Query 015804
Match_columns 400
No_of_seqs 175 out of 1428
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:57:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jgt_A Beta-lactam synthetase; 100.0 1.2E-49 4.2E-54 415.4 18.9 294 10-373 144-456 (513)
2 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 1.7E-49 5.7E-54 413.6 19.6 287 18-376 153-459 (503)
3 1ct9_A Asparagine synthetase B 100.0 6E-49 2E-53 413.6 19.1 289 10-369 146-458 (553)
4 1xng_A NH(3)-dependent NAD(+) 98.8 1.2E-08 4.1E-13 97.4 8.9 76 75-169 4-79 (268)
5 1kqp_A NAD+ synthase, NH(3)-de 98.8 3.4E-08 1.2E-12 94.6 11.4 79 74-169 16-98 (271)
6 3bl5_A Queuosine biosynthesis 98.6 9.3E-08 3.2E-12 87.5 10.0 54 113-169 3-56 (219)
7 3n05_A NH(3)-dependent NAD(+) 98.5 2.5E-07 8.4E-12 97.8 9.5 142 78-266 304-447 (590)
8 3fiu_A NH(3)-dependent NAD(+) 98.4 4.7E-07 1.6E-11 85.6 8.6 75 75-169 8-82 (249)
9 2e18_A NH(3)-dependent NAD(+) 98.4 7.6E-07 2.6E-11 84.2 9.0 53 114-169 23-75 (257)
10 3p52_A NH(3)-dependent NAD(+) 98.3 1.7E-06 6E-11 81.7 10.1 76 75-169 5-80 (249)
11 3k32_A Uncharacterized protein 98.2 4.1E-06 1.4E-10 76.5 9.5 51 114-169 7-57 (203)
12 2pg3_A Queuosine biosynthesis 98.1 1E-05 3.5E-10 75.0 10.6 52 115-169 4-55 (232)
13 2dpl_A GMP synthetase, GMP syn 98.0 4.4E-05 1.5E-09 74.2 11.6 54 113-168 20-74 (308)
14 1wxi_A NH(3)-dependent NAD(+) 97.9 0.0001 3.6E-09 70.5 12.1 78 74-169 17-102 (275)
15 1kor_A Argininosuccinate synth 97.7 9.1E-05 3.1E-09 74.6 9.3 51 115-169 2-52 (400)
16 2nz2_A Argininosuccinate synth 97.7 0.00012 4E-09 74.0 9.4 53 112-169 4-56 (413)
17 1vl2_A Argininosuccinate synth 97.7 0.00019 6.6E-09 72.5 10.7 53 112-169 13-65 (421)
18 1wy5_A TILS, hypothetical UPF0 97.6 0.00038 1.3E-08 67.6 12.4 75 81-169 5-84 (317)
19 2hma_A Probable tRNA (5-methyl 97.5 0.00019 6.6E-09 71.6 8.3 55 112-169 8-70 (376)
20 1k92_A Argininosuccinate synth 97.4 0.00047 1.6E-08 70.3 10.2 55 112-169 9-63 (455)
21 2der_A TRNA-specific 2-thiouri 97.4 0.00042 1.4E-08 69.2 8.7 56 111-169 15-78 (380)
22 3sdb_A Glutamine-dependent NAD 97.3 0.0002 7E-09 76.7 6.6 79 78-169 339-421 (680)
23 2vxo_A GMP synthase [glutamine 97.3 0.00059 2E-08 73.3 10.1 57 112-169 239-295 (697)
24 3tqi_A GMP synthase [glutamine 97.3 0.00071 2.4E-08 70.4 9.4 56 112-169 229-285 (527)
25 3q4g_A NH(3)-dependent NAD(+) 97.2 0.0017 5.7E-08 62.2 11.0 77 74-169 18-102 (279)
26 1gpm_A GMP synthetase, XMP ami 97.2 0.00058 2E-08 71.0 8.1 55 112-168 226-281 (525)
27 4f4h_A Glutamine dependent NAD 96.9 0.0019 6.4E-08 67.8 8.6 78 78-169 278-355 (565)
28 2ywb_A GMP synthase [glutamine 96.9 0.0029 9.9E-08 65.4 9.9 55 112-169 208-262 (503)
29 3ilv_A Glutamine-dependent NAD 96.7 0.0038 1.3E-07 66.3 9.4 76 79-169 282-397 (634)
30 3dpi_A NAD+ synthetase; ssgcid 96.7 0.0042 1.4E-07 59.6 8.7 54 114-169 47-106 (285)
31 2c5s_A THII, probable thiamine 96.6 0.0041 1.4E-07 62.6 8.3 53 114-169 188-241 (413)
32 3a2k_A TRNA(Ile)-lysidine synt 96.6 0.0092 3.2E-07 60.9 10.8 58 112-169 17-78 (464)
33 1sur_A PAPS reductase; assimil 96.4 0.005 1.7E-07 56.0 7.0 53 114-169 45-97 (215)
34 3uow_A GMP synthetase; structu 96.3 0.0088 3E-07 62.6 8.6 54 113-168 255-309 (556)
35 1ni5_A Putative cell cycle pro 95.9 0.021 7.2E-07 57.8 8.8 58 112-169 12-73 (433)
36 3rjz_A N-type ATP pyrophosphat 95.8 0.011 3.8E-07 55.2 6.0 52 115-169 6-63 (237)
37 2o8v_A Phosphoadenosine phosph 95.8 0.026 8.9E-07 52.8 8.5 53 114-169 46-98 (252)
38 1zun_A Sulfate adenylyltransfe 95.1 0.051 1.7E-06 52.9 8.1 55 115-169 48-103 (325)
39 2wsi_A FAD synthetase; transfe 94.7 0.053 1.8E-06 52.3 6.9 55 114-169 54-128 (306)
40 2oq2_A Phosphoadenosine phosph 94.2 0.076 2.6E-06 49.8 6.8 55 115-169 43-97 (261)
41 1ao0_A Glutamine phosphoribosy 94.0 0.029 1E-06 57.1 3.7 68 10-95 181-270 (459)
42 1vbk_A Hypothetical protein PH 91.8 0.35 1.2E-05 46.5 7.4 49 114-169 180-228 (307)
43 2goy_A Adenosine phosphosulfat 91.4 0.58 2E-05 44.0 8.4 52 114-169 55-106 (275)
44 1xff_A D-fructose-6-, glucosam 91.2 0.12 4E-06 47.8 3.4 40 10-68 179-218 (240)
45 3fwk_A FMN adenylyltransferase 86.6 2.5 8.5E-05 40.7 9.0 54 115-169 60-133 (308)
46 1ecf_A Glutamine phosphoribosy 85.2 0.41 1.4E-05 49.2 2.9 35 16-68 202-236 (504)
47 2bpl_A Glucosamine--fructose-6 76.7 1.4 4.7E-05 46.3 3.3 40 10-68 179-218 (608)
48 3mdn_A Glutamine aminotransfer 40.7 15 0.00051 34.4 2.8 38 10-68 211-251 (274)
No 1
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=100.00 E-value=1.2e-49 Score=415.40 Aligned_cols=294 Identities=19% Similarity=0.144 Sum_probs=218.6
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhh-hhhcCceeeCCCcEEEEc--CCCCc---C-------CCCCh
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHC-ETHLGEHNIHSACSDIIS--ESGPI---P-------ASVPC 76 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~-T~~~gI~~l~pG~~l~i~--~~~~~---~-------~~~~~ 76 (400)
+.+...+.++||||+|+|++++. +...+.. .+.. |+|++|++|||||+++++ .++.. + ...+.
