEc-CCeEEEEEEeecc---------------------------cHHHHHHHHHHHHHHHcC
Confidence 345899999999999999998 6688776544321 1234566666665543
Q ss_pred CCCCCEeEEEeecccceee
Q 015802 86 LDLSKVTAVSGSGQQHGSV 104 (400)
Q Consensus 86 ~~~~~I~aIgis~~~~~~v 104 (400)
+...+|..|++|+.+...+
T Consensus 194 l~~~di~~i~~TGyGR~~i 212 (404)
T TIGR03286 194 VSLEDVEAIGTTGYGRFTI 212 (404)
T ss_pred CCccceeEEEeeeecHHHH
Confidence 4567899999999876665
No 36
>PRK12408 glucokinase; Provisional
Probab=97.09 E-value=0.00071 Score=67.02 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCceEEEEEecCcceEEEEEcCCCCE
Q 015802 8 KDSLFLGFDSSTQSLKATVLDSNLNI 33 (400)
Q Consensus 8 ~~~~~lgIDiGttsiKa~l~d~~G~~ 33 (400)
+...+|++|||+|++|.+++|.+|++
T Consensus 14 ~~~~~L~~DIGGT~i~~al~d~~g~~ 39 (336)
T PRK12408 14 RPESFVAADVGGTHVRVALVCASPDA 39 (336)
T ss_pred ccccEEEEEcChhhhheeEEeccCCc
Confidence 34458999999999999999998873
No 37
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.90 E-value=0.0045 Score=58.85 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=45.3
Q ss_pred eEEEEEecCcceEEEEEcCCCCE-EEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNI-VASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~-v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 87 (400)
+++|||+|+|++|++++|.+++. .......+++ +.. .-.++..++++++.+. +.
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~-------------~~~----------~~~~~~~~~l~~~~~~~g~~ 58 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRI-------------RQR----------DPFKLAEDAYDDLLEEAGLA 58 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecC-------------CCC----------CHHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999975543 2222232221 011 2234556667766553 44
Q ss_pred CCCEeEEEeeccccee
Q 015802 88 LSKVTAVSGSGQQHGS 103 (400)
Q Consensus 88 ~~~I~aIgis~~~~~~ 103 (400)
..+|..|+.|+.+..+
T Consensus 59 ~~~i~~i~~TGYGR~~ 74 (262)
T TIGR02261 59 AADVAYCATTGEGESL 74 (262)
T ss_pred hhheEEEEEECCchhh
Confidence 5789999999986644
No 38
>PRK13318 pantothenate kinase; Reviewed
Probab=96.87 E-value=0.0025 Score=60.64 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=42.6
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
++|+||+|.|++|.+++| +|+++...+.+++. ...++ ++...+.+.++... .+..+
T Consensus 1 MiL~IDIGnT~iK~al~d-~g~i~~~~~~~t~~-----------~~~~~----------~~~~~l~~l~~~~~--~~~~~ 56 (258)
T PRK13318 1 MLLAIDVGNTNTVFGLYE-GGKLVAHWRISTDS-----------RRTAD----------EYGVWLKQLLGLSG--LDPED 56 (258)
T ss_pred CEEEEEECCCcEEEEEEE-CCEEEEEEEEeCCC-----------CCCHH----------HHHHHHHHHHHHcC--CCccc
Confidence 378999999999999999 68888766655431 12233 44444444333211 33457
Q ss_pred EeEEEeecc
Q 015802 91 VTAVSGSGQ 99 (400)
Q Consensus 91 I~aIgis~~ 99 (400)
|.+|++++.
T Consensus 57 i~~I~issV 65 (258)
T PRK13318 57 ITGIIISSV 65 (258)
T ss_pred CceEEEEEe
Confidence 999999983
No 39
>PRK00292 glk glucokinase; Provisional
Probab=96.85 E-value=0.0028 Score=62.13 Aligned_cols=31 Identities=16% Similarity=-0.030 Sum_probs=24.5
Q ss_pred ceEEEEEecCcceEEEEEcC-CCCEEEEEEee
Q 015802 10 SLFLGFDSSTQSLKATVLDS-NLNIVASEQLQ 40 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~-~G~~v~~~~~~ 40 (400)
+++||||||+|++|++++|. +++++...+.+
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~ 33 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYA 33 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEe
Confidence 47899999999999999995 56656555443
No 40
>PRK13321 pantothenate kinase; Reviewed
Probab=96.78 E-value=0.0026 Score=60.53 Aligned_cols=65 Identities=23% Similarity=0.227 Sum_probs=44.8
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
++|+||+|.|++|.+++|.+ +++...+.+++ ...+++ ++...+..++++.. .+.++
T Consensus 1 MiL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~-----------~~~~~~----------~~~~~l~~l~~~~~--~~~~~ 56 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDGD-RLLRSFRLPTD-----------KSRTSD----------ELGILLLSLFRHAG--LDPED 56 (256)
T ss_pred CEEEEEECCCeEEEEEEECC-EEEEEEEEecC-----------CCCCHH----------HHHHHHHHHHHHcC--CChhh
Confidence 47899999999999999944 77765555443 122334 66666666665542 23457
Q ss_pred EeEEEeecc
Q 015802 91 VTAVSGSGQ 99 (400)
Q Consensus 91 I~aIgis~~ 99 (400)
|.+|++++.
T Consensus 57 i~~i~vssV 65 (256)
T PRK13321 57 IRAVVISSV 65 (256)
T ss_pred CCeEEEEee
Confidence 999999984
No 41
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.76 E-value=0.0021 Score=61.54 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=43.3
Q ss_pred EEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCCCC
Q 015802 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 90 (400)
||||.|+|++|++++|.+|+++......-.. ....+.+ ...+.+.++++++.+. .+..+
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~n---------~~~~~~~----------~~~~~i~~~i~~~~~~~~~~~~~ 61 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGGAN---------YNSVGFE----------EAMENIKEAIEEALSQAGLSPDD 61 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-TT---------HHHHHHH----------HHHHHHHHHHHHHHHHHTTSTTC
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCCCC---------CCCCCcc----------hhhhHHHHHHHHHHHHcCCCccc
Confidence 7999999999999999999988776543210 1112334 6677777777777664 44555
Q ss_pred EeEE
Q 015802 91 VTAV 94 (400)
Q Consensus 91 I~aI 94 (400)
|..+
T Consensus 62 i~~~ 65 (271)
T PF01869_consen 62 IAAI 65 (271)
T ss_dssp CCEE
T ss_pred ccee
Confidence 5555
No 42
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=96.74 E-value=0.0027 Score=56.98 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=58.1
Q ss_pred EEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCCCC
Q 015802 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 90 (400)
||||+|+|.+-++++|.+..+++..+.++. ++ .....+..+++++... .++++
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt---------------~~----------d~~~gi~~al~~l~~~~~~~~~~ 56 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT---------------PD----------DPAEGILEALDALLEESGIDPSD 56 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC---------------Cc----------CHHHHHHHHHHhhhcccCCChhh
Confidence 799999999999999998888888877653 22 4667888888888764 56789
Q ss_pred EeEEEeecccceeeEecCCCcc
Q 015802 91 VTAVSGSGQQHGSVYWKKGSAT 112 (400)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~ 112 (400)
|..|-+++...+=.++-.+|.+
T Consensus 57 i~~v~~gTT~~tNAl~e~~g~~ 78 (176)
T PF05378_consen 57 IDRVRHGTTVATNALLERKGAR 78 (176)
T ss_pred CcEEEeccHHHHHHHHhccCCC
Confidence 9999999875555555556644
No 43
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.65 E-value=0.0014 Score=70.42 Aligned_cols=108 Identities=12% Similarity=0.015 Sum_probs=64.3
Q ss_pred CCceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCC
Q 015802 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (400)
Q Consensus 8 ~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (400)
.+-.+||||||+|++|.+++|.+|+++...+.+++ +.+ .+.+.+.+.+++. .
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~--------------~~~----------~~~~~i~~~l~~~----~ 67 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALETGPGEITQIRVYPGA--------------DYP----------TLTDAIRKYLKDV----K 67 (638)
T ss_pred CCCCEEEEEcCchhheeeeecCCCcccceeEEecC--------------CCC----------CHHHHHHHHHHhc----C
Confidence 34579999999999999999999998776555432 112 3444444444332 1
Q ss_pred CCCEeEEEeecccceeeEecCCCccccccCCCCCCccccccccCCCCCCccccCCChHHHHH
Q 015802 88 LSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCR 149 (400)
Q Consensus 88 ~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~pl~~~~~~~~~~~~~i~w~D~R~~~~~~ 149 (400)
..++.+|||+.. |. +|.+. ..+.+++-..++ +.++..|++.++.+=||-++....+
T Consensus 68 ~~~~~~igig~p--Gp--Vd~~~-~~~~nl~w~~~~-~~l~~~~g~~~v~l~ND~~aaA~ge 123 (638)
T PRK14101 68 IGRVNHAAIAIA--NP--VDGDQ-VRMTNHDWSFSI-EATRRALGFDTLLVVNDFTALAMAL 123 (638)
T ss_pred CCCcceEEEEEe--cC--ccCCe-eeecCCCcEecH-HHHHHHcCCCeEEEEchHHHHHcCC
Confidence 235778888876 22 33322 112233211243 4556666644566778888877663
No 44
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.56 E-value=0.0062 Score=58.52 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=42.4
Q ss_pred CCCceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCC-CCCCCcCCChhHHHHHHHHHHHHHh
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDP-SNNGRIVSPTLMWIEALDLMLQKLS 83 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~-~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (400)
+.++|+||||-|+|++|+++.|.+|+++......-.. ...++ + +-++.+..++.+..
T Consensus 2 ~~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGpAN----------~~~~~~e----------~A~~ni~~ai~~A~ 59 (301)
T COG2971 2 EPMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGPAN----------IQLVGKE----------EAVRNIKDAIREAL 59 (301)
T ss_pred CCccEEEEEccCCcceEEEEEcCCCcEEEEeccCCce----------ecccchH----------HHHHHHHHHHHHHH
Confidence 4568999999999999999999999999987654221 22344 4 56666776666655
No 45
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=95.98 E-value=0.021 Score=56.30 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=47.4
Q ss_pred CCCceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcC
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSL 86 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (400)
++..++||||.|+|.+|+++.+.+..+......... + .| .-.+++.++++++-.
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~------g-------~p-----------~~~~~l~~~le~l~~-- 185 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTK------G-------RP-----------IAEKALKEALEELGE-- 185 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEeCCCeEEEEEEEcCC------C-------Ch-----------hHHHHHHHHHHHccc--
Confidence 345689999999999999999887755543322211 0 11 222445555555543
Q ss_pred CCCCEeEEEeecccceeeE
Q 015802 87 DLSKVTAVSGSGQQHGSVY 105 (400)
Q Consensus 87 ~~~~I~aIgis~~~~~~v~ 105 (400)
...+|.++++++.+..++-
T Consensus 186 ~~~~I~~~~~TGYGR~~v~ 204 (396)
T COG1924 186 KLEEILGLGVTGYGRNLVG 204 (396)
T ss_pred ChheeeeeeeecccHHHhh
Confidence 3468999999998766643
No 46
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=95.83 E-value=0.011 Score=59.06 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=29.1
Q ss_pred CceEEEEEecCcceEEEEEcCCCCEEEEEEeec
Q 015802 9 DSLFLGFDSSTQSLKATVLDSNLNIVASEQLQF 41 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~ 41 (400)
++|++|||+|+|++|++|+|.+++++.....+.
T Consensus 1 m~y~lGIDIGSTsTKaVVmd~~g~Il~~~i~pT 33 (432)
T TIGR02259 1 MECFVGIDLGSTTTKAVLMDDKGEVIGRGITNS 33 (432)
T ss_pred CceEEEEEcCchhEEEEEEcCCCcEEEEEecCC
Confidence 358999999999999999999888998877665
No 47
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=95.75 E-value=0.019 Score=56.34 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=20.8
Q ss_pred EEEEecCcceEEEEEcCCCCEEEE
Q 015802 13 LGFDSSTQSLKATVLDSNLNIVAS 36 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v~~ 36 (400)
|.+|||+|++|.+++|.+|+++..
