Query 015808
Match_columns 400
No_of_seqs 417 out of 2527
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02951 Molybderin biosynthes 100.0 2.8E-57 6E-62 436.2 40.4 372 5-400 1-373 (373)
2 PRK13361 molybdenum cofactor b 100.0 7.6E-54 1.6E-58 408.4 37.6 324 75-400 4-329 (329)
3 COG2896 MoaA Molybdenum cofact 100.0 5.8E-53 1.2E-57 387.6 33.8 320 76-400 2-322 (322)
4 KOG2876 Molybdenum cofactor bi 100.0 1.6E-55 3.4E-60 381.9 12.9 322 76-400 2-323 (323)
5 TIGR02666 moaA molybdenum cofa 100.0 3.1E-51 6.7E-56 392.4 36.9 325 76-400 1-334 (334)
6 PRK00164 moaA molybdenum cofac 100.0 1.1E-50 2.5E-55 388.2 37.8 326 72-400 4-331 (331)
7 TIGR02668 moaA_archaeal probab 100.0 2.7E-46 5.9E-51 353.6 35.2 297 76-380 1-300 (302)
8 TIGR02109 PQQ_syn_pqqE coenzym 100.0 5.8E-38 1.3E-42 303.7 27.0 297 83-400 5-310 (358)
9 PRK05301 pyrroloquinoline quin 100.0 1.2E-37 2.6E-42 303.4 27.1 297 83-400 14-319 (378)
10 TIGR03470 HpnH hopanoid biosyn 100.0 7.6E-34 1.7E-38 268.8 22.4 268 82-378 25-294 (318)
11 PRK13758 anaerobic sulfatase-m 100.0 1.3E-32 2.7E-37 267.7 23.2 300 86-400 5-328 (370)
12 PRK13745 anaerobic sulfatase-m 100.0 3.4E-32 7.4E-37 267.1 24.9 299 85-399 13-349 (412)
13 COG0641 AslB Arylsulfatase reg 100.0 1.4E-30 3E-35 248.9 18.5 258 87-361 9-290 (378)
14 COG0535 Predicted Fe-S oxidore 100.0 6.7E-29 1.5E-33 239.6 27.6 273 80-373 14-294 (347)
15 TIGR01290 nifB nitrogenase cof 99.9 5.9E-25 1.3E-29 215.7 23.2 190 72-267 15-229 (442)
16 TIGR02493 PFLA pyruvate format 99.9 7.2E-25 1.6E-29 200.0 19.8 171 89-266 19-197 (235)
17 COG2100 Predicted Fe-S oxidore 99.9 8.9E-24 1.9E-28 189.4 21.2 207 82-289 104-324 (414)
18 TIGR02495 NrdG2 anaerobic ribo 99.9 2.1E-23 4.6E-28 184.1 21.3 161 88-255 19-183 (191)
19 PRK13762 tRNA-modifying enzyme 99.9 2.6E-23 5.7E-28 196.3 23.1 202 79-285 50-283 (322)
20 PRK14456 ribosomal RNA large s 99.9 7.4E-23 1.6E-27 195.4 24.7 184 84-274 120-326 (368)
21 PRK11145 pflA pyruvate formate 99.9 4.3E-23 9.2E-28 189.5 19.0 180 76-266 15-202 (246)
22 PF04055 Radical_SAM: Radical 99.9 1.1E-21 2.3E-26 168.3 17.0 161 89-251 1-166 (166)
23 PRK14468 ribosomal RNA large s 99.9 8.5E-21 1.8E-25 180.4 24.5 179 85-269 93-289 (343)
24 TIGR03822 AblA_like_2 lysine-2 99.9 4.4E-21 9.5E-26 181.8 22.1 199 84-293 87-297 (321)
25 PRK14469 ribosomal RNA large s 99.9 9E-21 2E-25 181.2 22.7 177 85-268 101-293 (343)
26 smart00729 Elp3 Elongator prot 99.9 4.3E-21 9.4E-26 171.7 19.2 184 86-273 2-199 (216)
27 TIGR00048 radical SAM enzyme, 99.9 1.6E-20 3.4E-25 179.4 23.0 180 86-272 106-304 (355)
28 PRK14470 ribosomal RNA large s 99.9 4.1E-20 8.8E-25 174.7 23.9 177 84-268 96-288 (336)
29 TIGR03820 lys_2_3_AblA lysine- 99.9 4.1E-20 9E-25 177.5 21.5 198 84-294 107-316 (417)
30 PRK14459 ribosomal RNA large s 99.9 8E-20 1.7E-24 173.8 22.7 197 85-288 121-346 (373)
31 PRK14455 ribosomal RNA large s 99.9 8.5E-20 1.8E-24 174.5 23.0 183 85-273 109-309 (356)
32 COG1180 PflA Pyruvate-formate 99.9 7.6E-20 1.7E-24 167.6 21.2 186 76-271 29-221 (260)
33 PRK14460 ribosomal RNA large s 99.9 9.9E-20 2.1E-24 173.7 22.5 181 85-272 102-303 (354)
34 TIGR02494 PFLE_PFLC glycyl-rad 99.8 3.1E-20 6.8E-25 175.1 17.7 151 116-271 105-264 (295)
35 TIGR03821 AblA_like_1 lysine-2 99.8 7.7E-20 1.7E-24 172.9 20.2 192 87-292 98-302 (321)
36 PRK14463 ribosomal RNA large s 99.8 2.4E-19 5.1E-24 170.8 23.3 181 85-271 103-295 (349)
37 PRK14466 ribosomal RNA large s 99.8 3E-19 6.5E-24 167.9 22.7 197 85-287 103-311 (345)
38 COG0731 Fe-S oxidoreductases [ 99.8 1.9E-19 4.2E-24 164.0 19.7 179 73-257 12-205 (296)
39 PRK07094 biotin synthase; Prov 99.8 8.1E-19 1.8E-23 167.6 24.8 207 78-288 31-242 (323)
40 TIGR00238 KamA family protein. 99.8 2.6E-19 5.6E-24 170.1 20.1 174 84-270 112-297 (331)
41 PRK14453 chloramphenicol/florf 99.8 8.1E-19 1.8E-23 166.6 22.6 177 85-268 100-295 (347)
42 cd01335 Radical_SAM Radical SA 99.8 5.9E-19 1.3E-23 155.9 20.0 180 89-272 1-187 (204)
43 PRK14467 ribosomal RNA large s 99.8 2.5E-18 5.4E-23 163.2 22.7 179 85-271 99-299 (348)
44 PRK14457 ribosomal RNA large s 99.8 2.5E-18 5.5E-23 163.1 22.4 181 85-272 101-301 (345)
45 TIGR03278 methan_mark_10 putat 99.8 8.4E-18 1.8E-22 162.3 24.5 149 113-265 50-207 (404)
46 PRK14465 ribosomal RNA large s 99.8 4.3E-18 9.3E-23 160.6 21.9 176 84-266 104-295 (342)
47 PRK09240 thiH thiamine biosynt 99.8 2.6E-18 5.6E-23 166.1 20.9 208 76-289 64-285 (371)
48 TIGR03365 Bsubt_queE 7-cyano-7 99.8 2.2E-18 4.7E-23 156.6 18.0 133 91-238 28-162 (238)
49 PRK14462 ribosomal RNA large s 99.8 1.2E-17 2.6E-22 158.4 22.1 182 85-273 110-310 (356)
50 PRK14454 ribosomal RNA large s 99.8 2.4E-17 5.2E-22 156.7 22.4 181 85-272 101-297 (342)
51 PRK15108 biotin synthase; Prov 99.8 6.7E-17 1.5E-21 154.5 24.7 207 77-288 32-249 (345)
52 TIGR00433 bioB biotin syntheta 99.8 1.4E-16 3E-21 150.4 25.8 204 81-289 23-235 (296)
53 PRK06256 biotin synthase; Vali 99.8 6.5E-17 1.4E-21 155.2 23.1 205 79-287 50-262 (336)
54 PRK10076 pyruvate formate lyas 99.8 3.6E-17 7.8E-22 145.3 18.2 150 113-267 15-171 (213)
55 TIGR02351 thiH thiazole biosyn 99.8 3.9E-17 8.4E-22 157.8 19.2 207 77-289 64-284 (366)
56 PF06463 Mob_synth_C: Molybden 99.7 9E-18 1.9E-22 136.9 11.1 126 256-382 1-127 (128)
57 PRK11194 ribosomal RNA large s 99.7 2.2E-16 4.8E-21 150.9 22.3 181 85-271 103-307 (372)
58 PLN02389 biotin synthase 99.7 3.2E-16 6.8E-21 150.9 23.2 196 88-288 85-291 (379)
59 PRK05660 HemN family oxidoredu 99.7 7.5E-16 1.6E-20 149.7 23.7 181 86-273 10-206 (378)
60 TIGR00539 hemN_rel putative ox 99.7 3E-16 6.4E-21 151.9 19.3 183 86-272 4-198 (360)
61 COG5014 Predicted Fe-S oxidore 99.7 1.7E-16 3.7E-21 130.3 14.8 158 92-256 48-214 (228)
62 TIGR03551 F420_cofH 7,8-dideme 99.7 5.5E-16 1.2E-20 148.9 20.3 208 78-288 29-263 (343)
63 PRK14461 ribosomal RNA large s 99.7 1.5E-15 3.2E-20 143.1 21.9 198 85-288 107-339 (371)
64 PF13353 Fer4_12: 4Fe-4S singl 99.7 3.2E-17 6.9E-22 137.1 7.9 109 92-202 12-123 (139)
65 PRK14464 ribosomal RNA large s 99.7 5.8E-16 1.3E-20 146.0 17.2 197 85-288 96-304 (344)
66 TIGR03699 mena_SCO4550 menaqui 99.7 1.4E-15 3E-20 146.2 20.1 208 78-288 30-261 (340)
67 PRK14338 (dimethylallyl)adenos 99.7 1.1E-14 2.5E-19 144.8 23.7 184 85-272 155-353 (459)
68 PRK08446 coproporphyrinogen II 99.7 5.3E-15 1.1E-19 142.4 20.2 179 86-272 4-196 (350)
69 PRK06267 hypothetical protein; 99.7 3.2E-14 6.9E-19 136.6 24.5 207 77-289 18-230 (350)
70 COG0820 Predicted Fe-S-cluster 99.7 1.4E-14 2.9E-19 134.8 19.9 197 85-287 101-316 (349)
71 PF13394 Fer4_14: 4Fe-4S singl 99.6 3.1E-16 6.8E-21 127.4 7.3 105 90-196 3-118 (119)
72 PRK06245 cofG FO synthase subu 99.6 1.2E-14 2.6E-19 139.4 19.4 194 87-288 14-234 (336)
73 PRK09249 coproporphyrinogen II 99.6 3.2E-14 6.8E-19 141.7 22.9 169 93-264 57-241 (453)
74 TIGR00538 hemN oxygen-independ 99.6 3E-14 6.5E-19 142.0 22.6 167 93-263 57-240 (455)
75 PRK13347 coproporphyrinogen II 99.6 5.5E-14 1.2E-18 139.9 24.1 174 86-263 52-241 (453)
76 PRK08208 coproporphyrinogen II 99.6 6.7E-14 1.4E-18 138.4 23.8 184 86-273 41-240 (430)
77 PRK05799 coproporphyrinogen II 99.6 3.3E-14 7.2E-19 138.5 20.8 178 86-271 7-196 (374)
78 TIGR00423 radical SAM domain p 99.6 5.4E-14 1.2E-18 133.2 21.5 200 86-288 6-228 (309)
79 PRK08508 biotin synthase; Prov 99.6 5E-14 1.1E-18 131.2 20.6 192 91-287 13-211 (279)
80 TIGR01125 MiaB-like tRNA modif 99.6 8.6E-14 1.9E-18 137.8 23.4 193 85-281 135-343 (430)
81 PRK14862 rimO ribosomal protei 99.6 7.9E-14 1.7E-18 138.1 22.6 192 85-285 139-358 (440)
82 PRK14334 (dimethylallyl)adenos 99.6 1.2E-13 2.7E-18 136.9 23.5 191 85-280 138-344 (440)
83 COG1964 Predicted Fe-S oxidore 99.6 4.1E-14 8.9E-19 133.4 18.2 234 102-345 78-326 (475)
84 PRK08599 coproporphyrinogen II 99.6 5.5E-14 1.2E-18 137.0 19.9 183 87-271 4-197 (377)
85 PRK07360 FO synthase subunit 2 99.6 1.1E-13 2.4E-18 134.0 20.1 186 78-266 50-255 (371)
86 COG1509 KamA Lysine 2,3-aminom 99.6 1E-13 2.2E-18 127.9 17.8 197 84-293 110-319 (369)
87 COG0502 BioB Biotin synthase a 99.6 1.8E-13 3.9E-18 127.3 19.5 197 89-289 54-257 (335)
88 PRK08207 coproporphyrinogen II 99.6 2.1E-13 4.5E-18 135.8 21.1 178 93-272 171-367 (488)
89 TIGR02026 BchE magnesium-proto 99.6 2.8E-13 6.2E-18 136.3 22.4 181 86-270 194-382 (497)
90 TIGR03700 mena_SCO4494 putativ 99.6 2.2E-13 4.7E-18 131.2 19.3 207 79-288 39-270 (351)
91 TIGR01212 radical SAM protein, 99.6 6.5E-13 1.4E-17 125.1 21.3 219 71-290 4-248 (302)
92 PRK05904 coproporphyrinogen II 99.6 9E-13 1.9E-17 126.7 22.2 184 86-273 10-202 (353)
93 TIGR01579 MiaB-like-C MiaB-lik 99.5 1.1E-12 2.3E-17 129.6 23.0 191 86-280 139-345 (414)
94 PRK12928 lipoyl synthase; Prov 99.5 9.1E-13 2E-17 122.7 21.1 187 89-283 64-261 (290)
95 TIGR00510 lipA lipoate synthas 99.5 1.5E-12 3.2E-17 121.6 22.4 189 87-282 65-263 (302)
96 TIGR03471 HpnJ hopanoid biosyn 99.5 7.9E-13 1.7E-17 132.7 22.1 181 86-270 197-382 (472)
97 PLN02428 lipoic acid synthase 99.5 1.5E-12 3.4E-17 122.8 22.3 188 89-283 106-304 (349)
98 PRK14331 (dimethylallyl)adenos 99.5 1.7E-12 3.8E-17 128.7 22.7 191 86-280 147-352 (437)
99 TIGR00089 RNA modification enz 99.5 1.3E-12 2.9E-17 129.5 21.8 192 85-280 139-346 (429)
100 PRK14339 (dimethylallyl)adenos 99.5 2.7E-12 5.8E-17 126.4 23.6 191 86-280 128-337 (420)
101 TIGR02491 NrdG anaerobic ribon 99.5 5.1E-14 1.1E-18 119.3 9.8 112 76-197 10-130 (154)
102 PRK05481 lipoyl synthase; Prov 99.5 4.1E-12 8.9E-17 118.7 23.3 171 87-265 55-235 (289)
103 PRK14332 (dimethylallyl)adenos 99.5 4.1E-12 8.8E-17 125.9 23.9 191 86-280 155-359 (449)
104 COG2108 Uncharacterized conser 99.5 3.2E-13 7E-18 122.4 14.4 158 87-258 30-195 (353)
105 PRK05628 coproporphyrinogen II 99.5 1.5E-12 3.2E-17 126.9 20.0 178 93-271 10-205 (375)
106 PRK09613 thiH thiamine biosynt 99.5 2.7E-12 5.8E-17 126.5 21.8 207 78-287 76-302 (469)
107 TIGR03550 F420_cofG 7,8-dideme 99.5 1.1E-12 2.4E-17 124.8 18.6 197 86-287 5-229 (322)
108 PRK14336 (dimethylallyl)adenos 99.5 5.8E-12 1.3E-16 124.0 23.6 183 86-272 125-322 (418)
109 PRK08444 hypothetical protein; 99.5 2.6E-12 5.6E-17 122.9 20.1 208 78-288 39-269 (353)
110 PRK14340 (dimethylallyl)adenos 99.5 6.4E-12 1.4E-16 124.5 23.5 183 86-272 150-346 (445)
111 TIGR01574 miaB-methiolase tRNA 99.5 4.7E-12 1E-16 125.6 22.4 184 86-273 146-346 (438)
112 PRK14335 (dimethylallyl)adenos 99.5 8.9E-12 1.9E-16 124.0 24.4 191 86-280 153-365 (455)
113 PRK14325 (dimethylallyl)adenos 99.5 5.4E-12 1.2E-16 125.6 22.8 191 86-280 148-356 (444)
114 PRK06294 coproporphyrinogen II 99.5 2.9E-12 6.3E-17 124.3 20.0 177 86-271 10-200 (370)
115 PRK08445 hypothetical protein; 99.5 1E-11 2.2E-16 119.0 22.7 205 80-287 33-265 (348)
116 PRK14328 (dimethylallyl)adenos 99.5 9E-12 2E-16 123.7 22.7 184 86-273 148-346 (439)
117 PRK14327 (dimethylallyl)adenos 99.5 1.7E-11 3.8E-16 122.5 24.2 190 86-280 213-419 (509)
118 TIGR01578 MiaB-like-B MiaB-lik 99.5 1.9E-11 4E-16 120.7 23.9 190 85-278 133-337 (420)
119 COG0621 MiaB 2-methylthioadeni 99.5 1.1E-11 2.3E-16 120.2 21.1 191 85-279 144-351 (437)
120 PRK14330 (dimethylallyl)adenos 99.4 2.2E-11 4.7E-16 120.8 23.1 191 86-280 141-348 (434)
121 PRK05927 hypothetical protein; 99.4 4.1E-12 9E-17 121.4 17.0 204 81-287 38-266 (350)
122 PRK14337 (dimethylallyl)adenos 99.4 3.3E-11 7.3E-16 119.7 24.1 193 85-280 148-356 (446)
123 PRK14333 (dimethylallyl)adenos 99.4 2.5E-11 5.4E-16 120.7 22.3 192 86-280 149-362 (448)
124 PRK11121 nrdG anaerobic ribonu 99.4 1.2E-12 2.5E-17 110.8 10.4 114 76-197 11-130 (154)
125 PRK14326 (dimethylallyl)adenos 99.4 5.5E-11 1.2E-15 119.4 24.1 183 87-273 159-356 (502)
126 PRK07379 coproporphyrinogen II 99.4 2.8E-11 6E-16 118.6 21.2 183 86-271 14-212 (400)
127 PRK14329 (dimethylallyl)adenos 99.4 8.2E-11 1.8E-15 117.4 24.2 183 85-272 168-371 (467)
128 PRK06582 coproporphyrinogen II 99.4 2.5E-11 5.5E-16 118.3 18.2 177 86-271 15-207 (390)
129 PRK05926 hypothetical protein; 99.4 9.9E-11 2.1E-15 112.7 21.2 185 77-265 57-260 (370)
130 COG1313 PflX Uncharacterized F 99.4 4.2E-11 9.1E-16 107.1 16.7 155 93-254 126-283 (335)
131 COG1060 ThiH Thiamine biosynth 99.4 5.5E-11 1.2E-15 113.8 18.7 200 86-288 60-281 (370)
132 PTZ00413 lipoate synthase; Pro 99.4 2.6E-10 5.5E-15 107.3 22.3 186 90-283 154-352 (398)
133 PRK08898 coproporphyrinogen II 99.3 2.1E-10 4.6E-15 112.2 22.9 182 85-272 22-219 (394)
134 PRK09058 coproporphyrinogen II 99.3 5.8E-11 1.2E-15 118.0 19.0 182 86-271 65-260 (449)
135 PRK09057 coproporphyrinogen II 99.3 9.7E-11 2.1E-15 114.1 19.8 178 86-270 8-199 (380)
136 TIGR02826 RNR_activ_nrdG3 anae 99.3 3.3E-11 7.1E-16 100.7 10.7 92 92-190 22-113 (147)
137 PRK09234 fbiC FO synthase; Rev 99.3 2.5E-10 5.4E-15 120.1 19.7 199 83-287 66-298 (843)
138 COG0602 NrdG Organic radical a 99.2 2E-11 4.4E-16 108.5 8.2 82 92-176 29-112 (212)
139 PRK09234 fbiC FO synthase; Rev 99.2 8.4E-10 1.8E-14 116.2 21.3 177 78-257 516-710 (843)
140 PRK08629 coproporphyrinogen II 99.2 1.8E-09 3.8E-14 106.7 20.7 178 85-270 55-243 (433)
141 COG0635 HemN Coproporphyrinoge 99.2 1.5E-09 3.2E-14 106.3 19.8 172 93-268 42-231 (416)
142 TIGR01210 conserved hypothetic 99.2 5.8E-09 1.3E-13 98.7 21.2 178 87-270 17-217 (313)
143 COG0320 LipA Lipoate synthase 99.1 8.7E-09 1.9E-13 91.8 18.2 202 76-284 62-271 (306)
144 COG1856 Uncharacterized homolo 99.1 1.2E-08 2.5E-13 88.1 16.6 197 85-290 10-215 (275)
145 KOG2900 Biotin synthase [Coenz 99.0 1.7E-09 3.8E-14 94.6 10.1 194 92-290 91-296 (380)
146 COG1533 SplB DNA repair photol 99.0 4.5E-08 9.7E-13 91.3 19.5 178 86-266 30-223 (297)
147 PRK00955 hypothetical protein; 99.0 1.1E-07 2.3E-12 96.2 21.6 181 86-269 293-522 (620)
148 TIGR01211 ELP3 histone acetylt 99.0 1.2E-07 2.7E-12 95.0 21.5 196 93-289 76-329 (522)
149 COG1625 Fe-S oxidoreductase, r 98.9 3.1E-08 6.7E-13 93.8 15.9 175 93-273 35-223 (414)
150 COG1242 Predicted Fe-S oxidore 98.9 2.1E-07 4.4E-12 83.4 19.2 217 73-291 12-254 (312)
151 COG1032 Fe-S oxidoreductase [E 98.9 1.3E-07 2.8E-12 95.5 18.1 187 86-277 199-407 (490)
152 PRK01254 hypothetical protein; 98.8 3.6E-07 7.7E-12 92.1 19.5 178 87-267 374-599 (707)
153 cd03174 DRE_TIM_metallolyase D 98.8 6.4E-07 1.4E-11 83.1 18.2 140 113-258 12-162 (265)
154 COG2516 Biotin synthase-relate 98.7 6.6E-07 1.4E-11 81.8 16.1 199 84-283 28-243 (339)
155 TIGR03279 cyano_FeS_chp putati 98.6 1.8E-06 3.9E-11 83.5 16.3 105 165-273 120-229 (433)
156 COG1243 ELP3 Histone acetyltra 98.4 1.9E-05 4E-10 75.8 17.4 197 93-290 75-322 (515)
157 PF13186 SPASM: Iron-sulfur cl 98.1 1.9E-06 4.1E-11 61.3 3.0 47 327-379 1-49 (64)
158 KOG2672 Lipoate synthase [Coen 97.9 0.00025 5.3E-09 63.7 12.0 188 86-281 111-311 (360)
159 COG1031 Uncharacterized Fe-S o 97.8 0.0035 7.5E-08 60.5 19.9 193 76-272 172-412 (560)
160 COG1244 Predicted Fe-S oxidore 97.8 0.0055 1.2E-07 56.7 19.7 200 87-291 49-282 (358)
161 KOG1160 Fe-S oxidoreductase [E 97.5 0.00073 1.6E-08 64.5 10.5 196 87-289 285-511 (601)
162 PRK11858 aksA trans-homoaconit 97.5 0.0078 1.7E-07 58.7 17.9 140 113-257 19-160 (378)
163 cd07939 DRE_TIM_NifV Streptomy 97.4 0.016 3.5E-07 53.5 17.6 139 114-257 14-154 (259)
164 cd07948 DRE_TIM_HCS Saccharomy 97.4 0.02 4.4E-07 52.9 17.9 139 113-257 15-156 (262)
165 TIGR02090 LEU1_arch isopropylm 97.4 0.016 3.5E-07 56.2 18.1 140 113-257 15-156 (363)
166 COG4277 Predicted DNA-binding 97.2 0.014 3E-07 53.4 13.5 187 81-273 50-265 (404)
167 TIGR02660 nifV_homocitr homoci 96.9 0.067 1.4E-06 52.0 17.2 140 113-257 16-157 (365)
168 KOG4355 Predicted Fe-S oxidore 96.7 0.065 1.4E-06 50.7 14.5 185 88-281 190-395 (547)
169 cd07941 DRE_TIM_LeuA3 Desulfob 96.6 0.22 4.8E-06 46.3 17.9 141 113-257 13-166 (273)
170 cd07940 DRE_TIM_IPMS 2-isoprop 96.6 0.26 5.7E-06 45.7 18.2 137 114-257 14-158 (268)
171 cd07943 DRE_TIM_HOA 4-hydroxy- 96.6 0.29 6.4E-06 45.2 18.2 132 113-258 15-157 (263)
172 PRK08195 4-hyroxy-2-oxovalerat 96.6 0.32 7E-06 46.6 18.8 130 113-258 18-160 (337)
173 TIGR03217 4OH_2_O_val_ald 4-hy 96.5 0.36 7.9E-06 46.2 18.8 132 113-258 17-159 (333)
174 PRK09389 (R)-citramalate synth 96.3 0.33 7.2E-06 49.0 18.2 141 113-258 17-159 (488)
175 PF00682 HMGL-like: HMGL-like 96.3 0.092 2E-06 47.7 12.9 167 115-292 9-181 (237)
176 cd07938 DRE_TIM_HMGL 3-hydroxy 96.3 0.48 1E-05 44.1 17.6 141 112-257 12-164 (274)
177 cd07944 DRE_TIM_HOA_like 4-hyd 96.0 0.75 1.6E-05 42.6 17.6 130 113-257 13-153 (266)
178 PLN02746 hydroxymethylglutaryl 96.0 0.83 1.8E-05 43.9 18.2 139 112-257 60-212 (347)
179 PRK14040 oxaloacetate decarbox 95.9 0.51 1.1E-05 48.8 17.1 131 114-258 21-171 (593)
180 PRK12331 oxaloacetate decarbox 95.8 0.61 1.3E-05 46.5 16.9 131 114-258 20-170 (448)
181 PRK00915 2-isopropylmalate syn 95.6 0.84 1.8E-05 46.5 17.4 141 113-257 19-164 (513)
182 KOG2535 RNA polymerase II elon 95.6 0.17 3.7E-06 47.3 11.1 137 119-256 152-317 (554)
183 PRK14041 oxaloacetate decarbox 95.4 0.84 1.8E-05 45.7 16.3 131 114-258 19-169 (467)
184 KOG2492 CDK5 activator-binding 95.4 0.49 1.1E-05 45.4 13.7 169 87-260 222-428 (552)
185 PRK05692 hydroxymethylglutaryl 95.3 2.4 5.2E-05 39.7 18.0 138 113-257 19-170 (287)
186 TIGR01108 oadA oxaloacetate de 95.2 1.2 2.5E-05 46.1 17.0 131 114-258 15-165 (582)
187 PRK09282 pyruvate carboxylase 95.0 1.2 2.6E-05 46.1 16.5 130 115-258 21-170 (592)
188 cd07945 DRE_TIM_CMS Leptospira 94.9 2.9 6.3E-05 39.0 17.4 142 112-257 11-162 (280)
189 TIGR00977 LeuA_rel 2-isopropyl 94.7 2.4 5.3E-05 43.2 17.5 141 113-258 16-170 (526)
190 cd07937 DRE_TIM_PC_TC_5S Pyruv 94.4 2.4 5.1E-05 39.5 15.6 131 114-258 15-165 (275)
191 PRK12344 putative alpha-isopro 94.3 2.6 5.7E-05 43.0 16.8 141 113-257 20-173 (524)
192 PLN02321 2-isopropylmalate syn 94.2 6.4 0.00014 41.1 19.4 142 113-257 101-255 (632)
193 PLN03228 methylthioalkylmalate 93.9 4.6 0.0001 40.9 17.3 142 113-257 99-254 (503)
194 PRK12330 oxaloacetate decarbox 93.8 4.1 8.8E-05 41.2 16.6 131 114-258 21-171 (499)
195 COG0119 LeuA Isopropylmalate/h 92.7 5 0.00011 39.6 15.1 168 112-291 16-189 (409)
196 TIGR03849 arch_ComA phosphosul 92.6 7.7 0.00017 35.0 16.9 134 117-266 9-158 (237)
197 PRK15452 putative protease; Pr 91.7 4.8 0.0001 40.1 13.8 134 118-265 12-170 (443)
198 TIGR00973 leuA_bact 2-isopropy 91.5 13 0.00028 37.8 16.9 139 113-257 16-161 (494)
199 cd07947 DRE_TIM_Re_CS Clostrid 91.2 13 0.00028 34.7 15.6 133 117-257 18-164 (279)
200 PRK15447 putative protease; Pr 90.5 8.1 0.00018 36.4 13.6 126 116-251 11-153 (301)
201 PRK12581 oxaloacetate decarbox 90.3 19 0.00041 36.1 16.4 131 114-258 29-179 (468)
202 cd07942 DRE_TIM_LeuA Mycobacte 89.4 19 0.0004 33.7 18.1 140 112-254 15-168 (284)
203 PF02679 ComA: (2R)-phospho-3- 88.5 4.6 9.9E-05 36.7 9.7 156 117-291 22-196 (244)
204 PRK08091 ribulose-phosphate 3- 87.8 20 0.00044 32.2 15.2 116 117-250 22-140 (228)
205 PF05853 DUF849: Prokaryotic p 87.1 9.8 0.00021 35.3 11.4 134 114-256 20-163 (272)
206 COG0826 Collagenase and relate 86.4 11 0.00025 36.2 11.7 97 145-251 46-159 (347)
207 TIGR01496 DHPS dihydropteroate 85.1 31 0.00067 31.7 15.1 132 112-265 15-171 (257)
208 cd00953 KDG_aldolase KDG (2-ke 84.7 6.1 0.00013 36.8 8.9 108 115-232 15-127 (279)
209 cd00952 CHBPH_aldolase Trans-o 84.5 5.6 0.00012 37.7 8.7 107 115-232 24-141 (309)
210 cd01299 Met_dep_hydrolase_A Me 84.1 38 0.00082 32.2 14.5 69 117-190 117-197 (342)
211 PRK14847 hypothetical protein; 83.3 44 0.00094 32.0 14.9 139 113-253 47-198 (333)
212 COG5016 Pyruvate/oxaloacetate 83.2 14 0.0003 35.9 10.4 81 116-197 152-235 (472)
213 COG2875 CobM Precorrin-4 methy 83.0 4.5 9.8E-05 36.1 6.6 57 113-172 55-111 (254)
214 PTZ00445 p36-lilke protein; Pr 82.6 9.8 0.00021 33.7 8.6 50 119-170 28-98 (219)
215 PRK14042 pyruvate carboxylase 82.6 65 0.0014 33.5 16.0 131 114-258 20-170 (596)
216 COG0329 DapA Dihydrodipicolina 82.5 12 0.00027 35.2 10.0 78 115-193 20-106 (299)
217 PLN02417 dihydrodipicolinate s 82.2 6.7 0.00014 36.6 8.1 102 114-225 16-126 (280)
218 PRK03170 dihydrodipicolinate s 82.1 6.8 0.00015 36.7 8.2 108 114-232 16-133 (292)
219 TIGR00620 sporelyase spore pho 80.8 26 0.00055 30.8 10.5 79 150-233 12-91 (199)
220 PRK12999 pyruvate carboxylase; 80.8 96 0.0021 35.2 17.5 131 114-258 549-707 (1146)
221 cd07939 DRE_TIM_NifV Streptomy 80.7 46 0.001 30.5 14.3 29 150-179 141-170 (259)
222 cd00408 DHDPS-like Dihydrodipi 80.3 16 0.00034 33.9 9.9 108 114-232 12-129 (281)
223 COG0036 Rpe Pentose-5-phosphat 80.1 43 0.00094 29.9 14.7 114 117-250 13-131 (220)
224 PF05913 DUF871: Bacterial pro 79.6 3.2 6.9E-05 40.1 5.0 144 118-266 12-178 (357)
225 PRK06769 hypothetical protein; 78.4 20 0.00042 30.7 9.2 50 144-195 27-83 (173)
226 PF06189 5-nucleotidase: 5'-nu 78.3 55 0.0012 30.0 14.3 126 118-259 46-215 (264)
227 PRK14042 pyruvate carboxylase 78.3 64 0.0014 33.6 14.2 120 116-253 150-272 (596)
228 cd07948 DRE_TIM_HCS Saccharomy 78.1 57 0.0012 30.1 13.2 99 119-235 111-217 (262)
229 cd00951 KDGDH 5-dehydro-4-deox 78.0 60 0.0013 30.3 13.6 108 114-233 15-132 (289)
230 cd06543 GH18_PF-ChiA-like PF-C 77.9 62 0.0013 30.4 15.4 131 128-268 20-181 (294)
231 PRK04147 N-acetylneuraminate l 77.5 12 0.00026 35.1 8.2 109 113-232 17-136 (293)
232 TIGR00674 dapA dihydrodipicoli 77.5 11 0.00024 35.1 8.0 108 114-232 13-130 (285)
233 TIGR00126 deoC deoxyribose-pho 77.4 52 0.0011 29.3 16.4 130 113-259 11-149 (211)
234 PF12345 DUF3641: Protein of u 77.3 1.2 2.6E-05 36.0 1.2 18 331-348 71-88 (134)
235 TIGR00683 nanA N-acetylneurami 77.0 14 0.0003 34.7 8.4 107 115-232 16-134 (290)
236 TIGR02313 HpaI-NOT-DapA 2,4-di 76.9 12 0.00027 35.1 8.1 108 114-232 15-133 (294)
237 PLN02334 ribulose-phosphate 3- 76.7 52 0.0011 29.5 11.9 117 124-257 79-197 (229)
238 PRK08745 ribulose-phosphate 3- 76.5 57 0.0012 29.3 15.6 114 117-249 13-131 (223)
239 COG0007 CysG Uroporphyrinogen- 76.5 9.6 0.00021 34.6 6.8 53 115-169 63-115 (244)
240 PRK12330 oxaloacetate decarbox 76.2 94 0.002 31.6 14.4 118 117-253 152-275 (499)
241 PRK12331 oxaloacetate decarbox 76.0 76 0.0017 31.8 13.7 100 117-226 151-254 (448)
242 PRK08005 epimerase; Validated 75.9 57 0.0012 29.0 14.0 113 117-249 10-127 (210)
243 TIGR01235 pyruv_carbox pyruvat 75.2 74 0.0016 36.0 14.6 95 99-197 670-768 (1143)
244 PF00701 DHDPS: Dihydrodipicol 75.1 32 0.00069 32.1 10.4 108 114-232 16-133 (289)
245 PRK15473 cbiF cobalt-precorrin 74.9 68 0.0015 29.4 14.9 51 117-169 64-114 (257)
246 COG5016 Pyruvate/oxaloacetate 74.7 39 0.00084 33.0 10.5 157 116-291 24-199 (472)
247 TIGR03249 KdgD 5-dehydro-4-deo 74.6 76 0.0016 29.7 15.4 108 114-232 20-136 (296)
248 TIGR01108 oadA oxaloacetate de 74.3 88 0.0019 32.5 14.0 118 117-253 146-267 (582)
249 PLN02540 methylenetetrahydrofo 74.2 1E+02 0.0022 31.8 14.2 58 115-173 68-136 (565)
250 cd00950 DHDPS Dihydrodipicolin 73.8 27 0.00059 32.4 9.6 108 114-232 15-132 (284)
251 PRK08883 ribulose-phosphate 3- 73.3 69 0.0015 28.7 15.4 114 117-249 9-127 (220)
252 cd07943 DRE_TIM_HOA 4-hydroxy- 72.9 77 0.0017 29.1 13.9 59 120-180 112-173 (263)
253 PF10566 Glyco_hydro_97: Glyco 72.8 27 0.00058 32.4 8.9 79 114-194 26-127 (273)
254 PRK14057 epimerase; Provisiona 72.1 80 0.0017 28.9 15.0 116 117-249 29-153 (254)
255 PRK03739 2-isopropylmalate syn 71.8 1.3E+02 0.0028 31.1 15.3 139 112-253 44-196 (552)
256 cd03319 L-Ala-DL-Glu_epimerase 71.7 91 0.002 29.4 15.0 136 118-260 134-284 (316)
257 PF00834 Ribul_P_3_epim: Ribul 71.3 44 0.00095 29.5 9.6 111 119-249 11-126 (201)
258 PRK03620 5-dehydro-4-deoxygluc 71.2 19 0.00042 33.9 7.9 107 114-232 22-138 (303)
259 cd00945 Aldolase_Class_I Class 71.2 66 0.0014 27.5 15.3 123 118-257 11-144 (201)
260 cd04733 OYE_like_2_FMN Old yel 71.0 38 0.00083 32.4 10.0 81 114-195 136-258 (338)
261 PRK05692 hydroxymethylglutaryl 70.8 93 0.002 29.1 13.1 21 119-139 154-174 (287)
262 PRK14040 oxaloacetate decarbox 70.7 1.2E+02 0.0027 31.5 14.1 118 118-253 153-273 (593)
263 PRK09722 allulose-6-phosphate 70.7 82 0.0018 28.4 15.1 113 118-250 13-130 (229)
264 cd00954 NAL N-Acetylneuraminic 70.2 22 0.00048 33.2 8.1 79 114-193 15-103 (288)
265 cd07937 DRE_TIM_PC_TC_5S Pyruv 70.1 93 0.002 28.8 14.5 123 119-257 117-250 (275)
266 cd02071 MM_CoA_mut_B12_BD meth 69.9 29 0.00064 27.7 7.7 71 115-189 35-105 (122)
267 cd04735 OYE_like_4_FMN Old yel 69.0 1E+02 0.0022 29.7 12.6 83 114-196 131-258 (353)
268 cd07940 DRE_TIM_IPMS 2-isoprop 68.9 96 0.0021 28.5 13.6 58 120-179 114-174 (268)
269 PRK14041 oxaloacetate decarbox 68.7 1.4E+02 0.0029 30.2 14.1 118 117-253 150-271 (467)
270 PF00809 Pterin_bind: Pterin b 68.6 63 0.0014 28.6 10.2 134 113-266 12-171 (210)
271 TIGR00970 leuA_yeast 2-isoprop 68.6 1.5E+02 0.0033 30.7 15.3 142 112-256 40-198 (564)
272 COG1105 FruK Fructose-1-phosph 68.3 1.1E+02 0.0024 29.0 14.5 108 111-229 105-218 (310)
273 cd07944 DRE_TIM_HOA_like 4-hyd 68.0 1E+02 0.0022 28.5 12.8 103 118-233 107-216 (266)
274 TIGR01463 mtaA_cmuA methyltran 67.9 1.1E+02 0.0025 29.1 13.3 65 127-196 187-263 (340)
275 COG1735 Php Predicted metal-de 67.6 1.1E+02 0.0024 28.8 11.9 109 116-226 109-248 (316)
276 PRK09282 pyruvate carboxylase 66.9 1.7E+02 0.0036 30.6 14.4 118 117-253 151-272 (592)
277 PF13344 Hydrolase_6: Haloacid 66.9 7.9 0.00017 29.9 3.6 48 137-188 8-57 (101)
278 PRK11858 aksA trans-homoaconit 66.9 1.3E+02 0.0028 29.3 14.6 117 117-253 142-264 (378)
279 PRK13523 NADPH dehydrogenase N 66.8 52 0.0011 31.6 9.9 82 114-196 129-250 (337)
280 cd05015 SIS_PGI_1 Phosphogluco 66.5 35 0.00076 28.7 7.8 84 118-203 3-91 (158)
281 TIGR02660 nifV_homocitr homoci 66.2 1.3E+02 0.0029 29.1 14.1 116 118-253 140-261 (365)
282 TIGR02090 LEU1_arch isopropylm 66.2 1.3E+02 0.0029 29.1 14.4 22 118-139 139-160 (363)
283 TIGR03275 methan_mark_8 putati 65.9 1E+02 0.0023 27.9 12.5 145 113-263 37-195 (259)
284 COG1526 FdhD Uncharacterized p 65.9 1.1E+02 0.0024 28.2 11.9 113 85-198 84-232 (266)
285 PRK12999 pyruvate carboxylase; 65.0 1.6E+02 0.0034 33.5 14.4 121 115-253 686-809 (1146)
286 cd02801 DUS_like_FMN Dihydrour 65.0 55 0.0012 29.1 9.3 75 118-193 65-158 (231)
287 PRK12581 oxaloacetate decarbox 64.9 1.6E+02 0.0035 29.7 14.4 118 117-253 160-281 (468)
288 PLN02645 phosphoglycolate phos 63.8 20 0.00043 33.9 6.4 70 114-187 13-86 (311)
289 cd00537 MTHFR Methylenetetrahy 63.8 1.2E+02 0.0027 27.9 13.4 121 116-251 69-211 (274)
290 COG3589 Uncharacterized conser 63.3 58 0.0013 31.0 9.0 76 118-195 14-100 (360)
291 smart00876 BATS Biotin and Thi 63.2 33 0.00071 26.1 6.4 72 115-187 18-92 (94)
292 COG1809 (2R)-phospho-3-sulfola 62.6 86 0.0019 28.0 9.3 100 115-225 55-166 (258)
293 cd02932 OYE_YqiM_FMN Old yello 62.4 61 0.0013 31.0 9.6 83 114-197 141-265 (336)
294 COG1453 Predicted oxidoreducta 62.2 51 0.0011 31.8 8.5 109 117-238 90-208 (391)
295 TIGR00640 acid_CoA_mut_C methy 62.1 52 0.0011 26.8 7.7 72 115-190 38-109 (132)
296 PRK00507 deoxyribose-phosphate 61.4 1.2E+02 0.0027 27.1 15.3 128 114-257 16-151 (221)
297 cd00959 DeoC 2-deoxyribose-5-p 61.2 1.1E+02 0.0025 26.7 15.9 128 115-260 12-149 (203)
298 cd02933 OYE_like_FMN Old yello 61.2 1.6E+02 0.0034 28.3 13.5 84 113-196 138-264 (338)
299 PLN02746 hydroxymethylglutaryl 61.2 1.6E+02 0.0035 28.4 14.0 125 119-257 161-305 (347)
300 KOG2367 Alpha-isopropylmalate 60.5 1.9E+02 0.0041 29.0 14.6 170 112-293 71-249 (560)
301 cd03310 CIMS_like CIMS - Cobal 59.7 1.6E+02 0.0034 27.8 12.3 113 122-255 153-285 (321)
302 TIGR00262 trpA tryptophan synt 59.5 1.1E+02 0.0023 28.1 10.2 98 166-265 13-125 (256)
303 PF00682 HMGL-like: HMGL-like 59.2 1.2E+02 0.0027 27.0 10.6 26 150-176 139-165 (237)
304 PRK06252 methylcobalamin:coenz 58.1 1.7E+02 0.0037 27.8 12.7 61 129-196 189-261 (339)
305 COG0685 MetF 5,10-methylenetet 57.8 1.4E+02 0.003 28.0 10.8 46 115-160 87-139 (291)
306 PRK11557 putative DNA-binding 57.4 1.1E+02 0.0024 28.1 10.2 91 116-226 112-203 (278)
307 cd02930 DCR_FMN 2,4-dienoyl-Co 57.3 64 0.0014 31.1 8.8 82 114-195 124-246 (353)
308 COG0813 DeoD Purine-nucleoside 57.0 1.3E+02 0.0029 26.8 9.6 106 139-256 62-176 (236)
309 COG0159 TrpA Tryptophan syntha 56.8 1.6E+02 0.0036 27.1 13.3 87 179-266 37-133 (265)
310 TIGR03128 RuMP_HxlA 3-hexulose 56.8 1.3E+02 0.0029 26.1 14.2 99 116-232 8-108 (206)
311 cd03174 DRE_TIM_metallolyase D 56.7 1.5E+02 0.0033 26.8 13.7 124 118-256 113-247 (265)
312 TIGR00284 dihydropteroate synt 56.2 2.4E+02 0.0051 28.8 16.1 110 120-235 165-289 (499)
313 PHA02031 putative DnaG-like pr 56.1 64 0.0014 29.7 7.8 63 161-237 180-243 (266)
314 TIGR01303 IMP_DH_rel_1 IMP deh 56.0 1.6E+02 0.0034 29.8 11.5 101 120-226 224-329 (475)
315 PF01261 AP_endonuc_2: Xylose 55.6 75 0.0016 27.3 8.4 96 119-224 70-185 (213)
316 PF02219 MTHFR: Methylenetetra 55.6 1E+02 0.0023 28.7 9.6 43 117-159 82-135 (287)
317 cd02940 DHPD_FMN Dihydropyrimi 55.5 1E+02 0.0022 29.0 9.6 107 118-224 111-248 (299)
318 PF11946 DUF3463: Domain of un 54.9 4.6 9.9E-05 33.0 0.3 60 324-399 57-116 (138)
319 PRK07329 hypothetical protein; 54.7 1.1E+02 0.0024 27.7 9.5 67 150-226 167-240 (246)
320 cd06570 GH20_chitobiase-like_1 54.2 43 0.00094 31.7 6.8 60 112-173 10-93 (311)
321 TIGR00677 fadh2_euk methylenet 54.1 1.9E+02 0.0041 27.0 14.1 55 117-171 71-137 (281)
322 PRK07998 gatY putative fructos 54.0 1.9E+02 0.0041 27.0 14.3 137 116-263 25-174 (283)
323 cd02932 OYE_YqiM_FMN Old yello 53.6 48 0.001 31.7 7.2 10 150-159 243-252 (336)
324 cd04747 OYE_like_5_FMN Old yel 53.6 1.3E+02 0.0028 29.2 10.1 81 114-195 131-257 (361)
325 TIGR03573 WbuX N-acetyl sugar 53.3 1.9E+02 0.0041 27.8 11.2 92 98-196 23-123 (343)
326 TIGR00542 hxl6Piso_put hexulos 52.7 1.2E+02 0.0025 28.0 9.5 79 118-198 92-185 (279)
327 PRK13663 hypothetical protein; 52.6 2.3E+02 0.005 28.0 11.2 73 189-264 67-142 (493)
328 PF01136 Peptidase_U32: Peptid 52.1 93 0.002 27.8 8.5 68 120-196 2-70 (233)
329 TIGR01465 cobM_cbiF precorrin- 52.1 1.7E+02 0.0037 25.9 14.4 53 117-171 55-107 (229)
330 TIGR01235 pyruv_carbox pyruvat 51.7 4.1E+02 0.009 30.2 16.4 131 114-258 547-705 (1143)
331 COG0279 GmhA Phosphoheptose is 51.5 1.5E+02 0.0033 25.2 10.2 97 135-249 42-155 (176)
332 PRK03692 putative UDP-N-acetyl 51.3 1.9E+02 0.0042 26.3 10.4 78 119-201 91-172 (243)
333 PRK05286 dihydroorotate dehydr 51.2 2.1E+02 0.0045 27.5 11.1 68 187-257 170-240 (344)
334 PTZ00170 D-ribulose-5-phosphat 51.2 1.8E+02 0.004 26.0 15.2 113 117-248 16-134 (228)
335 KOG3111 D-ribulose-5-phosphate 51.2 1.7E+02 0.0037 25.6 13.3 114 118-249 15-133 (224)
336 PRK13209 L-xylulose 5-phosphat 51.1 1E+02 0.0022 28.4 8.8 79 118-198 97-190 (283)
337 COG1751 Uncharacterized conser 50.9 1.5E+02 0.0032 24.9 11.3 115 113-237 7-134 (186)
338 COG2248 Predicted hydrolase (m 50.8 1.3E+02 0.0028 27.6 8.7 85 171-258 186-272 (304)
339 PRK07328 histidinol-phosphatas 50.7 1E+02 0.0022 28.4 8.6 69 148-227 177-253 (269)
340 TIGR00646 MG010 DNA primase-re 50.4 1.9E+02 0.0041 25.9 9.8 74 148-237 117-191 (218)
341 cd02742 GH20_hexosaminidase Be 50.3 51 0.0011 31.1 6.7 53 113-167 9-89 (303)
342 cd06564 GH20_DspB_LnbB-like Gl 49.9 48 0.001 31.6 6.5 27 113-139 10-36 (326)
343 TIGR01163 rpe ribulose-phospha 49.9 1.7E+02 0.0037 25.4 11.1 62 124-191 70-131 (210)
344 COG0821 gcpE 1-hydroxy-2-methy 49.9 2.4E+02 0.0052 27.0 14.1 130 131-264 93-262 (361)
345 TIGR01685 MDP-1 magnesium-depe 49.6 1.7E+02 0.0036 25.1 10.4 35 136-172 36-70 (174)
346 cd04734 OYE_like_3_FMN Old yel 49.4 2.5E+02 0.0054 27.0 14.1 138 114-261 128-314 (343)
347 TIGR02146 LysS_fung_arch homoc 49.2 2.4E+02 0.0052 26.8 18.4 137 114-257 14-154 (344)
348 cd02803 OYE_like_FMN_family Ol 49.0 2.4E+02 0.0051 26.7 14.5 83 113-196 127-251 (327)
349 KOG0369 Pyruvate carboxylase [ 48.9 3.5E+02 0.0076 28.6 12.7 118 149-288 94-215 (1176)
350 smart00642 Aamy Alpha-amylase 48.8 70 0.0015 27.2 6.7 51 208-258 15-86 (166)
351 TIGR00737 nifR3_yhdG putative 48.7 1.5E+02 0.0032 28.1 9.7 75 118-193 73-167 (319)
352 TIGR00262 trpA tryptophan synt 48.6 2.2E+02 0.0047 26.1 13.0 112 123-249 105-218 (256)
353 PRK13753 dihydropteroate synth 48.1 2.1E+02 0.0046 26.7 10.1 80 112-197 17-106 (279)
354 PRK08883 ribulose-phosphate 3- 48.0 2E+02 0.0044 25.6 11.8 119 120-258 68-191 (220)
355 COG0656 ARA1 Aldo/keto reducta 47.8 1.4E+02 0.003 27.9 8.8 127 122-266 30-169 (280)
356 TIGR00559 pdxJ pyridoxine 5'-p 47.5 2.2E+02 0.0047 25.8 11.5 118 120-250 73-202 (237)
357 PRK13125 trpA tryptophan synth 47.5 2.2E+02 0.0047 25.8 13.1 114 121-249 89-205 (244)
358 TIGR00676 fadh2 5,10-methylene 47.4 2.3E+02 0.005 26.1 14.4 121 115-249 68-206 (272)
359 COG3246 Uncharacterized conser 47.3 1.3E+02 0.0028 28.1 8.3 60 113-172 22-86 (298)
360 cd00003 PNPsynthase Pyridoxine 47.0 2.2E+02 0.0048 25.7 10.9 90 150-249 112-201 (234)
361 COG2185 Sbm Methylmalonyl-CoA 46.5 1.4E+02 0.0031 24.7 7.7 67 117-190 50-119 (143)
362 TIGR03217 4OH_2_O_val_ald 4-hy 46.1 2.8E+02 0.006 26.6 12.9 58 121-179 115-174 (333)
363 PRK12677 xylose isomerase; Pro 46.1 3E+02 0.0065 27.0 15.6 93 114-226 28-128 (384)
364 cd02810 DHOD_DHPD_FMN Dihydroo 45.9 1.9E+02 0.0042 26.7 9.9 75 118-193 109-196 (289)
365 TIGR02247 HAD-1A3-hyp Epoxide 45.8 88 0.0019 27.3 7.2 82 143-226 92-190 (211)
366 cd07945 DRE_TIM_CMS Leptospira 45.7 2.5E+02 0.0055 26.1 14.4 122 119-256 114-249 (280)
367 PRK13111 trpA tryptophan synth 45.6 2.5E+02 0.0053 25.8 11.6 92 166-261 15-123 (258)
368 PRK09936 hypothetical protein; 45.5 2.6E+02 0.0057 26.2 14.2 142 113-258 31-205 (296)
369 PRK11572 copper homeostasis pr 45.4 1.1E+02 0.0024 28.0 7.6 67 125-194 133-199 (248)
370 PF10126 Nit_Regul_Hom: Unchar 45.2 1.5E+02 0.0032 23.2 7.5 79 167-249 8-87 (110)
371 TIGR01509 HAD-SF-IA-v3 haloaci 45.2 87 0.0019 26.3 6.9 31 144-176 84-114 (183)
372 PRK08207 coproporphyrinogen II 45.0 2.8E+02 0.0061 28.2 11.4 108 115-235 230-359 (488)
373 cd02801 DUS_like_FMN Dihydrour 45.0 1E+02 0.0022 27.4 7.6 21 121-141 139-159 (231)
374 PF03740 PdxJ: Pyridoxal phosp 44.7 2.4E+02 0.0053 25.6 9.7 117 120-249 74-204 (239)
375 PTZ00170 D-ribulose-5-phosphat 44.7 1.9E+02 0.0042 25.9 9.3 121 119-259 74-198 (228)
376 cd07941 DRE_TIM_LeuA3 Desulfob 44.6 2.6E+02 0.0056 25.8 13.1 94 119-226 118-221 (273)
377 PRK13210 putative L-xylulose 5 44.5 1.7E+02 0.0037 26.8 9.2 78 118-197 92-184 (284)
378 PLN02433 uroporphyrinogen deca 44.4 2.9E+02 0.0064 26.4 14.6 60 131-196 190-261 (345)
