BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015803
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin
pdb|1OXW|B Chain B, The Crystal Structure Of Semet Patatin
pdb|1OXW|C Chain C, The Crystal Structure Of Semet Patatin
Length = 373
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/385 (38%), Positives = 218/385 (56%), Gaps = 47/385 (12%)
Query: 27 GKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDG-PKARIADYFDIVSGTSTGGLIATM 85
G+ + VLSIDGGG+RGIIP TIL FLE QLQ+ D AR+ADYFD++ GTSTGGL+
Sbjct: 13 GEXVTVLSIDGGGIRGIIPATILEFLEGQLQEXDNNADARLADYFDVIGGTSTGGLLTAX 72
Query: 86 LTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRT 145
++ P+++ RP AAK+I FYF+H P+IF +P + + P YDGKY+
Sbjct: 73 ISTPNENNRPFAAAKEIVPFYFEHGPQIF-------------NPSGQILGPKYDGKYLXQ 119
Query: 146 LTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPT 205
+ LGE + LT ++I +FD+K +PVIF+ ++ +A+ D+ T+AAPT
Sbjct: 120 VLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKXYDISYSTAAAPT 179
Query: 206 YLPAHCFVTKDPITGDTCCFDLIDGGVA-ANDP-------------HNAEFDDIKPIDSR 251
Y P H FVT + GD F+L+DG VA DP + F I+ ++ +
Sbjct: 180 YFPPHYFVT-NTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYK 238
Query: 252 QMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSD-MVDFHVSA 310
+ L+LSLGTG E YTA++ + W + W ++ DA+S D+++S
Sbjct: 239 KXLLLSLGTGTTSEFDKTYTAKEAATWTAVHWXL------VIQKXTDAASSYXTDYYLST 292
Query: 311 FFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFR 370
FQ+ K NYLR+Q++ LT + + D+ +E N + L ++G LLKKPVS + +T
Sbjct: 293 AFQALDSKNNYLRVQENALTGTTTEXDDASEANXELLVQVGENLLKKPVSEDNPET---- 348
Query: 371 KSEGEGNNDKALVRFAKQLYGQRKL 395
++AL RFAK L ++KL
Sbjct: 349 -------YEEALKRFAKLLSDRKKL 366
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 109 HCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTF 168
H +FP ++ RS + R+W+ P Y ++ LT + +G++ + T
Sbjct: 210 HGVSMFPNTLHEDQVRSDAA--REWLLPNYQRPNLQVLTGQYVGKVLLSQNGT------- 260
Query: 169 DVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYL 207
R V F T+ G H + + G++ +PT L
Sbjct: 261 -TPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL 298
>pdb|1ZL5|A Chain A, Crystal Structure Of Glu335gln Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
pdb|1ZL5|B Chain B, Crystal Structure Of Glu335gln Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
Length = 420
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 153 EITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCF 212
EI + ++++P + +P +F TN I N ++ G+ A T+ P + F
Sbjct: 132 EIKFSNGSQDILLPNVIIMGAEPDLFETNSSNISLRNNYMPSNHGFGSIAIVTFSPEYSF 191
Query: 213 VTKD 216
D
Sbjct: 192 RFND 195
>pdb|1T3A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin Type
E Catalytic Domain
pdb|1T3A|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin Type
E Catalytic Domain
Length = 421
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 153 EITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCF 212
EI + ++++P + +P +F TN I N ++ G+ A T+ P + F
Sbjct: 132 EIKFSNGSQDILLPNVIIMGAEPDLFETNSSNISLRNNYMPSNHGFGSIAIVTFSPEYSF 191
Query: 213 VTKD 216
D
Sbjct: 192 RFND 195
>pdb|1T3C|A Chain A, Clostridium Botulinum Type E Catalytic Domain E212q Mutant
pdb|1T3C|B Chain B, Clostridium Botulinum Type E Catalytic Domain E212q Mutant
Length = 421
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 153 EITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCF 212
EI + ++++P + +P +F TN I N ++ G+ A T+ P + F
Sbjct: 132 EIKFSNGSQDILLPNVIIMGAEPDLFETNSSNISLRNNYMPSNHGFGSIAIVTFSPEYSF 191
Query: 213 VTKD 216
D
Sbjct: 192 RFND 195
>pdb|3D3X|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype E
Catalytic Domain In Complex With Snap-25 Substrate
Peptide
pdb|3D3X|B Chain B, Crystal Structure Of Botulinum Neurotoxin Serotype E
Catalytic Domain In Complex With Snap-25 Substrate
Peptide
Length = 427
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 153 EITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCF 212
EI + ++++P + +P +F TN I N ++ G+ A T+ P + F
Sbjct: 132 EIKFSNGSQDILLPNVIIMGAEPDLFETNSSNISLRNNYMPSNHGFGSIAIVTFSPEYSF 191
Query: 213 VTKD 216
D
Sbjct: 192 RFND 195
>pdb|1ZN3|A Chain A, Crystal Structure Of Glu335ala Mutant Of Clostridium
Botulinum Neurotoxin Type E
pdb|1ZN3|B Chain B, Crystal Structure Of Glu335ala Mutant Of Clostridium
Botulinum Neurotoxin Type E
Length = 420
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 153 EITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCF 212
EI + ++++P + +P +F TN I N ++ G+ A T+ P + F
Sbjct: 132 EIKFSNGSQDILLPNVIIMGAEPDLFETNSSNISLRNNYMPSNHGFGSIAIVTFSPEYSF 191
Query: 213 VTKD 216
D
Sbjct: 192 RFND 195
>pdb|1ZL6|A Chain A, Crystal Structure Of Tyr350ala Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
pdb|1ZL6|B Chain B, Crystal Structure Of Tyr350ala Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
Length = 420
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 153 EITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCF 212
EI + ++++P + +P +F TN I N ++ G+ A T+ P + F
Sbjct: 132 EIKFSNGSQDILLPNVIIMGAEPDLFETNSSNISLRNNYMPSNHGFGSIAIVTFSPEYSF 191
Query: 213 VTKD 216
D
Sbjct: 192 RFND 195
>pdb|1ZKW|A Chain A, Crystal Structure Of Arg347ala Mutant Of Botulinum
Neurotoxin E Catalytic Domain
pdb|1ZKW|B Chain B, Crystal Structure Of Arg347ala Mutant Of Botulinum
Neurotoxin E Catalytic Domain
Length = 420
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 153 EITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCF 212
EI + ++++P + +P +F TN I N ++ G+ A T+ P + F
Sbjct: 132 EIKFSNGSQDILLPNVIIMGAEPDLFETNSSNISLRNNYMPSNHGFGSIAIVTFSPEYSF 191
Query: 213 VTKD 216
D
Sbjct: 192 RFND 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,080,295
Number of Sequences: 62578
Number of extensions: 520511
Number of successful extensions: 959
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 20
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)