T Consensus 144 yy~~~~~~~~faSe~~aL~~~~~-~~~~~l~---~~~~~t~~~~i~~l~pG~~l~i~~~~g~~~~~~yw~~~~~~~~~~~ 219 (513)
T 1jgt_A 144 YTCVAPGEVRASTEAKALAAHRD-PKGFPLA---DARRVAGLTGVYQVPAGAVMDIDLGSGTAVTHRTWTPGLSRRILPE 219 (513)
T ss_dssp EEEEETTEEEEESCHHHHHTC---CCCCCCT---TSEECSSCSSCEECCTTEEEEEETTTTEEEEEECCCCCCSCBCCCH
T ss_pred EEEEeCCEEEEcchHHHHHhccC-ccccccc---CCCccccccceEEcCCCcEEEEEcCCCCEEEEeecCCcccccCCCH
Confidence 45566789999999999999864 3444432 2222 999999999999999998 44321 1 12467
Q ss_pred hHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCc
Q 015804 77 SMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAP 156 (400)
Q Consensus 77 ~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~ 156 (400)
++++++++++|.+||++|+ ++|+|||++||||+|||+|++++++.. .++++||++|++ .+
T Consensus 220 ~~~~~~l~~~L~~aV~~rl---------------~sd~~vgv~LSGGlDSS~vaala~~~~---~~v~tfti~~~~--~~ 279 (513)
T 1jgt_A 220 GEAVAAVRAALEKAVAQRV---------------TPGDTPLVVLSGGIDSSGVAACAHRAA---GELDTVSMGTDT--SN 279 (513)
T ss_dssp HHHHHHHHHHHHHHHHHHS---------------CTTCCCEEECCSSHHHHHHHHHHHHHH---SSCEEEEEECSS--CC
T ss_pred HHHHHHHHHHHHHHHHHHH---------------hCCCcEEEECCCcHHHHHHHHHHHHhC---CCceEEEcCCCC--CC
Confidence 8999999999999999999 699999999999999999999998875 369999999975 57
Q ss_pred cHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCC--cccchhHHHHHHHhcCCCcccccccCCCc
Q 015804 157 DRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANT--YMDLNIGIALWLAAGGDGWVYEGVTSSND 234 (400)
Q Consensus 157 d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (400)
|..+|+.+|++++. +|+ .+..+.+++....+++ ++..++ ++..+..+++|++++
T Consensus 280 E~~~A~~vA~~lg~-----~h~--~i~i~~~~~~~~l~~~---~~~~~~~~p~~~~~~~~~~~l~~-------------- 335 (513)
T 1jgt_A 280 EFREARAVVDHLRT-----RHR--EITIPTTELLAQLPYA---VWASESVDPDIIEYLLPLTALYR-------------- 335 (513)
T ss_dssp CHHHHHHHHHHHTC-----EEE--EEECCHHHHHTTHHHH---HHHHCCCCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhCC-----CcE--EEECCHHHHHHHHHHH---HHHhCCCCcccchhHHHHHHHHH--------------
Confidence 99999999999974 233 3344444554333333 333322 222334567777764
Q ss_pred hhhHHHHhhcCceEEEecccccccCCCCccchhhhcCCCcchhHHHHHHHHHHHHhhccCccchhhh----cCCCcccCC
Q 015804 235 VDQQRVKYISKSRIILVGSGADEQCAGYGRHRTKYKHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCA----DNGKEARFP 310 (400)
Q Consensus 235 ~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~~~~~~l~~~l~~dl~~~~~~~L~r~Dr~sm----a~gvE~R~P 310 (400)
. ++.|++|+|||+||||+|+||.+|. .|..+.++. +..++..++. ||++| ++|+|+|+|
T Consensus 336 -----~-a~~g~~VvltG~GaDElfgGY~~~~------~~~~l~~e~---l~~l~~~~ll--Dr~sm~la~a~glE~R~P 398 (513)
T 1jgt_A 336 -----A-LDGPERRILTGYGADIPLGGMHRED------RLPALDTVL---AHDMATFDGL--NEMSPVLSTLAGHWTTHP 398 (513)
T ss_dssp -----H-CCSSCCEEECCTTTHHHHTTTCCCS------CCHHHHHHH---HHHHHHCTTC--CTTCTHHHHTTTCEEECG
T ss_pred -----H-HHcCCCEEEeCCChhhcccCccccC------ChhhcCHHH---HHHHhhccch--hhhhhhhhhhcCcceECC
Confidence 3 3789999999999999999999872 354555442 3333344444 99999 999999999
Q ss_pred CCCHHHHHHHhcCChhhhhccCCCCCCCchHHHHHHHHhcCchhhhcCCCCcccCCchhhHhh
Q 015804 311 FLDEDVIRTLLDIPLWEIANLDQPSGTGDKKILREVAKMLGLYEAATLPKRAIQFGSRIARES 373 (400)
Q Consensus 311 FLD~~vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~~lP~~i~~R~K~g~q~gs~~~~~~ 373 (400)
|||++|||||++||.++|+ + +..+|||||++|++++|++|++|+|+||++|++..+++
T Consensus 399 fLD~~lve~a~~lP~~~k~--~---~~~~K~iLR~a~~~~lP~~i~~R~K~gf~~p~~~~~~l 456 (513)
T 1jgt_A 399 YWDREVLDLLVSLEAGLKR--R---HGRDKWVLRAAMADALPAETVNRPKLGVHEGSGTTSSF 456 (513)
T ss_dssp GGSHHHHHHHHHBCHHHHE--E---TTEETHHHHHHHTTTSCHHHHHSCCC---------CHH
T ss_pred CCCHHHHHHHHcCCHHHhc--C---CCCCHHHHHHHHHhhCCHHHHhCCcCCCCCChhHHHHH
Confidence 9999999999999999975 3 23689999999999999999999999999999966554
No 2
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=100.00 E-value=1.7e-49 Score=413.60 Aligned_cols=287 Identities=15% Similarity=0.117 Sum_probs=213.0
Q ss_pred EEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc-------C---------CCCChhHHHH
Q 015804 18 EWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI-------P---------ASVPCSMSVQ 81 (400)
Q Consensus 18 ~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~-------~---------~~~~~~e~~~ 81 (400)
++||||+++|+++.... -.|+|++|++|+|||+++++.++.. + ...+.+++++
T Consensus 153 ~~faSE~~al~~~~~~~-----------~~T~~~~v~~l~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~~~~~~~~~~~~ 221 (503)
T 1q15_A 153 LWFEEEALVCQSLMRAD-----------TYTPVKNAQRLKPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLA 221 (503)
T ss_dssp SCBCCHHHHTTCSCCCT-----------TCCSBTTEEECCSSEEEEEEECTTCCEEEEEEESCCCCCCSCBCCCHHHHHH
T ss_pred eEEecchHHHHhccCCC-----------CCcccCCeEEECCCeEEEEeCCCcccccceeeecCCcccccccCCCHHHHHH
Confidence 89999999998862100 0188999999999999999876521 1 1246788999
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHH
Q 015804 82 RVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISA 161 (400)
Q Consensus 82 ~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A 161 (400)
+++++|.+||++|+ ++|+|||++||||+|||+|++++++.. .++.+||++|++ .+|..+|
T Consensus 222 ~l~~~L~~aV~~rl---------------~sd~~v~v~LSGGlDSs~vaala~~~~---~~~~~~t~~~~~--~~E~~~A 281 (503)
T 1q15_A 222 LIDRYLNAPLEDLA---------------PRFDTVGIPLSGGLDSSLVTALASRHF---KKLNTYSIGTEL--SNEFEFS 281 (503)
T ss_dssp HHHHHHHHHHHHHG---------------GGCSEEEEECCSSHHHHHHHHHHTTTC---SEEEEEEEEETT--BCCHHHH
T ss_pred HHHHHHHHHHHHHH---------------hCCCcEEEECCCCHHHHHHHHHHHHhC---CCcEEEEEeCCC--ccHHHHH
Confidence 99999999999999 699999999999999999999998865 479999999985 5789999
Q ss_pred HHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCC--cccchhHHHHHHHhcCCCcccccccCCCchhhHH
Q 015804 162 KAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANT--YMDLNIGIALWLAAGGDGWVYEGVTSSNDVDQQR 239 (400)
Q Consensus 162 ~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (400)
+.+|++++. +|+.+.+ +.+++. +.+.+.++..+. ++..+..+++|++++
T Consensus 282 ~~vA~~lg~-----~h~~i~~--~~~~~~---~~l~~~~~~~~~~~p~~~~~~~~~~~l~~------------------- 332 (503)
T 1q15_A 282 QQVADALGT-----HHQMKIL--SETEVI---NGIIESIYYNEIFDGLSAEIQSGLFNVYR------------------- 332 (503)
T ss_dssp HHHHHHHTC-----EEEEEEE--CHHHHH---HHHHHHHHHHCCCCHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHhCC-----ceEEEEC--CHHHHH---HHHHHHHHHhcCCCcccchhHHHHHHHHH-------------------
Confidence 999999974 3344444 344443 233344433332 223334567787764