379 cd02803 OYE_like_FMN_family Ol 44.4 1.2E+02 0.0027 28.6 8.4 24 118-141 226-249 (327)
380 TIGR01990 bPGM beta-phosphoglu 44.1 58 0.0013 27.5 5.7 29 144-174 86-114 (185)
381 PRK13523 NADPH dehydrogenase N 43.5 82 0.0018 30.2 7.0 26 117-142 224-249 (337)
382 cd01973 Nitrogenase_VFe_beta_l 43.2 1.8E+02 0.004 29.2 9.7 114 138-261 66-194 (454)
383 PRK15452 putative protease; Pr 42.7 1.8E+02 0.0038 29.2 9.3 78 177-258 14-92 (443)
384 cd02931 ER_like_FMN Enoate red 42.7 2.4E+02 0.0051 27.6 10.2 84 113-196 136-275 (382)
385 COG0036 Rpe Pentose-5-phosphat 42.7 2.5E+02 0.0054 25.1 12.7 126 119-262 70-197 (220)
386 PRK00915 2-isopropylmalate syn 42.6 3.9E+02 0.0085 27.3 14.6 56 184-253 219-275 (513)
387 PF01436 NHL: NHL repeat; Int 42.4 29 0.00062 19.7 2.3 18 332-349 6-23 (28)
388 PF00290 Trp_syntA: Tryptophan 42.4 1.9E+02 0.0042 26.6 8.9 43 180-222 31-82 (259)
389 PRK11613 folP dihydropteroate 41.8 3E+02 0.0064 25.7 15.4 75 112-190 30-114 (282)
390 PLN02540 methylenetetrahydrofo 41.8 4.2E+02 0.0091 27.5 13.1 103 177-291 19-126 (565)
391 cd02810 DHOD_DHPD_FMN Dihydroo 41.8 2.9E+02 0.0062 25.5 12.7 75 180-259 118-193 (289)
392 PF02679 ComA: (2R)-phospho-3- 41.7 1.2E+02 0.0027 27.6 7.3 109 115-232 49-167 (244)
393 PF03932 CutC: CutC family; I 41.6 93 0.002 27.4 6.4 65 124-193 131-199 (201)
394 cd00381 IMPDH IMPDH: The catal 41.5 3.2E+02 0.0069 26.0 11.4 98 122-226 95-198 (325)
395 PRK10834 vancomycin high tempe 41.3 1.7E+02 0.0037 26.6 8.2 56 119-175 67-125 (239)
396 cd06565 GH20_GcnA-like Glycosy 41.1 1E+02 0.0022 29.0 7.2 48 115-163 12-74 (301)
397 cd02930 DCR_FMN 2,4-dienoyl-Co 40.8 87 0.0019 30.2 6.8 25 117-141 221-245 (353)
398 PF01212 Beta_elim_lyase: Beta 40.8 1.1E+02 0.0024 28.7 7.2 77 115-196 104-195 (290)
399 PRK14988 GMP/IMP nucleotidase; 40.6 1.1E+02 0.0025 27.1 7.1 29 144-174 92-120 (224)
400 PF14871 GHL6: Hypothetical gl 40.4 1.8E+02 0.0039 23.6 7.6 69 123-197 3-87 (132)
401 PRK11572 copper homeostasis pr 40.3 2.9E+02 0.0064 25.2 12.2 112 118-248 71-188 (248)
402 TIGR03315 Se_ygfK putative sel 40.2 1.6E+02 0.0034 33.0 9.2 79 135-224 208-290 (1012)
403 PF12646 DUF3783: Domain of un 40.1 1.2E+02 0.0026 20.7 6.5 32 233-264 3-34 (58)
404 KOG0564 5,10-methylenetetrahyd 40.0 1.9E+02 0.0041 29.1 8.7 60 114-174 86-156 (590)
405 PRK07168 bifunctional uroporph 40.0 92 0.002 31.5 7.0 53 115-169 62-114 (474)
406 PRK09853 putative selenate red 40.0 1.6E+02 0.0034 32.9 9.1 78 135-224 210-292 (1019)
407 PRK11337 DNA-binding transcrip 39.9 2.5E+02 0.0055 26.0 9.7 90 117-226 125-215 (292)
408 COG1038 PycA Pyruvate carboxyl 39.7 5.3E+02 0.012 28.0 13.7 150 120-289 17-190 (1149)
409 PRK09389 (R)-citramalate synth 39.7 4.2E+02 0.0092 26.9 14.4 93 118-219 141-239 (488)
410 COG4868 Uncharacterized protei 39.6 3.4E+02 0.0074 25.8 11.1 69 189-261 67-139 (493)
411 PRK08284 precorrin 6A synthase 39.6 99 0.0022 28.3 6.6 49 120-169 90-140 (253)
412 cd02931 ER_like_FMN Enoate red 39.5 1.9E+02 0.0041 28.3 8.9 88 117-207 249-350 (382)
413 KOG0258 Alanine aminotransfera 39.4 3.2E+02 0.007 26.8 9.9 170 117-291 87-283 (475)
414 PF06968 BATS: Biotin and Thia 39.1 24 0.00052 26.7 2.1 69 113-187 15-91 (93)
415 COG1453 Predicted oxidoreducta 39.0 2.3E+02 0.0049 27.6 8.9 100 115-226 29-144 (391)
416 TIGR02803 ExbD_1 TonB system t 39.0 1.7E+02 0.0037 23.2 7.2 56 115-171 65-121 (122)
417 PRK15482 transcriptional regul 38.9 3.2E+02 0.0069 25.2 10.2 91 116-226 119-210 (285)
418 PRK12737 gatY tagatose-bisphos 38.9 3.3E+02 0.0072 25.4 15.9 162 116-290 25-201 (284)
419 COG0041 PurE Phosphoribosylcar 38.9 1.9E+02 0.0041 24.3 7.3 50 207-258 10-60 (162)
420 COG0826 Collagenase and relate 38.6 2.3E+02 0.0049 27.4 9.1 79 177-260 17-97 (347)
421 PLN02591 tryptophan synthase 38.6 2.7E+02 0.0058 25.5 9.2 73 180-257 23-108 (250)
422 cd00739 DHPS DHPS subgroup of 38.2 3.2E+02 0.0069 25.0 15.5 81 112-197 16-106 (257)
423 cd06562 GH20_HexA_HexB-like Be 37.8 1.1E+02 0.0023 29.6 6.8 51 112-163 10-84 (348)
424 PRK09456 ?-D-glucose-1-phospha 37.8 1.3E+02 0.0028 26.0 6.9 28 146-175 85-112 (199)
425 TIGR00696 wecB_tagA_cpsF bacte 37.7 2.6E+02 0.0057 24.0 9.7 79 118-201 33-115 (177)
426 cd04747 OYE_like_5_FMN Old yel 37.6 1.2E+02 0.0026 29.4 7.2 20 150-170 237-256 (361)
427 PRK09432 metF 5,10-methylenete 37.6 3.5E+02 0.0076 25.4 12.6 30 117-146 94-123 (296)
428 PF07505 Gp37_Gp68: Phage prot 37.2 2.3E+02 0.0051 26.1 8.6 20 87-106 10-32 (261)
429 PRK05990 precorrin-2 C(20)-met 37.1 1.1E+02 0.0023 27.8 6.4 47 120-169 85-131 (241)
430 TIGR02932 vnfK_nitrog V-contai 37.0 2.9E+02 0.0063 27.8 10.0 114 138-261 69-198 (457)
431 PF01729 QRPTase_C: Quinolinat 37.0 1.7E+02 0.0037 24.9 7.3 67 118-193 89-155 (169)
432 cd03466 Nitrogenase_NifN_2 Nit 36.9 3.4E+02 0.0073 27.0 10.5 111 139-260 65-186 (429)
433 COG0106 HisA Phosphoribosylfor 36.8 3.3E+02 0.0071 24.8 11.4 86 162-251 97-190 (241)
434 cd02911 arch_FMN Archeal FMN-b 36.6 1.3E+02 0.0027 27.2 6.7 68 120-193 152-220 (233)
435 COG1902 NemA NADH:flavin oxido 36.5 2.8E+02 0.0061 26.9 9.5 118 111-261 133-257 (363)
436 PF12646 DUF3783: Domain of un 36.5 1.1E+02 0.0023 20.9 4.8 39 212-252 12-51 (58)
437 PRK14477 bifunctional nitrogen 36.3 2.1E+02 0.0046 31.6 9.6 112 138-261 551-677 (917)
438 cd00477 FTHFS Formyltetrahydro 36.0 90 0.002 31.6 6.0 51 210-261 341-391 (524)
439 PRK08255 salicylyl-CoA 5-hydro 35.9 2.3E+02 0.005 30.6 9.7 82 113-194 537-659 (765)
440 cd06568 GH20_SpHex_like A subg 35.9 1.3E+02 0.0027 28.9 6.9 54 112-167 10-92 (329)
441 COG0854 PdxJ Pyridoxal phospha 35.9 3.2E+02 0.007 24.5 9.4 112 131-249 82-205 (243)
442 cd04735 OYE_like_4_FMN Old yel 35.7 73 0.0016 30.8 5.4 24 118-141 233-256 (353)
443 TIGR03278 methan_mark_10 putat 35.7 1.1E+02 0.0024 30.2 6.6 36 115-150 84-120 (404)
444 cd03329 MR_like_4 Mandelate ra 35.5 4.2E+02 0.009 25.6 13.5 138 118-259 143-296 (368)
445 cd05013 SIS_RpiR RpiR-like pro 35.3 2.2E+02 0.0048 22.3 9.1 86 121-226 2-88 (139)
446 cd01965 Nitrogenase_MoFe_beta_ 35.0 4.6E+02 0.0099 25.9 11.2 112 140-261 63-188 (428)
447 PRK08195 4-hyroxy-2-oxovalerat 35.0 4.1E+02 0.009 25.4 13.6 95 120-226 115-215 (337)
448 TIGR03128 RuMP_HxlA 3-hexulose 34.6 3.1E+02 0.0067 23.8 12.6 114 125-258 68-182 (206)
449 PRK08185 hypothetical protein; 34.5 2E+02 0.0043 26.9 7.7 71 118-195 150-230 (283)
450 TIGR01464 hemE uroporphyrinoge 34.5 4.1E+02 0.0089 25.2 13.7 58 130-192 190-260 (338)
451 PRK09875 putative hydrolase; P 34.2 4E+02 0.0086 25.0 13.8 78 115-193 94-185 (292)
452 PRK06740 histidinol-phosphatas 34.2 3.4E+02 0.0074 25.9 9.6 68 148-226 239-315 (331)
453 cd07938 DRE_TIM_HMGL 3-hydroxy 34.0 3.8E+02 0.0083 24.7 13.8 22 118-139 147-168 (274)
454 PRK10605 N-ethylmaleimide redu 33.9 3.4E+02 0.0074 26.3 9.7 80 114-193 146-269 (362)
455 PRK07945 hypothetical protein; 33.9 1.5E+02 0.0032 28.4 7.1 72 143-226 240-314 (335)
456 cd03315 MLE_like Muconate lact 33.8 3.7E+02 0.008 24.5 15.3 135 118-259 85-235 (265)
457 PTZ00349 dehydrodolichyl dipho 33.6 4.3E+02 0.0093 25.2 10.1 83 177-261 8-115 (322)
458 PRK11382 frlB fructoselysine-6 33.4 1.6E+02 0.0034 28.2 7.2 89 120-226 30-120 (340)
459 cd01971 Nitrogenase_VnfN_like 33.4 4.9E+02 0.011 25.8 11.0 111 140-260 68-191 (427)
460 COG2759 MIS1 Formyltetrahydrof 33.3 96 0.0021 30.9 5.5 55 210-265 354-408 (554)
461 PF01207 Dus: Dihydrouridine s 33.2 1.3E+02 0.0028 28.5 6.5 73 118-193 136-213 (309)
462 KOG4549 Magnesium-dependent ph 33.1 66 0.0014 26.0 3.7 33 141-175 40-72 (144)
463 PF14488 DUF4434: Domain of un 33.1 1.8E+02 0.004 24.6 6.8 26 115-140 15-40 (166)
464 cd04740 DHOD_1B_like Dihydroor 33.0 3.9E+02 0.0084 24.8 9.7 72 118-193 100-186 (296)
465 COG0269 SgbH 3-hexulose-6-phos 33.0 3.6E+02 0.0077 24.1 14.6 120 115-258 11-133 (217)
466 cd00465 URO-D_CIMS_like The UR 32.9 4E+02 0.0087 24.7 13.2 67 124-193 148-228 (306)
467 CHL00200 trpA tryptophan synth 32.7 4E+02 0.0087 24.5 11.8 82 180-266 36-130 (263)
468 PRK13111 trpA tryptophan synth 32.6 4E+02 0.0086 24.5 13.0 33 213-250 187-221 (258)
469 PRK09856 fructoselysine 3-epim 32.4 3.9E+02 0.0083 24.3 15.8 42 122-164 15-62 (275)
470 cd02905 Macro_GDAP2_like Macro 32.3 75 0.0016 26.2 4.2 52 88-139 58-113 (140)
471 TIGR01866 cas_Csn2 CRISPR-asso 32.2 2.7E+02 0.0058 24.9 7.9 54 211-264 147-200 (216)
472 PRK05588 histidinol-phosphatas 32.0 3.9E+02 0.0084 24.2 9.4 69 148-226 166-241 (255)
473 TIGR02129 hisA_euk phosphoribo 31.9 3E+02 0.0065 25.2 8.3 62 124-194 42-105 (253)
474 TIGR01457 HAD-SF-IIA-hyp2 HAD- 31.8 1.1E+02 0.0024 27.8 5.7 49 135-187 9-59 (249)
475 PF01261 AP_endonuc_2: Xylose 31.8 2E+02 0.0043 24.5 7.2 71 180-258 2-87 (213)
476 PTZ00175 diphthine synthase; P 31.8 1.5E+02 0.0032 27.5 6.5 51 121-175 66-116 (270)
477 PLN02645 phosphoglycolate phos 31.8 1.1E+02 0.0024 28.8 5.8 70 177-258 19-88 (311)
478 cd08205 RuBisCO_IV_RLP Ribulos 31.5 3.4E+02 0.0074 26.4 9.2 82 114-196 140-233 (367)
479 TIGR01858 tag_bisphos_ald clas 31.4 2E+02 0.0044 26.8 7.3 72 118-193 154-230 (282)
480 TIGR01285 nifN nitrogenase mol 31.3 4.4E+02 0.0096 26.2 10.2 113 138-260 71-199 (432)
481 TIGR02009 PGMB-YQAB-SF beta-ph 31.1 1.9E+02 0.0041 24.3 6.8 28 143-172 86-113 (185)
482 PRK13507 formate--tetrahydrofo 31.1 1.3E+02 0.0028 30.9 6.2 50 211-261 387-436 (587)
483 cd00019 AP2Ec AP endonuclease 31.0 3E+02 0.0065 25.2 8.6 81 115-197 80-178 (279)
484 cd02933 OYE_like_FMN Old yello 31.0 3.1E+02 0.0067 26.3 8.8 10 150-159 243-252 (338)
485 COG3142 CutC Uncharacterized p 31.0 4E+02 0.0087 24.0 11.4 115 118-251 71-192 (241)
486 PF08903 DUF1846: Domain of un 30.8 5.5E+02 0.012 25.6 12.0 72 189-264 66-141 (491)
487 PRK12344 putative alpha-isopro 30.8 6.1E+02 0.013 26.1 14.1 118 118-253 156-279 (524)
488 cd07947 DRE_TIM_Re_CS Clostrid 30.7 4.4E+02 0.0096 24.5 13.1 14 213-226 216-229 (279)
489 PRK08508 biotin synthase; Prov 30.7 4.4E+02 0.0095 24.4 10.0 97 146-259 40-154 (279)
490 PF00590 TP_methylase: Tetrapy 30.7 1.6E+02 0.0035 25.5 6.5 53 119-172 60-115 (210)
491 cd06533 Glyco_transf_WecG_TagA 30.6 3.3E+02 0.0073 23.0 9.6 79 118-201 31-114 (171)
492 cd03465 URO-D_like The URO-D _ 30.6 4.6E+02 0.0099 24.6 12.8 62 129-193 177-250 (330)
493 TIGR02434 CobF precorrin-6A sy 30.5 1.6E+02 0.0035 26.9 6.4 48 121-169 90-139 (249)
494 PF01268 FTHFS: Formate--tetra 30.3 77 0.0017 32.4 4.5 50 210-260 356-405 (557)
495 COG0710 AroD 3-dehydroquinate 30.2 4.2E+02 0.009 24.0 13.9 100 141-253 70-171 (231)
496 TIGR01501 MthylAspMutase methy 30.1 2.9E+02 0.0064 22.5 7.2 71 114-190 36-114 (134)
497 PRK07535 methyltetrahydrofolat 30.0 4.4E+02 0.0096 24.2 14.9 130 116-265 21-161 (261)
498 PRK10415 tRNA-dihydrouridine s 29.9 2.1E+02 0.0045 27.2 7.4 70 121-193 150-224 (321)
499 PRK06801 hypothetical protein; 29.9 4.7E+02 0.01 24.5 15.8 162 116-290 25-202 (286)
500 cd06569 GH20_Sm-chitobiase-lik 29.7 1.9E+02 0.004 29.0 7.2 28 113-140 15-42 (445)
No 1
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=100.00 E-value=2.8e-57 Score=436.15 Aligned_cols=372 Identities=78% Similarity=1.261 Sum_probs=316.7
Q ss_pred hhhhhhcccCCCCCcccccccccCccccccCCCCccccccccccccc-ccccccCCCCCccccccCCCCCchhhhhcCCC
Q 015808 5 VSKITDWHLGFRNSNFFLVDSQLGWLPSVLTSGTDDHLLHKSVANMN-YATSSANLSEDPLKDKDNHRVSDMLIDSFGRM 83 (400)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (400)
+|+|++..++++.+++.... ++. .-+ ++++-+..+.+++.. .|++.++.|.||+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~gr~ 56 (373)
T PLN02951 1 LSKLADLRLGFRSSSFQLQE--PGS-------------------SIFSASSSYAADQVDPEAS---NPVSDMLVDSFGRR 56 (373)
T ss_pred CchhhhhhhcccchhhhhhC--ccc-------------------ccccccccccccccccccC---CCCCcccccCCCCc
Confidence 57889988888876643321 110 001 112223334455555 89999999999999
Q ss_pred ccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCC
Q 015808 84 HTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL 163 (400)
Q Consensus 84 ~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~ 163 (400)
+.|+.|++|.+||++|.||+...+.........|+.+++.++++.+.+.|+..|.|+|||||+++++.++++++++..|+
T Consensus 57 ~~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~~gi 136 (373)
T PLN02951 57 HNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLKGL 136 (373)
T ss_pred ccEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhcCCC
Confidence 99999999999999999999875433333346699999999999999999999999999999999999999999886677
Q ss_pred ceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhH
Q 015808 164 KTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE 243 (400)
Q Consensus 164 ~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~e 243 (400)
..+.|+|||+++++.+..|.++|++.|+||+|+.+++.|+.+++.+++++++++|+.+.+.|+.++.+++|+++|.|+++
T Consensus 137 ~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~E 216 (373)
T PLN02951 137 KTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDE 216 (373)
T ss_pred ceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHH
Confidence 56899999999998899999999999999999999999999998888999999999999999756999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEeCCCCceEEEEcCCC
Q 015808 244 ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMT 323 (400)
Q Consensus 244 l~~l~~~~~~~gv~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (400)
+.++++++++.|+.+++++++|+++..|.....++++++++.+.+.++.+.........++.+|.++++.+.++++.+++
T Consensus 217 i~~li~~a~~~gi~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~~y~~~~~~g~ig~I~~~s 296 (373)
T PLN02951 217 ICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAKNFRIDGHCGSVSFITSMT 296 (373)
T ss_pred HHHHHHHHHhCCCeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcCcccccCCCCCCCceEEEECCCCeEEEEEcCCc
Confidence 99999999999999999999999988877777889999999999987645544433456788898999999999999999
Q ss_pred cCcCCCCCeEEEccCCeEEeccCCCCCCCchHHhhcCCCHHHHHHHHHHHHHhchhhhccccccccccccccccccC
Q 015808 324 EHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 400 (400)
Q Consensus 324 ~~~C~~~~~l~I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~~~~~~~~~~~~~~~~~~~~~ 400 (400)
..||++|+++.|++||+++||.|.+.+++|...++++..++.|.+.|..++.+|+..|..+.+-.....|.|..|||
T Consensus 297 ~~FC~~CnRlRltadG~l~~CL~~~~~~dl~~~l~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~m~~iGG 373 (373)
T PLN02951 297 EHFCAGCNRLRLLADGNLKVCLFGPSEVSLRDALRSGADDDELREIIGAAVKRKKAAHAGMFDLAKTANRPMIHIGG 373 (373)
T ss_pred ccccccCCeEEEccCCcEEecCCCCCCcChHHHHhcCCCHHHHHHHHHHHHHhccccccccccccCCCcccccccCC
Confidence 99999999999999999999999999999999999988999999999999999999997543211122589999999
No 2
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=100.00 E-value=7.6e-54 Score=408.37 Aligned_cols=324 Identities=39% Similarity=0.611 Sum_probs=283.6
Q ss_pred hhhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHH
Q 015808 75 MLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEAC 154 (400)
Q Consensus 75 ~~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i 154 (400)
.+.|.|||.+.|+.|++|++||++|.||+.... ........|+.+++.++++.+.+.|+..|.|+|||||+++++.+++
T Consensus 4 ~l~d~~gr~i~~l~i~iT~~CNl~C~yC~~~~~-~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li 82 (329)
T PRK13361 4 PLVDSFGRTVTYLRLSVTDRCDFRCVYCMSEDP-CFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLV 82 (329)
T ss_pred cCcCCCCCccCeEEEEecCCccccCCCCCCCCC-CcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHH
Confidence 388999999999999999999999999996532 2223456799999999999999999999999999999999999999
Q ss_pred HHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEE
Q 015808 155 FHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV 234 (400)
Q Consensus 155 ~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~ 234 (400)
+++++..++..+.|+|||+++++.+..|.++|++.|+||+|+.+++.|+++++.+.|++++++|+.+.+.|+.++.+++|
T Consensus 83 ~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v 162 (329)
T PRK13361 83 ARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAV 162 (329)
T ss_pred HHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 99988655546899999999998889999999999999999999999999999888999999999999999867999999
Q ss_pred EecCCChhHHHHHHHHHHhCCCeEEEEeeecCCCC-CCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEeCCCC
Q 015808 235 VMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGN-VWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHH 313 (400)
Q Consensus 235 v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~~-~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (400)
++++.|.+|+.++++++.++|+++.+++++|++.. .|.....++.+++.+.+.+.+.... .......++.+|.++++.
T Consensus 163 ~~~g~N~~ei~~~~~~~~~~gi~~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 241 (329)
T PRK13361 163 ILRGQNDDEVLDLVEFCRERGLDIAFIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTP-SNKRTGGPARYYTMADSP 241 (329)
T ss_pred EECCCCHHHHHHHHHHHHhcCCeEEEEecccCCCccchhhccCcCHHHHHHHHHHhCCccc-CCCCCCCCCeEEEECCCC
Confidence 99989999999999999999999999999999863 4555677889999999988765222 222334667788888889
Q ss_pred ceEEEEcCCCcCcCCCCCeEEEccCCeEEeccCCCCCCCchHHhhcCCCHH-HHHHHHHHHHHhchhhhccccccccccc
Q 015808 314 GNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDD-ELREIIGAAVKRKKAAHAGMFDIAKTAN 392 (400)
Q Consensus 314 ~~~~~~~~~~~~~C~~~~~l~I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~-~l~ei~~~a~~~k~~~~~~~~~~~~~~~ 392 (400)
+.++++.+++..||+.||++.|++||+++||.+.+.+++|...++++..++ .+.+.|..++.+|++.|+...+-....+
T Consensus 242 ~~ig~I~~~s~~fC~~Cnr~rlt~~G~l~~Cl~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 321 (329)
T PRK13361 242 IHIGFISPHSHNFCHECNRVRVTAEGQLLLCLGNEHASDLRSILREGPGDIERLKAAILAAINLKPKGHHFDDNGQVQIL 321 (329)
T ss_pred eEEEEEcCCCccccccCCeEEEccCCcEEecCCCCCCcchHHHHhcCCCcHHHHHHHHHHHHHcCccccCcccccCCCCc
Confidence 999999999999999999999999999999999999999999998887774 8999999999999999975322122236
Q ss_pred cccccccC
Q 015808 393 RPMIHIGG 400 (400)
Q Consensus 393 ~~~~~~~~ 400 (400)
|+|+.|||
T Consensus 322 ~~m~~iGG 329 (329)
T PRK13361 322 RFMNATGG 329 (329)
T ss_pred ccccccCC
Confidence 99999999
No 3
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=5.8e-53 Score=387.57 Aligned_cols=320 Identities=46% Similarity=0.782 Sum_probs=289.2
Q ss_pred hhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHH
Q 015808 76 LIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACF 155 (400)
Q Consensus 76 ~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~ 155 (400)
+.|.|||.+.++.+.+|.+||++|.||+........++...+|+|++.++++.+.+.|+.+|.|+||||||+++|.+|++
T Consensus 2 l~D~~gR~~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~ 81 (322)
T COG2896 2 LVDRFGRPVRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIA 81 (322)
T ss_pred cccccCCEeceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHH
Confidence 68999999999999999999999999998763444556678999999999999999999999999999999999999999
Q ss_pred HhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q 015808 156 HLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV 235 (400)
Q Consensus 156 ~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v 235 (400)
.+++. ++..++++|||+++.+....|+++|++.|+||||+.+++.|.++++.+.+++|++.|+.+.++|+.+|++++|+
T Consensus 82 ~l~~~-~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv 160 (322)
T COG2896 82 RLARL-GIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVL 160 (322)
T ss_pred HHhhc-ccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 99987 77789999999999999999999999999999999999999999998889999999999999999779999999
Q ss_pred ecCCChhHHHHHHHHHHhCCCeEEEEeeecCCC-CCCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEeCCCCc
Q 015808 236 MRGFNDDEICDFVELTRDRPINIRFIEFMPFDG-NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHG 314 (400)
Q Consensus 236 ~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~-~~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (400)
++|.|++|+.++++|+++.|+.++|+++||.+. +.|......+.+++.+.+.+.+. +............+|...+..
T Consensus 161 ~kgvNd~ei~~l~e~~~~~~~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~a~~~~~~~~~- 238 (322)
T COG2896 161 MKGVNDDEIEDLLEFAKERGAQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERAT-LLPVRKRLHGRAKYFIHPDGG- 238 (322)
T ss_pred ecCCCHHHHHHHHHHHhhcCCceEEEEEeecCcccchhhhccccHHHHHHHHHhhcc-ccccccccCCCceEEEeCCCc-
Confidence 999999999999999999999999999999984 55666678899999999998554 444444455566777666654
Q ss_pred eEEEEcCCCcCcCCCCCeEEEccCCeEEeccCCCCCCCchHHhhcCCCHHHHHHHHHHHHHhchhhhccccccccccccc
Q 015808 315 NVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRP 394 (400)
Q Consensus 315 ~~~~~~~~~~~~C~~~~~l~I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~~~~~~~~~~~~~~~ 394 (400)
.++++.+++..||+.|+++.+++||++++|.+.+...++.+.++++..++.+.+.|..++++|+.+|..--+... -++
T Consensus 239 ~ig~I~p~~~~FC~~CnR~Rlt~dGkl~~CL~~~~~~dlr~~lr~~~~~~~l~~~~~~a~~~r~~~~~~~~~~~~--~~~ 316 (322)
T COG2896 239 EIGFIAPVSNPFCATCNRLRLTADGKLKPCLFREDGIDLRDLLRSGASDEELVEAIREALRRRPPYHKLHRGNTG--RRE 316 (322)
T ss_pred EEEEEcCCCchhhhhcceeeeccCCeEEeccCCCcCcchhhhhcccccHHHHHHHHHHHHHhCCCCccccccccC--cee
Confidence 899999999999999999999999999999998889999999999888889999999999999999876655444 899
Q ss_pred cccccC
Q 015808 395 MIHIGG 400 (400)
Q Consensus 395 ~~~~~~ 400 (400)
|..|||
T Consensus 317 m~~~gg 322 (322)
T COG2896 317 MSYIGG 322 (322)
T ss_pred eeecCC
Confidence 999998
No 4
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=381.87 Aligned_cols=322 Identities=68% Similarity=1.079 Sum_probs=311.6
Q ss_pred hhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHH
Q 015808 76 LIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACF 155 (400)
Q Consensus 76 ~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~ 155 (400)
+.|.|++...|+.|++|..||++|.||+...+....+..+.++.+++.++.+.+...|+..+.++||||+.++|+.+++.
T Consensus 2 ~~d~f~r~htyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~di~~i~~ 81 (323)
T KOG2876|consen 2 LTDSFGREHTYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQDIVPIVA 81 (323)
T ss_pred ccchhhhhhhhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccccccchhh
Confidence 56889999999999999999999999999988877788899999999999999999999999999999999999999999
Q ss_pred HhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q 015808 156 HLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV 235 (400)
Q Consensus 156 ~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v 235 (400)
.+.+..|++.+.|+|||..+.+.+..+.++|++.++||+|...++.+..+.++.+|++|+..++.+.+.|++++.+++++
T Consensus 82 g~~~l~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~ 161 (323)
T KOG2876|consen 82 GLSSLPGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVV 161 (323)
T ss_pred hhhcccchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEE
Confidence 99998999999999999988899999999999999999999999999999999999999999999999999889999999
Q ss_pred ecCCChhHHHHHHHHHHhCCCeEEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEeCCCCce
Q 015808 236 MRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGN 315 (400)
Q Consensus 236 ~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (400)
+++.|.+++.+|+.+-+...++++|++|+|+.++.|+...+++|.+.++.+.+.++....+.+.+..+.+.|..+++.|.
T Consensus 162 ~k~~n~~ev~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~~~~~d~~~~l~~e~s~T~Ka~~i~g~~gq 241 (323)
T KOG2876|consen 162 MKGLNEDEVFDFVLLTRMRPLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLIVKPWDFSVRLPDEPSDTAKAYKIDGFQGQ 241 (323)
T ss_pred EeccCCCcccceeeecCCCCcceEEEEecccCCCcccccccccHHHHHHHHhccCchhhcCCCCCCccccccccccccce
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred EEEEcCCCcCcCCCCCeEEEccCCeEEeccCCCCCCCchHHhhcCCCHHHHHHHHHHHHHhchhhhcccccccccccccc
Q 015808 316 VSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPM 395 (400)
Q Consensus 316 ~~~~~~~~~~~C~~~~~l~I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~~~~~~~~~~~~~~~~ 395 (400)
++++.+++.++|++|+++.+.+||++..|.|++.++++++-++.|.+++.|.+|+..||.+||++|| ++++.+||||
T Consensus 242 vsfitsm~~hfC~tcnrlr~~aDgnlkvcl~G~Se~slRd~~r~~~s~e~l~~~i~~av~~kk~~ha---~~~~~~~~p~ 318 (323)
T KOG2876|consen 242 VSFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDRLRCGASDEQLSEIIGAAVGRKKAQHA---PLSPLANRPM 318 (323)
T ss_pred EEeehhhHHHHHhhhhhheEeccCcEEEeecCCccchhhhhhhcCCCHHHHHHHHHHHhhhhhhhcc---cccCCCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred ccccC
Q 015808 396 IHIGG 400 (400)
Q Consensus 396 ~~~~~ 400 (400)
|+|||
T Consensus 319 ~~~~~ 323 (323)
T KOG2876|consen 319 ILIGG 323 (323)
T ss_pred eccCC
Confidence 99998
No 5
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=100.00 E-value=3.1e-51 Score=392.38 Aligned_cols=325 Identities=46% Similarity=0.796 Sum_probs=280.1
Q ss_pred hhhhcCCCccEEEEEcCcccCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHH
Q 015808 76 LIDSFGRMHTYLRISLTERCNLRCHYCMPPE-GVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEAC 154 (400)
Q Consensus 76 ~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~-~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i 154 (400)
+.|.|||.+.|+.|.+|++||++|.||+... .....+....|+.+++.++++.+.+.|+..|.|+|||||+++++.+++
T Consensus 1 ~~d~~gr~~~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li 80 (334)
T TIGR02666 1 LIDRFGRRIDYLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELV 80 (334)
T ss_pred CcCCCCCccCeEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHH
Confidence 4689999999999999999999999999865 222223456799999999999999999999999999999999999999
Q ss_pred HHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhc-CCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 155 FHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTR-RKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 155 ~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~-~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
+.+++..++..+.|+|||+++++.+..|.++|++.|+||+||.+++.|+.+++ .++|++++++|+.+.+.|+.++.+++
T Consensus 81 ~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~ 160 (334)
T TIGR02666 81 ARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNT 160 (334)
T ss_pred HHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99987667756899999999998889999999999999999999999999985 45799999999999999993399999
Q ss_pred EEecCCChhHHHHHHHHHHhCCCeEEEEeeecCCCC-CCcccCCCCHHHHHHHHHHhCCCceeccC-CCCCCceeEE--e
Q 015808 234 VVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGN-VWNVKKLVPYAEMLDTVVKKFPGLRRMQD-HPTETAKNFK--I 309 (400)
Q Consensus 234 ~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~~-~~~~~~~~~~~e~~~~i~~~~~~l~~~~~-~~~~~~~~~~--~ 309 (400)
++++|.|++++.++++++.++|+.+++++++|+++. .|......+.+++++.+.+.+..+..... ....+...|. +
T Consensus 161 vv~~g~n~~ei~~l~~~~~~~gv~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
T TIGR02666 161 VVMRGVNDDEIVDLAEFAKERGVTLRFIELMPLGEGNGWREKKFVSADEILERLEQAFGPLEPVPSPRGNGPAPAYRWRL 240 (334)
T ss_pred EEeCCCCHHHHHHHHHHHHhcCCeEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcccceecCcCCCCCCceeeeeec
Confidence 999989999999999999999999999999998754 45556677889999999888754443321 2234556666 6
Q ss_pred CCCCceEEEEcCCCcCcCCCCCeEEEccCCeEEeccCCCCCCCchHHhhcCCCHHHHHHHHHHHHHhchhhhccccccc-
Q 015808 310 DGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIA- 388 (400)
Q Consensus 310 ~~~~~~~~~~~~~~~~~C~~~~~l~I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~~~~~~~~~- 388 (400)
+++.+.++++.+.+..+|++|+++.|++||+++||.+.+.+++|++.++.+..++.+.+.|..++.+|+..|..+-.-.
T Consensus 241 ~~~~~~ig~i~~~s~~fC~~cnr~r~t~dG~l~~Cl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 320 (334)
T TIGR02666 241 PGGKGRIGFISPVSDPFCGTCNRLRLTADGKLRLCLFADDGVDLRPLLRGGASDALLEAIIQAILQKKPEGHSFLRFTSP 320 (334)
T ss_pred CCCCeEEEEEccCCcccccccCEEEEccCCCEEEccCCCCCCchHHHHhcCCCHHHHHHHHHHHHHcCCcccCccccccc
Confidence 7777899999999999999999999999999999999999999999999888899999999999999999997431100
Q ss_pred --cccccccccccC
Q 015808 389 --KTANRPMIHIGG 400 (400)
Q Consensus 389 --~~~~~~~~~~~~ 400 (400)
....|.|..|||
T Consensus 321 ~~~~~~~~m~~igg 334 (334)
T TIGR02666 321 ANKRRKRAMSQIGG 334 (334)
T ss_pred ccCCCcccccccCC
Confidence 012489999999
No 6
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=100.00 E-value=1.1e-50 Score=388.18 Aligned_cols=326 Identities=45% Similarity=0.754 Sum_probs=285.3
Q ss_pred CCchhhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHH
Q 015808 72 VSDMLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIE 151 (400)
Q Consensus 72 ~~~~~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~ 151 (400)
....+.|.|||.+.++.|++|.+||++|.||+.............|+.+++.++++.+.+.|+..|.|+|||||+++++.
T Consensus 4 ~~~~~~d~~~r~~~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~ 83 (331)
T PRK00164 4 MTSQLIDRFGRKFTYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLE 83 (331)
T ss_pred CCCcCccCCCCccCeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHH
Confidence 34558999999999999999999999999999865322234567799999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEE
Q 015808 152 EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV 231 (400)
Q Consensus 152 ~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i 231 (400)
++++.+++..+...+.|+|||+++++.+..|.++|++.|+||+|+.+++.|+.+++...|++++++|+.+.+.|+.++.+
T Consensus 84 ~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i 163 (331)
T PRK00164 84 DIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKV 163 (331)
T ss_pred HHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEE
Confidence 99999987644447999999999988889999999999999999999999999999888999999999999999767999
Q ss_pred EEEEecCCChhHHHHHHHHHHhCCCeEEEEeeecCCCC-CCcccCCCCHHHHHHHHHHh-CCCceeccCCCCCCceeEEe
Q 015808 232 NCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGN-VWNVKKLVPYAEMLDTVVKK-FPGLRRMQDHPTETAKNFKI 309 (400)
Q Consensus 232 ~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~~-~~~~~~~~~~~e~~~~i~~~-~~~l~~~~~~~~~~~~~~~~ 309 (400)
++++++|.|.+++.+++++++++|+.+++++++|++.. .|......+.+++++.+.+. +. ..... ....+..+|.+
T Consensus 164 ~~vv~~g~n~~ei~~l~~~~~~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~~~~ 241 (331)
T PRK00164 164 NAVLMKGVNDDEIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWT-LQPRA-RSGGPAQYFRH 241 (331)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCc-ccccC-CCCCCCEEEEE
Confidence 99999989999999999999999999999999998754 56666778899999999887 32 22222 23467788888
Q ss_pred CCCCceEEEEcCCCcCcCCCCCeEEEccCCeEEeccCCCCCCCchHHhhcCCCHHHHHHHHHHHHHhchhhhcccccccc
Q 015808 310 DGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAK 389 (400)
Q Consensus 310 ~~~~~~~~~~~~~~~~~C~~~~~l~I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~~~~~~~~~~ 389 (400)
+++.+.++++.+.+..+|++|+++.|++||.++||.+.+.+.+|+..++++..+++|.+.|..++.+|+..|...-+ ..
T Consensus 242 ~~~~~~ig~i~~~s~~fC~~c~r~r~t~dG~l~~Cl~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~-~~ 320 (331)
T PRK00164 242 PDYGGEIGLIAPVTHDFCASCNRLRLTADGKLHLCLFAEDGVDLRDLLRSGADDEELAAAIREALQNKPEGHGLHDG-NT 320 (331)
T ss_pred CCCCeEEEEEeCCCCcccccCCeEEEcCCCcEEEcCCCCCCcCHHHHHhcCCCHHHHHHHHHHHHHcCccccCcccc-cC
Confidence 88889999999999999999999999999999999999999999999998889999999999999999999974321 23
Q ss_pred ccccccccccC
Q 015808 390 TANRPMIHIGG 400 (400)
Q Consensus 390 ~~~~~~~~~~~ 400 (400)
...|.|..|||
T Consensus 321 ~~~~~m~~igg 331 (331)
T PRK00164 321 GPTRHMSYIGG 331 (331)
T ss_pred CCcccccccCC
Confidence 34689999999
No 7
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=100.00 E-value=2.7e-46 Score=353.59 Aligned_cols=297 Identities=38% Similarity=0.602 Sum_probs=256.5
Q ss_pred hhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHH
Q 015808 76 LIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACF 155 (400)
Q Consensus 76 ~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~ 155 (400)
+.|.|||.+.++.|++|++||++|.||+..... ......|+.|++.++++.+...|+..|.|+|||||+++++.++++
T Consensus 1 ~~d~~gr~~~~l~i~vT~~CNl~C~yC~~~~~~--~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~ 78 (302)
T TIGR02668 1 LYDRFGRPVTSLRISVTDRCNLSCFYCHMEGED--RSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIR 78 (302)
T ss_pred CCCCCCCccCeEEEEEcccccCCCCCCCccccC--CCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHH
Confidence 468999999999999999999999999986422 122467999999999999999999999999999999999999999
Q ss_pred HhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q 015808 156 HLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV 235 (400)
Q Consensus 156 ~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v 235 (400)
++++. ++..+.|+|||+++++.+..|.+.|++.|+||+|+.+++.|+.+++.++|++++++|+.+.+.|+.++.+++++
T Consensus 79 ~l~~~-g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~ 157 (302)
T TIGR02668 79 RIKDY-GIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVV 157 (302)
T ss_pred HHHhC-CCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 99875 76579999999999888899999999999999999999999999998889999999999999999449999999
Q ss_pred ecCCChhHHHHHHHHHHhCCCeEEEEeeecCCCC-CCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEeCCCCc
Q 015808 236 MRGFNDDEICDFVELTRDRPINIRFIEFMPFDGN-VWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHG 314 (400)
Q Consensus 236 ~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~~-~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (400)
++|.|.+++.++++++.+.|+.+++++++|.+.. .+......+..++.+.+.+....+. .........|.+++. +
T Consensus 158 ~~g~n~~ei~~~~~~~~~~g~~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~~~~-~ 233 (302)
T TIGR02668 158 LKGINDNEIPDMVEFAAEGGAILQLIELMPPGEGEKEFKKYHEDIDPIEEELEKMADRVR---TRRMHNRPKYFIPGG-V 233 (302)
T ss_pred eCCCCHHHHHHHHHHHHhcCCEEEEEEEeECCCCccchhhceecHHHHHHHHHHhccccc---ccCCCCCcEEEeCCC-e
Confidence 9989999999999999999999999999998743 3444456678888888877653321 111112455566665 8
Q ss_pred eEEEEcCCCc-CcCCCCCeEEEccCCeEEeccCCC-CCCCchHHhhcCCCHHHHHHHHHHHHHhchhh
Q 015808 315 NVSFITSMTE-HFCAGCNRLRLLADGNFKVCLFGP-SEVSLRDPLRQNASDDELREIIGAAVKRKKAA 380 (400)
Q Consensus 315 ~~~~~~~~~~-~~C~~~~~l~I~~dG~v~pC~~~~-~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~ 380 (400)
.++++.+.+. .+|++|+++.|++||+++||.+.+ .+++|++.++++..++ +.+.+..++.+|+..
