BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015804
         (400 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
          Length = 553

 Score = 34.7 bits (78), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 247 RIILVGSGADEQCAGYGRHRTKYKHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCADNGKE 306
           +++L G G+DE   GY      +K  +   L EE    +  +   +  R ++  +  G E
Sbjct: 342 KMVLSGEGSDEVFGGY---LYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVE 398

Query: 307 ARFPFLDEDVIRTLLDIPLWEIANLDQPSGTG--DKKILRE 345
           AR PFLD    +  LD+ +  I   D+  G G  +K ILRE
Sbjct: 399 ARVPFLD----KKFLDVAM-RINPQDKMCGNGKMEKHILRE 434


>pdb|1B82|A Chain A, Pristine Recomb. Lignin Peroxidase H8
 pdb|1B82|B Chain B, Pristine Recomb. Lignin Peroxidase H8
          Length = 351

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 49  THLGEH-NIHSACSDIISESGPIPASVPCSM 78
           T LG+  N  + CSD+I +S PIP ++P S 
Sbjct: 280 TQLGQDPNAMTDCSDVIPQSKPIPGNLPFSF 310


>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
          Length = 314

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 266 RTKYKHGSWVGLDEEMKLDMQRI-WKRNLGRDDRCCADNGKEARFPFLDEDVIRTLLDIP 324
           + KY +GS   LD++  L++ R+  K  L R  R      +E   P + E VI  ++++ 
Sbjct: 99  KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAE-VIYPIMEVN 157

Query: 325 LWEIANLDQPSGTGDKKILREVAKMLGLYEAATLPKRAI 363
            W  + +D   G  +++ +  +A+ L       LPK+ +
Sbjct: 158 GWHYSGVDVAVGGMEQRKIHMLAREL-------LPKKVV 189


>pdb|1B85|A Chain A, Lignin Peroxidase
 pdb|1B85|B Chain B, Lignin Peroxidase
          Length = 351

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 49  THLGEH-NIHSACSDIISESGPIPASVPCSM 78
           T LG+  N  + CSD+I +S PIP ++P S 
Sbjct: 280 TQLGQDPNAMTDCSDVIPQSKPIPGNLPFSF 310


>pdb|1B80|A Chain A, Rec. Lignin Peroxidase H8 Oxidatively Processed
 pdb|1B80|B Chain B, Rec. Lignin Peroxidase H8 Oxidatively Processed
          Length = 351

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 49  THLGEH-NIHSACSDIISESGPIPASVPCSM 78
           T LG+  N  + CSD+I +S PIP ++P S 
Sbjct: 280 TQLGQDPNAMTDCSDVIPQSKPIPGNLPFSF 310


>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
 pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
          Length = 697

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDR--ISAKAGLKEL 168
           V VL SGG+DS +  ALLN  L+   +  ++ V  D  F   R   S +  LK+L
Sbjct: 243 VLVLLSGGVDSTVCTALLNRALN---QEQVIAVHIDNGFMRKRESQSVEEALKKL 294


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,815,421
Number of Sequences: 62578
Number of extensions: 494053
Number of successful extensions: 1138
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 12
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)