Q ss_pred HHhhcCceEEEecccccccCCCCccchhhhcCCCcchhHHHHHHHHHHHHhhccCccchhhhcCCCcccCCCCCHHHHHH
Q 015804 240 VKYISKSRIILVGSGADEQCAGYGRHRTKYKHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCADNGKEARFPFLDEDVIRT 319 (400)
Q Consensus 240 ~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~~~~~~l~~~l~~dl~~~~~~~L~r~Dr~sma~gvE~R~PFLD~~vve~ 319 (400)
.| +.|++|+|||+||||+|+||.+|...+. .+..+..+.. .+.. .+|.+.||++|++|+|+|+||||++||||
T Consensus 333 ~a-~~~~~VvltG~GaDElf~GY~~~~~~~~--~~~~l~~e~~---~r~~-~~L~r~Dr~~ma~glE~R~PfLD~~lve~ 405 (503)
T 1q15_A 333 QA-QGQVSCMLTGYGSDLLFGGILKPGAQYD--NPNQLLAEQV---YRTR-WTGEFATHGASCYGIDIRHPFWSHSLISL 405 (503)
T ss_dssp HH-BTTBSEEECCTTHHHHHTTTSCTTCCCS--CHHHHHHHHH---HHHH-HHSTTCCHHHHHTTCEEECTTCCHHHHHH
T ss_pred HH-HCCCCEEEeCCChhhhccChHHHHHhcC--CHHHHhHHHH---HHHH-HhhhhhhHHHHHcCCCEECCCCCHHHHHH
Confidence 33 7899999999999999999998853221 2222222222 2222 46899999999999999999999999999
Q ss_pred HhcCChhhhhccCCCCCCCchHHHHHHHHh--cCchhhhcCCCCcccCCchhhHhhhhc
Q 015804 320 LLDIPLWEIANLDQPSGTGDKKILREVAKM--LGLYEAATLPKRAIQFGSRIARESNRK 376 (400)
Q Consensus 320 a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~--~lP~~i~~R~K~g~q~gs~~~~~~~~~ 376 (400)
|++||.++|+ + |..+|||||+||++ ++|++|++|+|+|||+|++++++..+-
T Consensus 406 a~~lP~~~k~--~---~~~~K~iLR~a~~~~~~lP~~i~~R~K~gf~~~~~~~~~~~~~ 459 (503)
T 1q15_A 406 CHALHPDYKI--F---DNEVKNILREYADSLQLLPKDIVWRKKIGIHEGSSVNQAFANV 459 (503)
T ss_dssp HHTBCGGGTE--E---TTEESHHHHHHHHHTSCSCHHHHCC---------CHHHHHHHH
T ss_pred HHhCCHHHHh--C---CCCcHHHHHHHHhcCCcCCHHHhcCCCCCCCCCcchHHHHHHH
Confidence 9999999965 4 23689999999999 999999999999999999998876543
No 3
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=6e-49 Score=413.62 Aligned_cols=289 Identities=20% Similarity=0.216 Sum_probs=220.2
Q ss_pred hhcc-cCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc-C---C------CCChhH
Q 015804 10 FVGE-LRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI-P---A------SVPCSM 78 (400)
Q Consensus 10 ~~~~-~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~-~---~------~~~~~e 78 (400)
+.|. -++.++||||+++|+.. +++|++|||||+++++.+... + . ..+.++
T Consensus 146 y~~~~~~~~~~faSe~~al~~~-------------------~~~i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~ 206 (553)
T 1ct9_A 146 YMGYDEHGQLYVASEMKALVPV-------------------CRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVT 206 (553)
T ss_dssp EEEECTTCCEEEESSGGGTTTT-------------------CSEEEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCC
T ss_pred EEEEecCCEEEEeechHHHHhh-------------------cCCEEEECCCeEEEEcCCcEEEeecCCccccccCCCHHH
Confidence 3344 25689999999999852 478999999999998654311 1 1 124467
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCC-----------CceeEEE
Q 015804 79 SVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPS-----------YEIDLLN 147 (400)
Q Consensus 79 ~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~-----------~~i~~ft 147 (400)
++++++++|.+||++|+ ++|+|||++||||+|||+|++++++..... .++++||
T Consensus 207 ~~~~lr~~L~~aV~~rl---------------~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfs 271 (553)
T 1ct9_A 207 DKNELRQALEDSVKSHL---------------MSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFA 271 (553)
T ss_dssp CHHHHHHHHHHHHHHHT---------------CCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEE
T ss_pred HHHHHHHHHHHHHHHHh---------------cCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEE
Confidence 89999999999999999 699999999999999999999999876421 1389999
Q ss_pred eecCCCCCccHHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCccc--chhHHHHHHHhcCCCcc
Q 015804 148 VSFDGQFAPDRISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTYMD--LNIGIALWLAAGGDGWV 225 (400)
Q Consensus 148 vgf~~~~~~d~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~~d--~~~~~~~~~~~~~~~~~ 225 (400)
++|++ .+|..+|+.+|++++..| +++..+.+++.. .+.+++++.+++.. ....+++|++++
T Consensus 272 ig~~~--~~E~~~A~~vA~~lg~~h-------~~i~~~~~~~~~---~l~~~i~~~~~~~~~~~~~~~~~~~l~~----- 334 (553)
T 1ct9_A 272 VGLPG--SPDLKAAQEVANHLGTVH-------HEIHFTVQEGLD---AIRDVIYHIETYDVTTIRASTPMYLMSR----- 334 (553)
T ss_dssp EESTT--CHHHHHHHHHHHHHTCEE-------EEEECCHHHHHH---HHHHHHHHHCCCCHHHHHHHHHHHHHHH-----
T ss_pred ecCCC--CcHHHHHHHHHHHhCCCC-------EEEECCHHHHHH---HHHHHHHHhcCCCcccchHHHHHHHHHH-----
Confidence 99976 479999999999998532 334444444433 33444444443211 112467787774
Q ss_pred cccccCCCchhhHHHHhhcCceEEEecccccccCCCCccchhhhcCCCcchhHHHHHHHHHHHHhhccCccchhhhcCCC
Q 015804 226 YEGVTSSNDVDQQRVKYISKSRIILVGSGADEQCAGYGRHRTKYKHGSWVGLDEEMKLDMQRIWKRNLGRDDRCCADNGK 305 (400)
Q Consensus 226 ~~~~~~~~~~~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~~~~~~~~~~~l~~~l~~dl~~~~~~~L~r~Dr~sma~gv 305 (400)
.|++.|++|+|||+||||+||||.+|+... .+..+.+++..++.++...++.|.||++|++|+
T Consensus 335 --------------~a~~~g~~vvLsG~GaDElfgGY~~~~~~~---~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~gl 397 (553)
T 1ct9_A 335 --------------KIKAMGIKMVLSGEGSDEVFGGYLYFHKAP---NAKELHEETVRKLLALHMYDCARANKAMSAWGV 397 (553)
T ss_dssp --------------HHHHTTCCEEECCTTHHHHHTCSGGGGGCC---SHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTC
T ss_pred --------------HHHHcCCeEEEECCCchhcccCcHhHhhCc---chhhHHHHHHHHHHHHhhhcchhhhhHHhhcCc
Confidence 356889999999999999999999886532 334455566666666555667789999999999
Q ss_pred cccCCCCCHHHHHHHhcCChhhhhccCCCCCCCchHHHHHHHHhcCchhhhcCCCCcccCCchh
Q 015804 306 EARFPFLDEDVIRTLLDIPLWEIANLDQPSGTGDKKILREVAKMLGLYEAATLPKRAIQFGSRI 369 (400)
Q Consensus 306 E~R~PFLD~~vve~a~~lP~~~k~k~~~~~g~~~K~iLR~a~~~~lP~~i~~R~K~g~q~gs~~ 369 (400)
|+|+||||++|||+|++||+++|+ +. .|..+|||||+||+++||++|++|+|+||+.|.+.
T Consensus 398 E~R~PfLD~~lve~a~~lP~~~k~--~~-~g~~~K~iLR~a~~~~LP~~i~~R~K~~f~~p~~~ 458 (553)
T 1ct9_A 398 EARVPFLDKKFLDVAMRINPQDKM--CG-NGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGY 458 (553)
T ss_dssp EEECGGGCHHHHHHHHHSCGGGTC--C----CCTTHHHHHHHGGGSCHHHHTCCCCTTCCTTCH
T ss_pred eeECCcCCHHHHHHHhcCCHHHhc--cC-CCCcchHHHHHHHHhhCCHHHHcCCCcCCCCCccH
Confidence 999999999999999999999964 41 12358999999999999999999999999888764
No 4
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=98.78 E-value=1.2e-08 Score=97.36 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCC
Q 015804 75 PCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQF 154 (400)
Q Consensus 75 ~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~ 154 (400)
+.++..+.+.+.|++.|+.. ...++.+.||||+||+++++++.+.. +.++.++++.+....