T Consensus 234 ~~g~i~~~~~~~fC~~c~r~r~t~dG~l~~Cl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~ 300 (302)
T TIGR02668 234 EVEVVKPMDNPVFCAHCTRLRLTSDGKLKTCLLRDDNLVDILDALRNGEDDE-LREAFREAVARREPY 300 (302)
T ss_pred EEEEECccCCCCccccCCeEEEcCCCCEEECCCCCCCCcchHHHHhcCCcHH-HHHHHHHHHHccccc
Confidence 9999999999 699999999999999999999987 4799999999887777 999999999999865
No 8
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=5.8e-38 Score=303.71 Aligned_cols=297 Identities=22% Similarity=0.305 Sum_probs=209.4
Q ss_pred CccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCC
Q 015808 83 MHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 162 (400)
Q Consensus 83 ~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g 162 (400)
.+..+.|++|++||++|.||+..... ......|+.+++.++++++.+.|+..|.|+|||||+++++.++++++++. +
T Consensus 5 ~P~~l~ieiT~~CNl~C~~C~~~~~~--~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~-g 81 (358)
T TIGR02109 5 PPLWLLAELTHRCPLQCPYCSNPLEL--ARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLARPDLVELVAHARRL-G 81 (358)
T ss_pred CCcEEEEeeccccCcCCCCCCCChhc--ccccCCCCHHHHHHHHHHHHhcCCcEEEEeCccccccccHHHHHHHHHHc-C
Confidence 35679999999999999999975422 13456799999999999999999999999999999999999999999885 8
Q ss_pred CceEEEEecCcchhh-hHHHHHHcCCCeEEEecCCCCHHHHHHhhcCC-CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC
Q 015808 163 LKTLAMTTNGLTLAR-KLPKLKESGLTSVNISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFN 240 (400)
Q Consensus 163 ~~~~~i~TNG~ll~~-~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n 240 (400)
+ .+.|+|||+++++ .++.|.+.|++.|+|||||.++++|++++|.. .|++++++|+.+++.|+ ++.+++++++ .|
T Consensus 82 ~-~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~-~v~v~~vv~~-~N 158 (358)
T TIGR02109 82 L-YTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGL-PLTLNFVIHR-HN 158 (358)
T ss_pred C-eEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCC-ceEEEEEecc-CC
Confidence 7 7899999999964 56888899999999999999999999999864 59999999999999999 9999999998 69
Q ss_pred hhHHHHHHHHHHhCCCeEEEEeeecCCC-CCCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEeCCCCceEEEE
Q 015808 241 DDEICDFVELTRDRPINIRFIEFMPFDG-NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFI 319 (400)
Q Consensus 241 ~~el~~l~~~~~~~gv~~~~~~~~p~~~-~~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (400)
.++++++++++.++|++...+...++.+ ...+.....+..+.++...+....+..... ......+..+.+.
T Consensus 159 ~~~l~~~~~~~~~lg~~~i~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------ 230 (358)
T TIGR02109 159 IDQIPEIIELAIELGADRVELATTQYYGWALLNRAALMPTRAQLEEATRIVEEARERLK--GGLVIDYVVPDYY------ 230 (358)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeccCchhcchhhcCCCHHHHHHHHHHHHHHHHHhc--CCCceEEeCCcch------
Confidence 9999999999999998643333333322 222211222222222222111110100000 0001111111110
Q ss_pred cCCCcCcC-CCC--CeEEEccCCeEEeccCCC--CCCCchHHhhcCCCHHHHHHHHHHH-HHhchhhhcccccccccccc
Q 015808 320 TSMTEHFC-AGC--NRLRLLADGNFKVCLFGP--SEVSLRDPLRQNASDDELREIIGAA-VKRKKAAHAGMFDIAKTANR 393 (400)
Q Consensus 320 ~~~~~~~C-~~~--~~l~I~~dG~v~pC~~~~--~~~~lg~i~~~~~~~~~l~ei~~~a-~~~k~~~~~~~~~~~~~~~~ 393 (400)
......| +++ ..++|+|||+||||.+.. .++.+||+. +++|.+||+++ ..++-+....+-+ .|..|.
T Consensus 231 -~~~~~~C~~~~g~~~~~I~~dG~V~pC~~~~~~~~~~~GNi~-----~~~l~eiw~~~~~~~~~r~~~~~~~-~C~~C~ 303 (358)
T TIGR02109 231 -AERPKACMGGWGRVFLNVTPAGKVLPCHAAEQIPGLSFPNVR-----EHSLSEIWYKSPAFNAYRGTDWMPE-PCRSCE 303 (358)
T ss_pred -hhchHHHhcccCceEEEECCCCCEecCCccccCCCccCCCcc-----CCCHHHHhcCCHHHHhhcCccccCC-CCCCcc
Confidence 0112247 333 358999999999998642 356777764 46699999864 3343333333333 688888
Q ss_pred ccccccC
Q 015808 394 PMIHIGG 400 (400)
Q Consensus 394 ~~~~~~~ 400 (400)
-.-.|||
T Consensus 304 ~~~~C~G 310 (358)
T TIGR02109 304 RKERDFG 310 (358)
T ss_pred cccccCC
Confidence 8888855
No 9
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=100.00 E-value=1.2e-37 Score=303.36 Aligned_cols=297 Identities=24% Similarity=0.306 Sum_probs=209.0
Q ss_pred CccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCC
Q 015808 83 MHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 162 (400)
Q Consensus 83 ~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g 162 (400)
.+..+.|++|++||++|.|||..... ......|+.+++.++++++.+.|+..|.|+|||||+++++.++++++++. +
T Consensus 14 ~P~~l~i~iT~~CNl~C~~C~~~~~~--~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~-g 90 (378)
T PRK05301 14 PPLWLLAELTYRCPLQCPYCSNPLDL--ARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLRKDLEELVAHAREL-G 90 (378)
T ss_pred CCeEEEEEecCccCcCCCCCCCcccc--ccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHc-C
Confidence 35679999999999999999976432 13356799999999999999999999999999999999999999999985 7
Q ss_pred CceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCC-CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC
Q 015808 163 LKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFN 240 (400)
Q Consensus 163 ~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n 240 (400)
+ .+.|+|||++++ +.++.|.+.|++.|+|||||.++++|+.++|.+ +|++++++|+.+++.|+ .+.+++|+++ .|
T Consensus 91 ~-~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~-~v~i~~vv~~-~N 167 (378)
T PRK05301 91 L-YTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGY-PLTLNAVIHR-HN 167 (378)
T ss_pred C-cEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCC-ceEEEEEeec-CC
Confidence 7 689999999997 456888899999999999999999999999875 69999999999999999 9999999988 69
Q ss_pred hhHHHHHHHHHHhCCCeEEEEe-eecCCCCCCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEeCCCCceEEEE
Q 015808 241 DDEICDFVELTRDRPINIRFIE-FMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFI 319 (400)
Q Consensus 241 ~~el~~l~~~~~~~gv~~~~~~-~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (400)
.+++.++++++.++|++...+. ..+.+....+.....+..+.++.+.+....+.... .......+..+.+..
T Consensus 168 ~~~i~~~~~~~~~lgv~~i~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----- 240 (378)
T PRK05301 168 IDQIPRIIELAVELGADRLELANTQYYGWALLNRAALMPTREQLERAERIVEEARERL--GGRLKIDFVVPDYYE----- 240 (378)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccccChhhhcccccCCCHHHHHHHHHHHHHHHHHh--cCCCceEEeCcchhh-----
Confidence 9999999999999998643333 33332222222222222222222222111110000 000111111111110
Q ss_pred cCCCcCcC-CC--CCeEEEccCCeEEeccCC--CCCCCchHHhhcCCCHHHHHHHHHHHH-Hhchhhhcccccccccccc
Q 015808 320 TSMTEHFC-AG--CNRLRLLADGNFKVCLFG--PSEVSLRDPLRQNASDDELREIIGAAV-KRKKAAHAGMFDIAKTANR 393 (400)
Q Consensus 320 ~~~~~~~C-~~--~~~l~I~~dG~v~pC~~~--~~~~~lg~i~~~~~~~~~l~ei~~~a~-~~k~~~~~~~~~~~~~~~~ 393 (400)
.....| ++ ...+.|++||+||||.+. ..++.+||+.+ ++|.+||+++. .++-+....+.+ .|..|.
T Consensus 241 --~~~~~C~~g~g~~~~~I~~dG~V~pC~~~~~~~~~~~GNi~~-----~sl~eIw~~s~~~~~~r~~~~~~~-~C~~C~ 312 (378)
T PRK05301 241 --ERPKACMGGWGRVFLNVTPDGTVLPCHAARTIPGLAFPNVRD-----HSLAEIWYDSEAFNRFRGTDWMPE-PCRSCD 312 (378)
T ss_pred --cccHhhhcccCceEEEECCCCCEEeCcchhhCCCCcCCCcCC-----CCHHHHhhcCHHHHHhhCcccccC-CCCCCc
Confidence 012246 33 345899999999999864 24677777744 56999998543 333222222223 577777
Q ss_pred ccccccC
Q 015808 394 PMIHIGG 400 (400)
Q Consensus 394 ~~~~~~~ 400 (400)
-.-.|||
T Consensus 313 ~~~~C~G 319 (378)
T PRK05301 313 EKEKDFG 319 (378)
T ss_pred cccccCC
Confidence 7777755
No 10
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=100.00 E-value=7.6e-34 Score=268.82 Aligned_cols=268 Identities=19% Similarity=0.236 Sum_probs=191.9
Q ss_pred CCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcC
Q 015808 82 RMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK 161 (400)
Q Consensus 82 ~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~ 161 (400)
+.+..+.|++|.+||++|.||+...... ......|+.+++.+.++ +.|+..|.|+||||||+|++.++++++++.
T Consensus 25 ~~Pl~l~le~T~~CNL~C~~C~~~~~~~-~~~~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~pdl~eiv~~~~~~- 99 (318)
T TIGR03470 25 RFPLVLMLEPLFRCNLACAGCGKIQYPA-EILKQRLSVEECLRAVD---ECGAPVVSIPGGEPLLHPEIDEIVRGLVAR- 99 (318)
T ss_pred CCCCEEEEecccccCcCCcCCCCCcCCC-cccccCCCHHHHHHHHH---HcCCCEEEEeCccccccccHHHHHHHHHHc-
Confidence 4567899999999999999999764321 11245699999877766 468889999999999999999999999875
Q ss_pred CCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcC-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC
Q 015808 162 GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFN 240 (400)
Q Consensus 162 g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n 240 (400)
+. .+.|+|||+++++.+..+.+.+...|+|||||. ++.|++++++ +.|++++++|+.+++.|+ ++.++++++.+.|
T Consensus 100 g~-~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~-~e~hd~~~~~~g~f~~~l~~I~~l~~~G~-~v~v~~tv~~~~n 176 (318)
T TIGR03470 100 KK-FVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGL-REHHDASVCREGVFDRAVEAIREAKARGF-RVTTNTTLFNDTD 176 (318)
T ss_pred CC-eEEEecCceehHHHHHHHHhCCCcEEEEEEecC-chhhchhhcCCCcHHHHHHHHHHHHHCCC-cEEEEEEEeCCCC
Confidence 76 799999999999888889988888999999996 5788888754 459999999999999999 9999999876689
Q ss_pred hhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEeCCCCceEEEE
Q 015808 241 DDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFI 319 (400)
Q Consensus 241 ~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (400)
.+++.++++++.++|++ +.+....+++.... ....++.++..+.+.+.+. +.............| +.++
T Consensus 177 ~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~-~~~~l~~~e~~~~~~~~~~-~~~~~~~~~~~s~~~--------l~~l 246 (318)
T TIGR03470 177 PEEVAEFFDYLTDLGVDGMTISPGYAYEKAPD-QDHFLGRRQTKKLFREVLS-NGNGKRWRFNHSPLF--------LDFL 246 (318)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCcccccccc-cccccCHHHHHHHHHHHHh-hccCCCCcccCCHHH--------HHHH
Confidence 99999999999999984 44444555543322 2334555555444444332 111000000000000 0111
Q ss_pred cCCCcCcCCCCCeEEEccCCeEEeccCCCCCCCchHHhhcCCCHHHHHHHHHHHHHhch
Q 015808 320 TSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKK 378 (400)
Q Consensus 320 ~~~~~~~C~~~~~l~I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~ 378 (400)
.......|.++..+.|++.|++.||...... ....++|++..-.|.+.
T Consensus 247 ~g~~~~~C~~~~~~~~~~~G~~~pC~~~~~~-----------~~~~~~~~~~~~~w~~~ 294 (318)
T TIGR03470 247 AGNQQYECTPWGNPTRNVFGWQKPCYLLNDG-----------YVPTFRELMEETDWDSY 294 (318)
T ss_pred cCCCCccccCCCCcccCccccccCceecCCc-----------chhhHHHHHhcCChhhc
Confidence 1113467877788899999999999864322 12345666666555544
No 11
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=100.00 E-value=1.3e-32 Score=267.70 Aligned_cols=300 Identities=17% Similarity=0.217 Sum_probs=191.3
Q ss_pred EEEEEcC-cccCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHhC--CCCEEEEECCCccchh-h-HHHHHHHhh
Q 015808 86 YLRISLT-ERCNLRCHYCMPPEGVDLT--PKPQLLSLNEILRLAYLFVTS--GVDKIRLTGGEPTVRK-D-IEEACFHLS 158 (400)
Q Consensus 86 ~l~i~iT-~~CNl~C~yC~~~~~~~~~--~~~~~~s~e~i~~ii~~~~~~--g~~~i~~~GGEPll~~-~-l~~~i~~~~ 158 (400)
.+.+.+| .+||++|.|||........ .....|+.+.+.++++.+.+. +...|.|+||||||+| + +.+++++++
T Consensus 5 ~~~~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~~~~~~~~~~~ 84 (370)
T PRK13758 5 SLLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLEFFEELMELQR 84 (370)
T ss_pred EEEEecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCChHHHHHHHHHHH
Confidence 3445565 8999999999987532211 123469999999999876553 3457999999999995 5 468898888
Q ss_pred hcC--CCc-eEEEEecCcchhhhH-HHHHHcCCCeEEEecCCCCHHHHHHhh----cCCCHHHHHHHHHHHHHcCCCcEE
Q 015808 159 KLK--GLK-TLAMTTNGLTLARKL-PKLKESGLTSVNISLDTLVPAKFEFLT----RRKGHEKVMESINAAIEVGYNPVK 230 (400)
Q Consensus 159 ~~~--g~~-~~~i~TNG~ll~~~~-~~l~~~g~~~i~iSldg~~~~~~~~ir----~~~~~~~v~~~i~~l~~~g~~~v~ 230 (400)
+.. ++. .+.|+|||+++++.+ +.|.+.++ .|+|||||+ ++.|+..| |.++|++++++|+.|.+.|+ .+.
T Consensus 85 ~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~-~~~ 161 (370)
T PRK13758 85 KHNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKYKV-EFN 161 (370)
T ss_pred HhccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHhCC-Cce
Confidence 752 221 368999999998655 66667665 999999997 67899888 45669999999999999999 999
Q ss_pred EEEEEecCCChhHHHHHHHHHHhCCCe-EEEEe-eecCCCCCCcccCCCCHHHHHHHHHHhCCCc-eeccCCCCCCceeE
Q 015808 231 VNCVVMRGFNDDEICDFVELTRDRPIN-IRFIE-FMPFDGNVWNVKKLVPYAEMLDTVVKKFPGL-RRMQDHPTETAKNF 307 (400)
Q Consensus 231 i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~-~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~l-~~~~~~~~~~~~~~ 307 (400)
+.+|+++ .|.+++.++++++.++|+. +.+.. +.|.+..........+.+++.+.+...+... ..... . ..+
T Consensus 162 i~~~v~~-~n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-g----~~~ 235 (370)
T PRK13758 162 ILCVVTS-NTARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDLWYEDFLN-G----NRV 235 (370)
T ss_pred EEEEecc-ccccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHHHHHHHHHHHHHHhhcC-C----CcE
Confidence 9999998 5999999999999999885 33332 3454322211112234443333322221100 00000 0 000
Q ss_pred EeCCCCceEEEEcCCCcCcCC--C-C-CeEEEccCCeEEeccCC-CCCCCchHHhhcCCCHHHHHHHHHHHHHhchh-hh
Q 015808 308 KIDGHHGNVSFITSMTEHFCA--G-C-NRLRLLADGNFKVCLFG-PSEVSLRDPLRQNASDDELREIIGAAVKRKKA-AH 381 (400)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~C~--~-~-~~l~I~~dG~v~pC~~~-~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~-~~ 381 (400)
.+..+......+.......|. + | ..++|++||+||||... ..++.+||+. ++++.+||++....+.. ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~I~~dG~V~pC~~~~~~~~~~GNI~-----~~~l~~i~~~~~~~~~~~~~ 310 (370)
T PRK13758 236 SIRYFDGLLETILLGKSSSCGMNGTCTCQFVVESDGSVYPCDFYVLDKWRLGNIQ-----DMTMKELFETNKNHEFIKSS 310 (370)
T ss_pred EeehHHHHHHHHhCCCCCCCccccccCccEEEecCCCEEeCCccccCCccccCcC-----CCCHHHHHhCHHHHHHHHhh
Confidence 110000000000000112352 2 3 25899999999999754 3567777764 45699999866543322 12
Q ss_pred ccccccccccccccccccC
Q 015808 382 AGMFDIAKTANRPMIHIGG 400 (400)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~ 400 (400)
....+ .|.+|.-.-+|||
T Consensus 311 ~~~~~-~C~~C~~~~~C~G 328 (370)
T PRK13758 311 FKVHE-ECKKCKWFPLCKG 328 (370)
T ss_pred ccccc-ccCCCCCcCccCC
Confidence 11223 5778877777754
No 12
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=100.00 E-value=3.4e-32 Score=267.06 Aligned_cols=299 Identities=18% Similarity=0.213 Sum_probs=191.9
Q ss_pred cEEEEEcC-cccCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHhC-CCCE--EEEECCCccchhh--HHHHHHH
Q 015808 85 TYLRISLT-ERCNLRCHYCMPPEGVDL--TPKPQLLSLNEILRLAYLFVTS-GVDK--IRLTGGEPTVRKD--IEEACFH 156 (400)
Q Consensus 85 ~~l~i~iT-~~CNl~C~yC~~~~~~~~--~~~~~~~s~e~i~~ii~~~~~~-g~~~--i~~~GGEPll~~~--l~~~i~~ 156 (400)
..+.+.+| ..||++|.|||....... ......|+.+++.++++++.+. +... |.|+||||||+++ +.++++.
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~ 92 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALEL 92 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHH
Confidence 46778877 699999999998543210 1123469999999999988764 4444 6678999999987 3455544
Q ss_pred hh---hcCCCceEEEEecCcchhhhH-HHHHHcCCCeEEEecCCCCHHHHHHhh----cCCCHHHHHHHHHHHHHcCCCc
Q 015808 157 LS---KLKGLKTLAMTTNGLTLARKL-PKLKESGLTSVNISLDTLVPAKFEFLT----RRKGHEKVMESINAAIEVGYNP 228 (400)
Q Consensus 157 ~~---~~~g~~~~~i~TNG~ll~~~~-~~l~~~g~~~i~iSldg~~~~~~~~ir----~~~~~~~v~~~i~~l~~~g~~~ 228 (400)
++ ...++ .+.|+|||+++++++ +.|.+.++ .|+|||||+ ++.|+..| |.++|++++++|+.|++.|+ .
T Consensus 93 ~~~~~~~~~i-~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi-~ 168 (412)
T PRK13745 93 QKKYARGRQI-DNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGINLLKKHGV-E 168 (412)
T ss_pred HHHHcCCCce-EEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHHHHHHHcCC-C
Confidence 43 22355 688999999998766 66777776 999999996 68899888 44669999999999999999 9
Q ss_pred EEEEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecC-----CCCCC---------c-ccCCCCHHHHHHHHHHhCCC
Q 015808 229 VKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPF-----DGNVW---------N-VKKLVPYAEMLDTVVKKFPG 292 (400)
Q Consensus 229 v~i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~-----~~~~~---------~-~~~~~~~~e~~~~i~~~~~~ 292 (400)
+.+.+|+++ .|.+++.++++++.++|++ +.++.++|. .+... . ....++.+++.+.+...+..
T Consensus 169 ~~i~~vv~~-~n~~~~~e~~~~~~~lg~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~fl~~lf~~ 247 (412)
T PRK13745 169 WNAMAVVND-FNADYPLDFYHFFKELDCHYIQFAPIVERIVSHQDGRHLASLAQQEGGELAPFSVTPEQWGNFLCTIFDE 247 (412)
T ss_pred EEEEEEEcC-CccccHHHHHHHHHHcCCCeEEEEeccCccccccccccccCcccccccccCCCccCHHHHHHHHHHHHHH
Confidence 999999998 6999999999999999985 445555552 11100 0 11123445444444332211
Q ss_pred ceeccCCCCCCceeEEeCCCCceEEEEcCCCcCcC---CCCCe-EEEccCCeEEeccCC-CCCCCchHHhhcCCCHHHHH
Q 015808 293 LRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFC---AGCNR-LRLLADGNFKVCLFG-PSEVSLRDPLRQNASDDELR 367 (400)
Q Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C---~~~~~-l~I~~dG~v~pC~~~-~~~~~lg~i~~~~~~~~~l~ 367 (400)
.... ... ..+ +..+...+..........| ..|+. .+|++||+||||.+. .+++.+|||.+ ++|.
T Consensus 248 w~~~--~~~---~~~-i~~f~~~~~~~~g~~~~~C~~~~~cg~~~~i~~nGdVypCd~~~~~e~~lGNI~~-----~sl~ 316 (412)
T PRK13745 248 WVKE--DVG---KYY-IQLFDSTLANWVGEQPGVCSMAKHCGHAGVMEFNGDVYSCDHFVFPEYKLGNIYQ-----QTLV 316 (412)
T ss_pred HHHc--cCC---CeE-EecHHHHHHHHhCCCCCcceecCCCCcceEEecCCcEEecccccccccccCCcCC-----CCHH
Confidence 0000 000 000 1000000000001112245 23443 479999999999764 45678887744 5699
Q ss_pred HHHHHHHHhchh-hhcccccccccccccccccc
Q 015808 368 EIIGAAVKRKKA-AHAGMFDIAKTANRPMIHIG 399 (400)
Q Consensus 368 ei~~~a~~~k~~-~~~~~~~~~~~~~~~~~~~~ 399 (400)
+||.+...+.-. .......=.|..|.-.-.|+
T Consensus 317 ~i~~s~~~~~f~~~~~~~~~~~C~~C~~~~~C~ 349 (412)
T PRK13745 317 EMMYSERQTAFGTMKYKSLPTQCKECEYLFACH 349 (412)
T ss_pred HHHhCHHHHHHHHhhhccCchhcCCCCcccccC
Confidence 999876543211 11112333588888777773
No 13
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=248.90 Aligned_cols=258 Identities=20% Similarity=0.273 Sum_probs=170.2
Q ss_pred EEEEcCcc-cCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCE--EEEECCCccch-hhHHHHHHHhh-hc
Q 015808 87 LRISLTER-CNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTS-GVDK--IRLTGGEPTVR-KDIEEACFHLS-KL 160 (400)
Q Consensus 87 l~i~iT~~-CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~-g~~~--i~~~GGEPll~-~~l~~~i~~~~-~~ 160 (400)
+.+.+|.. |||+|.|||....... ...|+.+.++++++.+.+. +... |+|+||||||. .+|.+.+..+. +.
T Consensus 9 ~~~kpt~~~CNL~C~YC~~~~~~~~---~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~f~~~~~~l~~k~ 85 (378)
T COG0641 9 VMAKPTGFECNLDCKYCFYLEKESL---QRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLDFYRKAVALQQKY 85 (378)
T ss_pred hhcCcccCccCCCCCeeCcccCCCC---CCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccchHHHHHHHHHHHHHH
Confidence 34556666 9999999999875432 1279999999999988764 3355 88899999999 44554444322 21
Q ss_pred C-CCc-eEEEEecCcchhhhH-HHHHHcCCCeEEEecCCCCHHHHHHhh----cCCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 161 K-GLK-TLAMTTNGLTLARKL-PKLKESGLTSVNISLDTLVPAKFEFLT----RRKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 161 ~-g~~-~~~i~TNG~ll~~~~-~~l~~~g~~~i~iSldg~~~~~~~~ir----~~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
. +.. ..+|+|||++|++++ +.|.+.++ .|.|||||+ ++.||+.| |.++|++|+++|+.|++.++ .+.+.+
T Consensus 86 ~~~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v-~~~~~~ 162 (378)
T COG0641 86 ANGKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGLELLQAHGV-DFNTLT 162 (378)
T ss_pred hcCCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCc-hHhccccccCCCCCccHHHHHHHHHHHHHcCC-cEEEEE
Confidence 1 221 567999999998877 66667777 999999996 89999999 88889999999999999999 899999
Q ss_pred EEecCCChhHHHHHHHHHHhCCCeEEEEeeecCCCCCCc----ccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEe
Q 015808 234 VVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWN----VKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKI 309 (400)
Q Consensus 234 ~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~----~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 309 (400)
||++ .|.+...++++++.+.| ...+.|.|.-+..-. .....+.+++.+.+...+....+.. ...+.+
T Consensus 163 vv~~-~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~------~~~i~i 233 (378)
T COG0641 163 VVNR-QNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWVRHD------VGRIFI 233 (378)
T ss_pred EEch-hHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHHHHhc------CCeeee
Confidence 9888 79999999999999988 344555554321111 1223344444333333322111110 001111
Q ss_pred CCCCceEE-EEcCCC-----cCcCCCCCeEEEccCCeEEeccC-CCCCCCchHHhhcCC
Q 015808 310 DGHHGNVS-FITSMT-----EHFCAGCNRLRLLADGNFKVCLF-GPSEVSLRDPLRQNA 361 (400)
Q Consensus 310 ~~~~~~~~-~~~~~~-----~~~C~~~~~l~I~~dG~v~pC~~-~~~~~~lg~i~~~~~ 361 (400)
..+...+. +..+.. ...| |.+.+ |++||+||||.+ +..++.+|++...++
T Consensus 234 ~~f~~~~~~~~~~~~~~c~~~~~c-g~~~~-v~~nGdiy~C~~~~~~~~~~Gnl~~~~~ 290 (378)
T COG0641 234 QNFDQLLKAWLGPPGSLCIFSETC-GDELV-VEPNGDIYSCDHFVYPEYKLGNIHETSL 290 (378)
T ss_pred hhHHHHHHHhhCCCCcceeeeccc-CcceE-EcCCCCeecCcccccccceeccccccch
Confidence 11000000 000000 1122 33345 999999999964 788999999987763
No 14
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.97 E-value=6.7e-29 Score=239.62 Aligned_cols=273 Identities=29% Similarity=0.408 Sum_probs=198.3
Q ss_pred cCCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCC-CCEEEEECCCccchhhHHHHHHHhh
Q 015808 80 FGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRKDIEEACFHLS 158 (400)
Q Consensus 80 ~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g-~~~i~~~GGEPll~~~l~~~i~~~~ 158 (400)
+...+..+.|++|.+||++|.||+...... ....++.++..++++++.+.| ...+.|+||||++++++.+++++++
T Consensus 14 ~~~~p~~~~~~~t~~Cnl~C~~C~~~~~~~---~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~d~~ei~~~~~ 90 (347)
T COG0535 14 FKKPPLVVGIELTNRCNLACKHCYAEAGKK---LPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPDLLEIVEYAR 90 (347)
T ss_pred cccCCcEEEEeeccccCCcCcccccccCCC---CccccCHHHHHHHHHHHHHcCCeeEEEEeCCCccccccHHHHHHHHh
Confidence 445677899999999999999999876421 357799999999999999999 8999999999999999999999999
Q ss_pred hcCCCceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCC-HHHHHHHHHHHHHcCCCcEEEEEEEe
Q 015808 159 KLKGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG-HEKVMESINAAIEVGYNPVKVNCVVM 236 (400)
Q Consensus 159 ~~~g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~-~~~v~~~i~~l~~~g~~~v~i~~~v~ 236 (400)
+..++ .+.+.|||++++ +.++.+.+.|++.|+||+||.+++.|+.++|..+ |++++++++.+.+.|+ .+.++++++
T Consensus 91 ~~~~~-~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~-~~~~~~~v~ 168 (347)
T COG0535 91 KKGGI-RVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGI-LVVINTTVT 168 (347)
T ss_pred hcCCe-EEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCC-eeeEEEEEe
Confidence 65566 899999997775 5568888999999999999999999999999655 9999999999999999 688998888
Q ss_pred cCCChhHHHHHHHHHHhCCC-eEEEEeeecCCCCCCcccCCCCHH--HHHHHHHHhCCC-ceeccCCCCCCceeEEeCCC
Q 015808 237 RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVWNVKKLVPYA--EMLDTVVKKFPG-LRRMQDHPTETAKNFKIDGH 312 (400)
Q Consensus 237 ~~~n~~el~~l~~~~~~~gv-~~~~~~~~p~~~~~~~~~~~~~~~--e~~~~i~~~~~~-l~~~~~~~~~~~~~~~~~~~ 312 (400)
+ .|.++++++++++.+.|+ .+.+..++|.+..........+.. +........... ..... ......+.....
T Consensus 169 ~-~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 244 (347)
T COG0535 169 K-INYDELPEIADLAAELGVDELNVFPLIPVGRGEENLELDLTPEEEELLLVLLLRSAKYLLRGL---PVEAPLFYGPLL 244 (347)
T ss_pred c-CcHHHHHHHHHHHHHcCCCEEEEEEEeecccccccccccCCHHHHHHHHHHHHHHHhhccccc---eeccccccchhc
Confidence 7 799999999999999997 466677888765544222222222 211111111111 00000 000000000000
Q ss_pred CceEEEEcCCCcCcC-CCCCeEEEccCCeEEeccCCCCCCCchHHhhcCCCHHHHHHHHHHH
Q 015808 313 HGNVSFITSMTEHFC-AGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAA 373 (400)
Q Consensus 313 ~~~~~~~~~~~~~~C-~~~~~l~I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~~l~ei~~~a 373 (400)
.. .........| ++...+.|++||+|+||.+.+. +| + .++.+.++|...
T Consensus 245 ~~---~~~~~~~~~~~~g~~~~~i~~~G~v~pc~~~~~---~G-v-----~~~~~~~iw~~~ 294 (347)
T COG0535 245 LD---FLFNGDPYECLAGRVSLAIDPDGEVYPCPFLPE---LG-V-----REESFKEIWEES 294 (347)
T ss_pred ch---hhccCccccccCCeEEEEECCCCCEecCccccc---Cc-c-----ccCCHHHHHHHH
Confidence 00 0001111223 5566789999999999998765 45 4 456789999988
No 15
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.94 E-value=5.9e-25 Score=215.68 Aligned_cols=190 Identities=23% Similarity=0.392 Sum_probs=151.6
Q ss_pred CCchhhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCC---C-CCCCCCCCHHHHHHHHHHHHhC--CCCEEEEEC-CCc
Q 015808 72 VSDMLIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVD---L-TPKPQLLSLNEILRLAYLFVTS--GVDKIRLTG-GEP 144 (400)
Q Consensus 72 ~~~~~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~---~-~~~~~~~s~e~i~~ii~~~~~~--g~~~i~~~G-GEP 144 (400)
++......|+| +.|.+|.+||++|.||+...... . ......|+++++.+.++.+.+. ++..|.|+| |||
T Consensus 15 ~~~~~~~~~~r----~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEP 90 (442)
T TIGR01290 15 YSVEAHHYFAR----MHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDP 90 (442)
T ss_pred CChhhccCcCE----EEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCc
Confidence 44344444444 56999999999999999753211 0 1124679999999999887653 567899999 999
Q ss_pred cchhh-HHHHHHHhhhc-CCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHh-----------hcCCC-
Q 015808 145 TVRKD-IEEACFHLSKL-KGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFL-----------TRRKG- 210 (400)
Q Consensus 145 ll~~~-l~~~i~~~~~~-~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~i-----------r~~~~- 210 (400)
|++++ +.+.++.+++. +++ .+.|+|||+++.+.+++|++.|++.|.|||++.+++.|+++ +|...
T Consensus 91 Ll~~e~~~~~l~~~~~~~~~i-~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~ 169 (442)
T TIGR01290 91 LANIGKTFQTLELVARQLPDV-KLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAA 169 (442)
T ss_pred ccCccccHHHHHHHHHhcCCC-eEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchH
Confidence 99987 46777777764 477 79999999988888999999999999999999999999876 22222
Q ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecCC
Q 015808 211 ---HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFD 267 (400)
Q Consensus 211 ---~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~ 267 (400)
|++++++|+.+.+.|+ .+.+++++++|.|++++.+++++++++|+. +.++.+.|..
T Consensus 170 ~il~e~~l~~l~~l~~~G~-~v~v~~vlIpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p 229 (442)
T TIGR01290 170 DLLIERQLEGLEKLTERGI-LVKVNSVLIPGINDEHLVEVSKQVKELGAFLHNVMPLISAP 229 (442)
T ss_pred HHHHHHHHHHHHHHHhCCC-eEEEEEEeeCCcCHHHHHHHHHHHHhCCCcEEEeecCCCcc
Confidence 7889999999999999 999999999999999999999999999874 4445555443
No 16
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.93 E-value=7.2e-25 Score=199.96 Aligned_cols=171 Identities=20% Similarity=0.402 Sum_probs=139.0
Q ss_pred EEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCC---CCEEEEECCCccchhhH-HHHHHHhhhcCCCc
Q 015808 89 ISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSG---VDKIRLTGGEPTVRKDI-EEACFHLSKLKGLK 164 (400)
Q Consensus 89 i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g---~~~i~~~GGEPll~~~l-~~~i~~~~~~~g~~ 164 (400)
+..|++||++|.||+....+.. .....++.+++.+.++.+.... ...|.|+|||||+++++ .++++++++. |+
T Consensus 19 ~v~~~gCnl~C~~C~~~~~~~~-~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~-g~- 95 (235)
T TIGR02493 19 VVFMQGCPLRCQYCHNPDTWDL-KGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKEL-GI- 95 (235)
T ss_pred EEEECCCCCcCCCCCChhhccC-CCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHC-CC-
Confidence 4678999999999997654321 2345689999988888765532 25799999999999995 5999999885 88
Q ss_pred eEEEEecCcch--hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC--C
Q 015808 165 TLAMTTNGLTL--ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGF--N 240 (400)
Q Consensus 165 ~~~i~TNG~ll--~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~--n 240 (400)
.+.++|||++. ++.+.++++. ++.|.||+|+.+++.|++++|. +|++++++++.+.+.|+ ++.++++++++. |
T Consensus 96 ~~~i~TNG~~~~~~~~~~~ll~~-~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~-~~~v~~vv~~~~~~n 172 (235)
T TIGR02493 96 HTCLDTSGFLGGCTEAADELLEY-TDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNK-PIWIRYVLVPGYTDS 172 (235)
T ss_pred CEEEEcCCCCCccHHHHHHHHHh-CCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCC-cEEEEEeeeCCcCCC
Confidence 68999999765 6777777774 7899999999999999999886 79999999999999999 899999998864 5
Q ss_pred hhHHHHHHHHHHhCCCeEEEEeeecC
Q 015808 241 DDEICDFVELTRDRPINIRFIEFMPF 266 (400)
Q Consensus 241 ~~el~~l~~~~~~~gv~~~~~~~~p~ 266 (400)
.++++++++++.+++. +..+.++|+
T Consensus 173 ~~ei~~l~~~~~~l~~-~~~~~~~p~ 197 (235)
T TIGR02493 173 EEDIEALAEFVKTLPN-VERVEVLPY 197 (235)
T ss_pred HHHHHHHHHHHHhCCC-CceEEecCC
Confidence 6899999999999884 233444444
No 17
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.92 E-value=8.9e-24 Score=189.42 Aligned_cols=207 Identities=26% Similarity=0.422 Sum_probs=171.1
Q ss_pred CCccEEEEEcCcccCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHhCC--CCEEEEEC-CCccchhhHHHHHHH
Q 015808 82 RMHTYLRISLTERCNLRCHYCMPPEGVDLTP--KPQLLSLNEILRLAYLFVTSG--VDKIRLTG-GEPTVRKDIEEACFH 156 (400)
Q Consensus 82 ~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~--~~~~~s~e~i~~ii~~~~~~g--~~~i~~~G-GEPll~~~l~~~i~~ 156 (400)
|..+.+++-.+..||++|.||....++.... ..-..++|.+...+++..+.. --...+-| |||+++|.+.++++.
T Consensus 104 RGtNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqa 183 (414)
T COG2100 104 RGTNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQA 183 (414)
T ss_pred cCceEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhHHHHHHH
Confidence 4566789999999999999999988764322 223356787777777766543 34677788 999999999999999
Q ss_pred hhhcCCCceEEEEecCcchhhhH-HHHHHcCCCeEEEecCCCCHHHHHHhhcCCC--HHHHHHHHHHHHHcCCCcEEEEE
Q 015808 157 LSKLKGLKTLAMTTNGLTLARKL-PKLKESGLTSVNISLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 157 ~~~~~g~~~~~i~TNG~ll~~~~-~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
+++.+++..++|+|||++|++++ +.|.++|++++++|+|+.||..-+.+.|... .+++++..+.+.+.|+ .+-|.-
T Consensus 184 lk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~i-dvlIaP 262 (414)
T COG2100 184 LKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGI-DVLIAP 262 (414)
T ss_pred HhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCC-CEEEee
Confidence 99999988899999999997654 9999999999999999999999999998766 6999999999999999 999999
Q ss_pred EEecCCChhHHHHHHHHHHhCCCe-----EEEEeeecCC-CCCCcccCCCCHHHHHHHHHHh
Q 015808 234 VVMRGFNDDEICDFVELTRDRPIN-----IRFIEFMPFD-GNVWNVKKLVPYAEMLDTVVKK 289 (400)
Q Consensus 234 ~v~~~~n~~el~~l~~~~~~~gv~-----~~~~~~~p~~-~~~~~~~~~~~~~e~~~~i~~~ 289 (400)
++.+|.|++|++.+++|+.+.|.+ +-+..|.|+. |.+-......+..++..++.+.
T Consensus 263 v~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrel 324 (414)
T COG2100 263 VWLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLREL 324 (414)
T ss_pred eecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHH
Confidence 999999999999999999998874 3456777764 2222345678888888887764
No 18
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.92 E-value=2.1e-23 Score=184.13 Aligned_cols=161 Identities=24% Similarity=0.450 Sum_probs=132.9
Q ss_pred EEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEE
Q 015808 88 RISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLA 167 (400)
Q Consensus 88 ~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~ 167 (400)
.+.+|++||++|.||+.+... .......++.+++.+.++.... .+..|.|+|||||+++++.++++++++. |+ .+.
T Consensus 19 ~~~~t~~Cnl~C~~C~~~~~~-~~~~~~~~~~~~i~~~i~~~~~-~~~~i~~sGGEPll~~~l~~li~~~~~~-g~-~v~ 94 (191)
T TIGR02495 19 FTIFFQGCNLKCPYCHNPELI-DREGSGEIEVEFLLEFLRSRQG-LIDGVVITGGEPTLQAGLPDFLRKVREL-GF-EVK 94 (191)
T ss_pred EEEEcCCCCCCCCCCCCcccc-CCCCCCcCCHHHHHHHHHHhcC-CCCeEEEECCcccCcHhHHHHHHHHHHC-CC-eEE
Confidence 356799999999999987432 1233456899999998886532 3678999999999999999999999985 88 799
Q ss_pred EEecCcchhhhHHHHHHcC-CCeEEEecCCCCHHHHHHhhcCC-CHH-HHHHHHHHHHHcCCCcEEEEEEEecCCCh-hH
Q 015808 168 MTTNGLTLARKLPKLKESG-LTSVNISLDTLVPAKFEFLTRRK-GHE-KVMESINAAIEVGYNPVKVNCVVMRGFND-DE 243 (400)
Q Consensus 168 i~TNG~ll~~~~~~l~~~g-~~~i~iSldg~~~~~~~~ir~~~-~~~-~v~~~i~~l~~~g~~~v~i~~~v~~~~n~-~e 243 (400)
+.|||+. .+.+..+++.| ++.|++|+++. ++.|+.++|.+ .++ +++++++.+.+.|+ .+.++++++++.+. ++
T Consensus 95 i~TNg~~-~~~l~~l~~~g~~~~v~isl~~~-~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi-~~~i~~~v~~~~~~~~e 171 (191)
T TIGR02495 95 LDTNGSN-PRVLEELLEEGLVDYVAMDVKAP-PEKYPELYGLEKNGSNNILKSLEILLRSGI-PFELRTTVHRGFLDEED 171 (191)
T ss_pred EEeCCCC-HHHHHHHHhcCCCcEEEEeccCC-hHHHHHHHCCCCchHHHHHHHHHHHHHcCC-CEEEEEEEeCCCCCHHH
Confidence 9999984 56678888887 58999999995 77788887654 465 99999999999999 89999999987655 47
Q ss_pred HHHHHHHHHhCC
Q 015808 244 ICDFVELTRDRP 255 (400)
Q Consensus 244 l~~l~~~~~~~g 255 (400)
++++++++.+.+
T Consensus 172 i~~~~~~l~~~~ 183 (191)
T TIGR02495 172 LAEIATRIKENG 183 (191)
T ss_pred HHHHHHHhccCC
Confidence 999999998876
No 19
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.92 E-value=2.6e-23 Score=196.30 Aligned_cols=202 Identities=20% Similarity=0.312 Sum_probs=156.6
Q ss_pred hcCC-CccEEEEEcCcc-cCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHh-----C-C--------------
Q 015808 79 SFGR-MHTYLRISLTER-CNLRCHYCMPPEGVDL---TPKPQLLSLNEILRLAYLFVT-----S-G-------------- 133 (400)
Q Consensus 79 ~~~~-~~~~l~i~iT~~-CNl~C~yC~~~~~~~~---~~~~~~~s~e~i~~ii~~~~~-----~-g-------------- 133 (400)
.||- .+..+++.+|.. ||++|.||+....... .......+++++.+.+..... + |
T Consensus 50 fygi~s~~c~q~~P~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~ 129 (322)
T PRK13762 50 FYGIESHRCVQMTPVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAME 129 (322)
T ss_pred cccccchheeccCchhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccC
Confidence 3443 567789999988 9999999998765432 123456778887766544311 1 2
Q ss_pred CCEEEEEC-CCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcC---C
Q 015808 134 VDKIRLTG-GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR---K 209 (400)
Q Consensus 134 ~~~i~~~G-GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~---~ 209 (400)
+..+.|+| |||||+|+|.++++++++. |+ .+.|.|||++ .+.++.| ..+++.+.|||||.++++|+++++. +
T Consensus 130 ~~~v~iSl~GEPlL~p~l~eli~~~k~~-Gi-~~~L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~ 205 (322)
T PRK13762 130 PKHVAISLSGEPTLYPYLPELIEEFHKR-GF-TTFLVTNGTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPD 205 (322)
T ss_pred CCEEEEeCCccccchhhHHHHHHHHHHc-CC-CEEEECCCCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCC
Confidence 45688985 9999999999999999985 88 7999999976 5667777 6678999999999999999999874 4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCC--cccCCCCHHHHHHH
Q 015808 210 GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVW--NVKKLVPYAEMLDT 285 (400)
Q Consensus 210 ~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~--~~~~~~~~~e~~~~ 285 (400)
.|++++++|+.+.+.|. ++.+++++.+|.|+++++++++++.+.+++ +.+..|++.+...+ ......+.+++.+.
T Consensus 206 ~~~~vl~~L~~l~~~~~-~~~ir~tlv~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~ 283 (322)
T PRK13762 206 AWERILETLELLPSKKT-RTVIRITLVKGYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREF 283 (322)
T ss_pred cHHHHHHHHHHHHhCCC-CEEEEEEEECCcCccHHHHHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHH
Confidence 59999999999999998 999999999999999999999999998774 55566777765543 22334455444433
No 20
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.92 E-value=7.4e-23 Score=195.39 Aligned_cols=184 Identities=23% Similarity=0.371 Sum_probs=149.7
Q ss_pred ccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH--------HhCCCCEEEEEC-CCccchhh-HHHH
Q 015808 84 HTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLF--------VTSGVDKIRLTG-GEPTVRKD-IEEA 153 (400)
Q Consensus 84 ~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~--------~~~g~~~i~~~G-GEPll~~~-l~~~ 153 (400)
...+.+..+.+||++|.||..... ...+.++.+++...+..+ ...++..|.|+| ||||++++ +.++
T Consensus 120 ~~t~ciSsq~GCnl~C~FC~tg~~----g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln~d~v~~~ 195 (368)
T PRK14456 120 RMTACISSQAGCALRCSFCATGQM----GFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLNTDNVFEA 195 (368)
T ss_pred ceEEEEEecCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccCHHHHHHH
Confidence 456788899999999999987642 234468888877765322 235688999999 99999986 9999
Q ss_pred HHHhhhc-CC----CceEEEEecCcchhhhHHHHHHcCCC-eEEEecCCCCHHHHHHhhc----CCCHHHHHHHHHH-HH
Q 015808 154 CFHLSKL-KG----LKTLAMTTNGLTLARKLPKLKESGLT-SVNISLDTLVPAKFEFLTR----RKGHEKVMESINA-AI 222 (400)
Q Consensus 154 i~~~~~~-~g----~~~~~i~TNG~ll~~~~~~l~~~g~~-~i~iSldg~~~~~~~~ir~----~~~~~~v~~~i~~-l~ 222 (400)
++.+++. .+ ...+.++||| +.+.+.+|.+.|++ .+.||||+++++.++++.+ .-.+++++++++. +.
T Consensus 196 i~~l~~~~~~~~is~r~ItisT~G--l~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~ 273 (368)
T PRK14456 196 VLTLSTRKYRFSISQRKITISTVG--ITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYAS 273 (368)
T ss_pred HHHHhccccccCcCcCeeEEECCC--ChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHH
Confidence 9999874 11 2378899999 45678999999986 8999999999999999963 3359999999985 55
Q ss_pred HcCCCcEEEEEEEecCCChh--HHHHHHHHHHhCCCeEEEEeeecCCCCCCccc
Q 015808 223 EVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPINIRFIEFMPFDGNVWNVK 274 (400)
Q Consensus 223 ~~g~~~v~i~~~v~~~~n~~--el~~l~~~~~~~gv~~~~~~~~p~~~~~~~~~ 274 (400)
+.|. .+.+++++++|.|++ ++.+++++++++.+.+++++|+|+++.+|...
T Consensus 274 ~~g~-~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~p 326 (368)
T PRK14456 274 KTGE-PVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPV 326 (368)
T ss_pred hcCC-eEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCC
Confidence 6676 899999999999885 69999999999888999999999988777643
No 21
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.91 E-value=4.3e-23 Score=189.47 Aligned_cols=180 Identities=19% Similarity=0.335 Sum_probs=140.7
Q ss_pred hhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC---CCCEEEEECCCccchhhH-H
Q 015808 76 LIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTS---GVDKIRLTGGEPTVRKDI-E 151 (400)
Q Consensus 76 ~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~---g~~~i~~~GGEPll~~~l-~ 151 (400)
..|..|. +. +..+.+||++|.||+.+..... .....++.+++.+.+...... ....|+|+|||||+++++ .
T Consensus 15 ~~dg~g~--~~--~~f~~gCnl~C~~C~~~~~~~~-~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~~~ 89 (246)
T PRK11145 15 TVDGPGI--RF--ITFFQGCLMRCLYCHNRDTWDT-HGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVR 89 (246)
T ss_pred eECCCCe--EE--EEEECCCCCcCCCCCCHHHCCC-CCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcCHHHHH
Confidence 4555552 22 3457999999999997653322 234568999988877655432 235799999999999996 5
Q ss_pred HHHHHhhhcCCCceEEEEecCcch--hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcE
Q 015808 152 EACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPV 229 (400)
Q Consensus 152 ~~i~~~~~~~g~~~~~i~TNG~ll--~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v 229 (400)
++++.+++. |+ .+.+.|||+++ ++.++.+++. ++.|.||+|+.+++.|+.++|. ..+.++++++.+.+.|+ ++
T Consensus 90 ~l~~~~k~~-g~-~i~l~TNG~~~~~~~~~~~ll~~-~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~-~v 164 (246)
T PRK11145 90 DWFRACKKE-GI-HTCLDTNGFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQ-KT 164 (246)
T ss_pred HHHHHHHHc-CC-CEEEECCCCCCcchHHHHHHHHh-CCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCC-cE
Confidence 999999984 88 79999999975 4667777764 7899999999999999999885 46889999999999999 99
Q ss_pred EEEEEEecCCChh--HHHHHHHHHHhCCCeEEEEeeecC
Q 015808 230 KVNCVVMRGFNDD--EICDFVELTRDRPINIRFIEFMPF 266 (400)
Q Consensus 230 ~i~~~v~~~~n~~--el~~l~~~~~~~gv~~~~~~~~p~ 266 (400)
.+++++++|.|++ ++.++++++++++ .+..+.++|+
T Consensus 165 ~i~~~li~g~nd~~~ei~~l~~~l~~l~-~~~~~~l~~~ 202 (246)
T PRK11145 165 WIRYVVVPGWTDDDDSAHRLGEFIKDMG-NIEKIELLPY 202 (246)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcC-CcceEEEecC
Confidence 9999999998874 7999999998865 2334444444
No 22
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.88 E-value=1.1e-21 Score=168.32 Aligned_cols=161 Identities=33% Similarity=0.525 Sum_probs=137.1
Q ss_pred EEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HhCCCCEEEEECCCccchhhHHHHHHHhhhc--CCCce
Q 015808 89 ISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLF-VTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLKT 165 (400)
Q Consensus 89 i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~-~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~--~g~~~ 165 (400)
|++|++||++|.||+.... ........++.+++.+.++.+ ...|...|.++||||++++++.+++..+.+. .++ .
