Query 015807
Match_columns 400
No_of_seqs 169 out of 1147
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 19:00:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xb2_B EF-TS, elongation facto 100.0 2.7E-82 9.2E-87 619.3 29.1 266 77-391 4-284 (291)
2 3avx_A Elongation factor TS, e 100.0 8.9E-83 3.1E-87 710.5 17.9 274 79-399 7-280 (1289)
3 1aip_C EF-TS, elongation facto 100.0 2.6E-76 8.9E-81 545.3 23.0 193 75-381 1-195 (196)
4 1tfe_A Elongation factor TS; 1 100.0 2.8E-45 9.4E-50 325.9 13.6 142 239-385 3-145 (145)
5 2cp9_A EF-TS, EF-TSMT, elongat 99.8 1.3E-20 4.5E-25 145.0 5.3 55 78-132 10-64 (64)
6 1z96_A DNA-damage, UBA-domain 97.4 0.00021 7.2E-09 48.8 5.3 34 79-113 6-39 (40)
7 1wj7_A Hypothetical protein (R 97.4 0.00015 5.3E-09 60.5 4.9 39 79-117 41-79 (104)
8 2g3q_A Protein YBL047C; endocy 97.0 0.00051 1.7E-08 48.1 3.8 36 79-115 6-41 (43)
9 1xb2_B EF-TS, elongation facto 96.8 0.0012 4E-08 64.5 5.8 101 239-380 62-165 (291)
10 2dah_A Ubiquilin-3; UBA domain 96.8 0.0023 7.9E-08 47.3 5.5 39 78-117 10-49 (54)
11 2knz_A Ubiquilin-4; cytoplasm, 96.7 0.0028 9.5E-08 46.5 5.7 39 77-116 11-50 (53)
12 2jy5_A Ubiquilin-1; UBA, alter 96.7 0.0027 9.1E-08 46.5 5.5 36 78-114 13-49 (52)
13 1tfe_A Elongation factor TS; 1 96.6 0.0025 8.4E-08 56.2 5.6 101 129-237 1-141 (145)
14 2dak_A Ubiquitin carboxyl-term 96.6 0.0031 1.1E-07 47.7 5.2 36 79-115 11-46 (63)
15 1vej_A Riken cDNA 4931431F19; 96.5 0.0047 1.6E-07 48.6 6.1 37 78-115 30-67 (74)
16 2bwb_A Ubiquitin-like protein 96.4 0.0051 1.7E-07 43.9 5.0 36 78-114 8-44 (46)
17 1wr1_B Ubiquitin-like protein 96.3 0.0053 1.8E-07 46.0 5.1 37 78-115 18-55 (58)
18 1ify_A HHR23A, UV excision rep 96.3 0.0042 1.4E-07 44.8 4.4 36 79-115 10-45 (49)
19 2dna_A Unnamed protein product 96.3 0.007 2.4E-07 46.7 5.8 39 78-116 20-58 (67)
20 1wji_A Tudor domain containing 96.2 0.0051 1.7E-07 46.8 4.7 37 79-116 11-47 (63)
21 2cpw_A CBL-interacting protein 96.2 0.0074 2.5E-07 46.0 5.4 36 79-115 21-57 (64)
22 2dag_A Ubiquitin carboxyl-term 95.8 0.012 4E-07 46.1 5.1 37 79-116 11-48 (74)
23 2dai_A Ubadc1, ubiquitin assoc 95.7 0.015 5.1E-07 46.6 5.4 37 79-116 31-67 (83)
24 1vg5_A RSGI RUH-014, rhomboid 95.6 0.012 4.1E-07 46.1 4.4 36 79-115 31-66 (73)
25 1wiv_A UBP14, ubiquitin-specif 95.5 0.02 6.9E-07 44.7 5.4 37 79-116 31-67 (73)
26 1whc_A RSGI RUH-027, UBA/UBX 3 95.5 0.014 4.9E-07 44.3 4.3 37 79-116 11-48 (64)
27 1tr8_A Conserved protein (MTH1 95.3 0.016 5.6E-07 48.1 4.5 36 78-113 66-101 (102)
28 2crn_A Ubash3A protein; compac 94.9 0.029 1E-06 42.7 4.6 37 79-116 11-48 (64)
29 2ekk_A UBA domain from E3 ubiq 94.9 0.033 1.1E-06 39.5 4.6 35 79-115 11-45 (47)
30 2dkl_A Trinucleotide repeat co 94.9 0.036 1.2E-06 44.5 5.4 38 78-116 22-59 (85)
31 1veg_A NEDD8 ultimate buster-1 94.9 0.039 1.3E-06 44.2 5.4 37 79-116 31-67 (83)
32 1vek_A UBP14, ubiquitin-specif 94.9 0.04 1.4E-06 44.1 5.5 37 79-116 31-68 (84)
33 4ae4_A Ubiquitin-associated pr 94.7 0.023 7.7E-07 48.4 3.9 40 76-116 75-114 (118)
34 1oai_A Nuclear RNA export fact 94.7 0.072 2.5E-06 39.9 6.1 39 77-115 7-45 (59)
35 1wgn_A UBAP1, ubiquitin associ 94.4 0.023 7.9E-07 43.1 2.9 36 80-116 22-57 (63)
36 2lbc_A Ubiquitin carboxyl-term 94.4 0.044 1.5E-06 46.6 5.0 36 79-115 80-115 (126)
37 2cwb_A Chimera of immunoglobul 94.4 0.046 1.6E-06 45.9 4.9 38 79-116 68-105 (108)
38 2jp7_A MRNA export factor MEX6 94.1 0.082 2.8E-06 39.4 5.3 39 77-115 6-44 (57)
39 3e21_A HFAF1, FAS-associated f 93.7 0.096 3.3E-06 37.3 4.8 34 78-111 6-40 (45)
40 2lva_A Ubiquitin carboxyl-term 92.2 0.017 5.9E-07 49.4 0.0 40 79-118 20-60 (129)
41 1dv0_A DNA repair protein HHR2 93.0 0.033 1.1E-06 39.8 1.4 36 79-115 6-41 (47)
42 2lbc_A Ubiquitin carboxyl-term 92.0 0.11 3.7E-06 44.2 3.6 37 79-116 5-42 (126)
43 4ae4_A Ubiquitin-associated pr 91.9 0.11 3.8E-06 44.1 3.6 38 79-117 10-47 (118)
44 1vdl_A Ubiquitin carboxyl-term 91.5 0.28 9.5E-06 38.5 5.1 38 79-116 26-64 (80)
45 1aip_C EF-TS, elongation facto 91.1 0.23 7.7E-06 45.8 5.0 31 206-236 164-194 (196)
46 1v92_A NSFL1 cofactor P47; 3-h 90.8 0.44 1.5E-05 33.0 5.2 37 79-115 7-43 (46)
47 2dam_A ETEA protein; KIAA0887, 90.3 0.34 1.2E-05 37.0 4.6 39 77-115 18-57 (67)
48 2dal_A Protein KIAA0794; FAS a 89.2 0.56 1.9E-05 35.1 5.0 39 78-116 16-54 (62)
49 2cp8_A NEXT to BRCA1 gene 1 pr 87.9 1.3 4.5E-05 32.6 6.0 39 78-116 10-48 (54)
50 2ooa_A E3 ubiquitin-protein li 87.7 0.66 2.3E-05 33.9 4.3 37 79-116 13-49 (52)
51 2d9s_A CBL E3 ubiquitin protei 87.5 0.68 2.3E-05 34.0 4.3 37 80-117 12-48 (53)
52 1otr_A Protein CUE2; protein-p 85.4 1.2 4.2E-05 32.0 4.7 38 79-116 6-44 (49)
53 2oo9_A E3 ubiquitin-protein li 85.4 0.97 3.3E-05 32.2 4.0 30 88-117 14-43 (46)
54 2dzl_A Protein FAM100B; UBA-li 84.0 1.4 5E-05 33.4 4.8 37 79-115 19-55 (66)
55 1wgl_A TOLL-interacting protei 82.9 1.7 5.9E-05 32.3 4.7 37 79-115 11-48 (59)
56 2juj_A E3 ubiquitin-protein li 81.8 1.3 4.5E-05 32.7 3.6 37 80-117 10-46 (56)
57 3avx_A Elongation factor TS, e 79.1 1.1 3.6E-05 51.6 3.5 47 239-292 59-106 (1289)
58 3k9o_A Ubiquitin-conjugating e 78.1 2.5 8.5E-05 38.4 5.1 37 78-115 164-200 (201)
59 1ctf_A Ribosomal protein L7/L1 77.9 1.9 6.5E-05 33.7 3.6 26 77-102 19-44 (74)
60 1oqy_A HHR23A, UV excision rep 77.0 0.92 3.1E-05 45.4 2.0 36 78-114 169-204 (368)
61 1jkg_B TAP; NTF2-like domain, 75.2 0.59 2E-05 44.2 0.0 37 78-114 199-235 (250)
62 3k6g_A Telomeric repeat-bindin 74.9 6.5 0.00022 32.6 6.1 39 77-115 13-51 (111)
63 2dhy_A CUE domain-containing p 72.4 5.9 0.0002 30.2 5.1 37 79-115 20-57 (67)