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEecCCCceee
Confidence 579999999999999998876654
No 48
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=95.60 E-value=0.063 Score=51.39 Aligned_cols=61 Identities=23% Similarity=0.184 Sum_probs=42.3
Q ss_pred CCceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhh
Q 015802 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (400)
Q Consensus 8 ~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (400)
++++++||||||+++|+++.+.+++.+.....+-.-.. .+...|.+ ...+.+.++++.+.+
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr------~G~i~di~----------~a~~~i~~~~~~ae~ 82 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVR------DGIVVDFI----------GAVTIVRRLKATLEE 82 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccC------CCEEeeHH----------HHHHHHHHHHHHHHH
Confidence 56799999999999999999888877666555432111 23466776 666666666665543
No 49
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.49 E-value=0.032 Score=56.60 Aligned_cols=84 Identities=11% Similarity=0.142 Sum_probs=47.9
Q ss_pred ceEEEEEecCcceEEEEEcC-CCCEEEEEEeeccCCCCCCCCC-----CceeeCCCCCCCcCCChhHHHHHHHHHHHHHh
Q 015802 10 SLFLGFDSSTQSLKATVLDS-NLNIVASEQLQFDSELPHYKTK-----DGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS 83 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~-~G~~v~~~~~~~~~~~~~~~~~-----g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (400)
+|-++||||||.+.+.++|. +|++++..+..++...-.. + .+.. +++ ..+.=-+.+.+.+..+++++.
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~Ga--DViSRI~~a~-~~~---~~~~L~~~i~~~i~~li~~l~ 74 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGA--DVISRISYAL-SPE---GLEELQRLIRETINELIEELL 74 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-S--SHHHHHHHHH--TT---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcch--HHHHHHHHhc-CCc---hHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999996 8999999999887432110 0 0111 332 000011134455666666665
Q ss_pred hc--CCCCCEeEEEeecc
Q 015802 84 KS--LDLSKVTAVSGSGQ 99 (400)
Q Consensus 84 ~~--~~~~~I~aIgis~~ 99 (400)
+. +++++|..|.|++.
T Consensus 75 ~~~gi~~~~I~~i~i~GN 92 (412)
T PF14574_consen 75 EKAGISPEDIYEIVIVGN 92 (412)
T ss_dssp HHHT--GGGEEEEEEEE-
T ss_pred HHcCCCHHHeEEEEEEec
Confidence 43 67889999999863
No 50
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=95.21 E-value=0.11 Score=53.12 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=50.2
Q ss_pred CCCceEEEEEecCcceEEEEEc--CCC--CEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHH
Q 015802 7 PKDSLFLGFDSSTQSLKATVLD--SNL--NIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKL 82 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d--~~G--~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l 82 (400)
|++++++||||||+++|+++.. .+| ++++.+..+.. |...+.-.|.+ ...+++.++++++
T Consensus 5 ~~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~------gi~~G~I~d~~----------~~~~aI~~av~~a 68 (420)
T PRK09472 5 TDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR------GMDKGGVNDLE----------SVVKCVQRAIDQA 68 (420)
T ss_pred cCCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCC------CccCCEEEcHH----------HHHHHHHHHHHHH
Confidence 5667999999999999999765 355 45555555421 11234667888 8888999998887
Q ss_pred hhc--CCCCCEeEEEeecc
Q 015802 83 SKS--LDLSKVTAVSGSGQ 99 (400)
Q Consensus 83 ~~~--~~~~~I~aIgis~~ 99 (400)
-+. .+.++| .+++++.
T Consensus 69 e~~~g~~i~~v-~v~i~g~ 86 (420)
T PRK09472 69 ELMADCQISSV-YLALSGK 86 (420)
T ss_pred HHHhCCcccEE-EEEecCc
Confidence 643 323333 2555553
No 51
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.64 E-value=0.22 Score=44.86 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=45.3
Q ss_pred EEEEEecCcceEEEEEcC--CC--CEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCC
Q 015802 12 FLGFDSSTQSLKATVLDS--NL--NIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~--~G--~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (400)
++||||||+++|+++... +| ++++....+.. |-..+.-.|.+ ...+++.++++++.+..
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~------gi~~G~I~d~~----------~~~~~I~~ai~~ae~~~- 63 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSR------GIRKGVIVDIE----------AAARAIREAVEEAERMA- 63 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC------CccCcEEECHH----------HHHHHHHHHHHHHHHHh-
Confidence 479999999999999863 45 44554444321 11234667888 88888999998886531
Q ss_pred CCCEe--EEEeecc
Q 015802 88 LSKVT--AVSGSGQ 99 (400)
Q Consensus 88 ~~~I~--aIgis~~ 99 (400)
..+|+ .+++++.
T Consensus 64 ~~~i~~V~v~i~g~ 77 (187)
T smart00842 64 GVKIDSVYVGISGR 77 (187)
T ss_pred CCcccEEEEEEcCC
Confidence 12333 3555554
No 52
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=94.08 E-value=0.089 Score=48.41 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=46.3
Q ss_pred eEEEEEecCcceEEEEEcCCCC-EEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--C-
Q 015802 11 LFLGFDSSTQSLKATVLDSNLN-IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--L- 86 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~-~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~- 86 (400)
.+|+||+|+||.|++++.-.|+ .+...+..|.+ |+. ......+ ++++-+..++..+.+. .
T Consensus 64 ~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i--p~~----~~~~~~~----------~lFd~ia~~i~~f~~~~~~~ 127 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVELSGNGKVEIEQEKYKI--PEE----LMNGSGE----------ELFDFIADCIAEFLKEHNLE 127 (206)
T ss_dssp EEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----HH----HHTSBHH----------HHHHHHHHHHHHHHHHTTTT
T ss_pred eEEEEeecCcEEEEEEEEEcCCCCceeeeccccC--ChH----HhcCCcc----------cHHHHHHHHHHHHHHHhccc
Confidence 7999999999999999997554 44444444431 221 1111224 8999999999998764 2
Q ss_pred CCCCEeEEEee
Q 015802 87 DLSKVTAVSGS 97 (400)
Q Consensus 87 ~~~~I~aIgis 97 (400)
+..+.--+||+
T Consensus 128 ~~~~~l~lGfT 138 (206)
T PF00349_consen 128 SRDEKLPLGFT 138 (206)
T ss_dssp STTSEEEEEEE
T ss_pred ccccccceEEE
Confidence 34556667766
No 53
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=93.68 E-value=0.29 Score=48.97 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=50.2
Q ss_pred eEEEEEecCcceEEEEEcC--CC--CEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc-
Q 015802 11 LFLGFDSSTQSLKATVLDS--NL--NIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS- 85 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~--~G--~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 85 (400)
+++||||||+++|+++... ++ ++++.+..+.. +-..+.-.|.+ ...+++.++++++.+.
T Consensus 1 ~~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~------gi~~G~I~d~~----------~~~~~i~~al~~~e~~~ 64 (371)
T TIGR01174 1 LIVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR------GIKKGVINDIE----------AAVGSIQRAIEAAELMA 64 (371)
T ss_pred CEEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC------CccCcEEEcHH----------HHHHHHHHHHHHHHHHh
Confidence 4789999999999999764 34 44544444322 22234667888 8888899998887553
Q ss_pred -CCCCCEeEEEeecccceeeEecCCC
Q 015802 86 -LDLSKVTAVSGSGQQHGSVYWKKGS 110 (400)
Q Consensus 86 -~~~~~I~aIgis~~~~~~v~~d~~g 110 (400)
...++ ..+++++. .+...+..+
T Consensus 65 ~~~i~~-v~~~v~g~--~v~~~~~~~ 87 (371)
T TIGR01174 65 GCEIRS-VIVSISGA--HIKSQNSIG 87 (371)
T ss_pred CCcccE-EEEEEccc--ceEEEeeeE
Confidence 22222 34566554 444343333
No 54
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=93.45 E-value=0.35 Score=46.33 Aligned_cols=70 Identities=7% Similarity=0.130 Sum_probs=53.5
Q ss_pred CceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--C
Q 015802 9 DSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--L 86 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 86 (400)
++++.||+=|.|+.|.+++|++++++..++....... ..+.+ ...+.+++++.++..+ .
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~---------~ig~~----------~~~~rie~~i~~A~~k~g~ 62 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHW---------LIGST----------TCASRIEDMIREAKEKAGW 62 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeeccccccc---------cCCch----------HHHHHHHHHHHHHHhhcCC
Confidence 4689999999999999999999999998877654322 22334 6788899898887653 6
Q ss_pred CCCC-EeEEEee
Q 015802 87 DLSK-VTAVSGS 97 (400)
Q Consensus 87 ~~~~-I~aIgis 97 (400)
+.+. ++++|++
T Consensus 63 d~~~~lr~lgL~ 74 (336)
T KOG1794|consen 63 DKKGPLRSLGLG 74 (336)
T ss_pred CccCccceeeee
Confidence 6666 7777765
No 55
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=93.00 E-value=0.25 Score=46.42 Aligned_cols=53 Identities=26% Similarity=0.232 Sum_probs=36.2
Q ss_pred EEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHH
Q 015802 14 GFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKL 82 (400)
Q Consensus 14 gIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l 82 (400)
||||||++||+++.+.+++.++....+-... .++.-.|.+ .....+.++.+.+
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~~~~~~~~------~~g~I~d~~----------~~~~~l~~l~~~a 53 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGVMQFADVV------RDGIVVDFL----------GAVEIVRRLKDTL 53 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEEecccccc------cCCeEEEhH----------HHHHHHHHHHHHH
Confidence 7999999999999998877666655443211 134677887 6666666666544
No 56
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=92.83 E-value=0.28 Score=48.85 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=24.2
Q ss_pred EEEEEecCcceEEEEEcCCCCEEEEEEe
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIVASEQL 39 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v~~~~~ 39 (400)
+|.|..|+||+|+++||.+++++.+...
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~ 29 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLR 29 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeec
Confidence 6899999999999999999988865433
No 57
>PTZ00288 glucokinase 1; Provisional
Probab=92.63 E-value=0.65 Score=47.18 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=47.6
Q ss_pred CCceEEEEEecCcceEEEEEcC---CCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhh
Q 015802 8 KDSLFLGFDSSTQSLKATVLDS---NLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (400)
Q Consensus 8 ~~~~~lgIDiGttsiKa~l~d~---~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (400)
.-.|++|+|||+|++|.++++. ++..+...+.+++.. -.|.. +..+.+...++++.+
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~----------~~~~~~~~~~~~l~~ 83 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNVT----------KTDIR----------ELLEFFDEVLQKLKK 83 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccCCCCCceeEEEEecccc----------cccHH----------HHHHHHHHHHHHHHh
Confidence 3458999999999999999986 333454555554310 12334 788888888888887
Q ss_pred c---CCCCCEeEEEeecc
Q 015802 85 S---LDLSKVTAVSGSGQ 99 (400)
Q Consensus 85 ~---~~~~~I~aIgis~~ 99 (400)
. +..-.-.+|+|.++
T Consensus 84 ~~~~~~~~~~a~iAvAGP 101 (405)
T PTZ00288 84 NLSFIQRVAAGAISVPGP 101 (405)
T ss_pred cCccccCcCeEEEEEeCc
Confidence 4 12333446677665
No 58
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=91.66 E-value=0.28 Score=48.15 Aligned_cols=74 Identities=24% Similarity=0.187 Sum_probs=47.6
Q ss_pred EEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCCEe
Q 015802 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVT 92 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~ 92 (400)
||+|||+-++|++++|.+|++....+..+|. | ++.+ .+-+++.++++++ +..+..
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~pl------W-----~~~~----------~L~~~l~~~~~~~----~~~~~~ 55 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPL------W-----KGND----------KLAETLKEISQDL----SSADNV 55 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCcc------c-----CCch----------HHHHHHHHHHHhc----CccceE
Confidence 6999999999999999999998877765552 2 2334 4444444444433 233456
Q ss_pred EEEeecccceeeEecCCCc
Q 015802 93 AVSGSGQQHGSVYWKKGSA 111 (400)
Q Consensus 93 aIgis~~~~~~v~~d~~g~ 111 (400)
+|-+|+-...+..-.++|.