T Consensus 1 i~~~~~C~~~C~fC~~~~~-~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~-~ 78 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRS-RRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPDFIELLELLRKIKKRGI-R 78 (166)
T ss_dssp EEEESEESS--TTTSTTTT-CCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCHHHHHHHHHHHCTCTTE-E
T ss_pred CEECcCcCccCCCCCCCcc-CCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchhHHHHHHHHHHhhcccc-c
Confidence 5789999999999998763 123456779999999999999 5778888999999999999998888888775 355 8
Q ss_pred EEEEecCcch-hhhHHHHHHcCCCeEEEecCCCCHH-HHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhH
Q 015808 166 LAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPA-KFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE 243 (400)
Q Consensus 166 ~~i~TNG~ll-~~~~~~l~~~g~~~i~iSldg~~~~-~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~e 243 (400)
+.+.|||+.+ .+.++.+.+.+++.|.+|+++.+++ .++.+++...+++++++++.+.++|++.+...+++.++.|.++
T Consensus 79 i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e 158 (166)
T PF04055_consen 79 ISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEE 158 (166)
T ss_dssp EEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHH
T ss_pred eeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHH
Confidence 9999999999 6778999999999999999999998 7777766566999999999999999933888888899999999
Q ss_pred HHHHHHHH
Q 015808 244 ICDFVELT 251 (400)
Q Consensus 244 l~~l~~~~ 251 (400)
++++++++
T Consensus 159 ~~~~~~~i 166 (166)
T PF04055_consen 159 IEETIRFI 166 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHhCcC
Confidence 99999874
No 23
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.88 E-value=8.5e-21 Score=180.42 Aligned_cols=179 Identities=19% Similarity=0.330 Sum_probs=140.8
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC------CCCEEEEEC-CCccchhh-HHHHHHH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTS------GVDKIRLTG-GEPTVRKD-IEEACFH 156 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~------g~~~i~~~G-GEPll~~~-l~~~i~~ 156 (400)
..+.|..+.+||++|.||..+.. ...+.++.+++...+...... .+..|.|+| ||||++++ +.+.++.
T Consensus 93 ~t~cvSsq~GC~l~C~fC~tg~~----g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~ 168 (343)
T PRK14468 93 KTICVSTMVGCPAGCAFCATGAM----GFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARI 168 (343)
T ss_pred CEEEEEecCCCCCcCCCCCCCCC----CCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHH
Confidence 56889999999999999986532 345779999988876554332 256899999 99999976 6788887
Q ss_pred hhhcCCC----ceEEEEecCcchhhhHHHHHHcCCC-eEEEecCCCCHHHHHHhhcCC---CHHHHHHHHHHHHHcCCCc
Q 015808 157 LSKLKGL----KTLAMTTNGLTLARKLPKLKESGLT-SVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIEVGYNP 228 (400)
Q Consensus 157 ~~~~~g~----~~~~i~TNG~ll~~~~~~l~~~g~~-~i~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~~g~~~ 228 (400)
+.+..++ ..+.++|||. .+.+++|.+.++. .+.|||++++++.++++++.+ .+++++++++.+.+..-.+
T Consensus 169 l~~~~g~~l~~r~itvST~G~--~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~ 246 (343)
T PRK14468 169 MLHPQALAMSPRRVTLSTVGI--PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRR 246 (343)
T ss_pred hcccccccccCceEEEECCCC--hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCe
Confidence 7543343 2689999993 4677888887765 699999999999999998433 5899999998666553338
Q ss_pred EEEEEEEecCCChh--HHHHHHHHHHhCCCeEEEEeeecCCCC
Q 015808 229 VKVNCVVMRGFNDD--EICDFVELTRDRPINIRFIEFMPFDGN 269 (400)
Q Consensus 229 v~i~~~v~~~~n~~--el~~l~~~~~~~gv~~~~~~~~p~~~~ 269 (400)
+.+++++++|.|++ ++.++++++++..+.+++++|.|+.+.
T Consensus 247 V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~~~~ 289 (343)
T PRK14468 247 VTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWEGS 289 (343)
T ss_pred EEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCCCCC
Confidence 99999999998884 689999999998878888888876543
No 24
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.88 E-value=4.4e-21 Score=181.77 Aligned_cols=199 Identities=18% Similarity=0.285 Sum_probs=151.8
Q ss_pred ccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEECCCccch--hhHHHHHHHhhhc
Q 015808 84 HTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTS-GVDKIRLTGGEPTVR--KDIEEACFHLSKL 160 (400)
Q Consensus 84 ~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~-g~~~i~~~GGEPll~--~~l~~~i~~~~~~ 160 (400)
+..+.|.+|++||++|+||+....... .....++.+++.++++.+.+. ++..|.|+|||||+. +++.++++.+++.
T Consensus 87 p~rvll~vT~~C~~~Cr~C~r~~~~~~-~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i 165 (321)
T TIGR03822 87 PDRVLLKPVHVCPVYCRFCFRREMVGP-EGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAI 165 (321)
T ss_pred CCEEEEEecCCCCCcCcCCCchhhcCC-cccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhC
Confidence 466789999999999999998753211 223567899999999998854 799999999999985 5699999999986
Q ss_pred CCCceEEEEe-----cCcchhh-hHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEE
Q 015808 161 KGLKTLAMTT-----NGLTLAR-KLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV 234 (400)
Q Consensus 161 ~g~~~~~i~T-----NG~ll~~-~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~ 234 (400)
..+..+.+.| |+..+++ .++.|.+.|. .+.||+|+..+.. + ++.++++++.++++|+ .+.++++
T Consensus 166 ~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~e---l-----~~~~~~ai~~L~~~Gi-~v~~q~v 235 (321)
T TIGR03822 166 DHVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHARE---L-----TAEARAACARLIDAGI-PMVSQSV 235 (321)
T ss_pred CCccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhh---c-----CHHHHHHHHHHHHcCC-EEEEEee
Confidence 5554567777 6666654 4577888885 5889999964321 1 5899999999999999 9999999
Q ss_pred EecCCCh--hHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCCCc
Q 015808 235 VMRGFND--DEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGL 293 (400)
Q Consensus 235 v~~~~n~--~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~l 293 (400)
+.+|.|+ +++.++++++.+.|+. +.+..+.|.+|.....-......++++.+....+++
T Consensus 236 Ll~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g~ 297 (321)
T TIGR03822 236 LLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISGL 297 (321)
T ss_pred EeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCCC
Confidence 9987766 4799999999999995 556677888775544333333456666666655543
No 25
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.88 E-value=9e-21 Score=181.25 Aligned_cols=177 Identities=20% Similarity=0.374 Sum_probs=140.7
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---hCCCCEEEEEC-CCccchhh-HHHHHHHhhh
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFV---TSGVDKIRLTG-GEPTVRKD-IEEACFHLSK 159 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~---~~g~~~i~~~G-GEPll~~~-l~~~i~~~~~ 159 (400)
..+.|..+.+||++|.||..+.. ...+.++.+++...+..+. ..++..|.|+| ||||++++ +.++++++.+
T Consensus 101 ~t~cissq~GC~l~C~fC~tg~~----g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln~d~v~~~i~~l~~ 176 (343)
T PRK14469 101 ITACISTQVGCPVKCIFCATGQS----GFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLNYENVIKSIKILNH 176 (343)
T ss_pred eEEEEEecCCCCCcCcCCCCCCC----CccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhhHHHHHHHHHHHhc
Confidence 45788889999999999987542 2234588888766554332 23578999999 99999986 7899999864
Q ss_pred c----CCCceEEEEecCcchhhhHHHHHHcCCC-eEEEecCCCCHHHHHHhhc---CCCHHHHHHHHHHHHHc-CCCcEE
Q 015808 160 L----KGLKTLAMTTNGLTLARKLPKLKESGLT-SVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAIEV-GYNPVK 230 (400)
Q Consensus 160 ~----~g~~~~~i~TNG~ll~~~~~~l~~~g~~-~i~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~~~-g~~~v~ 230 (400)
. .+...+.++|||. .+.+..|.+.+++ .+.||||+++++.++.+++ +.+++.++++++.+.+. +. ++.
T Consensus 177 ~~~~~~g~~~itisTnG~--~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~-~v~ 253 (343)
T PRK14469 177 KKMKNIGIRRITISTVGI--PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGN-RVT 253 (343)
T ss_pred hhcccCCCCeEEEECCCC--hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCC-eEE
Confidence 2 2334799999995 6778999988887 7999999999999998864 34599999999987765 55 899
Q ss_pred EEEEEecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCC
Q 015808 231 VNCVVMRGFND--DEICDFVELTRDRPINIRFIEFMPFDG 268 (400)
Q Consensus 231 i~~~v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~ 268 (400)
+++++++|.|+ +++.+++++++..++.+..+.|.|..+
T Consensus 254 i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~ 293 (343)
T PRK14469 254 IEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVP 293 (343)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCc
Confidence 99999999887 489999999998887777777777543
No 26
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.88 E-value=4.3e-21 Score=171.66 Aligned_cols=184 Identities=21% Similarity=0.344 Sum_probs=151.6
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCC-----CCEEEEECCCccchh--hHHHHHHHhh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSG-----VDKIRLTGGEPTVRK--DIEEACFHLS 158 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g-----~~~i~~~GGEPll~~--~l~~~i~~~~ 158 (400)
++.+.+|++||++|.||+..... .. ...++.+++.+.++.+.+.+ +..+.|+||||++++ .+.++++.++
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~--~~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~ 78 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSAR--GK-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIR 78 (216)
T ss_pred ccEEEecCchhccCCcCCcCccc--cc-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 46789999999999999987643 12 56677888888888875443 477899999999987 5889999998
Q ss_pred hcCC---CceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcC-CCcEEEEE
Q 015808 159 KLKG---LKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG-YNPVKVNC 233 (400)
Q Consensus 159 ~~~g---~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g-~~~v~i~~ 233 (400)
+... ...+.+.|||.+++ +.++.|.+.|++.+.+|+++.+++.++.+++..++++++++++.+.++| + .+.+.+
T Consensus 79 ~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~-~v~~~~ 157 (216)
T smart00729 79 EILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPI-KVSTDL 157 (216)
T ss_pred HhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCc-ceEEeE
Confidence 7643 22688999988775 5679999999999999999999999999888888999999999999999 6 666666
Q ss_pred EEe-cCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc
Q 015808 234 VVM-RGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV 273 (400)
Q Consensus 234 ~v~-~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~ 273 (400)
++. ++.|.+++.++++++.+.++. +.+..+.|..++++..
T Consensus 158 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~ 199 (216)
T smart00729 158 IVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAK 199 (216)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHH
Confidence 553 346889999999999999996 8888999988776543
No 27
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.87 E-value=1.6e-20 Score=179.42 Aligned_cols=180 Identities=21% Similarity=0.356 Sum_probs=141.3
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----h--CCCCEEEEEC-CCccchhh-HHHHHHHh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFV----T--SGVDKIRLTG-GEPTVRKD-IEEACFHL 157 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~----~--~g~~~i~~~G-GEPll~~~-l~~~i~~~ 157 (400)
.+.|....+||++|.||+.... ...+.++.+++...+..+. . .++..|.|.| ||||++++ +.++++.+
T Consensus 106 t~cVSsQ~GC~l~C~fC~t~~~----g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPLln~d~v~~~l~~l 181 (355)
T TIGR00048 106 TVCVSSQVGCALGCTFCATAKG----GFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPLLNLNEVVKAMEIM 181 (355)
T ss_pred EEEEecCCCCCCcCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchhhCHHHHHHHHHHh
Confidence 4666666789999999997542 2345688888777554332 1 2467899999 99999976 78899988
Q ss_pred hhcCC--C--ceEEEEecCcchhhhHHHHHHcCCC-eEEEecCCCCHHHHHHhhcCC---CHHHHHHHHHHH-HHcCCCc
Q 015808 158 SKLKG--L--KTLAMTTNGLTLARKLPKLKESGLT-SVNISLDTLVPAKFEFLTRRK---GHEKVMESINAA-IEVGYNP 228 (400)
Q Consensus 158 ~~~~g--~--~~~~i~TNG~ll~~~~~~l~~~g~~-~i~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l-~~~g~~~ 228 (400)
.+..| + .++.|+|||.. +.+.+|.+.+++ .+.|||++++++.|+++.+.. .++.++++++.+ .+.|. +
T Consensus 182 ~~~~g~~i~~~~itisT~G~~--~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~-~ 258 (355)
T TIGR00048 182 NDDFGLGISKRRITISTSGVV--PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGR-R 258 (355)
T ss_pred hcccccCcCCCeEEEECCCch--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCC-E
Confidence 75333 3 37999999965 667888886665 689999999999999997643 489999999865 45677 9
Q ss_pred EEEEEEEecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCCCCCc
Q 015808 229 VKVNCVVMRGFND--DEICDFVELTRDRPINIRFIEFMPFDGNVWN 272 (400)
Q Consensus 229 v~i~~~v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~ 272 (400)
+.+++++++|.|+ +++.++.++++..++.+.+++|.|+.+..+.
T Consensus 259 VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~~~~~~ 304 (355)
T TIGR00048 259 VTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFPEADYE 304 (355)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCCCCCCC
Confidence 9999999999998 7899999999998888888888887665553
No 28
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.87 E-value=4.1e-20 Score=174.74 Aligned_cols=177 Identities=21% Similarity=0.324 Sum_probs=138.9
Q ss_pred ccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHh--CCCCEEEEEC-CCccchhh-HHHHHHHhh
Q 015808 84 HTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILR-LAYLFVT--SGVDKIRLTG-GEPTVRKD-IEEACFHLS 158 (400)
Q Consensus 84 ~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~-ii~~~~~--~g~~~i~~~G-GEPll~~~-l~~~i~~~~ 158 (400)
...+.|+.+.+||++|.||..+.. ...+.++.+++.. ++..... ..+..|+|+| ||||++++ +.++++.++
T Consensus 96 ~~t~cvSsq~GC~l~C~fC~tg~~----g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPllN~d~v~~~i~~l~ 171 (336)
T PRK14470 96 HHVVCLSSQAGCALGCAFCATGKL----GLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPFLNYDEVLRAAYALC 171 (336)
T ss_pred CCEEEEeCCCCcCCCCccccCCCC----CCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccccCHHHHHHHHHHHh
Confidence 457889999999999999998642 1223345555444 4433333 2478999999 99999866 788888887
Q ss_pred hcC-----CCceEEEEecCcchhhhHHHHHHcCC-CeEEEecCCCCHHHHHHhhcC---CCHHHHHHHHHHHHHcCCCcE
Q 015808 159 KLK-----GLKTLAMTTNGLTLARKLPKLKESGL-TSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPV 229 (400)
Q Consensus 159 ~~~-----g~~~~~i~TNG~ll~~~~~~l~~~g~-~~i~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v 229 (400)
+.. +. .+.|+|||.. ..+.++.+.+. ..|.|||++++++.++++.+. .+++.++++++.+.+.+. .+
T Consensus 172 ~~~~~~~~~~-~ItVsTnG~~--p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~r-ri 247 (336)
T PRK14470 172 DPAGARIDGR-RISISTAGVV--PMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRG-RV 247 (336)
T ss_pred CccccccCCC-ceEEEecCCh--HHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCC-Ce
Confidence 532 33 7999999975 45667777664 789999999999999999764 349999999999999877 99
Q ss_pred EEEEEEecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCC
Q 015808 230 KVNCVVMRGFND--DEICDFVELTRDRPINIRFIEFMPFDG 268 (400)
Q Consensus 230 ~i~~~v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~ 268 (400)
.+.+++++|.|+ +++.++.++++...+.++.++|.|..+
T Consensus 248 ~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~~ 288 (336)
T PRK14470 248 TLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDATG 288 (336)
T ss_pred EEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCCC
Confidence 999999999886 469999999998888888888888654
No 29
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.86 E-value=4.1e-20 Score=177.45 Aligned_cols=198 Identities=14% Similarity=0.226 Sum_probs=157.6
Q ss_pred ccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEECCCccchhh--HHHHHHHhhhc
Q 015808 84 HTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKD--IEEACFHLSKL 160 (400)
Q Consensus 84 ~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-~g~~~i~~~GGEPll~~~--l~~~i~~~~~~ 160 (400)
+..+.|.+|+.||++|+||+...... .....++.+++.++++.+++ .++..|.|+|||||+.++ +..+++.+++.
T Consensus 107 p~rvLl~vT~~C~~~CryC~R~~~~g--~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~I 184 (417)
T TIGR03820 107 PDRVLFLVSNTCAMYCRHCTRKRKVG--DRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAI 184 (417)
T ss_pred CCEEEEEEcCCcCCCCcCCCCcccCC--cccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhc
Confidence 55678999999999999999875321 23456899999999999987 489999999999999887 67778999988
Q ss_pred CCCceEEEEec-----CcchhhhH-HHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEE
Q 015808 161 KGLKTLAMTTN-----GLTLARKL-PKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV 234 (400)
Q Consensus 161 ~g~~~~~i~TN-----G~ll~~~~-~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~ 234 (400)
+++..+.|.|+ ++.+++.+ ..|.+.+..+|+++++++ +|. ++.+++++++|+++|+ ++..++|
T Consensus 185 phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp-~Ei---------t~~a~~Al~~L~~aGI-~l~nQsV 253 (417)
T TIGR03820 185 PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHP-REI---------TASSKKALAKLADAGI-PLGNQSV 253 (417)
T ss_pred CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCCh-HhC---------hHHHHHHHHHHHHcCC-EEEeece
Confidence 78866899999 77786554 677788777999999996 442 6999999999999999 9999999
Q ss_pred EecCCChh--HHHHHHHHHHhCCCeE-EEEeeecCCCCCCcccCCCCHHHHHHHHHHhCCCce
Q 015808 235 VMRGFNDD--EICDFVELTRDRPINI-RFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLR 294 (400)
Q Consensus 235 v~~~~n~~--el~~l~~~~~~~gv~~-~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~l~ 294 (400)
+.+|.|++ -+.++.+.+.+.||.. ..+..-+..|.....-......++++.++....++.
T Consensus 254 LLkGVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG~~ 316 (417)
T TIGR03820 254 LLAGVNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTPVGKGIEIIESLIGHTSGFA 316 (417)
T ss_pred EECCcCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCcHHHHHHHHHHHHHhCCCCC
Confidence 99999884 5888999888899854 344555666655544444445677777777776644
No 30
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.86 E-value=8e-20 Score=173.80 Aligned_cols=197 Identities=20% Similarity=0.315 Sum_probs=155.0
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----C-----C--CCEEEEEC-CCccchhh-HH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT----S-----G--VDKIRLTG-GEPTVRKD-IE 151 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~----~-----g--~~~i~~~G-GEPll~~~-l~ 151 (400)
..+.|..+.+|+++|.||..+.. ...+.++.++|...+..+.. . + +.+|+|.| ||||++.+ +.
T Consensus 121 ~tlCvSsQvGC~m~C~FCatg~~----g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLlN~d~V~ 196 (373)
T PRK14459 121 ATLCISSQAGCGMACPFCATGQG----GLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLANYKRVV 196 (373)
T ss_pred ceEEEEecCCCCCcCCCCCCCCC----CCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchhhHHHHH
Confidence 46889999999999999986531 34567999998887765532 1 1 67899999 99999866 78
Q ss_pred HHHHHhhhc----CCCc--eEEEEecCcchhhhHHHHHHcCCC-eEEEecCCCCHHHHHHhhcC---CCHHHHHHHHHHH
Q 015808 152 EACFHLSKL----KGLK--TLAMTTNGLTLARKLPKLKESGLT-SVNISLDTLVPAKFEFLTRR---KGHEKVMESINAA 221 (400)
Q Consensus 152 ~~i~~~~~~----~g~~--~~~i~TNG~ll~~~~~~l~~~g~~-~i~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l 221 (400)
++++.+.+. .|+. +++++|.| +...+.+|.+.++. .+.|||++++++.++++.+. .+++.++++++.+
T Consensus 197 ~~i~~l~~~~~~g~gis~r~ITvST~G--l~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~ 274 (373)
T PRK14459 197 AAVRRITAPAPEGLGISARNVTVSTVG--LVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYY 274 (373)
T ss_pred HHHHHHhCcccccCCccCCEEEEECcC--chhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 999998762 2442 67788888 44667888887765 79999999999999999985 3489999998777
Q ss_pred H-HcCCCcEEEEEEEecCCChh--HHHHHHHHHHhC---CCeEEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 015808 222 I-EVGYNPVKVNCVVMRGFNDD--EICDFVELTRDR---PINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 222 ~-~~g~~~v~i~~~v~~~~n~~--el~~l~~~~~~~---gv~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 288 (400)
. +.|. ++.+++++++|+|++ ++.++.++++.. .+.+++++|.|.++.+|.........++.+.+.+
T Consensus 275 ~~~~gr-rv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~ 346 (373)
T PRK14459 275 ADATGR-RVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVEREFVRRLRA 346 (373)
T ss_pred HHHhCC-EEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 6 5687 999999999999884 588899999887 5688899999988777776555555566666555
No 31
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.86 E-value=8.5e-20 Score=174.48 Aligned_cols=183 Identities=22% Similarity=0.344 Sum_probs=145.6
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----h--CCCCEEEEEC-CCccchhh-HHHHHHH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFV----T--SGVDKIRLTG-GEPTVRKD-IEEACFH 156 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~----~--~g~~~i~~~G-GEPll~~~-l~~~i~~ 156 (400)
..+.|+...+||++|.||..+.. ...+.++.+++...+.... . .++..|.|+| ||||++++ +.++++.
T Consensus 109 ~t~ciSsqvGC~~~C~FC~t~~~----~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLln~~~v~~~l~~ 184 (356)
T PRK14455 109 NSVCVTTQVGCRIGCTFCASTLG----GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFDNYDNVMDFLRI 184 (356)
T ss_pred ceEEEECCCCCCCCCCcCCCCCC----CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccCCHHHHHHHHHH
Confidence 45778888999999999987642 3466799999888665432 2 3578899999 99999854 8999999
Q ss_pred hhhcCCC----ceEEEEecCcchhhhHHHHHHcCC-CeEEEecCCCCHHHHHHhhcC---CCHHHHHHHHHHHHHcCCCc
Q 015808 157 LSKLKGL----KTLAMTTNGLTLARKLPKLKESGL-TSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNP 228 (400)
Q Consensus 157 ~~~~~g~----~~~~i~TNG~ll~~~~~~l~~~g~-~~i~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~ 228 (400)
+++..|+ .++.|+|||.. +.+..+.+.++ ..+.+||++++++.++++.+. .+++.++++++.+.+.+..+
T Consensus 185 l~~~~g~~~s~r~itvsT~G~~--~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~ 262 (356)
T PRK14455 185 INDDKGLAIGARHITVSTSGIA--PKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRR 262 (356)
T ss_pred HhcccCcccCCCceEEEecCch--HhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCe
Confidence 9864344 36889999965 45666776553 357799999999999987764 34899999999887754339
Q ss_pred EEEEEEEecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCCCCCcc
Q 015808 229 VKVNCVVMRGFND--DEICDFVELTRDRPINIRFIEFMPFDGNVWNV 273 (400)
Q Consensus 229 v~i~~~v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~~ 273 (400)
+.+++++++|.|+ +++.+++++++..+..+.+++|.|.++.+|..
T Consensus 263 v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ 309 (356)
T PRK14455 263 VTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVR 309 (356)
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcC
Confidence 9999999999998 68999999999988888889999988776654
No 32
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.6e-20 Score=167.63 Aligned_cols=186 Identities=25% Similarity=0.403 Sum_probs=142.9
Q ss_pred hhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhH-HH
Q 015808 76 LIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDL--TPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDI-EE 152 (400)
Q Consensus 76 ~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~--~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l-~~ 152 (400)
+.|.+| .......+.+||++|.||.++...+. ......++.+++..... ...+...|+|+||||+++.++ .+
T Consensus 29 ~~d~~g---~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~--~~~~~~gvt~SGGEP~~q~e~~~~ 103 (260)
T COG1180 29 LVDGPG---SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF--YSESGGGVTFSGGEPTLQAEFALD 103 (260)
T ss_pred CcCCCC---cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhh--hcCCCCEEEEECCcchhhHHHHHH
Confidence 667776 33334457999999999998865431 11223344444333322 122567999999999999885 78
Q ss_pred HHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEE
Q 015808 153 ACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN 232 (400)
Q Consensus 153 ~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~ 232 (400)
+.+.+++. |+ .+.+.|||+...+.++.|.+. +|.+.+.|.+++++.|..+.+... +.++++++.+.+.|+ .+.++
T Consensus 104 ~~~~ake~-Gl-~~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~~-~~vl~~~~~l~~~g~-~ve~r 178 (260)
T COG1180 104 LLRAAKER-GL-HVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGADN-EPVLENLELLADLGV-HVEIR 178 (260)
T ss_pred HHHHHHHC-CC-cEEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCCc-HHHHHHHHHHHcCCC-eEEEE
Confidence 99998885 99 899999999888878888887 899999999999998999998776 999999999999999 99999
Q ss_pred EEEecCC--ChhHHHHHHHHHHhCCC--eEEEEeeecCCCCCC
Q 015808 233 CVVMRGF--NDDEICDFVELTRDRPI--NIRFIEFMPFDGNVW 271 (400)
Q Consensus 233 ~~v~~~~--n~~el~~l~~~~~~~gv--~~~~~~~~p~~~~~~ 271 (400)
+++.||+ +.+++.++++++.+.+. .+.+..|.|.....|
T Consensus 179 ~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~ 221 (260)
T COG1180 179 TLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKD 221 (260)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCccccc
Confidence 9999986 45789999999997433 355555666544444
No 33
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.85 E-value=9.9e-20 Score=173.69 Aligned_cols=181 Identities=20% Similarity=0.348 Sum_probs=144.8
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---H-hC--C---CCEEEEEC-CCccchhh-HHHH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLF---V-TS--G---VDKIRLTG-GEPTVRKD-IEEA 153 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~---~-~~--g---~~~i~~~G-GEPll~~~-l~~~ 153 (400)
..+.+..+.+||++|.||..+.. ...+.++.+++...+... . +. | +..|.|+| ||||++++ +.+.
T Consensus 102 ~t~CvSsq~GC~~~C~FC~tg~~----g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln~~~v~~~ 177 (354)
T PRK14460 102 YTQCLSCQVGCAMGCTFCSTGTM----GFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLNLDEVMRS 177 (354)
T ss_pred eeEEeeCCCCcCCCCccCCCCCC----CCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCCHHHHHHH
Confidence 34678888999999999976531 235578999988877322 2 22 2 67899999 99999987 7799
Q ss_pred HHHhhhcCCC----ceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCC---CHHHHHHHHHHHHH-cC
Q 015808 154 CFHLSKLKGL----KTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIE-VG 225 (400)
Q Consensus 154 i~~~~~~~g~----~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~-~g 225 (400)
++.+++..|+ ..+.|+|||. .+.++.|.+.++..+.||||+++++.++++.+.. .++.++++++.+.. .+
T Consensus 178 l~~l~~~~Gl~~~~r~itvsT~G~--~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~ 255 (354)
T PRK14460 178 LRTLNNEKGLNFSPRRITVSTCGI--EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTR 255 (354)
T ss_pred HHHHhhhhccCCCCCeEEEECCCC--hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcC
Confidence 9988764454 2699999996 5678889888888999999999999999997754 48999998886554 45
Q ss_pred CCcEEEEEEEecCCChh--HHHHHHHHHHhCCCeEEEEeeecCCCCCCc
Q 015808 226 YNPVKVNCVVMRGFNDD--EICDFVELTRDRPINIRFIEFMPFDGNVWN 272 (400)
Q Consensus 226 ~~~v~i~~~v~~~~n~~--el~~l~~~~~~~gv~~~~~~~~p~~~~~~~ 272 (400)
. ++.+++++++|.|+. ++.++++++...+..+.+++|.|..+..+.
T Consensus 256 ~-~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~ 303 (354)
T PRK14460 256 E-RVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYS 303 (354)
T ss_pred C-eEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCC
Confidence 5 899999999999884 799999999998878888888887665553
No 34
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.85 E-value=3.1e-20 Score=175.08 Aligned_cols=151 Identities=19% Similarity=0.316 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHHHh---CCCCEEEEECCCccchhhH-HHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEE
Q 015808 116 LLSLNEILRLAYLFVT---SGVDKIRLTGGEPTVRKDI-EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~---~g~~~i~~~GGEPll~~~l-~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~ 191 (400)
.++.+++.+.++.... .....|.|+|||||+++++ .++++++++. |+ .+.+.|||+++++.+..++.. ++.+.
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~l~~l~~~~k~~-g~-~~~i~TnG~~~~~~~~~ll~~-~d~~~ 181 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQPEFALALLQACHER-GI-HTAVETSGFTPWETIEKVLPY-VDLFL 181 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhchHHHHHHHHHHHHHc-CC-cEeeeCCCCCCHHHHHHHHhh-CCEEE
Confidence 4677777777765432 2346899999999999996 6999999985 88 799999999887778887764 78899
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--hhHHHHHHHHHHhCC--C-eEEEEeeecC
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN--DDEICDFVELTRDRP--I-NIRFIEFMPF 266 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n--~~el~~l~~~~~~~g--v-~~~~~~~~p~ 266 (400)
||+|+.+++.|++++|. +++.++++|+.|.+.|. ++.++++++++.| .++++++++++.+++ + .+.++.+.|.
T Consensus 182 isl~~~~~~~~~~~~g~-~~~~vl~~i~~l~~~~~-~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~~~ 259 (295)
T TIGR02494 182 FDIKHLDDERHKEVTGV-DNEPILENLEALAAAGK-NVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYHRL 259 (295)
T ss_pred EeeccCChHHHHHHhCC-ChHHHHHHHHHHHhCCC-cEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCCch
Confidence 99999999999999884 68999999999999999 9999999988765 468999999999987 4 4555566666
Q ss_pred CCCCC
Q 015808 267 DGNVW 271 (400)
Q Consensus 267 ~~~~~ 271 (400)
+..+|
T Consensus 260 g~~~~ 264 (295)
T TIGR02494 260 GENKY 264 (295)
T ss_pred hHHHH
Confidence 54444
No 35
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.85 E-value=7.7e-20 Score=172.85 Aligned_cols=192 Identities=17% Similarity=0.255 Sum_probs=141.6
Q ss_pred EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEECCCccchhh--HHHHHHHhhhcCCC
Q 015808 87 LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGL 163 (400)
Q Consensus 87 l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-~g~~~i~~~GGEPll~~~--l~~~i~~~~~~~g~ 163 (400)
+.+.+|.+||++|+||+..... .....++.+++.++++.+.+ .++..|.|+|||||++++ +.++++.+.....+
T Consensus 98 ~l~~~t~~Cn~~Cr~C~~~~~~---~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~ 174 (321)
T TIGR03821 98 VLLIVTGGCAINCRYCFRRHFP---YQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKDHRLDWLLNLLEQIPHL 174 (321)
T ss_pred EEEEeCCCcCCcCcCCCCCCcC---CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCchHHHHHHHHHHhCCCC
Confidence 4466999999999999986532 22345788899999988875 478999999999999988 88999888876555
Q ss_pred ceEEEEecC-----cchhhh-HHHHHHcCCCeE-EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEe
Q 015808 164 KTLAMTTNG-----LTLARK-LPKLKESGLTSV-NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM 236 (400)
Q Consensus 164 ~~~~i~TNG-----~ll~~~-~~~l~~~g~~~i-~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~ 236 (400)
..+.|.|.. .++++. ++.|.+.|+..+ .+|+||+ .|.+ +.+.++|+.++++|+ .+.+++|+.
T Consensus 175 ~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~-~Ei~---------d~~~~ai~~L~~~Gi-~v~~qtvll 243 (321)
T TIGR03821 175 KRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHA-NEID---------AEVADALAKLRNAGI-TLLNQSVLL 243 (321)
T ss_pred cEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCCh-HhCc---------HHHHHHHHHHHHcCC-EEEecceee
Confidence 556665521 245544 467777787666 4799997 4665 447779999999999 999999999
Q ss_pred cCCCh--hHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCCC
Q 015808 237 RGFND--DEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPG 292 (400)
Q Consensus 237 ~~~n~--~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~ 292 (400)
+|.|+ +++.++.+.+.+.|+. +.++.+.|.++.....-......++++.+.+..++
T Consensus 244 kgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 244 RGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPG 302 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCC
Confidence 97655 7899999999999995 55667778776543222223344555666555543
No 36
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.85 E-value=2.4e-19 Score=170.79 Aligned_cols=181 Identities=22% Similarity=0.360 Sum_probs=141.6
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCEEEEEC-CCccchhh-HHHHHHHhhhcC
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFV-TSGVDKIRLTG-GEPTVRKD-IEEACFHLSKLK 161 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~-~~g~~~i~~~G-GEPll~~~-l~~~i~~~~~~~ 161 (400)
..+.|+++.+||++|.||.... . ...+.++.+++...+..+. ..++..|.|+| ||||++.+ +.+.++.+.+..
T Consensus 103 ~t~cvSsq~GC~~~C~FC~tg~-~---~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEPl~n~~~vi~~l~~l~~~~ 178 (349)
T PRK14463 103 NTLCISSQVGCAMGCAFCLTGT-F---RLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEPLANLDNVIPALQILTDPD 178 (349)
T ss_pred cEEEEEecCCcCCCCccCCCCC-C---CCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCcchhcHHHHHHHHHHhhccc
Confidence 5688999999999999998653 1 2356799999988666554 35689999999 99999874 788888886533
Q ss_pred CC----ceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcC---CCHHHHHHHHHHHHHcCCCcEEEEEE
Q 015808 162 GL----KTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCV 234 (400)
Q Consensus 162 g~----~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~~ 234 (400)
|+ .++.|+|||.. +.+.++.......+.||+++++++.++++.+. -.+++++++++.+...+..++.++++
T Consensus 179 gl~~s~r~itVsTnGl~--~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyv 256 (349)
T PRK14463 179 GLQFSTRKVTVSTSGLV--PEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYV 256 (349)
T ss_pred ccCcCCceEEEECCCch--HHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 44 37899999953 45556655433367799999999999998543 34899999988887665448999999
Q ss_pred EecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCCCCC
Q 015808 235 VMRGFND--DEICDFVELTRDRPINIRFIEFMPFDGNVW 271 (400)
Q Consensus 235 v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~~~~ 271 (400)
+++|.|+ +++.++.+++++.++.+++++|.|.++..+
T Consensus 257 LI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~ 295 (349)
T PRK14463 257 MIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDF 295 (349)
T ss_pred EeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCC
Confidence 9999988 789999999999888888888888765433
No 37
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.84 E-value=3e-19 Score=167.95 Aligned_cols=197 Identities=21% Similarity=0.322 Sum_probs=148.0
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEEC-CCccchhh-HHHHHHHhhhcC
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLK 161 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-~g~~~i~~~G-GEPll~~~-l~~~i~~~~~~~ 161 (400)
..+.|..+-+||++|.||..+.. .....++.++|...+..+.. .++..|+|+| ||||++.+ +.+.++.+.+..
T Consensus 103 ~t~cvSsQvGC~~~C~FC~Tg~~----g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 103 ATLCVSSQVGCKMNCLFCMTGKQ----GFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPLDNLDEVLKALEILTAPY 178 (345)
T ss_pred eEEEEEcCCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCcccHHHHHHHHHHHhhcc
Confidence 45777778899999999986542 23356999999888876643 2588999999 99999765 777788776544
Q ss_pred CC----ceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCC---CHHHHHHHHHHHHHcCCCcEEEEEE
Q 015808 162 GL----KTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIEVGYNPVKVNCV 234 (400)
Q Consensus 162 g~----~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~~g~~~v~i~~~ 234 (400)
|+ ..+.|+|||.. ..+.++.+..-..+.+||++++++.++++.+.. .++.++++++...+...+++.+.++
T Consensus 179 g~~~s~r~ItVsT~G~~--~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~ 256 (345)
T PRK14466 179 GYGWSPKRITVSTVGLK--KGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYI 256 (345)
T ss_pred ccCcCCceEEEEcCCCc--hHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 43 37999999944 334454443334789999999999999998753 3899999999987664448999999
Q ss_pred EecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 015808 235 VMRGFND--DEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 287 (400)
Q Consensus 235 v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 287 (400)
+++|+|+ +++.+++++++..++.++.+.|.|..+..+........+++.+.+.
T Consensus 257 Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L~ 311 (345)
T PRK14466 257 VFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIPGVDLEGSDMARMEAFRDYLT 311 (345)
T ss_pred EeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 9999988 4699999999998889999999997765444333333334444333
No 38
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.84 E-value=1.9e-19 Score=164.04 Aligned_cols=179 Identities=22% Similarity=0.343 Sum_probs=145.1
Q ss_pred CchhhhhcCCCccEEEEEcCc-ccCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHhC------CCCEEEEEC-CC
Q 015808 73 SDMLIDSFGRMHTYLRISLTE-RCNLRCHYCMPPEGVDLTP-KPQLLSLNEILRLAYLFVTS------GVDKIRLTG-GE 143 (400)
Q Consensus 73 ~~~~~~~~~~~~~~l~i~iT~-~CNl~C~yC~~~~~~~~~~-~~~~~s~e~i~~ii~~~~~~------g~~~i~~~G-GE 143 (400)
.+.-.++||.... |...++- .||++|.||+.+....... ....+..+.|..-++.+... .++.|+|+| ||
T Consensus 12 gp~ksrryG~slg-i~~tP~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GE 90 (296)
T COG0731 12 GPVKSRRYGISLG-IQMTPSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGE 90 (296)
T ss_pred CCccccccccccC-CccccchhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCC
Confidence 3445567888766 6666777 9999999999854433322 45667788888887777655 578999999 99
Q ss_pred ccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCC---CHHHHHHHHHH
Q 015808 144 PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINA 220 (400)
Q Consensus 144 Pll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~ 220 (400)
|+|++++.++++.+++..++ .+.+.|||++ ++..+.|. ..+.|.+|||++++++|+++.+.. .++++++.|+.
T Consensus 91 PTLy~~L~elI~~~k~~g~~-~tflvTNgsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~ 166 (296)
T COG0731 91 PTLYPNLGELIEEIKKRGKK-TTFLVTNGSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEI 166 (296)
T ss_pred cccccCHHHHHHHHHhcCCc-eEEEEeCCCh-HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 99999999999999996335 7899999998 55556666 378999999999999999998763 39999999999
Q ss_pred HHHc-CCCcEEEEEEEecCCChhH--HHHHHHHHHhCCCe
Q 015808 221 AIEV-GYNPVKVNCVVMRGFNDDE--ICDFVELTRDRPIN 257 (400)
Q Consensus 221 l~~~-g~~~v~i~~~v~~~~n~~e--l~~l~~~~~~~gv~ 257 (400)
+.+. .- ...+++++.+|.|+++ +++++++++....+
T Consensus 167 ~~~~~~~-~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd 205 (296)
T COG0731 167 FRSEYKG-RTVIRTTLVKGINDDEEELEEYAELLERINPD 205 (296)
T ss_pred hhhcCCC-cEEEEEEEeccccCChHHHHHHHHHHHhcCCC
Confidence 9997 54 7889999999999866 99999999986554
No 39
>PRK07094 biotin synthase; Provisional
Probab=99.84 E-value=8.1e-19 Score=167.57 Aligned_cols=207 Identities=19% Similarity=0.212 Sum_probs=165.9
Q ss_pred hhcCCCccE-EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccch-hhHHHHH
Q 015808 78 DSFGRMHTY-LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-KDIEEAC 154 (400)
Q Consensus 78 ~~~~~~~~~-l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll~-~~l~~~i 154 (400)
..+|..+.. ..|++|++|+.+|.||+....... .....++.+++.+.++.+.+.|+..|.|+||+ |.+. ..+.+++
T Consensus 31 ~~~g~~v~~~~~i~~s~gC~~~C~fC~~~~~~~~-~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~ 109 (323)
T PRK07094 31 KYVGDEVHLRGLIEFSNYCRNNCLYCGLRRDNKN-IERYRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADII 109 (323)
T ss_pred HhCCCEEEEEEEEEECCCCCCCCEeCCcccCCCC-CcCcCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHH
Confidence 345665432 358889999999999998653221 12334799999999999989999999999997 5554 4588999
Q ss_pred HHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEE
Q 015808 155 FHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV 234 (400)
Q Consensus 155 ~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~ 234 (400)
+.+++..++ .+.+ +.|.+..+.+..|+++|++.+.+++++.+++.++.+++..+++++++.++.++++|+ .+...++
T Consensus 110 ~~i~~~~~l-~i~~-~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi-~v~~~~i 186 (323)
T PRK07094 110 KEIKKELDV-AITL-SLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGY-EVGSGFM 186 (323)
T ss_pred HHHHccCCc-eEEE-ecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC-eecceEE
Confidence 999875455 4554 345555678899999999999999999999999999987789999999999999999 7877777
Q ss_pred Ee-cCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 015808 235 VM-RGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 235 v~-~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 288 (400)
+. +|.+.+++.+.++++++++++ +.+..+.|..++++......+.++.++.+..
T Consensus 187 iGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~ 242 (323)
T PRK07094 187 VGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLAL 242 (323)
T ss_pred EECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHH
Confidence 75 588999999999999999885 6778899999988876666677766665544
No 40
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.83 E-value=2.6e-19 Score=170.10 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=131.8
Q ss_pred ccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEECCCccchhh--HHHHHHHhhhc
Q 015808 84 HTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKD--IEEACFHLSKL 160 (400)
Q Consensus 84 ~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-~g~~~i~~~GGEPll~~~--l~~~i~~~~~~ 160 (400)
+..+.|.+|.+||++|+||+..... ......+.+++.++++.+.+ .++..|.|+|||||+.++ +.++++.+++.
T Consensus 112 ~~rvll~~T~gCn~~C~yC~~~~~~---~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i 188 (331)
T TIGR00238 112 VNRALFLVKGGCAVNCRYCFRRHFP---YKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEI 188 (331)
T ss_pred CCcEEEEeCCCCCCCCcCCCCCCcC---CCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhc
Confidence 3456799999999999999985421 11111237889999998875 478999999999999887 88999999876
Q ss_pred CCCceEEEE--ecCc---chhhhH-HHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEE
Q 015808 161 KGLKTLAMT--TNGL---TLARKL-PKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV 234 (400)
Q Consensus 161 ~g~~~~~i~--TNG~---ll~~~~-~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~ 234 (400)
.++..+.+. |+++ .+++++ ..|.+.|+..+.++.++..++.+ +.+.++++.|.++|+ .+.+++|
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei~---------~~~~~ai~~L~~aGi-~v~~qtv 258 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEIT---------EEFAEAMKKLRTVNV-TLLNQSV 258 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhCC---------HHHHHHHHHHHHcCC-EEEeecc
Confidence 544344444 4444 466555 66777788888899777545432 678899999999999 9999999
Q ss_pred EecCCChh--HHHHHHHHHHhCCCe-EEEEeeecCCCCC
Q 015808 235 VMRGFNDD--EICDFVELTRDRPIN-IRFIEFMPFDGNV 270 (400)
Q Consensus 235 v~~~~n~~--el~~l~~~~~~~gv~-~~~~~~~p~~~~~ 270 (400)
+++|.|++ .+.++.+.+.+.|+. +..+.+.|.++..
T Consensus 259 Ll~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~ 297 (331)
T TIGR00238 259 LLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAK 297 (331)
T ss_pred eECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcc
Confidence 99987663 488899999999984 5566777777653
No 41
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.83 E-value=8.1e-19 Score=166.64 Aligned_cols=177 Identities=21% Similarity=0.347 Sum_probs=137.9
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCC--CCEEEEEC-CCccchhhHHHHHHHhhhcC
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSG--VDKIRLTG-GEPTVRKDIEEACFHLSKLK 161 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g--~~~i~~~G-GEPll~~~l~~~i~~~~~~~ 161 (400)
.++.|+...+||++|.||..+.. ...+.++.++|...+..+...| +..|+|+| ||||+++++.++++.+.+..
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~~----g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln~~v~~~i~~l~~~~ 175 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGSI----GLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALANPELFDALKILTDPN 175 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCCC----CCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCCHHHHHHHHHHhccc
Confidence 46888888999999999987642 3456799999999887765554 78999999 99999999999998887633
Q ss_pred --C--CceEEEEecCcch-hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCC---HHHHHHHHHHHHH-cCCCcEEEE
Q 015808 162 --G--LKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG---HEKVMESINAAIE-VGYNPVKVN 232 (400)
Q Consensus 162 --g--~~~~~i~TNG~ll-~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~l~~-~g~~~v~i~ 232 (400)
+ ...+.|+|+|... -+.+..... ...+.+|+++++++.++++.+... .+.++++++.... .|. ++.++
T Consensus 176 ~~~~~~r~itVsT~G~~~~i~~l~~~~~--~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~-~V~ir 252 (347)
T PRK14453 176 LFGLSQRRITISTIGIIPGIQRLTQEFP--QVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGR-KVYIA 252 (347)
T ss_pred ccCCCCCcEEEECCCCchhHHHHHhhcc--CcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCC-cEEEE
Confidence 2 2368999999663 133333222 236788999999999999887543 7888888877665 676 99999
Q ss_pred EEEecCCChh--HHHHHHHHHHhC-----CCeEEEEeeecCCC
Q 015808 233 CVVMRGFNDD--EICDFVELTRDR-----PINIRFIEFMPFDG 268 (400)
Q Consensus 233 ~~v~~~~n~~--el~~l~~~~~~~-----gv~~~~~~~~p~~~ 268 (400)
+++++|+|++ ++.+++++++.. ...+.+++|.|+++
T Consensus 253 y~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~ 295 (347)
T PRK14453 253 YIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDK 295 (347)
T ss_pred EEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCC
Confidence 9999999996 899999999986 34677777777654
No 42
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.83 E-value=5.9e-19 Score=155.93 Aligned_cols=180 Identities=27% Similarity=0.431 Sum_probs=145.0
Q ss_pred EEcCcccCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhc-CCCceE
Q 015808 89 ISLTERCNLRCHYCMPPEGVDLTPKPQLLS-LNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTL 166 (400)
Q Consensus 89 i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s-~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~-~g~~~~ 166 (400)
|++|++||++|.||+....... ...... .+++..++......+...+.++||||++++.+.++++.+++. .++ .+
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~~~~~~~i~~~~~~~~~~-~~ 77 (204)
T cd01335 1 LELTRGCNLNCGFCSNPASKGR--GPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYPELAELLRRLKKELPGF-EI 77 (204)
T ss_pred CccCCccCCcCCCCCCCCCCCC--CccccccHHHHHHHHHHHHhcCceEEEEeCCcCCccHhHHHHHHHHHhhCCCc-eE
Confidence 4678999999999998764321 112122 256677777777778889999999999999999999999875 255 79
Q ss_pred EEEecCcch-hhhHHHHHHcCCCeEEEecCCCCHHHHHHhh-cCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCh-hH
Q 015808 167 AMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT-RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND-DE 243 (400)
Q Consensus 167 ~i~TNG~ll-~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir-~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~-~e 243 (400)
.+.|||..+ .+.++.|.++|+..|.+|+|+.+++.++.+. +..++++++++++.+.+.|+ .+.+.+++..+.+. ++
T Consensus 78 ~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~i~g~~~~~~~~ 156 (204)
T cd01335 78 SIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGL-GLSTTLLVGLGDEDEED 156 (204)
T ss_pred EEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCC-CceEEEEEecCCChhHH
Confidence 999999886 4667899999999999999999999999887 66669999999999999999 88888888775443 67
Q ss_pred HHHHHHHHHhCC-C-eEEEEeeecCCCCCCc
Q 015808 244 ICDFVELTRDRP-I-NIRFIEFMPFDGNVWN 272 (400)
Q Consensus 244 l~~l~~~~~~~g-v-~~~~~~~~p~~~~~~~ 272 (400)
+.+.++.+.+.+ + .+.+..+.|.+++++.
