Query 015804
Match_columns 400
No_of_seqs 175 out of 1428
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:43:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03104 trio_amidotrans aspa 100.0 3E-56 6.6E-61 473.2 28.9 306 9-367 147-525 (589)
2 TIGR01536 asn_synth_AEB aspara 100.0 8.3E-55 1.8E-59 451.3 27.2 302 9-363 145-467 (467)
3 PRK09431 asnB asparagine synth 100.0 3.2E-54 7E-59 453.6 26.4 289 10-369 147-459 (554)
4 PTZ00077 asparagine synthetase 100.0 2.5E-52 5.3E-57 441.4 26.3 285 15-368 160-472 (586)
5 TIGR03108 eps_aminotran_1 exos 100.0 6.6E-52 1.4E-56 443.9 28.7 304 10-367 148-565 (628)
6 PLN02549 asparagine synthase ( 100.0 4.1E-52 8.8E-57 438.7 25.6 285 15-368 152-458 (578)
7 KOG0571 Asparagine synthase (g 100.0 3.2E-49 7E-54 387.8 17.8 284 14-368 151-456 (543)
8 COG0367 AsnB Asparagine syntha 100.0 1.1E-43 2.3E-48 372.9 20.4 306 11-379 148-465 (542)
9 KOG0573 Asparagine synthase [A 100.0 6.9E-43 1.5E-47 345.2 16.0 290 77-382 214-513 (520)
10 cd01991 Asn_Synthase_B_C The C 100.0 3.6E-42 7.9E-47 330.7 18.4 232 84-366 1-269 (269)
11 PF00733 Asn_synthase: Asparag 100.0 6.3E-39 1.4E-43 303.5 15.9 228 82-360 1-255 (255)
12 cd01996 Alpha_ANH_like_III Thi 99.2 7.8E-11 1.7E-15 104.3 10.1 121 115-267 3-124 (154)
13 TIGR03573 WbuX N-acetyl sugar 99.0 2.5E-09 5.4E-14 107.4 12.8 119 114-264 60-179 (343)
14 PRK00876 nadE NAD synthetase; 98.7 8.9E-08 1.9E-12 95.2 9.9 77 74-169 10-88 (326)
15 cd00712 AsnB Glutamine amidotr 98.6 3.8E-08 8.2E-13 92.5 5.7 60 9-68 145-212 (220)
16 cd00553 NAD_synthase NAD+ synt 98.6 2.9E-07 6.2E-12 88.3 9.5 76 76-169 3-78 (248)
17 TIGR00552 nadE NAD+ synthetase 98.5 5.6E-07 1.2E-11 86.4 11.2 73 76-169 2-77 (250)
18 TIGR00268 conserved hypothetic 98.5 6.7E-07 1.5E-11 86.0 11.2 116 112-264 11-126 (252)
19 cd01990 Alpha_ANH_like_I This 98.5 8.8E-07 1.9E-11 81.9 10.1 113 116-263 1-113 (202)
20 PRK13980 NAD synthetase; Provi 98.5 2.3E-06 4.9E-11 83.0 13.1 77 75-169 9-85 (265)
21 cd01909 betaLS_CarA_N Glutamin 98.3 4.5E-07 9.7E-12 84.2 4.0 53 15-68 133-185 (199)
22 COG1606 ATP-utilizing enzymes 98.3 3.3E-06 7.1E-11 80.2 9.5 116 115-266 19-134 (269)
23 PF06508 QueC: Queuosine biosy 98.3 9.4E-06 2E-10 76.1 12.3 164 117-326 3-176 (209)
24 COG0603 Predicted PP-loop supe 98.2 3.8E-06 8.3E-11 78.7 7.3 51 117-170 6-56 (222)
25 PRK14561 hypothetical protein; 98.1 1.5E-05 3.2E-10 73.9 9.2 49 115-169 2-50 (194)
26 cd01993 Alpha_ANH_like_II This 98.1 2.5E-05 5.5E-10 70.6 9.7 54 116-169 2-60 (185)
27 TIGR00364 exsB protein. This p 98.0 2.3E-05 5E-10 72.6 7.5 50 117-169 2-51 (201)
28 PRK11106 queuosine biosynthesi 97.9 3.5E-05 7.5E-10 73.3 8.2 52 115-169 3-54 (231)
29 PRK04527 argininosuccinate syn 97.9 7.9E-05 1.7E-09 76.0 10.8 53 114-169 3-55 (400)
30 cd01712 ThiI ThiI is required 97.8 0.00025 5.5E-09 64.2 11.2 34 116-152 2-35 (177)
31 PRK00143 mnmA tRNA-specific 2- 97.7 0.00016 3.5E-09 72.8 10.2 52 115-169 2-63 (346)
32 cd01998 tRNA_Me_trans tRNA met 97.7 0.00033 7.2E-09 70.7 10.8 51 116-169 2-60 (349)
33 PTZ00323 NAD+ synthase; Provis 97.6 0.0006 1.3E-08 67.1 12.0 57 113-169 46-105 (294)
34 PRK00509 argininosuccinate syn 97.6 0.0002 4.4E-09 73.2 8.9 51 115-169 4-54 (399)
35 PRK13981 NAD synthetase; Provi 97.6 0.00033 7.2E-09 74.6 10.7 76 80-169 260-335 (540)
36 TIGR00884 guaA_Cterm GMP synth 97.6 0.0013 2.7E-08 65.5 13.5 56 112-169 15-71 (311)
37 PRK14665 mnmA tRNA-specific 2- 97.6 0.00041 9E-09 70.2 9.9 55 112-169 4-60 (360)
38 PRK08349 hypothetical protein; 97.5 0.00097 2.1E-08 61.7 11.3 50 115-170 2-51 (198)
39 cd01986 Alpha_ANH_like Adenine 97.5 0.0006 1.3E-08 56.2 8.4 33 116-151 1-33 (103)
40 PF02568 ThiI: Thiamine biosyn 97.5 0.00084 1.8E-08 62.4 10.1 116 113-258 3-121 (197)
41 PLN00200 argininosuccinate syn 97.5 0.00035 7.6E-09 71.6 8.0 53 114-169 6-58 (404)
42 PRK01565 thiamine biosynthesis 97.4 0.00074 1.6E-08 69.2 10.2 118 112-259 175-293 (394)
43 cd01995 ExsB ExsB is a transcr 97.4 0.00029 6.2E-09 63.2 6.3 51 116-169 2-52 (169)
44 PF02540 NAD_synthase: NAD syn 97.4 0.00063 1.4E-08 65.2 8.6 55 114-169 19-73 (242)
45 TIGR00032 argG argininosuccina 97.4 0.00077 1.7E-08 69.0 9.2 50 116-169 2-51 (394)
46 TIGR02432 lysidine_TilS_N tRNA 97.4 0.00088 1.9E-08 61.1 8.7 54 116-169 2-58 (189)
47 cd01999 Argininosuccinate_Synt 97.4 0.00088 1.9E-08 68.4 9.4 51 116-169 1-51 (385)
48 PRK00919 GMP synthase subunit 97.3 0.00088 1.9E-08 66.4 8.5 54 112-167 20-73 (307)
49 PRK10696 tRNA 2-thiocytidine b 97.3 0.004 8.6E-08 60.1 12.8 76 79-169 8-87 (258)
50 TIGR00342 thiazole biosynthesi 97.3 0.0027 5.8E-08 64.7 12.0 67 112-183 171-238 (371)
51 PRK13820 argininosuccinate syn 97.3 0.0014 3E-08 67.1 9.8 52 115-169 4-56 (394)
52 PRK08384 thiamine biosynthesis 97.2 0.0021 4.5E-08 65.6 10.6 66 112-183 179-244 (381)
53 PLN02347 GMP synthetase 97.2 0.0015 3.3E-08 69.4 9.4 57 111-169 227-284 (536)
54 cd01994 Alpha_ANH_like_IV This 97.2 0.0028 6E-08 58.7 9.9 51 116-169 2-58 (194)
55 PRK00768 nadE NAD synthetase; 97.2 0.005 1.1E-07 59.9 11.7 57 113-169 38-100 (268)
56 cd01997 GMP_synthase_C The C-t 97.1 0.0026 5.7E-08 62.7 9.9 52 116-169 2-53 (295)
57 COG0037 MesJ tRNA(Ile)-lysidin 97.1 0.0063 1.4E-07 59.4 12.0 56 113-169 21-78 (298)
58 COG0367 AsnB Asparagine syntha 97.1 0.00036 7.9E-09 74.3 3.4 78 281-367 403-480 (542)
59 cd01992 PP-ATPase N-terminal d 97.1 0.004 8.7E-08 56.3 9.7 54 116-169 2-58 (185)
60 PRK14664 tRNA-specific 2-thiou 97.0 0.0054 1.2E-07 62.2 10.8 52 112-169 4-55 (362)
61 TIGR00420 trmU tRNA (5-methyla 97.0 0.0045 9.7E-08 62.6 9.9 52 115-169 2-63 (352)
62 PRK05370 argininosuccinate syn 96.9 0.0071 1.5E-07 62.3 10.9 56 112-170 10-65 (447)
63 PF03054 tRNA_Me_trans: tRNA m 96.9 0.0024 5.2E-08 64.5 6.9 52 115-169 2-62 (356)
64 COG0482 TrmU Predicted tRNA(5- 96.8 0.0027 5.8E-08 63.8 6.8 54 113-169 3-63 (356)
65 PRK01269 tRNA s(4)U8 sulfurtra 96.8 0.0073 1.6E-07 63.6 10.4 114 114-258 178-293 (482)
66 cd01713 PAPS_reductase This do 96.7 0.0044 9.5E-08 54.5 7.0 55 115-169 1-55 (173)
67 PRK00074 guaA GMP synthase; Re 96.7 0.007 1.5E-07 64.2 9.7 56 112-169 214-270 (511)
68 PF00764 Arginosuc_synth: Argi 96.7 0.005 1.1E-07 62.8 7.9 50 118-170 2-51 (388)
69 COG2117 Predicted subunit of t 96.7 0.0044 9.6E-08 55.3 6.5 50 115-169 2-51 (198)
70 PF01171 ATP_bind_3: PP-loop f 96.5 0.014 3E-07 53.1 8.9 54 116-169 2-58 (182)
71 PRK05253 sulfate adenylyltrans 96.4 0.067 1.4E-06 53.0 13.6 54 115-169 29-84 (301)
72 COG1365 Predicted ATPase (PP-l 96.4 0.046 9.9E-07 51.1 11.4 50 82-136 34-83 (255)
73 PRK02628 nadE NAD synthetase; 96.3 0.033 7.3E-07 61.1 12.0 75 80-169 341-421 (679)
74 TIGR03679 arCOG00187 arCOG0018 96.3 0.021 4.6E-07 53.8 9.1 49 118-169 2-56 (218)
75 COG0137 ArgG Argininosuccinate 96.3 0.022 4.8E-07 57.5 9.6 55 113-170 4-58 (403)
76 PRK10660 tilS tRNA(Ile)-lysidi 96.0 0.03 6.4E-07 58.3 9.0 68 111-183 13-84 (436)
77 PLN02339 NAD+ synthase (glutam 95.7 0.053 1.1E-06 59.7 9.8 39 81-133 329-368 (700)
78 PRK08576 hypothetical protein; 95.2 0.07 1.5E-06 55.5 8.1 52 115-169 236-287 (438)
79 COG0171 NadE NAD synthase [Coe 94.9 0.15 3.2E-06 49.7 9.1 56 114-169 26-84 (268)
80 COG0519 GuaA GMP synthase, PP- 94.8 0.076 1.6E-06 51.6 6.7 36 112-149 20-55 (315)
81 COG0301 ThiI Thiamine biosynth 94.3 0.49 1.1E-05 48.3 11.5 31 115-148 177-207 (383)
82 PRK13795 hypothetical protein; 94.3 0.23 4.9E-06 54.2 9.7 53 113-169 243-296 (636)
83 KOG2805 tRNA (5-methylaminomet 94.2 0.13 2.8E-06 50.7 6.7 62 113-184 5-75 (377)
84 PRK08557 hypothetical protein; 93.7 0.28 6E-06 50.8 8.6 53 113-169 181-234 (417)
85 TIGR02039 CysD sulfate adenyly 93.6 1.1 2.5E-05 44.2 12.3 52 117-169 23-76 (294)
86 PRK13794 hypothetical protein; 93.4 0.41 8.9E-06 50.5 9.5 54 113-169 247-301 (479)
87 KOG1706 Argininosuccinate synt 93.3 0.25 5.5E-06 48.6 7.0 52 114-170 6-57 (412)
88 PRK02090 phosphoadenosine phos 93.2 0.37 8E-06 46.0 8.0 51 115-169 42-93 (241)
89 cd00715 GPATase_N Glutamine am 90.6 0.22 4.7E-06 47.8 3.2 41 10-68 181-222 (252)
90 PF01507 PAPS_reduct: Phosphoa 90.6 0.4 8.7E-06 42.4 4.7 50 116-169 2-52 (174)
91 cd01984 AANH_like Adenine nucl 89.1 0.47 1E-05 37.2 3.5 33 117-149 2-34 (86)
92 PRK12563 sulfate adenylyltrans 88.6 2.6 5.6E-05 42.0 9.0 53 116-169 40-94 (312)
93 TIGR00434 cysH phosophoadenyly 87.0 1.1 2.4E-05 41.6 5.2 52 114-169 14-66 (212)
94 COG3969 Predicted phosphoadeno 85.5 2.3 4.9E-05 42.7 6.6 43 112-154 26-70 (407)
95 TIGR00289 conserved hypothetic 84.1 4.4 9.6E-05 38.4 7.7 51 116-169 3-58 (222)
96 PRK06388 amidophosphoribosyltr 83.9 0.98 2.1E-05 47.6 3.5 82 10-122 199-302 (474)
97 PRK05793 amidophosphoribosyltr 83.5 1.1 2.4E-05 47.2 3.7 41 10-68 196-236 (469)
98 PRK09246 amidophosphoribosyltr 83.4 1 2.3E-05 47.7 3.5 35 16-68 201-235 (501)
99 KOG1622 GMP synthase [Nucleoti 83.2 5.9 0.00013 41.2 8.5 37 112-149 229-265 (552)
100 PRK07631 amidophosphoribosyltr 83.1 1.1 2.4E-05 47.2 3.5 68 10-95 191-280 (475)
101 PRK07349 amidophosphoribosyltr 82.2 2.8 6E-05 44.6 6.1 76 15-121 225-322 (500)
102 PRK00331 glucosamine--fructose 81.6 1.2 2.7E-05 48.1 3.3 40 10-68 181-220 (604)
103 PRK07847 amidophosphoribosyltr 81.6 1.4 2.9E-05 47.0 3.5 82 10-122 211-313 (510)
104 PRK08341 amidophosphoribosyltr 81.5 1.4 3.1E-05 46.0 3.6 81 10-123 182-283 (442)
105 TIGR01135 glmS glucosamine--fr 81.3 1.3 2.8E-05 47.9 3.4 40 10-68 180-219 (607)
106 TIGR03183 DNA_S_dndC putative 81.2 6.3 0.00014 41.3 8.2 25 112-136 12-36 (447)
107 TIGR02057 PAPS_reductase phosp 81.0 3 6.5E-05 39.5 5.3 54 113-169 25-79 (226)
108 PRK06781 amidophosphoribosyltr 80.9 1.5 3.3E-05 46.1 3.6 68 10-95 191-280 (471)
109 PRK06850 hypothetical protein; 79.7 11 0.00023 40.2 9.4 25 112-136 33-57 (507)
110 cd01910 Wali7 This domain is p 79.5 1.7 3.8E-05 41.2 3.1 35 15-68 160-194 (224)
111 PRK09123 amidophosphoribosyltr 79.2 2 4.2E-05 45.4 3.8 68 10-95 202-292 (479)
112 COG0175 CysH 3'-phosphoadenosi 79.0 11 0.00024 36.4 8.7 53 113-169 39-92 (261)
113 TIGR01134 purF amidophosphorib 78.2 2.1 4.6E-05 44.7 3.7 82 10-122 182-284 (442)
114 PRK07272 amidophosphoribosyltr 76.8 2.1 4.6E-05 45.2 3.1 41 10-68 192-233 (484)
115 PLN02440 amidophosphoribosyltr 73.7 3.4 7.3E-05 43.7 3.7 40 11-68 182-222 (479)
116 PTZ00295 glucosamine-fructose- 69.9 3.8 8.3E-05 44.8 3.2 40 10-68 211-250 (640)
117 PRK08525 amidophosphoribosyltr 61.2 8.3 0.00018 40.4 3.6 67 11-95 182-272 (445)
118 KOG2303 Predicted NAD synthase 57.7 5.5 0.00012 41.9 1.5 22 243-264 506-527 (706)
119 TIGR00290 MJ0570_dom MJ0570-re 43.3 1.2E+02 0.0027 28.7 8.1 51 116-169 3-58 (223)
120 PF08057 Ery_res_leader2: Eryt 39.3 10 0.00022 19.6 0.1 13 301-313 1-13 (14)
121 COG2102 Predicted ATPases of P 34.5 1.5E+02 0.0033 28.2 7.0 51 116-169 3-59 (223)
122 PF01902 ATP_bind_4: ATP-bindi 33.8 87 0.0019 29.6 5.4 21 116-136 3-23 (218)
123 PRK07188 nicotinate phosphorib 23.8 1.3E+02 0.0029 30.5 5.0 33 114-150 279-311 (352)
124 PLN02360 probable 6-phosphoglu 23.7 1.3E+02 0.0028 29.1 4.8 36 74-124 17-52 (268)
125 COG1856 Uncharacterized homolo 23.6 36 0.00079 32.5 0.9 15 114-128 55-69 (275)
No 1
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=3e-56 Score=473.24 Aligned_cols=306 Identities=20% Similarity=0.195 Sum_probs=241.1
Q ss_pred hhhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhh---------hhhcCceeeCCCcEEEEcCCCC-c---C----
Q 015804 9 CFVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHC---------ETHLGEHNIHSACSDIISESGP-I---P---- 71 (400)
Q Consensus 9 ~~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~---------T~~~gI~~l~pG~~l~i~~~~~-~---~---- 71 (400)
++....++.++||||+|+|++.+++++++|+.++.+||. |+|+||++|||||+++++.++. . |
T Consensus 147 Lyy~~~~~~~~faSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~ 226 (589)
T TIGR03104 147 LYYAEDAGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQRSYWSLD 226 (589)
T ss_pred eEEEEeCCEEEEEeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEEeeccCC
Confidence 345567889999999999999999999999999999984 9999999999999999985441 1 1
Q ss_pred -------CCCChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCcee
Q 015804 72 -------ASVPCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEID 144 (400)
Q Consensus 72 -------~~~~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~ 144 (400)
...+.++++++++++|.+||++|+ ++|+|||++||||||||+|++++++... .+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~L~~AV~~rl---------------~sd~pvg~~LSGGlDSs~Iaa~~~~~~~--~~l~ 289 (589)
T TIGR03104 227 AGRPADDAARTEADWQDAILEALRLAVKRRL---------------VADVPVGVLLSGGLDSSLIVGLLAEAGV--DGLR 289 (589)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHHHHh---------------hcCCceeEEecCCccHHHHHHHHHHhcC--CCce
Confidence 123567889999999999999999 6999999999999999999999987653 4699
Q ss_pred EEEeecCCC---CCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCcccchhHHHHHHHhcC
Q 015804 145 LLNVSFDGQ---FAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTYMDLNIGIALWLAAGG 221 (400)
Q Consensus 145 ~ftvgf~~~---~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~~d~~~~~~~~~~~~~ 221 (400)
|||++|++. .++|..+|+++|++++..| +.+.+ +.+++. +.+.++++..+.++..+..+++|++++
T Consensus 290 tftigf~~~~~~~~dE~~~A~~vA~~~g~~h-----~~i~~--~~~~~~---~~l~~~v~~~~~P~~~~~~~~~~~l~~- 358 (589)
T TIGR03104 290 TFSIGFEDVGGEKGDEFEYSDIIAERFHTRH-----HKIRI--PNHRVL---PALPEAVAAMSEPMVSHDCVAFYLLSE- 358 (589)
T ss_pred EEEEEecCCCCCCCChHHHHHHHHHHhCCcC-----eEEEc--CHHHHH---HHHHHHHHHhCCCCCCchHHHHHHHHH-
Confidence 999999764 3578999999999998543 33443 344554 344444544443433344678888875
Q ss_pred CCcccccccCCCchhhHHHHhhcCceEEEecccccccCCCCccchhhhcC-------------------------C----
Q 015804 222 DGWVYEGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGRHRTKYKH-------------------------G---- 272 (400)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~-------------------------~---- 272 (400)
. +++++||+|||+|||||||||++|...+.. .