T Consensus 56 avtMTgELaD~f~~r~~GV 74 (318)
T TIGR03123 56 AVTMTGELADCFEDKAEGV 74 (318)
T ss_pred EEEeehhhhhhhcCHHHHH
Confidence 6777765555554444554
No 59
>PRK13317 pantothenate kinase; Provisional
Probab=91.56 E-value=0.23 Score=47.90 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.5
Q ss_pred ceEEEEEecCcceEEEEEcCCCCEEEE
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLNIVAS 36 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~~v~~ 36 (400)
.+.+|||+|+|.+|.+++|+++++..+
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~~~~~ 28 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQRTFK 28 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCeEEEE
Confidence 478999999999999999998877643
No 60
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.03 E-value=0.5 Score=46.11 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=27.9
Q ss_pred CCCCCc--eEEEEEecCcceEEEEEcCCCCEEEEEEe
Q 015802 5 SLPKDS--LFLGFDSSTQSLKATVLDSNLNIVASEQL 39 (400)
Q Consensus 5 ~~~~~~--~~lgIDiGttsiKa~l~d~~G~~v~~~~~ 39 (400)
+|++++ ..+|||||+++||++-....|+-....++
T Consensus 3 ~l~~k~~~~~vGIdI~~~sVKvvqLs~~g~~~kLe~y 39 (354)
T COG4972 3 SLFGKKLNAAVGIDIGSHSVKVVQLSRSGNRYKLEKY 39 (354)
T ss_pred chhcccccceeeEeeccceEEEEEEcccCCceeeeee
Confidence 567775 79999999999999999977766555444
No 61
>PF13941 MutL: MutL protein
Probab=90.77 E-value=0.93 Score=46.67 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=40.5
Q ss_pred EEEEEecCcceEEEEEc---CCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc
Q 015802 12 FLGFDSSTQSLKATVLD---SNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d---~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (400)
+|.+|||+|-+|+.+|| .+.++++.++.++. ++ +. ++...+..+++++.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT-----------v~--~~----------Dv~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT-----------VE--PG----------DVTIGLNNALEQLEEQ 55 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC-----------cC--cc----------cHHHHHHHHHHHHHHh
Confidence 57899999999999999 46888888877765 21 13 5778899999988775
No 62
>PRK13324 pantothenate kinase; Reviewed
Probab=90.35 E-value=1 Score=42.89 Aligned_cols=66 Identities=21% Similarity=0.192 Sum_probs=40.8
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
++|.||+|-|++|-+++|. ++++...+..+. + .....+ ++...+...+++.. .+..+
T Consensus 1 MiL~iDiGNT~ik~gl~~~-~~~~~~~r~~t~----~------~~~t~d----------e~~~~l~~~~~~~~--~~~~~ 57 (258)
T PRK13324 1 MLLVMDMGNSHIHIGVFDG-DRIVSQIRYATS----S------VDSTSD----------QMGVFLRQALRENS--VDLGK 57 (258)
T ss_pred CEEEEEeCCCceEEEEEEC-CEEEEEEEEecC----c------cccchH----------HHHHHHHHHHHhcC--CCccC
Confidence 3789999999999999993 355554444331 0 122334 55555555554322 34557
Q ss_pred EeEEEeecc
Q 015802 91 VTAVSGSGQ 99 (400)
Q Consensus 91 I~aIgis~~ 99 (400)
|.++.+|+.
T Consensus 58 i~~viisSV 66 (258)
T PRK13324 58 IDGCGISSV 66 (258)
T ss_pred CCeEEEEeC
Confidence 888888875
No 63
>PLN02914 hexokinase
Probab=89.56 E-value=0.87 Score=47.32 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=41.4
Q ss_pred eEEEEEecCcceEEEEEcCCCC---EEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc
Q 015802 11 LFLGFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~---~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (400)
.+++||+|+||.|+++++-+|+ ++...+..+++ |. ....-..+ ++++-+.++++++++.
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p~----~l~~gt~~----------eLFdfIA~~i~~fl~~ 157 (490)
T PLN02914 96 LFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSI--PQ----ELMFGTSE----------ELFDFIASGLANFVAK 157 (490)
T ss_pred EEEEEecCCceEEEEEEEecCCCCceeeeeEEEecC--Ch----hhccCCHH----------HHHHHHHHHHHHHHHh
Confidence 7999999999999999997652 45544444432 11 11222334 8999999999998763
No 64
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=88.70 E-value=1.7 Score=42.92 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=24.6
Q ss_pred CceEEEEEecCcceEEEEEcCCC---CEEEEEEeecc
Q 015802 9 DSLFLGFDSSTQSLKATVLDSNL---NIVASEQLQFD 42 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~~G---~~v~~~~~~~~ 42 (400)
+..++|||||++++|++.+...+ +++.....+.+
T Consensus 2 ~~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p 38 (348)
T TIGR01175 2 KSLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLP 38 (348)
T ss_pred CCcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECC
Confidence 56799999999999999998533 33444444443
No 65
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=88.25 E-value=0.74 Score=41.92 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=29.3
Q ss_pred CCCceEEEEEecCcceEEEEEcCCCCEEEEEEee
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~ 40 (400)
-+.++.+|+|+||.+|-..++|.||+.++-.-..
T Consensus 26 d~sk~~vGVDLGT~~iV~~vlD~d~~Pvag~~~~ 59 (277)
T COG4820 26 DESKLWVGVDLGTCDIVSMVLDRDGQPVAGCLDW 59 (277)
T ss_pred ccCceEEEeecccceEEEEEEcCCCCeEEEEehh
Confidence 3457999999999999999999999999876443
No 66
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=87.38 E-value=1.9 Score=42.65 Aligned_cols=69 Identities=26% Similarity=0.320 Sum_probs=35.2
Q ss_pred EEEecCcceEEEEEcCCCC---EEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 14 GFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 14 gIDiGttsiKa~l~d~~G~---~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
|||||+.++|++-++..++ +...+..++|...-. ++...|++ .+.+++.+++++.. + ..+
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~----~g~i~d~~----------~l~~~L~~~~~~~~--~-~~k 63 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAIS----DGEIVDPE----------ALAEALKELLKENK--I-KGK 63 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEE----TTEES-HH----------HHHHHHHHHHHHHT-------
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCcc----CCCcCCHH----------HHHHHHHHHHHHcC--C-CCC
Confidence 8999999999999997543 344455666521100 12233444 55555555555542 2 234
Q ss_pred EeEEEeecc
Q 015802 91 VTAVSGSGQ 99 (400)
Q Consensus 91 I~aIgis~~ 99 (400)
-..+++.+.
T Consensus 64 ~v~~aip~~ 72 (340)
T PF11104_consen 64 KVVLAIPGS 72 (340)
T ss_dssp EEEEEE-GG
T ss_pred eEEEEeCCC
Confidence 455777764
No 67
>PRK00976 hypothetical protein; Provisional
Probab=87.25 E-value=1.5 Score=42.98 Aligned_cols=21 Identities=19% Similarity=0.616 Sum_probs=18.0
Q ss_pred ceEEEEEecCcceEEEEEcCC
Q 015802 10 SLFLGFDSSTQSLKATVLDSN 30 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~ 30 (400)
.+++|||-|||.+|.++++.+
T Consensus 1 ~~~~g~dhgt~~~~~~~~~~~ 21 (326)
T PRK00976 1 MMFVGIDHGTTGIRFAIIEGG 21 (326)
T ss_pred CeEEeecCCCccEEEEEEcCC
Confidence 379999999999999999443
No 68
>PLN02596 hexokinase-like
Probab=86.59 E-value=1.7 Score=45.29 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=40.3
Q ss_pred eEEEEEecCcceEEEEEcCCCC---EEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc
Q 015802 11 LFLGFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~---~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (400)
.+|+||+|+||.|+++++-+|+ +....+..+++ |+ ....-..+ ++++-+.+++++.++.
T Consensus 97 ~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p~----~l~~~t~~----------eLFd~IA~~i~~fl~~ 158 (490)
T PLN02596 97 LYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISI--PS----NVLNGTSQ----------ELFDYIALELAKFVAE 158 (490)
T ss_pred EEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecC--Ch----HhhcCCHH----------HHHHHHHHHHHHHHHh
Confidence 6899999999999999998664 34443443432 11 11222344 8999999999997753
No 69
>PRK13326 pantothenate kinase; Reviewed
Probab=86.13 E-value=1.8 Score=41.34 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=21.3
Q ss_pred ceEEEEEecCcceEEEEEcCCCCEEEE
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLNIVAS 36 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~~v~~ 36 (400)
.++|.||+|-|++|.+++|. ++++..
T Consensus 6 ~~~L~IDiGNT~ik~glf~~-~~l~~~ 31 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKD-NKMQIF 31 (262)
T ss_pred cEEEEEEeCCCeEEEEEEEC-CEEEEE
Confidence 46899999999999999994 466653
No 70
>PLN02405 hexokinase
Probab=86.06 E-value=1.7 Score=45.26 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=41.4
Q ss_pred ceEEEEEecCcceEEEEEcCCCC---EEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~---~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (400)
-.|++||+|+||.|++++.-.|+ .+...+..+++ |.. ...-..+ ++++-+.+++++.++.
T Consensus 95 G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p~~----~~~gt~~----------~LFdfIA~~i~~fl~~ 157 (497)
T PLN02405 95 GLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSI--PPH----LMTGSSD----------ALFDFIAAALAKFVAT 157 (497)
T ss_pred eeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeec--Chh----hccCCHH----------HHHHHHHHHHHHHHHh
Confidence 37999999999999999997652 45544444442 211 1222334 8999999999997753
No 71
>PLN02362 hexokinase
Probab=85.92 E-value=1.7 Score=45.37 Aligned_cols=60 Identities=7% Similarity=0.147 Sum_probs=39.1
Q ss_pred ceEEEEEecCcceEEEEEcCCCC---EEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~---~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (400)
-.+++||+|+||.|+++++-.|+ ++...+..+++ |.. -.....+ ++++-+.+++++.++.
T Consensus 95 G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p~~----l~~~~~~----------eLFd~IA~~i~~fl~~ 157 (509)
T PLN02362 95 GTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPI--PQH----LMNSTSE----------VLFDFIASSLKQFVEK 157 (509)
T ss_pred eeEEEEecCCceEEEEEEEecCCCcceeeceeEEEec--Chh----hccCCHH----------HHHHHHHHHHHHHHHh
Confidence 37999999999999999997653 22221122221 111 1122334 8999999999998764
No 72
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.76 E-value=2.3 Score=46.05 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=48.2
Q ss_pred ceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCC
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLS 89 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (400)
.+.+|||+|+|.+=++++|.++.++...+..+. |+ .....+...++.+......+
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt---------------P~----------~~~~~~~~~~~~~~~~~~~~ 56 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT---------------PD----------LPSGIVNAGIRLALELLEGS 56 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC---------------CC----------chhhHHHHHHHHHhhccccc
Confidence 578999999999999999998767766666532 33 33344444555444321125
Q ss_pred CEeEEEeecccceeeEecCCCc
Q 015802 90 KVTAVSGSGQQHGSVYWKKGSA 111 (400)
Q Consensus 90 ~I~aIgis~~~~~~v~~d~~g~ 111 (400)
+|..+-+++.-.+=.++-+.|.
T Consensus 57 ~i~~v~~gTT~aTNallerkG~ 78 (674)
T COG0145 57 EVDLVVHGTTLATNALLERKGL 78 (674)
T ss_pred cccEEEEeccHHHHHHHhccCc
Confidence 6777777765444344444444
No 73
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=85.57 E-value=2.6 Score=40.57 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.8
Q ss_pred EEEEEecCcceEEEEEcCCCCEEE
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIVA 35 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v~ 35 (400)
.+|||+|+|-+|.+..|++++++.
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f 25 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKF 25 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEE
Confidence 589999999999999999888874
No 74
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=85.45 E-value=1 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEecCcceEEEEEcCCCCEE
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIV 34 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v 34 (400)
++|||-|||.+|.++++.+++..
