Citrus Sinensis ID: 015805

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
Protein Sequence
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEEEcccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEEcEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEcccEEEcccccccccEcccccccEEccEEEEccEEEEEEcccccccccccccHHHHHccccccccccccccccccccHHHccccccccccccccccccccccccccccccHcccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccHHHEEEcccccccHHHHEHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHccccHHHHHHHHHHc
Coil and Loop (DISEMBL)
mnftttfrgnlsllphcssccdirfqpilaslhvtrpvrcrlgnfssykvSRFCRKKRELICRVtdtqtepdsnndkekevhdgqenqpatasdqeddksqpdsqldsqpqvenqingndvadtkggvqddgngevasgsplpgvkpqqldeyiripkETIDILkdqvfgfdtffvtnqepyeggvlfkgnlrgqAAKTYEKISTRMKNKFGDQYKLFLLvnpeddkpvavvvprktlqpettavpewfaaGAFGLVTVFTLLLRNVPALQSNLlstfdnlnlltnglpGALVTALVIGVHELGHILAAKStgvelgvpyfvpswqigsfgaITRIRNIVSKREDLLKVaaagplagfSLGFVLFLVGfifppsdgigivVDASVfhesflaggfgkqli
Flexible Loop (DISEMBL)
mnftttfrgnlsllPHCSSCCDIRFQPILASLHVTRPVrcrlgnfssykvsrfcrkkrelicrvtdtqtepdsnndkekevhdgqenqpatasdqeddksQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGevasgsplpgvkpqqLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPyeggvlfkgnlrgQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESflaggfgkqli
Low Complexity Region (SEG)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEddksqpdsqldsqpqVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAgfslgfvlflvgfifPPSDGIGIVVDASVFHESFLAGGFGKQLI
Disordered region (IsUnstruct)
****TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVT************************************************************************************LDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGF*****
Disordered Region (DISOPRED)
****TTFRGNLSLLPHCSSCCDIRFQPILA***********************************************************************************************************************************DILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKT*****TAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI
Disordered Region (DISEMBL)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDT********************************************VENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI
Disordered Region (DISPRO)
*********NLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTD*******************************************************************************KPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
255571887	525	metalloendopeptidase, putative [Ricinus	0.977	0.744	0.717	1e-157
359486422	543	PREDICTED: uncharacterized protein LOC10	0.985	0.725	0.693	1e-152
449525585	364	PREDICTED: uncharacterized protein LOC10	0.902	0.991	0.697	1e-141
334187443	524	ethylene-dependent gravitropism-deficien	0.972	0.742	0.646	1e-138
42573279	527	ethylene-dependent gravitropism-deficien	0.972	0.738	0.649	1e-138
356501144	523	PREDICTED: uncharacterized protein LOC10	0.95	0.726	0.67	1e-135
297810677	558	peptidase M50 family protein [Arabidopsi	0.972	0.697	0.603	1e-134
449441596	456	PREDICTED: uncharacterized protein LOC10	0.89	0.780	0.668	1e-134
356551482	520	PREDICTED: uncharacterized protein LOC10	0.945	0.726	0.661	1e-133
15239226	556	ethylene-dependent gravitropism-deficien	0.972	0.699	0.605	1e-133

>gi|255571887|ref|XP_002526886.1| metalloendopeptidase, putative [Ricinus communis] gi|223533785|gb|EEF35517.1| metalloendopeptidase, putative [Ricinus communis]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/403 (71%), Positives = 327/403 (81%), Gaps = 12/403 (2%)

Query: 1   MNFTTTFRGNLS--LLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKR 58
           M+    FRGN +  LLP  S C          S+   R +RCRL +F  Y VSRF  +KR
Sbjct: 1   MSLIAAFRGNFTPLLLPLSSHCSSCTSS---VSVTSQRKLRCRLRDFKLYHVSRFV-EKR 56

Query: 59  ELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQING 118
            ++CRVT+T+TEPD NNDKEKEVH+G E  P T S       Q  S+ DSQP+V NQI+ 
Sbjct: 57  VIVCRVTETETEPDGNNDKEKEVHEGGETPPTTGS-----AGQVSSESDSQPRVVNQISN 111

Query: 119 ND-VADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVT 177
           ND   +++   QD     VASGSPLPGVK QQLDE  RIPK TIDILKDQVFGFDTFFVT
Sbjct: 112 NDEQTNSESSTQDADAENVASGSPLPGVKTQQLDESFRIPKGTIDILKDQVFGFDTFFVT 171

Query: 178 NQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKT 237
           +QEPYEGGVLFKGNLRG+AAK+YEK++ RM+NKFGD+Y+LFLLVNPEDD+PVAVVVPRKT
Sbjct: 172 SQEPYEGGVLFKGNLRGKAAKSYEKLTNRMQNKFGDEYRLFLLVNPEDDRPVAVVVPRKT 231

Query: 238 LQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALV 297
           LQPETTAVPEWFAAGAFGLVT+FTLLLRNVPALQSNLLSTFDNL LL +GL GAL+TAL+
Sbjct: 232 LQPETTAVPEWFAAGAFGLVTIFTLLLRNVPALQSNLLSTFDNLELLKDGLSGALITALI 291

Query: 298 IGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAG 357
           +GVHE+GHIL AKS+ V+LGVPYFVPSWQIGSFGAITRI NIV KREDLLKVAAAGPLAG
Sbjct: 292 LGVHEVGHILVAKSSDVKLGVPYFVPSWQIGSFGAITRIVNIVPKREDLLKVAAAGPLAG 351

Query: 358 FSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI 400
           F+LGFVLFLVGF+ PPSDGIG+VVDASVFHESFLAGG  K L+
Sbjct: 352 FALGFVLFLVGFVLPPSDGIGLVVDASVFHESFLAGGIAKLLL 394

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486422|ref|XP_002271131.2| PREDICTED: uncharacterized protein LOC100267324 [Vitis vinifera] gi|297736633|emb|CBI25504.3| unnamed protein product [Vitis vinifera]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 290/418 (69%), Positives = 334/418 (79%), Gaps = 24/418 (5%)

Query: 1   MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRF-CRKKRE 59
           MNF  TFRGN +   HCSSCCD+RFQP L+S  V R  RCR+ N   ++VSR   R++  
Sbjct: 1   MNFPATFRGNFNPFSHCSSCCDLRFQPFLSSPIVWRQKRCRISNLQVHQVSRLGSRRRPR 60

Query: 60  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQ---- 115
           ++C VT+T+TEP++NND+EK  H+     P+      D   Q D QLDSQP V +Q    
Sbjct: 61  IVCGVTETETEPENNNDEEK-AHENGGMPPSI-----DSTVQNDPQLDSQPLVADQDKDQ 114

Query: 116 ------INGNDVADT-------KGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETID 162
                 +NG+++ ++       +G VQD  N EVASGSPLPGVKPQ LDE IRIPKETID
Sbjct: 115 FVHNAMLNGDNMVNSDNQETEAQGNVQDSENLEVASGSPLPGVKPQVLDESIRIPKETID 174

Query: 163 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVN 222
           ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRG+AAK+YEKI+ RM+++FGD+YKLFLL+N
Sbjct: 175 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGKAAKSYEKITIRMQDRFGDKYKLFLLIN 234