T Consensus 359 ------------------~-a~~~~kV~LsGeGaDElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (589)
T TIGR03104 359 ------------------E-VSKHVKVVQSGQGADEVFGGYHWYPPLAAGAGDPVAAYRRAFFDRDHAEYLEMVGPRFHA 419 (589)
T ss_pred ------------------H-HhCCCeEEeecCchHhcccCcHhHHHHHhhccCchHHHHHHHhccCHHHHHHHhhhhhhc
Confidence 3 466899999999999999999877532100 0
Q ss_pred -Cc---------------chhHHHHHHHHHHHHh-hccCccchhhhcCCCcccCCCCCHHHHHHHhcCChhhhhccCCCC
Q 015804 273 -SW---------------VGLDEEMKLDMQRIWK-RNLGRDDRCCADNGKEARFPFLDEDVIRTLLDIPLWEIANLDQPS 335 (400)
Q Consensus 273 -~~---------------~~l~~~l~~dl~~~~~-~~L~r~Dr~sma~gvE~R~PFLD~~vve~a~~lP~~~k~k~~~~~ 335 (400)
.+ +.+++.++.|++.++. .+|.+.||++|++|||+|+||||++|||||++||+++|+ +
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa~svE~R~PFLD~~lve~a~~lP~~~k~--~--- 494 (589)
T TIGR03104 420 EDVSGEFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMAWGLEARVPFLDHELVELAARIPPELKL--A--- 494 (589)
T ss_pred cchhHHHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhhccccccCCccCHHHHHHHHhCCHHHhc--C---
Confidence 00 1233444556665555 457899999999999999999999999999999999964 4
Q ss_pred CCCchHHHHHHHHhcCchhhhcCCCCcccCCc
Q 015804 336 GTGDKKILREVAKMLGLYEAATLPKRAIQFGS 367 (400)
Q Consensus 336 g~~~K~iLR~a~~~~lP~~i~~R~K~g~q~gs 367 (400)
| .+|||||++++++||++|++|||+||..+-
T Consensus 495 ~-~~K~iLR~a~~~~lP~~i~~R~K~gf~~P~ 525 (589)
T TIGR03104 495 D-GGKGVLKEAARGVIPSEVIDRPKGYFPVPA 525 (589)
T ss_pred C-CcCHHHHHHHhhhCCHHHhCCCCCCCCCcH
Confidence 3 379999999999999999999999876553
No 2
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=8.3e-55 Score=451.33 Aligned_cols=302 Identities=20% Similarity=0.203 Sum_probs=245.2
Q ss_pred hhhcccCCEEEEeccchhHHccc-CCCCCCCHhHHHHHhh--------hhhcCceeeCCCcEEEEcCCCCc---------
Q 015804 9 CFVGELRKHEWTNAMLMELIKWE-RIFVEPTTENCGFSHC--------ETHLGEHNIHSACSDIISESGPI--------- 70 (400)
Q Consensus 9 ~~~~~~~~~~~FaSeikaLl~~~-~~~~~~d~~~l~~~l~--------T~~~gI~~l~pG~~l~i~~~~~~--------- 70 (400)
++.+..++.++||||+|+|++++ .++.++|.+++.+|+. |+|+||++|||||+++++.++..
T Consensus 145 Lyy~~~~~~~~faSe~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~ 224 (467)
T TIGR01536 145 LYYAYDGGQLYFASEIKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWERR 224 (467)
T ss_pred eEEEEECCEEEEEecHHHHHhccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecCCC
Confidence 34555678999999999999999 7899999999999997 99999999999999999865511
Q ss_pred -CCCCChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEee
Q 015804 71 -PASVPCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVS 149 (400)
Q Consensus 71 -~~~~~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvg 149 (400)
+...+.++++++++++|.+||++|+ ++++|||++||||+|||+|++++++... ..++.+||++
T Consensus 225 ~~~~~~~~~~~e~l~~~l~~aV~~r~---------------~~~~~vg~~LSGGlDSs~iaa~a~~~~~-~~~~~~~t~~ 288 (467)
T TIGR01536 225 DEHTDSEEDLVDELRSLLEDAVKRRL---------------VADVPVGVLLSGGLDSSLVAAIARREAP-RGPVHTFSIG 288 (467)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHh---------------ccCCceEEEecCChhHHHHHHHHHHhcC-CCCceEEEEe
Confidence 1234678899999999999999999 6999999999999999999999988753 1369999999
Q ss_pred cC-CCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCcccchhHHHHHHHhcCCCccccc
Q 015804 150 FD-GQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTYMDLNIGIALWLAAGGDGWVYEG 228 (400)
Q Consensus 150 f~-~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 228 (400)
|+ +...+|..+|+++|++++. +|+.+.+ +.+++. +.+.++++..+.++..+..+++|++++
T Consensus 289 ~~~~~~~~E~~~A~~vA~~lg~-----~~~~i~~--~~~~~~---~~~~~~v~~~~~p~~~~~~~~~~~l~~-------- 350 (467)
T TIGR01536 289 FEGSPDFDESPYARKVADHLGT-----EHHEVLF--SVEEGL---DALPEVIYHLEDPTTIRASIPLYLLSK-------- 350 (467)
T ss_pred cCCCCCCChHHHHHHHHHHhCC-----cCeEEEC--CHHHHH---HHHHHHHHhhCCCCCCchHHHHHHHHH--------
Confidence 98 3556788899999999974 3334443 334443 234445555555555555678888775
Q ss_pred ccCCCchhhHHHHhhcCceEEEecccccccCCCCccchhhhcCCCcchh-HHHHHHHHHHHHhhccCccchhhhcCCCcc
Q 015804 229 VTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGRHRTKYKHGSWVGL-DEEMKLDMQRIWKRNLGRDDRCCADNGKEA 307 (400)
Q Consensus 229 ~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~~~~~~l-~~~l~~dl~~~~~~~L~r~Dr~sma~gvE~ 307 (400)
.|++.|++|+|||+||||+|+||++|...+.. ..+ ++.+..|++.+++.+|.+.||++|+||||+
T Consensus 351 -----------~a~~~G~~vlltG~GaDElf~GY~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~dr~~ma~gvE~ 416 (467)
T TIGR01536 351 -----------LAREDGVKVVLSGEGADELFGGYLYFHEAPAA---EALREELQYLDLELYMPGLLRRKDRMSMAHSLEV 416 (467)
T ss_pred -----------HHHhcCCEEEEecCcchhcccCchhhhhcccc---HHHHHHHHHHHHHHhCcccchhHHHHHhhccccc
Confidence 45678899999999999999999998653211 122 344567788888888888899999999999
Q ss_pred cCCCCCHHHHHHHhcCChhhhhccCCCCCCCchHHHHHHHHhcCchhhhcCCCCcc
Q 015804 308 RFPFLDEDVIRTLLDIPLWEIANLDQPSGTGDKKILREVAKMLGLYEAATLPKRAI 363 (400)
Q Consensus 308 R~PFLD~~vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~~lP~~i~~R~K~g~ 363 (400)
|+||||++||++|++||.++|+ + +| .+|||||++|+++||++|++|||.||
T Consensus 417 R~PflD~~lv~~a~~lp~~~k~--~--~~-~~K~iLR~a~~~~lP~~i~~R~K~gf 467 (467)
T TIGR01536 417 RVPFLDHELVEYALSIPPEMKL--R--DG-KEKYLLREAFEGYLPEEILWRKKEGF 467 (467)
T ss_pred cCCcCCHHHHHHHHhCCHHHhc--C--CC-CcHHHHHHHHhhhCCHHHhcCCCCCC
Confidence 9999999999999999999964 4 23 58999999999999999999999886
No 3
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=3.2e-54 Score=453.63 Aligned_cols=289 Identities=19% Similarity=0.207 Sum_probs=226.8
Q ss_pred hhcccC-CEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc-C---------CCCChhH
Q 015804 10 FVGELR-KHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI-P---------ASVPCSM 78 (400)
Q Consensus 10 ~~~~~~-~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~-~---------~~~~~~e 78 (400)
+.+..+ +.++||||+|+|++. .++|++|||||+++++.+... | ...+.++
T Consensus 147 yy~~~~~~~~~faSE~kaL~~~-------------------~~~I~~lpPGh~l~~~~g~~~~y~~~~~~~~~~~~~~~~ 207 (554)
T PRK09431 147 YYGYDEHGNLYFASEMKALVPV-------------------CKTIKEFPPGHYYWSKDGEFVRYYQRDWFDYDAVKDNVT 207 (554)
T ss_pred EEEEeCCCeEEEecchHHHHHh-------------------cCCEEEECCCeEEEECCCcEEEecCCCcccccccCCHHH
Confidence 344555 789999999999863 368999999999998754211 1 1235678
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCC-----------CceeEEE
Q 015804 79 SVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPS-----------YEIDLLN 147 (400)
Q Consensus 79 ~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~-----------~~i~~ft 147 (400)
++++++++|.+||++|+ ++|+|||++||||||||+||+++++..... .+++|||
T Consensus 208 ~~~~lr~~L~~aV~~rl---------------~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfs 272 (554)
T PRK09431 208 DKNELRDALEAAVKKRL---------------MSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFA 272 (554)
T ss_pred HHHHHHHHHHHHHHHHh---------------cCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEE
Confidence 89999999999999999 699999999999999999999998875310 2699999
Q ss_pred eecCCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCC--cccchhHHHHHHHhcCCCcc
Q 015804 148 VSFDGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANT--YMDLNIGIALWLAAGGDGWV 225 (400)
Q Consensus 148 vgf~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~--~~d~~~~~~~~~~~~~~~~~ 225 (400)
++|++ ++|..+|+.+|+++++.| +.+.+ +.+++.. .+.++++..++ +.....++|+|++++
T Consensus 273 ig~~~--~~D~~~A~~vA~~lg~~h-----~~v~~--t~~e~~~---~l~~vi~~le~~dp~~~~~~~p~yll~~----- 335 (554)
T PRK09431 273 VGLEG--SPDLKAAREVADHLGTVH-----HEIHF--TVQEGLD---ALRDVIYHLETYDVTTIRASTPMYLMAR----- 335 (554)
T ss_pred EeCCC--CChHHHHHHHHHHhCCcc-----EEEEe--CHHHHHH---HHHHHHHHHhccCCccchhHHHHHHHHH-----
Confidence 99986 679999999999998643 33333 3455543 34445555544 222334788999885
Q ss_pred cccccCCCchhhHHHHhhcCceEEEecccccccCCCCccchhhhcCCCcchhHHHHHHHHHHHHhhccCccchhhhcCCC
Q 015804 226 YEGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGRHRTKYKHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCADNGK 305 (400)
Q Consensus 226 ~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~~~~~~l~~~l~~dl~~~~~~~L~r~Dr~sma~gv 305 (400)
.+++.|+||+|||+|||||||||.+|.... ....+.++...++..++..+|.|.||++|+||+
T Consensus 336 --------------~~~~~gvkvvLsGeGaDElFgGY~~~~~~p---~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~gl 398 (554)
T PRK09431 336 --------------KIKAMGIKMVLSGEGADELFGGYLYFHKAP---NAKEFHEETVRKLRALHMYDCLRANKAMMAWGV 398 (554)
T ss_pred --------------HHHHcCCEEEEecCchhhhhcCchhhhhCC---ChhhcCHHHHHHHHHHHHHhhhccchhhhhcCc
Confidence 335789999999999999999999886431 222344555556666666688999999999999
Q ss_pred cccCCCCCHHHHHHHhcCChhhhhccCCCCCCCchHHHHHHHHhcCchhhhcCCCCcccCCchh
Q 015804 306 EARFPFLDEDVIRTLLDIPLWEIANLDQPSGTGDKKILREVAKMLGLYEAATLPKRAIQFGSRI 369 (400)
Q Consensus 306 E~R~PFLD~~vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~~lP~~i~~R~K~g~q~gs~~ 369 (400)
|+|+||||++||++|++||+++|+ .. +|..+|||||+|++++||++|+||+|.||+.|.+.
T Consensus 399 E~RvPFLD~~lv~~a~~ip~~~K~--~~-~~~~~K~iLR~a~~~~LP~~I~~R~K~~f~~~~g~ 459 (554)
T PRK09431 399 EARVPFLDKEFLDVAMRINPEDKM--CG-NGKMEKHILREAFEGYLPESILWRQKEQFSDGVGY 459 (554)
T ss_pred eeecCcCCHHHHHHHHhCCHHHHh--cC-CCCCCHHHHHHHHhhhCCHHHhCCCCCCCCCCChh
Confidence 999999999999999999999975 31 13358999999999999999999999999999863
No 4
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=2.5e-52 Score=441.35 Aligned_cols=285 Identities=19% Similarity=0.221 Sum_probs=222.3
Q ss_pred CCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCC--c-C----------CCCChhHHHH
Q 015804 15 RKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGP--I-P----------ASVPCSMSVQ 81 (400)
Q Consensus 15 ~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~--~-~----------~~~~~~e~~~ 81 (400)
++.++||||+|+|++. +++|++|||||++.++.+.. . | ...+.+++++
T Consensus 160 ~g~~~faSE~kaL~~~-------------------~~~I~~lpPGh~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 220 (586)
T PTZ00077 160 DGSIWFSSELKALHDQ-------------------CVEVKQFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPTGEIDLE 220 (586)
T ss_pred CCeEEEEecHHHHHHh-------------------cCCEEEeCCCcEEEecCCcceeEEecCCcccccccCCCCHHHHHH
Confidence 5689999999999863 36899999999999985421 1 1 1234567899
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCC---------CCceeEEEeecCC
Q 015804 82 RVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDP---------SYEIDLLNVSFDG 152 (400)
Q Consensus 82 ~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~---------~~~i~~ftvgf~~ 152 (400)
+++++|.+||++|+ ++|+|||++||||||||+|++++++.... ..+++|||++|++
T Consensus 221 ~lr~~L~~AV~~rl---------------~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~~ 285 (586)
T PTZ00077 221 EIREALEAAVRKRL---------------MGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLEG 285 (586)
T ss_pred HHHHHHHHHHHHHh---------------cCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCCC
Confidence 99999999999999 69999999999999999999999886421 1369999999976
Q ss_pred CCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCc--ccchhHHHHHHHhcCCCccccccc
Q 015804 153 QFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTY--MDLNIGIALWLAAGGDGWVYEGVT 230 (400)
Q Consensus 153 ~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~ 230 (400)
.+|..+|+++|+++++.| +.+.+. .+++. +.+.+++++.+++ .....++|+|++++
T Consensus 286 --~~D~~~Ar~vA~~lg~~h-----~~i~~~--~~e~~---~~l~~~i~~le~~~~~~~~~~~p~yll~r---------- 343 (586)
T PTZ00077 286 --SPDLKAARKVAEYLGTEH-----HEFTFT--VEEGI---DALPDVIYHTETYDVTTIRASTPMYLLSR---------- 343 (586)
T ss_pred --CchHHHHHHHHHHhCCcC-----cEEEEC--HHHHH---HHHHHHHHHhcCCCCCCcchHHHHHHHHH----------
Confidence 689999999999998654 333332 34443 4556666666654 33345789999885
Q ss_pred CCCchhhHHHHhhcCceEEEecccccccCCCCccchhhhcCCCcchhHHHHHHHHHHHHhhccCccchhhhcCCCcccCC
Q 015804 231 SSNDVDQQRVKYISKSRIILVGSGADEQCAGYGRHRTKYKHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCADNGKEARFP 310 (400)
Q Consensus 231 ~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~~~~~~l~~~l~~dl~~~~~~~L~r~Dr~sma~gvE~R~P 310 (400)
.+++.|+||+|||+|||||||||.+|+... ....+.+++..+++.+...+|.|.||++|+||+|+|+|
T Consensus 344 ---------~a~~~gvkVvLsGeGaDElFgGY~~~~~ap---~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~RvP 411 (586)
T PTZ00077 344 ---------RIKALGIKMVLSGEGSDELFGGYLYFHKAP---NREEFHRELVRKLHDLHKYDCLRANKATMAWGIEARVP 411 (586)
T ss_pred ---------HHHhcCCeEEEecCchhhhccCcHhhhhCc---chHHHHHHHHHHHHHHhccCCchhhHHHHhcCceeecC
Confidence 346779999999999999999999886431 11234444433455555567899999999999999999
Q ss_pred CCCHHHHHHHhcCChhhhhccCCCCCCCchHHHHHHHHh----cCchhhhcCCCCcccCCch
Q 015804 311 FLDEDVIRTLLDIPLWEIANLDQPSGTGDKKILREVAKM----LGLYEAATLPKRAIQFGSR 368 (400)
Q Consensus 311 FLD~~vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~----~lP~~i~~R~K~g~q~gs~ 368 (400)
|||++||++|++||+++|++-. .++..+|||||+|+++ +||++|+||+|.||..|.+
T Consensus 412 FLD~~~v~~a~~ip~~~K~~~~-~~~~~~K~iLR~a~~~~~~~~LP~~I~~R~K~~F~~~~g 472 (586)
T PTZ00077 412 FLDKDFLEYVMNIDPKYKMCNA-FEGQMEKYILRKAFEGLEKPYLPDEILWRQKEQFSDGVG 472 (586)
T ss_pred cCCHHHHHHHHhCCHHHhcCCC-CCCCCCHHHHHHHHhccCcCcCCHHHhCCcccCCCCCCc
Confidence 9999999999999999975310 0123589999999998 8999999999999887765
No 5
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=6.6e-52 Score=443.87 Aligned_cols=304 Identities=18% Similarity=0.209 Sum_probs=231.0
Q ss_pred hhccc-CCEEEEeccchhHHcccCCCCCCCHhHHHHHhh--------hhhcCceeeCCCcEEEEcCCC--Cc---C----
Q 015804 10 FVGEL-RKHEWTNAMLMELIKWERIFVEPTTENCGFSHC--------ETHLGEHNIHSACSDIISESG--PI---P---- 71 (400)
Q Consensus 10 ~~~~~-~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~--------T~~~gI~~l~pG~~l~i~~~~--~~---~---- 71 (400)
+.+.. ++.++||||+++|++++++++++|++++.+||. |+|+||++|||||+++++.++ .. |
T Consensus 148 yy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~ 227 (628)
T TIGR03108 148 YYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRCYWDVS 227 (628)
T ss_pred EEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccccccCC
Confidence 33433 467899999999999999999999999999997 999999999999999998653 11 1
Q ss_pred ----CCCChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEE
Q 015804 72 ----ASVPCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLN 147 (400)
Q Consensus 72 ----~~~~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ft 147 (400)
...+.++++++++++|.+||+.|+ ++|+|||++||||||||+|++++++... .+++|||
T Consensus 228 ~~~~~~~~~~e~~e~l~~~l~~aV~~rl---------------~~d~~vg~~LSGGlDSs~Iaa~~~~~~~--~~i~t~s 290 (628)
T TIGR03108 228 FAPAAPLSEADALAELIERLREAVRSRM---------------VADVPLGAFLSGGVDSSAVVALMAGLSD--TPVNTCS 290 (628)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH---------------hcCCcceEeecCCccHHHHHHHHHHhcC--CCCcEEE
Confidence 123677899999999999999999 6999999999999999999999887642 4799999
Q ss_pred eecCCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccC-CCcccchhHHHHHHHhcCCCccc
Q 015804 148 VSFDGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPA-NTYMDLNIGIALWLAAGGDGWVY 226 (400)
Q Consensus 148 vgf~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~-~~~~d~~~~~~~~~~~~~~~~~~ 226 (400)
++|++...+|..+|+.+|++++.. |+.+.++ ..++ +.+.++++.. ++..+ +..+++|++++
T Consensus 291 ~~~~~~~~dE~~~A~~vA~~~g~~-----h~~~~~~--~~~~----~~~~~~~~~~~~P~~~-~~~~~~~~~~~------ 352 (628)
T TIGR03108 291 IAFDDPAFDESAYARQVAERYGTN-----HRVETVD--PDDF----SLVDRLAGLYDEPFAD-SSALPTYRVCE------ 352 (628)
T ss_pred EecCCCCCChHHHHHHHHHHhCCC-----CeEEecC--HHHH----HHHHHHHHHhCCCCCC-chHHHHHHHHH------
Confidence 999876678999999999999753 3444443 3332 2233333322 23343 33577887774
Q ss_pred ccccCCCchhhHHHHhhcCceEEEecccccccCCCCccchhhhc------------------------C-CC--------
Q 015804 227 EGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGRHRTKYK------------------------H-GS-------- 273 (400)
Q Consensus 227 ~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~------------------------~-~~-------- 273 (400)
. +++++||+|||+||||+|+||++|...+. + ..