T Consensus 4 ~~~~~~~~l~~~l~~~v~~~-----------------~~~~vvv~lSGGiDSsv~~~l~~~~~--~~~v~av~~~~~~~~ 64 (268)
T 1xng_A 4 DYQKLIVYLCDFLEKEVQKR-----------------GFKKVVYGLSGGLDSAVVGVLCQKVF--KENAHALLMPSSVSM 64 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-----------------TCCCEEEECCSSHHHHHHHHHHHHHH--GGGEEEEECCCSSSC
T ss_pred CHHHHHHHHHHHHHHHHHHh-----------------CCCCEEEEccCcHHHHHHHHHHHHhC--CCCEEEEEeCCCCCC
Confidence 45566677777777777543 34579999999999999999998765 246888888865443
Q ss_pred CccHHHHHHHHHHHh
Q 015804 155 APDRISAKAGLKELR 169 (400)
Q Consensus 155 ~~d~~~A~~~a~~l~ 169 (400)
..|...|+..|++++
T Consensus 65 ~~e~~~a~~~a~~lg 79 (268)
T 1xng_A 65 PENKTDALNLCEKFS 79 (268)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 457788999999986
No 5
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=98.77 E-value=3.4e-08 Score=94.60 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=55.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcC----CCCceeEEEee
Q 015804 74 VPCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLD----PSYEIDLLNVS 149 (400)
Q Consensus 74 ~~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~----~~~~i~~ftvg 149 (400)
.++++.++++.+.|++.|+++. ..++. +.||||+|||++++++++... .+...+.+++.
T Consensus 16 ~~~~~~i~~~~~~L~d~v~~~g---------------~~~vv--vgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~ 78 (271)
T 1kqp_A 16 IDPKQEIEDRVNFLKQYVKKTG---------------AKGFV--LGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVR 78 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHT---------------CCEEE--EECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHcC---------------CCCEE--EECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEE
Confidence 4677888889999999998875 35554 459999999999998876541 00003444444
Q ss_pred cCCCCCccHHHHHHHHHHHh
Q 015804 150 FDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 150 f~~~~~~d~~~A~~~a~~l~ 169 (400)
++-....|...|+.+|++++
T Consensus 79 ~~~~~~~d~~~A~~va~~lg 98 (271)
T 1kqp_A 79 LPHGTQQDEDDAQLALKFIK 98 (271)
T ss_dssp CCSSSCTTHHHHHHHHHHHC
T ss_pred eCCCCCCCHHHHHHHHHhcC
Confidence 54222347889999999996
No 6
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=98.65 E-value=9.3e-08 Score=87.49 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=44.2
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
..+++++||||+||+++++++.+.. .++.++++.+......|..+++.++++++
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~~---~~v~~~~~~~~~~~~~e~~~a~~~a~~lg 56 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKEF---EEVETVTFHYNQRHSQEVEVAKSIAEKLG 56 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC---SEEEEEEEESSCTTCHHHHHHHHHHHTTC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHcC---CceEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 4579999999999999999998764 47889998876543467788999998885
No 7
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.49 E-value=2.5e-07 Score=97.83 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCcc
Q 015804 78 MSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPD 157 (400)
Q Consensus 78 e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d 157 (400)
+..+++.+.+...++.++. ......+.+.||||+|||++++++.+..+ ..++.++++.+......|
T Consensus 304 ~~~~~~~~~~~~~l~~~~~-------------~~g~~~vvvglSGGvDSsv~a~la~~alG-~~~v~~v~m~~~~~~~~~ 369 (590)
T 3n05_A 304 DADEEVYSALVVGLRAYVA-------------KNGFRSVLIGLSGGIDSALVAAIACDALG-AQNVYGVSMPSKYSSDHS 369 (590)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------------TTTCCCEEEECCSSHHHHHHHHHHHHHHC-GGGEEEEECCCSSCCHHH
T ss_pred CcHHHHHHHHHHHHHHHHH-------------HhCCCcEEEEcCCCHHHHHHHHHHHHHhC-cccEEEEEECCCCCCHHH
Confidence 3456777777777777763 01345688999999999999999988642 146888887765444567
Q ss_pred HHHHHHHHHHHhhcCCcccceEEEecCCcchhccchHHHHhhcccCCCcccchh--HHHHHHHhcCCCcccccccCCCch
Q 015804 158 RISAKAGLKELRGIAPLRRWKLVEIDSDLSNLTSETKHVMSLINPANTYMDLNI--GIALWLAAGGDGWVYEGVTSSNDV 235 (400)
Q Consensus 158 ~~~A~~~a~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~i~~~i~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 235 (400)
...|+.+|++++. ++..++.+ +.. +.....+. .......++ ..-+.++
T Consensus 370 ~~~A~~la~~lgi-------~~~~i~i~--~~~---~~~~~~l~-~~~~~~~n~~ar~r~~~l----------------- 419 (590)
T 3n05_A 370 KGDAAELARRTGL-------NFRTVSIE--PMF---DAYMASLG-LTGLAEENLQSRLRGTTL----------------- 419 (590)
T ss_dssp HHHHHHHHHHHTC-------EEEECCSH--HHH---HHHHHHHC-CCTHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHcCC-------cEEEEECh--HHH---HHHHHHhc-ccchhhhHHHHHHHHHHH-----------------
Confidence 8899999999962 34444432 221 22222221 110111111 0111111
Q ss_pred hhHHHHhhcCceEEEecccccccCCCCccch
Q 015804 236 DQQRVKYISKSRIILVGSGADEQCAGYGRHR 266 (400)
Q Consensus 236 ~~~~~a~~~g~kVvLsG~GaDElF~GY~~~~ 266 (400)
..+|.+.|..|+.|| ..||++.||..+.
T Consensus 420 --~~~A~~~g~~vl~TG-n~se~~~Gy~t~~ 447 (590)
T 3n05_A 420 --MAISNQEGHIVLAPG-NKSELAVGYSTLY 447 (590)
T ss_dssp --HHHHHHHTCEEBCCC-CHHHHHHTCCCSS
T ss_pred --HHHHHhcCCEEEeCC-CHHHHhcCchhhc
Confidence 124567789999999 8899999987543
No 8
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.42 E-value=4.7e-07 Score=85.60 Aligned_cols=75 Identities=23% Similarity=0.156 Sum_probs=56.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCC
Q 015804 75 PCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQF 154 (400)
Q Consensus 75 ~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~ 154 (400)
+.++..+++.+.|++.|++.- ...+.+.||||+||+++++++.+... ..+ ++++.+....
T Consensus 8 ~~~~~~~~l~~~l~~~v~~~~-----------------~~~vvv~lSGGiDSsv~a~l~~~~~~--~~~-av~~~~~~~~ 67 (249)
T 3fiu_A 8 SPKEYSQKLVNWLSDSCMNYP-----------------AEGFVIGLSGGIDSAVAASLAVKTGL--PTT-ALILPSDNNQ 67 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHTTT-----------------CSEEEEECCSSHHHHHHHHHHHHTTS--CEE-EEECCCTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHhC-----------------CCCEEEEecCcHHHHHHHHHHHHhCC--CCE-EEEecCCCCC
Confidence 566778888888888886543 34678999999999999999988753 234 6666654333
Q ss_pred CccHHHHHHHHHHHh
Q 015804 155 APDRISAKAGLKELR 169 (400)
Q Consensus 155 ~~d~~~A~~~a~~l~ 169 (400)
..|...|+.+|++++
T Consensus 68 ~~~~~~a~~~a~~lg 82 (249)
T 3fiu_A 68 HQDMQDALELIEMLN 82 (249)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 457788999999996
No 9
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=98.39 E-value=7.6e-07 Score=84.21 Aligned_cols=53 Identities=26% Similarity=0.213 Sum_probs=43.4
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.++.+.||||+||+++++++.+..+ ..++.++++.+.. . .|...|+..|++++
T Consensus 23 ~~vvv~lSGGiDSs~~~~l~~~~~g-~~~v~av~~~~~~-~-~~~~~a~~~a~~lg 75 (257)
T 2e18_A 23 NGVVIGISGGVDSATVAYLATKALG-KEKVLGLIMPYFE-N-KDVEDAKLVAEKLG 75 (257)
T ss_dssp TCEEEECCSSHHHHHHHHHHHHHHC-GGGEEEEECCSSC-S-THHHHHHHHHHHHT
T ss_pred CcEEEEecCCHHHHHHHHHHHHhcC-CCcEEEEEeCCCC-c-hHHHHHHHHHHHhC
Confidence 4799999999999999999988752 1468888887753 2 67889999999996
No 10
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=98.33 E-value=1.7e-06 Score=81.71 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCC
Q 015804 75 PCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQF 154 (400)
Q Consensus 75 ~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~ 154 (400)
+.++..+.+..-|++.|++. ....+.+.||||+||+++++++.+..+ .++.++++.+....