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecCCcceE
Confidence 58999999999999999888654
No 75
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=85.41 E-value=2.3 Score=40.10 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=21.0
Q ss_pred EEEEEecCcceEEEEEcCCCCEEEEEEee
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v~~~~~~ 40 (400)
+|.||+|-|++|.++++. ++++...+.+
T Consensus 1 ~L~iDiGNT~i~~g~~~~-~~~~~~~r~~ 28 (243)
T TIGR00671 1 LLLIDVGNTRIVFALNSG-NKVYQFWRLA 28 (243)
T ss_pred CEEEEECCCcEEEEEEEC-CEEEEEEEec
Confidence 378999999999999984 4666544333
No 76
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=85.10 E-value=1.3 Score=42.29 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=28.7
Q ss_pred CCCceEEEEEecCcceEEEEEcCCCCEEEEEEe
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQL 39 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~ 39 (400)
|++..++.||=||||.|+-+++.+|+++.+.+-
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~ 34 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERRS 34 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcceeeeecc
Confidence 557889999999999999999999988876543
No 77
>PRK13320 pantothenate kinase; Reviewed
Probab=85.01 E-value=3.1 Score=39.32 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.2
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVA 35 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~ 35 (400)
++|.||+|.|++|.++++. ++++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~-~~~~~ 26 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEG-DELLE 26 (244)
T ss_pred eEEEEEeCCCcEEEEEEEC-CEEEE
Confidence 6899999999999999994 45554
No 78
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=83.75 E-value=7.3 Score=39.75 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=39.6
Q ss_pred eEEEEEecCcceEEEEEcC--CCC--EEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhh
Q 015802 11 LFLGFDSSTQSLKATVLDS--NLN--IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~--~G~--~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (400)
++.|+||||+++++.+--. +|+ ++...+.+.. |-+.+.-.|.+ ...+++.++++++-+
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~Sr------Gik~G~I~di~----------~~~~sI~~av~~AE~ 68 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSR------GIKKGVIVDLD----------AAAQSIKKAVEAAER 68 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCc------ccccceEEcHH----------HHHHHHHHHHHHHHH
Confidence 8999999999999998764 442 3333233221 11124667888 888888888888765
No 79
>PTZ00107 hexokinase; Provisional
Probab=83.48 E-value=1.8 Score=44.76 Aligned_cols=65 Identities=9% Similarity=0.093 Sum_probs=39.4
Q ss_pred ceEEEEEecCcceEEEEEcCCCC-EEEEEEeeccC--CCCCCCCCCc--eeeCCCCCCCcCCChhHHHHHHHHHHHHHhh
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLN-IVASEQLQFDS--ELPHYKTKDG--VYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~-~v~~~~~~~~~--~~~~~~~~g~--~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (400)
-.+|+||+|+||.|++++.-+|+ .....+..+.. .... +..+. .+...+ ++++-+.++++++++
T Consensus 74 G~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~-~~~~~~~k~~t~~----------~lFd~IA~~i~~fl~ 142 (464)
T PTZ00107 74 GVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALL-GEKGLLDKKATAT----------DLFDHIAKSIKKMME 142 (464)
T ss_pred ceEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhc-cccccccccCCHH----------HHHHHHHHHHHHHHH
Confidence 36999999999999999998654 33233333321 1100 00000 011233 899999999999876
Q ss_pred c
Q 015802 85 S 85 (400)
Q Consensus 85 ~ 85 (400)
.
T Consensus 143 ~ 143 (464)
T PTZ00107 143 E 143 (464)
T ss_pred h
Confidence 4
No 80
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=82.61 E-value=4.4 Score=42.37 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=44.6
Q ss_pred CCCceEEEEEecCcceEEEEEcC-CCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhh-
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDS-NLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK- 84 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~-~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~- 84 (400)
.+.+++..|||||.|+|.++++. +|.+....+....++....- ......+++ . .+...+++++..+
T Consensus 3 ~~~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~-~~~g~Ls~e----------~-i~r~~~~L~~F~~~ 70 (496)
T PRK11031 3 SSSSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGL-DSDNALSNE----------A-MERGWQCLRLFAER 70 (496)
T ss_pred CCCCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCc-CcCCCcCHH----------H-HHHHHHHHHHHHHH
Confidence 34678999999999999999996 45443333332222222100 000111222 2 3344444444332
Q ss_pred --cCCCCCEeEEEeeccc
Q 015802 85 --SLDLSKVTAVSGSGQQ 100 (400)
Q Consensus 85 --~~~~~~I~aIgis~~~ 100 (400)
.....+|++++-++.+
T Consensus 71 ~~~~~v~~i~~vATsAvR 88 (496)
T PRK11031 71 LQDIPPSQIRVVATATLR 88 (496)
T ss_pred HHhCCCCeEEEEEeHHHH
Confidence 2556788888887764
No 81
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=82.03 E-value=1.8 Score=44.50 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=30.9
Q ss_pred CCCCceEEEEEecCcceEEEEEcC-CCCEEEEEEeec
Q 015802 6 LPKDSLFLGFDSSTQSLKATVLDS-NLNIVASEQLQF 41 (400)
Q Consensus 6 ~~~~~~~lgIDiGttsiKa~l~d~-~G~~v~~~~~~~ 41 (400)
+.++.|=+++|+|||.+++-++|. +|++++++....
T Consensus 160 ~~~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n 196 (614)
T COG3894 160 LKNEAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSN 196 (614)
T ss_pred ccceeeeeEEecccceeeeEEEeccCCcEEEeeeccC
Confidence 567789999999999999999996 899998875443
No 82
>PRK10854 exopolyphosphatase; Provisional
Probab=81.21 E-value=4.8 Score=42.26 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=21.8
Q ss_pred CCCceEEEEEecCcceEEEEEcC-CCCE
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDS-NLNI 33 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~-~G~~ 33 (400)
+....+.+|||||.|+|..+++. +|.+
T Consensus 8 ~~~~~~A~IDIGSNSirL~I~e~~~~~~ 35 (513)
T PRK10854 8 PRPQEFAAVDLGSNSFHMVIARVVDGAM 35 (513)
T ss_pred CCCCEEEEEEeccchheEEEEEecCCcE
Confidence 44567999999999999999995 4433
No 83
>PLN02666 5-oxoprolinase
Probab=80.01 E-value=3.7 Score=47.64 Aligned_cols=86 Identities=6% Similarity=-0.041 Sum_probs=55.6
Q ss_pred CCCceEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHh---
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS--- 83 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~--- 83 (400)
-++.+.+|||+|+|-+-++++|.++..+...+.+.. .| .|++ +.+.+.+.++++.+.
T Consensus 6 ~~~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~st--tp---------~d~~---------~gv~~Gi~~~l~~~~~~~ 65 (1275)
T PLN02666 6 GSRKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSV--DP---------ANYD---------DAPREGIRRILEEVTGKK 65 (1275)
T ss_pred CCCCEEEEEECCcCCEeEEEEecCCCeEEEEEeCCC--CC---------CChh---------HHHHHHHHHHHHHHhcCC
Confidence 466799999999999999999987664445455431 11 1232 156777777777663
Q ss_pred ---hc-CCCCCEeEEEeecccceeeEecCCCcc
Q 015802 84 ---KS-LDLSKVTAVSGSGQQHGSVYWKKGSAT 112 (400)
Q Consensus 84 ---~~-~~~~~I~aIgis~~~~~~v~~d~~g~~ 112 (400)
+. +++++|..|..++...+=.++-++|..
T Consensus 66 ~~~~~~~~~~~i~~v~hGTT~atNAllerkGa~ 98 (1275)
T PLN02666 66 IPRSAKIPTERIEWIRMGTTVATNALLERKGER 98 (1275)
T ss_pred cccccCCChHHccEEEEechHHHHHHHhccCCc
Confidence 11 445678888887764444445555544
No 84
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=77.97 E-value=6.4 Score=38.22 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=17.0
Q ss_pred EEEEEecCcceEEEEEcCC
Q 015802 12 FLGFDSSTQSLKATVLDSN 30 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~ 30 (400)
+.+||+||.++|..+++.+
T Consensus 2 ~AvIDiGSNsirl~I~~~~ 20 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGV 20 (300)
T ss_pred eEEEEecCCeeeEEEEEec
Confidence 5789999999999999963
No 85
>PRK13331 pantothenate kinase; Reviewed
Probab=76.34 E-value=8.9 Score=36.38 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=20.8
Q ss_pred CceEEEEEecCcceEEEEEcCCCCEEE
Q 015802 9 DSLFLGFDSSTQSLKATVLDSNLNIVA 35 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~~G~~v~ 35 (400)
...+|.||+|-|++|.++||.+ +++.
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~~-~~~~ 31 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSGE-TLVK 31 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEECC-EEEE
Confidence 4568999999999999999943 4543
No 86
>PRK03011 butyrate kinase; Provisional
Probab=75.92 E-value=5.6 Score=39.80 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=24.1
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeecc
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFD 42 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~ 42 (400)
.+|.|.-|+||+|.++|+ +.+.+.+....++
T Consensus 3 ~il~inpgststk~a~~~-~~~~~~~~~~~h~ 33 (358)
T PRK03011 3 RILVINPGSTSTKIAVFE-DEKPIFEETLRHS 33 (358)
T ss_pred EEEEEcCCCchheEEEEc-CCceeeeeccccC
Confidence 489999999999999997 4455656655554
No 87
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=74.06 E-value=8.6 Score=37.78 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=37.3
Q ss_pred EEEEecCcceEEEEEcCCCCE---EEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCC
Q 015802 13 LGFDSSTQSLKATVLDSNLNI---VASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLS 89 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~---v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (400)
|.-|||+|++|.++++.++.. +...+.+ ..|-. .+.+.+.+.++++......-
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~--------------~~~~~----------s~~~~l~~~l~~~~~~~~~p 56 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYP--------------SADFP----------SFEDALADYLAELDAGGPEP 56 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEE--------------GCCCC----------HHHHHHHHHHHHTCHHHTCE
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEe--------------cCCcC----------CHHHHHHHHHHhcccCCCcc
Confidence 456999999999999986544 3332222 22444 56666666666542222223
Q ss_pred CEeEEEeecc
Q 015802 90 KVTAVSGSGQ 99 (400)
Q Consensus 90 ~I~aIgis~~ 99 (400)
+..+|++.++
T Consensus 57 ~~~~iavAGP 66 (316)
T PF02685_consen 57 DSACIAVAGP 66 (316)
T ss_dssp EEEEEEESS-
T ss_pred ceEEEEEecC
Confidence 4466777765
No 88
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=73.66 E-value=7.6 Score=36.87 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=19.6
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVAS 36 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~ 36 (400)
.++|||||+-|+|++. ++|.+...
T Consensus 4 kilGiDIGGAntk~a~--~DG~~~~~ 27 (330)
T COG1548 4 KILGIDIGGANTKIAS--SDGDNYKI 27 (330)
T ss_pred eEEEeeccCccchhhh--ccCCeeee
Confidence 4899999999999997 66766543
No 89
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=71.81 E-value=8.5 Score=36.50 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=24.0
Q ss_pred EEEEEecCcceEEEEEcCCCCEEEEEEeecc
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFD 42 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~ 42 (400)
+|.||+|.|+++.++++ +++++..-+..+.
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~~~~~~~r~~t~ 31 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GGKVVQTWRLATE 31 (251)
T ss_pred eEEEEeCCCeEEEEEec-CCeEEEEEeeccc
Confidence 68999999999999998 6676666555543
No 90
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=68.69 E-value=5.2 Score=43.34 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.0
Q ss_pred CCCceEEEEEecCcceEEEEEcC
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~ 29 (400)
|.+..++|||+|||+.++++++.
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeC
Confidence 56777999999999999998864
No 91
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=67.61 E-value=5.1 Score=41.82 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.3
Q ss_pred CceEEEEEecCcceEEEEEcCC
Q 015802 9 DSLFLGFDSSTQSLKATVLDSN 30 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~~ 30 (400)
.+.+.+||+||.|+|.++++..
T Consensus 2 ~~~~A~IDiGSNS~rlvV~~~~ 23 (492)
T COG0248 2 ARRVAAIDLGSNSFRLVVAEIT 23 (492)
T ss_pred CceEEEEEecCCeEEEEEEecc
Confidence 3568899999999999999964
No 92
>PRK09604 UGMP family protein; Validated
Probab=67.27 E-value=13 Score=36.78 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=44.7
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
++||||--+..+-++++|.+++++.............. ++. -|. ...++|.+.+...+.+++++.- .++.+
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~---~Gi--~P~--~a~~~H~~~l~~~i~~~L~~~~--~~~~d 72 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARY---GGV--VPE--LASRAHVENIVPLIEEALKEAG--LTLED 72 (332)
T ss_pred eEEEEEccccceEEEEEECCCcEEEEEEecchhccccc---CCc--Ccc--hhHHHHHHHHHHHHHHHHHHcC--CCHHH
Confidence 58999998878889999877788876553321111111 111 122 0112333344444444444322 56788
Q ss_pred EeEEEeec
Q 015802 91 VTAVSGSG 98 (400)
Q Consensus 91 I~aIgis~ 98 (400)
|.+|+++.
T Consensus 73 id~iavt~ 80 (332)
T PRK09604 73 IDAIAVTA 80 (332)
T ss_pred CCEEEEec
Confidence 99999986
No 93
>PRK11678 putative chaperone; Provisional
Probab=67.11 E-value=4.3 Score=41.92 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.3
Q ss_pred eEEEEEecCcceEEEEEcCCCCE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNI 33 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~ 33 (400)
+++|||+||||.-+++++ +|+.