T Consensus 353 -------------~-a~~~~kV~LsG~GgDElf~GY~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 418 (628)
T TIGR03108 353 -------------L-ARKRVTVALSGDGGDELFAGYRRYRWHMAEERVRGILPLGLRRPLFGTLGRLYPKADWAPRMLRA 418 (628)
T ss_pred -------------H-HHCCCCEEEeccchhhcccCcHHHHHHHHHHHHhhhCCHHHHHHHHHHHHhhCcccccchhhhhh
Confidence 3 46789999999999999999987642100 0 00
Q ss_pred --------------c-ch---h-----H----------------------------------HHHHHHHHHHHhh-ccCc
Q 015804 274 --------------W-VG---L-----D----------------------------------EEMKLDMQRIWKR-NLGR 295 (400)
Q Consensus 274 --------------~-~~---l-----~----------------------------------~~l~~dl~~~~~~-~L~r 295 (400)
+ .. + . +.+..|++.+++. +|.+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lL~~ 498 (628)
T TIGR03108 419 KTTFQALARDPLEGYFHSVSVLDNALRRQLFSPDFRRELQGYRAIEVLRRHAARAPTDDALSLAQYLDLKTYLPGDILTK 498 (628)
T ss_pred hhhHhhhhcchHHHHHHHhhhcChHHHHHHHHHHhhhhcccCCHHHHHHHHhccccCCCHHHHHHHHHHHHhCccccccc
Confidence 0 00 0 0 0000112222222 4678
Q ss_pred cchhhhcCCCcccCCCCCHHHHHHHhcCChhhhhccCCCCCCCchHHHHHHHHhcCchhhhcCCCCcccCCc
Q 015804 296 DDRCCADNGKEARFPFLDEDVIRTLLDIPLWEIANLDQPSGTGDKKILREVAKMLGLYEAATLPKRAIQFGS 367 (400)
Q Consensus 296 ~Dr~sma~gvE~R~PFLD~~vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~~lP~~i~~R~K~g~q~gs 367 (400)
.||++|++|||+|+||||++|||||++||.++|+ + +..+|||||+||+++||++|++|+|+||..+-
T Consensus 499 ~Dr~sMa~svE~R~PFLD~~lve~a~slP~~~k~--~---~~~~K~iLR~a~~~~LP~~I~~R~K~gF~~p~ 565 (628)
T TIGR03108 499 VDRASMAHGLEVRVPLLDHRLVEWAAGLPPDLKL--R---GGEGKYLLKKAMRPYLPDDVLYRPKMGFSVPL 565 (628)
T ss_pred cCccchhccccccCCCCCHHHHHHHHhCCHHHhc--C---CCCchHHHHHHHHhhCCHHHhCCCCCCCCCCH
Confidence 9999999999999999999999999999999964 4 33689999999999999999999999975553
No 6
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=4.1e-52 Score=438.74 Aligned_cols=285 Identities=19% Similarity=0.190 Sum_probs=224.0
Q ss_pred CCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc-C--------CCCChhHHHHHHHH
Q 015804 15 RKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI-P--------ASVPCSMSVQRVLN 85 (400)
Q Consensus 15 ~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~-~--------~~~~~~e~~~~l~~ 85 (400)
++.++||||+|+|++. +++|++|||||++.++.++.. + ...+.++..+++++
T Consensus 152 ~g~~~fASE~KaL~~~-------------------~~~I~~lpPGh~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lr~ 212 (578)
T PLN02549 152 DGSVWFASEMKALCDD-------------------CERFEEFPPGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLVLRE 212 (578)
T ss_pred CCeEEEEecHHHHHHH-------------------hCCEEEeCCCeEEEEcCCCEEEEEecccCccccCCchhHHHHHHH
Confidence 5689999999999863 368999999999999654321 1 11244567899999
Q ss_pred HHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCC-------CceeEEEeecCCCCCccH
Q 015804 86 ALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPS-------YEIDLLNVSFDGQFAPDR 158 (400)
Q Consensus 86 ~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~-------~~i~~ftvgf~~~~~~d~ 158 (400)
+|.+||++|+ .+|+|+|++||||||||+|++++++..... .++++||++|++ ++|.
T Consensus 213 ~L~~aV~~rl---------------~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~ 275 (578)
T PLN02549 213 AFEKAVIKRL---------------MTDVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCVGLEG--SPDL 275 (578)
T ss_pred HHHHHHHHHh---------------ccCCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEecCCCC--CCHH
Confidence 9999999999 699999999999999999999998864211 368999999976 6799
Q ss_pred HHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCcc--cchhHHHHHHHhcCCCcccccccCCCchh
Q 015804 159 ISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTYM--DLNIGIALWLAAGGDGWVYEGVTSSNDVD 236 (400)
Q Consensus 159 ~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (400)
.+|+++|+++++.| +.+.+. .+++. +.+.+++++.+++. ....++|+|++++
T Consensus 276 ~~Ar~vA~~lg~~h-----~ev~~~--~~e~~---~~l~~~i~~le~~dp~~~~~s~p~yll~r---------------- 329 (578)
T PLN02549 276 KAAREVADYLGTVH-----HEFHFT--VQEGI---DAIEDVIYHLETYDVTTIRASTPMFLMSR---------------- 329 (578)
T ss_pred HHHHHHHHHhCCCC-----eEEEEC--hHHHH---HHHHHHHHHhcCCCCccchhHHHHHHHHH----------------
Confidence 99999999998654 333333 34443 45666677666532 2333789999885
Q ss_pred hHHHHhhcCceEEEecccccccCCCCccchhhhcCCCcchhHHHHHHHHHHHHhhccCccchhhhcCCCcccCCCCCHHH
Q 015804 237 QQRVKYISKSRIILVGSGADEQCAGYGRHRTKYKHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCADNGKEARFPFLDEDV 316 (400)
Q Consensus 237 ~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~~~~~~l~~~l~~dl~~~~~~~L~r~Dr~sma~gvE~R~PFLD~~v 316 (400)
.+++.|+||||||+||||+||||.+|+... +...+.+++...++.++..+|.|.||++|+||||+|+||||++|
T Consensus 330 ---~a~~~gvkVvLsGeGaDElFgGY~~~~~ap---~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~~ 403 (578)
T PLN02549 330 ---KIKSLGVKMVLSGEGSDEIFGGYLYFHKAP---NKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLDKEF 403 (578)
T ss_pred ---HHHhcCCEEEEecCchHhhhcChHhhhhCC---CHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCCHHH
Confidence 346789999999999999999999886431 12235555555666666668899999999999999999999999
Q ss_pred HHHHhcCChhhhhccCCCCCCCchHHHHHHHHh----cCchhhhcCCCCcccCCch
Q 015804 317 IRTLLDIPLWEIANLDQPSGTGDKKILREVAKM----LGLYEAATLPKRAIQFGSR 368 (400)
Q Consensus 317 ve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~----~lP~~i~~R~K~g~q~gs~ 368 (400)
|++|++||+++|++-.+ ++..+|||||+|+++ +||++|+||+|.+|+.|.+
T Consensus 404 v~~a~~ip~~~k~~~~~-~~~~eK~iLR~a~~~~~~~~LP~~Il~R~K~~f~~~~g 458 (578)
T PLN02549 404 IDVAMSIDPEWKMIRPG-EGRIEKWVLRKAFDDEEDPYLPKHILWRQKEQFSDGVG 458 (578)
T ss_pred HHHHHhCCHHHHhcCCC-CCCCchHHHHHHHhhcCcccCCHHHhCCCccCCCCCCc
Confidence 99999999999752101 123589999999997 7999999999999988876
No 7
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-49 Score=387.83 Aligned_cols=284 Identities=19% Similarity=0.212 Sum_probs=225.3
Q ss_pred cCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc----C-------CCCChhHHHHH
Q 015804 14 LRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI----P-------ASVPCSMSVQR 82 (400)
Q Consensus 14 ~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~----~-------~~~~~~e~~~~ 82 (400)
.++..|||||+|+|-.. -+.|...||||++..+.+++. | +..+. ++ ..
T Consensus 151 ~~gs~~~aSe~k~l~d~-------------------C~~i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~~s~p~-d~-~~ 209 (543)
T KOG0571|consen 151 SDGSVYFASEMKCLEDD-------------------CEKIESFPPGHYYTSKTGKLTRYFNPEWFDENIPSTPL-DY-LA 209 (543)
T ss_pred CCCcEEEeeehhhhhhh-------------------hhceeecCCcceeecccccccCCCCchhhhccCCCCcc-cH-HH
Confidence 46688999999999752 135777999999998877632 1 12222 22 24
Q ss_pred HHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCC-----CCceeEEEeecCCCCCcc
Q 015804 83 VLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDP-----SYEIDLLNVSFDGQFAPD 157 (400)
Q Consensus 83 l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~-----~~~i~~ftvgf~~~~~~d 157 (400)
+|+.|.+||++|| .+|+|+||+||||||||+||++|++.... +.++++|+||+++ ++|
T Consensus 210 ~r~~~~~aV~KRL---------------M~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGle~--SPD 272 (543)
T KOG0571|consen 210 LRHTLEKAVRKRL---------------MTDVPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAIGLED--SPD 272 (543)
T ss_pred HHHHHHHHHHHHh---------------hccCceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEecCCC--Chh
Confidence 9999999999999 69999999999999999999999876541 2379999999986 789
Q ss_pred HHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCcccchh--HHHHHHHhcCCCcccccccCCCch
Q 015804 158 RISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTYMDLNI--GIALWLAAGGDGWVYEGVTSSNDV 235 (400)
Q Consensus 158 ~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 235 (400)
+.+||++|+++++.|+ .+... . ....+.+.++|++.|++--..| ++|+|++++
T Consensus 273 L~aarkVAd~igt~Hh-----e~~ft--~---qegidal~eVI~hLETYDvttIRastpmyLlsr--------------- 327 (543)
T KOG0571|consen 273 LLAARKVADFIGTIHH-----EHTFT--I---QEGIDALDEVIYHLETYDVTTIRASTPMYLLSR--------------- 327 (543)
T ss_pred HHHHHHHHHHhCCcce-----EEEEc--H---HHHHHHHHHHheeeeccccceEecCCchHHHHH---------------
Confidence 9999999999986553 22222 1 2235678888999987643333 789999996
Q ss_pred hhHHHHhhcCceEEEecccccccCCCCccchhhhcCCCcchhHHHHHHHHHHHHhhccCccchhhhcCCCcccCCCCCHH
Q 015804 236 DQQRVKYISKSRIILVGSGADEQCAGYGRHRTKYKHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCADNGKEARFPFLDED 315 (400)
Q Consensus 236 ~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~~~~~~l~~~l~~dl~~~~~~~L~r~Dr~sma~gvE~R~PFLD~~ 315 (400)
++ +++|+||||||||+||+||||-+++++ ++-..+.+|..+-+..++.....|.|+.+|+||+|+|+||||++
T Consensus 328 ---~I-kk~gvkmvlSGEGsDEifggYlYfh~A---Ps~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFLDk~ 400 (543)
T KOG0571|consen 328 ---KI-KKLGVKMVLSGEGSDEIFGGYLYFHKA---PSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFLDKR 400 (543)
T ss_pred ---HH-HhcceEEEEecCCchhhhcceeeeecC---CCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccccHH
Confidence 44 688999999999999999999988754 23445666766667777777788999999999999999999999
Q ss_pred HHHHHhcCChhhhhccCCCCCCCchHHHHHHHHh----cCchhhhcCCCCcccCCch
Q 015804 316 VIRTLLDIPLWEIANLDQPSGTGDKKILREVAKM----LGLYEAATLPKRAIQFGSR 368 (400)
Q Consensus 316 vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~----~lP~~i~~R~K~g~q~gs~ 368 (400)
++++|++|||++|+ +....|..+||+||.|+.. +||++|.||.|-.|.-|-|
T Consensus 401 F~~~~~sldPe~K~-~k~~~~r~eK~vlrsafd~~~~pyLP~eilwrqkeqfsdgVg 456 (543)
T KOG0571|consen 401 FLELAMSLDPEEKM-IKPKEGRIEKYVLRSAFDTTEKPYLPDEILWRQKEQFSDGVG 456 (543)
T ss_pred HHHHHhcCChhHhc-CCcchhhHHHHHHHhhcCCcCCCcChHHHHHHHHhhhccccc
Confidence 99999999999975 3322255689999999998 9999999999986644433
No 8
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=372.88 Aligned_cols=306 Identities=24% Similarity=0.227 Sum_probs=239.5
Q ss_pred hcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC-Cc-C------CC-CChhHHHH
Q 015804 11 VGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG-PI-P------AS-VPCSMSVQ 81 (400)
Q Consensus 11 ~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~-~~-~------~~-~~~~e~~~ 81 (400)
.++-.+.++||||+|+|++++.++ +|++|++|||||+++++.++ .. | .. .+.++.++
T Consensus 148 y~~~~~~l~faSE~Kal~~~~~~~--------------~~~~i~~l~pg~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 213 (542)
T COG0367 148 YTSKNENLAFASEIKALLAHPVVR--------------FLRDIKELPPGHLLEFTDGGLIRRYWRLSEKTSKESADELAE 213 (542)
T ss_pred EEecCCceEEEechhhhhhCCccc--------------ccCCeEEcCCCcEEEEcCCCceeeeecccccccccchHHHHH
Confidence 345556689999999999995443 89999999999999999876 22 1 22 46788999
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHH
Q 015804 82 RVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISA 161 (400)
Q Consensus 82 ~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A 161 (400)
+++++|.+||++|+ ++|+|||++||||||||+|++++++.... ....+||++|++...+|..+|
T Consensus 214 ~l~~~l~~sV~~r~---------------~advpvg~~lSGGlDSS~Iaa~a~~~~~~-~~~~~fsvg~~~~~~~D~~~a 277 (542)
T COG0367 214 HLRSLLEDAVKRRL---------------VADVPVGVFLSGGLDSSLIAAIAAEELGK-EGKTTFTVGFEDSDSPDAKYA 277 (542)
T ss_pred HHHHHHHHHHHHHh---------------ccCCcEEEEeCCCccHHHHHHHHHHhccc-cceeeeEeecCCCCCchHHHH
Confidence 99999999999999 69999999999999999999999988642 122359999998767899999
Q ss_pred HHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCcccchhHHHHHHHhcCCCcccccccCCCchhhHHHH
Q 015804 162 KAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTYMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQRVK 241 (400)
Q Consensus 162 ~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (400)
+.+|+.+++. |+.+.+. .+++... +.++++..+++...++++|+|++++ .+
T Consensus 278 ~~~A~~lg~~-----h~~~~~~--~~e~~~~---~~~vv~~~~~p~~~~~~~ply~~~~-------------------~a 328 (542)
T COG0367 278 RAVAKFLGTP-----HHEIILT--NEELLNA---LPEVVKALDTPGGMAASIPLYLLSR-------------------KA 328 (542)
T ss_pred HHHHHHhCCC-----cEEEeec--HHHHHHH---HHHHHhhcCCCCcccchhHHHHHHH-------------------hh
Confidence 9999999863 3334443 4566543 5555666666665677899999986 35
Q ss_pred hhcCceEEEecccccccCCCCc-cchhhhcCCCcchhHHHHHHHHHHHHhhccCccchhhhcCCCcccCCCCCHHHHHHH
Q 015804 242 YISKSRIILVGSGADEQCAGYG-RHRTKYKHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCADNGKEARFPFLDEDVIRTL 320 (400)
Q Consensus 242 ~~~g~kVvLsG~GaDElF~GY~-~~~~~~~~~~~~~l~~~l~~dl~~~~~~~L~r~Dr~sma~gvE~R~PFLD~~vve~a 320 (400)
.+.|+||+||||||||+||||+ ++.... ..+..+.+.+..++......++.++|++.|++++|.|+||+|.++++++
T Consensus 329 ~~~g~kVvLSGeGADElFgGY~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~~E~r~p~ld~~~~~l~ 406 (542)
T COG0367 329 RAEGEKVVLSGEGADELFGGYPPYSRFAP--GPEELLNEALRRALALIDYNRLARDDRVAAAFGVEARVPFLDRELVDLA 406 (542)
T ss_pred hhcCcEEeecCccHHHHhcCCchhhhhcc--chHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccCchHHHHHHHH
Confidence 6788999999999999999994 332211 2233445556656655555567889999999999999999999999999
Q ss_pred hcCChhhhhccCCCCCCCchHHHHHHHHhc--CchhhhcCCCCcccCCchhhHhhhhccCC
Q 015804 321 LDIPLWEIANLDQPSGTGDKKILREVAKML--GLYEAATLPKRAIQFGSRIARESNRKNFG 379 (400)
Q Consensus 321 ~~lP~~~k~k~~~~~g~~~K~iLR~a~~~~--lP~~i~~R~K~g~q~gs~~~~~~~~~~~~ 379 (400)
+++|+..++..+ +....|.++|.++... +|++|.+++|+.+|+|++..+...++.+-
T Consensus 407 l~~~~~~~i~~~--~~m~~~le~Rvpf~~~~~l~~~i~~~~K~~~~~gk~~lr~~~~~~~p 465 (542)
T COG0367 407 LKIPPEHKLNRD--RSMAKKLERRVPFSDGVELPEEIPWREKIAFGYGKGILRIAYEKILP 465 (542)
T ss_pred hcCCcccccchh--hhhhhhhheecccccchhhHhhCChhhhhhcCCcchhhHhhhhccCc
Confidence 999999865221 1123566777777776 89999999999999999999988777755
No 9
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-43 Score=345.22 Aligned_cols=290 Identities=42% Similarity=0.669 Sum_probs=252.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcccchhhh-hhhcc---cccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCC
Q 015804 77 SMSVQRVLNALRKSVMQRSSLHTIFQA-VICGR---RQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDG 152 (400)
Q Consensus 77 ~e~~~~l~~~L~~AV~~rl~~~~~~~~-~~~~~---~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~ 152 (400)
.+.+..+.+.|.+||+.|.. +++ +.|.+ +..-..+|+|+||||+||++||.++....+.+.+|.+.+|.|.+
T Consensus 214 ~~~v~~l~~~l~ds~k~rvl----~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n 289 (520)
T KOG0573|consen 214 SEVVSGLHTGLRDSLKDRVL----VIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGN 289 (520)
T ss_pred HHHHhhhHHHHHHHHhhhhh----ccChhHhhhccccccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccC
Confidence 45788899999999999963 333 55543 11234789999999999999999999988777899999999963
Q ss_pred C------CCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCcccchhHHHHHHHhcCCCccc
Q 015804 153 Q------FAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTYMDLNIGIALWLAAGGDGWVY 226 (400)
Q Consensus 153 ~------~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~ 226 (400)
+ ..+|+..++..++.|+..+|...|++++++++.+|+....+.|.++|+|..++||.+++.++||+++|.|.-.
T Consensus 290 ~e~~~~~~~PDRktgr~g~~eL~s~~P~R~~nlV~vnV~~~El~~~k~~I~~LiyP~dtvmD~SIgcafwFAsrg~G~~~ 369 (520)
T KOG0573|consen 290 PEGSKEQNVPDRKTGRRGLEELQSLYPKRSWNLVEVNVTYEELQKAKEHIKHLIYPKDTVMDLSIGCAFWFASRGRGVDS 369 (520)
T ss_pred CCcccccCCccHHHHHHHHHHHHHhCCcceEEEEeccCCHHHHHHHHHHHHHhhCcCccccccccceEEEEeeccccccc
Confidence 2 2389999999999999999999999999999999999888889999999999999999999999999877332
Q ss_pred ccccCCCchhhHHHHhhcCceEEEecccccccCCCCccchhhhcCCCcchhHHHHHHHHHHHHhhccCccchhhhcCCCc
Q 015804 227 EGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGRHRTKYKHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCADNGKE 306 (400)
Q Consensus 227 ~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~~~~~~l~~~l~~dl~~~~~~~L~r~Dr~sma~gvE 306 (400)
+. +.-++...+|+|+|.||||+||||.+|+..|..+....+.+++.+|+.++.++||.|+||+...+|+|
T Consensus 370 ~~----------~~sy~s~a~V~l~GsGADEllgGY~rhr~rf~~~~~e~l~eEl~~dl~rIs~RNLgRDDRViad~Gke 439 (520)
T KOG0573|consen 370 EN----------QQSYRSYARVALLGSGADELLGGYHRHRTRFEKEDLEGLREELERDLFRISHRNLGRDDRVIADSGKE 439 (520)
T ss_pred cC----------ccccccccEEEEecCChHHhhccHHHHHhhhccCCcHHHHHHHHHHHhhhhhcccCccchhhhccCce
Confidence 21 11256678999999999999999999998787666667999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHhcCChhhhhccCCCCCCCchHHHHHHHHhcCchhhhcCCCCcccCCchhhHhhhhccCCCcc
Q 015804 307 ARFPFLDEDVIRTLLDIPLWEIANLDQPSGTGDKKILREVAKMLGLYEAATLPKRAIQFGSRIARESNRKNFGSNR 382 (400)
Q Consensus 307 ~R~PFLD~~vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~~lP~~i~~R~K~g~q~gs~~~~~~~~~~~~~~~ 382 (400)
+|+||||..||.|..++|.+.|+.... .| ++|.+||++.+.+..+.+..-||++|||||+++||.+..+-.|+.
T Consensus 440 ~R~PFLde~vV~~~~~l~~~~k~~l~l-~G-G~KlllRe~~~~lGl~~~s~~pKrAmQFGSr~AKm~~~g~~~s~~ 513 (520)
T KOG0573|consen 440 VRSPFLDENVVKLSNALPVSVKMMLGL-RG-GEKLLLREAGRRLGLPSASTEPKRAMQFGSRMAKMEKKGDKSSDG 513 (520)
T ss_pred EeccchHHHHHHHHHhcchhHHhhhcc-cc-hhhHHHHHHHHHhCCCcccccchHHHHhhhhhhhcccCCCccCcc
Confidence 999999999999999999999865443 56 699999999999999999999999999999999999887755543
No 10
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=100.00 E-value=3.6e-42 Score=330.73 Aligned_cols=232 Identities=30% Similarity=0.354 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHH
Q 015804 84 LNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKA 163 (400)
Q Consensus 84 ~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~ 163 (400)
+++|.+||+.|+ ++++|||++||||+|||+|++++++... .++.+||++|+....+|..+|+.
T Consensus 1 r~~l~~av~~~~---------------~~~~~v~~~LSGGlDSs~va~~~~~~~~--~~~~~~~~~~~~~~~~e~~~a~~ 63 (269)
T cd01991 1 RELLEDAVRRRL---------------RSDVPVGVLLSGGLDSSLVAALAARLLP--EPVKTFSIGFGFEGSDEREYARR 63 (269)
T ss_pred ChHHHHHHHHHh---------------ccCCceEEeecccHHHHHHHHHHHHhhC--CCCceEEEeeCCCCCChHHHHHH
Confidence 478999999999 7999999999999999999999988753 34899999998766678999999
Q ss_pred HHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCcccchhHHHHHHHhcCCCcccccccCCCchhhHHHHhh
Q 015804 164 GLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTYMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQRVKYI 243 (400)
Q Consensus 164 ~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 243 (400)
+|++++. +++.+.++ ..++.. .+...++..+.++..+..+++|++++ .|.+
T Consensus 64 ~a~~l~~-----~~~~~~~~--~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~l~~-------------------~a~~ 114 (269)
T cd01991 64 VAEHLGT-----EHHEVEFT--PADLLA---ALPDVIWELDEPFADSSAIPLYLLSR-------------------LARK 114 (269)
T ss_pred HHHHhCC-----cceEEEcC--HHHHHH---HHHHHHHHhCCCCCCcHHHHHHHHHH-------------------HHHH
Confidence 9999973 33444433 344432 23333344444455555677787774 3567
Q ss_pred cCceEEEecccccccCCCCccchhhhcCC-C---c-------------chhHHHHHHHH-------------------HH
Q 015804 244 SKSRIILVGSGADEQCAGYGRHRTKYKHG-S---W-------------VGLDEEMKLDM-------------------QR 287 (400)
Q Consensus 244 ~g~kVvLsG~GaDElF~GY~~~~~~~~~~-~---~-------------~~l~~~l~~dl-------------------~~ 287 (400)
.|++|+|||+||||+|+||++|...+... . + ..+.+.+..++ ..