T Consensus 5 ~~~~~~~~l~~~l~d~v~~~-----------------g~~~vvv~lSGGiDSsv~a~l~~~~~g--~~v~av~~~~~~~~ 65 (249)
T 3p52_A 5 DWQKITEKMCDFIQEKVKNS-----------------QSQGVVLGLSGGIDSALVATLCKRALK--ENVFALLMPTQISN 65 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHTS-----------------SCSEEEEECCSSHHHHHHHHHHHHHHT--TSEEEEECCSCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHh-----------------CCCCEEEEcCCCHHHHHHHHHHHHHcC--CcEEEEEecCCCCC
Confidence 34455555555555555432 345789999999999999999988642 46888887765433
Q ss_pred CccHHHHHHHHHHHh
Q 015804 155 APDRISAKAGLKELR 169 (400)
Q Consensus 155 ~~d~~~A~~~a~~l~ 169 (400)
..|...|+..|++++
T Consensus 66 ~~~~~~a~~~a~~lg 80 (249)
T 3p52_A 66 KANLEDALRLCADLN 80 (249)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 467788999999986
No 11
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.22 E-value=4.1e-06 Score=76.45 Aligned_cols=51 Identities=33% Similarity=0.365 Sum_probs=41.9
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.++++++|||+||++++.++.+.. .++.++++.+.... |...++..|+.++
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~g---~~v~~~~v~~~~~~--~~~~~~~~a~~lg 57 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKLG---YNPHLITINFGVIP--SYKLAEETAKILG 57 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTT---EEEEEEEEECSSSC--TTHHHHHHHHHHT
T ss_pred CeEEEEEECcHHHHHHHHHHHHcC---CCeEEEEEeCCCch--HHHHHHHHHHHhC
Confidence 478999999999999999988753 46888888875432 7788999999986
No 12
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.14 E-value=1e-05 Score=74.97 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=42.4
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.+.++||||+||+++++++.+.. .++.++++.+......|...++.+|++++
T Consensus 4 kvvv~lSGG~DS~~~l~ll~~~~---~~v~av~~~~g~~~~~e~~~a~~~a~~lg 55 (232)
T 2pg3_A 4 RAVVVFSGGQDSTTCLIQALQDY---DDVHCITFDYGQRHRAEIEVAQELSQKLG 55 (232)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHC---SEEEEEEEESSSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEecCcHHHHHHHHHHHHcC---CCEEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 58999999999999999998764 36888888775433357788999999986
No 13
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=97.96 E-value=4.4e-05 Score=74.20 Aligned_cols=54 Identities=17% Similarity=0.085 Sum_probs=37.7
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHH-HHHHH
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKA-GLKEL 168 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~-~a~~l 168 (400)
+.++.++||||+||+++++++.+..+ .++.++++.+......|...++. .++++
T Consensus 20 ~~kvlvalSGGvDSsvla~ll~~~~g--~~v~av~vd~g~~~~~e~~~~~~~~a~~l 74 (308)
T 2dpl_A 20 DSKAIIALSGGVDSSTAAVLAHKAIG--DRLHAVFVNTGFLRKGEPEFVVKTFRDEF 74 (308)
T ss_dssp TSCEEEECCSSHHHHHHHHHHHHHHG--GGEEEEEEECSCCCTTHHHHHHHHHTTTT
T ss_pred CCCEEEEEeChHHHHHHHHHHHHhhC--CCEEEEEEcCCCCChHHHHHHHHHHHHHc
Confidence 46899999999999999999987632 46888888754322345555554 33344
No 14
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=97.86 E-value=0.0001 Score=70.45 Aligned_cols=78 Identities=14% Similarity=0.253 Sum_probs=51.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcC--------CCCceeE
Q 015804 74 VPCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLD--------PSYEIDL 145 (400)
Q Consensus 74 ~~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~--------~~~~i~~ 145 (400)
.+.++.++++..-|++.|++.- ....+-+.||||+|||++++++++... .+..+.+
T Consensus 17 ~~~~~~i~~~~~~L~~~l~~~g----------------~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~a 80 (275)
T 1wxi_A 17 INAEEEIRRSVDFLKSYLQTYP----------------FIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIA 80 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHHHST----------------TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHcC----------------CCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEE
Confidence 3555666666666666665421 133577889999999999988877531 0125666
Q ss_pred EEeecCCCCCccHHHHHHHHHHHh
Q 015804 146 LNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 146 ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
+++.|.. ..|...|+.+|++++
T Consensus 81 v~~~~~~--~~~~~dA~~va~~lg 102 (275)
T 1wxi_A 81 VRLPYGV--QADEQDCQDAIAFIQ 102 (275)
T ss_dssp EECCSSS--CTTHHHHHHHHHHHC
T ss_pred EEeCCCC--ccCHHHHHHHHHHcC
Confidence 6665532 247888999999986
No 15
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=97.71 E-value=9.1e-05 Score=74.59 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=41.9
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.|.+++|||+|||+++.++.+... ..+.++++.+.. ..|...++..|++++
T Consensus 2 kVvva~SGG~DSsvll~ll~~~~g--~~V~av~vd~g~--~~e~e~a~~~A~~lG 52 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETYR--AEVIAFTADIGQ--GEEVEEAREKALRTG 52 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHT--CEEEEEEEESSC--SSCHHHHHHHHHHHT
T ss_pred cEEEEEeChHHHHHHHHHHHHhhC--CcEEEEEEeCCC--HHHHHHHHHHHHHhC
Confidence 478999999999999999887632 468888888754 457889999999986
No 16
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=97.66 E-value=0.00012 Score=74.05 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=43.5
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
+..+|.+++|||+||++++.++.+.. ..+.++++.+.. ..|...++..|++++
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~G---~eV~av~vd~g~--~~e~e~a~~~A~~lG 56 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQG---YDVIAYLANIGQ--KEDFEEARKKALKLG 56 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHTT---EEEEEEEEESSC--CCCHHHHHHHHHHHT
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHcC---CEEEEEEEECCc--HHHHHHHHHHHHHhC
Confidence 34589999999999999999988762 478889888754 267889999999986
No 17
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=97.65 E-value=0.00019 Score=72.46 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=43.6
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
-...|.+++|||+|||++++++.+.. ..+.++|+.+.. ..|...|+.+|++++
T Consensus 13 ~~~KVVVA~SGGlDSSv~a~~Lke~G---~eViavt~d~Gq--~~Ele~A~~vA~~lG 65 (421)
T 1vl2_A 13 MKEKVVLAYSGGLDTSVILKWLCEKG---FDVIAYVANVGQ--KDDFVAIKEKALKTG 65 (421)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEEEESSC--CCCHHHHHHHHHHHT
T ss_pred ccCCEEEEeCCcHHHHHHHHHHHHCC---CeEEEEEEEcCC--HHHHHHHHHHHHHcC
Confidence 34568999999999999999998863 578888887753 258999999999997
No 18
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=97.64 E-value=0.00038 Score=67.63 Aligned_cols=75 Identities=23% Similarity=0.186 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHH-hcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcC-CCCc-eeEEEeecCCCC--C
Q 015804 81 QRVLNALRKSVMQR-SSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLD-PSYE-IDLLNVSFDGQF--A 155 (400)
Q Consensus 81 ~~l~~~L~~AV~~r-l~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~-~~~~-i~~ftvgf~~~~--~ 155 (400)
..+.+.+.++++.. +. ....+|.+.+|||.||++++.++.+... .+.+ +.++++.+.-.. .