64 2cos_A Serine/threonine protei 65.2 4.2 0.00014 29.9 2.7 37 81-118 13-50 (54)
65 1dd3_A 50S ribosomal protein L 63.7 8.4 0.00029 33.1 4.7 41 58-104 57-97 (128)
66 3e46_A Ubiquitin-conjugating e 60.7 11 0.00039 35.5 5.6 37 77-114 215-251 (253)
67 2zjq_5 50S ribosomal protein L 56.0 8.5 0.00029 32.8 3.4 36 59-100 56-91 (122)
68 2j01_L 50S ribosomal protein L 55.2 8.7 0.0003 32.8 3.3 36 59-100 59-94 (125)
69 1oqy_A HHR23A, UV excision rep 53.9 4.7 0.00016 40.2 1.7 38 78-116 326-363 (368)
70 2qsf_X RAD23, UV excision repa 52.2 19 0.00064 32.3 5.2 38 77-115 130-167 (171)
71 2ftc_E L12MT, MRP-L12, 39S rib 45.0 16 0.00054 31.7 3.4 38 60-102 69-107 (137)
72 3ihp_A Ubiquitin carboxyl-term 43.8 15 0.00052 40.4 3.9 35 80-115 723-757 (854)
73 2jml_A DNA binding domain/tran 42.4 12 0.00042 28.4 2.1 38 63-103 41-78 (81)
74 2di0_A Activating signal coint 41.6 89 0.003 24.0 6.8 54 75-128 11-65 (71)
75 3hh0_A Transcriptional regulat 40.6 17 0.00058 31.2 3.0 49 63-115 39-87 (146)
76 3bq3_A Defective in cullin ned 39.2 36 0.0012 32.5 5.3 41 78-118 16-56 (270)
77 3sgf_J 50S ribosomal protein L 37.1 7.1 0.00024 33.2 0.0 27 77-103 66-92 (121)
78 4dbg_B Ring finger protein 31; 35.0 34 0.0011 30.4 4.0 37 80-116 105-141 (162)
79 3gp4_A Transcriptional regulat 33.6 42 0.0014 28.5 4.3 51 62-116 36-89 (142)
80 3huh_A Virulence protein STM31 32.3 28 0.00097 28.2 3.0 52 102-153 93-145 (152)
81 1q02_A Sequestosome 1; helical 32.0 25 0.00084 25.6 2.1 37 79-115 9-49 (52)
82 3gpv_A Transcriptional regulat 31.8 39 0.0013 28.8 3.9 50 62-115 50-102 (148)
83 3hdp_A Glyoxalase-I; glutathio 27.3 25 0.00085 27.6 1.7 45 105-149 87-131 (133)
84 4dbg_B Ring finger protein 31; 21.9 1.1E+02 0.0039 27.0 5.0 45 78-122 58-107 (162)
85 3r6a_A Uncharacterized protein 21.5 52 0.0018 27.0 2.6 57 104-163 74-130 (144)
86 2e2a_A Protein (enzyme IIA); h 20.3 61 0.0021 26.6 2.7 28 88-115 17-45 (105)
No 1
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=100.00 E-value=2.7e-82 Score=619.31 Aligned_cols=266 Identities=26% Similarity=0.349 Sum_probs=225.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH----hchhhhhhhcccccCCceEEEEecCCeEEEEEEeccc
Q 015807 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK----RGKVLASKKSSRTATEGLLALAQNESKAAVIELNCET 152 (400)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk----kG~akA~Kka~R~a~EGlV~~~~~~~~aalVElNCET 152 (400)
.+++||+||++||||||||||||+++|||||+|++|||+ +||++|+||+||.|+||+|+++++++.|+||||||||
T Consensus 4 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNcET 83 (291)
T 1xb2_B 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNCET 83 (291)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEESC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEeccc
Confidence 468999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cceecchHHHHHHHHHHHHHHhhcCCCCCCC--CCCCC-ChhhhhcccccCCCCCCCCCCc--HHHHHHHHHHHhcceee
Q 015807 153 DFVSRNEIFQYLALALAKQALVAENVSQPVS--GLFPV-GPEYLEGLKLNLDHPKIGGETT--VQNAITEVAAIMGENVK 227 (400)
Q Consensus 153 DFVArN~~F~~la~~ia~~~l~~~~~~~~~~--~~~~l-~~e~l~~~~~~~~~~~~~~~~T--v~d~i~~~ia~iGENI~ 227 (400)
||||||+.|++|+++|+..++...+...... ....+ +++++..+++ .++.| |+|.+.++|+++||||.
T Consensus 84 DFVArN~~F~~l~~~ia~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~-------~~~~t~tv~d~i~~~ia~iGEni~ 156 (291)
T 1xb2_B 84 DFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPA-------GPEREGSLKDQLALAIGKLGENMI 156 (291)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBC-------CSSSCSBHHHHHHHHHHHHCSCEE
T ss_pred ceeeCCHHHHHHHHHHHHHHHhcCCcccccccccccccCCHHHHhhccc-------ccCcchhHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999998765321111 11112 6777776653 23556 99999999999999999
Q ss_pred eeeeEEeeeCCCCeEEEEeccCCC------CCCCcEEEEEEEeecCCCCCCchhhhHHHHHHHHHhhcCCcccCccCCCH
Q 015807 228 LRRGFLLSASSPGVVSTYLHTSPQ------SGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSA 301 (400)
Q Consensus 228 LrR~~~i~~~~~~~v~sYvH~~~~------~~~Gkig~LV~l~~~~~~~~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~ 301 (400)
|||+..+..++++++++|+|+++. +++||||+||.|++.++. +.+.+++++||||||||+|.||++++|
T Consensus 157 lrR~~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~~---~~l~~~ak~iAmHIaA~~P~~l~~~~v-- 231 (291)
T 1xb2_B 157 LKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELK---ANLADLGRRLGQHVVGMAPLSVGSLDD-- 231 (291)
T ss_dssp EEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCG---GGCHHHHHHHHHHHHHHCCSBCCCTTS--
T ss_pred HHHHHHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCcc---chHHHHHHHHHHHHHhcCCcccCHHHh--
Confidence 999999987657899999998743 477999999999975321 224589999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEeeEEEEEec
Q 015807 302 DALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVG 381 (400)
Q Consensus 302 ~vle~Er~i~~~q~~~~gKP~~iieKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~i~V~~F~R~~vG 381 (400)
.+ +||+|+|||+|+||+||++||+|||++. +++|++|+||+||
T Consensus 232 ---------------~~----------------gf~~E~~Ll~Q~fv~D~~~tV~~~l~~~------~i~V~~F~RfevG 274 (291)
T 1xb2_B 232 ---------------EP----------------GGEAETKMLSQPYLLDPSITLGQYVQPH------GVSVVDFVRFECG 274 (291)
T ss_dssp ---------------CC----------------CGGGCCBGGGSBCTTCTTSBHHHHHGGG------TCEEEEEEEEETT
T ss_pred ---------------hc----------------cchhheeeccCcccCCCCcCHHHHHHhC------CCEEEEEEEEEec
Confidence 11 2999999999999999999999999985 5999999999999
Q ss_pred cccccccCCC
Q 015807 382 EGIRRVEASN 391 (400)
Q Consensus 382 Egiek~~~~f 391 (400)
|||||+++|.