T Consensus 1 ~~iGID~GTtNs~va~~~-~~~~ 22 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMR-DGKP 22 (450)
T ss_pred CeEEEecCccceeeEEee-CCce
Confidence 479999999999999997 4543
No 94
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=66.18 E-value=5.2 Score=43.07 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=17.3
Q ss_pred eEEEEEecCcceEEEEEcC
Q 015802 11 LFLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~ 29 (400)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999974
No 95
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=65.82 E-value=20 Score=36.25 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=44.2
Q ss_pred EEEEEecCcceEEEEEcC-CCCEEEEEEeeccCCCCCCCCCCceeeC--CCCCCCcCCChhHHHHHHHHHHHHHhhc---
Q 015802 12 FLGFDSSTQSLKATVLDS-NLNIVASEQLQFDSELPHYKTKDGVYRD--PSNNGRIVSPTLMWIEALDLMLQKLSKS--- 85 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~-~G~~v~~~~~~~~~~~~~~~~~g~~e~d--~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 85 (400)
+|.|..|+||+|..+||. +.+++.+....-- ..+.. ...+. .+....+.......-.++..+++.|.+.
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~~e~i-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~il~~L~~~~~~ 76 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLASGLVERI-GSPDS----EILHKVSGGQKEQEPTIIDQHEYALEAILDFLKEHGIG 76 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEEEEST-TSTTH----EEEEEECTTEEEEEESTSCSHHHHHHHHHHHHHHTTST
T ss_pred EEEEcCChHhheeeeEECCCCCeeeechheec-cCCcc----eeeeecCCCcccccccCCCCHHHHHHHHHHHHHhcCCc
Confidence 688999999999999997 4677766555421 11111 00000 0000000011113445566666666552
Q ss_pred CCCCCEeEEEeec
Q 015802 86 LDLSKVTAVSGSG 98 (400)
Q Consensus 86 ~~~~~I~aIgis~ 98 (400)
.+..+|.+||-=.
T Consensus 77 ~~~~~i~AVghRv 89 (388)
T PF00871_consen 77 FDLEEIDAVGHRV 89 (388)
T ss_dssp TCGGGEEEEEEEE
T ss_pred cccCceeEEEEee
Confidence 4567899988654
No 96
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=65.81 E-value=7.8 Score=41.40 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.0
Q ss_pred CceEEEEEecCcceEEEEEcCCC
Q 015802 9 DSLFLGFDSSTQSLKATVLDSNL 31 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~~G 31 (400)
.+.++|||+||||..+++++.++
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~ 26 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGG 26 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCC
Confidence 35799999999999999999764
No 97
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.74 E-value=7.4 Score=36.75 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.1
Q ss_pred ceEEEEEecCcceEEEEEcCCCCEEE
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLNIVA 35 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~~v~ 35 (400)
.+++|||-|||.+|.+++|.++.+..
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e~~~~F 28 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGEKDPEF 28 (332)
T ss_pred eEEEeecCCCcceEEEEEcCCCCceE
Confidence 46999999999999999998775543
No 98
>PRK12440 acetate kinase; Reviewed
Probab=64.63 E-value=9.8 Score=38.47 Aligned_cols=33 Identities=33% Similarity=0.254 Sum_probs=27.2
Q ss_pred CCCceEEEEEecCcceEEEEEcC-CCCEEEEEEe
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDS-NLNIVASEQL 39 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~-~G~~v~~~~~ 39 (400)
|+++++|.|..|+||+|..+||. +.+++.+...
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G~~ 34 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSGLG 34 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEEEEEE
Confidence 67899999999999999999996 4566665544
No 99
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=63.17 E-value=5.6 Score=39.32 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.8
Q ss_pred EEEecCcceEEEEEcCCCCEEEEEEeecc
Q 015802 14 GFDSSTQSLKATVLDSNLNIVASEQLQFD 42 (400)
Q Consensus 14 gIDiGttsiKa~l~d~~G~~v~~~~~~~~ 42 (400)
|||-||+|...+.+|.+|+++...+.+..
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~ 29 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTE 29 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEEEEeeccHH
Confidence 79999999999999999999988777654
No 100
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=62.54 E-value=7.4 Score=39.58 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=38.9
Q ss_pred CCceEEEEEecCcceEEEEEcC--CCCEEEEEEeeccCCCCCCCCCCce-eeCCCCCCCcCCChhHHHHHHHHHHHHHhh
Q 015802 8 KDSLFLGFDSSTQSLKATVLDS--NLNIVASEQLQFDSELPHYKTKDGV-YRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (400)
Q Consensus 8 ~~~~~lgIDiGttsiKa~l~d~--~G~~v~~~~~~~~~~~~~~~~~g~~-e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (400)
+..-+|+||+|+||.|.+++.- +|+..-+-+... .|.. .. .+.++ ++|..++..++...+
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~sks~---lp~e----~~~~~~~~----------~l~~~iadrl~~fi~ 135 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQSKSF---LPVE----CRDSESRD----------ELFGFIADRLAAFIK 135 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccccCccc---Cchh----hccCCChH----------HHHHHHHHHHHHHHH
Confidence 4456999999999999999985 454443222111 1211 11 11444 899999999888765
Q ss_pred c
Q 015802 85 S 85 (400)
Q Consensus 85 ~ 85 (400)
.
T Consensus 136 ~ 136 (466)
T COG5026 136 E 136 (466)
T ss_pred H
Confidence 3
No 101
>CHL00094 dnaK heat shock protein 70
Probab=60.46 E-value=7.7 Score=41.75 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.5
Q ss_pred eEEEEEecCcceEEEEEcCCCCE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNI 33 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~ 33 (400)
+++|||+|||+.++++++. |++
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~~ 24 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEG-GKP 24 (621)
T ss_pred ceEEEEeCcccEEEEEEEC-CEE
Confidence 6899999999999999863 443
No 102
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=60.39 E-value=9.8 Score=31.52 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=15.3
Q ss_pred EEEEEecCcceEEEEEcC
Q 015802 12 FLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~ 29 (400)
+++||+|++.++++++..
T Consensus 1 i~~iDiGs~~~~~~i~~~ 18 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED 18 (120)
T ss_dssp EEEEEE-SSSEEEEEEET
T ss_pred CEEEEcCCCcEEEEEEEe
Confidence 578999999999999976
No 103
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=59.36 E-value=10 Score=36.69 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=19.9
Q ss_pred EecCcceEEEEEcCCCCEEEEEEeecc
Q 015802 16 DSSTQSLKATVLDSNLNIVASEQLQFD 42 (400)
Q Consensus 16 DiGttsiKa~l~d~~G~~v~~~~~~~~ 42 (400)
|-||||.|+-++|.+|+++.+.+.+..
T Consensus 1 DWGTSnlR~~l~~~~g~vl~~~~~~~G 27 (287)
T PF05035_consen 1 DWGTSNLRAWLMDEDGQVLAERSSPVG 27 (287)
T ss_dssp EE-SS-EEEEEE-CTTEEEEEEEES--
T ss_pred CCchhhhhhheecCCCcEEeeecCCcC
Confidence 789999999999999999988776543
No 104
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=59.25 E-value=15 Score=35.77 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=44.8
Q ss_pred EEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCCEe
Q 015802 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVT 92 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~ 92 (400)
||||--+..+-++++|.+++++.............. |++.+... .++|.+.+...+.+++++.- .++++|.
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~---gGi~p~~~----~~~H~~~l~~~i~~~l~~~~--~~~~did 71 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKY---GGVVPEEA----SRHHAENIPPLLERALIESN--VDKSEID 71 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEeccccccccc---CCcCcchh----HHHHHHHHHHHHHHHHHHcC--CCHHHCC
Confidence 589999999999999866788877655443211111 22222221 22333344444444444321 5678899
Q ss_pred EEEeec
Q 015802 93 AVSGSG 98 (400)
Q Consensus 93 aIgis~ 98 (400)
+|+++.
T Consensus 72 ~iav~~ 77 (305)
T TIGR00329 72 LIAYTQ 77 (305)
T ss_pred EEEEec
Confidence 999987
No 105
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=58.23 E-value=9.1 Score=41.19 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.5
Q ss_pred ceEEEEEecCcceEEEEEcC
Q 015802 10 SLFLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~ 29 (400)
.+++|||+|||+.++++++.
T Consensus 19 ~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CeEEEEEeccccEEEEEEEC
Confidence 48999999999999988853
No 106
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=58.20 E-value=18 Score=31.00 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=25.8
Q ss_pred CCceEEEEEecCcceEEEEEcCCCCEEEEEEee
Q 015802 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (400)
Q Consensus 8 ~~~~~lgIDiGttsiKa~l~d~~G~~v~~~~~~ 40 (400)
++.+++|||=|||.--|+ +|-+|+++...+..
T Consensus 30 ~~~lIVGiDPG~ttgiAi-ldL~G~~l~l~S~R 61 (138)
T PF04312_consen 30 RRYLIVGIDPGTTTGIAI-LDLDGELLDLKSSR 61 (138)
T ss_pred CCCEEEEECCCceeEEEE-EecCCcEEEEEeec
Confidence 445899999999876554 69999999887654
No 107
>PRK13410 molecular chaperone DnaK; Provisional
Probab=58.17 E-value=9.6 Score=41.44 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.4
Q ss_pred eEEEEEecCcceEEEEEcCCCCE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNI 33 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~ 33 (400)
.++|||+|||+.++++++. |+.
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~~ 24 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEG-GKP 24 (668)
T ss_pred cEEEEEeCCCcEEEEEEEC-CeE
Confidence 5899999999999999864 443
No 108
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=57.83 E-value=20 Score=30.28 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.3
Q ss_pred EEEEEecCcceEEEEEcCCCCEEEEEEee
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v~~~~~~ 40 (400)
++|||+|-...-++++|.+|+++......
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~~ 29 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKFE 29 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEEe
Confidence 68999999999999999999666655444
No 109
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=57.67 E-value=8.8 Score=41.04 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.9
Q ss_pred eEEEEEecCcceEEEEEcC
Q 015802 11 LFLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~ 29 (400)
.++|||+|||+.++++++.
T Consensus 1 ~viGIDlGtt~s~va~~~~ 19 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEG 19 (595)
T ss_pred CEEEEEeCcccEEEEEEEC
Confidence 3799999999999999874
No 110
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=57.41 E-value=7.8 Score=41.19 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.3
Q ss_pred EEEEEecCcceEEEEEcC
Q 015802 12 FLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~ 29 (400)
++|||+|||++++++++.
T Consensus 1 viGID~Gt~~~~va~~~~ 18 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN 18 (602)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEeccCCEEEEEEEe
Confidence 689999999999999874
No 111
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=56.81 E-value=11 Score=41.01 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.2
Q ss_pred ceEEEEEecCcceEEEEEcCC
Q 015802 10 SLFLGFDSSTQSLKATVLDSN 30 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~ 30 (400)
..++|||+|||+.++++++..
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~ 47 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD 47 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC
Confidence 369999999999999998753
No 112
>PRK07058 acetate kinase; Provisional
Probab=56.73 E-value=16 Score=36.97 Aligned_cols=33 Identities=12% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCCceEEEEEecCcceEEEEEcCCC---CEEEEEEe
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDSNL---NIVASEQL 39 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~~G---~~v~~~~~ 39 (400)
|.++++|.|..|+||+|..+||.+. +++.....
T Consensus 1 ~~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G~~ 36 (396)
T PRK07058 1 MSKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKGDI 36 (396)
T ss_pred CCCCEEEEEECChHhheeEEEecCCCCceEEEEEEE
Confidence 4678999999999999999999643 46665544
No 113
>PRK13411 molecular chaperone DnaK; Provisional
Probab=56.30 E-value=10 Score=41.07 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=17.1
Q ss_pred eEEEEEecCcceEEEEEcC
Q 015802 11 LFLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~ 29 (400)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG 21 (653)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999864
No 114
>PRK13322 pantothenate kinase; Reviewed
Probab=54.86 E-value=11 Score=35.47 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=19.8
Q ss_pred eEEEEEecCcceEEEEEcCCCCEE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIV 34 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v 34 (400)
++|.||+|-|++|..++|.+++++
T Consensus 1 M~L~IDiGNT~iK~~l~~~~~~~~ 24 (246)
T PRK13322 1 MILELDCGNSRLKWRVIDNGGQII 24 (246)
T ss_pred CEEEEEeCCCcEEEEEEcCCCchh
Confidence 378899999999999999645544
No 115
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=53.57 E-value=36 Score=33.89 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=46.7
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
.+||||--+..+-++++|.+|+++........ ...| +++ -|+ ...++|.+.+...+.+++++.- ...++
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~---~~~G--~Gv--vP~--~a~r~H~~~l~~~i~~~l~~a~--~~~~d 70 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGEILSNVRETYI---TPPG--TGF--LPR--ETAQHHREHILSLVKEALEEAK--ITPSD 70 (345)
T ss_pred eEEEEEccchhhEEEEEECCCcEEEEEEeecc---ccCC--CCc--Cch--HHHHHHHHHHHHHHHHHHHHcC--CCHHH
Confidence 58999999999999999988888776544332 1111 011 121 1223444444444444444321 56778
Q ss_pred EeEEEeec
Q 015802 91 VTAVSGSG 98 (400)
Q Consensus 91 I~aIgis~ 98 (400)
|.+|+++.