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 157 DLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 888888888765 4 4777888898887766
No 43
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.82 E-value=2.5e-18 Score=163.21 Aligned_cols=179 Identities=18% Similarity=0.349 Sum_probs=135.2
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEC-CCccchhh-HHHHHHHhh
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT----SGVDKIRLTG-GEPTVRKD-IEEACFHLS 158 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~----~g~~~i~~~G-GEPll~~~-l~~~i~~~~ 158 (400)
..+.|+.+.+|+++|.||..+.. ...+.++.+++...+..+.. .++..|+|.| ||||++.+ +.++++.++
T Consensus 99 ~t~cvSsq~GC~l~C~FC~t~~~----G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~N~d~v~~~l~~l~ 174 (348)
T PRK14467 99 LTLCVSSQVGCAVGCKFCATAKD----GLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLANYENVRKAVQIMT 174 (348)
T ss_pred cEEEEEcCCCCCCcCcCCCCCCC----CCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhcCHHHHHHHHHHHc
Confidence 46889999999999999987642 23367898888876654433 2468999999 99999988 579999997
Q ss_pred hcCCC----ceEEEEecCcchhhhHHHHHHc----CCCeEEEecCCCCHHHHHHhhcCCC---HHHHHHHHHHHH-HcCC
Q 015808 159 KLKGL----KTLAMTTNGLTLARKLPKLKES----GLTSVNISLDTLVPAKFEFLTRRKG---HEKVMESINAAI-EVGY 226 (400)
Q Consensus 159 ~~~g~----~~~~i~TNG~ll~~~~~~l~~~----g~~~i~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~l~-~~g~ 226 (400)
+..|+ +++.|+|+|.. ..+.++... .+ .+.+||++++++.|+++.+... ++.+++.++... +.|.
T Consensus 175 ~~~gl~~~~r~itvsT~G~~--~~i~~l~~~~~l~~v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~ 251 (348)
T PRK14467 175 SPWGLDLSKRRITISTSGII--HQIKRMAEDPVMPEV-NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGR 251 (348)
T ss_pred ChhccCcCCCcEEEECCCCh--hHHHHHHhhccccCe-eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCC
Confidence 64455 26999999965 334344332 24 5779999999999999998643 788888887666 4566
Q ss_pred CcEEEEEEEecCCCh--hHHHHHHHHHHhCC--CeEEEEeeecCCCCCC
Q 015808 227 NPVKVNCVVMRGFND--DEICDFVELTRDRP--INIRFIEFMPFDGNVW 271 (400)
Q Consensus 227 ~~v~i~~~v~~~~n~--~el~~l~~~~~~~g--v~~~~~~~~p~~~~~~ 271 (400)
++.+++++++|.|+ +++.++.++++..+ ..+..++|.|+.+..+
T Consensus 252 -~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~ 299 (348)
T PRK14467 252 -RIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPY 299 (348)
T ss_pred -eEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCC
Confidence 99999999999986 67999999998864 3455556666555444
No 44
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.82 E-value=2.5e-18 Score=163.12 Aligned_cols=181 Identities=22% Similarity=0.373 Sum_probs=139.8
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh---CCCCEEEEEC-CCccchhh-HHHHHHHhhh
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT---SGVDKIRLTG-GEPTVRKD-IEEACFHLSK 159 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~---~g~~~i~~~G-GEPll~~~-l~~~i~~~~~ 159 (400)
..+.+...-+||++|.||..+.. .....++.+++...+..+.. .++..|+|+| ||||++++ +.+.++.+.+
T Consensus 101 ~t~cvSsqvGC~~~C~FC~tg~~----g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPlln~~~v~~~i~~l~~ 176 (345)
T PRK14457 101 LTVCVSSQVGCPMACDFCATGKG----GLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLLNIDEVLAAIRCLNQ 176 (345)
T ss_pred CEEEEeCCCCCCCcCCcCCCCCC----CCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCccccCHHHHHHHHHHHhc
Confidence 34667667799999999976532 23446898888887765543 2578999999 99999987 6788888875
Q ss_pred cCCC--ceEEEEecCcchhhhHHHHHHcC------C-CeEEEecCCCCHHHHHHhhcCCC---HHHHHHHHHH-HHHcCC
Q 015808 160 LKGL--KTLAMTTNGLTLARKLPKLKESG------L-TSVNISLDTLVPAKFEFLTRRKG---HEKVMESINA-AIEVGY 226 (400)
Q Consensus 160 ~~g~--~~~~i~TNG~ll~~~~~~l~~~g------~-~~i~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~-l~~~g~ 226 (400)
..++ ..+.++|+| +.+.+.+|.+.. . ..+.+||++++++.++++.+... ++.++++++. +.+.|.
T Consensus 177 ~~~i~~r~itvST~G--~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr 254 (345)
T PRK14457 177 DLGIGQRRITVSTVG--VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGR 254 (345)
T ss_pred ccCCccCceEEECCC--chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCC
Confidence 3344 368899999 445577777655 2 26999999999999999977432 8888877765 556677
Q ss_pred CcEEEEEEEecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCCCCCc
Q 015808 227 NPVKVNCVVMRGFND--DEICDFVELTRDRPINIRFIEFMPFDGNVWN 272 (400)
Q Consensus 227 ~~v~i~~~v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~ 272 (400)
++.+++++++|+|+ +++.+++++++.+++.+..+.|.|.++.++.
T Consensus 255 -~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~ 301 (345)
T PRK14457 255 -RVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQ 301 (345)
T ss_pred -EEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCC
Confidence 89999999999998 6799999999988777777777777665554
No 45
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.81 E-value=8.4e-18 Score=162.32 Aligned_cols=149 Identities=17% Similarity=0.241 Sum_probs=124.9
Q ss_pred CCCCCCHHHHHHHHHHHHh-C--CCCEEEEEC-CCccchhhHHHHHHHhhhcCCCceEEEE-ecCcch--hhhHHHHHHc
Q 015808 113 KPQLLSLNEILRLAYLFVT-S--GVDKIRLTG-GEPTVRKDIEEACFHLSKLKGLKTLAMT-TNGLTL--ARKLPKLKES 185 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~-~--g~~~i~~~G-GEPll~~~l~~~i~~~~~~~g~~~~~i~-TNG~ll--~~~~~~l~~~ 185 (400)
....++.+++.+.+.+... . ....|+|+| |||++++++.++++.+++. ++ ++.+. |||+.+ .+.++++++.
T Consensus 50 ~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~-gi-~taI~~TnG~~l~~~e~~~~L~~~ 127 (404)
T TIGR03278 50 NGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDL-GL-PIHLGYTSGKGFDDPEIAEFLIDN 127 (404)
T ss_pred cCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhC-CC-CEEEeCCCCcccCCHHHHHHHHHc
Confidence 3567889998888876543 2 346899998 5888899999999999985 88 68885 998744 4678999999
Q ss_pred CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCh-hHHHHHHHHHHhCCCe-EEEEee
Q 015808 186 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRDRPIN-IRFIEF 263 (400)
Q Consensus 186 g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~-~el~~l~~~~~~~gv~-~~~~~~ 263 (400)
+++.|.+|+++.+++.|++++|....++++++++.+.+ ++ .+.+++++.+|.|+ +++.++++++.++++. +....|
T Consensus 128 gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~-~v~~~ivlIPGiND~eel~~ti~~L~~lg~~~V~L~~y 205 (404)
T TIGR03278 128 GVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SC-EVHAASVIIPGVNDGDVLWKTCADLESWGAKALILMRF 205 (404)
T ss_pred CCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cC-CEEEEEEEeCCccCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 99999999999999999999998777999999999999 57 89999999999998 7889999999998874 444444
Q ss_pred ec
Q 015808 264 MP 265 (400)
Q Consensus 264 ~p 265 (400)
.+
T Consensus 206 ~~ 207 (404)
T TIGR03278 206 AN 207 (404)
T ss_pred cc
Confidence 43
No 46
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.81 E-value=4.3e-18 Score=160.61 Aligned_cols=176 Identities=18% Similarity=0.257 Sum_probs=137.1
Q ss_pred ccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh---CCCCEEEEEC-CCccchhh-HHHHHHHhh
Q 015808 84 HTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT---SGVDKIRLTG-GEPTVRKD-IEEACFHLS 158 (400)
Q Consensus 84 ~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~---~g~~~i~~~G-GEPll~~~-l~~~i~~~~ 158 (400)
..++.|+...+||++|+||+.+.. .-.+.++..+|...+-.+.+ ..+.+|.|.| ||||++.+ +.+.+++++
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~~----g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~ 179 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAKL----EFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILH 179 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCCC----CccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHh
Confidence 456888888999999999998652 23345677776665544443 3478999999 99999965 788888887
Q ss_pred hcCC----CceEEEEecCcchhhhHHHHHHc-CCCeEEEecCCCCHHHHHHhhc---CCCHHHHHHHHHHHH-HcCCCcE
Q 015808 159 KLKG----LKTLAMTTNGLTLARKLPKLKES-GLTSVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAI-EVGYNPV 229 (400)
Q Consensus 159 ~~~g----~~~~~i~TNG~ll~~~~~~l~~~-g~~~i~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~-~~g~~~v 229 (400)
+..+ ..+++|+|||.. +.+.+|.+. .-..+.|||++++++.++++.. ..+++.++++++.+. +.+. ++
T Consensus 180 ~~~~~~~~~r~itvST~G~~--~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r-~v 256 (342)
T PRK14465 180 DPDAFNLGAKRITISTSGVV--NGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKR-RI 256 (342)
T ss_pred ChhhhcCCCCeEEEeCCCch--HHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCC-EE
Confidence 6422 237999999965 556666643 2348999999999999999864 335899999999776 5566 99
Q ss_pred EEEEEEecCCCh--hHHHHHHHHHHhCCCeEEEEeeecC
Q 015808 230 KVNCVVMRGFND--DEICDFVELTRDRPINIRFIEFMPF 266 (400)
Q Consensus 230 ~i~~~v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~ 266 (400)
.+.+++++|+|+ +++.++.++++.+++.+..++|.|.
T Consensus 257 ~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 257 TFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 999999999987 5899999999998888888888874
No 47
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.81 E-value=2.6e-18 Score=166.10 Aligned_cols=208 Identities=18% Similarity=0.213 Sum_probs=158.3
Q ss_pred hhhhcCCCcc-EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhh---HH
Q 015808 76 LIDSFGRMHT-YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD---IE 151 (400)
Q Consensus 76 ~~~~~~~~~~-~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~---l~ 151 (400)
..+.+|+.+. ++.+++|+.|+.+|.||....... .....++.+++.+.+..+.+.|+..|.|+|||+....+ +.
T Consensus 64 r~~~~G~~v~l~~~in~Tn~C~~~C~YC~f~~~~~--~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~ 141 (371)
T PRK09240 64 TRQRFGNTISLYTPLYLSNYCANDCTYCGFSMSNK--IKRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIR 141 (371)
T ss_pred HHHHcCCEEEEEeceEEcccccCcCCcCCCCCCCC--CccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHH
Confidence 3466899888 678889999999999998865332 23478999999999999999999999999999877655 45
Q ss_pred HHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhc---CCCHHHHHHHHHHHHHcCCCc
Q 015808 152 EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAIEVGYNP 228 (400)
Q Consensus 152 ~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~~~g~~~ 228 (400)
++++.+++. +..+.+.++. +..+.+..|+++|++.+++++++.+++.|..++. ..+|+.++++++.+.++|+..
T Consensus 142 ~~i~~Ik~~--~p~i~i~~g~-lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~ 218 (371)
T PRK09240 142 RALPIAREY--FSSVSIEVQP-LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRK 218 (371)
T ss_pred HHHHHHHHh--CCCceeccCC-CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 666666543 2235565543 4467789999999999999999999999999973 346999999999999999932
Q ss_pred EEEEEEEecCCChhHHHHHHHHHHhCCC-------eEEEEeeecCCCCCCcccCCCCHHHHHHHHHHh
Q 015808 229 VKVNCVVMRGFNDDEICDFVELTRDRPI-------NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKK 289 (400)
Q Consensus 229 v~i~~~v~~~~n~~el~~l~~~~~~~gv-------~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~ 289 (400)
+.+...+.-|...++..+++..++.+++ .+.++.++|..+ +|.....++..++++.+...
T Consensus 219 v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~ 285 (371)
T PRK09240 219 IGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAF 285 (371)
T ss_pred eceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHH
Confidence 4444443333344556666665555443 577889999987 88888888998888887653
No 48
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.80 E-value=2.2e-18 Score=156.57 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=104.4
Q ss_pred cCcccCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEE
Q 015808 91 LTERCNLRCHYCMPPEGVDLTP--KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAM 168 (400)
Q Consensus 91 iT~~CNl~C~yC~~~~~~~~~~--~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i 168 (400)
-|.+||++|.||+......... ....++.+++.+.++.+...++..|.|+||||||++++.++++++++. |+ .+.|
T Consensus 28 R~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~-g~-~v~l 105 (238)
T TIGR03365 28 RTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAK-GY-RFAL 105 (238)
T ss_pred EeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHC-CC-CEEE
Confidence 3589999999999765332111 223589999999998877777889999999999999999999999985 88 7999
Q ss_pred EecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecC
Q 015808 169 TTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRG 238 (400)
Q Consensus 169 ~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~ 238 (400)
.|||+++.+. +. .++.+.+|++++++.. .+.|+...+.++.+.+ +. .+.+.+|+...
T Consensus 106 eTNGtl~~~~---l~--~~d~v~vs~K~~~sg~------~~~~~~~~~~ik~l~~-~~-~~~vK~Vv~~~ 162 (238)
T TIGR03365 106 ETQGSVWQDW---FR--DLDDLTLSPKPPSSGM------ETDWQALDDCIERLDD-GP-QTSLKVVVFDD 162 (238)
T ss_pred ECCCCCcHHH---Hh--hCCEEEEeCCCCCCCC------CCcHHHHHHHHHHhhh-cC-ceEEEEEECCc
Confidence 9999998652 22 2568999999875421 1248888888888887 56 89999998753
No 49
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.79 E-value=1.2e-17 Score=158.40 Aligned_cols=182 Identities=23% Similarity=0.322 Sum_probs=143.3
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC------CCCEEEEE-CCCccchhh-HHHHHHH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTS------GVDKIRLT-GGEPTVRKD-IEEACFH 156 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~------g~~~i~~~-GGEPll~~~-l~~~i~~ 156 (400)
..+.+.--.+|+++|.||..+.. ...+.++.+++...+..+... .+..|+|. |||||++++ +.++++.
T Consensus 110 ~t~CvSsQvGC~~~C~FCatg~~----g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL~N~d~v~~~l~~ 185 (356)
T PRK14462 110 YTVCVSSQVGCKVGCAFCLTAKG----GFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPLDNLDNVSKAIKI 185 (356)
T ss_pred ceEeeeccccCCCCCccCCCCCC----CCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCcccccCHHHHHHHHHH
Confidence 45777777899999999977532 234679988888876544331 24578998 599999988 5799999
Q ss_pred hhhcCCC----ceEEEEecCcchhhhHHHHHHcCC-CeEEEecCCCCHHHHHHhhcCCC---HHHHHHHHHHHH-HcCCC
Q 015808 157 LSKLKGL----KTLAMTTNGLTLARKLPKLKESGL-TSVNISLDTLVPAKFEFLTRRKG---HEKVMESINAAI-EVGYN 227 (400)
Q Consensus 157 ~~~~~g~----~~~~i~TNG~ll~~~~~~l~~~g~-~~i~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~l~-~~g~~ 227 (400)
+++..|+ .++.|.|.|.. +.+.+|.+..+ ..+.|||.+++++.++++.+... .+.++++++.+. +.+.
T Consensus 186 l~~~~Gl~~~~r~itVsTsG~~--~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~- 262 (356)
T PRK14462 186 FSENDGLAISPRRQTISTSGLA--SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRK- 262 (356)
T ss_pred hcCccCCCcCCCceEEECCCCh--HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCC-
Confidence 9885465 25699999955 56777776654 46889999999999999988654 599999998655 6677
Q ss_pred cEEEEEEEecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCCCCCcc
Q 015808 228 PVKVNCVVMRGFND--DEICDFVELTRDRPINIRFIEFMPFDGNVWNV 273 (400)
Q Consensus 228 ~v~i~~~v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~~ 273 (400)
++.+.+++++|+|+ +++.+++++++.+++.+..++|.|+++..+..
T Consensus 263 ~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ 310 (356)
T PRK14462 263 RVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFER 310 (356)
T ss_pred eEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCC
Confidence 99999999999987 67999999999988888888888877666644
No 50
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.79 E-value=2.4e-17 Score=156.66 Aligned_cols=181 Identities=16% Similarity=0.277 Sum_probs=137.4
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-C--CCCE-EEEECCCccchhh-HHHHHHHhhh
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-S--GVDK-IRLTGGEPTVRKD-IEEACFHLSK 159 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-~--g~~~-i~~~GGEPll~~~-l~~~i~~~~~ 159 (400)
..+.+....+|+++|.||..... ...+.++.+++...+..... + .+.. |.++|||||++++ +.++++.+++
T Consensus 101 ~t~cvSsqvGC~~~C~FC~tg~~----G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLln~d~v~~~l~~l~~ 176 (342)
T PRK14454 101 NSICVSTQVGCRMGCKFCASTIG----GMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLDNYENVMKFLKIVNS 176 (342)
T ss_pred CEEEEEcCCCCCCcCCcCCCCCC----CCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhcCHHHHHHHHHHHhc
Confidence 35788889999999999976431 33457999999887765543 1 2445 5567899999998 6899999987
Q ss_pred cCCC----ceEEEEecCcchhhhHHHHHHcCC-CeEEEecCCCCHHHHHHhhcCCC---HHHHHHHHHH-HHHcCCCcEE
Q 015808 160 LKGL----KTLAMTTNGLTLARKLPKLKESGL-TSVNISLDTLVPAKFEFLTRRKG---HEKVMESINA-AIEVGYNPVK 230 (400)
Q Consensus 160 ~~g~----~~~~i~TNG~ll~~~~~~l~~~g~-~~i~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~-l~~~g~~~v~ 230 (400)
..|+ .++.|.|+|.. +.+..+.+.++ ..+.+||++++++.++++.+... .+.+++.++. +.+.|. ++.
T Consensus 177 ~~gi~~~~r~itvsTsG~~--p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~-rv~ 253 (342)
T PRK14454 177 PYGLNIGQRHITLSTCGIV--PKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNR-RIT 253 (342)
T ss_pred ccccCcCCCceEEECcCCh--hHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCC-EEE
Confidence 4355 25899999964 34667776532 35899999999999999998643 6777777765 456677 899
Q ss_pred EEEEEecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCCCCCc
Q 015808 231 VNCVVMRGFND--DEICDFVELTRDRPINIRFIEFMPFDGNVWN 272 (400)
Q Consensus 231 i~~~v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~ 272 (400)
+++++++|+|+ +++.++.++++.+.+.+..++|.|.+...+.
T Consensus 254 iey~LI~gvNDs~eda~~La~llk~l~~~VnLiPyn~~~~~~~~ 297 (342)
T PRK14454 254 FEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIPVNEVKENGFK 297 (342)
T ss_pred EEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEecCCCCCCCCC
Confidence 99999999987 5799999999987667777777776655443
No 51
>PRK15108 biotin synthase; Provisional
Probab=99.78 E-value=6.7e-17 Score=154.51 Aligned_cols=207 Identities=16% Similarity=0.234 Sum_probs=161.1
Q ss_pred hhhcCCC-cc-EEEEEc-CcccCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEC-C-Cccch--h
Q 015808 77 IDSFGRM-HT-YLRISL-TERCNLRCHYCMPPEGVD-LTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG-G-EPTVR--K 148 (400)
Q Consensus 77 ~~~~~~~-~~-~l~i~i-T~~CNl~C~yC~~~~~~~-~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G-G-EPll~--~ 148 (400)
.+.|+.. +. .-.+.+ |+.||.+|.||....... .......++.|++.+.+..+.+.|+..|.+.+ | +|... .
T Consensus 32 ~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e 111 (345)
T PRK15108 32 RQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMP 111 (345)
T ss_pred HHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHH
Confidence 3446643 22 223444 999999999998764221 11234569999999999999999999998865 4 67543 4
Q ss_pred hHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCc
Q 015808 149 DIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNP 228 (400)
Q Consensus 149 ~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~ 228 (400)
.+.++++.+++. ++ .+ +.|||.+..+.+..|+++|++.+++++|+ +++.|..++..++|+..++.++.+.+.|+ .
T Consensus 112 ~i~~~i~~ik~~-~i-~v-~~s~G~ls~e~l~~LkeAGld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~-~ 186 (345)
T PRK15108 112 YLEQMVQGVKAM-GL-ET-CMTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGI-K 186 (345)
T ss_pred HHHHHHHHHHhC-CC-EE-EEeCCcCCHHHHHHHHHcCCCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCC-c
Confidence 478888888864 77 45 46899888888999999999999999999 79999999888889999999999999999 8
Q ss_pred EEEEEEEecCCChhHHHHHHHHHHhCCC--e-EEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 015808 229 VKVNCVVMRGFNDDEICDFVELTRDRPI--N-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 229 v~i~~~v~~~~n~~el~~l~~~~~~~gv--~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 288 (400)
+.....+..|++.+++.+++..+++++. + +.+..+.|..++++......+..+.++.+.-
T Consensus 187 v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi 249 (345)
T PRK15108 187 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAV 249 (345)
T ss_pred eeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 8888888778899999999999998833 2 3444567778888776666777777777654
No 52
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.78 E-value=1.4e-16 Score=150.42 Aligned_cols=204 Identities=18% Similarity=0.258 Sum_probs=153.1
Q ss_pred CCCccE-EEEEc-CcccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHhCCCCEEEE--ECCCccchh---hHHH
Q 015808 81 GRMHTY-LRISL-TERCNLRCHYCMPPEGVDL-TPKPQLLSLNEILRLAYLFVTSGVDKIRL--TGGEPTVRK---DIEE 152 (400)
Q Consensus 81 ~~~~~~-l~i~i-T~~CNl~C~yC~~~~~~~~-~~~~~~~s~e~i~~ii~~~~~~g~~~i~~--~GGEPll~~---~l~~ 152 (400)
++.+.+ ..+.+ |++||++|.||........ ......++.+++.+.++.+.+.|+..+.+ +|++|.... .+.+
T Consensus 23 ~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~ 102 (296)
T TIGR00433 23 PRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEA 102 (296)
T ss_pred CCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHH
Confidence 554432 33555 9999999999998654311 12345688999999888888889888654 356666432 2344
Q ss_pred HHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEE
Q 015808 153 ACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN 232 (400)
Q Consensus 153 ~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~ 232 (400)
+.+.+++ .++ .+. .++|.+-.+.++.|+++|++.|.+++| .+++.|+.+++..+++.++++++.++++|+ .+...
T Consensus 103 i~~~~~~-~~i-~~~-~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi-~v~~~ 177 (296)
T TIGR00433 103 MVQIVEE-MGL-KTC-ATLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGL-KVCSG 177 (296)
T ss_pred HHHHHHh-CCC-eEE-ecCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCC-EEEEe
Confidence 4444444 366 454 355654467779999999999999999 589999999987789999999999999999 88888
Q ss_pred EEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHHHHHHHHh
Q 015808 233 CVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKK 289 (400)
Q Consensus 233 ~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~ 289 (400)
+++..+.+.+++.++++++.+.+++ +.+..+.|..++++......+.++.++.+...
T Consensus 178 ~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~ 235 (296)
T TIGR00433 178 GIFGLGETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALA 235 (296)
T ss_pred EEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHH
Confidence 7775577888999999999999886 66778899988888776667777777666543
No 53
>PRK06256 biotin synthase; Validated
Probab=99.77 E-value=6.5e-17 Score=155.24 Aligned_cols=205 Identities=17% Similarity=0.243 Sum_probs=158.1
Q ss_pred hcCCCcc--EEEEEcCcccCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhCCCCEEEEE-CC-Cccch--hhHH
Q 015808 79 SFGRMHT--YLRISLTERCNLRCHYCMPPEGVDLT-PKPQLLSLNEILRLAYLFVTSGVDKIRLT-GG-EPTVR--KDIE 151 (400)
Q Consensus 79 ~~~~~~~--~l~i~iT~~CNl~C~yC~~~~~~~~~-~~~~~~s~e~i~~ii~~~~~~g~~~i~~~-GG-EPll~--~~l~ 151 (400)
.+|..+. .+....|++||.+|.||+........ .....++.+++.+.++.+.+.|+..+.|. || +|... .++.
T Consensus 50 ~~g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~ 129 (336)
T PRK06256 50 FCGKKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVV 129 (336)
T ss_pred hCCCeEEEEEeeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHH
Confidence 3565543 33333499999999999987543211 12356899999999999999998777664 44 46543 3577
Q ss_pred HHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEE
Q 015808 152 EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV 231 (400)
Q Consensus 152 ~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i 231 (400)
++++.+++..++ .+. .++|.+..+.+..|+++|++.+.+++++ +++.|+.+++..++++++++++.++++|+ .+..
T Consensus 130 e~i~~i~~~~~i-~~~-~~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi-~v~~ 205 (336)
T PRK06256 130 EAVKAIKEETDL-EIC-ACLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI-EPCS 205 (336)
T ss_pred HHHHHHHhcCCC-cEE-ecCCcCCHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC-eecc
Confidence 888888765444 332 3456555677899999999999999999 99999999988889999999999999999 8888
Q ss_pred EEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 015808 232 NCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 287 (400)
Q Consensus 232 ~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 287 (400)
.+++..|.+.+++.++++++++++++ +.+..+.|+.++++......+..++++.+.
T Consensus 206 ~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia 262 (336)
T PRK06256 206 GGIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIA 262 (336)
T ss_pred CeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHH
Confidence 77775578999999999999999885 666678888888887767778888776655
No 54
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.76 E-value=3.6e-17 Score=145.26 Aligned_cols=150 Identities=17% Similarity=0.213 Sum_probs=125.5
Q ss_pred CCCCCCHHHHHHHHHHHHhC---CCCEEEEECCCccchhhH-HHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCC
Q 015808 113 KPQLLSLNEILRLAYLFVTS---GVDKIRLTGGEPTVRKDI-EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 188 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~---g~~~i~~~GGEPll~~~l-~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~ 188 (400)
....++.|++.+.+.+-..+ +-..|+|+||||+++++| .++++.+++. |+ .+.|.|||+...+.+..+... ++
T Consensus 15 ~g~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~-gi-~~~leTnG~~~~~~~~~l~~~-~D 91 (213)
T PRK10076 15 IGRDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLW-GV-SCAIETAGDAPASKLLPLAKL-CD 91 (213)
T ss_pred cCcccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHc-CC-CEEEECCCCCCHHHHHHHHHh-cC
Confidence 35569999998887654332 335899999999999995 7999999885 88 899999999877888888876 89
Q ss_pred eEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCh--hHHHHHHHHHHhCCCe-EEEEeeec
Q 015808 189 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPIN-IRFIEFMP 265 (400)
Q Consensus 189 ~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~--~el~~l~~~~~~~gv~-~~~~~~~p 265 (400)
.+.+.+.+++++.|.+++| .+.+.+++|++.+.+.|. .+.+++++.||.|+ ++++++.+++.++++. +.+..|.|
T Consensus 92 ~~l~DiK~~d~~~~~~~tG-~~~~~il~nl~~l~~~g~-~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llpyh~ 169 (213)
T PRK10076 92 EVLFDLKIMDATQARDVVK-MNLPRVLENLRLLVSEGV-NVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLPFHQ 169 (213)
T ss_pred EEEEeeccCCHHHHHHHHC-CCHHHHHHHHHHHHhCCC-cEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEecCCc
Confidence 9999999999999999998 458999999999999999 99999999999865 6799999999987663 44444555
Q ss_pred CC
Q 015808 266 FD 267 (400)
Q Consensus 266 ~~ 267 (400)
++
T Consensus 170 ~g 171 (213)
T PRK10076 170 YG 171 (213)
T ss_pred cc
Confidence 44
No 55
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.76 E-value=3.9e-17 Score=157.76 Aligned_cols=207 Identities=20% Similarity=0.223 Sum_probs=153.0
Q ss_pred hhhcCCCcc-EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch--hh-HHH
Q 015808 77 IDSFGRMHT-YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR--KD-IEE 152 (400)
Q Consensus 77 ~~~~~~~~~-~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~--~~-l~~ 152 (400)
.+.+|+.+. +..+++|+.||.+|.||....... .....|+.|++.+.++.+.+.|+..|.++|||+... .+ +.+
T Consensus 64 ~~~~G~~v~l~~~i~~Tn~C~~~C~yC~~s~~~~--~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~e 141 (366)
T TIGR02351 64 RKRFGNTISLFTPLYLSNYCSNKCVYCGFSMSNK--IKRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAE 141 (366)
T ss_pred HHHcCCEEEEEeeeeECccccCCCCcCCCCCCCC--CccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHH
Confidence 456788877 667889999999999999865332 233678999999999999999999999999885443 33 678
Q ss_pred HHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhh---cCCCHHHHHHHHHHHHHcCCCcE
Q 015808 153 ACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLT---RRKGHEKVMESINAAIEVGYNPV 229 (400)
Q Consensus 153 ~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir---~~~~~~~v~~~i~~l~~~g~~~v 229 (400)
+++.+++... .+.+..+ .+-.+.+..|+++|++.+++++++.+++.|..++ ...+|+..+++++.++++|+..+
T Consensus 142 ii~~Ik~~~p--~i~Iei~-~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 218 (366)
T TIGR02351 142 AIKLAREYFS--SLAIEVQ-PLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKI 218 (366)
T ss_pred HHHHHHHhCC--ccccccc-cCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 8888876421 2233333 2345788999999999999999999999999997 33469999999999999999336
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhC-------CCeEEEEeeecCCCCCCcccCCCCHHHHHHHHHHh
Q 015808 230 KVNCVVMRGFNDDEICDFVELTRDR-------PINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKK 289 (400)
Q Consensus 230 ~i~~~v~~~~n~~el~~l~~~~~~~-------gv~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~ 289 (400)
.+...+.-+....+..+++..++.+ ++.+.++.++|..+ ++.....++..++++.+...
T Consensus 219 ~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~ 284 (366)
T TIGR02351 219 GIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICAY 284 (366)
T ss_pred ceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHHH
Confidence 6655543332333444433333332 24677888999987 88877888888888777653
No 56
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=99.75 E-value=9e-18 Score=136.93 Aligned_cols=126 Identities=40% Similarity=0.799 Sum_probs=89.8
Q ss_pred CeEEEEeeecCC-CCCCcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeEEeCCCCceEEEEcCCCcCcCCCCCeEE
Q 015808 256 INIRFIEFMPFD-GNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLR 334 (400)
Q Consensus 256 v~~~~~~~~p~~-~~~~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~ 334 (400)
+.++||++||++ +..|.....++.+++++.+.+.+.... .......++.+|.+++..|.++++++++..||..||++.
T Consensus 1 i~vRFIElMP~g~~~~~~~~~~~~~~ei~~~l~~~~~~~~-~~~~~~~pa~~y~~~g~~g~vG~I~~~s~~FC~~CNRiR 79 (128)
T PF06463_consen 1 IDVRFIELMPIGEGNNWFEEEFVPAQEILERLEERYELLP-SEKRPNGPARYYRIPGGKGRVGFISPVSNPFCSSCNRIR 79 (128)
T ss_dssp -EEEEEE---B-TTSSB-TTTB--HHHHHHHHHHHS-EEE-E--SST-SSEEEEETTT--EEEEE-TTTS--GGG--EEE
T ss_pred CeEEEEEeeecCCCCCchhhcCcCHHHHHHHHHHhCCccc-cccccCCcceEEEECCCCcEEEEEeCCCCCCCCcCCEEE
Confidence 468999999998 566878889999999999999986443 334458899999999999999999999999999999999
Q ss_pred EccCCeEEeccCCCCCCCchHHhhcCCCHHHHHHHHHHHHHhchhhhc
Q 015808 335 LLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHA 382 (400)
Q Consensus 335 I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~~~ 382 (400)
|++||+++||++.+.+++|.+.++++..++.|.+.+..|+.+|+.+|.
T Consensus 80 lTsdG~l~~CL~~~~~idl~~~lr~~~~~~~l~~~i~~ai~~Kp~~h~ 127 (128)
T PF06463_consen 80 LTSDGKLKPCLFSNDGIDLRPLLRSGASDEELKEAIREAIARKPPRHH 127 (128)
T ss_dssp E-TTSEEESSSS-SS-EEHHHHHHTT--HHHHHHHHHHHHHT----HH
T ss_pred EccCccEEEcccCCCCcChhHHhhCCCCHHHHHHHHHHHHHChhhhcC
Confidence 999999999999999999999999998899999999999999999995
No 57
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.75 E-value=2.2e-16 Score=150.92 Aligned_cols=181 Identities=22% Similarity=0.358 Sum_probs=135.1
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----------CCCCEEEEEC-CCccchhh-HHH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT----------SGVDKIRLTG-GEPTVRKD-IEE 152 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~----------~g~~~i~~~G-GEPll~~~-l~~ 152 (400)
.++.|...-+|+++|.||..+.. .....++.+++...+..+.. .++.+|.|.| ||||++.+ +.+
T Consensus 103 ~t~CvSsQvGC~~~C~FC~t~~~----g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~N~d~v~~ 178 (372)
T PRK11194 103 ATLCVSSQVGCALECKFCSTAQQ----GFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLNNVVP 178 (372)
T ss_pred eeEEEecCCCCCCcCCCCCCCCC----CCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCccccCHHHHHH
Confidence 45667767899999999987632 33566898888776544332 1267788877 99999988 468
Q ss_pred HHHHhhhcCCC----ceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCC---HHHHHHHHHHHHHc-
Q 015808 153 ACFHLSKLKGL----KTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG---HEKVMESINAAIEV- 224 (400)
Q Consensus 153 ~i~~~~~~~g~----~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~l~~~- 224 (400)
+++.+.+..|+ .++.|.|+|.. +.+.+|.+..-..+.+|+.+++++.++++.+... .+.++++++...+.
T Consensus 179 al~~l~~~~g~~i~~r~itVsTsG~~--~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~ 256 (372)
T PRK11194 179 AMEIMLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKS 256 (372)
T ss_pred HHHHHhhhhccCcCCCeEEEECCCCc--hHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhc
Confidence 88888754442 27899999944 4577777654337889999999999999998643 57788777666543
Q ss_pred C--CCcEEEEEEEecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCCCCC
Q 015808 225 G--YNPVKVNCVVMRGFND--DEICDFVELTRDRPINIRFIEFMPFDGNVW 271 (400)
Q Consensus 225 g--~~~v~i~~~v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~~~~ 271 (400)
+ .+++.+++++++|+|+ +++.+++++++.++..+..++|.|+++..+
T Consensus 257 ~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN~~~~~~~ 307 (372)
T PRK11194 257 NANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPY 307 (372)
T ss_pred ccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCCCCCCCCC
Confidence 3 1389999999999988 579999999998877777777777766555
No 58
>PLN02389 biotin synthase
Probab=99.75 E-value=3.2e-16 Score=150.89 Aligned_cols=196 Identities=21% Similarity=0.308 Sum_probs=158.5
Q ss_pred EEEc-CcccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHhCCCCEEEEE------CCCccchhhHHHHHHHhhh
Q 015808 88 RISL-TERCNLRCHYCMPPEGVDL-TPKPQLLSLNEILRLAYLFVTSGVDKIRLT------GGEPTVRKDIEEACFHLSK 159 (400)
Q Consensus 88 ~i~i-T~~CNl~C~yC~~~~~~~~-~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~------GGEPll~~~l~~~i~~~~~ 159 (400)
.+++ |+.|+.+|.||.+...... .+....++.|++.+.++++.+.|+..|.+. +|||+....+.++++.+++
T Consensus 85 i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~ 164 (379)
T PLN02389 85 LLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG 164 (379)
T ss_pred EEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc
Confidence 3555 8999999999998643211 122456999999999999999999998874 3777766778899999986
Q ss_pred cCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC
Q 015808 160 LKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGF 239 (400)
Q Consensus 160 ~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~ 239 (400)
.++ .+. .|+|.+..+.+..|+++|++.+.+++|+ .++.|+++....+|+..+++++.+++.|+ .+....++.-|.
T Consensus 165 -~~l-~i~-~s~G~l~~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi-~v~sg~IiGlgE 239 (379)
T PLN02389 165 -MGM-EVC-CTLGMLEKEQAAQLKEAGLTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREAGI-SVCSGGIIGLGE 239 (379)
T ss_pred -CCc-EEE-ECCCCCCHHHHHHHHHcCCCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCC-eEeEEEEECCCC
Confidence 366 454 6889777788999999999999999999 58899999887889999999999999999 888888876677
Q ss_pred ChhHHHHHHHHHHhCC--C-eEEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 015808 240 NDDEICDFVELTRDRP--I-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 240 n~~el~~l~~~~~~~g--v-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 288 (400)
+.+++.+++.++++++ + .+.+..+.|+.++++......+..+.++.+.-
T Consensus 240 t~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi 291 (379)
T PLN02389 240 AEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIAT 291 (379)
T ss_pred CHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHH
Confidence 8888888888888874 3 35666788998998877677788777777654
No 59
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.73 E-value=7.5e-16 Score=149.67 Aligned_cols=181 Identities=15% Similarity=0.233 Sum_probs=140.8
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHh-------CCCCEEEEECCCccch--hhHHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNE-ILRLAYLFVT-------SGVDKIRLTGGEPTVR--KDIEEACF 155 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~-i~~ii~~~~~-------~g~~~i~~~GGEPll~--~~l~~~i~ 155 (400)
||.| ..|+.+|.||...... .....+.+. +.++++++.. .++..|.|.||+|++. .++.++++
T Consensus 10 YiHi---PFC~~~C~yC~f~~~~----~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~~~l~~ll~ 82 (378)
T PRK05660 10 YIHI---PWCVQKCPYCDFNSHA----LKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLD 82 (378)
T ss_pred EEEe---CCccCcCCCCCCeecC----CCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCHHHHHHHHH
Confidence 4555 5699999999876432 122344454 5556665543 4578999999999984 56899999
Q ss_pred HhhhcCCC---ceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEE
Q 015808 156 HLSKLKGL---KTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV 231 (400)
Q Consensus 156 ~~~~~~g~---~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i 231 (400)
.+++..++ ..+++.||+..++ +.+..|+++|++.|+|++++.+++.++.+++..+++.++++++.+++.|+..+.+
T Consensus 83 ~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~ 162 (378)
T PRK05660 83 GVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNL 162 (378)
T ss_pred HHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 99874322 1799999987774 6779999999999999999999999999999888999999999999999944455
Q ss_pred EEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc
Q 015808 232 NCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV 273 (400)
Q Consensus 232 ~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~ 273 (400)
...+ .+++|.+++.+.++++.+++++ +.+..+.+..++.+..
T Consensus 163 dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~ 206 (378)
T PRK05660 163 DLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGS 206 (378)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccc
Confidence 5444 4778999999999999999884 6677777777765543
No 60
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.72 E-value=3e-16 Score=151.88 Aligned_cols=183 Identities=14% Similarity=0.262 Sum_probs=135.6
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCC---CCEEEEECCCccch--hhHHHHHHHhhhc
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSG---VDKIRLTGGEPTVR--KDIEEACFHLSKL 160 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g---~~~i~~~GGEPll~--~~l~~~i~~~~~~ 160 (400)
||.| ..|+.+|.||+.............+....++++...+...+ +..|.|.||+|++. +++.++++.+++.
T Consensus 4 YiHi---PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~ 80 (360)
T TIGR00539 4 YIHI---PFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSVEAFERLFESIYQH 80 (360)
T ss_pred EEEe---CCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCHHHHHHHHHHHHHh
Confidence 4555 56999999999865321100001111222222222223333 78999999999874 5688888777643
Q ss_pred C----CCceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q 015808 161 K----GLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV 235 (400)
Q Consensus 161 ~----g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v 235 (400)
. +. .+++.||+..++ +.+..|.+.|++.|.|++++.++++++.+.+..++++++++++.++++|+..+.+...+
T Consensus 81 ~~~~~~~-eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 81 ASLSDDC-EITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred CCCCCCC-EEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
Confidence 2 33 789999998885 66789999999999999999999999999766779999999999999999446666555
Q ss_pred -ecCCChhHHHHHHHHHHhCCC-eEEEEeeecCCCCCCc
Q 015808 236 -MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVWN 272 (400)
Q Consensus 236 -~~~~n~~el~~l~~~~~~~gv-~~~~~~~~p~~~~~~~ 272 (400)
.+++|.+++.+.++++.++++ .+.+..+.|..++++.
T Consensus 160 GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~ 198 (360)
T TIGR00539 160 GLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFE 198 (360)
T ss_pred CCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhh
Confidence 478899999999999999998 4777788888876654
No 61
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.72 E-value=1.7e-16 Score=130.26 Aligned_cols=158 Identities=23% Similarity=0.303 Sum_probs=118.9
Q ss_pred CcccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH-HhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEE
Q 015808 92 TERCNLRCHYCMPPEGVDL-TPKPQLLSLNEILRLAYLF-VTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAM 168 (400)
Q Consensus 92 T~~CNl~C~yC~~~~~~~~-~~~~~~~s~e~i~~ii~~~-~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i 168 (400)
|-+||+.|.||+....... ......++++++..-+.++ ++.|.+.|.++||||+|-++ +.++|+.+.+. .+.+
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~l~~EHvlevIeLl~~~----tFvl 123 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPILGREHVLEVIELLVNN----TFVL 123 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCccccHHHHHHHHHhccCc----eEEE
Confidence 5699999999997543221 3456678887776655444 56889999999999999877 78888888653 6889
Q ss_pred EecCcch--hhhH-HHHHHcCCCeEEEecCCCCHHHHHHhhcCCC--HHHHHHHHHHHHHcCCCcEEEEEEEecCCCh-h
Q 015808 169 TTNGLTL--ARKL-PKLKESGLTSVNISLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNCVVMRGFND-D 242 (400)
Q Consensus 169 ~TNG~ll--~~~~-~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~-~ 242 (400)
.|||+++ +..+ +.|...-...|.||+.|.+|+.+.+|++... |...+++++.|.+.|. .+..-.+. ++.. +
T Consensus 124 ETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~-rf~pA~~~--~f~~Ed 200 (228)
T COG5014 124 ETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGH-RFWPAVVY--DFFRED 200 (228)
T ss_pred EeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCc-eeeehhhh--ccchhh
Confidence 9999998 5555 6666533448999999999999999997655 9999999999999998 55444433 3333 4
Q ss_pred HHHHHHHHHHhCCC
Q 015808 243 EICDFVELTRDRPI 256 (400)
Q Consensus 243 el~~l~~~~~~~gv 256 (400)
-..++...+.+.+.
T Consensus 201 ~~k~Lak~Lgehp~ 214 (228)
T COG5014 201 GLKELAKRLGEHPP 214 (228)
T ss_pred hHHHHHHHhccCCC
Confidence 45567777766554
No 62
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.72 E-value=5.5e-16 Score=148.87 Aligned_cols=208 Identities=22% Similarity=0.302 Sum_probs=155.5
Q ss_pred hhcCCCccEE---EEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECC-Cccchhh-HHH
Q 015808 78 DSFGRMHTYL---RISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGG-EPTVRKD-IEE 152 (400)
Q Consensus 78 ~~~~~~~~~l---~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GG-EPll~~~-l~~ 152 (400)
..+|+.+.++ .|.+|+.|+.+|.||........ .....++.|++.+.++++.+.|+..|.|+|| +|.+..+ +.+
T Consensus 29 ~~~g~~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~-~~~y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~ 107 (343)
T TIGR03551 29 DIVGDTVTYVVNRNINFTNVCYGGCGFCAFRKRKGD-ADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLD 107 (343)
T ss_pred HhcCCeEEEEeeeccccccccccCCccCCCccCCCC-CCcccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHH
Confidence 4467777654 58889999999999987653221 2224589999999999999999999999988 6767666 589
Q ss_pred HHHHhhhc-CCCceEEE----------EecCcchhhhHHHHHHcCCCeEE-EecCCCCHHHHHHhhcCC-CHHHHHHHHH
Q 015808 153 ACFHLSKL-KGLKTLAM----------TTNGLTLARKLPKLKESGLTSVN-ISLDTLVPAKFEFLTRRK-GHEKVMESIN 219 (400)
Q Consensus 153 ~i~~~~~~-~g~~~~~i----------~TNG~ll~~~~~~l~~~g~~~i~-iSldg~~~~~~~~ir~~~-~~~~v~~~i~ 219 (400)
+++.+++. .++ .+.. +++|.+..+.++.|+++|++.+. .+.+..+++.++.+...+ +++..++.++
T Consensus 108 i~~~Ik~~~~~i-~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~ 186 (343)
T TIGR03551 108 ILRAVKEEVPGM-HIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIK 186 (343)
T ss_pred HHHHHHHHCCCc-eEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHH
Confidence 99999875 244 3433 25677777889999999999887 456777788888888765 7999999999
Q ss_pred HHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecCC----CCCCcc----cCCCCHHHHHHHHHH
Q 015808 220 AAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFD----GNVWNV----KKLVPYAEMLDTVVK 288 (400)
Q Consensus 220 ~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~----~~~~~~----~~~~~~~e~~~~i~~ 288 (400)
.++++|+ .+.....+..+.+.+++.+.+.++++++.+ ..+..+.|+. ++++.. ....+..+.++.+.-
T Consensus 187 ~a~~~Gi-~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv 263 (343)
T TIGR03551 187 TAHKLGI-PTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAI 263 (343)
T ss_pred HHHHcCC-cccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHH
Confidence 9999999 777777776667889999999999987763 2333444432 555532 134567777776643
No 63
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.71 E-value=1.5e-15 Score=143.14 Aligned_cols=198 Identities=20% Similarity=0.284 Sum_probs=150.4
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-----------------CCCCEEEEEC-CCccc
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-----------------SGVDKIRLTG-GEPTV 146 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-----------------~g~~~i~~~G-GEPll 146 (400)
..+.|+.--+|.+.|.||..+.. .-.+.++..||..-+..+.+ ..+.+|.|.| ||||+
T Consensus 107 ~TlCvSSQvGC~mgC~FCaTG~~----G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~ 182 (371)
T PRK14461 107 ATVCVSTQAGCGMGCVFCATGTL----GLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFA 182 (371)
T ss_pred ceEEEEccCCccCCCCcccCCCC----CcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchh
Confidence 45777777899999999977642 34577898888776554422 1267999999 99999
Q ss_pred hhh-HHHHHHHhhhcCCC----ceEEEEecCcchhhhHHHHHHcCC-CeEEEecCCCCHHHHHHhhcCC---CHHHHHHH
Q 015808 147 RKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKLPKLKESGL-TSVNISLDTLVPAKFEFLTRRK---GHEKVMES 217 (400)
Q Consensus 147 ~~~-l~~~i~~~~~~~g~----~~~~i~TNG~ll~~~~~~l~~~g~-~~i~iSldg~~~~~~~~ir~~~---~~~~v~~~ 217 (400)
+.+ +.+.++.+.+..|+ .+++|+|-| +.+.+.+|.+.++ ..+.|||.+++++..+++.+.. ..+.++++
T Consensus 183 NydnV~~ai~il~d~~g~~is~R~ITVST~G--ivp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a 260 (371)
T PRK14461 183 NYDRWWQAVERLHDPQGFNLGARSMTVSTVG--LVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAA 260 (371)
T ss_pred hHHHHHHHHHHhcCccccCcCCCceEEEeec--chhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHH
Confidence 976 88888888764332 378999999 5567788877542 4899999999999999998744 38999999
Q ss_pred HHHHHHcCCCcEEEEEEEecCCCh--hHHHHHHHHHHhC------CCeEEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 015808 218 INAAIEVGYNPVKVNCVVMRGFND--DEICDFVELTRDR------PINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 218 i~~l~~~g~~~v~i~~~v~~~~n~--~el~~l~~~~~~~------gv~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 288 (400)
++...+..-+.+.+.++++.|+|+ ++..++.++++.. .+.++.|.|.|..+..+.........++.+.+.+
T Consensus 261 ~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~ 339 (371)
T PRK14461 261 TRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERVTTFQRILTD 339 (371)
T ss_pred HHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 998876644489999999999988 6799999999987 6688888888887766665443334444444433
No 64
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=99.70 E-value=3.2e-17 Score=137.05 Aligned_cols=109 Identities=30% Similarity=0.407 Sum_probs=73.2
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccc---hhhHHHHHHHhhhcCCCceEEE
Q 015808 92 TERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV---RKDIEEACFHLSKLKGLKTLAM 168 (400)
Q Consensus 92 T~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll---~~~l~~~i~~~~~~~g~~~~~i 168 (400)
|++||++|.||+...... ......++.+.+.++++.+...++..|.|+|||||+ .+++.++++++++... ..+.+
T Consensus 12 t~~Cnl~C~yC~~~~~~~-~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~-~~~~~ 89 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWK-FKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFP-KKIII 89 (139)
T ss_dssp EC--SB--TT-TTCCCS--TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT--SEEEE
T ss_pred cCcccccCcCcCCcccCc-ccccccccchhhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCC-CCeEE
Confidence 788999999999765432 234556889999999999988999999999999999 5778999999998644 36889
Q ss_pred EecCcchhhhHHHHHHcCCCeEEEecCCCCHHHH
Q 015808 169 TTNGLTLARKLPKLKESGLTSVNISLDTLVPAKF 202 (400)
Q Consensus 169 ~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~ 202 (400)
.|||+.+.+....+....++.+.||+||..+..+
T Consensus 90 ~tng~~~~~~~~~~~~~~~~~~~vsvd~~~~~~~ 123 (139)
T PF13353_consen 90 LTNGYTLDELLDELIEELLDEIDVSVDGPFDENK 123 (139)
T ss_dssp EETT--HHHHHHHHHHHHHHTESEEEE---SSHH
T ss_pred EECCCchhHHHhHHHHhccCccEEEEEEechhhc
Confidence 9999999766543333334456677777554333
No 65
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.70 E-value=5.8e-16 Score=145.96 Aligned_cols=197 Identities=24% Similarity=0.348 Sum_probs=145.7
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEEC-CCccchhh-HHHHHHHhhhcC
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLK 161 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-~g~~~i~~~G-GEPll~~~-l~~~i~~~~~~~ 161 (400)
..+.++...+|++.|.||..+.. .-.+.++.++|...+..+.+ ..+..|+|+| ||||++.+ +.+.++.+.+..