T Consensus 275 Egiek~~~~~ 284 (291)
T 1xb2_B 275 EGEDAADAEL 284 (291)
T ss_dssp CC--------
T ss_pred Cccccccccc
Confidence 9999998875
No 2
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=8.9e-83 Score=710.47 Aligned_cols=274 Identities=35% Similarity=0.527 Sum_probs=256.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHhchhhhhhhcccccCCceEEEEecCCeEEEEEEeccccceecc
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRN 158 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~akA~Kka~R~a~EGlV~~~~~~~~aalVElNCETDFVArN 158 (400)
++||+||++||||||||||||+|+|||||+|++||||+|+++|+||++|.|+||+|+++++++.|+||||||||||||||
T Consensus 7 ~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRkkG~akAaKka~R~aaEGlv~~~i~~~~g~lvEvNcETDFVAkn 86 (1289)
T 3avx_A 7 SLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKD 86 (1289)
T ss_dssp SCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHTTHHHHHHHHTTSCCCEEEEEEEECSSEEEEEEEEESCHHHHTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHhCcchhhHhcCccccCceEEEEEcCCEEEEEEEEccccceeCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhhcccccCCCCCCCCCCcHHHHHHHHHHHhcceeeeeeeEEeeeCC
Q 015807 159 EIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASS 238 (400)
Q Consensus 159 ~~F~~la~~ia~~~l~~~~~~~~~~~~~~l~~e~l~~~~~~~~~~~~~~~~Tv~d~i~~~ia~iGENI~LrR~~~i~~~~ 238 (400)
++|++|+++|++.++..... +.|++... |+|.+.++++++||||+|||+..+.
T Consensus 87 ~~F~~l~~~ia~~~~~~~~~----------~~e~l~~~--------------v~~~~~~~ia~iGEni~lrR~~~~~--- 139 (1289)
T 3avx_A 87 AGFQAFADKVLDAAVAGKIT----------DVEVLKAQ--------------FEEERVALVAKIGENINIRRVAALE--- 139 (1289)
T ss_dssp HHHHHHHHHHHHHHHTTTCC----------CHHHHHHT--------------TSTTTTTTTTTTCSCCEEEEEEEEE---
T ss_pred HHHHHHHHHHHHHHHhcCCC----------CHHHHHHH--------------HHHHHHHHHhhhccceEEeEEEEEE---
Confidence 99999999999999876532 34555532 5677888999999999999999996
Q ss_pred CCeEEEEeccCCCCCCCcEEEEEEEeecCCCCCCchhhhHHHHHHHHHhhcCCcccCccCCCHHHHHHHHHHHHHHHHhc
Q 015807 239 PGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAEST 318 (400)
Q Consensus 239 ~~~v~sYvH~~~~~~~Gkig~LV~l~~~~~~~~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~~vle~Er~i~~~q~~~~ 318 (400)
++.+++|+|+ ||||+||.+++.+ +++||+||||||||+|.||++++||++++++||+|+++|++.+
T Consensus 140 ~~~v~~Y~Hg------~kigvlV~~~~~~--------~~~ak~iAMhIaA~~P~~l~~~~vp~~~ve~E~~i~~~~a~~~ 205 (1289)
T 3avx_A 140 GDVLGSYQHG------ARIGVLVAAKGAD--------EELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQS 205 (1289)
T ss_dssp CSEEEEEEET------TTEEEEEEEESCC--------HHHHHHHHHHHHHHCCSBSSTTTSCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecC------CeEEEEEEecCCc--------HHHHHHHHHHHHhcCCeecchhhCCHHHHHHHHHHHHHHHHhc
Confidence 4899999994 6999999998632 3799999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEeeEEEEEeccccccccCCChhhhhhc
Q 015807 319 GKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGIRRVEASNTDEPVAQ 398 (400)
Q Consensus 319 gKP~~iieKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~i~V~~F~R~~vGEgiek~~~~fa~Ev~aq 398 (400)
|||++|+||||+|||+|||+|+||++|+||+|+++||+|+|++. +++|.+|+||++|||||+.++||++||++|
T Consensus 206 gKPe~i~eKiveGrl~Kf~~E~~Ll~Q~fv~d~~~TV~~llke~------~a~V~~FvRfEVGEGIEK~e~dfAaEVaaq 279 (1289)
T 3avx_A 206 GKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIEKVETDFAAEVAAM 279 (1289)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTBSTTSBCTTSTTSBHHHHHHTT------TCEEEEEEEEETTTTCCCCCCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhccCCceeecCccCHHHHHHhc------CcEEEEeeeEeccccccccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999986 489999999999999999999999999987
Q ss_pred c
Q 015807 399 A 399 (400)
Q Consensus 399 ~ 399 (400)
+
T Consensus 280 l 280 (1289)
T 3avx_A 280 S 280 (1289)
T ss_dssp H
T ss_pred h
Confidence 5
No 3
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=100.00 E-value=2.6e-76 Score=545.27 Aligned_cols=193 Identities=45% Similarity=0.720 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHhchhhhhhhcccccCCceEEEEe--cCCeEEEEEEeccc
Q 015807 75 TEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQ--NESKAAVIELNCET 152 (400)
Q Consensus 75 ~~~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~akA~Kka~R~a~EGlV~~~~--~~~~aalVElNCET 152 (400)
|+.+++||+||++||+|||||||||+++|||+|+|++|||++|+++|+||++|.|+||+|++++ +++.|+||||||||
T Consensus 1 m~~a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG~akAaKka~R~aaEGlV~~~i~~~~~~gvlvEvNcET 80 (196)
T 1aip_C 1 MSQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCET 80 (196)
T ss_dssp -CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEECSS
T ss_pred CChHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcCCchhhHhccccccCCeEEEEEecCCCEEEEEEEecCC
Confidence 3567999999999999999999999999999999999999999999999999999999999999 77899999999999
Q ss_pred cceecchHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhhcccccCCCCCCCCCCcHHHHHHHHHHHhcceeeeeeeE
Q 015807 153 DFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGF 232 (400)
Q Consensus 153 DFVArN~~F~~la~~ia~~~l~~~~~~~~~~~~~~l~~e~l~~~~~~~~~~~~~~~~Tv~d~i~~~ia~iGENI~LrR~~ 232 (400)
||||||+.|+.|
T Consensus 81 DFVArn~~F~~l-------------------------------------------------------------------- 92 (196)
T 1aip_C 81 DFVARNELFQNL-------------------------------------------------------------------- 92 (196)
T ss_dssp HHHHTSHHHHHH--------------------------------------------------------------------
T ss_pred ccccCCHHHHHH--------------------------------------------------------------------
Confidence 999999999988
Q ss_pred EeeeCCCCeEEEEeccCCCCCCCcEEEEEEEeecCCCCCCchhhhHHHHHHHHHhhcCCcccCccCCCHHHHHHHHHHHH
Q 015807 233 LLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILK 312 (400)
Q Consensus 233 ~i~~~~~~~v~sYvH~~~~~~~Gkig~LV~l~~~~~~~~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~~vle~Er~i~~ 312 (400)
+++|||||||++|.||++++||++++++||+|++
T Consensus 93 ----------------------------------------------akdiAMhiAA~~P~~l~~~~vp~~~ve~E~~i~~ 126 (196)
T 1aip_C 93 ----------------------------------------------AKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYI 126 (196)
T ss_dssp ----------------------------------------------HHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHHhCCccCChhhCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEeeEEEEEec
Q 015807 313 SQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVG 381 (400)
Q Consensus 313 ~q~~~~gKP~~iieKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~i~V~~F~R~~vG 381 (400)
+|+..+|||++|++|||+|||+|||+|+||++|+||+|+++||+|+|++..+++|.+++|.+|+||+||
T Consensus 127 ~~~~~~gKPe~i~eKiveGrl~Kf~~e~~Ll~Q~fvkd~~~tV~~~l~~~~~~~G~~i~v~~F~R~~vG 195 (196)
T 1aip_C 127 QAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELG 195 (196)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHBTTTSBCTTCTTSBHHHHHHHHHHHHCSCCEEEEEEEEETT
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHhHhhhhcCCccCCCCCCHHHHHHHHHHhcCCCcEEEEEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
No 4
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=100.00 E-value=2.8e-45 Score=325.86 Aligned_cols=142 Identities=33% Similarity=0.595 Sum_probs=120.3
Q ss_pred CCeEEEEeccCCCCCCCcEEEEEEEeecCCCC-CCchhhhHHHHHHHHHhhcCCcccCccCCCHHHHHHHHHHHHHHHHh
Q 015807 239 PGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSS-SFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAES 317 (400)
Q Consensus 239 ~~~v~sYvH~~~~~~~Gkig~LV~l~~~~~~~-~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~~vle~Er~i~~~q~~~ 317 (400)
+|.+++|+|++ |++|+||.++++.+.. -.+...+++++|||||+|++|.|+++++||++++++||+++++|+..