T Consensus 115 ~~~~v~l~G~g~Delf~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (269)
T cd01991 115 HGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRLLGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLT 194 (269)
T ss_pred hCCEEEEecCCccccccChHHHHHHHHHhhccccCcchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHH
Confidence 78899999999999999999886432100 0 0 01111111111 11
Q ss_pred H-HhhccCccchhhhcCCCcccCCCCCHHHHHHHhcCChhhhhccCCCCCCCchHHHHHHHHhcCchhhhcCCCCcccCC
Q 015804 288 I-WKRNLGRDDRCCADNGKEARFPFLDEDVIRTLLDIPLWEIANLDQPSGTGDKKILREVAKMLGLYEAATLPKRAIQFG 366 (400)
Q Consensus 288 ~-~~~~L~r~Dr~sma~gvE~R~PFLD~~vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~~lP~~i~~R~K~g~q~g 366 (400)
+ .+..|.+.|+++|++|+|+|+||||++|||||++||.++|+ . +| .+|||||+++++++|++|++|+|+||+++
T Consensus 195 ~~~~~~l~~~dr~~m~~gvE~R~PflD~~lve~~~~lP~~~k~--~--~~-~~K~iLR~a~~~~lP~~i~~r~K~g~~~p 269 (269)
T cd01991 195 YLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFALSLPPELKI--R--GG-REKYLLREAAAGLLPDEILWRPKRGFQVP 269 (269)
T ss_pred hcccchHHHhhHHHHHhcccccCCCCCHHHHHHHHcCCHHHhc--C--CC-CchHHHHHHHHhhCCHHHHcCCCCCCCCC
Confidence 1 12346789999999999999999999999999999999964 4 23 68999999999999999999999999864
No 11
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=100.00 E-value=6.3e-39 Score=303.49 Aligned_cols=228 Identities=28% Similarity=0.308 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHH
Q 015804 82 RVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISA 161 (400)
Q Consensus 82 ~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A 161 (400)
+|+++|.+||++|+ +++.|+|++||||+||++|++++++.. +.++.+||++|++...+|..+|
T Consensus 1 ~~r~~l~~av~~rl---------------~~~~~i~~~LSGGlDSs~i~~~~~~~~--~~~~~~~t~~~~~~~~~e~~~a 63 (255)
T PF00733_consen 1 ELRELLEEAVARRL---------------RSDKPIGILLSGGLDSSAIAALAARQG--GPPIKTFTIGFEDDDYDEREYA 63 (255)
T ss_dssp HHHHHHHHHHHHHC---------------GCTSEEEEE--SSHHHHHHHHHHHHTC--CSEEEEEEEECSSCC--HHHHH
T ss_pred CHHHHHHHHHHHHH---------------hcCCCEEEECCCChhHHHHHHHHHHhh--CCceeEEEEEcCCCcchhHHHH
Confidence 68999999999999 699999999999999999999999843 3589999999988666699999
Q ss_pred HHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCccc--chhHHHHHHHhcCCCcccccccCCCchhhHH
Q 015804 162 KAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTYMD--LNIGIALWLAAGGDGWVYEGVTSSNDVDQQR 239 (400)
Q Consensus 162 ~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (400)
+.+|++++.. ++.+..+.+++....+++... .+.+.. .+...+.+.+++
T Consensus 64 ~~va~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~------------------- 114 (255)
T PF00733_consen 64 RKVARHLGLE-------HHEIELDPEDLLDNLEDIIWR---LDGPSPLDDPNSLPLYLLAR------------------- 114 (255)
T ss_dssp HHHHHHHT-E-------EEEEEE-HHHHHHHHHHHHHH---HT---HHHHHHHHHHHHHHH-------------------
T ss_pred HHHhcccccc-------cceeeechhhHHHhHHHHHHH---HhCCcccccccccHHHHHHH-------------------
Confidence 9999999742 333333344554333333332 222222 334556666553
Q ss_pred HHhhcCceEEEecccccccCCCCccchhhhcCCCcc-hhHH------------------------HHHHHHHHHHhhccC
Q 015804 240 VKYISKSRIILVGSGADEQCAGYGRHRTKYKHGSWV-GLDE------------------------EMKLDMQRIWKRNLG 294 (400)
Q Consensus 240 ~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~~~~~-~l~~------------------------~l~~dl~~~~~~~L~ 294 (400)
.+.+.|++|+|||+||||+|+||++|...+....+. .... .......++....+.
T Consensus 115 ~a~~~~~~~~ltG~GgDelf~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (255)
T PF00733_consen 115 LARENGIRVLLTGQGGDELFGGYPRYRPAYLRPLLLGRLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLP 194 (255)
T ss_dssp HHCHTTBSEEE--TTHHHHHTTTT-TTGGGCGHCCHHHHHHHHHHHHHHCCCTHH----------------HHHHHHHSC
T ss_pred hhcccceeEEEeccccccccccchHhHHHHhhhhhhhhhhhhhhHHHHHHhhhccccccccccccccccccccccchhhh
Confidence 445689999999999999999998876554322111 1110 111122344556788
Q ss_pred ccchhhhcCCCcccCCCCCHHHHHHHhcCChhhhhccCCCCCCCchHHHHHHHHhcCchhhhcCCC
Q 015804 295 RDDRCCADNGKEARFPFLDEDVIRTLLDIPLWEIANLDQPSGTGDKKILREVAKMLGLYEAATLPK 360 (400)
Q Consensus 295 r~Dr~sma~gvE~R~PFLD~~vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~~lP~~i~~R~K 360 (400)
+.++++|.+|+|+|.||||.+||+||++||.++++ + +...|++||++|++++|++|++|||
T Consensus 195 ~~~~~~~~~g~~~~~PflD~~lv~~~~~lP~~~~~--~---~~~~K~llR~a~~~~lP~~i~~r~K 255 (255)
T PF00733_consen 195 RSDRASMAYGIEVRSPFLDRRLVEFCLSLPPEQRF--D---GGIYKYLLREAMKDLLPPEILWRKK 255 (255)
T ss_dssp CHCHHHHCTT-EEE-GGGSHHHHHHHHCB-GGGCC--E---TTECTHHHHHHHTCCS-HHHHTS-S
T ss_pred hhhhhhhhcccccCceecCHHHHHHHHhCCHHHHc--C---CCCCcHHHHHHHHhhCCHHHhcCCC
Confidence 99999999999999999999999999999999964 3 2358999999999999999999998
No 12
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.21 E-value=7.8e-11 Score=104.29 Aligned_cols=121 Identities=13% Similarity=0.055 Sum_probs=66.9
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchH
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETK 194 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~ 194 (400)
.+.++||||+||+++++++.+... .++.++++...-....+...++.++++ + +++..+.++ ..++...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~--~~v~~v~~~~g~~~~~~~~~~~~~a~~-g-----~~~~~~~~~--~~~~~~~-- 70 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG--LNPLAVTVDNGFNSEEAVKNIKNLIKK-G-----LDLDHLVIN--PEEMKDL-- 70 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC--CceEEEEeCCCCCCHHHHHHHHHHHHh-C-----CCeEEEecC--HHHHHHH--
Confidence 468999999999999999987642 134445543221112245677777776 3 123333333 2232211
Q ss_pred HHHhhcccCCCcccchhH-HHHHHHhcCCCcccccccCCCchhhHHHHhhcCceEEEecccccccCCCCccchh
Q 015804 195 HVMSLINPANTYMDLNIG-IALWLAAGGDGWVYEGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGRHRT 267 (400)
Q Consensus 195 ~i~~~i~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~ 267 (400)
....+....+.+. .... ...+++ .+.|++.|++++++|+++||+|+||++++.
T Consensus 71 ~~~~l~~~~~~p~-~~~~~~~~~~~-------------------~~~A~~~g~~~il~G~~~de~~~Gy~~~~~ 124 (154)
T cd01996 71 QLARFKAKVGDPC-WPCDTAIFTSL-------------------YKVALKFGIPLIITGENPAQEFGGIREEEG 124 (154)
T ss_pred HHHHHhcccCCCC-hhhhHHHHHHH-------------------HHHHHHhCcCEEEeCcCHHHhccccccccc
Confidence 0111110111110 0001 111122 235678899999999999999999998763
No 13
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.03 E-value=2.5e-09 Score=107.36 Aligned_cols=119 Identities=14% Similarity=0.063 Sum_probs=65.4
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCce-eEEEeecCCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccc
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEI-DLLNVSFDGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSE 192 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i-~~ftvgf~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~ 192 (400)
-.+.|.||||+|||.+++++++..+. .++ .+|+.+|.. ..+...++.++++++ ++ ++.+.++...+..
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~~gl-~~l~vt~~~~~~~--e~~~~n~~~~~~~lg-----vd--~~~i~~d~~~~~~- 128 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKKLGL-NPLLVTVDPGWNT--ELGVKNLNNLIKKLG-----FD--LHTITINPETFRK- 128 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHhCC-ceEEEEECCCCCC--HHHHHHHHHHHHHcC-----CC--eEEEeCCHHHHHH-
Confidence 45788899999999999887554321 122 233333321 123447888888885 23 3334333333321
Q ss_pred hHHHHhhcccCCCcccchhHHHHHHHhcCCCcccccccCCCchhhHHHHhhcCceEEEecccccccCCCCcc
Q 015804 193 TKHVMSLINPANTYMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGR 264 (400)
Q Consensus 193 ~~~i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~ 264 (400)
.....+.....+.-.........+. ++|.+.|+++|++|+++||+|+||..
T Consensus 129 --l~~~~~~~~~~pc~~c~~~~~~~l~-------------------~~A~~~gi~~Il~G~~~dE~fgGy~~ 179 (343)
T TIGR03573 129 --LQRAYFKKVGDPEWPQDHAIFASVY-------------------QVALKFNIPLIIWGENIAEEYGGDSE 179 (343)
T ss_pred --HHHHHHhccCCCchhhhhHHHHHHH-------------------HHHHHhCCCEEEeCCCHHHhcCCccc
Confidence 1112222111111001111122222 45678899999999999999999874
No 14
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.67 E-value=8.9e-08 Score=95.22 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=63.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCC
Q 015804 74 VPCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQ 153 (400)
Q Consensus 74 ~~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~ 153 (400)
.+.++.++++.+.|+++|+.|+ .++ +|++.||||+|||++++++.+... +.+++++.++..
T Consensus 10 ~~~~~~~e~i~~~l~~~V~~~~---------------~~~-~VvVgLSGGIDSSvvaaLa~~a~g---~~~v~av~~~~~ 70 (326)
T PRK00876 10 IDAAAEAERIRAAIREQVRGTL---------------RRR-GVVLGLSGGIDSSVTAALCVRALG---KERVYGLLMPER 70 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHc---------------CCC-CEEEEccCCHHHHHHHHHHHHhhC---CCcEEEEEecCC
Confidence 3567788999999999999998 466 899999999999999999988642 246788887642
Q ss_pred --CCccHHHHHHHHHHHh
Q 015804 154 --FAPDRISAKAGLKELR 169 (400)
Q Consensus 154 --~~~d~~~A~~~a~~l~ 169 (400)
..+|...|+.+|++++
T Consensus 71 ~s~~~e~~~A~~lA~~LG 88 (326)
T PRK00876 71 DSSPESLRLGREVAEHLG 88 (326)
T ss_pred CCChHHHHHHHHHHHHcC
Confidence 3467889999999996
No 15
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=98.63 E-value=3.8e-08 Score=92.54 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=55.1
Q ss_pred hhhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhh--------hhhcCceeeCCCcEEEEcCCC
Q 015804 9 CFVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHC--------ETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 9 ~~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~--------T~~~gI~~l~pG~~l~i~~~~ 68 (400)
.+.+..++.++||||+++|++++.+++.+|++++.+||. |+|++|++|||||+++++.++
T Consensus 145 Ly~~~~~~~~~~aSe~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~ 212 (220)
T cd00712 145 LYYGRDGGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGG 212 (220)
T ss_pred eEEEEECCEEEEEcchHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCC
Confidence 456677889999999999999999999999999999997 999999999999999998754
No 16
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.56 E-value=2.9e-07 Score=88.32 Aligned_cols=76 Identities=22% Similarity=0.181 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCC
Q 015804 76 CSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFA 155 (400)
Q Consensus 76 ~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~ 155 (400)
.++..+.+...|++.|+.. ....+.+.||||+||+++++++.+... ...+.++++.+.....
T Consensus 3 ~~~~~~~l~~~l~~~~~~~-----------------~~~~vvv~lSGGiDSs~~a~la~~~~~-~~~v~~~~~~~~~~~~ 64 (248)
T cd00553 3 LEEIINALVLFLRDYLRKS-----------------GFKGVVLGLSGGIDSALVAALAVRALG-RENVLALFMPSRYSSE 64 (248)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------CCCCEEEeCCCcHHHHHHHHHHHHHhC-cccEEEEECCCCCCCH
Confidence 3445555566666666544 234689999999999999999988763 1367888877654444
Q ss_pred ccHHHHHHHHHHHh
Q 015804 156 PDRISAKAGLKELR 169 (400)
Q Consensus 156 ~d~~~A~~~a~~l~ 169 (400)
.|...|+.++++++
T Consensus 65 ~~~~~a~~~a~~lg 78 (248)
T cd00553 65 ETREDAKELAEALG 78 (248)
T ss_pred HHHHHHHHHHHHhC
Confidence 67889999999986
No 17
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.55 E-value=5.6e-07 Score=86.45 Aligned_cols=73 Identities=25% Similarity=0.192 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCC--
Q 015804 76 CSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQ-- 153 (400)
Q Consensus 76 ~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~-- 153 (400)
.+.+.+++.+.|+++|+.+. .++++|| ||||+||+++++++.+... ...+.+.++..
T Consensus 2 ~~~~~~~l~~~l~~~v~~~~---------------~~~V~vg--lSGGiDSsvla~l~~~~~~----~~~~~~~~~~~~~ 60 (250)
T TIGR00552 2 LIKYVEEIEDFLRGYVQKSG---------------AKGVVLG--LSGGIDSAVVAALCVEALG----EQNHALLLPHSVQ 60 (250)
T ss_pred hhhHHHHHHHHHHHHHHHhC---------------CCCEEEE--CCCcHHHHHHHHHHHHhhC----CceEEEEECCccC
Confidence 35678899999999999986 4666665 9999999999999987652 14455545321
Q ss_pred -CCccHHHHHHHHHHHh
Q 015804 154 -FAPDRISAKAGLKELR 169 (400)
Q Consensus 154 -~~~d~~~A~~~a~~l~ 169 (400)
...|...|+.++++++
T Consensus 61 ~~~~e~~~a~~~a~~lg 77 (250)
T TIGR00552 61 TPEQDVQDALALAEPLG 77 (250)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 2347788999999986
No 18
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.53 E-value=6.7e-07 Score=86.02 Aligned_cols=116 Identities=19% Similarity=0.167 Sum_probs=70.5
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhcc
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTS 191 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~ 191 (400)
.-.++.++||||+||+++++++.+.. ..+.++++.++.....|...|+..|++++ +++.++.++ ++.
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~g---~~v~av~~~~~~~~~~e~~~a~~~a~~lg-----i~~~ii~~~----~~~- 77 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDAG---TEVLAITVVSPSISPRELEDAIIIAKEIG-----VNHEFVKID----KMI- 77 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHhC---CCEEEEEecCCCCCHHHHHHHHHHHHHcC-----CCEEEEEcH----HHH-
Confidence 44678999999999999999998763 36888888765433346778889998885 333433332 111
Q ss_pred chHHHHhhcccCCCcccchhHHHHHHHhcCCCcccccccCCCchhhHHHHhhcCceEEEecccccccCCCCcc
Q 015804 192 ETKHVMSLINPANTYMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGR 264 (400)
Q Consensus 192 ~~~~i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~ 264 (400)
..+.. .+.+... -.....|-.. .+.|.+.|+++|++|..+|+++.+++.
T Consensus 78 --~~~~~--n~~~~c~--~ck~~~~~~l------------------~~~A~~~g~~~I~~G~n~dD~~~~rpg 126 (252)
T TIGR00268 78 --NPFRA--NVEERCY--FCKKMVLSIL------------------VKEAEKRGYDVVVDGTNADDLFDHRPG 126 (252)
T ss_pred --HHHHh--CCCcccc--hhhHHHHHHH------------------HHHHHHcCCCEEEECCCCcccccccHH
Confidence 11111 0000000 0001111111 134678899999999999999875543
No 19
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.47 E-value=8.8e-07 Score=81.94 Aligned_cols=113 Identities=23% Similarity=0.158 Sum_probs=67.6
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHH
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKH 195 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~ 195 (400)
|.+++|||+||++++.++.+... ..+.++++.+......|...++..+++++. ++..+.++ . +. ...
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~--~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi-----~~~~~~~~--~--~~--~~~ 67 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG--DRVLAVTATSPLFPRRELEEAKRLAKEIGI-----RHEVIETD--E--LD--DPE 67 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCHHHHHHHHHHHHHcCC-----cEEEEeCC--c--cc--cHH
Confidence 46899999999999999987642 268888887654334567788999999862 33333332 1 11 011
Q ss_pred HHhhcccCCCcccchhHHHHHHHhcCCCcccccccCCCchhhHHHHhhcCceEEEecccccccCCCCc
Q 015804 196 VMSLINPANTYMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYG 263 (400)
Q Consensus 196 i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~ 263 (400)
+..- ..... .......|-.. .+.|.+.|++++++|..+|+++.+++
T Consensus 68 ~~~~---~~~~~-~~~r~~~~~~l------------------~~~a~~~g~~~I~~G~~~dD~~e~~~ 113 (202)
T cd01990 68 FAKN---PPDRC-YLCKKALYEAL------------------KEIAEELGLDVVLDGTNADDLGDYRP 113 (202)
T ss_pred HhcC---CCCcc-chhHHHHHHHH------------------HHHHHHCCCCEEEEcCccccCcccCh
Confidence 1110 00000 00011111111 13456789999999999999998754
No 20
>PRK13980 NAD synthetase; Provisional
Probab=98.46 E-value=2.3e-06 Score=83.01 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCC
Q 015804 75 PCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQF 154 (400)
Q Consensus 75 ~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~ 154 (400)
+.+...+++...|++.|++.- ...+.+.||||+||+++++++.+..+ ..++.++++.+....
T Consensus 9 ~~~~~~~~l~~~l~~~v~~~g-----------------~~~vvv~lSGGiDSsv~a~l~~~~~~-~~~v~av~~~~~~~~ 70 (265)
T PRK13980 9 DYEKVREIIVDFIREEVEKAG-----------------AKGVVLGLSGGIDSAVVAYLAVKALG-KENVLALLMPSSVSP 70 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHcC-----------------CCcEEEECCCCHHHHHHHHHHHHHhC-ccceEEEEeeCCCCC
Confidence 344555666666666665432 24678889999999999999988643 136888888765433
Q ss_pred CccHHHHHHHHHHHh
Q 015804 155 APDRISAKAGLKELR 169 (400)
Q Consensus 155 ~~d~~~A~~~a~~l~ 169 (400)
..|...|+.++++++
T Consensus 71 ~~~~~~a~~la~~lg 85 (265)
T PRK13980 71 PEDLEDAELVAEDLG 85 (265)
T ss_pred HHHHHHHHHHHHHhC
Confidence 457888999999986
No 21
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=98.32 E-value=4.5e-07 Score=84.25 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=43.8
Q ss_pred CCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 15 RKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 15 ~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
.+.++||||+|+|+++|+++.++|...... -.|+|+||++|||||+++++.++
T Consensus 133 ~~~l~FASEikaLla~~~~~~~~d~~~~~~-~~T~~~gI~rL~PG~~l~~~~~g 185 (199)
T cd01909 133 AGEVWATTELKLLAAHEGPKAFPFKSAGAD-TVSGLTGVQRVPPGTVNVLTFDG 185 (199)
T ss_pred CCeEEEEeCHHHHhhCcCCCcccCcccCCC-CCChhcCceEECCCcEEEEeeCC
Confidence 388999999999999999999988842110 01999999999999999998664
No 22
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.30 E-value=3.3e-06 Score=80.18 Aligned_cols=116 Identities=22% Similarity=0.211 Sum_probs=72.4
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchH
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETK 194 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~ 194 (400)
.+.+++|||+|||+++.+|.+..+ ..+-++|+..+--...+...|+..|+.++ +.|.++.++.- + +
T Consensus 19 kv~vAfSGGvDSslLa~la~~~lG--~~v~AvTv~sP~~p~~e~e~A~~~A~~iG-----i~H~~i~~~~~--~-----~ 84 (269)
T COG1606 19 KVVVAFSGGVDSSLLAKLAKEALG--DNVVAVTVDSPYIPRREIEEAKNIAKEIG-----IRHEFIKMNRM--D-----P 84 (269)
T ss_pred eEEEEecCCccHHHHHHHHHHHhc--cceEEEEEecCCCChhhhhHHHHHHHHhC-----Ccceeeehhhc--c-----h
Confidence 789999999999999999988774 57889998764322235678888898886 44555655421 0 0
Q ss_pred HHHhhcccCCCcccchhHHHHHHHhcCCCcccccccCCCchhhHHHHhhcCceEEEecccccccCCCCccch
Q 015804 195 HVMSLINPANTYMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGRHR 266 (400)
Q Consensus 195 ~i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~ 266 (400)
++.. ++. -..|+.-+. + |.. +.+.|.+.|+.||++|--+|++|++=|-++
T Consensus 85 ~~~~--n~~---------~rCY~CK~~---v-------~~~-l~~~a~~~Gyd~V~dGtNasDl~~~RPG~r 134 (269)
T COG1606 85 EFKE--NPE---------NRCYLCKRA---V-------YST-LVEEAEKRGYDVVADGTNASDLFDYRPGLR 134 (269)
T ss_pred hhcc--CCC---------CcchHHHHH---H-------HHH-HHHHHHHcCCCEEEeCCcHHHhcCCCcchh
Confidence 1110 111 112322110 0 000 023456789999999999999997434443
No 23
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.29 E-value=9.4e-06 Score=76.07 Aligned_cols=164 Identities=17% Similarity=0.229 Sum_probs=78.5
Q ss_pred EEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhcc-----
Q 015804 117 AVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTS----- 191 (400)
Q Consensus 117 gv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~----- 191 (400)
-++||||+||++.++++.+.. ..+.++++.|......|..+|+.++++++.. +|+++.++. ..++..