T Consensus 71 id~Iavt~ 78 (345)
T PTZ00340 71 ISLICYTK 78 (345)
T ss_pred CCEEEEec
Confidence 99999986
No 116
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=53.53 E-value=23 Score=35.58 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=44.6
Q ss_pred eEEEEEecCcceEEEEEcC-CCCEEEEEEee-ccCCCCCCCCCCc--eeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc-
Q 015802 11 LFLGFDSSTQSLKATVLDS-NLNIVASEQLQ-FDSELPHYKTKDG--VYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS- 85 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~-~G~~v~~~~~~-~~~~~~~~~~~g~--~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 85 (400)
.+|.|..|+||+|..+||. +++++.+.-.+ +.. +. .. .+.+.....+.+.+...--+++..+++.+.+.
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~~Gl~Erig~--~~----~~~~~~~~~~~~~~~~~~~~dh~~al~~l~~~l~~~~ 75 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLASGLAERIGL--PD----AIITIKFDGKQKLELEADIADHKEALKLLLETLEEHK 75 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchhhhhHHHcCC--CC----ceEEEEecCccceeeecCCCCHHHHHHHHHHHHHhcc
Confidence 5789999999999999997 46666664432 110 00 00 01110001111222124556676777776653
Q ss_pred --CCCCCEeEEEee
Q 015802 86 --LDLSKVTAVSGS 97 (400)
Q Consensus 86 --~~~~~I~aIgis 97 (400)
.+..+|.+||-=
T Consensus 76 ii~~~~~I~~vGHR 89 (396)
T COG0282 76 IIKSLDEIDAVGHR 89 (396)
T ss_pred hhcchhhhcEEeeE
Confidence 345788888754
No 117
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=53.14 E-value=31 Score=35.63 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=24.2
Q ss_pred EEecCcceEEEEEcC-CCCEEEEEEeeccC
Q 015802 15 FDSSTQSLKATVLDS-NLNIVASEQLQFDS 43 (400)
Q Consensus 15 IDiGttsiKa~l~d~-~G~~v~~~~~~~~~ 43 (400)
+|+|+|-+|+.+||. +++++..++...++
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpT 30 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPI 30 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCcc
Confidence 599999999999995 57888888777653
No 118
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=51.50 E-value=12 Score=36.73 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=16.4
Q ss_pred EEEEecCcceEEEEEcCCCCEEE
Q 015802 13 LGFDSSTQSLKATVLDSNLNIVA 35 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v~ 35 (400)
+|||+||+++++... .+|.++.
T Consensus 5 ~giDlGt~~s~i~~~-~~~~~~~ 26 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGIVLN 26 (333)
T ss_pred eEEecCcceEEEEEC-CCCEEEe
Confidence 899999999997663 4555443
No 119
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=50.74 E-value=14 Score=40.09 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=16.8
Q ss_pred eEEEEEecCcceEEEEEcC
Q 015802 11 LFLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~ 29 (400)
.++|||+|||+.++++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~ 60 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEG 60 (663)
T ss_pred cEEEEEECcccEEEEEEeC
Confidence 4899999999999998863
No 120
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=50.74 E-value=16 Score=39.20 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=16.8
Q ss_pred ceEEEEEecCcceEEEEEc
Q 015802 10 SLFLGFDSSTQSLKATVLD 28 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d 28 (400)
.+++|||+|||+..++++.
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 4689999999999988875
No 121
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=50.42 E-value=62 Score=28.12 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=19.8
Q ss_pred eEEEEEecCc----ceEEEEEcCCCCEEEEEEe
Q 015802 11 LFLGFDSSTQ----SLKATVLDSNLNIVASEQL 39 (400)
Q Consensus 11 ~~lgIDiGtt----siKa~l~d~~G~~v~~~~~ 39 (400)
-+|+|-.|.. .++++++|++|+++...+.
T Consensus 6 rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 6 RVLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp -EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred EEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 4677887744 5999999999999988777
No 122
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=49.92 E-value=17 Score=38.94 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=16.1
Q ss_pred EEEEEecCcceEEEEEcC
Q 015802 12 FLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~ 29 (400)
++|||+|||+.++++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 489999999999999874
No 123
>PRK07157 acetate kinase; Provisional
Probab=49.17 E-value=95 Score=31.55 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=22.9
Q ss_pred EEEEEecCcceEEEEEcC-CCCEEEEEEe
Q 015802 12 FLGFDSSTQSLKATVLDS-NLNIVASEQL 39 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~-~G~~v~~~~~ 39 (400)
+|.|..|+||+|..+||. +.+++....+
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~~ 33 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIASGLA 33 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEEEEEE
Confidence 899999999999999996 4466665554
No 124
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=49.15 E-value=24 Score=34.61 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=44.1
Q ss_pred EEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCCEe
Q 015802 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVT 92 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~ 92 (400)
||||-.+..+-+++++.+++++.......... . |+..+.. ..++|.+.+...+.+|++++- ++..+|.
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~~~~---~---gg~~p~~----~~~~H~~~l~~~i~~~l~~~~--~~~~did 68 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTYVPE---K---GGIHPRE----AAEHHAEVAPKLIKEALEEAG--VSLEDID 68 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeecccC---c---CCcChhH----HHHHHHHHHHHHHHHHHHHcC--CCHHHCC
Confidence 68898888888999987788887665544211 1 1222111 112333345555555555421 5677899
Q ss_pred EEEeec
Q 015802 93 AVSGSG 98 (400)
Q Consensus 93 aIgis~ 98 (400)
+|+++.
T Consensus 69 ~Iavt~ 74 (322)
T TIGR03722 69 AVAFSQ 74 (322)
T ss_pred EEEEec
Confidence 999986
No 125
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=49.01 E-value=39 Score=35.08 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=38.6
Q ss_pred CceEEEEEecCcceEEEEEcCCCC--EEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhh
Q 015802 9 DSLFLGFDSSTQSLKATVLDSNLN--IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~~G~--~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (400)
+.-+++||+|+||.|+.++.-+|. .+......|. .|.. ...-..+ ++|+.+..++....+
T Consensus 85 ~G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~--ip~~----~m~gt~~----------~Lfd~Ia~~l~~F~~ 146 (474)
T KOG1369|consen 85 KGKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYA--IPEE----IMQGTGE----------ELFDFIARCLADFLD 146 (474)
T ss_pred CCCEEEEecCCCceEEEEEEecCCcccceeeeeeEe--cCHH----HHcCchH----------HHHHHHHHHHHHHHH
Confidence 447999999999999999997655 2333322222 1111 1111333 899999999998665
No 126
>PLN03184 chloroplast Hsp70; Provisional
Probab=48.02 E-value=16 Score=39.72 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=16.9
Q ss_pred eEEEEEecCcceEEEEEcC
Q 015802 11 LFLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~ 29 (400)
.++|||+|||+.++++++.
T Consensus 40 ~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CEEEEEeCcCcEEEEEEEC
Confidence 4899999999999999864
No 127
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=46.48 E-value=35 Score=33.41 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=43.1
Q ss_pred EEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCCE
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I 91 (400)
+|+||--+..+-++++|.+++++.............. |+.-+... ..+|.+.+...+.+++++.- .+.++|
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~---gGi~p~~~----~~~H~~~l~~~i~~~l~~~~--~~~~~i 71 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARY---GGVVPELA----SRAHLEAIPPLIEEALAEAG--LTLSDI 71 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEeehhhhccCc---CCcCcchh----HHHHHHHHHHHHHHHHHHcC--CCHHHC
Confidence 4899999999999999865557766554221101110 12222211 12333344444444444321 566789
Q ss_pred eEEEeec
Q 015802 92 TAVSGSG 98 (400)
Q Consensus 92 ~aIgis~ 98 (400)
.+|+++.
T Consensus 72 d~iav~~ 78 (314)
T TIGR03723 72 DAIAVTA 78 (314)
T ss_pred CEEEEec
Confidence 9999986
No 128
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=45.99 E-value=16 Score=35.79 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=17.1
Q ss_pred CCCCCCceEEEEEecCcceEEEEE
Q 015802 4 YSLPKDSLFLGFDSSTQSLKATVL 27 (400)
Q Consensus 4 ~~~~~~~~~lgIDiGttsiKa~l~ 27 (400)
++.+.+. +|||+||+++|+...
T Consensus 4 ~~~~~~~--vgiDlGt~~t~i~~~ 25 (335)
T PRK13930 4 FGFFSKD--IGIDLGTANTLVYVK 25 (335)
T ss_pred hhhhccc--eEEEcCCCcEEEEEC
Confidence 3445555 999999999999874
No 129
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=45.29 E-value=49 Score=34.78 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=45.0
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (400)
++||||--+..+-+++++.+|+++........ .+. |+.- |+ .....|.+.+...+.+++++.- ++..+
T Consensus 2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~~~--~~~----gg~~--p~--~~~~~H~~~l~~~i~~~l~~~~--~~~~~ 69 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDPYK--PPS----GGIH--PR--EAAEHHAEAIPKVIKEALEEAG--LKPED 69 (535)
T ss_pred EEEEEEccccceEEEEEeCCCcEEEEEEeecc--CCc----CCCC--hH--HHHHHHHHHHHHHHHHHHHHcC--CCHhh
Confidence 68999999999999999977788877654422 111 1222 22 0112233333344444444321 56788
Q ss_pred EeEEEeec
Q 015802 91 VTAVSGSG 98 (400)
Q Consensus 91 I~aIgis~ 98 (400)
|.+|+++.
T Consensus 70 id~iav~~ 77 (535)
T PRK09605 70 IDLVAFSQ 77 (535)
T ss_pred CCEEEECC
Confidence 99999984
No 130
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=44.15 E-value=1.3e+02 Score=29.46 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=19.0
Q ss_pred CceEEEEEecCcceEEEEEcC-CCCEEE
Q 015802 9 DSLFLGFDSSTQSLKATVLDS-NLNIVA 35 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~-~G~~v~ 35 (400)
-..++| |||+||.|.+++.. +++...
T Consensus 6 ~p~Lvg-DIGGTnaRfaLv~~a~~~~~~ 32 (320)
T COG0837 6 YPRLVG-DIGGTNARFALVEIAPAEPLQ 32 (320)
T ss_pred CceEEE-ecCCcceEEEEeccCCCCccc
Confidence 345666 99999999999775 454443
No 131
>PRK13328 pantothenate kinase; Reviewed
Probab=44.14 E-value=25 Score=33.37 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.1
Q ss_pred eEEEEEecCcceEEEEEcCCCCEE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIV 34 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v 34 (400)
++|-||+|.|++|-+++|.+++++
T Consensus 2 M~LliDiGNTriKwa~~~~~~~~~ 25 (255)
T PRK13328 2 MILLIDAGNSRIKWAWADAGRPWV 25 (255)
T ss_pred cEEEEEeCccceeEEEEcCCCcee
Confidence 478899999999999999765554
No 132
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=43.79 E-value=22 Score=32.38 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.5
Q ss_pred EEEEEecCcceEEEEEcCC
Q 015802 12 FLGFDSSTQSLKATVLDSN 30 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~ 30 (400)
+|.||+|-|++|.+++|.+
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 5789999999999999877
No 133
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=43.33 E-value=16 Score=35.90 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=15.7
Q ss_pred EEEEecCcceEEEEEcCCCCEE
Q 015802 13 LGFDSSTQSLKATVLDSNLNIV 34 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v 34 (400)
+|||+||+++|+... .+|.++
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~ 26 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVL 26 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEE
Confidence 899999999998664 344443
No 134
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=41.98 E-value=20 Score=39.88 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.1
Q ss_pred ceEEEEEecCcceEEEEEcCCCC
Q 015802 10 SLFLGFDSSTQSLKATVLDSNLN 32 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G~ 32 (400)
+|+||+||||+||==+|+|.+-+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~~ 23 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDYK 23 (805)
T ss_pred CceeEEeecccceeEEEEecccc
Confidence 47899999999999999997643
No 135
>PRK12397 propionate kinase; Reviewed
Probab=41.72 E-value=36 Score=34.60 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=25.3
Q ss_pred CCCceEEEEEecCcceEEEEEcC-CCCEEEEEEe
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDS-NLNIVASEQL 39 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~-~G~~v~~~~~ 39 (400)
|+++ +|.|..|+||+|..+||. +.+++.....