Query: 223 PEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLN 282
           PEDDKPVAVVVPR TLQPETTAVPEWFAAGAFGLVTVFTL LRNVPALQSNLLS FDNLN
Sbjct: 235 PEDDKPVAVVVPRNTLQPETTAVPEWFAAGAFGLVTVFTLFLRNVPALQSNLLSVFDNLN 294

Query: 283 LLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSK 342
           LL +GLPGALVTALV+G HE+ HIL A+STG++LGVPYFVPSWQIGSFGAITRI NIV  
Sbjct: 295 LLMDGLPGALVTALVLGTHEISHILVARSTGIKLGVPYFVPSWQIGSFGAITRILNIVPN 354

Query: 343 REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI 400
           REDLLKVAAAGP+AGFSLG VL L+GF+ PPSDGIG+VVDASVFHES LAGG  K L+
Sbjct: 355 REDLLKVAAAGPIAGFSLGLVLLLLGFLLPPSDGIGVVVDASVFHESLLAGGIAKLLL 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525585|ref|XP_004169797.1| PREDICTED: uncharacterized protein LOC101225644, partial [Cucumis sativus]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/374 (69%), Positives = 301/374 (80%), Gaps = 13/374 (3%)

Query: 23  IRFQPILASLHVTR-PVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEV 81
           +RF P  A     R   R R  +    +VS   R KR + C+VT+TQTEPD NNDKE++ 
Sbjct: 1   MRFNPCFAPFTNFRDQQRIRHSSLKLCQVS--SRGKRGIACKVTETQTEPDGNNDKEEDD 58

Query: 82  HDGQENQPATASDQEDDKSQPDSQ-LDSQPQVENQINGNDVADTKGGVQDDGNGEVASGS 140
             G + QP+ +    +DK Q DSQ +D    VEN+         +G +QD  N EVASGS
Sbjct: 59  SKGGD-QPSFSDSAAEDKFQLDSQAVDEVNIVENK--------DQGDIQDIDNVEVASGS 109

Query: 141 PLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTY 200
           PLPG+KPQQLDE  RIP+ET++ILK+QVFGFDTFFVT+Q+PYEGGVLFKGNLRG+AAK+Y
Sbjct: 110 PLPGLKPQQLDESFRIPRETVEILKNQVFGFDTFFVTSQDPYEGGVLFKGNLRGEAAKSY 169

Query: 201 EKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVF 260
           EKI+ RM++ FGD YKLFLL+NPEDDKPVAVVVPRKTLQPETTAVPEWFAA AFGLVTVF
Sbjct: 170 EKITRRMQDTFGDVYKLFLLINPEDDKPVAVVVPRKTLQPETTAVPEWFAAAAFGLVTVF 229

Query: 261 TLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPY 320
           TLLLRNVPALQSNLLSTFDNL LL +GLPGA VTALV+GVHELGHIL A+  GV+ G+PY
Sbjct: 230 TLLLRNVPALQSNLLSTFDNLELLKDGLPGAFVTALVLGVHELGHILVARDVGVKFGIPY 289

Query: 321 FVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIV 380
           FVPSWQIGSFGAITRI NIV KREDLLKVA AGPLAGFS+GF+L++ GFI PPSDGIG++
Sbjct: 290 FVPSWQIGSFGAITRILNIVPKREDLLKVALAGPLAGFSVGFLLYIFGFILPPSDGIGVI 349

Query: 381 VDASVFHESFLAGG 394
           VDASVFHESFLAGG
Sbjct: 350 VDASVFHESFLAGG 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187443|ref|NP_001190232.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003536|gb|AED90919.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/402 (64%), Positives = 311/402 (77%), Gaps = 13/402 (3%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRE 59
           MN    +FRGN  +L  CSSCC ++FQP +A+   T  +       S  K      +KRE
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAA---TSSLNFGQTGTSRRKKDLKLERKRE 57

Query: 60  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGN 119
            + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+  GN
Sbjct: 58  TLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEAPGN 109

Query: 120 DVADTKGGVQDDGNG-EVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTN 178
           +  +       DG+  EV+SGSPLPGV P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+
Sbjct: 110 EEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDTFFVTS 169

Query: 179 QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTL 238
           QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L
Sbjct: 170 QEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSL 229

Query: 239 QPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVI 298
           +PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVTALV+
Sbjct: 230 EPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTALVL 289

Query: 299 GVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF 358
           GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGF
Sbjct: 290 GVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGF 349

Query: 359 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI 400
           SLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG  K L+
Sbjct: 350 SLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLL 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573279|ref|NP_974736.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003534|gb|AED90917.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/405 (64%), Positives = 314/405 (77%), Gaps = 16/405 (3%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRFCRK 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       K+ R  RK
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSR--RKKDLKLERVFRK 58

Query: 57  KRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQI 116
            RE + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+ 
Sbjct: 59  -RETLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEA 109

Query: 117 NGNDVADTKGGVQDDGNG-EVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFF 175
            GN+  +       DG+  EV+SGSPLPGV P QLD+ +R+PKETIDIL+ QVFGFDTFF
Sbjct: 110 PGNEEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDTFF 169

Query: 176 VTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPR 235
           VT+QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR
Sbjct: 170 VTSQEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPR 229

Query: 236 KTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTA 295
           ++L+PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVTA
Sbjct: 230 RSLEPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTA 289

Query: 296 LVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPL 355
           LV+GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPL
Sbjct: 290 LVLGVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPL 349

Query: 356 AGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI 400
           AGFSLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG  K L+
Sbjct: 350 AGFSLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLL 394

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501144|ref|XP_003519388.1| PREDICTED: uncharacterized protein LOC100778800 [Glycine max]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 268/400 (67%), Positives = 312/400 (78%), Gaps = 20/400 (5%)

Query: 5   TTFRGNLSL-LPHCSSC--CDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELI 61
           + FRGNL + L  C+SC   D+RFQ      H     RCR   F   +  R  R+ R + 
Sbjct: 9   SAFRGNLLVPLSRCTSCFKLDLRFQHSDGFRHS----RCRRSLFKLIRDPRSSRR-RGIA 63

Query: 62  CRVTDTQTEPDSNND-KEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGND 120
           C VT    EPD+ +D KEKE     E      S ++      D++  ++   EN+   +D
Sbjct: 64  CSVT----EPDNGSDEKEKEADKNGETLRVEDSSEQSIPPPVDAEQLNEFSDENK-GQSD 118

Query: 121 VADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQE 180
           V +      DD N EVASGSPLPGVKPQ+LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+
Sbjct: 119 VQN-----MDDSN-EVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQD 172

Query: 181 PYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQP 240
           PYEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPEDDKPVAVVVPR TLQP
Sbjct: 173 PYEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDDKPVAVVVPRTTLQP 232

Query: 241 ETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGV 300
           ETTAVPEWFAAG+FGL+TVFTLLLRNVPALQS+LLSTFDNLNLL +GLPGALVTAL++GV
Sbjct: 233 ETTAVPEWFAAGSFGLITVFTLLLRNVPALQSDLLSTFDNLNLLKDGLPGALVTALILGV 292

Query: 301 HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSL 360
           HELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++L
Sbjct: 293 HELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYAL 352

Query: 361 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI 400
           G +L L+GF+ PPSDGIG+VVDASVFHESFLAGG  K L+
Sbjct: 353 GLLLLLLGFVLPPSDGIGVVVDASVFHESFLAGGIAKLLL 392