T Consensus 5 ~~~~~~~~~~i~~~~l~--------------~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~ 70 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIF--------------SGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAE 70 (317)
T ss_dssp HHHHHHHHHHHHHHCSC--------------SSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHH
T ss_pred HHHHHHHHHHHHHcCCC--------------CCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccH
Confidence 34666777777766 21 3567899999999999999999887532 1235 777887754321 2
Q ss_pred ccHHHHHHHHHHHh
Q 015804 156 PDRISAKAGLKELR 169 (400)
Q Consensus 156 ~d~~~A~~~a~~l~ 169 (400)
.|...++..++.++
T Consensus 71 ~~~~~v~~~a~~lg 84 (317)
T 1wy5_A 71 RDEEFCKEFAKERN 84 (317)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 35667888888885
No 19
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=97.50 E-value=0.00019 Score=71.61 Aligned_cols=55 Identities=25% Similarity=0.197 Sum_probs=42.0
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCC--------CCccHHHHHHHHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQ--------FAPDRISAKAGLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~--------~~~d~~~A~~~a~~l~ 169 (400)
....|.+.+|||+||+++++++.+.. .++.++++..... ...|...|+.+|++++
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~~G---~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lG 70 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQG---YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIG 70 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHTT---CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcC---CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhC
Confidence 34579999999999999999998864 5788888765321 1245678899999986
No 20
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=97.44 E-value=0.00047 Score=70.34 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=44.6
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
....|.+++|||+|||+++.++.+.. ..+.++++.+......|...++..|++++
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~G---~eViavtvd~Gq~~~~ele~a~~~A~~lG 63 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQKG---AVPYAYTANLGQPDEEDYDAIPRRAMEYG 63 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHTT---CEEEEEEEECCCTTCSCTTHHHHHHHHHT
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHcC---CEEEEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 55679999999999999999988763 57888888775432357889999999986
No 21
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=97.36 E-value=0.00042 Score=69.23 Aligned_cols=56 Identities=32% Similarity=0.275 Sum_probs=41.6
Q ss_pred cCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCC--------CCccHHHHHHHHHHHh
Q 015804 111 EEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQ--------FAPDRISAKAGLKELR 169 (400)
Q Consensus 111 ~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~--------~~~d~~~A~~~a~~l~ 169 (400)
.....|.+.+|||+||+++++++.+.. ..+.++++..... ...|...|+.+|+.++
T Consensus 15 ~~~~kVvVa~SGGvDSsv~a~lL~~~G---~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LG 78 (380)
T 2der_A 15 ETAKKVIVGMSGGVDSSVSAWLLQQQG---YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG 78 (380)
T ss_dssp --CCEEEEECCSCSTTHHHHHHHHTTC---CEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHcC---CeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcC
Confidence 445679999999999999999998863 5788888764221 1245678899999986
No 22
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=97.35 E-value=0.0002 Score=76.74 Aligned_cols=79 Identities=18% Similarity=0.110 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhc---C-CCCceeEEEeecCCC
Q 015804 78 MSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECL---D-PSYEIDLLNVSFDGQ 153 (400)
Q Consensus 78 e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~---~-~~~~i~~ftvgf~~~ 153 (400)
+..+++.+.+...++.++. ......+.+.||||+||++.+.++++.. + +..++.++++.....
T Consensus 339 ~~~~~~~~~~~~~l~~~l~-------------~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~~~~~ 405 (680)
T 3sdb_A 339 QDCYEAYNIQVSGLEQRLR-------------ALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFAT 405 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------------HTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC---
T ss_pred hhHHHHHHHHHHHHHHHHH-------------HcCCCcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEECCCCC
Confidence 4567788888888988873 1234568899999999997655554432 1 113566666554333
Q ss_pred CCccHHHHHHHHHHHh
Q 015804 154 FAPDRISAKAGLKELR 169 (400)
Q Consensus 154 ~~~d~~~A~~~a~~l~ 169 (400)
...+...|+.+|++++
T Consensus 406 ~~~~~~~A~~la~~lg 421 (680)
T 3sdb_A 406 GEHTKNNAIKLARALG 421 (680)
T ss_dssp -----CHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 2345678999999986
No 23
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=97.34 E-value=0.00059 Score=73.31 Aligned_cols=57 Identities=30% Similarity=0.375 Sum_probs=44.3
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.+.++.+.||||+||+++++++.+..+ ...+.++++.+......|...++..+++++
T Consensus 239 ~~~~vvv~lSGGvDSsVla~Ll~~alG-~~~V~aV~vd~g~~~~~e~e~a~~~a~~lG 295 (697)
T 2vxo_A 239 GTSKVLVLLSGGVDSTVCTALLNRALN-QEQVIAVHIDNGFMRKRESQSVEEALKKLG 295 (697)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHSC-GGGEEEEEEECSCCCSSTTHHHHHHHHHTT
T ss_pred cccceEEEccCchHHHHHHHHHHHhcC-CceEEEEEeccccCCcchHHHHHHHHHHhC
Confidence 346899999999999999999988742 146888888765433457778888888875
No 24
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=97.27 E-value=0.00071 Score=70.42 Aligned_cols=56 Identities=21% Similarity=0.130 Sum_probs=37.9
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHH-HHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKA-GLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~-~a~~l~ 169 (400)
.+..+.+.||||+||+++++++.+..+ .++.++++...-....|...+.+ .+++++
T Consensus 229 ~~~kvlvalSGGvDSsvla~ll~~~~G--~~v~av~vd~g~~~~~e~~~~~~~~a~~lg 285 (527)
T 3tqi_A 229 GKEQVIVGLSGGVDSAVTATLVHKAIG--DQLVCVLVDTGLLRLNEVDEVLNVFQKHLG 285 (527)
T ss_dssp TTSCEEEECTTTHHHHHHHHHHHHHHG--GGEEEEEECCSCSCTTHHHHHHHHHTTSSC
T ss_pred CCCeEEEEEecCcCHHHHHHHHHHHhC--CeEEEEEeccCCCChhHHHHHHHHHHHHcC
Confidence 347899999999999999999988632 46888887643222334444443 555543
No 25
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=97.24 E-value=0.0017 Score=62.22 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcC----C----CCceeE
Q 015804 74 VPCSMSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLD----P----SYEIDL 145 (400)
Q Consensus 74 ~~~~e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~----~----~~~i~~ 145 (400)
.+.++.++.+.+-|++-|++.- -..+-+.||||+||+++++++++... . +..+.+
T Consensus 18 ~~~~~~i~~~v~~L~d~l~~~g-----------------~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~a 80 (279)
T 3q4g_A 18 IDPQFEIERRVAFIKRKLTEAR-----------------YKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIA 80 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHT-----------------CCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHcC-----------------CCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEE
Confidence 3556666666677777666542 23567889999999999998654310 0 124555
Q ss_pred EEeecCCCCCccHHHHHHHHHHHh
Q 015804 146 LNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 146 ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
+++.|. ...|...|+.+|+.++
T Consensus 81 v~~p~~--~~~~~~~A~~~a~~lg 102 (279)
T 3q4g_A 81 VRLPYG--EQKDEDEAQLALSFIR 102 (279)
T ss_dssp EECCSS--SCSCHHHHHHHHHHHC
T ss_pred EEecCC--ChHHHHHHHHHHHHhC
Confidence 554443 2346788999999986
No 26
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=97.22 E-value=0.00058 Score=71.04 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=38.7
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHH-HHHHH
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKA-GLKEL 168 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~-~a~~l 168 (400)
.+.++.+.||||+||+++++++.+..+ .++.++++........|...+.. .++++
T Consensus 226 ~~~~vvvalSGGvDSsv~a~ll~~a~G--~~v~av~v~~g~~~~~e~~~~~~~la~~l 281 (525)
T 1gpm_A 226 GDDKVILGLSGGVDSSVTAMLLHRAIG--KNLTCVFVDNGLLRLNEAEQVLDMFGDHF 281 (525)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHHG--GGEEEEEEECSCSCTTHHHHHHHHHTTTT
T ss_pred cccceEEEecCCCCHHHHHHHHHHHhC--CCEEEEEEeCCCCCchHHHHHHHHHHHHh
Confidence 346899999999999999999988632 46888888764332345555543 45554
No 27
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=96.91 E-value=0.0019 Score=67.78 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCcc
Q 015804 78 MSVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPD 157 (400)
Q Consensus 78 e~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d 157 (400)
+..+++.+++.-.++.++.. ..-..+-+-|||||||+++++++.+..+ ...|.+++..........