T Consensus 1 ~~~~-iLvlN~GSSSlKf~lf~~~~~~~l~~G~v 33 (404)
T PRK12397 1 MSYK-IMAINAGSSSLKFQLLEMPQGDMLCQGLI 33 (404)
T ss_pred CCCc-EEEEECChHhheEEEEECCCCceEEEEEE
Confidence 5556 899999999999999996 4566666554
No 136
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=38.61 E-value=31 Score=33.70 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=12.8
Q ss_pred EEEEEecCcceEEEE
Q 015802 12 FLGFDSSTQSLKATV 26 (400)
Q Consensus 12 ~lgIDiGttsiKa~l 26 (400)
.+|||+||+++|+..
T Consensus 7 ~igIDlGt~~~~i~~ 21 (334)
T PRK13927 7 DLGIDLGTANTLVYV 21 (334)
T ss_pred eeEEEcCcceEEEEE
Confidence 489999999999853
No 137
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=37.20 E-value=41 Score=30.53 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=38.7
Q ss_pred EEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCCE
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I 91 (400)
+|+||--|..+-+++++ +++++........ .. |.+.+...+.+++++.- ...++|
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~~~~------------~~----------h~~~l~~~i~~~l~~~~--~~~~~i 55 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSEEAG------------RN----------HSEILLPMIEELLAEAG--LSLQDL 55 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEeehhh------------HH----------HHHHHHHHHHHHHHHcC--CCHHHC
Confidence 47899999999999988 6677655433211 01 11145555555555432 556788
Q ss_pred eEEEeec
Q 015802 92 TAVSGSG 98 (400)
Q Consensus 92 ~aIgis~ 98 (400)
.+|+++.
T Consensus 56 ~~iav~~ 62 (202)
T TIGR03725 56 DAIAVGV 62 (202)
T ss_pred CEEEEec
Confidence 8998886
No 138
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=37.14 E-value=49 Score=33.62 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=23.2
Q ss_pred eEEEEEecCcceEEEEEcCC--CCEEEEEEe
Q 015802 11 LFLGFDSSTQSLKATVLDSN--LNIVASEQL 39 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~--G~~v~~~~~ 39 (400)
.+|.|..|+||+|..+||.+ .+++....+
T Consensus 5 ~iLvlN~GSSSlKf~lf~~~~~~~~l~~G~~ 35 (404)
T TIGR00016 5 KILVINAGSSSLKFALFDYTNGETVLLSGLA 35 (404)
T ss_pred eEEEEECChHhheEEEEecCCCCceEEEEEE
Confidence 38999999999999999964 466665544
No 139
>PRK12379 propionate/acetate kinase; Provisional
Probab=36.89 E-value=53 Score=33.29 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=25.6
Q ss_pred CCceEEEEEecCcceEEEEEcCC-CCEEEEEEe
Q 015802 8 KDSLFLGFDSSTQSLKATVLDSN-LNIVASEQL 39 (400)
Q Consensus 8 ~~~~~lgIDiGttsiKa~l~d~~-G~~v~~~~~ 39 (400)
+-+++|.|..|+||+|..+||.+ .+++....+
T Consensus 3 ~~~~iLvlN~GSSSlK~~l~~~~~~~~l~~G~v 35 (396)
T PRK12379 3 EFPVVLVINCGSSSIKFSVLDASDCEVLMSGIA 35 (396)
T ss_pred cCCEEEEEECChHhheEEEEECCCCceEEEEEE
Confidence 44789999999999999999964 466665554
No 140
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=36.84 E-value=88 Score=34.40 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=25.6
Q ss_pred CceEEEEEecCcc-eEEEEEcCCCCEEEEEEe
Q 015802 9 DSLFLGFDSSTQS-LKATVLDSNLNIVASEQL 39 (400)
Q Consensus 9 ~~~~lgIDiGtts-iKa~l~d~~G~~v~~~~~ 39 (400)
.+.++|+|-|.-. +|.+++|..|..+....+
T Consensus 329 ~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~I 360 (780)
T COG2183 329 PKATLGLDPGFRTGCKVAVVDDTGKLLDTATI 360 (780)
T ss_pred CcceeecCCccccccEEEEEcCCCceeceeEE
Confidence 3479999999754 999999999999987644
No 141
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=35.50 E-value=51 Score=31.81 Aligned_cols=49 Identities=18% Similarity=0.370 Sum_probs=35.0
Q ss_pred EEEEecCcceEEEEEc-CCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHH
Q 015802 13 LGFDSSTQSLKATVLD-SNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQK 81 (400)
Q Consensus 13 lgIDiGttsiKa~l~d-~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~ 81 (400)
+|||-||.|+-+.-|| +.|+++.....+.. -++.+|. .+.+.+...-.+
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rd----------eVtk~p~----------iiv~ii~e~~~e 50 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRD----------EVTKSPR----------IIVDIIEEVQAE 50 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHH----------HhccCch----------HHHHHHHHHhhh
Confidence 5899999999888877 58999987766653 2667777 665555544433
No 142
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=35.20 E-value=29 Score=34.20 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=11.3
Q ss_pred EEEEEecCcceEE
Q 015802 12 FLGFDSSTQSLKA 24 (400)
Q Consensus 12 ~lgIDiGttsiKa 24 (400)
.+|||+||++++.
T Consensus 6 ~~giDlGt~~~~i 18 (335)
T PRK13929 6 EIGIDLGTANILV 18 (335)
T ss_pred eEEEEcccccEEE
Confidence 4899999999973
No 143
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=33.15 E-value=29 Score=34.29 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=10.9
Q ss_pred EEEEEecCcceEEE
Q 015802 12 FLGFDSSTQSLKAT 25 (400)
Q Consensus 12 ~lgIDiGttsiKa~ 25 (400)
-+|||+||++++..
T Consensus 3 ~igIDLGT~~t~i~ 16 (326)
T PF06723_consen 3 DIGIDLGTSNTRIY 16 (326)
T ss_dssp EEEEEE-SSEEEEE
T ss_pred ceEEecCcccEEEE
Confidence 48999999998773
No 144
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=32.51 E-value=37 Score=37.28 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.0
Q ss_pred CCCceEEEEEecCcceEEEEEcCC
Q 015802 7 PKDSLFLGFDSSTQSLKATVLDSN 30 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d~~ 30 (400)
|+++|+||+|||+.||==+++.-+
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~d 24 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVEDD 24 (1088)
T ss_pred CCcceEEEeeccccceeeEEeecc
Confidence 688999999999999977766543
No 145
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=31.91 E-value=89 Score=27.01 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=21.6
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVAS 36 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~ 36 (400)
.+++||+|+-|.=-++++.+++.+..
T Consensus 2 ii~sIDiGikNlA~~iie~~~~~i~~ 27 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFEGNKIRV 27 (143)
T ss_pred eEEEEecCCCceeEEEEEcCCCeEEE
Confidence 58999999999999999987665543
No 146
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=31.68 E-value=1e+02 Score=30.53 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=44.9
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhc--CCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (400)
++|||.---..+-+++++.++ +++.....+-...+.. |+ .-|+ ...++|.+ .+..+++++++. ++.
T Consensus 2 ~iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~---GG--VvPe--~Asr~H~e----~i~~li~~al~eA~~~~ 69 (342)
T COG0533 2 IILGIETSCDETGVAIVDEEK-ILANVVASQIELHARY---GG--VVPE--LASRHHVE----NIPPLIEEALAEAGVSL 69 (342)
T ss_pred eEEEEEcccccceeEEEeccC-hhheehhhcccccCCC---CC--cCcc--HHHHHHHH----HHHHHHHHHHHHcCCCc
Confidence 478888777778889998776 5554333222112221 11 2233 22334444 444555554432 557
Q ss_pred CCEeEEEeecccceee
Q 015802 89 SKVTAVSGSGQQHGSV 104 (400)
Q Consensus 89 ~~I~aIgis~~~~~~v 104 (400)
++|.+|++|. +.|++
T Consensus 70 ~dID~IA~T~-gPGL~ 84 (342)
T COG0533 70 EDIDAIAVTA-GPGLG 84 (342)
T ss_pred ccCCEEEEec-CCCch
Confidence 8999999996 34543
No 147
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=31.61 E-value=78 Score=27.33 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=17.8
Q ss_pred EEEEEecCcceEEEEEcCCCCEE
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIV 34 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v 34 (400)
+||||-|++++=-++++.+++.+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~ 23 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKL 23 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEE
Confidence 68999999999999999866443
No 148
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=31.10 E-value=51 Score=32.04 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=20.7
Q ss_pred EEEEEecCcceEEEEEcCCCCEEE
Q 015802 12 FLGFDSSTQSLKATVLDSNLNIVA 35 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~~v~ 35 (400)
--.||||++-.|++.+|++|++..
T Consensus 127 ~tIIDIGGQDsK~I~~d~~G~v~d 150 (293)
T TIGR03192 127 RTILDMGGQDCKAIHCDEKGKVTN 150 (293)
T ss_pred CEEEEeCCCceEEEEEcCCCcEee
Confidence 345899999999999999998763
No 149
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=30.28 E-value=2.5e+02 Score=24.66 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=19.9
Q ss_pred eEEEEEecCcceEEEEEcCCCC
Q 015802 11 LFLGFDSSTQSLKATVLDSNLN 32 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~ 32 (400)
.+||||-|++++=-++++.+|+
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEecCC
Confidence 5899999999999999998776
No 150
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=28.68 E-value=60 Score=31.00 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=19.8
Q ss_pred EEEEecCcceEEEEEcCCCCEE
Q 015802 13 LGFDSSTQSLKATVLDSNLNIV 34 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v 34 (400)
-.||||++-.|++.+|++|++.
T Consensus 100 tIiDIGGQD~K~I~~~~~G~v~ 121 (262)
T TIGR02261 100 AVLDIGALHGRAIRMDERGKVE 121 (262)
T ss_pred EEEEeCCCceEEEEEcCCCcEe
Confidence 4589999999999999999885
No 151
>PRK13329 pantothenate kinase; Reviewed
Probab=28.56 E-value=39 Score=31.95 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.8
Q ss_pred eEEEEEecCcceEEEEEcC
Q 015802 11 LFLGFDSSTQSLKATVLDS 29 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~ 29 (400)
+.|-||+|-|.+|.+++|.
T Consensus 2 m~LliD~GNTriKw~~~~~ 20 (249)
T PRK13329 2 TFLAIDVGNTRLKWGLYDA 20 (249)
T ss_pred CEEEEEcCcchheeeEecc
Confidence 3778999999999999993
No 152
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=28.01 E-value=89 Score=26.05 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhhc--CCCCCEeEEEeecc
Q 015802 69 LMWIEALDLMLQKLSKS--LDLSKVTAVSGSGQ 99 (400)
Q Consensus 69 ~~~~~~~~~~~~~l~~~--~~~~~I~aIgis~~ 99 (400)
++++++..+++.++.+. +++++|.+|-||..
T Consensus 16 e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T 48 (118)
T PF07736_consen 16 EEILEATRELLEEILERNELSPEDIVSIIFTVT 48 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 49999999999998874 78899999999975
No 153
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=26.59 E-value=94 Score=26.50 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.5
Q ss_pred eEEEEEecCcceEEEEEcCCCCEE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIV 34 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v 34 (400)
.+||||+|+..+=.++-|..+.+.
T Consensus 5 ~iLalD~G~kriGvAv~d~~~~~a 28 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDPLGGTA 28 (138)
T ss_pred cEEEEEeCCCEEEEEEecCCCCEE
Confidence 499999999999999998877653
No 154
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=26.15 E-value=1.3e+02 Score=27.77 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=24.7
Q ss_pred eEEEEEecCcceEEEEEcC-CCCEEEEEEeec
Q 015802 11 LFLGFDSSTQSLKATVLDS-NLNIVASEQLQF 41 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~-~G~~v~~~~~~~ 41 (400)
.+|+||..|..+-+++++. +++++.+.....