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810677|ref|XP_002873222.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319059|gb|EFH49481.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/436 (60%), Positives = 317/436 (72%), Gaps = 47/436 (10%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHV-----TRPVRCRLGNFSSYKVSRFC 54
           MN    +FRGN  +L  CSS C ++FQP +A+        TR  R +     + K+ R  
Sbjct: 1   MNLAVASFRGNFGVLSQCSSYCSLQFQPFVAATSSLNFGQTRTSRRK----KNLKLERVF 56

Query: 55  RKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 114
           RK RE + RVT+TQTEP+ NND++    +G+E      +  +D  +Q  ++L+SQ  + N
Sbjct: 57  RK-RETLVRVTETQTEPEGNNDEDNNGEEGKE------TSADDPPTQIPTELNSQSTIVN 109

Query: 115 QINGNDVADTKGGVQDDGNG-EVASGSPLPGV---------------------------- 145
           +  GN+  +       DG+  EV+SGSPLPGV                            
Sbjct: 110 EAPGNEEENKAQLSSQDGDKLEVSSGSPLPGVNVSITNNVKYKGDSLMLSIYLSFIKSCC 169

Query: 146 -KPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKIS 204
            +P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI 
Sbjct: 170 EQPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGEPAKSYEKIK 229

Query: 205 TRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLL 264
           TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL L
Sbjct: 230 TRMENNFGDQYKLFLLSNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFL 289

Query: 265 RNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPS 324
           RNVPALQS+LLS FDNL LL +GLPGALVT LV+GVHELGHIL A S G++LGVP+FVPS
Sbjct: 290 RNVPALQSDLLSAFDNLELLKDGLPGALVTTLVLGVHELGHILVANSLGIKLGVPFFVPS 349

Query: 325 WQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDAS 384
           WQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDAS
Sbjct: 350 WQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLLGLFVPPSDGIGVVVDAS 409

Query: 385 VFHESFLAGGFGKQLI 400
           VFHESFLAGG  K L+
Sbjct: 410 VFHESFLAGGIAKLLL 425

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441596|ref|XP_004138568.1| PREDICTED: uncharacterized protein LOC101217814 [Cucumis sativus]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 254/380 (66%), Positives = 294/380 (77%), Gaps = 24/380 (6%)

Query: 23  IRFQPILASLHVTR-PVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEV 81
           +RF P  A     R   R R  +    +VS   R KR + C+VT+TQTEPD NNDKE++ 
Sbjct: 1   MRFNPCFAPFTNFRDQQRIRHSSLKLCQVS--SRGKRGIACKVTETQTEPDGNNDKEEDD 58

Query: 82  HDGQENQPATASDQEDDKSQPDSQ-LDSQPQVENQINGNDVADTKGGVQDDGNGEVASGS 140
             G + QP+ +    +DK Q DSQ +D    VEN+         +G +QD  N EVASGS
Sbjct: 59  SKGGD-QPSFSDSAAEDKFQLDSQAVDEVNIVENK--------DQGDIQDIDNVEVASGS 109

Query: 141 PLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTY 200
           PLPG+KPQQLDE  RIP+ET++ILK+QVFGFDTFFVT+Q+PYEGGVLFKGNLRG+AAK+Y
Sbjct: 110 PLPGLKPQQLDESFRIPRETVEILKNQVFGFDTFFVTSQDPYEGGVLFKGNLRGEAAKSY 169

Query: 201 EKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVF 260
           EKI+ RM++ FGD YKLFLL+NPEDDKPVAVVVPRKTLQPETTAVPEWFAA AFGLVTVF
Sbjct: 170 EKITRRMQDTFGDVYKLFLLINPEDDKPVAVVVPRKTLQPETTAVPEWFAAAAFGLVTVF 229

Query: 261 TLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPY 320
           TLLLRNVPALQSNLLSTFDNL LL +GLPGA VTALV+GVHELGHIL A+  GV+ G+PY
Sbjct: 230 TLLLRNVPALQSNLLSTFDNLELLKDGLPGAFVTALVLGVHELGHILVARDAGVKFGIPY 289

Query: 321 FVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIV 380
           FVPSWQIGSFGAITRI NIV KREDLLKVA AGPLAGFS+GF+L+++GFI PP       
Sbjct: 290 FVPSWQIGSFGAITRILNIVPKREDLLKVALAGPLAGFSVGFLLYILGFILPP------- 342

Query: 381 VDASVFHESFLAGGFGKQLI 400
               VFHESFLAGG  K L+
Sbjct: 343 ----VFHESFLAGGIAKLLL 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551482|ref|XP_003544103.1| PREDICTED: uncharacterized protein LOC100816506 [Glycine max]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 264/399 (66%), Positives = 315/399 (78%), Gaps = 21/399 (5%)

Query: 5   TTFRGNLSL-LPHCSSCC--DIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELI 61
           ++FRGNL + L  C+SC   D+R Q      H+ RP       +SS+K+ R  R+ R + 
Sbjct: 9   SSFRGNLLVPLSRCTSCLELDLRIQHSEGFRHL-RP------RWSSFKLIRNPRR-RVIA 60

Query: 62  CRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDV 121
           C VT+     + +++KEKE     E  P   S ++      D++  ++   EN+   +DV
Sbjct: 61  CSVTEPH---NGSDEKEKEADKNGETLPLEDSSEQSIPPPVDAEQINEFSDENK-GQSDV 116

Query: 122 ADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEP 181
            +      DD N EVASGSPLPGVKPQ+LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+P
Sbjct: 117 QN-----MDDSN-EVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQDP 170

Query: 182 YEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPE 241
           YEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPED+ PVAVVVPR TLQPE
Sbjct: 171 YEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDNMPVAVVVPRTTLQPE 230

Query: 242 TTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVH 301
           TTAVPEWFAAG+FGLVTVFTLLLRNVP+LQS+LLSTFDNLNLL +GLPGALVTAL++GVH
Sbjct: 231 TTAVPEWFAAGSFGLVTVFTLLLRNVPSLQSDLLSTFDNLNLLKDGLPGALVTALILGVH 290

Query: 302 ELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG 361
           ELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++LG
Sbjct: 291 ELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYALG 350

Query: 362 FVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFGKQLI 400
            +L L+GFI PPSDGIG+VVDASVFHESFLAGG  K L+
Sbjct: 351 LLLLLLGFILPPSDGIGVVVDASVFHESFLAGGIAKLLL 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239226|ref|NP_196193.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|9759099|dbj|BAB09668.1| unnamed protein product [Arabidopsis thaliana] gi|332003535|gb|AED90918.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/434 (60%), Positives = 315/434 (72%), Gaps = 45/434 (10%)

Query: 1   MNFTT-TFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRFCRK 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       K+ R  RK
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSR--RKKDLKLERVFRK 58

Query: 57  KRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQI 116
            RE + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+ 
Sbjct: 59  -RETLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEA 109

Query: 117 NGNDVADTKGGVQDDGNG-EVASGSPLPGV-----------------------------K 146
            GN+  +       DG+  EV+SGSPLPGV                             +
Sbjct: 110 PGNEEENKAQFSSQDGDKLEVSSGSPLPGVNVSIIIHVIYKDDSIMFSGCLSFIKSCCEQ 169

Query: 147 PQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTR 206
           P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI TR
Sbjct: 170 PLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTR 229

Query: 207 MKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRN 266
           M+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LRN
Sbjct: 230 MENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLRN 289

Query: 267 VPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQ 326
           VPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSWQ
Sbjct: 290 VPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQ 349