T Consensus 278 ~~~~~~~~a~~~gl~dy~~k-------------~g~~~~vlglSGGiDSal~~~la~~alg-~~~v~~v~mp~~~ts~~t 343 (565)
T 4f4h_A 278 SVEAQVYRALVLGVRDYIGK-------------NGFPGAIIGLSGGVDSALVLAVAVDALG-AERVRAVMMPSRYTAGIS 343 (565)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------------TTCCCEEEECCSSHHHHHHHHHHHHHHC-GGGEEEEECCCTTCCHHH
T ss_pred chHHHHHHHHHHHHHHHHHH-------------cCCCcEEEecCCCccHHHHHHHHHHHhC-CccEEEEeccccccccch
Confidence 34467888888899999841 2334577889999999999999987764 246777765433322223
Q ss_pred HHHHHHHHHHHh
Q 015804 158 RISAKAGLKELR 169 (400)
Q Consensus 158 ~~~A~~~a~~l~ 169 (400)
...|+..++.++
T Consensus 344 ~~~a~~la~~lg 355 (565)
T 4f4h_A 344 TTDAADMARRVG 355 (565)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 457888999887
No 28
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=96.91 E-value=0.0029 Score=65.37 Aligned_cols=55 Identities=25% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.+..+.+.||||+||+++++++.+.. .++.++++...-....|...++..++.++
T Consensus 208 ~~~kvvvalSGGvDSsvla~ll~~~g---~~v~av~vd~g~~~~~e~~~v~~~~~~lg 262 (503)
T 2ywb_A 208 GKDRVLLAVSGGVDSSTLALLLAKAG---VDHLAVFVDHGLLRLGEREEVEGALRALG 262 (503)
T ss_dssp TTSEEEEEECSSHHHHHHHHHHHHHT---CEEEEEEEECSCSCTTHHHHHHHHHHHTT
T ss_pred cCccEEEEecCCcchHHHHHHHHHcC---CeEEEEEEeCCCCChHHHHHHHHHHHHhC
Confidence 34579999999999999999998873 46888887653222346777888888764
No 29
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=96.74 E-value=0.0038 Score=66.30 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhhhhhcccccCCCceEEEecCCcchHHHHHHH-------HhhcCCCCc---------
Q 015804 79 SVQRVLNALRKSVMQRSSLHTIFQAVICGRRQEEIAPVAVLFSGGLDSMILAALL-------NECLDPSYE--------- 142 (400)
Q Consensus 79 ~~~~l~~~L~~AV~~rl~~~~~~~~~~~~~~~~sd~pvgv~LSGGLDSs~Iaala-------~~~~~~~~~--------- 142 (400)
..+++...+...++.++. ......+-+.||||+|||++|+|+ .+..+ .+
T Consensus 282 ~~~~~~~~~~~~l~d~~~-------------~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG--~~~v~~~~~~~ 346 (634)
T 3ilv_A 282 KEFEFWEATSLGLFDYMR-------------KSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELG--LTAFLQKSNME 346 (634)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------HTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHTCG
T ss_pred cHHHHHHHHHHHHHHHHH-------------HhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhC--chhhhhhhhcc
Confidence 356777888888888873 124556888999999999999883 23322 12
Q ss_pred ------------------------eeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 143 ------------------------IDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 143 ------------------------i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
+.+...........+...|+.+++.|+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LG 397 (634)
T 3ilv_A 347 TLFDLPALQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIG 397 (634)
T ss_dssp GGCCSSCSSCTTSHHHHHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhC
Confidence 555555544433456778999999996
No 30
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=96.73 E-value=0.0042 Score=59.64 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=33.3
Q ss_pred CceEEEecCCcchHHHHHHHHhhc---C-CCC--ceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECL---D-PSY--EIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~---~-~~~--~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
..+.+.||||+||+++++++++.. + .+. .+.+++.-| ....|...|+.+++.++
T Consensus 47 ~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~--~~~~~~~dA~~~a~~lg 106 (285)
T 3dpi_A 47 RACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPY--GAQHDEADARRALAFVR 106 (285)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCS--CC---CHHHHHHHHHHC
T ss_pred CcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCC--CCHHHHHHHHHHHHHcC
Confidence 467899999999999987765431 1 112 244444333 22245667888888886
No 31
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=96.62 E-value=0.0041 Score=62.62 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=37.0
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCC-CccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQF-APDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~-~~d~~~A~~~a~~l~ 169 (400)
..+.+++|||+||++++.++.+.+ ..+.++++...... ..|...++..|+.+.
T Consensus 188 ~kvlvalSGGvDS~vll~ll~~~G---~~v~av~v~~~~~~~~~~~~~v~~~a~~l~ 241 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTMKRG---VSVEAVHFHSPPFTSERAKQKVIDLAQELT 241 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHBT---EEEEEEEEECTTTSCHHHHHHHHHHHHHHG
T ss_pred CeEEEEeCCCChHHHHHHHHHHcC---CcEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999988753 46777666532111 134566777888773
No 32
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=96.60 E-value=0.0092 Score=60.93 Aligned_cols=58 Identities=26% Similarity=0.081 Sum_probs=40.6
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcC-CCCceeEEEeecCCC-C--CccHHHHHHHHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLD-PSYEIDLLNVSFDGQ-F--APDRISAKAGLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~-~~~~i~~ftvgf~~~-~--~~d~~~A~~~a~~l~ 169 (400)
...++.|.+|||+||++++.++.+... .+..+.+.++.+.-. . ..|..+++..|+.++
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg 78 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR 78 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcC
Confidence 566899999999999999998876421 124677777765422 1 134567777888775
No 33
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=96.45 E-value=0.005 Score=55.97 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=39.6
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.++.|.+|||.||++++.++.+.. .++..+++...-....+..+++..++.++
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~---~~v~~v~vd~g~~~~e~~~~v~~~~~~~g 97 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR---PDIPVILTDTGYLFPETYRFIDELTDKLK 97 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS---TTCEEEEEECSCBCHHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC---CCCeEEEeeCCCCCHHHHHHHHHHHHHhC
Confidence 478999999999999999998875 35777777654322234567788888775
No 34
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=96.30 E-value=0.0088 Score=62.56 Aligned_cols=54 Identities=15% Similarity=0.017 Sum_probs=38.4
Q ss_pred CCceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHH-HHHHHHH
Q 015804 113 IAPVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISA-KAGLKEL 168 (400)
Q Consensus 113 d~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A-~~~a~~l 168 (400)
+..+-+.||||+||+.+++++.+..+ .++.++++...-....|...+ +..++++
T Consensus 255 ~~~vvvalSGGvDSsv~a~ll~~~~G--~~v~~v~vd~g~~~~~e~~~~~~~~~~~l 309 (556)
T 3uow_A 255 DHYVIAAMSGGIDSTVAAAYTHKIFK--ERFFGIFIDNGLLRKNEAENVYTFLKSTF 309 (556)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHHG--GGEEEEEEECSCSCTTHHHHHHHHHHHHC
T ss_pred CceEEEEcccCCCHHHHHHHHHHHhC--CeEEEEEEecCCCChHHHHHHHHHHHHhc
Confidence 66789999999999999999987642 468888876543223455444 4566665
No 35
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=95.89 E-value=0.021 Score=57.76 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=40.7
Q ss_pred CCCceEEEecCCcchHHHHHHHHhhcC--CCCceeEEEeecCCCCC--ccHHHHHHHHHHHh
Q 015804 112 EIAPVAVLFSGGLDSMILAALLNECLD--PSYEIDLLNVSFDGQFA--PDRISAKAGLKELR 169 (400)
Q Consensus 112 sd~pvgv~LSGGLDSs~Iaala~~~~~--~~~~i~~ftvgf~~~~~--~d~~~A~~~a~~l~ 169 (400)
...+|.|.+|||+||++++.++.+... .+.++.++++.+.-... .|..+++..++.++
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lg 73 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ 73 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcC
Confidence 556899999999999999998877532 12457777776532222 24567778888875
No 36
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=95.84 E-value=0.011 Score=55.18 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=36.1
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCC------CCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQ------FAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~------~~~d~~~A~~~a~~l~ 169 (400)
.+.+++|||.||+..++++.+.. ..+.++...++.. ...+...++..|+.++
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G---~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LG 63 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNR---FSVKFLVTMVSENEESYMYHTINANLTDLQARALG 63 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTT---CEEEEEEEEECC--------CCSSSHHHHHHHHHT
T ss_pred EEEEEecCcHHHHHHHHHHHHcC---CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcC
Confidence 68999999999999888887764 4565554334321 1234557888888886
No 37
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=95.79 E-value=0.026 Score=52.78 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=39.1
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.++.+.+|||.||++++.++.+... ++..+++...-....+..+++.++++++
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~~---~v~vv~idtg~~~~et~~~~~~~~~~~g 98 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIRP---DIPVILTDTGYLFPETYRFIDELTDKLK 98 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHST---TCEEEECCCSCBCHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhCC---CCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 3689999999999999999988752 5777776653222234567888888775
No 38
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=95.10 E-value=0.051 Score=52.91 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=38.0
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCC-CCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDP-SYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~-~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.+.+.+|||.||++++.++.+...+ ..++.++++...-.+.....+...++++++
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~et~~~v~~~~~~~g 103 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQMVEEMG 103 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHHHHHHHHHHHTTT
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 6789999999999999999887431 235777777643222233556777777664
No 39
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.053 Score=52.27 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=37.6
Q ss_pred CceEEEecCCcchHHHHHHHHhhcC-------------------CCCceeEEEeecCCCCCcc-HHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLD-------------------PSYEIDLLNVSFDGQFAPD-RISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~-------------------~~~~i~~ftvgf~~~~~~d-~~~A~~~a~~l~ 169 (400)
.++.+.+|||.||++++.++.+... ...++.++++..... .++ ..++..++++++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~-fpet~~fv~~~~~~yg 128 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET-FPTLENFVLETSERYC 128 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC-CHHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC-CHHHHHHHHHHHHHcC
Confidence 4799999999999999988876520 023567777654322 333 557777887764
No 40
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.076 Score=49.84 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=39.1
Q ss_pred ceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
++.+.+|||.||++++.++.+......++..+++...-....+..+++.++++++
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~~~~i~vv~iDtg~~~~et~~~v~~~~~~~g 97 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYY 97 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCBCHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhCccCCCeeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 6899999999999999999887631125677776543222234567788888875
No 41
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=94.01 E-value=0.029 Score=57.09 Aligned_cols=68 Identities=13% Similarity=-0.004 Sum_probs=51.0
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCCCc---C--C------------
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESGPI---P--A------------ 72 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~~~---~--~------------ 72 (400)
+.|...+.++||||+++|..++ .++|+.|+|||+++++.++.. + .