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~ 33 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKL 33 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEec
Confidence 5799999999999888886 677777765554
No 155
>PRK14878 UGMP family protein; Provisional
Probab=25.85 E-value=1.2e+02 Score=29.79 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=40.3
Q ss_pred EEEEecCcceEEEEEcCCCCEEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHhhcCCCCCEe
Q 015802 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVT 92 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~ 92 (400)
||||--+.-+-++++| +++++......+.. +. |+. -|+ ....+|.+.+...+.+++++.- +++++|.
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~~~--~~----gg~--~p~--~~~~~h~~~l~~~i~~~l~~a~--~~~~did 67 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTYVP--EK----GGI--HPR--EAAQHHAEVAPELLRKALEKAG--ISIEDID 67 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEeccc--Cc----CCc--Ccc--HHHHHHHHHHHHHHHHHHHHcC--CCHHHCC
Confidence 5888888888888987 45577666554321 11 111 121 0112233334444444444321 5678899
Q ss_pred EEEeec
Q 015802 93 AVSGSG 98 (400)
Q Consensus 93 aIgis~ 98 (400)
+|+++.
T Consensus 68 ~Iavt~ 73 (323)
T PRK14878 68 AVAVSQ 73 (323)
T ss_pred EEEEec
Confidence 999996
No 156
>PF13290 CHB_HEX_C_1: Chitobiase/beta-hexosaminidase C-terminal domain
Probab=25.09 E-value=66 Score=23.82 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.6
Q ss_pred EEEEecCcceEEEEEcCCCCE
Q 015802 13 LGFDSSTQSLKATVLDSNLNI 33 (400)
Q Consensus 13 lgIDiGttsiKa~l~d~~G~~ 33 (400)
|-|+ |++.+|+.++|.+|+.
T Consensus 43 i~i~-~~ttVka~a~~~~g~~ 62 (67)
T PF13290_consen 43 ITIT-GTTTVKARAFDPDGNS 62 (67)
T ss_pred EEec-CCEEEEEEEEcCCCcc
Confidence 4556 9999999999998764
No 157
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=23.28 E-value=81 Score=25.86 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.8
Q ss_pred cCcceEEEEEcCCCCEEEEEEeec
Q 015802 18 STQSLKATVLDSNLNIVASEQLQF 41 (400)
Q Consensus 18 GttsiKa~l~d~~G~~v~~~~~~~ 41 (400)
.-|++||-|||.+|++++.+..-+
T Consensus 15 ~Pt~~RARlyd~dG~Ll~DSr~l~ 38 (112)
T PF13756_consen 15 SPTRTRARLYDPDGNLLADSRVLY 38 (112)
T ss_pred CCCCceEEEECCCCCEEeeccccc
Confidence 346999999999999999887776
No 158
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=23.01 E-value=93 Score=26.42 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.4
Q ss_pred eEEEEEecCcceEEEEEcCCCCE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNI 33 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~ 33 (400)
.+||||+|+..+=.++-|..+.+
T Consensus 2 riL~lD~G~kriGiAvsd~~~~~ 24 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGII 24 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTSS
T ss_pred eEEEEEeCCCeEEEEEecCCCCe
Confidence 48999999999999999988765
No 159
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=22.95 E-value=2.9e+02 Score=23.79 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.1
Q ss_pred EEEEEecCcceEEEEEcCCCC
Q 015802 12 FLGFDSSTQSLKATVLDSNLN 32 (400)
Q Consensus 12 ~lgIDiGttsiKa~l~d~~G~ 32 (400)
+||||-|++++=-++++.+++
T Consensus 2 ILGIDPGl~~~G~av~~~~~~ 22 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGR 22 (154)
T ss_pred EEEEccCcCceEEEEEEeeCC
Confidence 799999999999999986543
No 160
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=22.76 E-value=98 Score=33.24 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=20.2
Q ss_pred CceEEEEEecCcceEEEEEcCCCCEE
Q 015802 9 DSLFLGFDSSTQSLKATVLDSNLNIV 34 (400)
Q Consensus 9 ~~~~lgIDiGttsiKa~l~d~~G~~v 34 (400)
..++|-||+|-|.+|-++++. ++++
T Consensus 337 ~~~~LliD~GNTriKwa~~~~-~~~~ 361 (592)
T PRK13325 337 SERFLLLDGGNSRLKWAWVEN-GTFA 361 (592)
T ss_pred CceEEEEEcCcCceeEEEEcC-Ccee
Confidence 357888999999999999984 4454
No 161
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=22.41 E-value=1.1e+02 Score=25.37 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHhhc--CCCCCEeEEEeecc
Q 015802 69 LMWIEALDLMLQKLSKS--LDLSKVTAVSGSGQ 99 (400)
Q Consensus 69 ~~~~~~~~~~~~~l~~~--~~~~~I~aIgis~~ 99 (400)
++++++..++++++.+. +++++|.+|-||..
T Consensus 16 e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T 48 (117)
T cd02185 16 EEILEATRELLEEIIERNNIKPEDIISVIFTVT 48 (117)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 48999999999998874 88899999999975
No 162
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=22.22 E-value=84 Score=25.28 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=26.6
Q ss_pred HHHHHHcCCCCCCeEEecCCchHHhhhcccCCCCCc
Q 015802 262 PYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGD 297 (400)
Q Consensus 262 ~~~a~~lGL~~g~pV~~g~~D~~aa~~g~g~~~~g~ 297 (400)
+++|+.+| ++++.|+.|+.|.-+|-+++--+.-|+
T Consensus 10 k~~aek~g-~eNvvV~lG~aeaEaaglaAETVt~GD 44 (107)
T PRK14717 10 KELAEKYG-AENIVVILGAAEAEAAGLAAETVTNGD 44 (107)
T ss_pred HHHHHhcC-CccEEEEecCcchhhccceeeeeccCC
Confidence 46788888 689999999999998887654433333
No 163
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.91 E-value=1.1e+02 Score=29.26 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=22.9
Q ss_pred eEEEEEecCcceEEEEEcCCCCEEEEEE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIVASEQ 38 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v~~~~ 38 (400)
=.|.||+|+..+-++++|++ +|.+.--
T Consensus 228 palvVd~GngHttaalvded-RI~gv~E 254 (342)
T COG4012 228 PALVVDYGNGHTTAALVDED-RIVGVYE 254 (342)
T ss_pred ceEEEEccCCceEEEEecCC-eEEEEee
Confidence 36889999999999999999 8877643
No 164
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=21.77 E-value=1.2e+02 Score=25.26 Aligned_cols=31 Identities=19% Similarity=0.051 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHhhc--CCCCCEeEEEeecc
Q 015802 69 LMWIEALDLMLQKLSKS--LDLSKVTAVSGSGQ 99 (400)
Q Consensus 69 ~~~~~~~~~~~~~l~~~--~~~~~I~aIgis~~ 99 (400)
++++++..++++++.+. +++++|.+|-||..
T Consensus 16 e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T 48 (117)
T TIGR01796 16 EEIGEAVAELLTELMERNELTPEDLISVIFTVT 48 (117)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEec
Confidence 48999999999998874 88899999999975
No 165
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=21.15 E-value=1.1e+02 Score=30.73 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=46.4
Q ss_pred ceEEEEEecCc--ceEEEEEcCCCC-----EEEEEEeeccCCCCCCCCCCceeeCCC--CCCCcCCChhHHHHHHHHHHH
Q 015802 10 SLFLGFDSSTQ--SLKATVLDSNLN-----IVASEQLQFDSELPHYKTKDGVYRDPS--NNGRIVSPTLMWIEALDLMLQ 80 (400)
Q Consensus 10 ~~~lgIDiGtt--siKa~l~d~~G~-----~v~~~~~~~~~~~~~~~~~g~~e~d~~--~~~~~~~~~~~~~~~~~~~~~ 80 (400)
.++||+=-||| .|-+++++.+|+ ++...+++|+.....- -..-.++. +..+..+=-.++-+.+.++++
T Consensus 2 ~~~iGlMSGTSlDGiD~alv~~~g~~~~~~~~~~~~~py~~~lr~~---l~~~~~~~~~~~~~l~~l~~~lg~~~a~av~ 78 (365)
T PRK09585 2 MRYIGLMSGTSLDGVDAALVEIDGEGTKVELLASATVPYPDELRAA---LLALLQGGADELERLAELDTALGRLFAEAVN 78 (365)
T ss_pred CeEEEeccccChhhhhEEEEEEeCCCcceEEeeeeEeeCCHHHHHH---HHHHhCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 35789999998 588888887653 4555566665221100 00001111 000000000012233455555
Q ss_pred HHhhc--CCCCCEeEEEeecccceee
Q 015802 81 KLSKS--LDLSKVTAVSGSGQQHGSV 104 (400)
Q Consensus 81 ~l~~~--~~~~~I~aIgis~~~~~~v 104 (400)
++++. +++++|..||..+| ++.
T Consensus 79 ~~~~~~~l~~~~id~IgsHGQ--Tv~ 102 (365)
T PRK09585 79 ALLAEAGLSPEDIDAIGSHGQ--TVR 102 (365)
T ss_pred HHHHHcCCCccCccEEEeCCc--ccc
Confidence 65543 67789999999988 553
No 166
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=20.72 E-value=2e+02 Score=30.04 Aligned_cols=68 Identities=12% Similarity=0.022 Sum_probs=45.8
Q ss_pred CCCceEEEEEecCcceEEEEEc---CCCC-EEEEEEeeccCCCCCCCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHH
Q 015802 7 PKDSLFLGFDSSTQSLKATVLD---SNLN-IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKL 82 (400)
Q Consensus 7 ~~~~~~lgIDiGttsiKa~l~d---~~G~-~v~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l 82 (400)
++-+|=+.||.|+|..|.-||. ++|+ +.....+.+......||-. -...+|+ ..-..+..+++.+
T Consensus 6 ~~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiS-sfa~nP~----------~a~~~l~pLlefA 74 (501)
T KOG1386|consen 6 PNLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGIS-SFADNPE----------GASVYLTPLLEFA 74 (501)
T ss_pred CcceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChh-hhccChh----------hhHHHHHHHHHHH
Confidence 3567999999999999999998 4677 4655555555555555411 1234555 6667777777766
Q ss_pred hhc
Q 015802 83 SKS 85 (400)
Q Consensus 83 ~~~ 85 (400)
.++
T Consensus 75 ~~~ 77 (501)
T KOG1386|consen 75 KEH 77 (501)
T ss_pred Hhh
Confidence 554
No 167
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=20.67 E-value=1.2e+02 Score=26.15 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.5
Q ss_pred ceEEEEEecCcceEEEEEcCCC
Q 015802 10 SLFLGFDSSTQSLKATVLDSNL 31 (400)
Q Consensus 10 ~~~lgIDiGttsiKa~l~d~~G 31 (400)
..+||+|+||-+|=+++-|..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4689999999999999988876
No 168
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=20.30 E-value=89 Score=30.16 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=16.6
Q ss_pred eEEEEEecCcceEEEEEcCCCCEE
Q 015802 11 LFLGFDSSTQSLKATVLDSNLNIV 34 (400)
Q Consensus 11 ~~lgIDiGttsiKa~l~d~~G~~v 34 (400)
=.|.+|+|+|++..+++. +|+..
T Consensus 78 ~~i~vDmGGTTtDi~~i~-~G~p~ 100 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK-DGRPE 100 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE-TTEE-
T ss_pred CEEEEeCCCCEEEEEEEE-CCeee
Confidence 478899999999999984 77654
No 169
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=20.14 E-value=77 Score=25.01 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=30.0
Q ss_pred CCccccCCChHH----HHHHHHHHhCChHHHHHHhCCCCCCCChHHHHHHHhhcCchhHHhccc
Q 015802 135 ESPVWMDSSTTA----QCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTER 194 (400)
Q Consensus 135 ~~i~w~D~R~~~----~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~ 194 (400)
.++.|.|.|+.. .++.+.+.-.+ ++ .+ ..+.-|-||+.|.|+.-+..+.
T Consensus 31 EA~~wY~qR~~~tKD~~~r~Imehnrd-eE-~e---------Ha~mlLEwlrR~~p~wd~eL~e 83 (103)
T COG3461 31 EAMMWYDQRADATKDEDLRAIMEHNRD-EE-KE---------HAAMLLEWLRRHDPAWDAELHE 83 (103)
T ss_pred HHHHHHHHHhhccccHhHHHHHHHccc-HH-HH---------HHHHHHHHHHHcCchHHHHHHH
Confidence 468999999763 34555444211 22 11 2466789999999976554443
Done!