T Consensus 3 EG~v~~yiH~~-----gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~~e~vp~~~~e~E~~i~~~~~~~ 77 (145)
T 1tfe_A 3 EGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALN 77 (145)
T ss_dssp EEEEEEEECTT-----SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEecC-----CCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccchhhCCHHHHHHHHHHHHHHHHh
Confidence 45666666654 5666666666532210 01122457889999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEeeEEEEEeccccc
Q 015807 318 TGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGIR 385 (400)
Q Consensus 318 ~gKP~~iieKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~i~V~~F~R~~vGEgie 385 (400)
+|||++|++||++|||+|||+|+||++|+|++|+++||+|+|++..+++|.+++|.+|+||++||||.
T Consensus 78 ~gKPe~i~ekiv~Grl~Kf~~e~~Ll~Q~fv~d~~~tV~~~l~~~~~~iGeni~v~rf~r~~vGegi~ 145 (145)
T 1tfe_A 78 EGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAMMC 145 (145)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC---
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhCccccCCCccHHHHHHHHHHhhCCCeEEEEEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999973
No 5
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=99.81 E-value=1.3e-20 Score=145.04 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHhchhhhhhhcccccCCc
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEG 132 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~akA~Kka~R~a~EG 132 (400)
+++||+||++||+|||||||||+++|||+++|++|||++|++.+.||++|.++.|
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~~~a~kKA~k~~~~~ 64 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCCSSSCCCCCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHhccCCCC
Confidence 4899999999999999999999999999999999999999999999999998766
No 6
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.43 E-value=0.00021 Score=48.83 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKEL 113 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~L 113 (400)
+.|.+|.+. |.+--.|++||..++||++.|++||
T Consensus 6 ~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 6 SKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 689999998 9999999999999999999999998
No 7
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.39 E-value=0.00015 Score=60.50 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHhc
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (400)
+.|+.|.++||.+-.+|++||.++|||++.|++.|...+
T Consensus 41 ekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 41 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 689999999999999999999999999999999999654
No 8
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.04 E-value=0.00051 Score=48.05 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+.|++|.++ |.+--+|++||..++||++.|++||-.
T Consensus 6 ~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 678999885 899999999999999999999999963
No 9
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=96.84 E-value=0.0012 Score=64.51 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=71.2
Q ss_pred CCeEEEEeccCCCCCCCcEEEEEEEeecCCCCC-CchhhhHHHHHHHHHhhcCCcccCccCCCHHHHHHHHHHHHHHHHh
Q 015807 239 PGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSS-FDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAES 317 (400)
Q Consensus 239 ~~~v~sYvH~~~~~~~Gkig~LV~l~~~~~~~~-~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~~vle~Er~i~~~q~~~ 317 (400)
.|.|+.|+| |+.|+||.+.++.+... .+....|+++||+++++.+|...+..+....
T Consensus 62 EGlV~~~~~-------~~~gvlvEvNcETDFVArN~~F~~l~~~ia~~~~~~~~~~~~~~~~~~~--------------- 119 (291)
T 1xb2_B 62 EGLIGLLQE-------GDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSK--------------- 119 (291)
T ss_dssp EEEEEEEEE-------TTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEE---------------
T ss_pred ceEEEEEEc-------CCEEEEEEEecccceeeCCHHHHHHHHHHHHHHHhcCCccccccccccc---------------
Confidence 789999997 68999999998865421 2345689999999999998864333322100
Q ss_pred cCCChHHHHHHHHHHHhhhhhcccccccccccCCCCc--HHHHHHHhhhhcCCCeEEeeEEEEEe
Q 015807 318 TGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLN--IKTILDNLSKEVGSPVKIGSFFRMEV 380 (400)
Q Consensus 318 ~gKP~~iieKIveGrl~K~~~E~~LleQ~fi~D~~~t--V~~~L~~~~k~~g~~i~V~~F~R~~v 380 (400)
.|+.-..|+..++ ++..| |.+.+.+....+|.++.|.+|.+++.
T Consensus 120 -----------------~~~~~e~l~~~~~--~~~~t~tv~d~i~~~ia~iGEni~lrR~~~~~~ 165 (291)
T 1xb2_B 120 -----------------GFLNSSELSELPA--GPEREGSLKDQLALAIGKLGENMILKRAAWVKV 165 (291)
T ss_dssp -----------------EEECHHHHHTSBC--CSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEEC
T ss_pred -----------------ccCCHHHHhhccc--ccCcchhHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 0101112233333 33445 99999999999999999999999985
No 10
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.76 E-value=0.0023 Score=47.26 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHhcCCCHHHHHHHHHHhc
Q 015807 78 VNLIKQLREQTSAP-MKDVKLALVDCDWDIEAALKELRKRG 117 (400)
Q Consensus 78 ~~lIK~LR~~Tgag-m~dCKkAL~e~ngDiekAi~~LRkkG 117 (400)
-+.|.+||++ |.. -..+.+||..++||+++|++||-..+
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3678999988 542 24479999999999999999998643
No 11
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.71 E-value=0.0028 Score=46.50 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 77 QVNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 77 ~~~lIK~LR~~Tga-gm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
.-+.|.+|+++ |. .--.|.+||..++||++.|++||-..
T Consensus 11 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 11 FQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 35678999987 66 88999999999999999999999764
No 12
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.71 E-value=0.0027 Score=46.46 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhcCCCHHHHHHHHH
Q 015807 78 VNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELR 114 (400)
Q Consensus 78 ~~lIK~LR~~Tga-gm~dCKkAL~e~ngDiekAi~~LR 114 (400)
-+.|.+|+++ |. .--.|.+||..++||++.|++||-
T Consensus 13 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 13 QQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4688999987 77 888999999999999999999994
No 13
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=96.60 E-value=0.0025 Score=56.18 Aligned_cols=101 Identities=31% Similarity=0.397 Sum_probs=79.6
Q ss_pred cCCceEEEEec--CCeEEEEEEeccccceecchHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChh---------------
Q 015807 129 ATEGLLALAQN--ESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPE--------------- 191 (400)
Q Consensus 129 a~EGlV~~~~~--~~~aalVElNCETDFVArN~~F~~la~~ia~~~l~~~~~~~~~~~~~~l~~e--------------- 191 (400)
|+||+|+++++ ++.|+||||||||||||||+.|+.|+++||.+++...+...+ ...++.+
T Consensus 1 a~EG~v~~yiH~~gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~---~e~vp~~~~e~E~~i~~~~~~~ 77 (145)
T 1tfe_A 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVS---AEEIPAEELEKERQIYIQAALN 77 (145)
T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSS---GGGSCHHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccc---hhhCCHHHHHHHHHHHHHHHHh
Confidence 68999999995 678999999999999999999999999999999887654221 1222322
Q ss_pred -----------------------hhhcccccCCCCCCCCCCcHHHHHHHHHHHhcceeeeeeeEEeeeC
Q 015807 192 -----------------------YLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSAS 237 (400)
Q Consensus 192 -----------------------~l~~~~~~~~~~~~~~~~Tv~d~i~~~ia~iGENI~LrR~~~i~~~ 237 (400)
.|..+++. .+++.||+|.+.+.++++||||.||||.++...