T Consensus 3 vvl~SGG~DSt~~l~~~~~~~---~~v~al~~~YGq~~~~El~~a~~i~~~l~v~----~~~~i~l~~-~~~~~~s~L~~ 74 (209)
T PF06508_consen 3 VVLFSGGLDSTTCLYWAKKEG---YEVYALTFDYGQRHRRELEAAKKIAKKLGVK----EHEVIDLSF-LKEIGGSALTD 74 (209)
T ss_dssp EEE--SSHHHHHHHHHHHHH----SEEEEEEEESSSTTCHHHHHHHHHHHHCT-S----EEEEEE-CH-HHHCSCHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHcC---CeEEEEEEECCCCCHHHHHHHHHHHHHhCCC----CCEEeeHHH-HHhhCCCcccC
Confidence 489999999999999988775 4788999988766556788999999998620 334444430 122211
Q ss_pred chHHHHhhcccCC--CcccchhHHHHHHHhcCCCcccccccCCCchhhHHHHhhcCceEEEecccccccCCCCccchhhh
Q 015804 192 ETKHVMSLINPAN--TYMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGRHRTKY 269 (400)
Q Consensus 192 ~~~~i~~~i~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~ 269 (400)
....+...-...+ +.--+|. -...+++-+ ...|...|+..|+.|-=+++ +.||+.-+..|
T Consensus 75 ~~~~v~~~~~~~~~~~~t~vP~-RN~l~lsiA----------------a~~A~~~g~~~i~~G~~~~D-~~~ypDc~~~F 136 (209)
T PF06508_consen 75 DSIEVPEEEYSEESIPSTYVPF-RNGLFLSIA----------------ASYAESLGAEAIYIGVNAED-ASGYPDCRPEF 136 (209)
T ss_dssp TT------------------TT-HHHHHHHHH----------------HHHHHHHT-SEEEE---S-S-TT--GGGSHHH
T ss_pred CCcCCcccccccCCCCceEEec-CcHHHHHHH----------------HHHHHHCCCCEEEEEECcCc-cCCCCCChHHH
Confidence 0001111000000 0000121 111122100 01345678888888887766 56787654322
Q ss_pred cCCCcchhHHHHHHHHHHHHhhccCccchhhhcCCCcccCCCCCH---HHHHHHhcCChh
Q 015804 270 KHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCADNGKEARFPFLDE---DVIRTLLDIPLW 326 (400)
Q Consensus 270 ~~~~~~~l~~~l~~dl~~~~~~~L~r~Dr~sma~gvE~R~PFLD~---~vve~a~~lP~~ 326 (400)
-+. ++..+... +...+++..||++. ++++.+..+...
T Consensus 137 --------~~~----~~~~~~~~--------~~~~v~i~~P~~~~tK~eiv~~~~~lg~~ 176 (209)
T PF06508_consen 137 --------IDA----MNRLLNLG--------EGGPVRIETPLIDLTKAEIVKLGVELGVP 176 (209)
T ss_dssp --------HHH----HHHHHHHH--------HTS--EEE-TTTT--HHHHHHHHHHTTHH
T ss_pred --------HHH----HHHHHHhc--------CCCCEEEEecCCCCCHHHHHHHHHHcCCC
Confidence 111 22222111 44688999999985 677777776543
No 24
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.19 E-value=3.8e-06 Score=78.75 Aligned_cols=51 Identities=31% Similarity=0.349 Sum_probs=44.0
Q ss_pred EEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhh
Q 015804 117 AVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRG 170 (400)
Q Consensus 117 gv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~ 170 (400)
-|.||||+||+.+++.|.+.. ..+.+.|+.|......|+..|+.+|++|+.
T Consensus 6 vvl~SGG~DStt~l~~a~~~~---~ev~alsfdYGQrh~~Ele~A~~iak~lgv 56 (222)
T COG0603 6 VVLLSGGLDSTTCLAWAKKEG---YEVHALTFDYGQRHRKELEAAKELAKKLGV 56 (222)
T ss_pred EEEccCChhHHHHHHHHHhcC---CEEEEEEeeCCCCcHHHHHHHHHHHHHcCC
Confidence 488999999999999998875 478999988876666788999999999974
No 25
>PRK14561 hypothetical protein; Provisional
Probab=98.10 E-value=1.5e-05 Score=73.86 Aligned_cols=49 Identities=33% Similarity=0.396 Sum_probs=36.0
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.|+++||||+||+++++++.+.. .-.+.+|+.++ .+|..+|+..|++++
T Consensus 2 kV~ValSGG~DSslll~~l~~~~--~v~a~t~~~g~----~~e~~~a~~~a~~lG 50 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFY--DVELVTVNFGV----LDSWKHAREAAKALG 50 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcC--CeEEEEEecCc----hhHHHHHHHHHHHhC
Confidence 37999999999999999887652 11233444444 347888999999986
No 26
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.05 E-value=2.5e-05 Score=70.58 Aligned_cols=54 Identities=24% Similarity=0.264 Sum_probs=38.5
Q ss_pred eEEEecCCcchHHHHHHHHhhcCC---CCceeEEEeecCCCC--CccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDP---SYEIDLLNVSFDGQF--APDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~---~~~i~~ftvgf~~~~--~~d~~~A~~~a~~l~ 169 (400)
|.+.+|||.||++++.++.+.... +.++.++++.+.... ..+...++..+++++
T Consensus 2 v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 60 (185)
T cd01993 2 ILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELG 60 (185)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcC
Confidence 689999999999999998876421 125677777654321 245667888888875
No 27
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=97.95 E-value=2.3e-05 Score=72.64 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=40.6
Q ss_pred EEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 117 AVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 117 gv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.++||||+||+++++++.+.. .++.++++.+......|...++.++++++
T Consensus 2 vv~lSGG~DSs~~~~~~~~~g---~~v~~~~~~~~~~~~~e~~~a~~~a~~lg 51 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDEG---YEVHAITFDYGQRHSRELESARKIAEALG 51 (201)
T ss_pred EEEeccHHHHHHHHHHHHHcC---CcEEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 589999999999999988753 47889998876443457788999999986
No 28
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=97.92 E-value=3.5e-05 Score=73.34 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=42.5
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.+.|+||||+||+++++++.+.. ..+.++|+.+......|+..|+.+|++++
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~---~~v~alt~dygq~~~~El~~a~~ia~~~g 54 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQY---DEVHCVTFDYGQRHRAEIDVARELALKLG 54 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcC---CeEEEEEEEeCCCCHHHHHHHHHHHHHcC
Confidence 57899999999999999986643 36888888887544568889999999986
No 29
>PRK04527 argininosuccinate synthase; Provisional
Probab=97.89 E-value=7.9e-05 Score=76.03 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=43.7
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
..|.+++|||+|||++++++.+.. ..+.++|+.+......|...|+..|++++
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~G---~~Viavt~d~gq~~~~El~~a~~~A~~lG 55 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQERG---YAVHTVFADTGGVDAEERDFIEKRAAELG 55 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHcC---CcEEEEEEEeCCCCHHHHHHHHHHHHHcC
Confidence 478999999999999999988753 57899998876544568888999999986
No 30
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=97.78 E-value=0.00025 Score=64.22 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=27.6
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCC
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDG 152 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~ 152 (400)
+.++||||+||++++.++.+.+ .++.++++.+..
T Consensus 2 vlv~~SGG~DS~~la~ll~~~g---~~v~av~~d~g~ 35 (177)
T cd01712 2 ALALLSGGIDSPVAAWLLMKRG---IEVDALHFNSGP 35 (177)
T ss_pred EEEEecCChhHHHHHHHHHHcC---CeEEEEEEeCCC
Confidence 6799999999999999998863 467778777543
No 31
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=97.75 E-value=0.00016 Score=72.81 Aligned_cols=52 Identities=33% Similarity=0.300 Sum_probs=40.6
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCC----------CCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQ----------FAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~----------~~~d~~~A~~~a~~l~ 169 (400)
.|++++|||+||++++.++.+.. ..+.++++.+... ...|...|+.+|++++
T Consensus 2 kVlValSGGvDSsvla~lL~~~G---~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~Lg 63 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQG---YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLG 63 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcC---CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcC
Confidence 57999999999999999998763 4688888876321 1246778999999885
No 32
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=97.65 E-value=0.00033 Score=70.66 Aligned_cols=51 Identities=33% Similarity=0.271 Sum_probs=38.1
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCC--------CCCccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDG--------QFAPDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~--------~~~~d~~~A~~~a~~l~ 169 (400)
|++++|||+|||++++++.+.. ..+.++++.... ....|...|+.+|++++
T Consensus 2 VlValSGGvDSsvla~lL~~~g---~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lg 60 (349)
T cd01998 2 VVVAMSGGVDSSVAAALLKEQG---YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLG 60 (349)
T ss_pred EEEEecCCHHHHHHHHHHHHcC---CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhC
Confidence 7899999999999999998863 356666654211 11256778999999986
No 33
>PTZ00323 NAD+ synthase; Provisional
Probab=97.63 E-value=0.0006 Score=67.14 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=39.0
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCC-CCc-eeEEEeecC-CCCCccHHHHHHHHHHHh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDP-SYE-IDLLNVSFD-GQFAPDRISAKAGLKELR 169 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~-~~~-i~~ftvgf~-~~~~~d~~~A~~~a~~l~ 169 (400)
...+.+.||||+||+++++++.+..+. ..+ ....++.-+ .+...+...|+.++++++
T Consensus 46 ~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lG 105 (294)
T PTZ00323 46 LKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACG 105 (294)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 467889999999999999999887642 111 233343333 112356778999999886
No 34
>PRK00509 argininosuccinate synthase; Provisional
Probab=97.62 E-value=0.0002 Score=73.18 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=42.1
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.|.+++|||+|||+++.++.+.. +..+.++++..... .|...|+..|++++
T Consensus 4 kVvva~SGGlDSsvla~~l~e~l--G~eViavt~d~Gq~--~dle~a~~~A~~lG 54 (399)
T PRK00509 4 KVVLAYSGGLDTSVIIKWLKETY--GCEVIAFTADVGQG--EELEPIREKALKSG 54 (399)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhh--CCeEEEEEEecCCH--HHHHHHHHHHHHcC
Confidence 68999999999999999988753 24689999887543 58888999999986
No 35
>PRK13981 NAD synthetase; Provisional
Probab=97.61 E-value=0.00033 Score=74.55 Aligned_cols=76 Identities=20% Similarity=0.149 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHH
Q 015804 80 VQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRI 159 (400)
Q Consensus 80 ~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~ 159 (400)
.+++.+.|...++..+. ......+.+.||||+||+++++++.+..+ ...+.++++.+......+..
T Consensus 260 ~~~~~~~l~~~l~~~~~-------------~~~~~~~vvglSGGiDSa~~a~la~~a~g-~~~v~~~~~p~~~~~~~~~~ 325 (540)
T PRK13981 260 EAEDYRALVLGLRDYVR-------------KNGFPGVVLGLSGGIDSALVAAIAVDALG-AERVRAVMMPSRYTSEESLD 325 (540)
T ss_pred HHHHHHHHHHHHHHHHH-------------HcCCCeEEEECCCCHHHHHHHHHHHHHhC-cCcEEEEECCCCCCCHHHHH
Confidence 45677777777777763 01345778999999999999999988753 13577777765443335677
Q ss_pred HHHHHHHHHh
Q 015804 160 SAKAGLKELR 169 (400)
Q Consensus 160 ~A~~~a~~l~ 169 (400)
.|+.+|+.++
T Consensus 326 ~a~~~a~~lg 335 (540)
T PRK13981 326 DAAALAKNLG 335 (540)
T ss_pred HHHHHHHHcC
Confidence 8999999986
No 36
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=97.57 E-value=0.0013 Score=65.47 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHH-HHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGL-KELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a-~~l~ 169 (400)
.+..+.++||||+||+++++++.+..+ .++.++++...-....|...+.+.+ ++++
T Consensus 15 ~~~kVvValSGGVDSsvla~ll~~~~G--~~v~av~vd~G~~~~~E~e~~~~~~~~~lg 71 (311)
T TIGR00884 15 GDAKVIIALSGGVDSSVAAVLAHRAIG--DRLTCVFVDHGLLRKGEAEQVVKTFGDRLG 71 (311)
T ss_pred CCCcEEEEecCChHHHHHHHHHHHHhC--CCEEEEEEeCCCCChHHHHHHHHHHHHHcC
Confidence 346789999999999999999987642 4688888775432234555555543 4564
No 37
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=97.55 E-value=0.00041 Score=70.21 Aligned_cols=55 Identities=29% Similarity=0.219 Sum_probs=42.2
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCC--CCccHHHHHHHHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQ--FAPDRISAKAGLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~--~~~d~~~A~~~a~~l~ 169 (400)
.+..|.+++|||+||+++++++++.. ..+.++++.+... ...|...|+.+|++++
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~~G---~~V~~v~~~~~~~~~~~~d~~~a~~va~~Lg 60 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLEAG---YEVTGVTFRFYEFNGSTEYLEDARALAERLG 60 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHcC---CeEEEEEEecCCCCCChHHHHHHHHHHHHhC
Confidence 55689999999999999999998863 4688887764221 1235778899999986
No 38
>PRK08349 hypothetical protein; Validated
Probab=97.53 E-value=0.00097 Score=61.72 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=37.6
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRG 170 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~ 170 (400)
.+-+++|||+||++.+.++.+.. .++.++++.+ + ..+...++..+++++.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g---~~v~av~~d~-~--~~~~~~~~~~~~~l~~ 51 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRG---VEVYPVHFRQ-D--EKKEEKVRELVERLQE 51 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcC---CeEEEEEEeC-C--HHHHHHHHHHHHHHHH
Confidence 35689999999999999887753 4677777765 2 3456677888888864
No 39
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=97.49 E-value=0.0006 Score=56.24 Aligned_cols=33 Identities=42% Similarity=0.554 Sum_probs=26.3
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecC
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFD 151 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~ 151 (400)
+.+.+|||+||++++.++.+.. .++.++++...
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~---~~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG---YQVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC---CCEEEEEEcCC
Confidence 4789999999999999998864 25777776654
No 40
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.48 E-value=0.00084 Score=62.36 Aligned_cols=116 Identities=20% Similarity=0.293 Sum_probs=56.6
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEee---cCCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVS---FDGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNL 189 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvg---f~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~ 189 (400)
...+-++||||+||.+-+.++.+.+ -.+...++. |.++ .....++..++.+..-.++.+.++..++ ..++
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~krG---~~V~~l~f~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~l~~v~--~~~~ 75 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKRG---CEVIALHFDSPPFTGE--KAREKVEELAEKLSEYSPGHKIRLYVVD--FTEV 75 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCBT----EEEEEEEE-TTTSSC--CCHHHHHHHHHHHHCCSTTS-EEEEEEC--HHHH
T ss_pred CceEEEEecCCccHHHHHHHHHHCC---CEEEEEEEECCCCCCH--HHHHHHHHHHHHHHHhCCCcceeEEEEC--cHHH
Confidence 3456789999999999888888764 356555543 2222 2344567777777654444455666655 2333
Q ss_pred ccchHHHHhhcccCCCcccchhHHHHHHHhcCCCcccccccCCCchhhHHHHhhcCceEEEeccccccc
Q 015804 190 TSETKHVMSLINPANTYMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQRVKYISKSRIILVGSGADEQ 258 (400)
Q Consensus 190 ~~~~~~i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDEl 258 (400)
. .++..-..+..+..+ .-..+|..+ .++|.+.|.+.++|||---.+
T Consensus 76 ~---~~i~~~~~~~~~ci~--ckr~M~r~A------------------~~ia~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 76 Q---KEILRGVKERNPCID--CKRFMYRIA------------------EEIAEEEGADAIVTGESLGQV 121 (197)
T ss_dssp H---HHHHHHS-GGGHHHH--HHHHHHHHH------------------HHHHHHTT--EEE----SSST
T ss_pred H---HHHHhcCCccchhHH--HHHHHHHHH------------------HHHHHHCCCCEEEeCchhHHH
Confidence 2 222221111100000 011223333 246778899999999865544
No 41
>PLN00200 argininosuccinate synthase; Provisional
Probab=97.46 E-value=0.00035 Score=71.57 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=42.3
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
..|.+++|||+|||+++.++.+.. +..+.++++.... ...|...++..|++++
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~--G~eViav~id~Gq-~~~el~~a~~~A~~lG 58 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY--GCEVVCFTADVGQ-GIEELEGLEAKAKASG 58 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh--CCeEEEEEEECCC-ChHHHHHHHHHHHHcC
Confidence 478999999999999999887752 2468888887653 2357888999999886
No 42
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=97.44 E-value=0.00074 Score=69.22 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=64.1
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeec-CCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhc
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSF-DGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLT 190 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf-~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~ 190 (400)
++.++.++||||+||+++++++.+.+ .++.+.++.. +.....+...++..|+.++...+++ ++..++.+ ++.
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G---~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i--~~~vv~~~--~~~ 247 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRG---VEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRI--KLHVVPFT--EIQ 247 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCC---CEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCC--cEEEEECH--HHH
Confidence 34455689999999999999987753 3566666522 2111235667888888886432223 34444432 221
Q ss_pred cchHHHHhhcccCCCcccchhHHHHHHHhcCCCcccccccCCCchhhHHHHhhcCceEEEecccccccC
Q 015804 191 SETKHVMSLINPANTYMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQRVKYISKSRIILVGSGADEQC 259 (400)
Q Consensus 191 ~~~~~i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF 259 (400)
..+..... +.....+.--.+|-.+ ...|.+.|+.++.||+=.|.+.
T Consensus 248 ---~~i~~~~~--~~~~~v~~Rr~~~~~a------------------~~~A~~~g~~~IvtG~~~~d~~ 293 (394)
T PRK01565 248 ---EEIKKKVP--ESYLMTLMRRFMMRIA------------------DKIAEKRGALAIVTGESLGQVA 293 (394)
T ss_pred ---HHHhhcCC--CceEEEeHHHHHHHHH------------------HHHHHHcCCCEEEEcccccccc
Confidence 12222111 1111111111222222 2356788999999998877664
No 43
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=97.43 E-value=0.00029 Score=63.25 Aligned_cols=51 Identities=31% Similarity=0.389 Sum_probs=39.0
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
+.+++|||+||++++.++.+.. .++.++++.+......|...++..+++++
T Consensus 2 vlv~~SGG~DS~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~g 52 (169)
T cd01995 2 AVVLLSGGLDSTTCLAWAKKEG---YEVHALSFDYGQRHAKEEEAAKLIAEKLG 52 (169)
T ss_pred EEEEecCcHHHHHHHHHHHHcC---CcEEEEEEECCCCChhHHHHHHHHHHHHC
Confidence 6799999999999999988764 36888888764332345677788887775
No 44
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=97.40 E-value=0.00063 Score=65.19 Aligned_cols=55 Identities=27% Similarity=0.213 Sum_probs=39.2
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
..+-+.||||+||+++|+++.+..+ ...+.++.+.-......|...|+.+++.++
T Consensus 19 ~~vVvglSGGiDSav~A~La~~Alg-~~~v~~v~mp~~~~~~~~~~~A~~la~~lg 73 (242)
T PF02540_consen 19 KGVVVGLSGGIDSAVVAALAVKALG-PDNVLAVIMPSGFSSEEDIEDAKELAEKLG 73 (242)
T ss_dssp SEEEEEETSSHHHHHHHHHHHHHHG-GGEEEEEEEESSTSTHHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhh-hccccccccccccCChHHHHHHHHHHHHhC
Confidence 4567889999999999999998763 135666665411122345678999999986
No 45
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=97.37 E-value=0.00077 Score=68.99 Aligned_cols=50 Identities=24% Similarity=0.261 Sum_probs=39.7
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
|.+++|||+||++++.++.+.. ..+.++++..... ..|...++..|+.++
T Consensus 2 Vvla~SGGlDSsvll~~l~e~g---~~V~av~id~Gq~-~~e~~~a~~~a~~lG 51 (394)
T TIGR00032 2 VVLAYSGGLDTSVCLKWLREKG---YEVIAYTADVGQP-EEDIDAIPEKALEYG 51 (394)
T ss_pred EEEEEcCCHHHHHHHHHHHHcC---CEEEEEEEecCCC-hHHHHHHHHHHHHhC
Confidence 6899999999999999988762 4688888876432 457778888888886
No 46
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.36 E-value=0.00088 Score=61.09 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=36.5
Q ss_pred eEEEecCCcchHHHHHHHHhhcCC-CCceeEEEeecCCCC--CccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDP-SYEIDLLNVSFDGQF--APDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~-~~~i~~ftvgf~~~~--~~d~~~A~~~a~~l~ 169 (400)
|.+.+|||.||++++.++.+.... +.++.++++.+.-.. ..+...++..++.++
T Consensus 2 v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~g 58 (189)
T TIGR02432 2 ILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLN 58 (189)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcC
Confidence 689999999999999998775321 235777776643221 124566777777764
No 47
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=97.36 E-value=0.00088 Score=68.40 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=39.5
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
|.+++|||+|||+++.++.+... ..+.++++.+... .++...++..|+.++
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~--~eV~av~~d~Gq~-~~~~e~a~~~a~~lG 51 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGG--YEVIAVTADVGQP-EEEIEAIEEKALKLG 51 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCC--CeEEEEEEECCCc-chhHHHHHHHHHHcC
Confidence 46899999999999999987642 3688999887643 233478888888886
No 48
>PRK00919 GMP synthase subunit B; Validated
Probab=97.30 E-value=0.00088 Score=66.38 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=39.8
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHH
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKE 167 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~ 167 (400)
.+..+.+.||||+||+++++++.+..+ ..+.++++...-....|...++..+++
T Consensus 20 ~~~kVlVa~SGGVDSsvla~la~~~lG--~~v~aV~vD~G~~~~~E~e~a~~~~~~ 73 (307)
T PRK00919 20 GDGKAIIALSGGVDSSVAAVLAHRAIG--DRLTPVFVDTGLMRKGETERIKETFSD 73 (307)
T ss_pred CCCCEEEEecCCHHHHHHHHHHHHHhC--CeEEEEEEECCCCCHHHHHHHHHHHhc
Confidence 447899999999999999999987542 468888877643333466677766654
No 49
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=97.29 E-value=0.004 Score=60.12 Aligned_cols=76 Identities=21% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHH-hcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCC---CCceeEEEeecCCCC
Q 015804 79 SVQRVLNALRKSVMQR-SSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDP---SYEIDLLNVSFDGQF 154 (400)
Q Consensus 79 ~~~~l~~~L~~AV~~r-l~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~---~~~i~~ftvgf~~~~ 154 (400)
..+.+...+.+++++. +. ....+|.+.+|||.||++++.++.+.... +..+.++++.+....