T Consensus 96 ~t~CvSsQvGC~~~C~FC~tg~~----g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl~N~d~vl~ai~~l~~~~ 171 (344)
T PRK14464 96 DGLCVSTQVGCAVGCVFCMTGRS----GLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPAHNLDNVLEAIDLLGTEG 171 (344)
T ss_pred CcEEEEccCCcCCCCCcCcCCCC----CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcccCCHHHHHHHHHHhhchh
Confidence 36888889999999999987642 23456898998887776655 3588999999 99999975 667666665432
Q ss_pred --CCceEEEEecCcchhhhHHHHHHcCC-CeEEEecCCCCHHHHHHhhcCC---CHHHHHHHHHHHHHc-CCCcEEEEEE
Q 015808 162 --GLKTLAMTTNGLTLARKLPKLKESGL-TSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIEV-GYNPVKVNCV 234 (400)
Q Consensus 162 --g~~~~~i~TNG~ll~~~~~~l~~~g~-~~i~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~~-g~~~v~i~~~ 234 (400)
+...+.|+|-| +.+.+.+|.+..+ ..+.+||++++++.++.+.+.. +.+.++++++.+.+. |. .+.+.++
T Consensus 172 ~i~~r~itiST~G--~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~gr-ri~~Eyv 248 (344)
T PRK14464 172 GIGHKNLVFSTVG--DPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGY-PIQYQWT 248 (344)
T ss_pred cCCCceEEEeccc--CchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCC-EEEEEEE
Confidence 23367788888 3355666665433 3577899999999998887644 388899988877654 55 8999999
Q ss_pred EecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 015808 235 VMRGFND--DEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 235 v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 288 (400)
+.+|+|+ +++.++.++++...+.++.+.|.|..+..+.........++.+.+..
T Consensus 249 Ll~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 249 LLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred EeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 9999988 57999999999888888888888887766655443333344444433
No 66
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.70 E-value=1.4e-15 Score=146.24 Aligned_cols=208 Identities=22% Similarity=0.340 Sum_probs=153.3
Q ss_pred hhc-CCCccE---EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECC-Cccchhh-HH
Q 015808 78 DSF-GRMHTY---LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGG-EPTVRKD-IE 151 (400)
Q Consensus 78 ~~~-~~~~~~---l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GG-EPll~~~-l~ 151 (400)
..+ |+.+.+ ..|++|+.|+.+|.||....... ......++.+++.+.++.+.+.|+..|.|+|| +|.+..+ +.
T Consensus 30 ~~~~g~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~-~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~ 108 (340)
T TIGR03699 30 RRHPGNIVTFVVDRNINYTNICVVGCKFCAFYRAPG-HPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYE 108 (340)
T ss_pred HhcCCCeEEEEeecccccchhhccCCccCCcccCCC-CccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHH
Confidence 345 777654 44778999999999997543211 11234689999999999999999999999987 6777666 56
Q ss_pred HHHHHhhhcC-CCceE----------EEEecCcchhhhHHHHHHcCCCeEE-EecCCCCHHHHHHhhcC-CCHHHHHHHH
Q 015808 152 EACFHLSKLK-GLKTL----------AMTTNGLTLARKLPKLKESGLTSVN-ISLDTLVPAKFEFLTRR-KGHEKVMESI 218 (400)
Q Consensus 152 ~~i~~~~~~~-g~~~~----------~i~TNG~ll~~~~~~l~~~g~~~i~-iSldg~~~~~~~~ir~~-~~~~~v~~~i 218 (400)
++++.+++.. ++ .+ ...|||.+..+.+..|+++|++.+. ...+..++++.+.+.+. .++++.++.+
T Consensus 109 ~li~~Ik~~~~~i-~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i 187 (340)
T TIGR03699 109 DLFRAIKARFPHI-HIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVM 187 (340)
T ss_pred HHHHHHHHHCCCc-CCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHH
Confidence 8999998752 23 22 1237888777888999999998776 34566677877777554 4699999999
Q ss_pred HHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecC----CCCCCcccCCCCHHHHHHHHHH
Q 015808 219 NAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPF----DGNVWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 219 ~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~----~~~~~~~~~~~~~~e~~~~i~~ 288 (400)
+.++++|+ ++...+++..|++.+++.+.+.++++++.. ..+..|+|. .++++......+..+.++.+.-
T Consensus 188 ~~a~~~Gi-~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~ 261 (340)
T TIGR03699 188 ETAHKLGL-PTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAI 261 (340)
T ss_pred HHHHHcCC-CccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHH
Confidence 99999999 888888887788999999999999998763 233344442 4666655455677777766554
No 67
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.67 E-value=1.1e-14 Score=144.78 Aligned_cols=184 Identities=17% Similarity=0.283 Sum_probs=145.1
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEC------CCccc-hhhHHHHHHHh
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG------GEPTV-RKDIEEACFHL 157 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G------GEPll-~~~l~~~i~~~ 157 (400)
....|.++.+||++|+||..+... ......+.+++.+.++.+.+.|++.|.|+| |+|+. ++++.++++.+
T Consensus 155 ~~~~i~I~rGC~~~CsfC~~p~~~---G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l 231 (459)
T PRK14338 155 VTVHVPIIYGCNMSCSYCVIPLRR---GRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAV 231 (459)
T ss_pred eEEEEEcccCCCCCCCcCCeeccC---CCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHH
Confidence 356788999999999999876422 234668899999999999999999999998 77764 46789999999
Q ss_pred hhcCCCceEEE-EecCcchhhhH-HHHHHc--CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEE-
Q 015808 158 SKLKGLKTLAM-TTNGLTLARKL-PKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN- 232 (400)
Q Consensus 158 ~~~~g~~~~~i-~TNG~ll~~~~-~~l~~~--g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~- 232 (400)
.+..++..+.+ ++|+..+++.+ ..+.+. ++..+.+++++.++++.+.+++..+.+.+++.++.+++.+. .+.+.
T Consensus 232 ~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p-gi~i~~ 310 (459)
T PRK14338 232 HEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIP-DVSLTT 310 (459)
T ss_pred HhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCC-CCEEEE
Confidence 87556544554 35777776554 566553 47899999999999999999988889999999999999833 33444
Q ss_pred -EEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCc
Q 015808 233 -CVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWN 272 (400)
Q Consensus 233 -~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~ 272 (400)
+.+ .||++.+++.+.++++.+.+++ +.+..|.|..+++..
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~ 353 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAA 353 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhh
Confidence 333 4788999999999999999884 667788888877654
No 68
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.67 E-value=5.3e-15 Score=142.37 Aligned_cols=179 Identities=17% Similarity=0.308 Sum_probs=137.1
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-------CCCCEEEEECCCccc-hhh-HHHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-------SGVDKIRLTGGEPTV-RKD-IEEACFH 156 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-------~g~~~i~~~GGEPll-~~~-l~~~i~~ 156 (400)
||+| ..|+.+|.||...... ....+..+-+.++++++.. .++..|.|.||+|++ .++ +.++++.
T Consensus 4 YiHi---PFC~~~C~yC~f~~~~----~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~ 76 (350)
T PRK08446 4 YIHI---PFCESKCGYCAFNSYE----NKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEI 76 (350)
T ss_pred EEEe---CCccCcCCCCCCcCcC----CCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHH
Confidence 5555 5799999999876531 1223344455555555542 257889999999975 444 6777777
Q ss_pred hhhc--CCCceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 157 LSKL--KGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 157 ~~~~--~g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
+++. .+. .+++.+|+..++ +.++.+.++|+++|+|++++++++..+.+.+..+++.++++++.+++.|+..+.+.+
T Consensus 77 i~~~~~~~~-eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDl 155 (350)
T PRK08446 77 ISPYLSKDC-EITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDL 155 (350)
T ss_pred HHHhcCCCc-eEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 7653 234 789999998775 677999999999999999999999999997777899999999999999994466776
Q ss_pred EE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCc
Q 015808 234 VV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWN 272 (400)
Q Consensus 234 ~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~ 272 (400)
++ .|+++.+++.+.++++.+.+++ +.+..+.+..++++.
T Consensus 156 i~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~ 196 (350)
T PRK08446 156 IYDTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFF 196 (350)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhH
Confidence 65 3788999999999999999884 667777777776654
No 69
>PRK06267 hypothetical protein; Provisional
Probab=99.66 E-value=3.2e-14 Score=136.63 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=158.9
Q ss_pred hhhcCCCcc-EEEEEcCcccC--CCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHH
Q 015808 77 IDSFGRMHT-YLRISLTERCN--LRCHYCMPPEGVDL--TPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIE 151 (400)
Q Consensus 77 ~~~~~~~~~-~l~i~iT~~CN--l~C~yC~~~~~~~~--~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~ 151 (400)
...||+.+. +..++.|+.|| .+|.||........ .+....++.|++.+.++.+.+.|+..+.++||+++...++.
T Consensus 18 ~~~fG~~v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~~~~el~ 97 (350)
T PRK06267 18 EKHHGNIVSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYGYTTEEIN 97 (350)
T ss_pred HHHcCCeEEEEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Confidence 355777655 34567899999 77999987653211 12334679999999999999999988889999997777799
Q ss_pred HHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEE
Q 015808 152 EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV 231 (400)
Q Consensus 152 ~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i 231 (400)
++++.++...+. .+.+.. |.+..+.+..+. +..|..++++.+++.|..+++.++++..++.++.++++|+ .+..
T Consensus 98 ~i~e~I~~~~~~-~~~~s~-G~~d~~~~~~~~---l~Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi-~v~~ 171 (350)
T PRK06267 98 DIAEMIAYIQGC-KQYLNV-GIIDFLNINLNE---IEGVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGL-KTGI 171 (350)
T ss_pred HHHHHHHHhhCC-ceEeec-ccCCHHHHhhcc---ccCceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCC-eeee
Confidence 999998776444 344432 322223333333 3345678999999999999988889999999999999999 8888
Q ss_pred EEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHHHHHHHHh
Q 015808 232 NCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKK 289 (400)
Q Consensus 232 ~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~ 289 (400)
.+++..|.+.+++.++++++.+++++ +.+..+.|..++++......+..+.++.+.-.
T Consensus 172 g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~ 230 (350)
T PRK06267 172 TIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSV 230 (350)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHH
Confidence 88886678999999999999999985 67888999999888777778888887776543
No 70
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=99.65 E-value=1.4e-14 Score=134.75 Aligned_cols=197 Identities=21% Similarity=0.350 Sum_probs=150.8
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-C------CCCEEEEEC-CCccchhh-HHHHHH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-S------GVDKIRLTG-GEPTVRKD-IEEACF 155 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-~------g~~~i~~~G-GEPll~~~-l~~~i~ 155 (400)
..+.+..--+|++.|+||..+.+ ...+.++..+|..-+..+.+ . .+.+|.|.| ||||++.+ +..+++
T Consensus 101 ~tlCVSsQvGC~~~C~FCaTg~~----G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~ 176 (349)
T COG0820 101 NTLCVSSQVGCPVGCTFCATGQG----GLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALE 176 (349)
T ss_pred ceEEEecCCCcCCCCCeeccccc----cceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHH
Confidence 45777777899999999988753 34567998888887766542 2 256899999 99999977 677888
Q ss_pred HhhhcCCC----ceEEEEecCcchhhhHHHHHHcC-CCeEEEecCCCCHHHHHHhhcCCC---HHHHHHHHHHHHHcCCC
Q 015808 156 HLSKLKGL----KTLAMTTNGLTLARKLPKLKESG-LTSVNISLDTLVPAKFEFLTRRKG---HEKVMESINAAIEVGYN 227 (400)
Q Consensus 156 ~~~~~~g~----~~~~i~TNG~ll~~~~~~l~~~g-~~~i~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~l~~~g~~ 227 (400)
.+....|+ +.++++|+| +...+.++.+.. -..+.|||++++++..+.+.+... .+.++++++...+..-.
T Consensus 177 i~~~~~G~~ls~R~iTvSTsG--i~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~ 254 (349)
T COG0820 177 IINDDEGLGLSKRRITVSTSG--IVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGR 254 (349)
T ss_pred hhcCcccccccceEEEEecCC--CchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCc
Confidence 77754443 368999999 556677777432 238999999999999888875543 89999999998876444
Q ss_pred cEEEEEEEecCCCh--hHHHHHHHHHHhCCCeEEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 015808 228 PVKVNCVVMRGFND--DEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 287 (400)
Q Consensus 228 ~v~i~~~v~~~~n~--~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 287 (400)
.|.+.+++.+++|+ ++..+++++++.....++.|+|.|..+..+.........++.+.+.
T Consensus 255 rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~ 316 (349)
T COG0820 255 RVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILK 316 (349)
T ss_pred eEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHH
Confidence 89999999999988 5788999999988778889999998877766554444555555554
No 71
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=99.65 E-value=3.1e-16 Score=127.40 Aligned_cols=105 Identities=26% Similarity=0.431 Sum_probs=55.5
Q ss_pred EcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCC--CEEEEECCCccch---hhHHHHHHHhhhcC-CC
Q 015808 90 SLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGV--DKIRLTGGEPTVR---KDIEEACFHLSKLK-GL 163 (400)
Q Consensus 90 ~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~--~~i~~~GGEPll~---~~l~~~i~~~~~~~-g~ 163 (400)
.+|..||++|.||+....... .....++.+++.++++.+...+. ..|.|+||||||+ +++.++++++++.. .+
T Consensus 3 ~~t~~Cnl~C~~C~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 3 VRTSGCNLRCSYCYNKSSWSP-KKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLNPEDLIELIEYLKERGPEI 81 (119)
T ss_dssp ---S--S---TTTS-TTTSST--GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGSTTHHHHHHHHCTSTT-----
T ss_pred CccCCcCCCCccCCcCccCCC-ccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccccCHHHHHHHHHHHHhhCCCc
Confidence 458999999999997653322 44567899999999998877765 5799999999965 45889999988852 15
Q ss_pred ceEEEEecCcchhhhHH----HHHHc-CCCeEEEecCC
Q 015808 164 KTLAMTTNGLTLARKLP----KLKES-GLTSVNISLDT 196 (400)
Q Consensus 164 ~~~~i~TNG~ll~~~~~----~l~~~-g~~~i~iSldg 196 (400)
.+.+.|||++..+... .+... ....+.||+||
T Consensus 82 -~i~i~TNg~~~~~~~~~~~~~~~~~ls~k~~~~s~~g 118 (119)
T PF13394_consen 82 -KIRIETNGTLPTEEKIEDWKNLEECLSIKYIDVSVDG 118 (119)
T ss_dssp -EEEEEE-STTHHHHHH---------------------
T ss_pred -eEEEEeCCeeccccchhhccccccccccccccccccC
Confidence 7999999999843321 11111 11266688887
No 72
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.64 E-value=1.2e-14 Score=139.43 Aligned_cols=194 Identities=25% Similarity=0.307 Sum_probs=137.5
Q ss_pred EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCc-cch-------------hhHHH
Q 015808 87 LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEP-TVR-------------KDIEE 152 (400)
Q Consensus 87 l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEP-ll~-------------~~l~~ 152 (400)
..|++|+.||.+|.||...... .....++.|++.+.++++.+.|+..|.|+|||+ .+. +++.+
T Consensus 14 ~~i~~Tn~C~~~C~fC~~~~~~---~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~ 90 (336)
T PRK06245 14 VFIPLTYECRNRCGYCTFRRDP---GQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILE 90 (336)
T ss_pred eeeeccccccCCCccCCCcCCC---CccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHH
Confidence 5699999999999999876533 223489999999999999999999999999997 433 23344
Q ss_pred HHHHhhhc---CCCceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhh---cCCCHHHHHHHHHHHHHcC
Q 015808 153 ACFHLSKL---KGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLT---RRKGHEKVMESINAAIEVG 225 (400)
Q Consensus 153 ~i~~~~~~---~g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir---~~~~~~~v~~~i~~l~~~g 225 (400)
+++.+.+. .++ ...+|+..++ +.+..|.+.+. .+.+++++.++..++.++ +...+++.++.++.+.+.|
T Consensus 91 ~i~~i~~~~~~~g~---~~~~~~~~lt~e~i~~Lk~ag~-~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~G 166 (336)
T PRK06245 91 YLYDLCELALEEGL---LPHTNAGILTREEMEKLKEVNA-SMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLK 166 (336)
T ss_pred HHHHHHHHHhhcCC---CccccCCCCCHHHHHHHHHhCC-CCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcC
Confidence 44333221 133 3356766664 66788888776 478889998888877663 3345899999999999999
Q ss_pred CCcEEEEEEEecCCChhHHHHHHHHHHhCC-----C-eEEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 015808 226 YNPVKVNCVVMRGFNDDEICDFVELTRDRP-----I-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 226 ~~~v~i~~~v~~~~n~~el~~l~~~~~~~g-----v-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 288 (400)
+ ++...+.+..+.+.+++.+.+++++++. + .+....|.|..++++......+.++.++.+..
T Consensus 167 i-~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~ 234 (336)
T PRK06245 167 I-PFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVAL 234 (336)
T ss_pred C-ceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHH
Confidence 9 7765565555678888877666666542 3 35566777877766654445566666665443
No 73
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.64 E-value=3.2e-14 Score=141.70 Aligned_cols=169 Identities=14% Similarity=0.251 Sum_probs=130.8
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--------hCCCCEEEEECCCccc--hhhHHHHHHHhhhcCC
Q 015808 93 ERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFV--------TSGVDKIRLTGGEPTV--RKDIEEACFHLSKLKG 162 (400)
Q Consensus 93 ~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~--------~~g~~~i~~~GGEPll--~~~l~~~i~~~~~~~g 162 (400)
..|+.+|.||...... ........+-+.++++++. ..++..|.|.||+|++ .+++.++++.+++..+
T Consensus 57 PFC~~~C~yC~~~~~~---~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~ 133 (453)
T PRK09249 57 PFCRSLCYYCGCNKII---TRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLREHFN 133 (453)
T ss_pred CCccccCCCCCCcccC---CCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHHhCC
Confidence 6699999999875432 1122233344455555544 2347789999999997 3568999999886532
Q ss_pred C---ceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ec
Q 015808 163 L---KTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MR 237 (400)
Q Consensus 163 ~---~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v-~~ 237 (400)
+ ..+++.||+..++ +.+..|.++|+..|.|++++.+++.++.+++..+++.++++++.+++.|+..+.+.+.+ .+
T Consensus 134 ~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP 213 (453)
T PRK09249 134 FAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLP 213 (453)
T ss_pred CCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 2 2689999998885 66789999999999999999999999999998889999999999999998556666554 47
Q ss_pred CCChhHHHHHHHHHHhCCCe-EEEEeee
Q 015808 238 GFNDDEICDFVELTRDRPIN-IRFIEFM 264 (400)
Q Consensus 238 ~~n~~el~~l~~~~~~~gv~-~~~~~~~ 264 (400)
+.|.+++.+.++++.+.+++ +.+..+.
T Consensus 214 gqt~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 214 KQTPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 88999999999999998874 4444444
No 74
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.64 E-value=3e-14 Score=142.03 Aligned_cols=167 Identities=12% Similarity=0.235 Sum_probs=128.7
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh--------CCCCEEEEECCCccc--hhhHHHHHHHhhhcC-
Q 015808 93 ERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT--------SGVDKIRLTGGEPTV--RKDIEEACFHLSKLK- 161 (400)
Q Consensus 93 ~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~--------~g~~~i~~~GGEPll--~~~l~~~i~~~~~~~- 161 (400)
..|+.+|.||....... .......+-+.++++++.. .++..|.|.||+|++ ..++.++++.+++..
T Consensus 57 PFC~~~C~yC~~~~~~~---~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~ 133 (455)
T TIGR00538 57 PFCHKACYFCGCNVIIT---RQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSPEQISRLMKLIRENFP 133 (455)
T ss_pred CCccCcCCCCCCCccCC---CCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCHHHHHHHHHHHHHhCC
Confidence 67999999998764321 1122232334444444432 367889999999985 455899999998742
Q ss_pred ---CCceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE-e
Q 015808 162 ---GLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-M 236 (400)
Q Consensus 162 ---g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v-~ 236 (400)
+. .+++.||+..++ +.+..|.++|+..|.|++++.+++.++.+++..+++.+.++++.++++|+..+.+.+.+ .
T Consensus 134 ~~~~~-eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl 212 (455)
T TIGR00538 134 FNADA-EISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGL 212 (455)
T ss_pred CCCCC-eEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeC
Confidence 33 688999998875 56799999999999999999999999999988889999999999999999436666544 4
Q ss_pred cCCChhHHHHHHHHHHhCCCe-EEEEee
Q 015808 237 RGFNDDEICDFVELTRDRPIN-IRFIEF 263 (400)
Q Consensus 237 ~~~n~~el~~l~~~~~~~gv~-~~~~~~ 263 (400)
++.|.+++.+.++++.+++++ +.+..+
T Consensus 213 Pgqt~e~~~~tl~~~~~l~~~~is~y~L 240 (455)
T TIGR00538 213 PKQTKESFAKTLEKVAELNPDRLAVFNY 240 (455)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 788999999999999999884 555555
No 75
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.64 E-value=5.5e-14 Score=139.88 Aligned_cols=174 Identities=13% Similarity=0.218 Sum_probs=132.2
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh--------CCCCEEEEECCCccc--hhhHHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT--------SGVDKIRLTGGEPTV--RKDIEEACF 155 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~--------~g~~~i~~~GGEPll--~~~l~~~i~ 155 (400)
.|.|++.- |+.+|.||....... .......+-+..+++++.. .++..|.|.||+|++ .+++.++++
T Consensus 52 ~LYvHIPf-C~~~C~yC~~~~~~~---~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~ 127 (453)
T PRK13347 52 SLYLHVPF-CRSLCWFCGCNTIIT---QRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMA 127 (453)
T ss_pred EEEEEeCC-ccccCCCCCCcCcCc---cccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHH
Confidence 45555544 999999998764321 1222233334555555441 246789999999996 356899999
Q ss_pred HhhhcCCC---ceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEE
Q 015808 156 HLSKLKGL---KTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV 231 (400)
Q Consensus 156 ~~~~~~g~---~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i 231 (400)
.+++..++ ..+++.||+..++ +.+..|.+.|++.|.|++++.+++.++.+++..+++.+.++++.+++.|+..+.+
T Consensus 128 ~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~ 207 (453)
T PRK13347 128 ALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINF 207 (453)
T ss_pred HHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 99874322 1688999998885 5668999999999999999999999999999888999999999999999944777
Q ss_pred EEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEee
Q 015808 232 NCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEF 263 (400)
Q Consensus 232 ~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~ 263 (400)
.+.+ .++++.+++.+.++++.+++++ +.+..+
T Consensus 208 dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l 241 (453)
T PRK13347 208 DLIYGLPHQTVESFRETLDKVIALSPDRIAVFGY 241 (453)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 6555 4788999999999999998874 444444
No 76
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.63 E-value=6.7e-14 Score=138.37 Aligned_cols=184 Identities=14% Similarity=0.198 Sum_probs=134.3
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-------CCCCEEEEECCCccch-h-hHHHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-------SGVDKIRLTGGEPTVR-K-DIEEACFH 156 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-------~g~~~i~~~GGEPll~-~-~l~~~i~~ 156 (400)
.|.|++ ..|+.+|.||....... .......+-+.++++++.. ..+..|.|.||+|++. + ++.++++.
T Consensus 41 ~lYvHI-PFC~~~C~yC~~~~~~~---~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~ 116 (430)
T PRK08208 41 SLYIHI-PFCEMRCGFCNLFTRTG---ADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDS 116 (430)
T ss_pred EEEEEe-CCccCcCCCCCCccccC---CccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHH
Confidence 455555 67999999998754321 1112222333444444332 2366888999999875 3 37777777
Q ss_pred hhhcCCC----ceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEE
Q 015808 157 LSKLKGL----KTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV 231 (400)
Q Consensus 157 ~~~~~g~----~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i 231 (400)
+++..++ ..+++.||+..++ +.+..|.+.|+..|.|++++.+++..+.+.+..+++.+.++++.+++.|+..+.+
T Consensus 117 i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~ 196 (430)
T PRK08208 117 VERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNI 196 (430)
T ss_pred HHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 7654332 1578899998775 5678888999999999999999999998888778999999999999999933556
Q ss_pred EEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc
Q 015808 232 NCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV 273 (400)
Q Consensus 232 ~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~ 273 (400)
.+.+ .++++.+++.+.++++.+++++ +.+..+.+..++.+..
T Consensus 197 dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~ 240 (430)
T PRK08208 197 DLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGR 240 (430)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccch
Confidence 6555 3778999999999999998874 6666677766665544
No 77
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.63 E-value=3.3e-14 Score=138.49 Aligned_cols=178 Identities=22% Similarity=0.344 Sum_probs=134.5
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEECCCccc-hhh-HHHHHHHhhh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT----SGVDKIRLTGGEPTV-RKD-IEEACFHLSK 159 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~----~g~~~i~~~GGEPll-~~~-l~~~i~~~~~ 159 (400)
||+| ..|+.+|.||...... .......+.+.++++++.. .++..|.|.||+|++ .++ +..+++.+++
T Consensus 7 YiHi---PfC~~~C~yC~~~~~~----~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~ 79 (374)
T PRK05799 7 YIHI---PFCKQKCLYCDFPSYS----GKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKK 79 (374)
T ss_pred EEEe---CCccCCCCCCCCCccc----CCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHh
Confidence 4555 4599999999876532 1222333446666666643 236789999999996 555 4556666654
Q ss_pred c---CCCceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q 015808 160 L---KGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV 235 (400)
Q Consensus 160 ~---~g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v 235 (400)
. .++ .+++.||+..++ +.++.|.+.|+..|.|++++.+++..+.+.+..+++.++++++.+++.|++.+.+.+.+
T Consensus 80 ~~~~~~~-eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~ 158 (374)
T PRK05799 80 LNKKEDL-EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMF 158 (374)
T ss_pred CCCCCCC-EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Confidence 2 234 688999998775 56789999999999999999999999999777789999999999999998447666655
Q ss_pred -ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCC
Q 015808 236 -MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVW 271 (400)
Q Consensus 236 -~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~ 271 (400)
.+|++.+++.+.++++.+++++ +....+.+..++++
T Consensus 159 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 159 GLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 4788999999999999998874 66667777777654
No 78
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.63 E-value=5.4e-14 Score=133.22 Aligned_cols=200 Identities=21% Similarity=0.287 Sum_probs=147.0
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccchhh-HHHHHHHhhhcC-C
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKLK-G 162 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll~~~-l~~~i~~~~~~~-g 162 (400)
...|++|+.|+.+|.||........ .....++.|++.+.++.+.+.|+..|.|+||+ |.+..+ +.++++.+++.. .
T Consensus 6 n~~i~~T~~C~~~C~FC~~~~~~~~-~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~ 84 (309)
T TIGR00423 6 NRNINFTNICVGKCKFCAFRAREKD-KDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD 84 (309)
T ss_pred eeeecCccccccCCccCCCccCCCC-CCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 4568999999999999988653221 23347999999999999989999999999985 656665 689999998752 2
Q ss_pred CceEEEE----------ecCcchhhhHHHHHHcCCCeEE-EecCCCCHHHHHHhhcCC-CHHHHHHHHHHHHHcCCCcEE
Q 015808 163 LKTLAMT----------TNGLTLARKLPKLKESGLTSVN-ISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVK 230 (400)
Q Consensus 163 ~~~~~i~----------TNG~ll~~~~~~l~~~g~~~i~-iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~ 230 (400)
+ .+... ++|....+.+..|+++|++.+. ++.+..+++..+.+.+++ +.++.++.++.+.++|+ ++.
T Consensus 85 i-~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi-~~~ 162 (309)
T TIGR00423 85 V-HIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGI-PTT 162 (309)
T ss_pred c-eEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-Cce
Confidence 3 23211 4565567788999999999885 688888888888886544 69999999999999999 887
Q ss_pred EEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecC----CCCC-Cccc--CCCCHHHHHHHHHH
Q 015808 231 VNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPF----DGNV-WNVK--KLVPYAEMLDTVVK 288 (400)
Q Consensus 231 i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~----~~~~-~~~~--~~~~~~e~~~~i~~ 288 (400)
..+.+..+.+.++..+++.++++++.+ ..|..+.|. .+++ .... ...+..+.++.+.-
T Consensus 163 s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~ 228 (309)
T TIGR00423 163 ATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAI 228 (309)
T ss_pred eeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHH
Confidence 777776567888999999999987653 223333332 2333 3322 34666677666543
No 79
>PRK08508 biotin synthase; Provisional
Probab=99.62 E-value=5e-14 Score=131.22 Aligned_cols=192 Identities=19% Similarity=0.222 Sum_probs=145.9
Q ss_pred cCcccCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhCCCCEEEEE-CCCccchhh---HHHHHHHhhhcCCCce
Q 015808 91 LTERCNLRCHYCMPPEGVDLT-PKPQLLSLNEILRLAYLFVTSGVDKIRLT-GGEPTVRKD---IEEACFHLSKLKGLKT 165 (400)
Q Consensus 91 iT~~CNl~C~yC~~~~~~~~~-~~~~~~s~e~i~~ii~~~~~~g~~~i~~~-GGEPll~~~---l~~~i~~~~~~~g~~~ 165 (400)
-|.+|+.+|.||.+....... .....+++|++.+.++++.+.|+..+.+. +|+-+-.+. +.++++.+++. +. .
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~-~p-~ 90 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKE-VP-G 90 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhh-CC-C
Confidence 378999999999886532211 22334899999999999988999999886 454222222 46777788764 22 2
Q ss_pred EEE-EecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHH
Q 015808 166 LAM-TTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEI 244 (400)
Q Consensus 166 ~~i-~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el 244 (400)
+.+ .++|.+..+.+..|+++|++.+.+.+++ .++.|..+....+|+.+++.++.++++|+ .+....++..|.+.+++
T Consensus 91 l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~sg~I~GlGEt~ed~ 168 (279)
T PRK08508 91 LHLIACNGTASVEQLKELKKAGIFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEAGL-GLCSGGIFGLGESWEDR 168 (279)
T ss_pred cEEEecCCCCCHHHHHHHHHcCCCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCC-eecceeEEecCCCHHHH
Confidence 343 5789887888999999999999999999 47788888777779999999999999999 77777777677788999
Q ss_pred HHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 015808 245 CDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 287 (400)
Q Consensus 245 ~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 287 (400)
.+++.++++++.+ +-...+.|..+.+... ...+..+.++.+.
T Consensus 169 ~~~l~~lr~L~~~svpl~~~~p~~~t~~~~-~~~~~~~~lr~iA 211 (279)
T PRK08508 169 ISFLKSLASLSPHSTPINFFIPNPALPLKA-PTLSADEALEIVR 211 (279)
T ss_pred HHHHHHHHcCCCCEEeeCCcCCCCCCCCCC-CCCCHHHHHHHHH
Confidence 9999999998886 5555566766776653 3466777766654
No 80
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.62 E-value=8.6e-14 Score=137.84 Aligned_cols=193 Identities=20% Similarity=0.311 Sum_probs=146.1
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEC------CCccch-hhHHHHHHHh
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG------GEPTVR-KDIEEACFHL 157 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G------GEPll~-~~l~~~i~~~ 157 (400)
.+..|.++.+||++|+||..+... ...+..+++++.+.++.+.+.|.+.|.|+| |+++.+ +.+.++++.+
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~---G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i 211 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIR---GKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEEL 211 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeeccc---CCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHH
Confidence 456788999999999999876432 234567899999999988888999998874 666664 4589999999
Q ss_pred hhcCCCceEEE-EecCcchhhh-HHHHHHcC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 158 SKLKGLKTLAM-TTNGLTLARK-LPKLKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 158 ~~~~g~~~~~i-~TNG~ll~~~-~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
.+..++..+.+ .++...++++ ++.+.++| +..+.+++++.+++..+.+++..+.+.+.+.++.+++++. .+.+.+
T Consensus 212 ~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~-~i~i~~ 290 (430)
T TIGR01125 212 GKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCP-DAVLRT 290 (430)
T ss_pred HhcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCC-CCeEeE
Confidence 87644534443 3455555544 46666764 6789999999999999999887789999999999999865 445444
Q ss_pred EEe---cCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc-cCCCCHHH
Q 015808 234 VVM---RGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV-KKLVPYAE 281 (400)
Q Consensus 234 ~v~---~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~-~~~~~~~e 281 (400)
.++ +|.+.+++.++++++.+.+++ +.+..|.|..|++... ...++.+.
T Consensus 291 ~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~ 343 (430)
T TIGR01125 291 TFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALPDQVPEEV 343 (430)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccCCCCCCHHH
Confidence 443 778999999999999998885 6677899998877643 33455443
No 81
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.62 E-value=7.9e-14 Score=138.07 Aligned_cols=192 Identities=19% Similarity=0.405 Sum_probs=143.6
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEC------------------CCccc
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG------------------GEPTV 146 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G------------------GEPll 146 (400)
.+..+.++.+||++|+||..+... ......+.+++.+.++.+.+.|++.|.|+| |+|+
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~---G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~- 214 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMR---GDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPV- 214 (440)
T ss_pred cEEEEEeccCCCCCCccCCccccc---CCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccch-
Confidence 457788999999999999876432 234567899999999998888998888873 3444
Q ss_pred hhhHHHHHHHhhhcCCCceEEEE---ecCcchhhhHHHHHHcCCC--eEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHH
Q 015808 147 RKDIEEACFHLSKLKGLKTLAMT---TNGLTLARKLPKLKESGLT--SVNISLDTLVPAKFEFLTRRKGHEKVMESINAA 221 (400)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~~~~i~---TNG~ll~~~~~~l~~~g~~--~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l 221 (400)
++.+.++++.+.+. ++ .+.+. +++ ..++.++.+.+ |.. .+.|++++.+++.++.+++..+++.+++.++.+
T Consensus 215 ~~~~~~Ll~~l~~~-~~-~~r~~~~~p~~-~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~l 290 (440)
T PRK14862 215 KTRMTDLCEALGEL-GA-WVRLHYVYPYP-HVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKW 290 (440)
T ss_pred hhHHHHHHHHHHhc-CC-EEEEecCCCCc-CCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHH
Confidence 56789999999876 66 44543 233 23444566666 554 788999999999999998877899999999999
Q ss_pred HHcCCCcEEEEEEE---ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCc-ccCCCCHHHHHHH
Q 015808 222 IEVGYNPVKVNCVV---MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWN-VKKLVPYAEMLDT 285 (400)
Q Consensus 222 ~~~g~~~v~i~~~v---~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~-~~~~~~~~e~~~~ 285 (400)
++.+. .+.+.+.+ .+|.+.++++++++++++.+++ +.++.|.|..|++.. ....++.++..++
T Consensus 291 r~~~~-~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r 358 (440)
T PRK14862 291 REICP-DLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEER 358 (440)
T ss_pred HHHCC-CceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHH
Confidence 99754 44555444 3788999999999999999985 667889999988764 2344555443333
No 82
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.61 E-value=1.2e-13 Score=136.87 Aligned_cols=191 Identities=16% Similarity=0.229 Sum_probs=146.4
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEC-------CCccchhhHHHHHHHh
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG-------GEPTVRKDIEEACFHL 157 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G-------GEPll~~~l~~~i~~~ 157 (400)
..+.|.++.+||.+|.||..+... ......+.+++.+.++.+.+.|++.|.|+| |++...+++.++++.+
T Consensus 138 ~~~~l~isrGC~~~CsfC~~p~~~---g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l 214 (440)
T PRK14334 138 LSAHLTIMRGCNHHCTYCIVPTTR---GPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLV 214 (440)
T ss_pred eEEEEEeccCCCCCCcCCCcchhc---CCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHH
Confidence 467899999999999999886532 223357899999999999889998888864 5554446688888888
Q ss_pred hhcCCCceEEEEe-cCcchhh-hHHHHHHc--CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 158 SKLKGLKTLAMTT-NGLTLAR-KLPKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 158 ~~~~g~~~~~i~T-NG~ll~~-~~~~l~~~--g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
.+. ++..+.+.+ |...+++ .++.|.+. ++..+.|++++.+++..+.+.+..+.+.+++.++.++++|. .+.+++
T Consensus 215 ~~~-~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~-~i~i~~ 292 (440)
T PRK14334 215 GAS-GIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALP-DVVLST 292 (440)
T ss_pred Hhc-CCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCC-CcEEEE
Confidence 764 654566654 6666654 45666664 48899999999999999999888889999999999999987 555554
Q ss_pred EE---ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc-cCCCCHH
Q 015808 234 VV---MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV-KKLVPYA 280 (400)
Q Consensus 234 ~v---~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~-~~~~~~~ 280 (400)
.+ .||++.+++.+.++++.+.+++ +.++.|.|..+++... ...++.+
T Consensus 293 d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~ 344 (440)
T PRK14334 293 DIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPRE 344 (440)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhccCCCCHH
Confidence 33 4778999999999999999885 6677888988876543 2345443
No 83
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.61 E-value=4.1e-14 Score=133.40 Aligned_cols=234 Identities=18% Similarity=0.269 Sum_probs=161.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC---CCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchh--
Q 015808 102 CMPPEGVDLTPKPQLLSLNEILRLAYLFVTS---GVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-- 176 (400)
Q Consensus 102 C~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~---g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~-- 176 (400)
|+...... .-.-+.+.|+|+..++.++.. +...|.|+||||+++.||.++++.+++. |..+|.+.|||..+.
T Consensus 78 CFa~A~~a--g~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTvr~DL~eiv~~a~e~-g~~hVqinTnGirlA~~ 154 (475)
T COG1964 78 CFAYAEEA--GYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTLRDDLIEIIKIAREE-GYDHVQLNTNGIRLAFD 154 (475)
T ss_pred CcCchhhc--CcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCccchhhHHHHHHHHhhc-CccEEEEccCceeeccC
Confidence 88765432 234468999999999998764 3578999999999999999999999986 888999999998883
Q ss_pred -hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCC
Q 015808 177 -RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP 255 (400)
Q Consensus 177 -~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~g 255 (400)
+....|.++|+..|-.|+||.+++.|.+. +-.+-.+|+.++++|...+.+--++.+|.|++++.++++|+...-
T Consensus 155 ~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgvNd~~lG~iirfa~~n~ 229 (475)
T COG1964 155 PEYVKKLREAGVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFALNNI 229 (475)
T ss_pred HHHHHHHHhcCCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhcccChHHHHHHHHHHHhcc
Confidence 45689999999999999999999987665 444444899999999845777778889999999999999998742
Q ss_pred CeEEEEeeecCC--C-CC--CcccCCCCHHHHHHHHHHhCCCceeccCCCCCCceeE--E-eCCCCceEEEEcCC-CcCc
Q 015808 256 INIRFIEFMPFD--G-NV--WNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNF--K-IDGHHGNVSFITSM-TEHF 326 (400)
Q Consensus 256 v~~~~~~~~p~~--~-~~--~~~~~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~ 326 (400)
--++-+.|.|+. | .+ ......++..+.++.+.++..+.....+...-....- . +....+. ....+ ....
T Consensus 230 dvVrgVnfQPVsltGr~~~~~r~~~RITIPd~iK~ieeQT~g~i~~~d~yPvp~~~~isr~v~al~~~--~~~~~s~h~~ 307 (475)
T COG1964 230 DVVRGVNFQPVSLTGRMPQKERERFRITIPDAIKKIEEQTDGEISKDDWYPVPIAVPISRFVEALTGD--PKYELTSHPA 307 (475)
T ss_pred ccccccceEEEEEecccchhhhhheEeechhHHHhHHHhcCCeeeccccccCcchhhHHHHHHHHcCC--CceeeeccCC
Confidence 234555666653 1 11 1112345566777888877765443332211110000 0 0000000 00011 1345
Q ss_pred CCCCCeEEEccCCeEEecc
Q 015808 327 CAGCNRLRLLADGNFKVCL 345 (400)
Q Consensus 327 C~~~~~l~I~~dG~v~pC~ 345 (400)
|+...++..+.+|.+.|=.
T Consensus 308 cg~atYvf~~~~~r~iPit 326 (475)
T COG1964 308 CGAATYVFYDEEKKVIPIT 326 (475)
T ss_pred CCceEEEEecCCCcEEeee
Confidence 7666677888889999975
No 84
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.61 E-value=5.5e-14 Score=137.05 Aligned_cols=183 Identities=18% Similarity=0.299 Sum_probs=134.9
Q ss_pred EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC---CCCEEEEECCCccc--hhhHHHHHHHhhhcC
Q 015808 87 LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTS---GVDKIRLTGGEPTV--RKDIEEACFHLSKLK 161 (400)
Q Consensus 87 l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~---g~~~i~~~GGEPll--~~~l~~~i~~~~~~~ 161 (400)
+.|++- .|+.+|.||....... ......-..+.+.+.++.+... ++..|.|.||+|++ ..++.++++.+++..
T Consensus 4 lYihiP-fC~~~C~yC~~~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~ 81 (377)
T PRK08599 4 AYIHIP-FCEHICYYCDFNKVFI-KNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSAEQLERLLTAIHRNL 81 (377)
T ss_pred EEEEeC-CcCCCCCCCCCeeecc-CccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCHHHHHHHHHHHHHhC
Confidence 344443 4999999998654211 1111111234444444433333 46778889999986 355899999988753
Q ss_pred CC---ceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE-e
Q 015808 162 GL---KTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-M 236 (400)
Q Consensus 162 g~---~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v-~ 236 (400)
++ ..+++.+|+..++ +.+..|.++|++.|.|++++.+++.++.+++..+++.+.++++.++++|+..+.+.+++ .
T Consensus 82 ~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~Gl 161 (377)
T PRK08599 82 PLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYAL 161 (377)
T ss_pred CCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCC
Confidence 33 2688999987775 66789999999999999999999999999988889999999999999998446776655 4
Q ss_pred cCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCC
Q 015808 237 RGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVW 271 (400)
Q Consensus 237 ~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~ 271 (400)
+|++.+++.+.++++.+++++ +.+..+.|..++.+
T Consensus 162 Pgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 162 PGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred CCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChh
Confidence 788999999999999998884 55666667666544
No 85
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.59 E-value=1.1e-13 Score=133.98 Aligned_cols=186 Identities=22% Similarity=0.327 Sum_probs=136.0
Q ss_pred hhcCCCccEE---EEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccch-hh-HH
Q 015808 78 DSFGRMHTYL---RISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-KD-IE 151 (400)
Q Consensus 78 ~~~~~~~~~l---~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll~-~~-l~ 151 (400)
..+|+.+.++ .|++|+.|+.+|.||....... ......++.|++.+.++++.+.|+..|.++||+ |... .+ +.
T Consensus 50 ~~~G~~v~~~~~~~i~~Tn~C~~~C~fC~~~~~~~-~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~ 128 (371)
T PRK07360 50 EQVGDTVTYVVNRNINFTNICEGHCGFCAFRRDEG-DHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYL 128 (371)
T ss_pred HhcCCeEEEEeccCcccchhhhcCCccCCcccCCC-CCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHH
Confidence 4467777653 3778999999999999876422 123345999999999999999999999999985 7664 33 67
Q ss_pred HHHHHhhhc-CCCceEEEE----------ecCcchhhhHHHHHHcCCCeEE-EecCCCCHHHHHHhhcCC-CHHHHHHHH
Q 015808 152 EACFHLSKL-KGLKTLAMT----------TNGLTLARKLPKLKESGLTSVN-ISLDTLVPAKFEFLTRRK-GHEKVMESI 218 (400)
Q Consensus 152 ~~i~~~~~~-~g~~~~~i~----------TNG~ll~~~~~~l~~~g~~~i~-iSldg~~~~~~~~ir~~~-~~~~v~~~i 218 (400)
++++.+++. .++ .+... +.|.+..+.+..|+++|++.+. .+-...+++.++.+...+ +++..++.+
T Consensus 129 ~~i~~ik~~~~~i-~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i 207 (371)
T PRK07360 129 EILEAIKEEFPDI-HLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIV 207 (371)
T ss_pred HHHHHHHHhCCCc-ceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHH
Confidence 888888864 233 23322 4576666788999999999884 222223344444554433 688899999
Q ss_pred HHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecC
Q 015808 219 NAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPF 266 (400)
Q Consensus 219 ~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~ 266 (400)
+.+.++|+ ++.....+..|++.++..+.+.+++++..+ ..+..|+|+
T Consensus 208 ~~a~~~Gl-~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fIp~ 255 (371)
T PRK07360 208 KTAHKLGL-PTTSTMMYGHVETPEHRIDHLLILREIQQETGGITEFVPL 255 (371)
T ss_pred HHHHHcCC-CceeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEec
Confidence 99999999 888888887788899999999999987763 344455553
No 86
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=99.58 E-value=1e-13 Score=127.92 Aligned_cols=197 Identities=15% Similarity=0.212 Sum_probs=142.7
Q ss_pred ccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCC-CCEEEEECCCccchhh--HHHHHHHhhhc
Q 015808 84 HTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRKD--IEEACFHLSKL 160 (400)
Q Consensus 84 ~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g-~~~i~~~GGEPll~~~--l~~~i~~~~~~ 160 (400)
++.+-+.+|..|...|.||+...... .....++.+++...++.++... +..|.|+||+||+-++ +.++++.+++.