T Consensus 78 ~gKPe~i~ekiv~Grl~Kf~~e~~Ll~Q~fv-----~d~~~tV~~~l~~~~~~iGeni~v~rf~r~~vG 141 (145)
T 1tfe_A 78 EGKPQQIAEKIAEGRLKKYLEEVVLLEQPFV-----KDDKVKVKELIQQAIAKIGENIVVRRFCRFELG 141 (145)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHBGGGSEET-----TEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhCccc-----cCCCccHHHHHHHHHHhhCCCeEEEEEEEEEeC
Confidence 23333322 124679999999999999999999999999864
No 14
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.0031 Score=47.74 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+.|.+|-++ |.+--.|++||..++||++.|++||-.
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 11 DCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 688999986 999999999999999999999999975
No 15
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.51 E-value=0.0047 Score=48.59 Aligned_cols=37 Identities=27% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 78 VNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 78 ~~lIK~LR~~Tga-gm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
-+.|.+|+++ |. .-..+.+||..++||+++|++||-.
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4689999988 54 4577899999999999999999974
No 16
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.36 E-value=0.0051 Score=43.91 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhcCCCHHHHHHHHH
Q 015807 78 VNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELR 114 (400)
Q Consensus 78 ~~lIK~LR~~Tga-gm~dCKkAL~e~ngDiekAi~~LR 114 (400)
-+.|.+|+++ |. .-..+.+||..++||+++|++||-
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3578899987 54 356689999999999999999995
No 17
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.31 E-value=0.0053 Score=46.02 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 78 VNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 78 ~~lIK~LR~~Tga-gm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
-+.|.+|+++ |. --..|.+||..++||+++|++||-.
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4578999987 54 3568899999999999999999974
No 18
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.31 E-value=0.0042 Score=44.80 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+.|++|-++ |.+--.|++||..++||++.|++||-.
T Consensus 10 ~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 10 TMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 678888877 899999999999999999999999964
No 19
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.30 E-value=0.007 Score=46.71 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
-..|.+||++=-.--..|.+||.+++||+++|++||...
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 457888888654566788999999999999999999864
No 20
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.24 E-value=0.0051 Score=46.79 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
+.|.+|-++ |.+--+|++||..++||++.|++||-..
T Consensus 11 ~~I~~L~~M-GF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 678888764 8999999999999999999999999864
No 21
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.18 E-value=0.0074 Score=45.95 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ng-DiekAi~~LRk 115 (400)
+.|.+|-++ |-+--.|++||..++| |++.|++||-.
T Consensus 21 ~~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 21 SALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 568888885 9999999999999999 99999999964
No 22
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.79 E-value=0.012 Score=46.12 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ng-DiekAi~~LRkk 116 (400)
+.|.+|-++ |.+--.|++||..++| |+|.|++||-..
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 11 SVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 688999985 9999999999999996 899999999764
No 23
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.70 E-value=0.015 Score=46.60 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
+.|.+|-++ |.+--.|++||..++||++.|++||-..
T Consensus 31 ~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 31 AALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 678999885 9999999999999999999999999764
No 24
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.60 E-value=0.012 Score=46.12 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+.|++|-++ |..--+|.+||..++||++.|++||..
T Consensus 31 e~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 688999875 899999999999999999999999974
No 25
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.51 E-value=0.02 Score=44.67 Aligned_cols=37 Identities=19% Similarity=0.057 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
+.|.+|-+. |.+--.|++||..++||++.|++||-..
T Consensus 31 ~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 31 SSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 678888876 8999999999999999999999999753
No 26
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.45 E-value=0.014 Score=44.29 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhc-CCCHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDC-DWDIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~-ngDiekAi~~LRkk 116 (400)
+.|.+|-++ |.+--.|++||..+ +||++.|++||-..
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 11 TALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 578888874 99999999999999 79999999999753
No 27
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=95.30 E-value=0.016 Score=48.10 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHH
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKEL 113 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~L 113 (400)
.++|.-++++||++-.+.++||.++|||+-.|+-+|
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 388999999999999999999999999999999876
No 28
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.94 E-value=0.029 Score=42.67 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ng-DiekAi~~LRkk 116 (400)
+.|.+|-+ -|-+--.|++||..++| |++.|++||-..
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 11 SLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp SSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 46788888 59999999999999987 999999999754
No 29
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.94 E-value=0.033 Score=39.47 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+.|.+|-++ |.+--.|++||..++ |+|.|++||-.
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHH-HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 678889885 899999999999995 99999999953
No 30
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.94 E-value=0.036 Score=44.53 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
-+.|++|-+. |.+--.|++||..++||++.|++||-.+
T Consensus 22 ~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 4689999886 9999999999999999999999999754
No 31
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.88 E-value=0.039 Score=44.24 Aligned_cols=37 Identities=19% Similarity=0.063 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
+.|.+|-++ |..--.|++||..++||++.|++||-..
T Consensus 31 e~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 31 ESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 678999887 9999999999999999999999999863
No 32
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.85 E-value=0.04 Score=44.11 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcC-CCHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCD-WDIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~n-gDiekAi~~LRkk 116 (400)
+.|.+|-++ |.+--.|++||..++ ||++.|++||-..
T Consensus 31 ~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 31 EIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 788999985 999999999999995 8999999999753
No 33
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=94.74 E-value=0.023 Score=48.37 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 76 EQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 76 ~~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
+....|.+|.+. |.+--.+||||..++||+|+|++||-.+
T Consensus 75 ~~~~~v~~L~eM-GF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 75 EFLQLMSKFKEM-GFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 345678888764 7999999999999999999999999754
No 34
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=94.67 E-value=0.072 Score=39.91 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+-++|.++...||.-.-=|.+.|++++||++.|+....+
T Consensus 7 q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 458999999999999999999999999999999998543
No 35
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.44 E-value=0.023 Score=43.08 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 80 lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
.|..|= .-|..--..++||.+++||+|.|.+||-..
T Consensus 22 ~V~~Lv-sMGFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 22 CVETVV-NMGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHH-HHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344443 347888899999999999999999999753
No 36
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=94.42 E-value=0.044 Score=46.59 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+.|++|-+. |.+--.|++||..++||++.|++||-.
T Consensus 80 ~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 80 EIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 679999885 999999999999999999999999964
No 37
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=94.38 E-value=0.046 Score=45.90 Aligned_cols=38 Identities=26% Similarity=0.142 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
+.|.+||++=-.---.|.+||..++||+++|++||-..
T Consensus 68 ~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 68 PQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 56777776422233579999999999999999999754
No 38
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=94.14 E-value=0.082 Score=39.40 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+-++|.+|..+||.-+-=|.+.|++++||+++|+.-..+
T Consensus 6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 458999999999999999999999999999999998876
No 39
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=93.73 E-value=0.096 Score=37.27 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHhcCCCHHHHHH
Q 015807 78 VNLIKQLREQTSAP-MKDVKLALVDCDWDIEAALK 111 (400)
Q Consensus 78 ~~lIK~LR~~Tgag-m~dCKkAL~e~ngDiekAi~ 111 (400)
=++|.+....||+. +-.|+.=|+.+|||++.|+.