T Consensus 8 ~~~~~~~~v~~~i~~~~li--------------~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~ 73 (258)
T PRK10696 8 LQKRLRRQVGQAIADFNMI--------------EEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPG 73 (258)
T ss_pred HHHHHHHHHHHHHHHcCCC--------------CCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCC
Confidence 3455777777777765 31 35568999999999999999988765321 124566666543222
Q ss_pred CccHHHHHHHHHHHh
Q 015804 155 APDRISAKAGLKELR 169 (400)
Q Consensus 155 ~~d~~~A~~~a~~l~ 169 (400)
. +...++..++.++
T Consensus 74 ~-~~~~~~~~~~~lg 87 (258)
T PRK10696 74 F-PEHVLPEYLESLG 87 (258)
T ss_pred C-CHHHHHHHHHHhC
Confidence 2 3335677777775
No 50
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=97.29 E-value=0.0027 Score=64.66 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=43.8
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCC-CccHHHHHHHHHHHhhcCCcccceEEEec
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQF-APDRISAKAGLKELRGIAPLRRWKLVEID 183 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~-~~d~~~A~~~a~~l~~~~~~~~~~l~~i~ 183 (400)
+...+.++||||+||++.++++.+.+ .++.++++.+.... ..+...++..+++++. ++.+++++.++
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG---~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~--~~~~~~l~~v~ 238 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRG---CRVVAVHFFNEPAASEKAREKVERLANSLNE--TGGSVKLYVFD 238 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcC---CeEEEEEEeCCCCccHHHHHHHHHHHHHHhh--cCCCceEEEEe
Confidence 45567899999999999999997753 46777776643222 2345677788887753 11223455554
No 51
>PRK13820 argininosuccinate synthase; Provisional
Probab=97.28 E-value=0.0014 Score=67.10 Aligned_cols=52 Identities=29% Similarity=0.401 Sum_probs=40.4
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCC-ceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSY-EIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~-~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.|.+++|||+||++++.++++.. +. .+.++++.... ...|...++..|+.++
T Consensus 4 kVvvA~SGGvDSsvll~lL~e~~--g~~~Viav~vd~g~-~~~e~~~a~~~a~~lG 56 (394)
T PRK13820 4 KVVLAYSGGLDTSVCVPLLKEKY--GYDEVITVTVDVGQ-PEEEIKEAEEKAKKLG 56 (394)
T ss_pred eEEEEEeCcHHHHHHHHHHHHhc--CCCEEEEEEEECCC-ChHHHHHHHHHHHHcC
Confidence 58999999999999999987753 23 68888877642 2347778888988886
No 52
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.24 E-value=0.0021 Score=65.59 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=44.7
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhhcCCcccceEEEec
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRGIAPLRRWKLVEID 183 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~ 183 (400)
+...+.+++|||+||++.+.++.+.+ .++.++++... ..+...++..++.|+.-+++.+.++..++
T Consensus 179 s~gkvlvllSGGiDSpVAa~ll~krG---~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~v~ 244 (381)
T PRK08384 179 TQGKVVALLSGGIDSPVAAFLMMKRG---VEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIVVK 244 (381)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHcC---CeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEEEC
Confidence 45667899999999999999998864 46777766432 23456677888887643333334455554
No 53
>PLN02347 GMP synthetase
Probab=97.18 E-value=0.0015 Score=69.37 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=40.6
Q ss_pred cCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHH-HHHHHHHh
Q 015804 111 EEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISA-KAGLKELR 169 (400)
Q Consensus 111 ~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A-~~~a~~l~ 169 (400)
.++..+.+.||||+|||++++++.+..+ .++.++++...--...|...+ +..+++++
T Consensus 227 ~~~~~vvvalSGGVDSsvla~l~~~alG--~~v~av~id~g~~~~~E~~~~~~~~a~~lg 284 (536)
T PLN02347 227 GPDEHVICALSGGVDSTVAATLVHKAIG--DRLHCVFVDNGLLRYKEQERVMETFKRDLH 284 (536)
T ss_pred ccCCeEEEEecCChhHHHHHHHHHHHhC--CcEEEEEEeCCCCChhHHHHHHHHHHHHcC
Confidence 3577899999999999999999998653 467888876432223344444 66777775
No 54
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.18 E-value=0.0028 Score=58.75 Aligned_cols=51 Identities=20% Similarity=-0.006 Sum_probs=35.9
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCC------CccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQF------APDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~------~~d~~~A~~~a~~l~ 169 (400)
+.+++|||.||++.+.++.+.. ..+.++++..+... ..+...++..|+.++
T Consensus 2 v~v~~SGGkDS~~al~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lg 58 (194)
T cd01994 2 VVALISGGKDSCYALYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMG 58 (194)
T ss_pred EEEEecCCHHHHHHHHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcC
Confidence 5799999999999999988854 35555554433211 236677888888875
No 55
>PRK00768 nadE NAD synthetase; Reviewed
Probab=97.15 E-value=0.005 Score=59.87 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=38.2
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCC------ceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSY------EIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~------~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
-.-+-+-||||+||+++++++.+...... .++.+.+.-+.....+...|+.+++.++
T Consensus 38 ~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lg 100 (268)
T PRK00768 38 LKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQ 100 (268)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcC
Confidence 34566889999999999998876643111 1335555444322346788899999886
No 56
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=97.14 E-value=0.0026 Score=62.73 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=37.7
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
+.+++|||+||+++++++.+..+ .++.++++...-....|...++..++.++
T Consensus 2 VlVa~SGGVDSsvla~ll~~~lG--~~v~aV~vd~g~~~~~E~~~~~~~~~~~g 53 (295)
T cd01997 2 VILALSGGVDSTVAAVLLHKAIG--DRLTCVFVDNGLLRKNEAERVEELFSKLL 53 (295)
T ss_pred EEEEEcCChHHHHHHHHHHHHhC--CcEEEEEecCCCCChHHHHHHHHHHHHhC
Confidence 67899999999999999988642 35777777654222346677777777654
No 57
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.0063 Score=59.38 Aligned_cols=56 Identities=25% Similarity=0.251 Sum_probs=39.3
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecC--CCCCccHHHHHHHHHHHh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFD--GQFAPDRISAKAGLKELR 169 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~--~~~~~d~~~A~~~a~~l~ 169 (400)
+..+.|++|||.||++++.++.+.... ..+.+++|... +....+....+..++.++
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~-~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~ 78 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR-IEVEAVHVDHGLRGYSDQEAELVEKLCEKLG 78 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC-ceEEEEEecCCCCCccchHHHHHHHHHHHhC
Confidence 468999999999999999999887632 35667776543 222344556667777664
No 58
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.08 E-value=0.00036 Score=74.31 Aligned_cols=78 Identities=24% Similarity=0.173 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhccCccchhhhcCCCcccCCCCCHHHHHHHhcCChhhhhccCCCCCCCchHHHHHHHHhcCchhhhcCCC
Q 015804 281 MKLDMQRIWKRNLGRDDRCCADNGKEARFPFLDEDVIRTLLDIPLWEIANLDQPSGTGDKKILREVAKMLGLYEAATLPK 360 (400)
Q Consensus 281 l~~dl~~~~~~~L~r~Dr~sma~gvE~R~PFLD~~vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~~lP~~i~~R~K 360 (400)
+..++..++...+.+. + +|++++|.|+||+|. ++++.+||.+.|. .. + .+|+++|.+.+..+|+.+..|+|
T Consensus 403 ~~l~l~~~~~~~i~~~-~-~m~~~le~Rvpf~~~--~~l~~~i~~~~K~-~~---~-~gk~~lr~~~~~~~p~~~~~r~k 473 (542)
T COG0367 403 VDLALKIPPEHKLNRD-R-SMAKKLERRVPFSDG--VELPEEIPWREKI-AF---G-YGKGILRIAYEKILPDFILSRKK 473 (542)
T ss_pred HHHHhcCCcccccchh-h-hhhhhhheecccccc--hhhHhhCChhhhh-hc---C-CcchhhHhhhhccCcHHHhcccc
Confidence 3444444444455444 8 999999999999999 9999999999874 22 3 58999999999999999999999
Q ss_pred CcccCCc
Q 015804 361 RAIQFGS 367 (400)
Q Consensus 361 ~g~q~gs 367 (400)
.++..+-
T Consensus 474 ~~~~~~~ 480 (542)
T COG0367 474 LGFPKPL 480 (542)
T ss_pred cCCCccc
Confidence 9886653
No 59
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=97.06 E-value=0.004 Score=56.32 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=38.1
Q ss_pred eEEEecCCcchHHHHHHHHhhcCC-CCceeEEEeecCCCCC--ccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDP-SYEIDLLNVSFDGQFA--PDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~-~~~i~~ftvgf~~~~~--~d~~~A~~~a~~l~ 169 (400)
+.+.+|||.||++++.++.+.... +.++.++++.+.-... .+...+...++.++
T Consensus 2 v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~ 58 (185)
T cd01992 2 ILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLG 58 (185)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcC
Confidence 689999999999999999776420 1258888877543222 35667777777764
No 60
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=96.99 E-value=0.0054 Score=62.18 Aligned_cols=52 Identities=25% Similarity=0.219 Sum_probs=39.2
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
....|.+.+|||+||+++++++++.. ..+.++++... ..|...|+.+|++++
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~~G---~eV~av~~~~~---~~e~~~a~~va~~LG 55 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQEQG---YEIVGVTMRVW---GDEPQDARELAARMG 55 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHcC---CcEEEEEecCc---chhHHHHHHHHHHhC
Confidence 44589999999999999999888753 45777766532 235567888999886
No 61
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=96.97 E-value=0.0045 Score=62.60 Aligned_cols=52 Identities=33% Similarity=0.273 Sum_probs=38.5
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeec-CC---------CCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSF-DG---------QFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf-~~---------~~~~d~~~A~~~a~~l~ 169 (400)
.|.+++|||+||+++++++.+.. ..+.++++.. +. ....|...|+.+|++++
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G---~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lg 63 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG---YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLG 63 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC---CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcC
Confidence 47899999999999999998864 4688888742 10 01236678889999885
No 62
>PRK05370 argininosuccinate synthase; Validated
Probab=96.92 E-value=0.0071 Score=62.32 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=42.7
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRG 170 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~ 170 (400)
....|++++|||||||.++..+++. +..+.||++.-.++...|....++-|..++.
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~---~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA 65 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK---GAVPYAYTANLGQPDEDDYDAIPRRAMEYGA 65 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc---CCeEEEEEEECCCCCccchHHHHHHHHHhCC
Confidence 5568999999999999998877665 2579999988654223577777777778873
No 63
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=96.86 E-value=0.0024 Score=64.53 Aligned_cols=52 Identities=31% Similarity=0.281 Sum_probs=37.1
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCC-C--------CccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQ-F--------APDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~-~--------~~d~~~A~~~a~~l~ 169 (400)
.|.|.+|||+|||+-|+|+++.+ ..+..+++.+-+. . ..|...|+.+|++|+
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G---~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~Lg 62 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQG---YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLG 62 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT----EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEccCCHHHHHHHHHHHhhc---ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcC
Confidence 47899999999999999999874 5787777664322 1 135778999999996
No 64
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0027 Score=63.78 Aligned_cols=54 Identities=33% Similarity=0.272 Sum_probs=41.1
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEee--cC-CC----CCccHHHHHHHHHHHh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVS--FD-GQ----FAPDRISAKAGLKELR 169 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvg--f~-~~----~~~d~~~A~~~a~~l~ 169 (400)
...|.|.+|||+|||+.|+++.++. +.+..++.- ++ +. ...|...|+.+|++|+
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QG---yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LG 63 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQG---YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLG 63 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcC---CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhC
Confidence 4468899999999999999999875 567666644 31 11 2357788999999997
No 65
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=96.81 E-value=0.0073 Score=63.56 Aligned_cols=114 Identities=15% Similarity=0.184 Sum_probs=63.3
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCC--ccHHHHHHHHHHHhhcCCcccceEEEecCCcchhcc
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFA--PDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTS 191 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~--~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~ 191 (400)
..+.++||||+||++.++++.+.+ ..+.++++.+..... .+...++..+++++..+ +.+++.++ ..++.
T Consensus 178 gk~lvllSGGiDS~va~~~~~krG---~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~---~~~l~~v~--~~~~~- 248 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMRRG---SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSH---RVRFISVD--FEPVV- 248 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHHcC---CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccC---CceEEEEe--cHHHH-
Confidence 355788999999999999887764 468888776543211 13556777776665322 23355554 22222
Q ss_pred chHHHHhhcccCCCcccchhHHHHHHHhcCCCcccccccCCCchhhHHHHhhcCceEEEeccccccc
Q 015804 192 ETKHVMSLINPANTYMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQRVKYISKSRIILVGSGADEQ 258 (400)
Q Consensus 192 ~~~~i~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDEl 258 (400)
..+..-.. ........---++.++ ..+|.+.|++.+.||+-.|.+
T Consensus 249 --~~i~~~~~--~~~~~~v~rR~ml~iA------------------~~~A~~~ga~~IvtG~~l~dv 293 (482)
T PRK01269 249 --GEILEKVD--DGQMGVVLKRMMLRAA------------------SKVAERYGIQALVTGEALGQV 293 (482)
T ss_pred --HHHHhcCC--CceecHHHHHHHHHHH------------------HHHHHHcCCCEEEECcChHhh
Confidence 12221111 1111101111111112 245678899999999988876
No 66
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=96.75 E-value=0.0044 Score=54.47 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=37.6
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
++.+.+|||.||++++.++.+......++..+++...-+......+++..+++++
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g 55 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYG 55 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 3689999999999999999887531015666666543322223557778888775
No 67
>PRK00074 guaA GMP synthase; Reviewed
Probab=96.74 E-value=0.007 Score=64.17 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=38.6
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHH-HHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKA-GLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~-~a~~l~ 169 (400)
.+..+.+++|||+||+++++++.+..+ .++.++++...-....|...+.+ .+++++
T Consensus 214 ~~~~vlva~SGGvDS~vll~ll~~~lg--~~v~av~vd~g~~~~~e~~~~~~~~a~~lg 270 (511)
T PRK00074 214 GDKKVILGLSGGVDSSVAAVLLHKAIG--DQLTCVFVDHGLLRKNEAEQVMEMFREHFG 270 (511)
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHhC--CceEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 457899999999999999999987642 35777777643212235555554 556664
No 68
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=96.71 E-value=0.005 Score=62.78 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=35.9
Q ss_pred EEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhh
Q 015804 118 VLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRG 170 (400)
Q Consensus 118 v~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~ 170 (400)
+++|||||||.+...+.+.. +..+.+|++...+. ..|....++-|..+|.
T Consensus 2 LAySGGLDTS~~l~~L~e~~--~~~Via~~aDlGq~-~~d~~~i~~kA~~~Ga 51 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEG--GYEVIAVTADLGQP-DEDLEAIEEKALKLGA 51 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTT--TEEEEEEEEESSST--S-HHHHHHHHHHHT-
T ss_pred eeeCCChHHHHHHHHHHhhc--CceEEEEEEECCCc-HHHHHHHHHHHHhcCC
Confidence 57999999999988887765 25799999987543 3578788888888874
No 69
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0044 Score=55.32 Aligned_cols=50 Identities=36% Similarity=0.455 Sum_probs=41.2
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.|++++|||=|||+-|.++.+++ ..+...|+.|.- .+...+|+..|+.|+
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klg---yev~LVTvnFGv--~d~~k~A~~tA~~lg 51 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLG---YEVELVTVNFGV--LDSWKYARETAAILG 51 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhC---CCcEEEEEEecc--ccchhhHHHHHHHhC
Confidence 47899999999999988888874 568888888853 356788999999886
No 70
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.52 E-value=0.014 Score=53.13 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=32.7
Q ss_pred eEEEecCCcchHHHHHHHHhhcCC-CCceeEEEeecCCCC--CccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDP-SYEIDLLNVSFDGQF--APDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~-~~~i~~ftvgf~~~~--~~d~~~A~~~a~~l~ 169 (400)
|.|.+|||.||++++.++.+.... +.++.+++|...-.. ..+....+..++.++
T Consensus 2 i~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~ 58 (182)
T PF01171_consen 2 ILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLG 58 (182)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcC
Confidence 689999999999999988877531 235777777643221 123445555565553
No 71
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.43 E-value=0.067 Score=53.00 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=38.6
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCC-CCceeEEEeecCCCCCcc-HHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDP-SYEIDLLNVSFDGQFAPD-RISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~-~~~i~~ftvgf~~~~~~d-~~~A~~~a~~l~ 169 (400)
.+.+++|||.||++++.++.+...+ ..++..+++...- ..++ ..+...+++.++
T Consensus 29 ~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~-~FpEt~ef~d~~a~~~g 84 (301)
T PRK05253 29 NPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGW-KFPEMIEFRDRRAKELG 84 (301)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCC-CCHHHHHHHHHHHHHhC
Confidence 5689999999999999999887542 2357777776432 2344 356777887775
No 72
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=96.42 E-value=0.046 Score=51.11 Aligned_cols=50 Identities=30% Similarity=0.385 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhh
Q 015804 82 RVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNEC 136 (400)
Q Consensus 82 ~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~ 136 (400)
++.+.|.+.+..||.----|+ |....+..++|++|||.|||+.+-++...