Query: 327 IGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVF 386
           IGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDASVF
Sbjct: 350 IGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASVF 409

Query: 387 HESFLAGGFGKQLI 400
           HESFLAGG  K L+
Sbjct: 410 HESFLAGGIAKLLL 423

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
TAIR|locus:2166389	556	EGY2 "ethylene-dependent gravi	0.637	0.458	0.772	4.5e-122
TAIR|locus:2182372	548	EGY1 "ETHYLENE-DEPENDENT GRAVI	0.192	0.140	0.419	1.3e-18
TAIR|locus:2030938	573	EGY3 "ETHYLENE-DEPENDENT GRAVI	0.47	0.328	0.269	4e-11

TAIR|locus:2166389 EGY2 "ethylene-dependent gravitropism-deficient and yellow-green-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1026 (366.2 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
 Identities = 197/255 (77%), Positives = 221/255 (86%)

Query:   146 KPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKIST 205
             +P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI T
Sbjct:   169 QPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKT 228

Query:   206 RMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLR 265
             RM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LR
Sbjct:   229 RMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLR 288

Query:   266 NVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSW 325
             NVPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSW
Sbjct:   289 NVPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSW 348

Query:   326 QIGSFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIGIVVDASV 385
             QIGSFGAITRI+NIV+KREDLLKVAAAGPLA               PPSDGIG+VVDASV
Sbjct:   349 QIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASV 408

Query:   386 FHESFLAGGFGKQLI 400
             FHESFLAGG  K L+
Sbjct:   409 FHESFLAGGIAKLLL 423

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2182372 EGY1 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 34/81 (41%), Positives = 51/81 (62%)

Query:   280 NLNLLTNGLPGALVTAL-VIGV---HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR 335
             ++ LL   +  AL  A  V+G+   HELGH LAA    V+L +PYF+P+  +GSFGAIT+
Sbjct:   286 DMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPYFIPNITLGSFGAITQ 345

Query:   336 IRNIVSKREDLLKVAAAGPLA 356
              ++I+  R   + ++ AGP A
Sbjct:   346 FKSILPDRSTKVDISLAGPFA 366

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0043157 "response to cation stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

TAIR|locus:2030938 EGY3 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
 Identities = 55/204 (26%), Positives = 97/204 (47%)

Query:   159 ETIDILK-DQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKL 217
             + +D+ K    FGFDTFF T+   +  G +F GNLR    +   K+  ++    G    +
Sbjct:   176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query:   218 FLLVNPEDD--KPVAVVVPRKT--LQPETTAVPE-WFAAGAFGL-VTVF-TLLLRNVPAL 270
             + +    ++  K V +V P+    LQ E+T +   W    A  L VT F T+ L +   L
Sbjct:   236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query:   271 QSNLLSTFDNLNLLTNGLP--GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIG 328
             + +  +TFD+   + N +P  G  ++  ++GV E+   + A   GV+L   + VPS   G
Sbjct:   296 KPD--ATFDDY--IANVVPLFGGFLS--ILGVSEIATRVTAARHGVKLSPSFLVPSNWTG 349

Query:   329 SFGAITRIRNIVSKREDLLKVAAA 352
               G +    +++  ++ L  +  A
Sbjct:   350 CLGVMNNYESLLPNKKALFDIPVA 373

GO:0005739 "mitochondrion" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.85	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	400
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	9e-24
cd05709	180	cd05709, S2P-M50, Site-2 protease (S2P) class of z	5e-12
pfam02163	206	pfam02163, Peptidase_M50, Peptidase family M50	2e-10
cd06161	208	cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease	3e-10
cd06164	227	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 prote	8e-08
cd06159	263	cd06159, S2P-M50_PDZ_Arch, Uncharacterized Archaea	4e-04
cd06163	182	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 p	0.003

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 96.9 bits (242), Expect = 9e-24
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 253 AFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKST 312
              ++T+ T LL        +      N  LL  GLP AL    ++G+HE+GH LAA+  
Sbjct: 2   LLLVLTLLTTLL---VGAWLSGNDVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRH 58

Query: 313 GVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIF 371
           GV+  +PYF+P   IG+FGA  R+R+ +  R+ L  +A AGPLAG  L   + ++G   
Sbjct: 59  GVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIGLAV 117

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 63.8 bits (156), Expect = 5e-12
 Identities = 31/121 (25%), Positives = 41/121 (33%), Gaps = 16/121 (13%)

Query: 288 LPGALVTALVIGVHELGHILAAKSTG--VELGVPYFVPSWQIGS---------FGAITRI 336
           L   L   + + VHELGH L A+  G  V      F  +               G   + 
Sbjct: 1   LAFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKP 60

Query: 337 -----RNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 391
                R     R   L VA AGPLA   L  +L L+  +        +   AS    + L
Sbjct: 61  VGENPRAFKKPRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPPAPVGQAASSGLANLL 120

Query: 392 A 392
           A
Sbjct: 121 A 121

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-binding proteins (SREBPs) from membranes of the ER. These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD superfamily. Prokaryotic S2P/M50 homologs have been shown to regulate stress responses, sporulation, cell division, and cell differentiation. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses, and in Bacillus subtilis, the S2P homolog SpoIVFB is involved in the pro-sigmaK pathway of spore formation. Some of the subfamilies within this hierarchy contain one or two PDZ domain insertions, with putative regulatory roles, such as the inhibition of substrate cleavage as seen by the RseP PDZ domain. Length = 180

>gnl|CDD|216910 pfam02163, Peptidase_M50, Peptidase family M50

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 32/117 (27%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 289 PGALVTALVIGVHELGHILAAKSTGVE-----------------LGVPYFVPSWQIGSFG 331
              L   + + VHELGH L A+  GV+                     Y +      +FG
Sbjct: 1   AFILALLISVVVHELGHALVARRFGVKVERFAIGFGPLLFKHLDGATEYTIRLMFGWAFG 60

Query: 332 AITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFP---PSDGIGIVVDASV 385
           A    R         L ++ AGPLA F L  +LF +  + P       IG VV  S 
Sbjct: 61  APIERRFKKKSPWQRLLISLAGPLANFILALLLFALLLLLPGIPVPPVIGGVVVGSS 117

Length = 206

>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 287 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 346
           GL  AL+  L + +HELGH L A+  G+       V S  +  FG +  +       ++ 
Sbjct: 30  GLLEALLLFLSVLLHELGHALVARRYGIR------VRSITLLPFGGVAELEEEPETPKEE 83

Query: 347 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVV 381
             +A AGPL    L  + +L+  + P    +  ++
Sbjct: 84  FVIALAGPLVSLLLAGLFYLLYLLLPGGGPLSSLL 118

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. Length = 208

>gnl|CDD|100085 cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 269 ALQSNLLSTFDNLNLLTNGLPGALVTALV---IGVHELGHILAAKSTGVELGVPYFVPSW 325
           +    +             L G     L+   + +HELGH L A+  G+       V S 
Sbjct: 24  SFGPGVFPAVPPALGAVAWLLGLAAALLLFASVLLHELGHSLVARRYGIP------VRSI 77

Query: 326 QIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDG 376
            +  FG + R+            +A AGPL    L  +  L+    P S  
Sbjct: 78  TLFLFGGVARLEREPETPGQEFVIAIAGPLVSLVLALLFLLLSLALPGSGA 128

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 227

>gnl|CDD|100080 cd06159, S2P-M50_PDZ_Arch, Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 35/98 (35%)