T Consensus 110 ~drvLll~t~~C~vyCRyCfRr~~~~--~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~I 187 (369)
T COG1509 110 PDRVLLLVTGVCAVYCRYCFRRRFVG--QDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSDKKLEWLLKRLRAI 187 (369)
T ss_pred CCeEEEEecCcccceeeecccccccc--cccccCCHHHHHHHHHHHHcCchhheEEecCCCccccCHHHHHHHHHHHhcC
Confidence 45567889999999999999986543 2233379999999999998754 8899999999999755 89999999998
Q ss_pred CCCceEEEEecC-----cchhhhHHHHHHc-CC-CeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 161 KGLKTLAMTTNG-----LTLARKLPKLKES-GL-TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 161 ~g~~~~~i~TNG-----~ll~~~~~~l~~~-g~-~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
+.++.+.|-|-. ..+++.+..++.. +. .++...+..+.+- -..+.+++++|+++|+ .+.-++
T Consensus 188 pHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Ei----------t~e~~~A~~~L~~aGv-~l~NQs 256 (369)
T COG1509 188 PHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEI----------TPEAREACAKLRDAGV-PLLNQS 256 (369)
T ss_pred CceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhhc----------CHHHHHHHHHHHHcCc-eeecch
Confidence 877667776643 4456666555554 22 2444445443221 2677889999999999 999999
Q ss_pred EEecCCChh--HHHHHHHHHHhCCCeE-EEEeeecCCCCCCcccCCCCHHHHHHHHHHhCCCc
Q 015808 234 VVMRGFNDD--EICDFVELTRDRPINI-RFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGL 293 (400)
Q Consensus 234 ~v~~~~n~~--el~~l~~~~~~~gv~~-~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~l 293 (400)
|+.+|+|++ -+.++.+.+...|+.. ..+..-+..|.....-......++++.++....++
T Consensus 257 VLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i~~~~~i~~~lr~~~SG~ 319 (369)
T COG1509 257 VLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPIAEGLQIVEELRGRTSGY 319 (369)
T ss_pred heecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceeccHHHHHHHHHHHHHhCCCc
Confidence 999999884 4688999888888853 33444555565544433344556777777766554
No 87
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.58 E-value=1.8e-13 Score=127.28 Aligned_cols=197 Identities=20% Similarity=0.267 Sum_probs=159.8
Q ss_pred EEcCc-ccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHhCC-CCEEEEECCC--ccchhhHHHHHHHhhhcCCC
Q 015808 89 ISLTE-RCNLRCHYCMPPEGVDL-TPKPQLLSLNEILRLAYLFVTSG-VDKIRLTGGE--PTVRKDIEEACFHLSKLKGL 163 (400)
Q Consensus 89 i~iT~-~CNl~C~yC~~~~~~~~-~~~~~~~s~e~i~~ii~~~~~~g-~~~i~~~GGE--Pll~~~l~~~i~~~~~~~g~ 163 (400)
|++++ .|+-.|.||++....+. ......++.|++...++.+++.| .+.+..++|+ +-.-+++.++++.+++..++
T Consensus 54 i~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~l 133 (335)
T COG0502 54 ISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGL 133 (335)
T ss_pred EEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCc
Confidence 55544 46999999999864422 23556799999999999999999 5556666777 43445578888888865677
Q ss_pred ceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhH
Q 015808 164 KTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE 243 (400)
Q Consensus 164 ~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~e 243 (400)
.+.+ |-|.+..+.+++|+++|++.++.-||+ +++.|+.+....+|+..+++++.++++|+ .+.....+.-|.+.++
T Consensus 134 -e~c~-slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~Gi-~vcsGgI~GlGEs~eD 209 (335)
T COG0502 134 -EVCA-SLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREAGI-EVCSGGIVGLGETVED 209 (335)
T ss_pred -HHhh-ccCCCCHHHHHHHHHcChhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHcCC-ccccceEecCCCCHHH
Confidence 4544 778777899999999999999999999 89999999999999999999999999999 8888888877778888
Q ss_pred HHHHHHHHHhCC-C-eEEEEeeecCCCCCCcccCCCCHHHHHHHHHHh
Q 015808 244 ICDFVELTRDRP-I-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKK 289 (400)
Q Consensus 244 l~~l~~~~~~~g-v-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~ 289 (400)
-.+++..+.++. . .+-+..+.|..|+++...+..+..++++.+.-.
T Consensus 210 ri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~ 257 (335)
T COG0502 210 RAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVA 257 (335)
T ss_pred HHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHH
Confidence 777777777776 5 477788999999999988888888888887653
No 88
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.58 E-value=2.1e-13 Score=135.85 Aligned_cols=178 Identities=19% Similarity=0.267 Sum_probs=130.4
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh---------CCCCEEEEECCCccc--hhhHHHHHHHhhhcC
Q 015808 93 ERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT---------SGVDKIRLTGGEPTV--RKDIEEACFHLSKLK 161 (400)
Q Consensus 93 ~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~---------~g~~~i~~~GGEPll--~~~l~~~i~~~~~~~ 161 (400)
..|+.+|.||....... .....+..+-+..+++++.. .++..|.|.||+|++ ..++.++++.+.+..
T Consensus 171 PFC~~~C~YCsf~s~~~--~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f 248 (488)
T PRK08207 171 PFCPTRCLYCSFPSYPI--KGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTAEELERLLEEIYENF 248 (488)
T ss_pred CCCCCcCCCCCCccccC--CCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCHHHHHHHHHHHHHhc
Confidence 58999999998765321 11122222334444444332 246789999999987 456889998887642
Q ss_pred ----CCceEEEEe-cCcch-hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q 015808 162 ----GLKTLAMTT-NGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV 235 (400)
Q Consensus 162 ----g~~~~~i~T-NG~ll-~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v 235 (400)
++..+++.. +.-.+ .+.+..|.++|++.|.|++++.++++++.+.+..+++.+.++++.++++|+..+.+...+
T Consensus 249 ~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~ 328 (488)
T PRK08207 249 PDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLII 328 (488)
T ss_pred cccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEe
Confidence 232444443 43344 577799999999999999999999999999777789999999999999999556555554
Q ss_pred -ecCCChhHHHHHHHHHHhCCC-eEEEEeeecCCCCCCc
Q 015808 236 -MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVWN 272 (400)
Q Consensus 236 -~~~~n~~el~~l~~~~~~~gv-~~~~~~~~p~~~~~~~ 272 (400)
.||++.+++.+.++++.++++ .+.+..+.+..++.+.
T Consensus 329 GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~ 367 (488)
T PRK08207 329 GLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLT 367 (488)
T ss_pred CCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHH
Confidence 477899999999999999988 4677777777766554
No 89
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.58 E-value=2.8e-13 Score=136.34 Aligned_cols=181 Identities=13% Similarity=0.209 Sum_probs=144.4
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCEEEEECCCccchhh-HHHHHHHhhhcCCC
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFV-TSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGL 163 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~-~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~ 163 (400)
...++.+.+|+++|.||...... ...+..+++.+.+.++.+. +.|+..|.|.+.+|+++++ +.++++.+.+...+
T Consensus 194 ~~~i~tSRGCp~~C~FC~~~~~~---~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l 270 (497)
T TIGR02026 194 VAVPNFARGCPFTCNFCSQWKFW---RRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPI 270 (497)
T ss_pred eeeeeccCCCCCCCCCCCCCCCC---ceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCC
Confidence 45678899999999999876532 3445568888888888775 4789999999999999865 78899988764213
Q ss_pred c-eEEEEecCcch--h-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEe-cC
Q 015808 164 K-TLAMTTNGLTL--A-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RG 238 (400)
Q Consensus 164 ~-~~~i~TNG~ll--~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~-~~ 238 (400)
. ...+.|....+ + +.+..+.++|+..|.+.+++.+++..+.+++..+.+.+.++++.++++|+ .+.+.+++. ++
T Consensus 271 ~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi-~~~~~~I~G~P~ 349 (497)
T TIGR02026 271 SVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNI-LSEAQFITGFEN 349 (497)
T ss_pred CeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCC-cEEEEEEEECCC
Confidence 1 44555655444 4 45688889999999999999999999999888889999999999999999 787777664 78
Q ss_pred CChhHHHHHHHHHHhCCCe-EEEEeeecCCCCC
Q 015808 239 FNDDEICDFVELTRDRPIN-IRFIEFMPFDGNV 270 (400)
Q Consensus 239 ~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~ 270 (400)
.+.+++.+.++++.+++.+ +.+..+.|+.|++
T Consensus 350 et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~ 382 (497)
T TIGR02026 350 ETDETFEETYRQLLDWDPDQANWLMYTPWPFTS 382 (497)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEecCCCCcH
Confidence 8999999999999998875 5556677777654
No 90
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.56 E-value=2.2e-13 Score=131.15 Aligned_cols=207 Identities=20% Similarity=0.206 Sum_probs=151.6
Q ss_pred hcCCCccE---EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccc-h-hhHHHH
Q 015808 79 SFGRMHTY---LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV-R-KDIEEA 153 (400)
Q Consensus 79 ~~~~~~~~---l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll-~-~~l~~~ 153 (400)
.+|+.+.+ ..|+.|+.|..+|.||........ .....++.|++.+.+..+.+.|+..|.+.||+..- . ..+.++
T Consensus 39 ~~g~~v~~~~~~~in~Tn~C~~~C~FCa~~~~~~~-~~~y~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~ 117 (351)
T TIGR03700 39 KHGDKVYFNVNRHLNYTNICVNGCAFCAFQRERGE-PGAYAMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDM 117 (351)
T ss_pred hcCCeEEEeccCCcccccccccCCccCceeCCCCC-cccCCCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHH
Confidence 35666543 347889999999999998753321 22334899999999999999999999999997543 2 237888
Q ss_pred HHHhhhcC-CCceEEEE----------ecCcchhhhHHHHHHcCCCeEE-EecCCCCHHHHHHhhcCC-CHHHHHHHHHH
Q 015808 154 CFHLSKLK-GLKTLAMT----------TNGLTLARKLPKLKESGLTSVN-ISLDTLVPAKFEFLTRRK-GHEKVMESINA 220 (400)
Q Consensus 154 i~~~~~~~-g~~~~~i~----------TNG~ll~~~~~~l~~~g~~~i~-iSldg~~~~~~~~ir~~~-~~~~v~~~i~~ 220 (400)
++.+++.. ++ .+... +.|....+.+.+|+++|++.+. ..++..+++.+..+.+.+ +.++.++.++.
T Consensus 118 i~~Ik~~~p~i-~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~ 196 (351)
T TIGR03700 118 IRTLKEAYPDL-HVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRT 196 (351)
T ss_pred HHHHHHHCCCc-eEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHH
Confidence 99988752 34 33322 2455555678999999999886 688888888888887654 48999999999
Q ss_pred HHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecC----CCCCCccc--CCCCHHHHHHHHHH
Q 015808 221 AIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPF----DGNVWNVK--KLVPYAEMLDTVVK 288 (400)
Q Consensus 221 l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~----~~~~~~~~--~~~~~~e~~~~i~~ 288 (400)
+.++|+ ++...+.+..|++.++..+.+..++++++. ..+..|+|. .++++... ...+..+.++.+.-
T Consensus 197 a~~~Gi-~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~ 270 (351)
T TIGR03700 197 AHELGL-KTNATMLYGHIETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAV 270 (351)
T ss_pred HHHcCC-CcceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHH
Confidence 999999 888888887788888888888888887663 223455554 36666543 45666777666543
No 91
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.56 E-value=6.5e-13 Score=125.07 Aligned_cols=219 Identities=12% Similarity=0.152 Sum_probs=162.9
Q ss_pred CCCchhhhhcCCCccEEEEEcCcccCC--------CCCCCCCCCCCCCCC--CCCCCC-HHHHHHHHHHHHhCCCCEEEE
Q 015808 71 RVSDMLIDSFGRMHTYLRISLTERCNL--------RCHYCMPPEGVDLTP--KPQLLS-LNEILRLAYLFVTSGVDKIRL 139 (400)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~i~iT~~CNl--------~C~yC~~~~~~~~~~--~~~~~s-~e~i~~ii~~~~~~g~~~i~~ 139 (400)
..+..+.+.||.++..|.|...-.||. .|.||.......... .....+ .+++...++.+.+.+...|.|
T Consensus 4 ~~~~~~~~~~g~~v~k~~~~~g~~cpnrdg~~~~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf 83 (302)
T TIGR01212 4 TLGDYLKERYGQKVFKITLHGGFSCPNRDGTKGRGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYF 83 (302)
T ss_pred hHHHHHHHHcCCceEEeecCCCCCCCCCCCCCCCCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEE
Confidence 345568899999999999999999999 599998754332210 112233 566666666665554445888
Q ss_pred ECCCccchhh--HHHHHHHhhhcCCCceEEEEecCcchhh-hHHH---HHHcCC-CeEEEecCCCCHHHHHHhhcCCCHH
Q 015808 140 TGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTLAR-KLPK---LKESGL-TSVNISLDTLVPAKFEFLTRRKGHE 212 (400)
Q Consensus 140 ~GGEPll~~~--l~~~i~~~~~~~g~~~~~i~TNG~ll~~-~~~~---l~~~g~-~~i~iSldg~~~~~~~~ir~~~~~~ 212 (400)
.||.|+..+. +.++++.+.+...+..+++.|+...+++ .++. +.+.|+ .+|.+.+++.++++.+.+.+..+.+
T Consensus 84 ~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~ 163 (302)
T TIGR01212 84 QAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFA 163 (302)
T ss_pred ECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHH
Confidence 9999997543 7889998887555557888888877754 3333 445577 5799999999999999998888899
Q ss_pred HHHHHHHHHHHcCCCcEEEEEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCccc------CCCCHHHHHH
Q 015808 213 KVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVK------KLVPYAEMLD 284 (400)
Q Consensus 213 ~v~~~i~~l~~~g~~~v~i~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~------~~~~~~e~~~ 284 (400)
.+.++++.++++|+ .+.+.+.+ .+|.+.+++.+.++++.+++++ +.+..+.|..++.+... ...+.+++++
T Consensus 164 ~~~~ai~~l~~~gi-~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~ 242 (302)
T TIGR01212 164 CYVDAVKRARKRGI-KVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYIS 242 (302)
T ss_pred HHHHHHHHHHHcCC-EEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999999999 77777666 3678889999999999999885 77788888887654432 3445566666
Q ss_pred HHHHhC
Q 015808 285 TVVKKF 290 (400)
Q Consensus 285 ~i~~~~ 290 (400)
.+....
T Consensus 243 ~~~~~l 248 (302)
T TIGR01212 243 LACDFL 248 (302)
T ss_pred HHHHHH
Confidence 666554
No 92
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.55 E-value=9e-13 Score=126.67 Aligned_cols=184 Identities=16% Similarity=0.266 Sum_probs=134.4
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHhCCCCEEEEECCCccch-hh-HHHHHHHhhhc
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLL---SLNEILRLAYLFVTSGVDKIRLTGGEPTVR-KD-IEEACFHLSKL 160 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~---s~e~i~~ii~~~~~~g~~~i~~~GGEPll~-~~-l~~~i~~~~~~ 160 (400)
||.| .-|..+|.||....... ....... -.+++.+.++.+....+..|.|.||-|++- ++ +.++++.+++.
T Consensus 10 YiHi---PFC~~kC~yC~f~~~~~-~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~ 85 (353)
T PRK05904 10 YIHI---PFCQYICTFCDFKRILK-TPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLNDQLLDILLSTIKPY 85 (353)
T ss_pred EEEe---CCccCcCCCCCCeeccC-CcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCCHHHHHHHHHHHHHh
Confidence 4555 45999999998764211 0001111 122333323222223467899999999874 34 77888887764
Q ss_pred C-CCceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ec
Q 015808 161 K-GLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MR 237 (400)
Q Consensus 161 ~-g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v-~~ 237 (400)
. ....+++.+|+..++ +.++.+.+.|+..|.|++++.+++..+.+.+..+.+.+.++++.++++|+..+.+.+++ .|
T Consensus 86 ~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlP 165 (353)
T PRK05904 86 VDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLP 165 (353)
T ss_pred cCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCC
Confidence 1 222789999998885 66789999999999999999999999999998889999999999999998447777655 47
Q ss_pred CCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc
Q 015808 238 GFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV 273 (400)
Q Consensus 238 ~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~ 273 (400)
|++.+++.+.++++.+.+++ +.+..+.+..++++..
T Consensus 166 gqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~ 202 (353)
T PRK05904 166 ILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKK 202 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhh
Confidence 88999999999999998874 6677777777765543
No 93
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.55 E-value=1.1e-12 Score=129.59 Aligned_cols=191 Identities=15% Similarity=0.315 Sum_probs=145.8
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch-------hhHHHHHHHhh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-------KDIEEACFHLS 158 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~-------~~l~~~i~~~~ 158 (400)
...|.++.+||++|.||..+... ...+..+.+++.+.++.+.+.|++.|.|+|.+...+ ..+.++++.+.
T Consensus 139 ~~~i~isrGCp~~CsfC~~~~~~---g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~ 215 (414)
T TIGR01579 139 RAFIKVQDGCNFFCSYCIIPFAR---GRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQIL 215 (414)
T ss_pred EEEEEeccCcCCCCCCCceeeec---CCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHh
Confidence 45678899999999999876422 245668899999999999889999999988555443 34788888888
Q ss_pred hcCCCceEEEEe-cCcchhh-hHHHHHHcC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHH--cCCCcEEEE
Q 015808 159 KLKGLKTLAMTT-NGLTLAR-KLPKLKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE--VGYNPVKVN 232 (400)
Q Consensus 159 ~~~g~~~~~i~T-NG~ll~~-~~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~--~g~~~v~i~ 232 (400)
+..++..+.+.+ +...+++ .++.+.+.+ +..+.+.+++.+++..+.+.+..+.+.+.+.++.+++ .|+ .+...
T Consensus 216 ~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi-~i~~~ 294 (414)
T TIGR01579 216 QIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDY-AFGTD 294 (414)
T ss_pred cCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eeeee
Confidence 755654455542 3333444 456666665 6789999999999999999887789999999999999 677 66655
Q ss_pred EEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCccc-CCCCHH
Q 015808 233 CVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVK-KLVPYA 280 (400)
Q Consensus 233 ~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~-~~~~~~ 280 (400)
+.+ .||.+.+++.+.++++.+.+++ +.+..|.|..|++.... ..++..
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~ 345 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPET 345 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCCCCCCHH
Confidence 555 4788999999999999998884 66778889888776543 245543
No 94
>PRK12928 lipoyl synthase; Provisional
Probab=99.55 E-value=9.1e-13 Score=122.69 Aligned_cols=187 Identities=18% Similarity=0.243 Sum_probs=142.9
Q ss_pred EEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC----ccch-hhHHHHHHHhhhcC-C
Q 015808 89 ISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE----PTVR-KDIEEACFHLSKLK-G 162 (400)
Q Consensus 89 i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE----Pll~-~~l~~~i~~~~~~~-g 162 (400)
+.+|++|+.+|+||....+ ....++.+++.+.++.+.+.|++.|.|+||. |-.. ..+.++++.+++.. .
T Consensus 64 v~is~gC~~~C~FCa~~~g-----~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~ 138 (290)
T PRK12928 64 LIMGSICTRRCAFCQVDKG-----RPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPG 138 (290)
T ss_pred EEecccccCcCCCCCccCC-----CCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCC
Confidence 3449999999999988752 2446899999999999999999999999975 3222 34788999988753 3
Q ss_pred CceEEEEecCcc--hhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcC--CCcEEEEEEEecC
Q 015808 163 LKTLAMTTNGLT--LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG--YNPVKVNCVVMRG 238 (400)
Q Consensus 163 ~~~~~i~TNG~l--l~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g--~~~v~i~~~v~~~ 238 (400)
+ .+.+.|-..+ ..+.+..++++|.+.+..-+.+ .++.++.+++..++++.++.++.+++.| + .+...+.+.-|
T Consensus 139 ~-~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt-~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i-~~~s~iIvG~G 215 (290)
T PRK12928 139 T-GIEVLTPDFWGGQRERLATVLAAKPDVFNHNLET-VPRLQKAVRRGADYQRSLDLLARAKELAPDI-PTKSGLMLGLG 215 (290)
T ss_pred C-EEEEeccccccCCHHHHHHHHHcCchhhcccCcC-cHHHHHHhCCCCCHHHHHHHHHHHHHhCCCc-eecccEEEeCC
Confidence 4 5665554322 3567888999988777766777 4889999998888999999999999998 6 55555555557
Q ss_pred CChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHHH
Q 015808 239 FNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEML 283 (400)
Q Consensus 239 ~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~~ 283 (400)
++.+++.+.++++++.+++ +...+|++.....+.....++++++-
T Consensus 216 ET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~ 261 (290)
T PRK12928 216 ETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFE 261 (290)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHH
Confidence 7889999999999999986 44557777666666666677766553
No 95
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.55 E-value=1.5e-12 Score=121.56 Aligned_cols=189 Identities=17% Similarity=0.221 Sum_probs=143.8
Q ss_pred EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccc----hhhHHHHHHHhhhc-
Q 015808 87 LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTV----RKDIEEACFHLSKL- 160 (400)
Q Consensus 87 l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll----~~~l~~~i~~~~~~- 160 (400)
..+.++++|+.+|.||...... .....+.+++.+.++.+.+.|++.|.|+||+ +-+ ...+.++++.+++.
T Consensus 65 tfm~i~~gC~~~C~FC~v~~~r----g~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~ 140 (302)
T TIGR00510 65 TFMILGDICTRRCPFCDVAHGR----NPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKL 140 (302)
T ss_pred EEEecCcCcCCCCCcCCccCCC----CCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcC
Confidence 3456899999999999986431 2233578999999999999999999999976 322 23488999999874
Q ss_pred CCCceEEEEecCcc-hhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEEEEEec
Q 015808 161 KGLKTLAMTTNGLT-LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMR 237 (400)
Q Consensus 161 ~g~~~~~i~TNG~l-l~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~~v~~ 237 (400)
.++ .+.+.|.-.. ..+.+..++++|.+.+..-+++. +..+..+++..++++.++.++.+++. |+ .+...+.+.-
T Consensus 141 p~i-~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi-~~~TgiIVGl 217 (302)
T TIGR00510 141 PNI-KIETLVPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNL-PTKSGIMVGL 217 (302)
T ss_pred CCC-EEEEeCCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCC-eecceEEEEC
Confidence 455 5666553211 34567889999999999999986 88999999888899999999999998 66 5666666655
Q ss_pred CCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHH
Q 015808 238 GFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEM 282 (400)
Q Consensus 238 ~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~ 282 (400)
|++.+++.+.++++++.|++ +.+.+|+......+.....++++++
T Consensus 218 GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f 263 (302)
T TIGR00510 218 GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEF 263 (302)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHH
Confidence 78999999999999999996 4555666655555555566666544
No 96
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.54 E-value=7.9e-13 Score=132.66 Aligned_cols=181 Identities=16% Similarity=0.229 Sum_probs=142.5
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC--CCCEEEEECCCccchhh-HHHHHHHhhhcCC
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTS--GVDKIRLTGGEPTVRKD-IEEACFHLSKLKG 162 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~--g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g 162 (400)
++.+..+.+|+.+|.||....... ....+..+.+.+.+.++.+.+. ++..|.|.++.++.+++ +.++++.+++. +
T Consensus 197 ~~~i~tsRGCp~~C~FC~~~~~~~-g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~-~ 274 (472)
T TIGR03471 197 YISLYTGRGCPSKCTFCLWPQTVG-GHRYRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPL-G 274 (472)
T ss_pred eEEEEecCCCCCCCCCCCCCccCC-CCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhc-C
Confidence 567888999999999997643211 1233456889988888877664 68889998888877655 78888888874 6
Q ss_pred CceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEe-cCCCh
Q 015808 163 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFND 241 (400)
Q Consensus 163 ~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~-~~~n~ 241 (400)
+ .+...+...+-.+.++.+.++|+..|.+.+++.+++..+.++++.+.+.+.+.++.++++|+ .+.+.+++. +|.+.
T Consensus 275 i-~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi-~v~~~~IiGlPget~ 352 (472)
T TIGR03471 275 V-TWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGI-KVHGTFILGLPGETR 352 (472)
T ss_pred c-eEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCC-eEEEEEEEeCCCCCH
Confidence 6 55555555444566789999999999999999999999999877779999999999999999 788777664 78899
Q ss_pred hHHHHHHHHHHhCCCe-EEEEeeecCCCCC
Q 015808 242 DEICDFVELTRDRPIN-IRFIEFMPFDGNV 270 (400)
Q Consensus 242 ~el~~l~~~~~~~gv~-~~~~~~~p~~~~~ 270 (400)
+++.+.++++.+++++ +.+..+.|+.|++
T Consensus 353 e~~~~ti~~~~~l~~~~~~~~~l~P~PGT~ 382 (472)
T TIGR03471 353 ETIRKTIDFAKELNPHTIQVSLAAPYPGTE 382 (472)
T ss_pred HHHHHHHHHHHhcCCCceeeeecccCCCcH
Confidence 9999999999998875 4455566776653
No 97
>PLN02428 lipoic acid synthase
Probab=99.54 E-value=1.5e-12 Score=122.78 Aligned_cols=188 Identities=19% Similarity=0.254 Sum_probs=144.4
Q ss_pred EEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchh-----hHHHHHHHhhhcC-C
Q 015808 89 ISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK-----DIEEACFHLSKLK-G 162 (400)
Q Consensus 89 i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~-----~l~~~i~~~~~~~-g 162 (400)
+.++++|+.+|.||...... .....+.+++.++++.+.+.|++.|.|++|.-..++ .+.++++.+++.. +
T Consensus 106 milg~gCtr~CrFCav~~~~----~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~ 181 (349)
T PLN02428 106 MILGDTCTRGCRFCAVKTSR----TPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPE 181 (349)
T ss_pred EEecCCCCCCCCCCcCCCCC----CCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCC
Confidence 46799999999999986532 234566888888898888999999999998632223 4788899888742 3
Q ss_pred CceEEEEecCcch-hhhHHHHHHcCCCeEEEecCCCCHHHHHHhh-cCCCHHHHHHHHHHHHHc--CCCcEEEEEEEecC
Q 015808 163 LKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT-RRKGHEKVMESINAAIEV--GYNPVKVNCVVMRG 238 (400)
Q Consensus 163 ~~~~~i~TNG~ll-~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir-~~~~~~~v~~~i~~l~~~--g~~~v~i~~~v~~~ 238 (400)
+ .+.+.|-+.+. .+.+..|+++|++.++..+++ .+..++.++ ...+|++.++.++.+++. |+ .+...+++.-|
T Consensus 182 i-~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi-~tkSg~MvGLG 258 (349)
T PLN02428 182 I-LVEALVPDFRGDLGAVETVATSGLDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGL-LTKTSIMLGLG 258 (349)
T ss_pred c-EEEEeCccccCCHHHHHHHHHcCCCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeEEEecC
Confidence 4 45555444433 466799999999999999998 588999998 566799999999999999 88 66666666667
Q ss_pred CChhHHHHHHHHHHhCCCeEEEE-eeecCCCCCCcccCCCCHHHHH
Q 015808 239 FNDDEICDFVELTRDRPINIRFI-EFMPFDGNVWNVKKLVPYAEML 283 (400)
Q Consensus 239 ~n~~el~~l~~~~~~~gv~~~~~-~~~p~~~~~~~~~~~~~~~e~~ 283 (400)
++.+++.++++++++.++++..+ +|+......+....+++++++-
T Consensus 259 ET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~ 304 (349)
T PLN02428 259 ETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFE 304 (349)
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHH
Confidence 89999999999999999975444 6665555556666777776653
No 98
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.53 E-value=1.7e-12 Score=128.68 Aligned_cols=191 Identities=16% Similarity=0.287 Sum_probs=144.7
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch------hhHHHHHHHhhh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR------KDIEEACFHLSK 159 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~------~~l~~~i~~~~~ 159 (400)
...+.++.+||.+|.||..+... ...+..+.+.+.+.++.+.+.|++.|.|+|...+.+ ..+.++++.+.+
T Consensus 147 ~a~v~i~rGC~~~CsFC~~p~~~---g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~ 223 (437)
T PRK14331 147 CAYVTVMRGCDKKCTYCVVPKTR---GKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAE 223 (437)
T ss_pred EEEEEeccCcCCCCccCCcccCC---CCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhc
Confidence 45677789999999999876422 234567899999999988889999999999777654 347788888876
Q ss_pred cCCCceEEEEe-cCcchh-hhHHHHHHc--CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEEE
Q 015808 160 LKGLKTLAMTT-NGLTLA-RKLPKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC 233 (400)
Q Consensus 160 ~~g~~~~~i~T-NG~ll~-~~~~~l~~~--g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~ 233 (400)
..++..+.+.+ +...++ +.++.+.+. ++..+.+++++.+++..+.+++..+.+.+.+.++.+++. |+ .+...+
T Consensus 224 ~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi-~i~~d~ 302 (437)
T PRK14331 224 IDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDI-TFSTDI 302 (437)
T ss_pred CCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCC-EEecCE
Confidence 55654566554 333344 445666666 488999999999999999998877899999999999998 66 555544
Q ss_pred EE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCccc-CCCCHH
Q 015808 234 VV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVK-KLVPYA 280 (400)
Q Consensus 234 ~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~-~~~~~~ 280 (400)
.+ .||++.+++.+.++++.+.+++ +..+.|.|..+++.... ..++.+
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~ 352 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDE 352 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHH
Confidence 44 4888999999999999998875 45567888888765442 234443
No 99
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.53 E-value=1.3e-12 Score=129.48 Aligned_cols=192 Identities=15% Similarity=0.272 Sum_probs=144.5
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECC------Cccch-hhHHHHHHHh
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGG------EPTVR-KDIEEACFHL 157 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GG------EPll~-~~l~~~i~~~ 157 (400)
.+..+.++.+||++|.||..+... ...+..+.+.+.+.++.+.+.|++.|.|+|. ..+-. ..+.++++.+
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~---g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 215 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYAR---GRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLREL 215 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceeccc---CCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHH
Confidence 456788999999999999876432 2455678999999999998889999999873 33322 3488888888
Q ss_pred hhcCCCceEEEEe-cCcchh-hhHHHHHHcC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcC--CCcEEE
Q 015808 158 SKLKGLKTLAMTT-NGLTLA-RKLPKLKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG--YNPVKV 231 (400)
Q Consensus 158 ~~~~g~~~~~i~T-NG~ll~-~~~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g--~~~v~i 231 (400)
.+..++..+.+.+ +...++ +.+..+.+++ +..+.+++++.+++..+.+++..+.+.+.+.++.+++.| + .+..
T Consensus 216 ~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i-~i~~ 294 (429)
T TIGR00089 216 SKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDA-AITT 294 (429)
T ss_pred hcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCC-EEEe
Confidence 7754554566654 454454 4456666664 789999999999999999988777999999999999998 4 4444
Q ss_pred EEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCccc-CCCCHH
Q 015808 232 NCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVK-KLVPYA 280 (400)
Q Consensus 232 ~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~-~~~~~~ 280 (400)
.+++ .||.+.+++.+.++++.+.+++ +.+..|.|..+++...- ..++.+
T Consensus 295 ~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~ 346 (429)
T TIGR00089 295 DIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEE 346 (429)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchhhCCCCCCHH
Confidence 4444 4778999999999999998874 66778888888776532 234433
No 100
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.52 E-value=2.7e-12 Score=126.43 Aligned_cols=191 Identities=18% Similarity=0.273 Sum_probs=142.7
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch----------hhHHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR----------KDIEEACF 155 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~----------~~l~~~i~ 155 (400)
...|.++.+||.+|.||..+... ......+.+++.+.++.+.+.|++.|.|+|-.-..+ .++.++++
T Consensus 128 ~a~i~isrGC~~~CsFC~ip~~r---G~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~ 204 (420)
T PRK14339 128 KSLVNISIGCDKKCTYCIVPHTR---GKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLD 204 (420)
T ss_pred EEEEEecCCCCCCCCcCCccccc---CCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHH
Confidence 56788999999999999877532 223346899999999988889999999988554321 24788888
Q ss_pred HhhhcCCCceEEEE-ecCcchhhh-HHHHHHc--CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcE
Q 015808 156 HLSKLKGLKTLAMT-TNGLTLARK-LPKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPV 229 (400)
Q Consensus 156 ~~~~~~g~~~~~i~-TNG~ll~~~-~~~l~~~--g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v 229 (400)
.+.+..|+..+.+. ++...++++ ++.+.+. ++..+.+.+++.+++..+.++++.+.+.+++.++.+++. ++ .+
T Consensus 205 ~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i-~i 283 (420)
T PRK14339 205 KLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEV-SI 283 (420)
T ss_pred HHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCC-EE
Confidence 88765565445653 455445544 4666665 478999999999999999998888899999999999998 44 33
Q ss_pred EEEEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc-cCCCCHH
Q 015808 230 KVNCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV-KKLVPYA 280 (400)
Q Consensus 230 ~i~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~-~~~~~~~ 280 (400)
...+.+ .||.+.+++.+.++++.+.+++ +..+.|.|..|++... ...++.+
T Consensus 284 ~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~~~~v~~~ 337 (420)
T PRK14339 284 STDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKNQVDEE 337 (420)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhCCCCCCHH
Confidence 343333 3778999999999999998875 6666899998887443 3445544
No 101
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=99.52 E-value=5.1e-14 Score=119.33 Aligned_cols=112 Identities=14% Similarity=0.181 Sum_probs=80.0
Q ss_pred hhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCC-CCEEEEECCCccchh---hHH
Q 015808 76 LIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRK---DIE 151 (400)
Q Consensus 76 ~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g-~~~i~~~GGEPll~~---~l~ 151 (400)
+++..|.+. + +. ..+||++|+||+.+..+.. .....++.+++.++++.+.+.+ +..|+|+|||||+++ .+.
T Consensus 10 ~~dG~G~r~--~-if-~~gCnl~C~~C~n~~~~~~-~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPllq~~~~~l~ 84 (154)
T TIGR02491 10 IVNGEGIRV--S-LF-VAGCKHHCEGCFNKETWNF-NGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPLYPRNVEELI 84 (154)
T ss_pred eecCCCcEE--E-EE-ECCCCCCCcCCCcccccCC-CCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhCCCCCHHHHH
Confidence 456666433 2 22 3889999999998765432 2356799888888888887765 678999999999976 478
Q ss_pred HHHHHhhhcCCCceEEEEecCcchhhhHH-----HHHHcCCCeEEEecCCC
Q 015808 152 EACFHLSKLKGLKTLAMTTNGLTLARKLP-----KLKESGLTSVNISLDTL 197 (400)
Q Consensus 152 ~~i~~~~~~~g~~~~~i~TNG~ll~~~~~-----~l~~~g~~~i~iSldg~ 197 (400)
++++++++..++ ...+.|||+...+.+. .+++. ++ + -+||.
T Consensus 85 ~ll~~~k~~~~~-~~~~~~tG~~~~~~~~~~~~~~~l~~-~D-~--liDgk 130 (154)
T TIGR02491 85 ELVKKIKAEFPE-KDIWLWTGYTWEEILEDEKHLEVLKY-ID-V--LVDGK 130 (154)
T ss_pred HHHHHHHHhCCC-CCEEEeeCccHHHHhcchhHHHHHhh-CC-E--EEech
Confidence 889988875455 4566799998866543 45543 55 3 36663
No 102
>PRK05481 lipoyl synthase; Provisional
Probab=99.52 E-value=4.1e-12 Score=118.68 Aligned_cols=171 Identities=21% Similarity=0.321 Sum_probs=134.7
Q ss_pred EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC----ccch-hhHHHHHHHhhhc-
Q 015808 87 LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE----PTVR-KDIEEACFHLSKL- 160 (400)
Q Consensus 87 l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE----Pll~-~~l~~~i~~~~~~- 160 (400)
..+.+|++|+.+|.||..+... ...++.+++.+.++++.+.|++.|.|+||+ |... ..+.++++.+++.
T Consensus 55 ~fi~is~GC~~~C~FC~i~~~r-----~~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~ 129 (289)
T PRK05481 55 TFMILGDICTRRCPFCDVATGR-----PLPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELN 129 (289)
T ss_pred EEEEecccccCCCCCceeCCCC-----CCCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhC
Confidence 3345899999999999876531 245899999999999999999999999987 3222 3578899888873
Q ss_pred CCCceEEEEe-cCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEEEEEec
Q 015808 161 KGLKTLAMTT-NGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMR 237 (400)
Q Consensus 161 ~g~~~~~i~T-NG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~~v~~ 237 (400)
.++ .+.+.| +.....+.+..++++|...+..-+++ .++.++.++++.+++..++.++.+++. |+ .+...+.+.-
T Consensus 130 p~i-rI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~et-s~~vlk~m~r~~t~e~~le~i~~ar~~~pgi-~~~t~~IvGf 206 (289)
T PRK05481 130 PGT-TIEVLIPDFRGRMDALLTVLDARPDVFNHNLET-VPRLYKRVRPGADYERSLELLKRAKELHPGI-PTKSGLMVGL 206 (289)
T ss_pred CCc-EEEEEccCCCCCHHHHHHHHhcCcceeeccccC-hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCC-eEeeeeEEEC
Confidence 455 566555 33334578899999998777777776 478899998877899999999999999 88 7766666655
Q ss_pred CCChhHHHHHHHHHHhCCCe-EEEEeeec
Q 015808 238 GFNDDEICDFVELTRDRPIN-IRFIEFMP 265 (400)
Q Consensus 238 ~~n~~el~~l~~~~~~~gv~-~~~~~~~p 265 (400)
|++.+++.+.++++++.+++ +..+.|.|
T Consensus 207 GET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 207 GETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 78889999999999999985 55567777
No 103
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.51 E-value=4.1e-12 Score=125.93 Aligned_cols=191 Identities=14% Similarity=0.226 Sum_probs=144.4
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchh----hHHHHHHHhhhcC
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK----DIEEACFHLSKLK 161 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~----~l~~~i~~~~~~~ 161 (400)
...+.++.+||.+|+||..+... .+.+..+.+++.+.++.+.+.|++.|.|+|.+-+.+. +|.++++.+.+..
T Consensus 155 ~a~l~isrGC~~~CsFC~ip~~r---G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~ 231 (449)
T PRK14332 155 QAFVTIMRGCNNFCTFCVVPYTR---GRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDET 231 (449)
T ss_pred eEEEEecCCcCCCCCCCCccccc---CCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCC
Confidence 34567789999999999876422 3346678999999999999999999999987766652 3778887776654
Q ss_pred CCceEEEEe-cCcchhhh-HHHHHHcC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE--
Q 015808 162 GLKTLAMTT-NGLTLARK-LPKLKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-- 235 (400)
Q Consensus 162 g~~~~~i~T-NG~ll~~~-~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v-- 235 (400)
++..+.+.+ |...+++. +..+.+.+ +..+.+.+++.+++..+.++++.+.+.+.+.++.+++... .+.+.+.+
T Consensus 232 ~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p-~i~i~td~Iv 310 (449)
T PRK14332 232 TIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP-DVGITTDIIV 310 (449)
T ss_pred CcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC-CCEEEEEEEe
Confidence 554555544 44445544 46666776 7799999999999999999887789999999999999843 44544433
Q ss_pred -ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc--cCCCCHH
Q 015808 236 -MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV--KKLVPYA 280 (400)
Q Consensus 236 -~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~--~~~~~~~ 280 (400)
.||++.+++.++++++.+.+++ +..+.|.|..|++... ...++.+
T Consensus 311 GfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~ 359 (449)
T PRK14332 311 GFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEE 359 (449)
T ss_pred eCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHH
Confidence 3778999999999999999985 5677899988886642 3345544
No 104
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.51 E-value=3.2e-13 Score=122.41 Aligned_cols=158 Identities=23% Similarity=0.356 Sum_probs=119.7
Q ss_pred EEEEcCcccCCCCCCCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhc
Q 015808 87 LRISLTERCNLRCHYCMPPEGVDL-----TPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKL 160 (400)
Q Consensus 87 l~i~iT~~CNl~C~yC~~~~~~~~-----~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~ 160 (400)
+.|.+|..||..|.||+....... .+....-+.+++...+..+. ...+.++||||++.-+ ..++++.+++.
T Consensus 30 lVlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~---a~GasiTGGdPl~~ieR~~~~ir~LK~e 106 (353)
T COG2108 30 LVLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMD---ALGASITGGDPLLEIERTVEYIRLLKDE 106 (353)
T ss_pred eEEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhc---cccccccCCChHHHHHHHHHHHHHHHHh
Confidence 568899999999999998642210 11122234555555555444 4559999999999866 78888888876
Q ss_pred CCCc-eEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecC
Q 015808 161 KGLK-TLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRG 238 (400)
Q Consensus 161 ~g~~-~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~ 238 (400)
.|-. ++++.|+|.+.+ +.++.|.++|+|.|.+..+-+ .+ ...++.+++|+.+++.|. .+++.+..+||
T Consensus 107 fG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~-~~--------~~~e~~i~~l~~A~~~g~-dvG~EiPaipg 176 (353)
T COG2108 107 FGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRP-GS--------KSSEKYIENLKIAKKYGM-DVGVEIPAIPG 176 (353)
T ss_pred hccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCc-cc--------cccHHHHHHHHHHHHhCc-cceeecCCCcc
Confidence 5432 789999999986 556999999999999998722 11 236899999999999999 99999999986
Q ss_pred CChhHHHHHHHHHHhCCCeE
Q 015808 239 FNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 239 ~n~~el~~l~~~~~~~gv~~ 258 (400)
-.+.+.++++++.+.++++
T Consensus 177 -~e~~i~e~~~~~~~~~~~F 195 (353)
T COG2108 177 -EEEAILEFAKALDENGLDF 195 (353)
T ss_pred -hHHHHHHHHHHHHhcccce
Confidence 5567889999999988654
No 105
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.51 E-value=1.5e-12 Score=126.90 Aligned_cols=178 Identities=17% Similarity=0.271 Sum_probs=133.2
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHh-C-----CCCEEEEECCCccch--hhHHHHHHHhhhc
Q 015808 93 ERCNLRCHYCMPPEGVDLTPKPQLLS----LNEILRLAYLFVT-S-----GVDKIRLTGGEPTVR--KDIEEACFHLSKL 160 (400)
Q Consensus 93 ~~CNl~C~yC~~~~~~~~~~~~~~~s----~e~i~~ii~~~~~-~-----g~~~i~~~GGEPll~--~~l~~~i~~~~~~ 160 (400)
.-|+.+|.||........ .....-+ .+.+.+.++...+ . .+..|.|.||.|++- .++.++++.+++.
T Consensus 10 PFC~~~C~yC~f~~~~~~-~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~ 88 (375)
T PRK05628 10 PFCATRCGYCDFNTYTAA-ELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLARVLDAVRDT 88 (375)
T ss_pred CCcCCcCCCCCCCccccc-ccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHHHHHHHHHHHHHh
Confidence 369999999987542211 1000122 3444444443332 2 367899999999863 4588999888874
Q ss_pred CCCc---eEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE-
Q 015808 161 KGLK---TLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV- 235 (400)
Q Consensus 161 ~g~~---~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v- 235 (400)
.++. .+++.+|+..++ +.+..|.+.|++.|.+++++.+++..+.+.+..+.+.+.++++.+++.|+..+.+.+++
T Consensus 89 ~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~G 168 (375)
T PRK05628 89 FGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYG 168 (375)
T ss_pred CCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 3331 578888988775 66789999999999999999999999999988889999999999999999448888777
Q ss_pred ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCC
Q 015808 236 MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVW 271 (400)
Q Consensus 236 ~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~ 271 (400)
.||++.+++.+.++++.+++++ +.+..+.+..++++
T Consensus 169 lPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l 205 (375)
T PRK05628 169 TPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTAL 205 (375)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChH
Confidence 4889999999999999998884 55666666666544
No 106
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.51 E-value=2.7e-12 Score=126.47 Aligned_cols=207 Identities=18% Similarity=0.249 Sum_probs=150.4
Q ss_pred hhcCCC-ccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccc-hhh-HHHH
Q 015808 78 DSFGRM-HTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTV-RKD-IEEA 153 (400)
Q Consensus 78 ~~~~~~-~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll-~~~-l~~~ 153 (400)
..||++ ..+..|++|+.|..+|.||.+..... ......++.|++.+.+..+.+.|+..+.+.+|| |.- ..+ +.++
T Consensus 76 ~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n~-~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~ 154 (469)
T PRK09613 76 KIYGNRIVLFAPLYISNYCVNNCVYCGFRRSNK-EIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILES 154 (469)
T ss_pred HHcCCEEEEEEeccccCCCCCCCccCCCccCCC-CCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHH
Confidence 346776 44677889999999999998875432 123457999999999999999999999998877 322 222 5677
Q ss_pred HHHhhhcC---C-CceEEEEecCcch-hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcC---CCHHHHHHHHHHHHHcC
Q 015808 154 CFHLSKLK---G-LKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVG 225 (400)
Q Consensus 154 i~~~~~~~---g-~~~~~i~TNG~ll-~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g 225 (400)
++.+++.. | +. .+..|...+ .+.+..|+++|++.+.+-.++.++++|..++.. .+|+.-+++++.+.++|
T Consensus 155 i~~I~~~~~~~g~i~--~v~inig~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aG 232 (469)
T PRK09613 155 IKTIYSTKHGNGEIR--RVNVNIAPTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAG 232 (469)
T ss_pred HHHHHHhccccCcce--eeEEEeecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777531 2 22 234454445 588999999999999999999999999998753 34999999999999999
Q ss_pred CCcEEEEEEEecCCChhHHHHHHHHHHhC----CCe---EEEEeeecCCCCCCccc-CCCCHHHHHHHHH
Q 015808 226 YNPVKVNCVVMRGFNDDEICDFVELTRDR----PIN---IRFIEFMPFDGNVWNVK-KLVPYAEMLDTVV 287 (400)
Q Consensus 226 ~~~v~i~~~v~~~~n~~el~~l~~~~~~~----gv~---~~~~~~~p~~~~~~~~~-~~~~~~e~~~~i~ 287 (400)
++.|.+...+.-+....|..+++..+..+ |++ +.+..+.|..|+++... ..++..++++.+.
T Consensus 233 i~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA 302 (469)
T PRK09613 233 IDDVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVA 302 (469)
T ss_pred CCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHH
Confidence 94488888775554555655555444443 442 45566888888877443 3577777766654
No 107
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.51 E-value=1.1e-12 Score=124.78 Aligned_cols=197 Identities=23% Similarity=0.266 Sum_probs=143.1
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccch-----------------
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR----------------- 147 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll~----------------- 147 (400)
...|++|+.|+.+|.||....... ......++.|++.+.++++.+.|+..|.++||+ |-..
T Consensus 5 n~~i~~tn~C~~~C~fCaf~~~~g-~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 5 NVFIPLTRLCRNRCGYCTFRRPPG-ELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred eEEeccccCcCCCCccCCccccCC-CcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHH
Confidence 456889999999999999865422 123447999999999999999999999999888 4332
Q ss_pred hhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhh----cCCCHHHHHHHHHHHHH
Q 015808 148 KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLT----RRKGHEKVMESINAAIE 223 (400)
Q Consensus 148 ~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir----~~~~~~~v~~~i~~l~~ 223 (400)
..+.++++.+++..++ ... .+-|.+-.+.+..|+++|+. +.+++++.++..++.++ ..+.++..++.++.+.+
T Consensus 84 ~~~~~~~~~i~~e~~~-~~~-~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~ 160 (322)
T TIGR03550 84 EYLRELCELALEETGL-LPH-TNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGR 160 (322)
T ss_pred HHHHHHHHHHHHhcCC-ccc-cCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 2256667777654344 223 23344446778999999874 67888887665444333 23358889999999999
Q ss_pred cCCCcEEEEEEEecCCChhHHHHHHHHHHhCC-----C-eEEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 015808 224 VGYNPVKVNCVVMRGFNDDEICDFVELTRDRP-----I-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 287 (400)
Q Consensus 224 ~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~g-----v-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 287 (400)
.|+ ++...+.+..|++.+++.+.+.+++++. + .+....|.|..+++.......+..+.++.+.