T Consensus 34 e~~~rl~e~l~~RL~g~~ef~-----r~~id~~kiaVA~SGG~DSsas~iilR~~ 83 (255)
T COG1365 34 EVYERLRELLKKRLEGEKEFE-----RIKIDKPKIAVAYSGGVDSSASAIILRWA 83 (255)
T ss_pred HHHHHHHHHHHHHhcCchhcc-----cCCCCCceEEEEecCCcchHHHHHHHHhh
Confidence 456777888888873000011 11122367999999999999988877664
No 73
>PRK02628 nadE NAD synthetase; Reviewed
Probab=96.33 E-value=0.033 Score=61.08 Aligned_cols=75 Identities=23% Similarity=0.219 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhc---C-CCCceeEEEeecCCCCC
Q 015804 80 VQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECL---D-PSYEIDLLNVSFDGQFA 155 (400)
Q Consensus 80 ~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~---~-~~~~i~~ftvgf~~~~~ 155 (400)
.+++.+.+...++.++.. .....+.+.||||+||+++++++.+.. + ....+.++++ ++..+
T Consensus 341 ~~~~~~~~v~~l~~~~~~-------------~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m--p~~~s 405 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRA-------------TGLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM--PGFAT 405 (679)
T ss_pred HHHHHHHHHHHHHHHHHH-------------cCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC--CCCCC
Confidence 467777888888888731 135678899999999999888887762 1 1134655555 44333
Q ss_pred --ccHHHHHHHHHHHh
Q 015804 156 --PDRISAKAGLKELR 169 (400)
Q Consensus 156 --~d~~~A~~~a~~l~ 169 (400)
.+...|+..|+.++
T Consensus 406 s~~s~~~a~~la~~LG 421 (679)
T PRK02628 406 TDRTKNNAVALMKALG 421 (679)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 34568999999986
No 74
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=96.33 E-value=0.021 Score=53.80 Aligned_cols=49 Identities=24% Similarity=0.203 Sum_probs=34.1
Q ss_pred EEecCCcchHHHHHHHHhhcCCCCcee-EEEeecCC-----CCCccHHHHHHHHHHHh
Q 015804 118 VLFSGGLDSMILAALLNECLDPSYEID-LLNVSFDG-----QFAPDRISAKAGLKELR 169 (400)
Q Consensus 118 v~LSGGLDSs~Iaala~~~~~~~~~i~-~ftvgf~~-----~~~~d~~~A~~~a~~l~ 169 (400)
+++|||+||++.+.++.+.. ..+. ++|+...+ ....+...++..|+.++
T Consensus 2 vl~SGGkDS~~al~~a~~~G---~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lg 56 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG---HEVRCLITVVPENEESYMFHTPNIELTRLQAEALG 56 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC---CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhC
Confidence 78999999999999888753 3453 44543221 12346778888898885
No 75
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.022 Score=57.47 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=43.4
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRG 170 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~ 170 (400)
-..|.+++|||||+|++...+.+... ..+-|||+.-.++ .+|...+++-|..++.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~~--~eVia~tadvGQ~-eed~~~i~eKA~~~Ga 58 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKGG--AEVIAVTADVGQP-EEDLDAIREKALELGA 58 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhcC--ceEEEEEEeCCCC-hHHhHHHHHHHHHhCC
Confidence 34688999999999998888877652 5788999876543 4688888888888874
No 76
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=95.99 E-value=0.03 Score=58.30 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=44.7
Q ss_pred cCCCceEEEecCCcchHHHHHHHHhhc--CCCCceeEEEeecCCCC-C-ccHHHHHHHHHHHhhcCCcccceEEEec
Q 015804 111 EEIAPVAVLFSGGLDSMILAALLNECL--DPSYEIDLLNVSFDGQF-A-PDRISAKAGLKELRGIAPLRRWKLVEID 183 (400)
Q Consensus 111 ~sd~pvgv~LSGGLDSs~Iaala~~~~--~~~~~i~~ftvgf~~~~-~-~d~~~A~~~a~~l~~~~~~~~~~l~~i~ 183 (400)
....++.+.+|||.||++++.++.+.. ..+.++.+++|.+.-.. + .+..+++..|+.++ +++.+..++
T Consensus 13 ~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~-----i~~~~~~~~ 84 (436)
T PRK10660 13 LTSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQ-----VPLVVERVQ 84 (436)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcC-----CcEEEEEEe
Confidence 356789999999999999998887542 11346777887764322 2 22456677777774 445555554
No 77
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=95.69 E-value=0.053 Score=59.72 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhhhcccccC-CCceEEEecCCcchHHHHHHH
Q 015804 81 QRVLNALRKSVMQRSSLHTIFQAVICGRRQEE-IAPVAVLFSGGLDSMILAALL 133 (400)
Q Consensus 81 ~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~s-d~pvgv~LSGGLDSs~Iaala 133 (400)
+++...+...++.++. ++ -.-+-+-||||+||+++|+++
T Consensus 329 ~ei~~~~~~~L~d~l~--------------~~g~~g~vlglSGGiDSa~~a~lv 368 (700)
T PLN02339 329 EEIALGPACWLWDYLR--------------RSGASGFLLPLSGGADSSSVAAIV 368 (700)
T ss_pred HHHHHHHHHHHHHHHH--------------HhCCCeEEEEccCCHHHHHHHHHH
Confidence 5777777788888873 23 345667799999999988885
No 78
>PRK08576 hypothetical protein; Provisional
Probab=95.16 E-value=0.07 Score=55.47 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=37.2
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
++.+.+|||.||++++.++.+... ++.++++...-.......+++..++.++
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~---~V~aV~iDTG~e~pet~e~~~~lae~LG 287 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG---DVTAVYVDTGYEMPLTDEYVEKVAEKLG 287 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC---CCEEEEeCCCCCChHHHHHHHHHHHHcC
Confidence 799999999999999998888753 3667766532221123557777887775
No 79
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=94.89 E-value=0.15 Score=49.66 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=37.1
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCC---CCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDP---SYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~---~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.-+-+-+|||+||+++++++.+...+ ...+.++..-+..-...|...|...++.++
T Consensus 26 k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~lg 84 (268)
T COG0171 26 KGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALG 84 (268)
T ss_pred CCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHHHHhC
Confidence 34556799999999999999887742 112444443332102357778888888886
No 80
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.076 Score=51.56 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.9
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEee
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVS 149 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvg 149 (400)
.+..+-+.||||+|||..+.|+.+..+ ..+.|.-+.
T Consensus 20 g~~kvi~alSGGVDSsv~a~L~~~AiG--d~l~cvfVD 55 (315)
T COG0519 20 GDGKVILALSGGVDSSVAAVLAHRAIG--DQLTCVFVD 55 (315)
T ss_pred CCceEEEEecCCCcHHHHHHHHHHHhh--cceEEEEec
Confidence 677889999999999999999988874 356655444
No 81
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=94.32 E-value=0.49 Score=48.30 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=22.5
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEe
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNV 148 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftv 148 (400)
++-++||||+||-.-+.++-+.+ -++...++
T Consensus 177 k~l~LlSGGIDSPVA~~l~mkRG---~~v~~v~f 207 (383)
T COG0301 177 KVLLLLSGGIDSPVAAWLMMKRG---VEVIPVHF 207 (383)
T ss_pred cEEEEEeCCCChHHHHHHHHhcC---CEEEEEEE
Confidence 34478999999999888887754 35655554
No 82
>PRK13795 hypothetical protein; Provisional
Probab=94.27 E-value=0.23 Score=54.24 Aligned_cols=53 Identities=28% Similarity=0.360 Sum_probs=36.9
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCcc-HHHHHHHHHHHh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPD-RISAKAGLKELR 169 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d-~~~A~~~a~~l~ 169 (400)
+.++.+.+|||.||++++.++.+... ++..+.+...-+ .++ ..+++..+++++
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~~---~~~vvfiDTg~e-fpet~e~v~~~~~~~g 296 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREALK---DFKAFFNNTGLE-FPETVENVKEVAEEYG 296 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhCC---CcEEEEEeCCCC-CHHHHHHHHHHHHHcC
Confidence 45899999999999999999988753 355665543212 233 456777777664
No 83
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.16 E-value=0.13 Score=50.73 Aligned_cols=62 Identities=27% Similarity=0.247 Sum_probs=43.0
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEE-eecCC--------CCCccHHHHHHHHHHHhhcCCcccceEEEec
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLN-VSFDG--------QFAPDRISAKAGLKELRGIAPLRRWKLVEID 183 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ft-vgf~~--------~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~ 183 (400)
-..|.|.+|||+|||.-|.|+++.+. .+..+- ..+++ +...|...|+.++++|. +++..++
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~~~g~---~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~Ln-------I~~~~Vn 74 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLLAARGY---NVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLN-------IPLHQVN 74 (377)
T ss_pred cceEEEEecCCchHHHHHHHHHhcCC---CeeEEeeeccccccccccCCCchhhHHHHHHHHHHhC-------CeeEEEe
Confidence 34688999999999999998887653 343332 22221 12468889999999985 4566666
Q ss_pred C
Q 015804 184 S 184 (400)
Q Consensus 184 ~ 184 (400)
.
T Consensus 75 f 75 (377)
T KOG2805|consen 75 F 75 (377)
T ss_pred e
Confidence 4
No 84
>PRK08557 hypothetical protein; Provisional
Probab=93.70 E-value=0.28 Score=50.83 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=37.2
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCcc-HHHHHHHHHHHh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPD-RISAKAGLKELR 169 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d-~~~A~~~a~~l~ 169 (400)
..++.+.+|||-||++++.++.+... ++..+++... -..++ ..+...++++++
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~~~---~i~vvfvDTG-~efpET~e~ve~v~~~yg 234 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEVIP---DLEVIFIDTG-LEYPETINYVKDFAKKYD 234 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHhCC---CCEEEEEECC-CCCHHHHHHHHHHHHHhC
Confidence 45789999999999999998887642 4666766542 22344 346677777764
No 85
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=93.61 E-value=1.1 Score=44.19 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=36.7
Q ss_pred EEEecCCcchHHHHHHHHhhcCC-CCceeEEEeecCCCCCccH-HHHHHHHHHHh
Q 015804 117 AVLFSGGLDSMILAALLNECLDP-SYEIDLLNVSFDGQFAPDR-ISAKAGLKELR 169 (400)
Q Consensus 117 gv~LSGGLDSs~Iaala~~~~~~-~~~i~~ftvgf~~~~~~d~-~~A~~~a~~l~ 169 (400)
.+++|||-||++++.|+.+...+ ..++..+++...- .++|. .+...+++.++
T Consensus 23 vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~-~F~Et~efrd~~a~~~g 76 (294)
T TIGR02039 23 VMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGW-KFREMIAFRDHMVAKYG 76 (294)
T ss_pred EEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCC-CCHHHHHHHHHHHHHhC
Confidence 68899999999999999888532 2367788776432 24554 35566777775
No 86
>PRK13794 hypothetical protein; Provisional
Probab=93.44 E-value=0.41 Score=50.47 Aligned_cols=54 Identities=24% Similarity=0.236 Sum_probs=36.4
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCcc-HHHHHHHHHHHh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPD-RISAKAGLKELR 169 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d-~~~A~~~a~~l~ 169 (400)
..++.+.+|||-||++++.++.+... .++.++.+...-+ .++ ..+...++++++
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~--~~~~vvfiDTG~e-fpet~e~i~~~~~~~g 301 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALG--INFPVLFNDTGLE-FPETLENVEDVEKHYG 301 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhC--CCeEEEEEECCCC-ChHHHHHHHHHHHhcC
Confidence 45899999999999999999877642 3566666553322 334 345666666653
No 87
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=93.32 E-value=0.25 Score=48.58 Aligned_cols=52 Identities=25% Similarity=0.264 Sum_probs=39.5
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHhh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELRG 170 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~~ 170 (400)
..+-.+.|||||+|.|.+-+.+++ ..+-+|...... -.|...|++-|-.++.
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqG---yeViay~AnvGQ--~edfe~ar~kAlk~Ga 57 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQG---YEVIAYLANVGQ--KEDFEEARKKALKSGA 57 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcC---ceEEEeeccccc--hhhHHHHHHhhhhcCc
Confidence 445678999999999988888754 688898866533 3578888888777763
No 88
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=93.18 E-value=0.37 Score=46.02 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=36.7
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCcc-HHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPD-RISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d-~~~A~~~a~~l~ 169 (400)
.+.+.+|||-||++++.++.+.. .++..+.+...- ..+| ..++...+++++
T Consensus 42 ~i~vs~SGGKDS~vlL~L~~~~~---~~i~vvfiDTG~-~~pet~e~~~~~~~~~g 93 (241)
T PRK02090 42 RLALVSSFGAEDAVLLHLVAQVD---PDIPVIFLDTGY-LFPETYRFIDELTERLL 93 (241)
T ss_pred CEEEEecCCHHHHHHHHHHHhcC---CCCcEEEecCCC-CCHHHHHHHHHHHHHhC
Confidence 48999999999999999998864 357777665332 2444 346667777764
No 89
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=90.63 E-value=0.22 Score=47.83 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=32.7
Q ss_pred hhcccC-CEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 10 FVGELR-KHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 10 ~~~~~~-~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
+++... +.++||||.++|...+ ++.+++|||||+++++.++
T Consensus 181 ~~~~~~~~~~~vASE~~al~~~~------------------~~~~~~l~pg~~~~i~~~~ 222 (252)
T cd00715 181 VLGKLEGDGYVVASESCALDIIG------------------AEFVRDVEPGEIVVIDDDG 222 (252)
T ss_pred EEEEeCCCeEEEEECHHHhcccC------------------CcEEEEcCCCeEEEEECCc
Confidence 445555 8899999999998643 3468899999999998766
No 90
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=90.63 E-value=0.4 Score=42.38 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=30.9
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccH-HHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDR-ISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~-~~A~~~a~~l~ 169 (400)
+.+.+|||-||++++.++.+... ++..+.+... ...++. .+.+.+.++++
T Consensus 2 i~vs~SGGKDS~v~l~l~~~~~~---~~~vv~~dtg-~e~p~t~~~~~~~~~~~~ 52 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLAREAGR---KVPVVFIDTG-YEFPETYEFVDELAKRYG 52 (174)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHT---TCEEEEEE-S-TB-HHHHHHHHHHHHHTT
T ss_pred eEEEecCCHHHHHHHHHHHHhcC---CCcEEEEecC-ccCHHHHHHHHHHHhhhh
Confidence 57899999999999999988874 3444444332 224453 46666766663
No 91
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=89.06 E-value=0.47 Score=37.23 Aligned_cols=33 Identities=36% Similarity=0.369 Sum_probs=23.1
Q ss_pred EEEecCCcchHHHHHHHHhhcCCCCceeEEEee
Q 015804 117 AVLFSGGLDSMILAALLNECLDPSYEIDLLNVS 149 (400)
Q Consensus 117 gv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvg 149 (400)
.+.+|||.||+.++.++.+.......+..++++
T Consensus 2 lv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~ 34 (86)
T cd01984 2 LVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV 34 (86)
T ss_pred EEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH
Confidence 578999999999999988763212245555544
No 92
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=88.59 E-value=2.6 Score=42.03 Aligned_cols=53 Identities=25% Similarity=0.220 Sum_probs=37.3
Q ss_pred eEEEecCCcchHHHHHHHHhhcCC-CCceeEEEeecCCCCCccH-HHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDP-SYEIDLLNVSFDGQFAPDR-ISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~-~~~i~~ftvgf~~~~~~d~-~~A~~~a~~l~ 169 (400)
+.+++|||-||++++.|+.+...+ ..++..+++... -..+|. .+...+++.++
T Consensus 40 ~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG-~~FpEt~efrD~~a~~~g 94 (312)
T PRK12563 40 PVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT-WKFREMIDFRDRRAKELG 94 (312)
T ss_pred cEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC-CCCHHHHHHHHHHHHHhC
Confidence 579999999999999999887431 235777877642 234553 45667777775
No 93
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=86.99 E-value=1.1 Score=41.61 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=36.1
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccH-HHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDR-ISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~-~~A~~~a~~l~ 169 (400)
..+.+.+|||-||++++-|+.+... ++..+.+... ...+|. .+...+.++++
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~~---~~~v~f~DTg-~efpeT~efv~~~~~~~~ 66 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKISP---DIPVIFLDTG-YHFPETYELIDELTERYP 66 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcCC---CCcEEEecCC-CCCHHHHHHHHHHHHHhC
Confidence 3689999999999999999988753 4666655533 234554 35556666654
No 94
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=85.55 E-value=2.3 Score=42.73 Aligned_cols=43 Identities=30% Similarity=0.493 Sum_probs=32.0
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCC--CCceeEEEeecCCCC
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDP--SYEIDLLNVSFDGQF 154 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~--~~~i~~ftvgf~~~~ 154 (400)
.-..|+|.||||=||++..-|+.+.... ..+|..+-+.++++.
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QY 70 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQY 70 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhh
Confidence 4456899999999999988877554431 236888888888754
No 95
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=84.11 E-value=4.4 Score=38.39 Aligned_cols=51 Identities=27% Similarity=0.276 Sum_probs=32.8
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCC-----CCccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQ-----FAPDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~-----~~~d~~~A~~~a~~l~ 169 (400)
+.+++|||-||+.-+..+.+.. ..+..+|+--++. ...+...++..|+.++
T Consensus 3 v~vl~SGGKDS~lAl~~~~~~~---~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~alg 58 (222)
T TIGR00289 3 VAVLYSGGKDSILALYKALEEH---EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVG 58 (222)
T ss_pred EEEEecCcHHHHHHHHHHHHcC---eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcC
Confidence 6789999999999777665542 2344444433221 1346667788888875
No 96
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=83.95 E-value=0.98 Score=47.58 Aligned_cols=82 Identities=12% Similarity=-0.020 Sum_probs=58.4
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc------------------C
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI------------------P 71 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~------------------~ 71 (400)
+.|..++.++||||.+||..+.. +.|+.|+||+.++++.++.. |
T Consensus 199 ~~G~~~~~~~~ASE~~Al~~~~~------------------~~i~~l~PGeiv~i~~~g~~~~~~~~~~~~~~C~fE~iY 260 (474)
T PRK06388 199 VLGKNFDGYIIASESCAIDALSG------------------TTIKNVEPGEVVEVFDNGYKTIFKLDGDKVAHCMFEYVY 260 (474)
T ss_pred EEEecCCEEEEEEChHHHHhccC------------------cEEEEeCCCEEEEEECCceEEEEecCCCccccceEEEEe
Confidence 56777888999999999998643 24888999999999876621 1
Q ss_pred --CCCC--hhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecC
Q 015804 72 --ASVP--CSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSG 122 (400)
Q Consensus 72 --~~~~--~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSG 122 (400)
.+.+ ....+.+.|..+-+....... ...|.-++|-+||
T Consensus 261 farpds~~~g~~vy~~R~~~G~~La~~~~-------------~~~D~VvpVP~s~ 302 (474)
T PRK06388 261 FSRPDSIIDGINVYQARVRMGMRLAKESP-------------VEADVVVPVPDSG 302 (474)
T ss_pred ecCCccccCCcHHHHHHHHHHHHHHhhcc-------------CCCcEEEeeCCCc
Confidence 1111 234677777777777776652 1456678888997
No 97
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=83.54 E-value=1.1 Score=47.21 Aligned_cols=41 Identities=17% Similarity=0.076 Sum_probs=34.0
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
+.|..++.++||||.++|..++. +.++.|+||+.++++.++
T Consensus 196 ~~g~~~~~~~vASE~~al~~~g~------------------~~~r~v~pGeiv~i~~~g 236 (469)
T PRK05793 196 CLGKLGDDYILSSESCALDTIGA------------------EFIRDVEPGEIVIIDEDG 236 (469)
T ss_pred EEEEECCEEEEEEChHHHhhcCc------------------ceEEEeCCCeEEEEECCc
Confidence 56777889999999999997543 347789999999998776
No 98
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=83.36 E-value=1 Score=47.71 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=29.4
Q ss_pred CEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 16 KHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 16 ~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
+.++||||.+||..+.. +-|+.|+||+.++++.++
T Consensus 201 ~~~~~ASE~~Al~~~g~------------------~~ir~v~PGeiv~i~~~g 235 (501)
T PRK09246 201 TEYMVASESVALDALGF------------------EFVRDVAPGEAIYITEDG 235 (501)
T ss_pred CEEEEEECHHHHHhCCc------------------eEEEEeCCCeEEEEECCC
Confidence 47999999999997542 358899999999998766
No 99
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=83.18 E-value=5.9 Score=41.20 Aligned_cols=37 Identities=38% Similarity=0.503 Sum_probs=29.4
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEee
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVS 149 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvg 149 (400)
.+..|-+++|||+|||..++|..+...+ ..+++..+.
T Consensus 229 G~~~Vl~~vSGgvdStV~a~Ll~~alg~-~R~~ai~vd 265 (552)
T KOG1622|consen 229 GDYKVLVAVSGGVDSTVCAALLRRALGP-DRVHAIHVD 265 (552)
T ss_pred cccceEEEecCCchHHHHHHHHHHhhCC-CceEEEEec
Confidence 5778889999999999999999888752 456666554
No 100
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=83.08 E-value=1.1 Score=47.20 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=46.7
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc------------------C
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI------------------P 71 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~------------------~ 71 (400)
+.|..++.++||||.+||..+.. +-|+.|+||++++++.++.. |
T Consensus 191 ~~G~~~~~~~~ASE~~Al~~~g~------------------~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~~~C~fE~iY 252 (475)
T PRK07631 191 SIGRLGDAYVVASETCAFDVIGA------------------TYEREVEPGELLIINDEGMRSERFAPNQNRSICSMEYIY 252 (475)
T ss_pred EEEEeCCEEEEEeChHHHhhcCc------------------ceEEEcCCCeEEEEECCcEEEEecCCCCCcccceEEEEE
Confidence 45677788999999999976542 23777999999999877611 1
Q ss_pred CCCC----hhHHHHHHHHHHHHHHHHHh
Q 015804 72 ASVP----CSMSVQRVLNALRKSVMQRS 95 (400)
Q Consensus 72 ~~~~----~~e~~~~l~~~L~~AV~~rl 95 (400)
-.++ ....+.+.|..+-+..++..
T Consensus 253 farpdS~~~g~~vy~~R~~~G~~La~~~ 280 (475)
T PRK07631 253 FARPDSNVDGINVHTARKNLGKRLALEA 280 (475)
T ss_pred eecCCcccCCeEHHHHHHHHHHHHHhhC
Confidence 1111 23456677777777777664
No 101
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=82.19 E-value=2.8 Score=44.55 Aligned_cols=76 Identities=12% Similarity=-0.082 Sum_probs=51.0
Q ss_pred CCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc------------------C--CCC
Q 015804 15 RKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI------------------P--ASV 74 (400)
Q Consensus 15 ~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~------------------~--~~~ 74 (400)
++.++||||.+||..+.. +.|+.|+||+.++++.++.. | .+.