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 37999999999976 79999999999999999974
No 40
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=92.19 E-value=0.017 Score=49.39 Aligned_cols=40 Identities=30% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHhcCCCHHHHHHHHHHhch
Q 015807 79 NLIKQLREQTSAP-MKDVKLALVDCDWDIEAALKELRKRGK 118 (400)
Q Consensus 79 ~lIK~LR~~Tgag-m~dCKkAL~e~ngDiekAi~~LRkkG~ 118 (400)
-+|.+||+-||.. ..--.+||..+|||+..|+.+|-.+-.
T Consensus 20 ~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~ 60 (129)
T 2lva_A 20 MLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERV 60 (129)
Confidence 4899999999987 667789999999999999999986543
No 41
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=93.01 E-value=0.033 Score=39.78 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+.|.+|-.. |.+-..|.+||..|+||.+.|.+||-.
T Consensus 6 eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 556666544 899999999999999999999999853
No 42
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=92.01 E-value=0.11 Score=44.16 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ng-DiekAi~~LRkk 116 (400)
..|.+|-+ -|.+...|++||..++| |++.|++||-..
T Consensus 5 ~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 5 SSVMQLAE-MGFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp HHHHHHHT-TSSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 56777776 79999999999999965 999999999764
No 43
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=91.93 E-value=0.11 Score=44.10 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHhc
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (400)
++|.+|-+ -|.|.-.|+|||..+++|.|+|++||-...
T Consensus 10 ~~v~~l~~-MGFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 10 QCVETVVN-MGYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 67777754 599999999999999999999999998653
No 44
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.48 E-value=0.28 Score=38.50 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAP-MKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgag-m~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
-++.+||+-||.- ..---.||..++||+..|+-+|-.+
T Consensus 26 ~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 26 TFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 4899999999953 4445689999999999999999864
No 45
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=91.11 E-value=0.23 Score=45.78 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.3
Q ss_pred CCCCcHHHHHHHHHHHhcceeeeeeeEEeee
Q 015807 206 GGETTVQNAITEVAAIMGENVKLRRGFLLSA 236 (400)
Q Consensus 206 ~~~~Tv~d~i~~~ia~iGENI~LrR~~~i~~ 236 (400)
+++.||++.+.+.++.+||||.|+||.++..
T Consensus 164 d~~~tV~~~l~~~~~~~G~~i~v~~F~R~~v 194 (196)
T 1aip_C 164 DDKVKVKELIQQAIAKIGENIVVRRFCRFEL 194 (196)
T ss_dssp CTTSBHHHHHHHHHHHHCSCCEEEEEEEEET
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEEEEEe
Confidence 4478999999999999999999999999974
No 46
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=90.80 E-value=0.44 Score=33.03 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
++|.+...-||++--.|+.-|+.++||++.|+...-.
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 6899999999999999999999999999999976543
No 47
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.26 E-value=0.34 Score=36.98 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 77 QVNLIKQLREQTS-APMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 77 ~~~lIK~LR~~Tg-agm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+-++|.+...-|| ...-.|+.-|+.+|||++.|+.-.-.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3478999999999 99999999999999999999986543
No 48
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.21 E-value=0.56 Score=35.13 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
-++|.+...-||+..-.|+.-|+.++||++.|+...-..
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 368999999999999999999999999999999876544
No 49
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.93 E-value=1.3 Score=32.61 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
...+.+|+++==.---..++||..++||+++|++.|-..
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 468899999854566889999999999999999988643
No 50
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=87.71 E-value=0.66 Score=33.92 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
+-|++|=. -|.+-.+..+||..++||++-|-.+||+-
T Consensus 13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 56777754 48999999999999999999999999973
No 51
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=87.50 E-value=0.68 Score=33.98 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHhc
Q 015807 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (400)
Q Consensus 80 lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (400)
-|++|=. -|..--+..+||..++||+|-|-.+||+-.
T Consensus 12 ~I~~L~~-lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 12 EIERLMS-QGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4666654 389999999999999999999999999743
No 52
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=85.44 E-value=1.2 Score=32.02 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 79 NLIKQLREQ-TSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 79 ~lIK~LR~~-Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
+.++.|-++ ........|-+|..++||+|.|+..|-..
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 467788888 67889999999999999999999998654
No 53
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=85.40 E-value=0.97 Score=32.17 Aligned_cols=30 Identities=30% Similarity=0.286 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHhcCCCHHHHHHHHHHhc
Q 015807 88 TSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (400)
Q Consensus 88 Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (400)
-|..--|..+||.-+++|++.|-++||+-.
T Consensus 14 ~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 14 QGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp TTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 488899999999999999999999999753
No 54
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.03 E-value=1.4 Score=33.40 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
++|.+.-.-||+.--.++.-|+.++||+|.|+...-+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 6799999999999999999999999999999987643
No 55
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.87 E-value=1.7 Score=32.31 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQ-TSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~-Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+.|+.|++. -+..--.-++.|.+++||+|.|++.|-+
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 678888888 4567777899999999999999999975
No 56
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=81.82 E-value=1.3 Score=32.70 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHhc
Q 015807 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (400)
Q Consensus 80 lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (400)
.|..|=. -|..-.|..+||.-+++|++-|-.+|++-.
T Consensus 10 ~Ia~L~s-mGfsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 10 EIENLMS-QGYSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4555543 489999999999999999999999999743
No 57
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=79.12 E-value=1.1 Score=51.56 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=36.2
Q ss_pred CCeEEEEeccCCCCCCCcEEEEEEEeecCCCCC-CchhhhHHHHHHHHHhhcCCc
Q 015807 239 PGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSS-FDPLKRVGSELAMHIVAQKPL 292 (400)
Q Consensus 239 ~~~v~sYvH~~~~~~~Gkig~LV~l~~~~~~~~-~~~~~~~ak~iAmHIaA~~P~ 292 (400)
+|.++.|+| |+.|+||++..+.+... .+....|+++||.++++.+|.
T Consensus 59 EGlv~~~i~-------~~~g~lvEvNcETDFVAkn~~F~~l~~~ia~~~~~~~~~ 106 (1289)
T 3avx_A 59 DGVIKTKID-------GNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKIT 106 (1289)
T ss_dssp EEEEEEEEC-------SSEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHTTTCC
T ss_pred CceEEEEEc-------CCEEEEEEEEccccceeCCHHHHHHHHHHHHHHHhcCCC
Confidence 789999997 68999999998765421 234567899999998876553
No 58
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=78.08 E-value=2.5 Score=38.41 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
-+.|++|.++ |..=-++.+||..++||++.|.++|-.
T Consensus 164 eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCAM-GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4678888666 889999999999999999999999853
No 59
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=77.89 E-value=1.9 Score=33.70 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhc
Q 015807 77 QVNLIKQLREQTSAPMKDVKLALVDC 102 (400)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ 102 (400)
.+..||.+|+.||.|+++.|+..+.+
T Consensus 19 Ki~vIK~VR~itgLgLkEAK~lVe~~ 44 (74)
T 1ctf_A 19 KVAVIKAVRGATGLGLKEAKDLVESA 44 (74)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTC
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 46899999999999999999887766
No 60
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=77.02 E-value=0.92 Score=45.40 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELR 114 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LR 114 (400)
-+.|.+|-+ -|.+--.|++||..++||.|.|++||-
T Consensus 169 ~~~i~~l~~-MGf~~~~~~~AL~a~~nn~~~A~e~L~ 204 (368)
T 1oqy_A 169 ETMLTEIMS-MGYERERVVAALRASYNNPHRAVEYLL 204 (368)
T ss_dssp HHHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467888865 589999999999999999999999995
No 61
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=75.17 E-value=0.59 Score=44.17 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELR 114 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LR 114 (400)
.++|.++..+||.-+-=|.+.|++++||++.|+....
T Consensus 199 ~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F~ 235 (250)
T 1jkg_B 199 QEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 235 (250)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5799999999999999999999999999999998844
No 62
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=74.87 E-value=6.5 Score=32.60 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
.++.|+.|-++|..-+.+.=|||-++.||+++|..+|+.