Query: 291 ALVTALVIGVHELGHILAAKSTGVE--------LGVPYFVPSWQIGSF---------GAI 333
           ALV  +V  VHEL H + A+  G++        L +P        G+F          A 
Sbjct: 116 ALVVGVV--VHELSHGILARVEGIKVKSGGLLLLIIP-------PGAFVEPDEEELNKAD 166

Query: 334 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIF 371
            RIR         L++ AAG  A F +  + F + F++
Sbjct: 167 RRIR---------LRIFAAGVTANFVVALIAFALFFLY 195

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present. Length = 263

>gnl|CDD|100084 cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 38.2 bits (90), Expect = 0.003
 Identities = 37/118 (31%), Positives = 46/118 (38%), Gaps = 38/118 (32%)

Query: 288 LPGALVTALVIGVHELGHILAAKSTGVELGVPYF-------VPSWQIG----SFGAI--- 333
           L   LV  ++I VHELGH L AK  GV   V  F       + S++ G    S  AI   
Sbjct: 2   LAFILVLGILIFVHELGHFLVAKLFGV--KVEEFSIGFGPKLFSFKKGETEYSISAIPLG 59

Query: 334 -----------------TRIRNIVSKREDLLK---VAAAGPLAGFSLGFVLFLVGFIF 371
                               R+  SK   + +   +  AGPLA F L  VLF V   F
Sbjct: 60  GYVKMLGEDPEEEADPEDDPRSFNSKP--VWQRILIVFAGPLANFLLAIVLFAVLLSF 115

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA. Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	400
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	99.72
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	99.67
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	99.53
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.42
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	99.42
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	99.33
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.3
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	99.27
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	99.11
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	98.96
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	98.68
PF13398	200	Peptidase_M50B: Peptidase M50B-like	97.83
COG0750	375	Predicted membrane-associated Zn-dependent proteas	97.66
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	97.04
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	96.42
PF11667	111	DUF3267: Protein of unknown function (DUF3267); In	87.39

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.72  E-value=1.7e-17  Score=153.09  Aligned_cols=111  Identities=39%  Similarity=0.644  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhhccccccccccccccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCcccccceeeeeeeEE
Q 015805          254 FGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI  333 (400)
Q Consensus       254 l~L~Tl~Tl~~~g~p~L~p~~~~~~~~~~~l~~glp~aL~l~~iLliHElGH~laARr~GVkvs~P~FIP~i~Lg~fGg~  333 (400)
                      ++++|+.+....+.-....   +..+++..+..++++++++++++++||+||+++||++|+|+..+.++|.+.+|++|++
T Consensus         3 ~~~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~   79 (183)
T cd06160           3 LLVLTLLTTLLVGAWLSGN---DVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAF   79 (183)
T ss_pred             HHHHHHHHHHHHHHHHhcc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEE
Confidence            4566666665544322111   2235677888899999999999999999999999999999999999998889999999


Q ss_pred             EEeccCCCCccceeEEEEhhHHHHHHHHHHHHHH
Q 015805          334 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLV  367 (400)
Q Consensus       334 t~i~s~~~~r~alfdIAiAGPlaglllAlill~i  367 (400)
                      +++++..++++++++|++|||++|++++++++++
T Consensus        80 ~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~  113 (183)
T cd06160          80 IRMRSPIPNRKALFDIALAGPLAGLLLALPVLII  113 (183)
T ss_pred             EEecCCCCChhHhehhhhhHHHHHHHHHHHHHHH
Confidence            9999988899999999999999999999887664

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.67  E-value=5.9e-16  Score=146.68  Aligned_cols=89  Identities=27%  Similarity=0.416  Sum_probs=80.6

Q ss_pred             ccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCcccccceeeeeeeEEEEeccCCCCccceeEEEEhhHHHH
Q 015805          278 FDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAG  357 (400)
Q Consensus       278 ~~~~~~l~~glp~aL~l~~iLliHElGH~laARr~GVkvs~P~FIP~i~Lg~fGg~t~i~s~~~~r~alfdIAiAGPlag  357 (400)
                      ..+..+|..++.+++++++++++||+||+++||++|+++.      ++++.+|||++++++..+++++++.|++|||++|
T Consensus        36 ~~~~~~~~~g~~~~~~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~~IalAGPl~N  109 (227)
T cd06164          36 ALGAVAWLLGLAAALLLFASVLLHELGHSLVARRYGIPVR------SITLFLFGGVARLEREPETPGQEFVIAIAGPLVS  109 (227)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEC------eEEEEeeeEEEEecCCCCCHHHHhhhhhhHHHHH
Confidence            3456678889999999999999999999999999999996      8899999999999998889999999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 015805          358 FSLGFVLFLVGFIFP  372 (400)
Q Consensus       358 lllAlill~iGl~ls  372 (400)
                      ++++++++++....+
T Consensus       110 llla~i~~~l~~~~~  124 (227)
T cd06164         110 LVLALLFLLLSLALP  124 (227)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999998887766544

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.53  E-value=7.2e-14  Score=130.31  Aligned_cols=83  Identities=28%  Similarity=0.437  Sum_probs=75.1

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCcccccceeeeeeeEEEEeccCCCCccceeEEEEhhHHHHHHHH
Q 015805          282 NLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG  361 (400)
Q Consensus       282 ~~l~~glp~aL~l~~iLliHElGH~laARr~GVkvs~P~FIP~i~Lg~fGg~t~i~s~~~~r~alfdIAiAGPlaglllA  361 (400)
                      ..|..++.++++++.++++||+||+++||++|+++.      .+.+.+|||++++++...++++++.|++|||++|++++
T Consensus        25 ~~~~~~~~~~l~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~lIalAGPl~n~~la   98 (208)
T cd06161          25 VAWLLGLLEALLLFLSVLLHELGHALVARRYGIRVR------SITLLPFGGVAELEEEPETPKEEFVIALAGPLVSLLLA   98 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc------ceEEEeeeeeeeeccCCCChhHheeeeeehHHHHHHHH
Confidence            457788999999999999999999999999999985      89999999999998877789999999999999999999


Q ss_pred             HHHHHHHHh
Q 015805          362 FVLFLVGFI  370 (400)
Q Consensus       362 lill~iGl~  370 (400)
                      ++++++...
T Consensus        99 ~~~~~l~~~  107 (208)
T cd06161          99 GLFYLLYLL  107 (208)
T ss_pred             HHHHHHHHH
Confidence            988765543

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.42  E-value=3.8e-13  Score=137.96  Aligned_cols=84  Identities=21%  Similarity=0.316  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCeec-----Ccccccc----------eeeeeeeEEEEeccCC-----------
Q 015805          287 GLPGALVTALVIGVHELGHILAAKSTGVELG-----VPYFVPS----------WQIGSFGAITRIRNIV-----------  340 (400)
Q Consensus       287 glp~aL~l~~iLliHElGH~laARr~GVkvs-----~P~FIP~----------i~Lg~fGg~t~i~s~~-----------  340 (400)
                      .+.+.+++.+++++||+|||++||++||++.     ++.-|.+          +.+.|+|||++|.++.           
T Consensus         7 i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~~~   86 (449)
T PRK10779          7 LAAFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELRHH   86 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEEEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhhhh
Confidence            4456677778999999999999999999993     2222222          3467899999997652           