T Consensus 225 ~~~~~~ASE~~Al~~lg~------------------~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~~~C~fE~vYfarpd 286 (500)
T PRK07349 225 PGRYVLASETCALDIIGA------------------EYLRDVEPGELVWITEGGLSSFHWAQEPQRKLCIFEMIYFARPD 286 (500)
T ss_pred CCeEEEEeccchhhhcCC------------------ceEEEeCCCeEEEEECCceEEEecccCCCcceeEEEeeeccCCC
Confidence 357999999999976542 34788999999999877611 1 111
Q ss_pred C--hhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEec
Q 015804 75 P--CSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFS 121 (400)
Q Consensus 75 ~--~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LS 121 (400)
+ ....+.+.|..+-+...+... ...|+-+++-.|
T Consensus 287 S~~~g~~V~~~R~~~G~~La~~~~-------------~~~DvVv~VP~s 322 (500)
T PRK07349 287 SRMHGESLYSYRQRLGQQLAKESP-------------VDADLVIGVPDS 322 (500)
T ss_pred CccCCeEHHHHHHHHHHHHhhhcc-------------cCCcEEEEeccc
Confidence 1 234566777777777766541 136777777777
No 102
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=81.64 E-value=1.2 Score=48.11 Aligned_cols=40 Identities=10% Similarity=0.229 Sum_probs=32.5
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
+.|.-+++++||||+++|+.++. .++.|+||+.++++.++
T Consensus 181 ~~g~~~~~~~~aSE~~al~~~~~-------------------~~~~l~pg~~~~i~~~~ 220 (604)
T PRK00331 181 VIGLGEGENFLASDALALLPYTR-------------------RVIYLEDGEIAVLTRDG 220 (604)
T ss_pred EEEEcCCeEEEEECHHHHHHhcC-------------------EEEEECCCeEEEEECCe
Confidence 45666789999999999998653 36789999999997655
No 103
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=81.62 E-value=1.4 Score=46.97 Aligned_cols=82 Identities=16% Similarity=0.039 Sum_probs=55.0
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc-----------------CC
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI-----------------PA 72 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~-----------------~~ 72 (400)
+.|..++.++||||.++|...+ .+.|+.|+||++++++.++.. |-
T Consensus 211 ~~g~~~~~~~vASE~~AL~~~g------------------~~~ir~v~PGeiv~I~~~gv~~~~~~~~~~~~C~fE~vYf 272 (510)
T PRK07847 211 VLGRLERGWVVASETAALDIVG------------------ASFVREIEPGELIAIDADGLRSTRFAEPTPKGCVFEYVYL 272 (510)
T ss_pred EEEEECCeEEEEechHHHhccC------------------CcEEEEECcCEEEEEECCceEEEeccCCCCCCCeEEEEEe
Confidence 4566778899999999998653 246889999999999877611 11
Q ss_pred CCC----hhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecC
Q 015804 73 SVP----CSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSG 122 (400)
Q Consensus 73 ~~~----~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSG 122 (400)
.++ ....+.+.|..+-+...+... ...|.-++|-.||
T Consensus 273 arpdS~~~g~~v~~~R~~~G~~La~~~~-------------~~~D~VvpVP~sG 313 (510)
T PRK07847 273 ARPDTTIAGRSVHAARVEIGRRLAREHP-------------VEADLVIPVPESG 313 (510)
T ss_pred cCCcceeCCeEHHHHHHHHHHHHHhhCC-------------CCCeEEEeccCch
Confidence 111 233566777777777776641 0355556677774
No 104
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=81.54 E-value=1.4 Score=45.99 Aligned_cols=81 Identities=16% Similarity=0.028 Sum_probs=52.5
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc-----------------C-
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI-----------------P- 71 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~-----------------~- 71 (400)
+.|. +++++||||.+||..+. +.|+.|+||++++++.++.. |
T Consensus 182 ~~G~-~~~~~~ASE~~Al~~~~-------------------~~v~~l~PGeiv~i~~~g~~~~~~~~~~~~~C~fe~iYf 241 (442)
T PRK08341 182 SYGE-GDGHYFASEDSALRMFV-------------------NEIRDVFPGEVFVVSEGEVESKVLAREKHHHCVFEYIYF 241 (442)
T ss_pred EEEE-CCEEEEEeCcHHHHhhC-------------------CeEEEeCCCEEEEEECCceEEEeeccCCCccceEEEEEe
Confidence 3455 56789999999997432 36889999999999987611 1
Q ss_pred -CCCC--hhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCC
Q 015804 72 -ASVP--CSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGG 123 (400)
Q Consensus 72 -~~~~--~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGG 123 (400)
.+.+ ....+...|..+-+....... ...|.-+++-+||-
T Consensus 242 arpds~~~g~~v~~~R~~~G~~La~~~~-------------~~~D~Vv~VPdsg~ 283 (442)
T PRK08341 242 ARPDSVIDGVSVYSARYRMGVELARESP-------------AEGDVVIAVPDSGR 283 (442)
T ss_pred cCCccccCCcCHHHHHHHHHHHhhcccC-------------CCCceEEEecCchH
Confidence 1111 122355666666666665542 13566677777777
No 105
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=81.26 E-value=1.3 Score=47.94 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=32.3
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
+.|.-+++++||||+++|+.+.. .+..|+||++++++.++
T Consensus 180 ~~~~~~~~~~~aSE~~al~~~~~-------------------~~~~l~pg~~~~~~~~~ 219 (607)
T TIGR01135 180 IVGLGDGENFVASDVTALLPVTR-------------------RVIYLEDGDIAILTRDG 219 (607)
T ss_pred EEEECCCeEEEEEChHHHHhhCC-------------------EEEEeCCCeEEEEECCe
Confidence 45666778999999999998642 36689999999998665
No 106
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=81.16 E-value=6.3 Score=41.25 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.3
Q ss_pred CCCceEEEecCCcchHHHHHHHHhh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNEC 136 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~ 136 (400)
.+.|..|.+|||=||++++.|+-+.
T Consensus 12 ~~~p~vV~fSGGKDSta~L~Lv~~A 36 (447)
T TIGR03183 12 DDIPWVVGYSGGKDSTAVLQLIWNA 36 (447)
T ss_pred cCCceEEEeCCCHHHHHHHHHHHHH
Confidence 5678999999999999999877554
No 107
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=80.96 E-value=3 Score=39.53 Aligned_cols=54 Identities=11% Similarity=0.009 Sum_probs=38.4
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCcc-HHHHHHHHHHHh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPD-RISAKAGLKELR 169 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d-~~~A~~~a~~l~ 169 (400)
...+.+..|||.||+++.-++++... .++..+.+...- ..+| ..++..++++++
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~--~~i~vv~vDTg~-~fpET~e~~d~~~~~~~ 79 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE--PMIPVIFIDTLY-HFPQTLTLKDELTKKYY 79 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC--CCCCEEEEeCCC-CCHHHHHHHHHHHHHhC
Confidence 34588999999999999999988762 257777766432 2445 346777777764
No 108
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=80.89 E-value=1.5 Score=46.10 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=47.6
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc------------------C
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI------------------P 71 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~------------------~ 71 (400)
+.|..++.++||||.++|..++. +-|+.|+||++++++.++.. |
T Consensus 191 ~~g~~~~~~~~ASE~~Al~~~g~------------------~~ir~v~pGeiv~i~~~g~~~~~~~~~~~~~~C~fE~vY 252 (471)
T PRK06781 191 SIGKMGDAYVVASETCAFDVVGA------------------TYIRDVEPGELLIINDEGIHVDRFTNEVDHAICSMEYIY 252 (471)
T ss_pred EEEEECCEEEEEECchHhhhcCC------------------cEEEEeCCCEEEEEECCceEEEecCcCcccccceEEEEE
Confidence 56777889999999999987553 23777999999999877611 1
Q ss_pred CCCCh----hHHHHHHHHHHHHHHHHHh
Q 015804 72 ASVPC----SMSVQRVLNALRKSVMQRS 95 (400)
Q Consensus 72 ~~~~~----~e~~~~l~~~L~~AV~~rl 95 (400)
-.++. ...+.+.|..+-+...+..
T Consensus 253 farpds~~~g~~vy~~R~~~G~~La~~~ 280 (471)
T PRK06781 253 FARPDSNIAGINVHAARKNMGKRLAAEA 280 (471)
T ss_pred ecCCCceeCCEEHHHHHHHHHHHHhhhC
Confidence 11122 2356677777777777665
No 109
>PRK06850 hypothetical protein; Provisional
Probab=79.69 E-value=11 Score=40.18 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.5
Q ss_pred CCCceEEEecCCcchHHHHHHHHhh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNEC 136 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~ 136 (400)
.+.|..|.+|||=||++++.|+-+.
T Consensus 33 ~~~P~vV~fSGGKDStavL~Lv~~A 57 (507)
T PRK06850 33 DNRPWVIGYSGGKDSTAVLQLVWNA 57 (507)
T ss_pred CCCCeEEeCCCCchHHHHHHHHHHH
Confidence 5779999999999999998877554
No 110
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=79.50 E-value=1.7 Score=41.15 Aligned_cols=35 Identities=9% Similarity=-0.165 Sum_probs=26.5
Q ss_pred CCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 15 RKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 15 ~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
++.++||||+|+|...=+ +.|..+||||+..- .++
T Consensus 160 dG~l~FASElkaL~~~c~------------------~~~~~FPpG~~~~s-~gg 194 (224)
T cd01910 160 DGSVVFSDDVELVKASCG------------------KSFAPFPKGCFFHS-EGG 194 (224)
T ss_pred CCEEEEEeCHHHhhhhhc------------------cEEEEECCCCEEeC-CCC
Confidence 678999999999986311 24778999998764 444
No 111
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=79.25 E-value=2 Score=45.43 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=47.5
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC-Cc------------------
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG-PI------------------ 70 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~-~~------------------ 70 (400)
++|..++.++||||.++|..+.. +.++.|+||+.++++.++ ..
T Consensus 202 ~~g~~~~~~~~ASE~~Al~~~g~------------------~~~r~v~pGeiv~i~~~g~~~~~~~~~~~~~~~C~FE~V 263 (479)
T PRK09123 202 VLGELDGSPILASETCALDIIGA------------------EFVRDVEPGELVVIDEDGSIESIKPFPPQPARFCIFEYV 263 (479)
T ss_pred EEEEECCEEEEEECchHHhccCC------------------ceEEEECCCeEEEEeCCCcEEEEEecCCCCCCCChhheE
Confidence 55777788999999999976442 247779999999998766 21
Q ss_pred CCCCC----hhHHHHHHHHHHHHHHHHHh
Q 015804 71 PASVP----CSMSVQRVLNALRKSVMQRS 95 (400)
Q Consensus 71 ~~~~~----~~e~~~~l~~~L~~AV~~rl 95 (400)
|-.++ ....+-++|..+.+..++..
T Consensus 264 YfarPdS~~~g~~vy~~R~~~g~~La~~~ 292 (479)
T PRK09123 264 YFARPDSVVGGRSVYEVRKNIGRELARES 292 (479)
T ss_pred EecCCCceECCeEHHHHHHHHHHHHHHhC
Confidence 00111 23456778888888887775
No 112
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=79.03 E-value=11 Score=36.41 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=36.9
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCcc-HHHHHHHHHHHh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPD-RISAKAGLKELR 169 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d-~~~A~~~a~~l~ 169 (400)
..|+.+..|||.||++++.++.+... ++..+.+... -..+| ..+...++++++
T Consensus 39 ~~~~~~~~S~Gkds~V~l~L~~k~~~---~~~vif~DTg-~~f~Et~~~~d~~~~~~~ 92 (261)
T COG0175 39 SNPVVVSFSGGKDSTVLLHLAAKAFP---DFPVIFLDTG-YHFPETYEFRDRLAEEYG 92 (261)
T ss_pred CCCeEEEecCchhHHHHHHHHHHhcC---CCcEEEEeCC-CcCHHHHHHHHHHHHHcC
Confidence 45689999999999999999998874 3555555432 22344 346667777764
No 113
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=78.21 E-value=2.1 Score=44.66 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=54.9
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc-----------------CC
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI-----------------PA 72 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~-----------------~~ 72 (400)
+.|...+.++||||.++|.... .+.|+.|+||+.++++.++.+ |-
T Consensus 182 ~~g~~~~~~~~ASE~~al~~~g------------------~~~~r~v~pGeiv~i~~~~~~~~~~~~~~~~~c~fe~vYf 243 (442)
T TIGR01134 182 VLGKRGDGYVVASESCALDILG------------------AEFIRDVEPGEAVVIDDGGLESRLFANTPRAPCIFEYVYF 243 (442)
T ss_pred EEEEeCCEEEEEeCchHhcccC------------------CcEEEEECCCeEEEEECCcEEEEeccCCCCcceEEEEEEe
Confidence 5677788999999999998543 235888999999999877611 11
Q ss_pred CCC----hhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecC
Q 015804 73 SVP----CSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSG 122 (400)
Q Consensus 73 ~~~----~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSG 122 (400)
.++ ....+-+.|..+-+...+... ...|.=++|-.||
T Consensus 244 arpds~~~g~~v~~~R~~~g~~La~~~~-------------~~~D~Vv~VP~sg 284 (442)
T TIGR01134 244 ARPDSVIDGISVYKARKRMGEKLARESP-------------VEADVVIPVPDSG 284 (442)
T ss_pred cCCcceECCeEHHHHHHHHHHHHHHhcC-------------CCCEEEEEccCCH
Confidence 111 233456677777777776652 1356566777774
No 114
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=76.75 E-value=2.1 Score=45.24 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=31.2
Q ss_pred hhcccCC-EEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 10 FVGELRK-HEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 10 ~~~~~~~-~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
++|..++ .++||||.+||..++. +.|+.|+||+.++++.++
T Consensus 192 ~~G~~~~~~~~~ASE~~Al~~ig~------------------~~ir~l~PGEiv~i~~~g 233 (484)
T PRK07272 192 SIGKMKNGAYVVASETCAFDVVGA------------------EWVRDVQPGEIVIIDDEG 233 (484)
T ss_pred EEEEecCCEEEEEECHHHHhccCC------------------ceEEEcCCCeEEEEECCc
Confidence 3455534 5899999999986542 237789999999999776
No 115
>PLN02440 amidophosphoribosyltransferase
Probab=73.66 E-value=3.4 Score=43.68 Aligned_cols=40 Identities=8% Similarity=-0.046 Sum_probs=31.6
Q ss_pred hccc-CCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 11 VGEL-RKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 11 ~~~~-~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
.|.. ++.++||||.++|..++. +.|+.|+||+.++++.++
T Consensus 182 ~g~~~~~~~~vASE~~al~~~g~------------------~~ir~v~PGeiv~i~~~g 222 (479)
T PLN02440 182 MGRRSNGAVVFASETCALDLIGA------------------TYEREVNPGEVIVVDKDK 222 (479)
T ss_pred EEEeCCCEEEEEECchHHhccCC------------------cEEEEeCCCeEEEEECCC
Confidence 3444 356999999999997643 357889999999998776
No 116
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=69.86 E-value=3.8 Score=44.76 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=31.7
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
+.|..++.++||||+++|..+.. .+..|+||+.++++.++
T Consensus 211 ~~g~~~~~~~~aSE~~al~~~~~-------------------~~~~l~pGei~~i~~~~ 250 (640)
T PTZ00295 211 LVGIGDDSIYVASEPSAFAKYTN-------------------EYISLKDGEIAELSLEN 250 (640)
T ss_pred EEEEcCceEEEEechHHHHhhCc-------------------EEEEeCCCeEEEEECCe
Confidence 45666788999999999987653 24459999999998766
No 117
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=61.19 E-value=8.3 Score=40.37 Aligned_cols=67 Identities=9% Similarity=-0.032 Sum_probs=43.3
Q ss_pred hccc-CCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCC--CCc-----------------
Q 015804 11 VGEL-RKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISES--GPI----------------- 70 (400)
Q Consensus 11 ~~~~-~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~--~~~----------------- 70 (400)
.|.. ++.++||||.++|..++. +.|+.++||++++++.+ +..
T Consensus 182 ~g~~~~~~~~~ASE~~al~~~g~------------------~~~~~~~pGe~v~i~~~~~~~~~~~~~~~~~~~c~fe~i 243 (445)
T PRK08525 182 LGRLKDGGYIVASETCAFDLIGA------------------EFIRDVKPGEMLIFEQGNDEFESIQLFEPTPRICAFEYI 243 (445)
T ss_pred EEEecCCEEEEEECHHHhhccCC------------------cEEEEeCCCeEEEEEcCCCceEEEEecCCCCccceeEee
Confidence 3443 358999999999965432 24778999999999842 311
Q ss_pred CCCCC----hhHHHHHHHHHHHHHHHHHh
Q 015804 71 PASVP----CSMSVQRVLNALRKSVMQRS 95 (400)
Q Consensus 71 ~~~~~----~~e~~~~l~~~L~~AV~~rl 95 (400)
|-.++ ....+-++|..+-+.....+
T Consensus 244 Y~~rpds~~~g~~v~~~R~~~G~~La~~~ 272 (445)
T PRK08525 244 YFARPDSIVFGKNVYEVRKKMGEELAKKF 272 (445)
T ss_pred eecCCCceECCEEHHHHHHHHHHHHHHHh
Confidence 11111 23356677777777777766
No 118
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=57.70 E-value=5.5 Score=41.91 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=17.5
Q ss_pred hcCceEEEecccccccCCCCcc
Q 015804 243 ISKSRIILVGSGADEQCAGYGR 264 (400)
Q Consensus 243 ~~g~kVvLsG~GaDElF~GY~~ 264 (400)
..|.=.||.-.--||-+-||-.
T Consensus 506 ~~GglLVLGSaNVDE~LrGYLT 527 (706)
T KOG2303|consen 506 RPGGLLVLGSANVDESLRGYLT 527 (706)
T ss_pred CCCceEEEecCccchHhhhhhh
Confidence 4577788888888999999864
No 119
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=43.32 E-value=1.2e+02 Score=28.65 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=30.5
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCC-----CccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQF-----APDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~-----~~d~~~A~~~a~~l~ 169 (400)
+.+++|||=||+.-+..|.+. . ..+..+|+.-.+.. .......+..|+.++
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~-~--~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~alg 58 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKE-H--EVISLVNIMPENEESYMFHGVNAHLTDLQAESIG 58 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHh-C--eeEEEEEEecCCCCcccccccCHHHHHHHHHHcC
Confidence 568999999999877666554 2 23455555433211 223445566666664
No 120
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=39.35 E-value=10 Score=19.62 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=10.5
Q ss_pred hcCCCcccCCCCC
Q 015804 301 ADNGKEARFPFLD 313 (400)
Q Consensus 301 ma~gvE~R~PFLD 313 (400)
|.|++.+|+|-|.
T Consensus 1 mthsmrlrfptln 13 (14)
T PF08057_consen 1 MTHSMRLRFPTLN 13 (14)
T ss_pred CccceeeeccccC
Confidence 5688899999775
No 121
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=34.47 E-value=1.5e+02 Score=28.17 Aligned_cols=51 Identities=29% Similarity=0.281 Sum_probs=31.0
Q ss_pred eEEEecCCcchHHHHHHHHhhcCCCCcee-EEEeecCCC-----CCccHHHHHHHHHHHh
Q 015804 116 VAVLFSGGLDSMILAALLNECLDPSYEID-LLNVSFDGQ-----FAPDRISAKAGLKELR 169 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~~~~~~~i~-~ftvgf~~~-----~~~d~~~A~~~a~~l~ 169 (400)
+.+++|||=||+.-+..+-+.+ ..+. ..++--+.. ..+....+...|+.++
T Consensus 3 ~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~g 59 (223)
T COG2102 3 VIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMG 59 (223)
T ss_pred EEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcC
Confidence 5789999999987766666653 2343 344433322 1244556777777664
No 122
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=33.79 E-value=87 Score=29.55 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=14.5
Q ss_pred eEEEecCCcchHHHHHHHHhh
Q 015804 116 VAVLFSGGLDSMILAALLNEC 136 (400)
Q Consensus 116 vgv~LSGGLDSs~Iaala~~~ 136 (400)
+.+++|||=||++-...|.+.
T Consensus 3 ~v~l~SGGKDS~lAl~~a~~~ 23 (218)
T PF01902_consen 3 VVALWSGGKDSCLALYRALRQ 23 (218)
T ss_dssp EEEE--SSHHHHHHHHHHHHT
T ss_pred EEEEEcCcHHHHHHHHHHHHh
Confidence 578999999999866655553
No 123
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=23.76 E-value=1.3e+02 Score=30.55 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=27.7
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeec
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSF 150 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf 150 (400)
..+-+..|||+|=.-|..+++. +.|++.|-||-
T Consensus 279 ~~vkI~aSgGine~~I~~~~~~----g~piD~~GVGt 311 (352)
T PRK07188 279 KHVKIIVSSGFDAKKIREFEAQ----NVPVDIYGVGS 311 (352)
T ss_pred CCcEEEEeCCCCHHHHHHHHHc----CCCccEEecCc
Confidence 5688999999999999998765 34799998884
No 124
>PLN02360 probable 6-phosphogluconolactonase
Probab=23.65 E-value=1.3e+02 Score=29.12 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=26.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCc
Q 015804 74 VPCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGL 124 (400)
Q Consensus 74 ~~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGL 124 (400)
.+.++..+.+.+.+.+.++..+ .....+++.||||-
T Consensus 17 ~~~~el~~~~a~~i~~~~~~a~---------------~~~~~~~lalsGGS 52 (268)
T PLN02360 17 ENLDELSTDLAEYIAELSEASV---------------KERGVFAIALSGGS 52 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---------------HhCCcEEEEECCCC
Confidence 3567777777777777777666 35567899999994
No 125
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=23.61 E-value=36 Score=32.49 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=12.5
Q ss_pred CceEEEecCCcchHH
Q 015804 114 APVAVLFSGGLDSMI 128 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~ 128 (400)
.--|++||||.||-.
T Consensus 55 Gy~g~llSGGm~srg 69 (275)
T COG1856 55 GYEGCLLSGGMDSRG 69 (275)
T ss_pred CceeEEEeCCcCCCC
Confidence 345999999999975
Done!