T Consensus 13 ~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~ 51 (111)
T 3k6g_A 13 AIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLAS 51 (111)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhC
Confidence 378899999999999999999999999999999999985
No 63
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.43 E-value=5.9 Score=30.21 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=32.0
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQ-TSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~-Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
+.++.|+++ -..---.-+..|+.++||+|.|++-|-.
T Consensus 20 ~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 20 QAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 678999998 4567777899999999999999999864
No 64
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=65.21 E-value=4.2 Score=29.90 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHhch
Q 015807 81 IKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKRGK 118 (400)
Q Consensus 81 IK~LR~~Tgagm~dCKkAL~e~ng-DiekAi~~LRkkG~ 118 (400)
+.+|=+ -|.+---.-+||..+++ .++.|++||.|.+.
T Consensus 13 lq~L~e-MGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 13 LQELVN-AGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp HHHHHH-HHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 555543 36666677799999986 79999999998653
No 65
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=63.72 E-value=8.4 Score=33.06 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=30.7
Q ss_pred CccceeeecccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Q 015807 58 SSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDW 104 (400)
Q Consensus 58 ~~~~~~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e~ng 104 (400)
+.|.+....|... .+..||.+|.-||.|+++.|+-.+.+..
T Consensus 57 teFdV~L~~~~~~------KI~VIK~VR~itgLgLKEAK~lVe~aP~ 97 (128)
T 1dd3_A 57 TEFDVVLKSFGQN------KIQVIKVVREITGLGLKEAKDLVEKAGS 97 (128)
T ss_dssp SSEEEEEEECTTC------HHHHHHHHHHHHCCCHHHHHHHHTTTTS
T ss_pred ceeeEEEecCCcc------hHHHHHHHHHhcCCCHHHHHHHHHhCCc
Confidence 3355666666432 3589999999999999999887776654
No 66
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=60.74 E-value=11 Score=35.54 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 015807 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELR 114 (400)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LR 114 (400)
.-+.|++|.++ |..=-++..||..+|||++.|.+.|-
T Consensus 215 ~~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L~ 251 (253)
T 3e46_A 215 YTKKIENLCAA-GFDRNAVIVALSSKSWDVETATELLL 251 (253)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 35688888777 89999999999999999999999985
No 67
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=56.01 E-value=8.5 Score=32.77 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=26.6
Q ss_pred ccceeeecccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 015807 59 SFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALV 100 (400)
Q Consensus 59 ~~~~~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~ 100 (400)
.|.+....|... .+..||..|.-||.|+++.|+-.+
T Consensus 56 eFdV~L~~~~~~------KI~VIK~VR~itgLgLkEAK~lVe 91 (122)
T 2zjq_5 56 EFDVVLIDAGAS------KINVIKEIRGITGLGLKEAKDMSE 91 (122)
T ss_pred eeEEEEecCCcc------hHHHHHHHHHhcCCCHHHHHHHHH
Confidence 345555555422 358999999999999999987644
No 68
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=55.20 E-value=8.7 Score=32.84 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=26.8
Q ss_pred ccceeeecccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 015807 59 SFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALV 100 (400)
Q Consensus 59 ~~~~~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~ 100 (400)
.|.+....|... .+..||..|.-||.|+++.|+-.+
T Consensus 59 eFdV~L~~~~~~------KI~VIK~VR~itgLgLkEAK~lVe 94 (125)
T 2j01_L 59 EFDVILKEAGAK------KLEVIKELRAITGLGLKEAKDLAE 94 (125)
T ss_pred eeEEEEeeCCcc------hHHHHHHHHHhcCCCHHHHHHHHH
Confidence 355556666422 358999999999999999987644
No 69
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=53.94 E-value=4.7 Score=40.25 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
.+.|.+|=.+ |..-..|++||..|+||.+.|.+||-..
T Consensus 326 ~eaI~rL~~m-GF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 326 KEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp HHHHHHHHHH-TCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 4677777555 9999999999999999999999999754
No 70
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=52.22 E-value=19 Score=32.30 Aligned_cols=38 Identities=26% Similarity=0.154 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
..+.|++|-+. |.+=-.|.+||..|++|.+.|..||-.
T Consensus 130 e~eaI~rL~~m-GF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 130 DDQAISRLCEL-GFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34678888766 899999999999999999999999864
No 71
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=45.01 E-value=16 Score=31.68 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=27.4
Q ss_pred cceeeecccCCCccchHHHHHHHHHHHh-cCCCHHHHHHHHHhc
Q 015807 60 FALISRNFSDQAPAATEQVNLIKQLREQ-TSAPMKDVKLALVDC 102 (400)
Q Consensus 60 ~~~~~r~~ss~~~~~~~~~~lIK~LR~~-Tgagm~dCKkAL~e~ 102 (400)
|.+....|... ..+..||.+|.- ||.|+++.|+-.+.+
T Consensus 69 FdV~L~~~~a~-----~KI~VIK~VR~i~TgLgLkEAK~lVe~a 107 (137)
T 2ftc_E 69 FTVRLTEAKPV-----DKVKLIKEIKNYVQGINLVQAKKLVESL 107 (137)
T ss_pred eEEEeeccCcc-----chhHHHHHHHHhccCCChHHHHHHHHhC
Confidence 44455555422 235899999996 999999999876655
No 72
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=43.80 E-value=15 Score=40.36 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 80 lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
.|..|- ..|.....+++||.+++||++.|++||-.
T Consensus 723 ~i~~l~-~mGf~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 723 CVTTIV-SMGFSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp HHHHHH-TTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 344442 25788899999999999999999999975
No 73
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=42.44 E-value=12 Score=28.44 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=30.8
Q ss_pred eeecccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Q 015807 63 ISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCD 103 (400)
Q Consensus 63 ~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e~n 103 (400)
..|.|+... ...+..|+.||+..|.++.+.|+.|...+
T Consensus 41 g~R~Y~~~d---l~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 41 NYRVYSREE---VEAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp SSCEECHHH---HHHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred CeeecCHHH---HHHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 457787653 55688999999899999999999998654
No 74
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=41.64 E-value=89 Score=24.02 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHh-cCCCHHHHHHHHHhcCCCHHHHHHHHHHhchhhhhhhcccc
Q 015807 75 TEQVNLIKQLREQ-TSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRT 128 (400)
Q Consensus 75 ~~~~~lIK~LR~~-Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~akA~Kka~R~ 128 (400)
.+.+++|.++|+- -..|.--..+.|...|+|+|..+..|-+.-+--.-+..+|.
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~~ldr~ 65 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERLAPTLSQLDRN 65 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTTTSCTT
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHHhcCcc
Confidence 3557899999988 46889999999999999999999999876544444444553
No 75
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=40.58 E-value=17 Score=31.16 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=39.4
Q ss_pred eeecccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 015807 63 ISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (400)
Q Consensus 63 ~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (400)
..|.|+... ...+..|+.|| ..|.++.+.|+-|...+.+.+...+.|..
T Consensus 39 g~R~Y~~~d---l~~l~~I~~lr-~~G~sl~~I~~~l~~~~~~~~~~~~~L~~ 87 (146)
T 3hh0_A 39 GHRLYTKDD---LYVLQQIQSFK-HLGFSLGEIQNIILQRDIETEVFLRQMHF 87 (146)
T ss_dssp SCEEBCHHH---HHHHHHHHHHH-HTTCCHHHHHHHHTSSEEEHHHHHHHHHH
T ss_pred CCEeeCHHH---HHHHHHHHHHH-HcCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 468887653 55688999998 68999999999998887888887777654
No 76
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=39.19 E-value=36 Score=32.45 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHhch
Q 015807 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGK 118 (400)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~ 118 (400)
-++|.+...-||++=..+..-|+.++||++.|+.-.-..+.