Q ss_pred             ----CCccceeEEEEhhHHHHHHHHHHHHHHHHh
Q 015805          341 ----SKREDLLKVAAAGPLAGFSLGFVLFLVGFI  370 (400)
Q Consensus       341 ----~~r~alfdIAiAGPlaglllAlill~iGl~  370 (400)
                          ++.|+++.|++|||++|+++|++++++-+.
T Consensus        87 ~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~~  120 (449)
T PRK10779         87 AFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVFI  120 (449)
T ss_pred             hhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence                357889999999999999999998876553

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.42  E-value=4.1e-13  Score=123.99  Aligned_cols=79  Identities=34%  Similarity=0.375  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeec-----Cccccc---------ceeeeeeeEEEEeccCCC-------------
Q 015805          289 PGALVTALVIGVHELGHILAAKSTGVELG-----VPYFVP---------SWQIGSFGAITRIRNIVS-------------  341 (400)
Q Consensus       289 p~aL~l~~iLliHElGH~laARr~GVkvs-----~P~FIP---------~i~Lg~fGg~t~i~s~~~-------------  341 (400)
                      .+.+++.+++++||+||+++||++|+++.     ++..+-         .+.+.++||+++++++.+             
T Consensus         3 ~~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~f   82 (182)
T cd06163           3 AFILVLGILIFVHELGHFLVAKLFGVKVEEFSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRSF   82 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHHH
Confidence            45667888999999999999999999984     111111         145788999999986432             


Q ss_pred             ---CccceeEEEEhhHHHHHHHHHHHHHH
Q 015805          342 ---KREDLLKVAAAGPLAGFSLGFVLFLV  367 (400)
Q Consensus       342 ---~r~alfdIAiAGPlaglllAlill~i  367 (400)
                         ++++++.|++|||++|+++|++++++
T Consensus        83 ~~~~~~~ri~V~lAGP~~NlilA~i~~~~  111 (182)
T cd06163          83 NSKPVWQRILIVFAGPLANFLLAIVLFAV  111 (182)
T ss_pred             ccCCcchhhhhhhhHHHHHHHHHHHHHHH
Confidence               57889999999999999999987653

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.33  E-value=7.1e-12  Score=121.83  Aligned_cols=83  Identities=23%  Similarity=0.264  Sum_probs=65.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCcccccceeeeeeeEEEEeccCC---CCccceeEEEEhhHHHHHH
Q 015805          283 LLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIV---SKREDLLKVAAAGPLAGFS  359 (400)
Q Consensus       283 ~l~~glp~aL~l~~iLliHElGH~laARr~GVkvs~P~FIP~i~Lg~fGg~t~i~s~~---~~r~alfdIAiAGPlagll  359 (400)
                      ++...+.+++++++++.+||+||+++||++|+++..--+  .+.+.++||++++.+..   .++++++.|++|||++|++
T Consensus       106 ~~i~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~iGl--~l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlv  183 (263)
T cd06159         106 IFIPLPYGIIALVVGVVVHELSHGILARVEGIKVKSGGL--LLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFV  183 (263)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECchhH--HHHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHH
Confidence            445666777888899999999999999999999962100  01123589999997755   4688999999999999999


Q ss_pred             HHHHHHHH
Q 015805          360 LGFVLFLV  367 (400)
Q Consensus       360 lAlill~i  367 (400)
                      +|++++++
T Consensus       184 la~i~~~l  191 (263)
T cd06159         184 VALIAFAL  191 (263)
T ss_pred             HHHHHHHH
Confidence            99988764

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>TIGR00054 RIP metalloprotease RseP

Probab=99.30  E-value=5.5e-12  Score=128.75  Aligned_cols=83  Identities=25%  Similarity=0.390  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCeec-----Ccccccc---------eeeeeeeEEEEeccCC-------------
Q 015805          288 LPGALVTALVIGVHELGHILAAKSTGVELG-----VPYFVPS---------WQIGSFGAITRIRNIV-------------  340 (400)
Q Consensus       288 lp~aL~l~~iLliHElGH~laARr~GVkvs-----~P~FIP~---------i~Lg~fGg~t~i~s~~-------------  340 (400)
                      +.+.+++.+++++||+|||++||++|+++.     ++.-|.+         +.+.++|||+++.++.             
T Consensus         7 i~~~~~~~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~~~   86 (420)
T TIGR00054         7 LASILALAVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETDGD   86 (420)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchhhh
Confidence            334667778999999999999999999983     3222222         4578899999995221             


Q ss_pred             ----CCccceeEEEEhhHHHHHHHHHHHHHHHHh
Q 015805          341 ----SKREDLLKVAAAGPLAGFSLGFVLFLVGFI  370 (400)
Q Consensus       341 ----~~r~alfdIAiAGPlaglllAlill~iGl~  370 (400)
                          .++++++.|++|||++|+++|++++++.+.
T Consensus        87 ~f~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~~  120 (420)
T TIGR00054        87 LFNNKSVFQKAIIIFAGPLANFIFAIFVYIFISL  120 (420)
T ss_pred             hhccCCHHHHHHhhhcccHHHHHHHHHHHHHHHh
Confidence                367789999999999999999999886543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.27  E-value=3.5e-12  Score=114.80  Aligned_cols=83  Identities=30%  Similarity=0.398  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeec----Cccccc-------ceeeeeeeEEEEeccCCCC-----ccceeEEEEhh
Q 015805          290 GALVTALVIGVHELGHILAAKSTGVELG----VPYFVP-------SWQIGSFGAITRIRNIVSK-----REDLLKVAAAG  353 (400)
Q Consensus       290 ~aL~l~~iLliHElGH~laARr~GVkvs----~P~FIP-------~i~Lg~fGg~t~i~s~~~~-----r~alfdIAiAG  353 (400)
                      +.+++++++.+||+||+++||++|+++.    ...+.|       .+.+.++||++++.+...+     +++++.|++||
T Consensus         3 ~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~~~~~~~~~~~i~laG   82 (180)
T cd05709           3 FILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRAFKKPRWQRLLVALAG   82 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhhhccchhhhhhhhhhh
Confidence            5667788999999999999999999872    001111       2234568999999887654     88999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcC
Q 015805          354 PLAGFSLGFVLFLVGFIFP  372 (400)
Q Consensus       354 PlaglllAlill~iGl~ls  372 (400)
                      |++|+++|++++++....+
T Consensus        83 Pl~nllla~i~~~~~~~~~  101 (180)
T cd05709          83 PLANLLLALLLLLLLLLLG  101 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999988766543

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=99.11  E-value=2.3e-10  Score=112.31  Aligned_cols=72  Identities=28%  Similarity=0.289  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeecCcccccceeeeee----eEEEEeccC---CCCccceeEEEEhhHHHHHHHH
Q 015805          289 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSF----GAITRIRNI---VSKREDLLKVAAAGPLAGFSLG  361 (400)
Q Consensus       289 p~aL~l~~iLliHElGH~laARr~GVkvs~P~FIP~i~Lg~f----Gg~t~i~s~---~~~r~alfdIAiAGPlaglllA  361 (400)
                      .+.+++++++.+||+||+++||++|+++.      ++.+..|    ||+++..+.   ..++++++.|++|||++|+++|
T Consensus       129 ~~l~al~isvvvHElgHal~A~~~gi~V~------~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa  202 (277)
T cd06162         129 YYFTALLISGVVHEMGHGVAAVREQVRVN------GFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLG  202 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeec------eEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHHHHH
Confidence            34566788999999999999999999997      6666566    999998543   2467789999999999999999