T Consensus 181 ~~~~~~~~~~~ASE~~al~~~~------------------~~~i~~l~pG~~~~i~~~~~~~~~~~~~~~~~~c~feyiy 242 (459)
T 1ao0_A 181 SIGMMGDAYVVASETCAFDVVG------------------ATYLREVEPGEMLIINDEGMKSERFSMNINRSICSMEYIY 242 (459)
T ss_dssp EEEEETTEEEEESSTHHHHHHT------------------CEEEEECCTTEEEEEETTEEEEEESCSSCCCCEEHHHHHT
T ss_pred EEEecCCEEEEEECchHHhcCC------------------CceEEEECCCEEEEEECCceEEEecCCCccccccceeeee
Confidence 4566678899999999998754 267999999999999887621 1 0
Q ss_pred ---CC--ChhHHHHHHHHHHHHHHHHHh
Q 015804 73 ---SV--PCSMSVQRVLNALRKSVMQRS 95 (400)
Q Consensus 73 ---~~--~~~e~~~~l~~~L~~AV~~rl 95 (400)
+. ...+.+.+.+..|.+.+.+.+
T Consensus 243 farp~s~~~~~~v~~~r~~lg~~La~~~ 270 (459)
T 1ao0_A 243 FSRPDSNIDGINVHSARKNLGKMLAQES 270 (459)
T ss_dssp TSCTTCEETTEEHHHHHHHHHHHHHHHH
T ss_pred ccCCcchhccHhHHHHHHHHHHHHHHhc
Confidence 11 134467788999999998876
No 42
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=91.78 E-value=0.35 Score=46.55 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=36.1
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
..+-++||| +||++.++++.+.+ ..+.+.++.+. ..+...++.+|++++
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~G---~~v~~v~~~~~---~~~~~~a~~~a~~l~ 228 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKRG---VEVIPVYIGKD---DKNLEKVRSLWNLLK 228 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHBT---CEEEEEEESCS---SHHHHHHHHHHHHHH
T ss_pred CcEEEEEeC-CcHHHHHHHHHhCC---CeEEEEEEEEC---HHHHHHHHHHHHHHh
Confidence 456789999 99999999988864 46766665522 245667888888884
No 43
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=91.35 E-value=0.58 Score=44.05 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=38.7
Q ss_pred CceEEEecCCcchHHHHHHHHhhcCCCCceeEEEeecCCCCCccHHHHHHHHHHHh
Q 015804 114 APVAVLFSGGLDSMILAALLNECLDPSYEIDLLNVSFDGQFAPDRISAKAGLKELR 169 (400)
Q Consensus 114 ~pvgv~LSGGLDSs~Iaala~~~~~~~~~i~~ftvgf~~~~~~d~~~A~~~a~~l~ 169 (400)
.++.+.+| |.||++++.++.+.. .++..+++...-.......+++.+++.++
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~---~~i~vv~iDtg~~~~et~~~v~~~~~~~g 106 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLN---RNVKVFSLDTGRLHPETYRFIDQVREHYG 106 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHC---TTCCEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEee-cHHHHHHHHHHHHhC---CCceEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence 47899999 999999999998874 35777777654332234567888888875
No 44
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=91.23 E-value=0.12 Score=47.82 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=32.6
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
+.|..++.++||||+++|+.++. .+..||||++++++.++
T Consensus 179 ~~~~~~~~~~~aSE~~al~~~~~-------------------~~~~l~pG~~~~i~~~~ 218 (240)
T 1xff_A 179 VIGLGMGENFIASDQLALLPVTR-------------------RFIFLEEGDIAEITRRS 218 (240)
T ss_dssp EEEECSSCEEEESSGGGTTTTCS-------------------EEEECCTTCEEEECSSC
T ss_pred EEEEeCCEEEEEECHHHHHhhCC-------------------eEEEECCCEEEEEECCe
Confidence 44556678999999999987652 47789999999998776
No 45
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=86.65 E-value=2.5 Score=40.67 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=34.4
Q ss_pred ceEEEecCCcchHHHHHHHHhhc-------------------CCCCceeEEEeecCCCCCccH-HHHHHHHHHHh
Q 015804 115 PVAVLFSGGLDSMILAALLNECL-------------------DPSYEIDLLNVSFDGQFAPDR-ISAKAGLKELR 169 (400)
Q Consensus 115 pvgv~LSGGLDSs~Iaala~~~~-------------------~~~~~i~~ftvgf~~~~~~d~-~~A~~~a~~l~ 169 (400)
.+++.+|||-||+++.-|+.+.. .+..++..+.+... -..+|. .+...++++++
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG-~~FpET~ef~d~~~~~yg 133 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHD-DTFKTLENFIEETSLRYS 133 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCT-TCCHHHHHHHHHHHHHTT
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCC-CCCHHHHHHHHHHHHHhC
Confidence 58999999999999998887652 00125666665533 234564 46667777775
No 46
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=85.15 E-value=0.41 Score=49.18 Aligned_cols=35 Identities=11% Similarity=-0.023 Sum_probs=30.0
Q ss_pred CEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 16 KHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 16 ~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
+.++||||.++|..++ ++.|+.|+||++++++.++
T Consensus 202 ~~~~~ASE~~al~~~~------------------~~~v~~l~PGe~v~i~~~g 236 (504)
T 1ecf_A 202 TEYMVASESVALDTLG------------------FDFLRDVAPGEAIYITEEG 236 (504)
T ss_dssp EEEEEESSTHHHHHHT------------------CEEEEECCTTEEEEEETTC
T ss_pred eEEEEEeCchHhhccC------------------ccEEEECCCCeEEEEeCCC
Confidence 3689999999998753 5679999999999998766
No 47
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=76.68 E-value=1.4 Score=46.26 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=32.3
Q ss_pred hhcccCCEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 10 FVGELRKHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 10 ~~~~~~~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
++|..++.++||||+++|+.++. .+..|+||++++++.++
T Consensus 179 ~~g~~~~~~~~aSe~~al~~~~~-------------------~~~~l~~G~i~~i~~~~ 218 (608)
T 2bpl_A 179 VIGLGMGENFIASDQLALLPVTR-------------------RFIFLEEGDIAEITRRS 218 (608)
T ss_dssp EEEECSSCEEEESSGGGTTTTCC-------------------EEEECCTTCEEEECSSC
T ss_pred EEEEeCCeEEEEechHHHHhcCC-------------------eEEEECCCeEEEEECCe
Confidence 45556678999999999987643 46789999999998766
No 48
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=40.66 E-value=15 Score=34.43 Aligned_cols=38 Identities=5% Similarity=-0.129 Sum_probs=26.9
Q ss_pred hhcccC---CEEEEeccchhHHcccCCCCCCCHhHHHHHhhhhhcCceeeCCCcEEEEcCCC
Q 015804 10 FVGELR---KHEWTNAMLMELIKWERIFVEPTTENCGFSHCETHLGEHNIHSACSDIISESG 68 (400)
Q Consensus 10 ~~~~~~---~~~~FaSeikaLl~~~~~~~~~d~~~l~~~l~T~~~gI~~l~pG~~l~i~~~~ 68 (400)
+.|... +.++||||. +... -+.++.|+||++++++.++
T Consensus 211 l~~~~~~~~~~~~vASE~---l~~~------------------~~~~~~v~pGeiv~i~~~~ 251 (274)
T 3mdn_A 211 VYYRYSHARQGWAVVSEP---LETD------------------EGDWTELRPGRMLTIGAEG 251 (274)
T ss_dssp CEEEEETTTTEEEEESSC---C--C------------------CSCCEECCSSEEEEEETTE
T ss_pred EEEEEeCCCCEEEEEecc---cccC------------------CceEEEECcCEEEEEeCCe
Confidence 445544 789999999 2211 1347889999999999877
Done!