BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015808
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV7|B Chain B, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp
pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp
Length = 340
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 187/335 (55%), Gaps = 13/335 (3%)
Query: 78 DSFGRMHTYLRISLTERCNLRCHYCMPPE--GVDLT--PKPQLLSLNEILRLAYLFVTSG 133
D GR LR+S+T+RCN RC YCMP E G D PK +LL+ +E+ R+A ++ G
Sbjct: 7 DKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELG 66
Query: 134 VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 193
V KIR+TGGEP +R+D++ L+++ G++ + +TTNGL L + KL ++GL +N+S
Sbjct: 67 VKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVS 126
Query: 194 LDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 252
LD + F+ + R ++E I+ A +G N VKVN V+ +G NDD+I +E +
Sbjct: 127 LDAIDDTLFQSINNRNIKATTILEQIDYATSIGLN-VKVNVVIQKGINDDQIIPMLEYFK 185
Query: 253 DRPINIRFIEFMPF-DGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDG 311
D+ I IRFIEFM + N W+ K+V EML + + F + E AK ++
Sbjct: 186 DKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKD 245
Query: 312 HHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSE-VSLRDPLRQNASDDELREII 370
+ ITS+++ FC+ C R RL +DG F CLF + +++ +R +D+EL+E
Sbjct: 246 NGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQF 305
Query: 371 GAAVKRKKAAHAGMFDIAKTANRP-----MIHIGG 400
A + + ++ ANR M +IGG
Sbjct: 306 KALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG 340
>pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
Length = 340
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 184/335 (54%), Gaps = 13/335 (3%)
Query: 78 DSFGRMHTYLRISLTERCNLRCHYCMPPE--GVDLT--PKPQLLSLNEILRLAYLFVTSG 133
D GR L +S+T+RCN RC YCMP E G D PK +LL+ +E+ R+A ++ G
Sbjct: 7 DKLGRPIRDLALSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELG 66
Query: 134 VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 193
V KIR+TGGEP +R+D++ L+++ G++ + +TTNGL L + KL ++GL +N+S
Sbjct: 67 VKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVS 126
Query: 194 LDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 252
LD + F+ + R ++E I+ A +G N VKVN V+ +G NDD+I +E +
Sbjct: 127 LDAIDDTLFQSINNRNIKATTILEQIDYATSIGLN-VKVNVVIQKGINDDQIIPMLEYFK 185
Query: 253 DRPINIRFIEFMPF-DGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDG 311
D+ I IRFIEFM + N W+ K+V EML + + F + E AK ++
Sbjct: 186 DKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKD 245
Query: 312 HHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSE-VSLRDPLRQNASDDELREII 370
+ ITS+++ FC+ C L +DG F CLF + +++ +R +D+EL+E
Sbjct: 246 NGVQFGLITSVSQSFCSTCTAAALSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQF 305
Query: 371 GAAVKRKKAAHAGMFDIAKTANRP-----MIHIGG 400
A + + ++ ANR M +IGG
Sbjct: 306 KALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG 340
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 166 LAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG 225
L + NG+ L PKLK SGLT + +S D L FE +K ++ ++A ++
Sbjct: 398 LKLRPNGVNL-NGPPKLKMSGLTYLRLSDDLLQTDNFELF------KKFVKKMHADLDPS 450
Query: 226 YNPVKVNCVVMRGFNDDEICDFVELTR-DRPINIRFIEFMPFDGN 269
N + V+ R + I + +E T+ RP + MP DG+
Sbjct: 451 PNAISP-AVLERSNSAITIDELMEATKGSRPFPWYDVTDMPVDGS 494
>pdb|1W6T|A Chain A, Crystal Structure Of Octameric Enolase From Streptococcus
Pneumoniae
pdb|1W6T|B Chain B, Crystal Structure Of Octameric Enolase From Streptococcus
Pneumoniae
Length = 444
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 193 SLDTLVPAKFEFLTRRKGHEKVMESINAAIE-VGYNPVKVNCVVMRGFNDDEICDFVELT 251
L+T V + F R +G E +E+I AAIE GY P K V GF D +F +
Sbjct: 207 GLETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGK---DVFLGF-DCASSEFYDKE 262
Query: 252 RDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 291
R + ++ F+G V+ + L+ +V K+P
Sbjct: 263 R------KVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYP 296
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 94 RCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSG---VDKIRLTGGEPTV---- 146
R Y + PE +L PKP+ LS E + F+T+ VDK+ + G+ +
Sbjct: 117 RHGTYAEYVVLPE-ANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAA 175
Query: 147 RKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL-TSVNISLDTLVPAKFEFL 205
+ A ++KL G + +A + KL + K G +VN + P + L
Sbjct: 176 GSGVSVAAIQIAKLFGARVIATAGS----EDKLRRAKALGADETVNYTHPDW-PKEVRRL 230
Query: 206 TRRKGHEKVMESINA 220
T KG +KV++ A
Sbjct: 231 TGGKGADKVVDHTGA 245
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 211 HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP 255
E V E+ N +VGYNP V V + G+N D + +E T + P
Sbjct: 166 QEIVKETSNFIKKVGYNPKTVPFVPISGWNGD---NMIEATTNAP 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,734,140
Number of Sequences: 62578
Number of extensions: 477869
Number of successful extensions: 981
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 9
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)