Q ss_pred             HHHHH
Q 015805          362 FVLFL  366 (400)
Q Consensus       362 lill~  366 (400)
                      +++++
T Consensus       203 ~i~~~  207 (277)
T cd06162         203 LVGYL  207 (277)
T ss_pred             HHHHH
Confidence            98765

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.96  E-value=3.6e-10  Score=102.19  Aligned_cols=83  Identities=27%  Similarity=0.297  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeecCc-----cccc---------ceeeeeeeEEEEeccC---------------C
Q 015805          290 GALVTALVIGVHELGHILAAKSTGVELGVP-----YFVP---------SWQIGSFGAITRIRNI---------------V  340 (400)
Q Consensus       290 ~aL~l~~iLliHElGH~laARr~GVkvs~P-----~FIP---------~i~Lg~fGg~t~i~s~---------------~  340 (400)
                      +.+++.+++.+||+||+++||++|+|+...     ..+.         .+.+.++||+..+.+.               .
T Consensus         2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~   81 (192)
T PF02163_consen    2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK   81 (192)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            456777899999999999999999998422     1111         1123456776544332               2


Q ss_pred             CCccceeEEEEhhHHHHHHHHHHHHHHHHhcC
Q 015805          341 SKREDLLKVAAAGPLAGFSLGFVLFLVGFIFP  372 (400)
Q Consensus       341 ~~r~alfdIAiAGPlaglllAlill~iGl~ls  372 (400)
                      .++++++.|++|||++|++++++++++....+
T Consensus        82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~  113 (192)
T PF02163_consen   82 RSRWKRILIALAGPLANLLLAIIALLLLYLLS  113 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred             CCccceEEEEEEcHHHHHHHHHHHHHHHHHHh
Confidence            46788999999999999999999887765443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=98.68  E-value=3.1e-08  Score=91.28  Aligned_cols=81  Identities=21%  Similarity=0.232  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeecC----cccccc--------ee--e--eeeeEEEEecc-----CCCCccceeE
Q 015805          290 GALVTALVIGVHELGHILAAKSTGVELGV----PYFVPS--------WQ--I--GSFGAITRIRN-----IVSKREDLLK  348 (400)
Q Consensus       290 ~aL~l~~iLliHElGH~laARr~GVkvs~----P~FIP~--------i~--L--g~fGg~t~i~s-----~~~~r~alfd  348 (400)
                      ..++++.++..||+||+++|+++|.+...    -.+-|-        +.  +  ...+|..+-..     ..++|++++.
T Consensus         4 ~~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~   83 (181)
T cd06158           4 VIIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLL   83 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhh
Confidence            44567779999999999999999998731    111110        00  0  01244443221     1235678999


Q ss_pred             EEEhhHHHHHHHHHHHHHHHHh
Q 015805          349 VAAAGPLAGFSLGFVLFLVGFI  370 (400)
Q Consensus       349 IAiAGPlaglllAlill~iGl~  370 (400)
                      |++|||++|++++++++++...
T Consensus        84 valAGP~~n~~la~i~~~~~~~  105 (181)
T cd06158          84 VSLAGPLSNLLLALLFALLLRL  105 (181)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999887765443

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=97.83  E-value=3e-05  Score=72.46  Aligned_cols=65  Identities=31%  Similarity=0.274  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCeecCcccccceeeee-eeEEEEeccCCCCccceeEEEEhhHHHHHHHHHHHHHHH
Q 015805          296 LVIGVHELGHILAAKSTGVELGVPYFVPSWQIGS-FGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  368 (400)
Q Consensus       296 ~iLliHElGH~laARr~GVkvs~P~FIP~i~Lg~-fGg~t~i~s~~~~r~alfdIAiAGPlaglllAlill~iG  368 (400)
                      ...++||+||.++|...|-++.      .+.+.+ -+|.+..+.  +++...+.+++|||++..+++..++..+
T Consensus        23 l~t~~HE~gHal~a~l~G~~v~------~i~l~~~~~G~~~~~~--~~~~~~~~i~~aGyl~~~l~g~~~~~~~   88 (200)
T PF13398_consen   23 LVTFVHELGHALAALLTGGRVK------GIVLFPDGSGVTVSSG--PSGIGRFLIALAGYLGPALFGLLLLWLL   88 (200)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc------eEEEEeCCCceEEEec--CCCcchhHHhcccchHHHHHHHHHHHHH
Confidence            3588999999999999999997      777766 588888877  6777889999999999999998777665

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=97.66  E-value=0.00016  Score=71.55  Aligned_cols=82  Identities=26%  Similarity=0.373  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCeec-----Ccc-c--cc-c------eeeeeeeEEEEeccCCC-----------
Q 015805          288 LPGALVTALVIGVHELGHILAAKSTGVELG-----VPY-F--VP-S------WQIGSFGAITRIRNIVS-----------  341 (400)
Q Consensus       288 lp~aL~l~~iLliHElGH~laARr~GVkvs-----~P~-F--IP-~------i~Lg~fGg~t~i~s~~~-----------  341 (400)
                      +.+.+.+..++..||+||+|.||++|+++.     +.. +  +. .      +...++||++++..+..           
T Consensus         6 i~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~plggyv~~~~~~~~~~~~~~~~~~   85 (375)
T COG0750           6 IAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPLGGYVKMLGEDAEEVVLKGPEPR   85 (375)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCccceEEEecCccccccccccCcc
Confidence            445566777899999999999999999994     111 0  00 1      23456899988776432           


Q ss_pred             -------CccceeEEEEhhHHHHHHHHHHHHHHHH
Q 015805          342 -------KREDLLKVAAAGPLAGFSLGFVLFLVGF  369 (400)
Q Consensus       342 -------~r~alfdIAiAGPlaglllAlill~iGl  369 (400)
                             +-+.++.+.++||++|+++++..++...
T Consensus        86 ~~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~  120 (375)
T COG0750          86 PRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF  120 (375)
T ss_pred             hhhhhcccccchhheeechHHHHHHHHHHHHHhhh
Confidence                   2233789999999999998888777654

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.00056  Score=70.89  Aligned_cols=80  Identities=29%  Similarity=0.361  Sum_probs=57.0

Q ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHHHcCCeec-CcccccceeeeeeeEEEEeccCCC---CccceeEEEEhhHHHHHHHH
Q 015805          287 GLPG-ALVTALVIGVHELGHILAAKSTGVELG-VPYFVPSWQIGSFGAITRIRNIVS---KREDLLKVAAAGPLAGFSLG  361 (400)
Q Consensus       287 glp~-aL~l~~iLliHElGH~laARr~GVkvs-~P~FIP~i~Lg~fGg~t~i~s~~~---~r~alfdIAiAGPlaglllA  361 (400)
                      .++| ...+.+.+.+||+||+|+|.+.||++. +..||   ..-.-||++.+....-   ++-..+.|.-||-.=||++|
T Consensus       122 ~I~yf~t~lvi~~vvHElGHalAA~segV~vngfgIfi---~aiyPgafvdl~~dhLqsl~~fr~LrIfcAGIWHNfvfa  198 (484)
T KOG2921|consen  122 GIAYFLTSLVITVVVHELGHALAAASEGVQVNGFGIFI---AAIYPGAFVDLDNDHLQSLPSFRALRIFCAGIWHNFVFA  198 (484)
T ss_pred             cchhhhhhHHHHHHHHHhhHHHHHHhcCceeeeeEEEE---EEEcCchhhhhhhhHHhhcchHHHHHHHhhhHHHHHHHH
Confidence            4443 344566888999999999999999995 22222   2223688888765321   34457889999999999999