T Consensus 16 ~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 16 QEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 36899999999999999999999999999999998765543
No 77
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=37.09 E-value=7.1 Score=33.18 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcC
Q 015807 77 QVNLIKQLREQTSAPMKDVKLALVDCD 103 (400)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~n 103 (400)
.+..||..|.-||.|+++.|+-.+.+-
T Consensus 66 Ki~VIK~VR~itgLgLkEAK~lVe~aP 92 (121)
T 3sgf_J 66 KVAVIKAVRGATGLGLKEAKDLVESAP 92 (121)
T ss_dssp ---------------------------
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 358999999999999999987666543
No 78
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=35.04 E-value=34 Score=30.40 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHh
Q 015807 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (400)
Q Consensus 80 lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (400)
.+++|-..=-..--||-+||..+.||++.|+..|.+.
T Consensus 105 K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLqr~ 141 (162)
T 4dbg_B 105 KVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQRQ 141 (162)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3444444444557789999999999999999888753
No 79
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=33.63 E-value=42 Score=28.50 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=37.3
Q ss_pred eeeecccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHhc---CCCHHHHHHHHHHh
Q 015807 62 LISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDC---DWDIEAALKELRKR 116 (400)
Q Consensus 62 ~~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e~---ngDiekAi~~LRkk 116 (400)
...|.|+... ...+..|+.|| ..|.++.+.|+-|... +.+.+...++|+++
T Consensus 36 ~g~R~Y~~~d---l~~l~~I~~lr-~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~ 89 (142)
T 3gp4_A 36 SGVRKFGAED---LRWILFTRQMR-RAGLSIEALIDYLALFREGEHTLEARAELLKKQ 89 (142)
T ss_dssp TSCBCBCHHH---HHHHHHHHHHH-HTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CCCeeeCHHH---HHHHHHHHHHH-HcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3568887653 56688999997 5799999999988743 34566667777653
No 80
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A
Probab=32.29 E-value=28 Score=28.15 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=33.8
Q ss_pred cCCCHHHHHHHHHHhchhhhhhhcccccCCce-EEEEecCCeEEEEEEecccc
Q 015807 102 CDWDIEAALKELRKRGKVLASKKSSRTATEGL-LALAQNESKAAVIELNCETD 153 (400)
Q Consensus 102 ~ngDiekAi~~LRkkG~akA~Kka~R~a~EGl-V~~~~~~~~aalVElNCETD 153 (400)
...|++.+.+.|++.|......-..+....|. -.+++.+-.|-+|||.+.|.
T Consensus 93 ~~~dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 145 (152)
T 3huh_A 93 TSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEISQYVE 145 (152)
T ss_dssp ESSCHHHHHHHHHHTTCCCSEEEEEEEETTEEEEEEEEECTTCCEEEEEEC--
T ss_pred ecCCHHHHHHHHHHCCCeEecCCccccCCCCcEEEEEEECCCCCEEEEEeccc
Confidence 34599999999999997544322233333342 34456666799999999875
No 81
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=32.00 E-value=25 Score=25.60 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCHHHHH----HHHHhcCCCHHHHHHHHHH
Q 015807 79 NLIKQLREQTSAPMKDVK----LALVDCDWDIEAALKELRK 115 (400)
Q Consensus 79 ~lIK~LR~~Tgagm~dCK----kAL~e~ngDiekAi~~LRk 115 (400)
.++..|.+.-..|+.+|- +.|+..+|||.+|++.|+.
T Consensus 9 rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 9 RLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhhh
Confidence 456667777778888883 8999999999999999875
No 82
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.78 E-value=39 Score=28.81 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=36.7
Q ss_pred eeeecccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHhc---CCCHHHHHHHHHH
Q 015807 62 LISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDC---DWDIEAALKELRK 115 (400)
Q Consensus 62 ~~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e~---ngDiekAi~~LRk 115 (400)
...|.|+... ...+..|+.||+ .|.++.+.|+-|... +.+.+...++|++
T Consensus 50 ~g~R~Y~~~d---l~~l~~I~~lr~-~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~ 102 (148)
T 3gpv_A 50 KGDRIFNEEA---LKYLEMILCLKN-TGMPIQKIKQFIDWSMEGDSTILHRLKLMKQ 102 (148)
T ss_dssp TCCEEBCHHH---HHHHHHHHHHHT-TTCCHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCCeecCHHH---HHHHHHHHHHHH-cCCCHHHHHHHHHhhhcCCCCHHHHHHHHHH
Confidence 3467887653 566889999965 799999999999842 3456666677764
No 83
>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A
Probab=27.29 E-value=25 Score=27.57 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHhchhhhhhhcccccCCceEEEEecCCeEEEEEEe
Q 015807 105 DIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELN 149 (400)
Q Consensus 105 DiekAi~~LRkkG~akA~Kka~R~a~EGlV~~~~~~~~aalVElN 149 (400)
|++++.+.|+++|..-...-..|....|.-.+++.+-.|.+|||-
T Consensus 87 di~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~dPdG~~iEl~ 131 (133)
T 3hdp_A 87 DIQKSIEEMSQIGYTLFKKAEIAPAIDNRKVAFLFSTDIGLIELL 131 (133)
T ss_dssp CHHHHHHHHTTTTEEEEEEEEEEGGGTTEEEEEEEETTTEEEEEE
T ss_pred CHHHHHHHHHHcCCccccCCeecccCCCceEEEEECCCceEEEEe
Confidence 899999999999975433212244456765566655567899983
No 84
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=21.91 E-value=1.1e+02 Score=27.03 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcC--CC---HHHHHHHHHhcCCCHHHHHHHHHHhchhhhh
Q 015807 78 VNLIKQLREQTS--AP---MKDVKLALVDCDWDIEAALKELRKRGKVLAS 122 (400)
Q Consensus 78 ~~lIK~LR~~Tg--ag---m~dCKkAL~e~ngDiekAi~~LRkkG~akA~ 122 (400)
++.|..|=.+.| .| -.+.|+||..+.||+++|+.-.-..-..|-.
T Consensus 58 l~~V~~la~~~~~~~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R~~K~~ 107 (162)
T 4dbg_B 58 LEMVAELAGQQDPGLGAFSCQEARRAWLDRHGNLDEAVEECVRTRRRKVQ 107 (162)
T ss_dssp HHHHHHHHHHHCGGGCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcccHHHHHHHHHHccCChHHHHHHHHHHHHHHHH
Confidence 455666655554 33 3899999999999999999986544444433
No 85
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}
Probab=21.47 E-value=52 Score=27.03 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHhchhhhhhhcccccCCceEEEEecCCeEEEEEEeccccceecchHHHH
Q 015807 104 WDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQY 163 (400)
Q Consensus 104 gDiekAi~~LRkkG~akA~Kka~R~a~EGlV~~~~~~~~aalVElNCETDFVArN~~F~~ 163 (400)
.|+|.+.+.|++.|....... .....|. .+++.+-.|.++||....+--|.+..|+.
T Consensus 74 ~d~d~~~~~l~~~G~~v~~~p--~~~~~G~-~~~~~DPdG~~iel~~~~~~~a~~~~~~~ 130 (144)
T 3r6a_A 74 DSLDKFKTFLEENGAEIIRGP--SKVPTGR-NMTVRHSDGSVIEYVEHSKIEAENLYFQS 130 (144)
T ss_dssp SCHHHHHHHHHHTTCEEEEEE--EEETTEE-EEEEECTTSCEEEEEEECC----------
T ss_pred CCHHHHHHHHHHcCCEEecCC--ccCCCce-EEEEECCCCCEEEEEEcCCcchhhhhhhc
Confidence 389999999999997543221 2224574 34566667999999999998888888875
No 86
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.26 E-value=61 Score=26.59 Aligned_cols=28 Identities=14% Similarity=0.025 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHHHhc-CCCHHHHHHHHHH
Q 015807 88 TSAPMKDVKLALVDC-DWDIEAALKELRK 115 (400)
Q Consensus 88 Tgagm~dCKkAL~e~-ngDiekAi~~LRk 115 (400)
.|-.=..|-+||..+ +|||++|.+.|++
T Consensus 17 aG~ArS~~~eAl~~Ak~g~fe~A~~~l~e 45 (105)
T 2e2a_A 17 AGDARSKLLEALKAAENGDFAKADSLVVE 45 (105)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444446788999988 4999999999986
Done!