Q ss_pred             HHHHHHHH
Q 015805          362 FVLFLVGF  369 (400)
Q Consensus       362 lill~iGl  369 (400)
                      +++.+.-.
T Consensus       199 llc~lal~  206 (484)
T KOG2921|consen  199 LLCVLALF  206 (484)
T ss_pred             HHHHHHHH
Confidence            98776544

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=96.42  E-value=0.0023  Score=60.93  Aligned_cols=75  Identities=24%  Similarity=0.259  Sum_probs=55.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCcccccceeeeeeeEEEEeccCCCCcc-------ceeEEEEh-hHH
Q 015805          284 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKRE-------DLLKVAAA-GPL  355 (400)
Q Consensus       284 l~~glp~aL~l~~iLliHElGH~laARr~GVkvs~P~FIP~i~Lg~fGg~t~i~s~~~~r~-------alfdIAiA-GPl  355 (400)
                      +..+....++++..+..||+||+..++++|+++.      .+.++.+||+..++..+.+.+       +...++.| ||+
T Consensus        41 ~~~~~~~~~~l~~rl~l~~~gh~~~~~~~~~~l~------~~~i~~~~g~~~~~~~~v~~~~~~~~~~~g~lvs~algpl  114 (230)
T COG1994          41 LGDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLL------LALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPL  114 (230)
T ss_pred             HhhhHHHHHHHhHHHhhhHhhHHHHHHHHHHHHH------HHHHHhccceeeecCcCcCHHHHhhhhccchhHHHHHHHH
Confidence            4445555555778999999999999999999985      444445888888887665543       45556667 888


Q ss_pred             HHHHHHHHH
Q 015805          356 AGFSLGFVL  364 (400)
Q Consensus       356 aglllAlil  364 (400)
                      .|++++++.
T Consensus       115 ~ni~la~~~  123 (230)
T COG1994         115 TNIALAVLG  123 (230)
T ss_pred             HHHHHHHHH
Confidence            888877664

>PF11667 DUF3267: Protein of unknown function (DUF3267); InterPro: IPR021683 This family of proteins has no known function

Probab=87.39  E-value=0.27  Score=41.64  Aligned_cols=71  Identities=23%  Similarity=0.271  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCeecCcccccceeeeeeeEEEEeccCCCCccceeEEEEhhHHHHHHHHHHHHHHHHhcC
Q 015805          295 ALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFP  372 (400)
Q Consensus       295 ~~iLliHElGH~laARr~GVkvs~P~FIP~i~Lg~fGg~t~i~s~~~~r~alfdIAiAGPlaglllAlill~iGl~ls  372 (400)
                      +..+.+||+-|.+..+.+|-+....+   .+....+-.++. .+. +=.+.++.+...-|.  ++++++.+++++.+|
T Consensus         4 ~~~~~~HEliH~l~~~~~~~~~~~~~---g~~~~~~~~~~~-~~~-~~sk~~~~i~~l~P~--ivl~~~~~~~~~~~p   74 (111)
T PF11667_consen    4 IVLIPLHELIHGLFFKLFGKKPKVKF---GFKWKLGPFYAT-CNE-PISKWRFIIILLAPF--IVLTILPLILGFFFP   74 (111)
T ss_pred             EeeHHHHHHHHHHHHHHhCCCCceEE---EEEeeeEEEEEe-cCc-EEeHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            34678999999999999998532000   111111222322 333 334455666666675  556666666555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	400
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} Length = 224

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 274 LLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI 333
           ++     +N         ++  + + +HELGH   AK  GV++     +P       G +
Sbjct: 27  VIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP------IGGV 80

Query: 334 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLA 392
             +  I  + E  L++  AGPL  F +G VL +V   F  +     ++         L 
Sbjct: 81  AMMDKIPKEGE--LRIGIAGPLVSFIIGIVLLIVSQFFDININGYPLLYTLSLLNLMLG 137

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 36/241 (14%), Positives = 70/241 (29%), Gaps = 58/241 (24%)

Query: 123 DTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIR------IPKETIDILKDQVFGFDTFFV 176
           D + G       ++              D ++       +      IL  +    D   +
Sbjct: 8   DFETGEHQYQYKDIL---------SVFEDAFVDNFDCKDVQDMPKSILSKEEI--D--HI 54

Query: 177 TNQEPYEGGV--LFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLL--VNPEDDKPVAVV 232
              +    G   LF   L  +  +  +K    ++      YK FL+  +  E  +P    
Sbjct: 55  IMSKDAVSGTLRLF-WTLLSKQEEMVQKF---VEEVLRINYK-FLMSPIKTEQRQP---- 105

Query: 233 VPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVP------ALQSNLLSTFDNLNLLTN 286
               T          +          VF     NV        L+  LL      N+L +
Sbjct: 106 -SMMTRMYIEQRDRLY------NDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 287 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 346
           G+ G+  T + + V          S  V+  + + +  W + +         ++   + L
Sbjct: 157 GVLGSGKTWVALDV--------CLSYKVQCKMDFKI-FW-L-NLKNCNSPETVLEMLQKL 205

Query: 347 L 347
           L
Sbjct: 206 L 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	400
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	99.37

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=99.37  E-value=2.2e-13  Score=127.52  Aligned_cols=78  Identities=28%  Similarity=0.471  Sum_probs=66.4

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCcccccceeeeeeeEEEEeccCCCCccceeEEEEhhHHHHHHHHHH
Q 015805          284 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFV  363 (400)
Q Consensus       284 l~~glp~aL~l~~iLliHElGH~laARr~GVkvs~P~FIP~i~Lg~fGg~t~i~s~~~~r~alfdIAiAGPlaglllAli  363 (400)
                      |..+ .+++++++++++||+||+++||++|+++.      .+++.+|||++++++.  +++++++|++|||++|+++|++
T Consensus        38 ~~~g-~~~l~l~~~v~~HElgH~~~A~~~G~~~~------~i~l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~  108 (224)
T 3b4r_A           38 IFWA-VLFILLFVSVVLHELGHSYVAKKYGVKIE------KILLLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIV  108 (224)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CEEECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCccc------cEEEEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHH
Confidence            3444 77888899999999999999999999997      5777889999999764  4589999999999999999998


Q ss_pred             HHHHHHh
Q 015805          364 LFLVGFI  370 (400)
Q Consensus       364 ll~iGl~  370 (400)
                      ++++...
T Consensus       109 ~~~~~~~  115 (224)
T 3b4r_A          109 LLIVSQF  115 (224)
T ss_dssp             HHHHTTT
T ss_pred             HHHHHHH
Confidence            8766443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	400
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	80.13

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.13  E-value=0.37  Score=38.23  Aligned_cols=16  Identities=44%  Similarity=0.843  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 015805          296 LVIGVHELGHILAAKS  311 (400)
Q Consensus       296 ~iLliHElGH~laARr  311 (400)
                      ..+++||+||++=-+.
T Consensus       118 ~~v~~HEiGHaLGL~H  133 (169)
T d1rm8a_         118 FLVAVHELGHALGLEH  133 (169)
T ss_dssp             HHHHHHHHHHHHTCCC
T ss_pred             hhhhhhhhhhhhcCCC
Confidence            3788999999985433