T Consensus 161 ~Gi-~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iA 229 (322)
T TIGR03550 161 LKI-PFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVA 229 (322)
T ss_pred cCC-CccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHH
Confidence 999 8888888877888899988888887754 4 3445677888777776556677777777554
No 108
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.50 E-value=5.8e-12 Score=124.01 Aligned_cols=183 Identities=14% Similarity=0.198 Sum_probs=141.3
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch-------hhHHHHHHHhh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-------KDIEEACFHLS 158 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~-------~~l~~~i~~~~ 158 (400)
...+.++.+||.+|+||..+... ......+.+++.+.++.+.+.|++.|.|+|..-..+ +.+.++++.+.
T Consensus 125 ~a~i~i~rGC~~~CsFC~ip~~r---G~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~ 201 (418)
T PRK14336 125 SANVTIMQGCDNFCTYCVVPYRR---GREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALH 201 (418)
T ss_pred EEEEEeccCCCCCCccCCccccC---CCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHH
Confidence 45677789999999999876422 234668899999999999889999999998775442 34788888887
Q ss_pred hcCCCceEEEEe-cCcchh-hhHHHHHHc--CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEE
Q 015808 159 KLKGLKTLAMTT-NGLTLA-RKLPKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVN 232 (400)
Q Consensus 159 ~~~g~~~~~i~T-NG~ll~-~~~~~l~~~--g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~ 232 (400)
+..++..+.+.+ +...++ +.++.+.+. ++..+.+.+++.+++..+.+++..+.+.+.+.++.+++. |+ .+...
T Consensus 202 ~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi-~i~~d 280 (418)
T PRK14336 202 DIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDI-SLQTD 280 (418)
T ss_pred hcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC-EEEEE
Confidence 755554565543 444444 444656653 478999999999999999998877899999999999998 76 55555
Q ss_pred EEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCc
Q 015808 233 CVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWN 272 (400)
Q Consensus 233 ~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~ 272 (400)
+.+ .||.+.+++.+.++++.+.+++ +.+..|.|..|++..
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~ 322 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAA 322 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhH
Confidence 555 4788999999999999998875 566778888887655
No 109
>PRK08444 hypothetical protein; Provisional
Probab=99.49 E-value=2.6e-12 Score=122.89 Aligned_cols=208 Identities=19% Similarity=0.228 Sum_probs=153.1
Q ss_pred hhcCCCccEE---EEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccchhh-HHH
Q 015808 78 DSFGRMHTYL---RISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEE 152 (400)
Q Consensus 78 ~~~~~~~~~l---~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll~~~-l~~ 152 (400)
+.+|+.+.+. .|++|+.|..+|.||.+...... .....|+.|++.+.+.++.+.|+..|.+.||+ |.+..+ +.+
T Consensus 39 ~~~G~~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~-~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e 117 (353)
T PRK08444 39 KLHGKKVYFNVNRHINPTNICADVCKFCAFSAHRKN-PNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLE 117 (353)
T ss_pred HhcCCEEEEEecCCcccccccccCCccCCCccCCCC-CccccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHH
Confidence 4467777654 48889999999999998754332 23356999999999999999999999999864 655433 578
Q ss_pred HHHHhhhc-CCCceEEEE----------ecCcchhhhHHHHHHcCCCeEEE-ecCCCCHHHHHHhhcCCC-HHHHHHHHH
Q 015808 153 ACFHLSKL-KGLKTLAMT----------TNGLTLARKLPKLKESGLTSVNI-SLDTLVPAKFEFLTRRKG-HEKVMESIN 219 (400)
Q Consensus 153 ~i~~~~~~-~g~~~~~i~----------TNG~ll~~~~~~l~~~g~~~i~i-Sldg~~~~~~~~ir~~~~-~~~v~~~i~ 219 (400)
+++.+++. +++ .+... +.|....+.+..|+++|++.+.- +.+-++++.+..+...+. .++.++.++
T Consensus 118 ~ir~Ik~~~p~i-~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~ 196 (353)
T PRK08444 118 IFKKIKEAYPNL-HVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHK 196 (353)
T ss_pred HHHHHHHHCCCc-eEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHH
Confidence 88888874 234 34432 35556678889999999987654 455556777788877665 588888889
Q ss_pred HHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecC----CCCCCcccCCCCHHHHHHHHHH
Q 015808 220 AAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPF----DGNVWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 220 ~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~----~~~~~~~~~~~~~~e~~~~i~~ 288 (400)
.+.++|+ ++...+.+.-+++.++..+.+..++++..+ .-|..|+|. .++++......+..+.++.+.-
T Consensus 197 ~a~~~Gi-~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi 269 (353)
T PRK08444 197 YWHKKGK-MSNATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAI 269 (353)
T ss_pred HHHHcCC-CccceeEEecCCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHH
Confidence 9999999 887777777778888888888888887664 335556665 4566655556777777776543
No 110
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.49 E-value=6.4e-12 Score=124.49 Aligned_cols=183 Identities=12% Similarity=0.180 Sum_probs=140.2
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch------hhHHHHHHHhhh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR------KDIEEACFHLSK 159 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~------~~l~~~i~~~~~ 159 (400)
...+.++.+||.+|+||..+... ...+..+.+++.+.++.+.+.|++.|.|+|.....+ .++.++++.+.+
T Consensus 150 ~a~l~isrGC~~~CsFC~ip~~r---G~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~ 226 (445)
T PRK14340 150 SAFVPVMRGCNNMCAFCVVPFTR---GRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSR 226 (445)
T ss_pred EEEEEeccCCCCCCCCCCccccc---CCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhh
Confidence 45678899999999999876422 344667899999999999899999999998665533 347788888765
Q ss_pred cCCCceEEEEe-cCcchh-hhHHHHHHc--CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEEE
Q 015808 160 LKGLKTLAMTT-NGLTLA-RKLPKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC 233 (400)
Q Consensus 160 ~~g~~~~~i~T-NG~ll~-~~~~~l~~~--g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~ 233 (400)
..+...+.+.+ +...++ +.++.+.+. ++.++.+.+++.+++..+.++++.+.+.+.+.++.+++. |+ .+...+
T Consensus 227 ~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi-~i~td~ 305 (445)
T PRK14340 227 AAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGV-TLSTDL 305 (445)
T ss_pred cCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEeccE
Confidence 32222455543 333344 444666664 688999999999999999998877899999999999998 77 555555
Q ss_pred EE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCc
Q 015808 234 VV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWN 272 (400)
Q Consensus 234 ~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~ 272 (400)
.+ .||.+.+++.+.++++++.+++ +.++.|.|..|++..
T Consensus 306 IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~ 346 (445)
T PRK14340 306 IAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAA 346 (445)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhh
Confidence 44 4888999999999999998874 566788999888755
No 111
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.49 E-value=4.7e-12 Score=125.61 Aligned_cols=184 Identities=16% Similarity=0.262 Sum_probs=140.2
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch---------hhHHHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR---------KDIEEACFH 156 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~---------~~l~~~i~~ 156 (400)
...+.++++||.+|+||..+... ......+.+++.+.++.+.+.|++.|.|+|.....+ ..+.++++.
T Consensus 146 ~~~v~i~rGC~~~CsfC~~~~~~---G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~ 222 (438)
T TIGR01574 146 KSFINIMIGCNKFCTYCIVPYTR---GDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRE 222 (438)
T ss_pred eEEeehhcCCCCCCCCCCeeeec---CCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHH
Confidence 46688899999999999876422 233567899999999999999999999988554443 247788888
Q ss_pred hhhcCCCceEEEE-ecCcchh-hhHHHHHHcC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEE-
Q 015808 157 LSKLKGLKTLAMT-TNGLTLA-RKLPKLKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV- 231 (400)
Q Consensus 157 ~~~~~g~~~~~i~-TNG~ll~-~~~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i- 231 (400)
+.+..++..+.+. .+...++ +.+..+.+.| +..+.+++++.+++..+.++++.+.+.+.+.++.+++.+. .+.+
T Consensus 223 l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~-~i~i~ 301 (438)
T TIGR01574 223 LSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACP-NVSIS 301 (438)
T ss_pred HHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCeEe
Confidence 8765566445543 3444454 5557777777 7899999999999999998887789999999999998843 3344
Q ss_pred -EEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc
Q 015808 232 -NCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV 273 (400)
Q Consensus 232 -~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~ 273 (400)
.+.+ .||.+.+++.+.++++.+.+++ +.++.|.|..|++...
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~ 346 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAAD 346 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhh
Confidence 3333 4778899999999999998874 6667888888877654
No 112
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.49 E-value=8.9e-12 Score=124.02 Aligned_cols=191 Identities=14% Similarity=0.229 Sum_probs=142.6
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch---------hhHHHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR---------KDIEEACFH 156 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~---------~~l~~~i~~ 156 (400)
+..+.++.+||.+|+||..+... ......+.+++.+.++.+.+.|++.|.|+|.....+ ..+.++++.
T Consensus 153 ~~~i~I~rGC~~~CsfC~~p~~r---G~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~ 229 (455)
T PRK14335 153 QSFIPIMNGCNNFCSYCIVPYVR---GREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRH 229 (455)
T ss_pred eEEEEhhcCCCCCCCCCCcccCC---CCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHH
Confidence 45567789999999999876432 223457899999999999889999999988665443 136777777
Q ss_pred hh----hcCCCceEEE-EecCcchhhhH-HHHHH--cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CC
Q 015808 157 LS----KLKGLKTLAM-TTNGLTLARKL-PKLKE--SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GY 226 (400)
Q Consensus 157 ~~----~~~g~~~~~i-~TNG~ll~~~~-~~l~~--~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~ 226 (400)
+. ...++..+.+ .++...+++.+ +.+.+ .|+..+.+.+++.+++..+.+.+..+.+.+.+.++.+++. |+
T Consensus 230 l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi 309 (455)
T PRK14335 230 IVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNV 309 (455)
T ss_pred HHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 63 1234544543 45666565544 55665 4789999999999999999988877799999999999998 76
Q ss_pred CcEEEEEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc-cCCCCHH
Q 015808 227 NPVKVNCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV-KKLVPYA 280 (400)
Q Consensus 227 ~~v~i~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~-~~~~~~~ 280 (400)
.+...+.+ .||.+.+++.+.++++.+.+++ +.++.|.|+.|++... ...++.+
T Consensus 310 -~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~ 365 (455)
T PRK14335 310 -ALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDE 365 (455)
T ss_pred -EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHH
Confidence 55555555 4778999999999999998884 6777899999877654 2345544
No 113
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.49 E-value=5.4e-12 Score=125.58 Aligned_cols=191 Identities=15% Similarity=0.216 Sum_probs=140.9
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch---------hhHHHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR---------KDIEEACFH 156 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~---------~~l~~~i~~ 156 (400)
+..+.++.+||++|.||..+... ......+.+++.+.++.+.+.|++.|.|+|-.-+.+ ..+.++++.
T Consensus 148 ~~~i~isrGCp~~CsFC~~p~~~---G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~ 224 (444)
T PRK14325 148 SAFVSIMEGCDKYCTFCVVPYTR---GEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRL 224 (444)
T ss_pred eEEEEhhhCCCCCCCccccCccc---CCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHH
Confidence 45677889999999999876422 223357899999999998888999998876443332 247788888
Q ss_pred hhhcCCCceEEEEe-cCcchhhh-HHHHHHcC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEE
Q 015808 157 LSKLKGLKTLAMTT-NGLTLARK-LPKLKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVK 230 (400)
Q Consensus 157 ~~~~~g~~~~~i~T-NG~ll~~~-~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~ 230 (400)
+.+..++..+.+.+ +...+++. +..+.+.+ +..+.+++++.+++..+.+++..+.+.+.+.++.++++ |+ .+.
T Consensus 225 l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi-~v~ 303 (444)
T PRK14325 225 VAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDI-AIS 303 (444)
T ss_pred HHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCC-EEE
Confidence 87655553455544 45555544 46666654 78999999999999999998877799999999999998 44 444
Q ss_pred EEEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCccc-CCCCHH
Q 015808 231 VNCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVK-KLVPYA 280 (400)
Q Consensus 231 i~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~-~~~~~~ 280 (400)
..+.+ .||.+.+++.+.++++.+.+++ +.++.|.|+.|++...- ..++.+
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~ 356 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDVPEE 356 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCCCCCHH
Confidence 44443 4788999999999999998885 55667889888776543 244543
No 114
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.48 E-value=2.9e-12 Score=124.26 Aligned_cols=177 Identities=16% Similarity=0.280 Sum_probs=133.8
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHH----HHh----CCCCEEEEECCCccchh--hHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNE-ILRLAYL----FVT----SGVDKIRLTGGEPTVRK--DIEEAC 154 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~-i~~ii~~----~~~----~g~~~i~~~GGEPll~~--~l~~~i 154 (400)
||+| .-|..+|.||...... .... ..+. +..++++ ... ..+..|.|.||.|++.+ ++.+++
T Consensus 10 YiHI---PFC~~~C~yC~f~~~~---~~~~--~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~~~~l~~ll 81 (370)
T PRK06294 10 YIHI---PFCTKKCHYCSFYTIP---YKEE--SVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVPPALIQDIL 81 (370)
T ss_pred EEEe---CCccCcCCCCcCcccC---CCcc--CHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCCHHHHHHHH
Confidence 5555 5699999999765421 1111 2222 2333333 221 23678999999999864 488999
Q ss_pred HHhhhcCCCceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 155 FHLSKLKGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 155 ~~~~~~~g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
+.+++.... .+++.+|...++ +.+..+.+.|+++|.|.+++.+++..+.+.+..+.+.++++++.+++.|+..+.+..
T Consensus 82 ~~i~~~~~~-eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dl 160 (370)
T PRK06294 82 KTLEAPHAT-EITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDL 160 (370)
T ss_pred HHHHhCCCC-eEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 988765344 799999998774 667999999999999999999999999998888899999999999999994477776
Q ss_pred EE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCC
Q 015808 234 VV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVW 271 (400)
Q Consensus 234 ~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~ 271 (400)
.+ .||++.+++.+.++++.+++++ +.+..+.+..++++
T Consensus 161 i~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l 200 (370)
T PRK06294 161 IYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSF 200 (370)
T ss_pred ecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChH
Confidence 55 3778888999999999998874 77777777776543
No 115
>PRK08445 hypothetical protein; Provisional
Probab=99.48 E-value=1e-11 Score=119.03 Aligned_cols=205 Identities=18% Similarity=0.243 Sum_probs=145.5
Q ss_pred cCCCc-cEEE---EEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCcc-chhh-HHHH
Q 015808 80 FGRMH-TYLR---ISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT-VRKD-IEEA 153 (400)
Q Consensus 80 ~~~~~-~~l~---i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl-l~~~-l~~~ 153 (400)
+|..+ .|+. |++|+.|..+|.||........ .....++.|++.+.++++.+.|...|.++||++. +..+ +.++
T Consensus 33 ~g~~v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~-~~~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l 111 (348)
T PRK08445 33 HPEKITTFIVDRNINYTNICWVDCKFCAFYRHLKE-DDAYILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENL 111 (348)
T ss_pred cCCcEEEEecccccccccccccCCccCCCccCCCC-CCCeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHH
Confidence 45544 4444 8889999999999998754322 2334689999999999999999999999998655 4444 6888
Q ss_pred HHHhhhcCC-CceEEEEec----------CcchhhhHHHHHHcCCCeEE-EecCCCCHHHHHHhhc-CCCHHHHHHHHHH
Q 015808 154 CFHLSKLKG-LKTLAMTTN----------GLTLARKLPKLKESGLTSVN-ISLDTLVPAKFEFLTR-RKGHEKVMESINA 220 (400)
Q Consensus 154 i~~~~~~~g-~~~~~i~TN----------G~ll~~~~~~l~~~g~~~i~-iSldg~~~~~~~~ir~-~~~~~~v~~~i~~ 220 (400)
++.+++... + .+.-.|- +....+.+.+|+++|++.+. +.++..++++.+.+.+ +-+.++.++.++.
T Consensus 112 ~~~Ik~~~p~i-~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~ 190 (348)
T PRK08445 112 VSHIAQKYPTI-TIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQ 190 (348)
T ss_pred HHHHHHHCCCc-EEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHH
Confidence 999987532 3 2221111 22236888999999999985 8899999999998854 4557888999999
Q ss_pred HHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe---EE--EEeeecCCCCCCccc----CCCCHHHHHHHHH
Q 015808 221 AIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN---IR--FIEFMPFDGNVWNVK----KLVPYAEMLDTVV 287 (400)
Q Consensus 221 l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~---~~--~~~~~p~~~~~~~~~----~~~~~~e~~~~i~ 287 (400)
+.++|+ ++...+.+..+.+.++..+.+..++++..+ +. ....++..+++.... ...+..+.++.+.
T Consensus 191 a~~~Gi-~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iA 265 (348)
T PRK08445 191 AHLIGM-KSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLA 265 (348)
T ss_pred HHHcCC-eeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHH
Confidence 999999 888887777777888888888888876542 12 112223355554421 2366667666654
No 116
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.47 E-value=9e-12 Score=123.66 Aligned_cols=184 Identities=12% Similarity=0.216 Sum_probs=139.1
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch-------hhHHHHHHHhh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-------KDIEEACFHLS 158 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~-------~~l~~~i~~~~ 158 (400)
...+.++.+||.+|.||..+... ...+..+.+++.+.++.+.+.|++.|.|+|..-+.+ +++.++++.+.
T Consensus 148 ~~~i~i~rGC~~~CsfC~~p~~~---g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~ 224 (439)
T PRK14328 148 KAFVTIMYGCNNFCTYCIVPYVR---GRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVN 224 (439)
T ss_pred EEEEEHHhCcCCCCCCCCccccc---CCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHH
Confidence 34578899999999999876432 233567899999999988888999999998765432 35778888887
Q ss_pred hcCCCceEEEE-ecCcchhh-hHHHHHHcC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcC--CCcEEEE
Q 015808 159 KLKGLKTLAMT-TNGLTLAR-KLPKLKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG--YNPVKVN 232 (400)
Q Consensus 159 ~~~g~~~~~i~-TNG~ll~~-~~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g--~~~v~i~ 232 (400)
+..++..+.+. .+...+++ .++.+.+.+ +..+.+.+++.+++..+.+++..+.+.+.+.++.+++.. + .+...
T Consensus 225 ~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i-~i~~d 303 (439)
T PRK14328 225 EIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDV-AITTD 303 (439)
T ss_pred hcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCC-EEEEE
Confidence 65555445553 35544544 456666664 789999999999999999888777999999999999883 3 33444
Q ss_pred EEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc
Q 015808 233 CVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV 273 (400)
Q Consensus 233 ~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~ 273 (400)
+.+ .||.+.+++.+.++++.+.+++ +.++.|.|..++++..
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~ 346 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAK 346 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhh
Confidence 444 4778899999999999998874 6667888888877653
No 117
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.46 E-value=1.7e-11 Score=122.52 Aligned_cols=190 Identities=16% Similarity=0.269 Sum_probs=142.7
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccc--------hhhHHHHHHHh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV--------RKDIEEACFHL 157 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll--------~~~l~~~i~~~ 157 (400)
...+.++.+||.+|+||..+... .+.+..+++++.+.++.+.+.|++.|.|+|..-.. ...|.++++.+
T Consensus 213 ~a~v~I~~GC~~~CsFC~vp~~r---G~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I 289 (509)
T PRK14327 213 KAWVNIMYGCDKFCTYCIVPYTR---GKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEI 289 (509)
T ss_pred EEEEEecCCCCCCCcCCcccccC---CCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHH
Confidence 56788899999999999876422 23456789999999999999999999998743222 13477888888
Q ss_pred hhcCCCceEEEEe-cCcchhhh-HHHHHHcC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 158 SKLKGLKTLAMTT-NGLTLARK-LPKLKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 158 ~~~~g~~~~~i~T-NG~ll~~~-~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
.+. ++..+.+.| +...+++. +..+.+.| +..+.+.+++.+++..+.++++.+.+.+++.++.+++.+. .+.+.+
T Consensus 290 ~~~-~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p-~i~i~t 367 (509)
T PRK14327 290 RKI-DIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIP-NVALTT 367 (509)
T ss_pred HhC-CCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CcEEee
Confidence 775 554566654 44445544 56666777 5689999999999999999888789999999999999844 445443
Q ss_pred --EE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc-cCCCCHH
Q 015808 234 --VV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV-KKLVPYA 280 (400)
Q Consensus 234 --~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~-~~~~~~~ 280 (400)
++ .||.+.+++.+.++++.+.+++ +.++.|.|..|++... ...++.+
T Consensus 368 diIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~ 419 (509)
T PRK14327 368 DIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPME 419 (509)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHH
Confidence 33 4788999999999999998885 5566788988877643 2344443
No 118
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.46 E-value=1.9e-11 Score=120.67 Aligned_cols=190 Identities=16% Similarity=0.226 Sum_probs=138.8
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch-----hhHHHHHHHhhh
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-----KDIEEACFHLSK 159 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~-----~~l~~~i~~~~~ 159 (400)
....|.++++||.+|+||..+... ...+..+.+++.+.++.+.+.|++.|.|+|.+-..+ ..+.++++.+.+
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~---G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~ 209 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHAR---GKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITE 209 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCC---CCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHh
Confidence 346688899999999999876422 335567899999999999899999999998554332 246777777765
Q ss_pred cCCCceEEEEe-cCc---chhhhH-HHHHHcC-CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEE
Q 015808 160 LKGLKTLAMTT-NGL---TLARKL-PKLKESG-LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKV 231 (400)
Q Consensus 160 ~~g~~~~~i~T-NG~---ll~~~~-~~l~~~g-~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i 231 (400)
..+...+.+.+ +.. .+++.+ +.+...+ +..+.+++++.+++..+.+++..+.+.+.+.++.+++. |+ .+..
T Consensus 210 i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i-~i~~ 288 (420)
T TIGR01578 210 IPGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDL-TLST 288 (420)
T ss_pred CCCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEe
Confidence 44432445443 221 123444 3333333 57899999999999999998877789999999999998 55 4555
Q ss_pred EEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCC
Q 015808 232 NCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVP 278 (400)
Q Consensus 232 ~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~ 278 (400)
.+.+ .||.+.+++.+.++++.+.+++ +.+..|.|..+++......++
T Consensus 289 ~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~~~v~ 337 (420)
T TIGR01578 289 DIIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMKRIP 337 (420)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCCCCCC
Confidence 5544 4788999999999999998874 777889999888765444444
No 119
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.1e-11 Score=120.19 Aligned_cols=191 Identities=17% Similarity=0.307 Sum_probs=149.6
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEC------CCccc--hhhHHHHHHH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG------GEPTV--RKDIEEACFH 156 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G------GEPll--~~~l~~~i~~ 156 (400)
.+..|.+..+||.+|+||..+... ......++++|.+.++.+.+.|++.|.|+| |--+- .+.|.+|++.
T Consensus 144 ~~A~v~I~eGCn~~CtfCiiP~~R---G~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~ 220 (437)
T COG0621 144 VRAFVKIQEGCNKFCTFCIIPYAR---GKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRE 220 (437)
T ss_pred eEEEEEhhcCcCCCCCeeeeeccC---CCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHH
Confidence 356677789999999999987632 345567899999999999999999999986 44443 3668999999
Q ss_pred hhhcCCCceEEEEe-cCcchhhhHHHHHHcC---CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEE
Q 015808 157 LSKLKGLKTLAMTT-NGLTLARKLPKLKESG---LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN 232 (400)
Q Consensus 157 ~~~~~g~~~~~i~T-NG~ll~~~~~~l~~~g---~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~ 232 (400)
+.+..|+.++.+.| +..-+++.+..+.+.+ +.++.+++++.++...+.++++.+-+..++-++++++.-. .+.+.
T Consensus 221 l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~P-d~~i~ 299 (437)
T COG0621 221 LSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARP-DIAIS 299 (437)
T ss_pred HhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCC-CceEe
Confidence 99887877788765 4555556664444442 4589999999999999999998888999999999998755 77787
Q ss_pred EEE---ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCc-ccCCCCH
Q 015808 233 CVV---MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWN-VKKLVPY 279 (400)
Q Consensus 233 ~~v---~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~-~~~~~~~ 279 (400)
+.+ .||+++++++++++++++.+++ +..+.|.|-.|++.. ....++.
T Consensus 300 tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~ 351 (437)
T COG0621 300 TDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPE 351 (437)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCH
Confidence 755 4778999999999999998885 666788888877655 2344543
No 120
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.44 E-value=2.2e-11 Score=120.85 Aligned_cols=191 Identities=16% Similarity=0.293 Sum_probs=139.2
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCc------cch-hhHHHHHHHhh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEP------TVR-KDIEEACFHLS 158 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEP------ll~-~~l~~~i~~~~ 158 (400)
+..+.++.+||.+|.||..+... ......+.+++.+.++.+.+.|++.|.|+|..- +.. ..+.++++.+.
T Consensus 141 ~~~v~i~rGC~~~CsFC~ip~~~---G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~ 217 (434)
T PRK14330 141 HAWVTIIYGCNRFCTYCIVPYTR---GREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS 217 (434)
T ss_pred EEEEEcccCCCCCCCCCceECcC---CCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHH
Confidence 45577789999999999875422 234567899999999988888999999976432 211 34778888776
Q ss_pred hcCCCceEEEE-ecCcchhhh-HHHHHHcC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEE
Q 015808 159 KLKGLKTLAMT-TNGLTLARK-LPKLKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVN 232 (400)
Q Consensus 159 ~~~g~~~~~i~-TNG~ll~~~-~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~ 232 (400)
+..++..+.+. ++...+++. ++.+.+.+ +..+.|.+++.+++..+.++++.+.+.+.+.++.+++. |+ .+...
T Consensus 218 ~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i-~i~~d 296 (434)
T PRK14330 218 KIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDA-SISSD 296 (434)
T ss_pred hcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEEE
Confidence 65555433332 344444444 45566666 57899999999999999998877899999999999997 44 44444
Q ss_pred EEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc--cCCCCHH
Q 015808 233 CVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV--KKLVPYA 280 (400)
Q Consensus 233 ~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~--~~~~~~~ 280 (400)
+.+ .||.+.+++.+.++++.+.+++ +.+..|.|..|++... ...++.+
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~ 348 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYE 348 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCCCHH
Confidence 444 4778999999999999999885 6678899998887654 2334443
No 121
>PRK05927 hypothetical protein; Provisional
Probab=99.44 E-value=4.1e-12 Score=121.44 Aligned_cols=204 Identities=18% Similarity=0.278 Sum_probs=145.6
Q ss_pred CCCccEE---EEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCc-cchhh-HHHHHH
Q 015808 81 GRMHTYL---RISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEP-TVRKD-IEEACF 155 (400)
Q Consensus 81 ~~~~~~l---~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEP-ll~~~-l~~~i~ 155 (400)
|..+.|+ .+++|+.|+.+|.||++...... .....|+.+++.+.++++.+.|+..|.|+||+. -.-.+ +.++++
T Consensus 38 G~~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~-~~~y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~ 116 (350)
T PRK05927 38 QNTVTYVLDANPNYTNICKIDCTFCAFYRKPHS-SDAYLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVR 116 (350)
T ss_pred CCeEEEEcccCCccchhhhcCCccCCccCCCCC-ccccccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHH
Confidence 4555544 36779999999999998764322 233479999999999999999999999999984 33333 568888
Q ss_pred Hhhhc-CCCceEE----------EEecCcchhhhHHHHHHcCCCeEEE-ecCCCCHHHHHHhhcCC-CHHHHHHHHHHHH
Q 015808 156 HLSKL-KGLKTLA----------MTTNGLTLARKLPKLKESGLTSVNI-SLDTLVPAKFEFLTRRK-GHEKVMESINAAI 222 (400)
Q Consensus 156 ~~~~~-~g~~~~~----------i~TNG~ll~~~~~~l~~~g~~~i~i-Sldg~~~~~~~~ir~~~-~~~~v~~~i~~l~ 222 (400)
.+++. +++ .+. -.+.|....+.+..|+++|++++.= .++..++..++.+...+ +.+..++.++.+.
T Consensus 117 ~ik~~~p~l-~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~ 195 (350)
T PRK05927 117 ITVKEFPSL-HPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAH 195 (350)
T ss_pred HHHHHCCCC-cccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 88864 234 211 1236877788899999999976664 67777777777776655 3699999999999
Q ss_pred HcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeecC----CCCCCccc--CCCCHHHHHHHHH
Q 015808 223 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPF----DGNVWNVK--KLVPYAEMLDTVV 287 (400)
Q Consensus 223 ~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~----~~~~~~~~--~~~~~~e~~~~i~ 287 (400)
++|+ ++.-...+.-|++.++..+.+..++++.-. ..|..|+|+ .+++.... ...+..+.++.+.
T Consensus 196 ~lGi-~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iA 266 (350)
T PRK05927 196 RLGF-RSTATMMFGHVESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILA 266 (350)
T ss_pred HcCC-CcCceeEEeeCCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHH
Confidence 9999 887777776688888877777777775432 134555554 34444322 1466777776654
No 122
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.44 E-value=3.3e-11 Score=119.70 Aligned_cols=193 Identities=15% Similarity=0.222 Sum_probs=139.9
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch--------hhHHHHHHH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR--------KDIEEACFH 156 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~--------~~l~~~i~~ 156 (400)
....+.++.+||.+|+||..+... ......+++++.+.++.+.+.|++.|.|+|..-..+ ..+.++++.
T Consensus 148 ~~a~v~i~rGC~~~CsFC~ip~~r---G~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~ 224 (446)
T PRK14337 148 ASAFVNIMQGCDNFCAYCIVPYTR---GRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHK 224 (446)
T ss_pred cEEEEEeccCCCCCCcCCCcccCC---CCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHH
Confidence 346678889999999999876422 334667899999999999899999999988443211 247788888
Q ss_pred hhhcCCCceEEEEe-cCcchhh-hHHHHHH--cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCC-cEEE
Q 015808 157 LSKLKGLKTLAMTT-NGLTLAR-KLPKLKE--SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYN-PVKV 231 (400)
Q Consensus 157 ~~~~~g~~~~~i~T-NG~ll~~-~~~~l~~--~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~-~v~i 231 (400)
+.+..++..+.+.+ +...+++ .+..+.+ .++..+.+.+++.+++..+.+.++.+.+.+.+.++.+++.+.. .+..
T Consensus 225 l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~ 304 (446)
T PRK14337 225 VAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTT 304 (446)
T ss_pred HHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 77655654455543 4444444 4466665 3478999999999999999988877799999999999998430 3334
Q ss_pred EEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc-cCCCCHH
Q 015808 232 NCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV-KKLVPYA 280 (400)
Q Consensus 232 ~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~-~~~~~~~ 280 (400)
.+.+ .||++.+++.+.++++.+.+++ +..+.|.|..|++... ...++.+
T Consensus 305 d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~ 356 (446)
T PRK14337 305 DLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEE 356 (446)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHH
Confidence 4333 3778999999999999999885 4455788888876544 2334443
No 123
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.43 E-value=2.5e-11 Score=120.74 Aligned_cols=192 Identities=16% Similarity=0.254 Sum_probs=140.2
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEC------------CCccc--hhhHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG------------GEPTV--RKDIE 151 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G------------GEPll--~~~l~ 151 (400)
...+.++.+||.+|.||..+... ......+++++.+.++.+.+.|++.|.|+| +.|.. ...|.
T Consensus 149 ~a~i~i~~GC~~~CsFC~ip~~r---G~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~ 225 (448)
T PRK14333 149 TAWVNVIYGCNERCTYCVVPSVR---GKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLT 225 (448)
T ss_pred eEEEEhhcCCCCCCCCCceeccc---CCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHH
Confidence 45677889999999999876422 223456789999999888888999998875 22322 12588
Q ss_pred HHHHHhhhcCCCceEEEE-ecCcchhhhH-HHHHHc--CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCC
Q 015808 152 EACFHLSKLKGLKTLAMT-TNGLTLARKL-PKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYN 227 (400)
Q Consensus 152 ~~i~~~~~~~g~~~~~i~-TNG~ll~~~~-~~l~~~--g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~ 227 (400)
++++.+.+..++..+.+. .+...+++.+ +.+.+. ++..+.|.+++.+++..+.+++..+.+.+.+.++.+++.+..
T Consensus 226 ~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~ 305 (448)
T PRK14333 226 DLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPD 305 (448)
T ss_pred HHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 888888876666556653 3444455544 555553 478999999999999999998888899999999999999430
Q ss_pred -cEEEEEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc-cCCCCHH
Q 015808 228 -PVKVNCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV-KKLVPYA 280 (400)
Q Consensus 228 -~v~i~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~-~~~~~~~ 280 (400)
.+...+.+ .||.+.+++.+.++++.+.+++ +.+..|.|..|++... ...++.+
T Consensus 306 i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~ 362 (448)
T PRK14333 306 ASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEE 362 (448)
T ss_pred cEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHH
Confidence 34444443 3778999999999999999884 6778899998877543 2334443
No 124
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=99.42 E-value=1.2e-12 Score=110.84 Aligned_cols=114 Identities=12% Similarity=0.189 Sum_probs=76.5
Q ss_pred hhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCC--CEEEEECCCccchhh---H
Q 015808 76 LIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGV--DKIRLTGGEPTVRKD---I 150 (400)
Q Consensus 76 ~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~--~~i~~~GGEPll~~~---l 150 (400)
.++..|.+. .|.+ ++||++|+||+....++. .....++.+.+.++++.+...+. ..|+|+|||||++.+ +
T Consensus 11 ~~~GpG~r~---~if~-~GCnl~C~~C~n~~~~~~-~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl~~~~~~~l 85 (154)
T PRK11121 11 VVNGPGTRC---TLFV-SGCVHQCPGCYNKSTWRL-NSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPLHPQNVPDI 85 (154)
T ss_pred eecCCCcEE---EEEc-CCCCCcCcCCCChhhccC-CCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCccchhhHHHH
Confidence 455556532 3333 999999999999875432 23445777778888887766554 689999999999653 5
Q ss_pred HHHHHHhhhcC-CCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCC
Q 015808 151 EEACFHLSKLK-GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTL 197 (400)
Q Consensus 151 ~~~i~~~~~~~-g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~ 197 (400)
.++++++++.. +. .+ +.|||+.+++..... ..-++.+.|-+||.
T Consensus 86 ~~l~~~~k~~~~~~-~i-~~~tGy~~eel~~~~-~~~l~~~DvlvDG~ 130 (154)
T PRK11121 86 LKLVQRVKAECPGK-DI-WVWTGYKLDELNAAQ-RQVVDLIDVLVDGK 130 (154)
T ss_pred HHHHHHHHHHCCCC-CE-EEecCCCHHHHHHHH-HHHHhhCCEEEech
Confidence 67777776532 33 44 568999987644322 12255677999994
No 125
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.42 E-value=5.5e-11 Score=119.44 Aligned_cols=183 Identities=14% Similarity=0.235 Sum_probs=137.1
Q ss_pred EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCcc------ch-hhHHHHHHHhhh
Q 015808 87 LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VR-KDIEEACFHLSK 159 (400)
Q Consensus 87 l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl------l~-~~l~~~i~~~~~ 159 (400)
..|.++.+||.+|+||..+... ......+++++.+.++.+.+.|++.|.|+|-.-. .+ ..|.++++.+..
T Consensus 159 a~v~isrGCp~~CsFC~ip~~r---G~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~ 235 (502)
T PRK14326 159 AWVSISVGCNNTCTFCIVPSLR---GKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGE 235 (502)
T ss_pred EEEEEccCCCCCCccCceeccC---CCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHh
Confidence 5678899999999999886532 2345678999999999998889999988763322 22 346777877765
Q ss_pred cCCCceEEEEe-cCcchh-hhHHHHHHcC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEEE
Q 015808 160 LKGLKTLAMTT-NGLTLA-RKLPKLKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC 233 (400)
Q Consensus 160 ~~g~~~~~i~T-NG~ll~-~~~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~ 233 (400)
..++..+.+.+ +...++ +.++.+.+.+ +.++.+.+++.+++..+.++++.+.+.+.+.++.+++. |+ .+...+
T Consensus 236 i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i-~i~~~~ 314 (502)
T PRK14326 236 IDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDA-AITTDI 314 (502)
T ss_pred cCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEEE
Confidence 54553455543 333344 4456676776 78999999999999999998887899999999999997 44 444444
Q ss_pred EE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc
Q 015808 234 VV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV 273 (400)
Q Consensus 234 ~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~ 273 (400)
++ .||.+.+++.++++++.+.+++ +.++.|.|+.|++...
T Consensus 315 IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~ 356 (502)
T PRK14326 315 IVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAE 356 (502)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHh
Confidence 44 3788999999999999998885 5566788988877654
No 126
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.41 E-value=2.8e-11 Score=118.61 Aligned_cols=183 Identities=14% Similarity=0.254 Sum_probs=133.5
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCC-C-CCCCCCHHH-HHHHHHHHHh-----CCCCEEEEECCCccch--hhHHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLT-P-KPQLLSLNE-ILRLAYLFVT-----SGVDKIRLTGGEPTVR--KDIEEACF 155 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~-~-~~~~~s~e~-i~~ii~~~~~-----~g~~~i~~~GGEPll~--~~l~~~i~ 155 (400)
||+| --|..+|.||......... . ....-..+. +..+++++.. .++..|.|.||.|++. ..+.++++
T Consensus 14 YiHi---PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~ 90 (400)
T PRK07379 14 YIHI---PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILT 90 (400)
T ss_pred EEEe---ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHH
Confidence 4555 5699999999875321100 0 011111222 2223333322 2467899999999964 34888998
Q ss_pred HhhhcCCCc---eEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEE
Q 015808 156 HLSKLKGLK---TLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV 231 (400)
Q Consensus 156 ~~~~~~g~~---~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i 231 (400)
.+++..++. .+++.+|...++ +.+..|.+.|+++|.|.+++.+++..+.+.+..+.+.+.++++.++++|+..+.+
T Consensus 91 ~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~ 170 (400)
T PRK07379 91 TLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSL 170 (400)
T ss_pred HHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 887654332 688889976664 6779999999999999999999999999988888999999999999999944777
Q ss_pred EEEE-ecCCChhHHHHHHHHHHhCCC-eEEEEeeecCCCCCC
Q 015808 232 NCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVW 271 (400)
Q Consensus 232 ~~~v-~~~~n~~el~~l~~~~~~~gv-~~~~~~~~p~~~~~~ 271 (400)
...+ .||++.+++.+.++++.+++. .+.+..+.+..++++
T Consensus 171 dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l 212 (400)
T PRK07379 171 DLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAF 212 (400)
T ss_pred EeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchh
Confidence 7666 478899999999999999887 466667777766554
No 127
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.40 E-value=8.2e-11 Score=117.43 Aligned_cols=183 Identities=10% Similarity=0.170 Sum_probs=135.7
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCcc------------chhhHHH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------------VRKDIEE 152 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl------------l~~~l~~ 152 (400)
.+..+.++.+||.+|+||..+... ...+..+++.+.+.++.+.+.|++.|.|+|..-. ....+.+
T Consensus 168 ~~a~i~isrGCp~~CsFC~ip~~~---G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~ 244 (467)
T PRK14329 168 VSAFVSIMRGCDNMCTFCVVPFTR---GRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQ 244 (467)
T ss_pred cEEEEEeccCcccCCCCCcccccc---CCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHH
Confidence 356788899999999999875422 2346678999999999998889999988762211 0124778
Q ss_pred HHHHhhhcC-CCceEEEEe-cCcchhh-hHHHHHHc--CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCC
Q 015808 153 ACFHLSKLK-GLKTLAMTT-NGLTLAR-KLPKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYN 227 (400)
Q Consensus 153 ~i~~~~~~~-g~~~~~i~T-NG~ll~~-~~~~l~~~--g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~ 227 (400)
+++.+.+.. +. .+.+.+ +...+++ .+..+.+. |+..|.+.+++.+++..+.+++..+.+.+.+.++.+++.+.
T Consensus 245 Ll~~l~~~~~~~-~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~- 322 (467)
T PRK14329 245 LLEMVAEAVPDM-RIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIP- 322 (467)
T ss_pred HHHHHHhcCCCc-EEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-
Confidence 888776532 33 455543 4444554 44666665 68999999999999999999887778889999999998753
Q ss_pred cEEEEE--EE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCc
Q 015808 228 PVKVNC--VV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWN 272 (400)
Q Consensus 228 ~v~i~~--~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~ 272 (400)
.+.+.+ .+ .||.+.+++.+.++++.+.+++ +.+..|.|+.|++..
T Consensus 323 ~~~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~ 371 (467)
T PRK14329 323 DCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAA 371 (467)
T ss_pred CCEEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhh
Confidence 444444 33 3788999999999999998875 566778898887755
No 128
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.38 E-value=2.5e-11 Score=118.25 Aligned_cols=177 Identities=18% Similarity=0.256 Sum_probs=129.1
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHH---Hh----CCCCEEEEECCCccc-hhh-HHHHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEI-LRLAYLF---VT----SGVDKIRLTGGEPTV-RKD-IEEACF 155 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i-~~ii~~~---~~----~g~~~i~~~GGEPll-~~~-l~~~i~ 155 (400)
||+| .-|..+|.||....... .. ...+.. ..+.+++ .+ ..+..|.|.||.|++ .++ +.++++
T Consensus 15 YiHi---PFC~~~C~yC~f~~~~~---~~--~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~~~l~~ll~ 86 (390)
T PRK06582 15 YIHW---PFCLSKCPYCDFNSHVA---ST--IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNPVIVEGIIN 86 (390)
T ss_pred EEEe---CCCcCcCCCCCCeeccC---CC--CCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCCHHHHHHHHH
Confidence 4555 78999999998764321 11 122222 2222222 21 247789999999965 454 677888
Q ss_pred HhhhcCC---CceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEE
Q 015808 156 HLSKLKG---LKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV 231 (400)
Q Consensus 156 ~~~~~~g---~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i 231 (400)
.+++..+ ...+++.+|+..++ +.++.|.+.|+++|.|.+++++++..+.+.+..+.+.++++++.+++.+. .+.+
T Consensus 87 ~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~-~v~~ 165 (390)
T PRK06582 87 KISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFP-RVSF 165 (390)
T ss_pred HHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCC-cEEE
Confidence 8876422 23799999998774 67799999999999999999999999999888889999999999998855 6766
Q ss_pred EEEE-ecCCChhHHHHHHHHHHhCCC-eEEEEeeecCCCCCC
Q 015808 232 NCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVW 271 (400)
Q Consensus 232 ~~~v-~~~~n~~el~~l~~~~~~~gv-~~~~~~~~p~~~~~~ 271 (400)
..++ .||++.+++.+-++.+.+++. .+.+..+....++++
T Consensus 166 DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l 207 (390)
T PRK06582 166 DLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPF 207 (390)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChH
Confidence 6655 577788888888888888777 466666666665543
No 129
>PRK05926 hypothetical protein; Provisional
Probab=99.36 E-value=9.9e-11 Score=112.75 Aligned_cols=185 Identities=18% Similarity=0.235 Sum_probs=138.5
Q ss_pred hhhcCCCccEEEE---EcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCc-cchhh-HH
Q 015808 77 IDSFGRMHTYLRI---SLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEP-TVRKD-IE 151 (400)
Q Consensus 77 ~~~~~~~~~~l~i---~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEP-ll~~~-l~ 151 (400)
.+.+|+.+.+..+ ..|+.|..+|.||....... ......++.|++.+.+++. +.|+..|.+.||+. -+..+ +.
T Consensus 57 ~~~~G~~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~-~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~~e~~~ 134 (370)
T PRK05926 57 ANRVGDTVYYSSTLYLYPTNFCQFNCTFCSFYAKPG-DPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSCNLAYYE 134 (370)
T ss_pred HHhcCCeEEEEEeeeeecCCCCCCCCCccccccCCC-CcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCCCHHHHH
Confidence 3457877776554 46999999999998654321 2345679999999999988 68999999999885 32233 57
Q ss_pred HHHHHhhhc-CCCceEEEEe----------cCcchhhhHHHHHHcCCCeEEE-ecCCCCHHHHHHhhcCC-CHHHHHHHH
Q 015808 152 EACFHLSKL-KGLKTLAMTT----------NGLTLARKLPKLKESGLTSVNI-SLDTLVPAKFEFLTRRK-GHEKVMESI 218 (400)
Q Consensus 152 ~~i~~~~~~-~g~~~~~i~T----------NG~ll~~~~~~l~~~g~~~i~i-Sldg~~~~~~~~ir~~~-~~~~v~~~i 218 (400)
++++.+++. +++ .+.-.| .+....+.+..|+++|++.+.. ..+..+++.++.+.+.+ +.+..++.+
T Consensus 135 e~i~~Ik~~~p~i-~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i 213 (370)
T PRK05926 135 ELFSKIKQNFPDL-HIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIH 213 (370)
T ss_pred HHHHHHHHhCCCe-eEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHH
Confidence 888888875 244 333222 1223456789999999988775 47777788887776544 489999999
Q ss_pred HHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe-EEEEeeec
Q 015808 219 NAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMP 265 (400)
Q Consensus 219 ~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p 265 (400)
+.+.++|+ ++....++..|++.++..+.+..+++++.+ ..|..|+|
T Consensus 214 ~~a~~~Gi-~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp 260 (370)
T PRK05926 214 KTAHSLGI-PSNATMLCYHRETPEDIVTHMSKLRALQDKTSGFKNFIL 260 (370)
T ss_pred HHHHHcCC-cccCceEEeCCCCHHHHHHHHHHHHhcCCccCCeeeeEe
Confidence 99999999 888888887888999999999999998774 45666776
No 130
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=99.36 E-value=4.2e-11 Score=107.07 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=120.6
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEec
Q 015808 93 ERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTN 171 (400)
Q Consensus 93 ~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~TN 171 (400)
.+||++|.||......+. +.+..++++++.++++...+.|.++|.|.||+|+-+.. +.+.++++.. .+ .+.-.||
T Consensus 126 sgCnfrCVfCQNwdISq~-~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~lp~Ile~l~~~~~--~i-PvvwNSn 201 (335)
T COG1313 126 SGCNFRCVFCQNWDISQF-GIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPHLPFILEALRYASE--NI-PVVWNSN 201 (335)
T ss_pred cCcceEEEEecCcccccc-CCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCchHHHHHHHHHHhc--CC-CEEEecC
Confidence 799999999998765433 46788999999999999999999999999999998844 7888888876 35 6888999
Q ss_pred CcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCC-HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhH-HHHHHH
Q 015808 172 GLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG-HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE-ICDFVE 249 (400)
Q Consensus 172 G~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~-~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~e-l~~l~~ 249 (400)
++...+.++ |++--+|..--.+.-.+++.-.++.+.+. |+-+.+|+..+.+..- .+.|+..++|| +.+. -..+++
T Consensus 202 mY~s~E~l~-lL~gvVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g-~~iiRHLVlPg-hlecCTkpI~~ 278 (335)
T COG1313 202 MYMSEETLK-LLDGVVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVG-GLIIRHLVLPG-HLECCTKPILR 278 (335)
T ss_pred CccCHHHHH-HhhccceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcC-ceEEEEEecCC-chhhccHHHHH
Confidence 987655444 44432554444555556776667777777 8888999999998864 67899999998 5555 677888
Q ss_pred HHHhC
Q 015808 250 LTRDR 254 (400)
Q Consensus 250 ~~~~~ 254 (400)
|+.+.
T Consensus 279 wiae~ 283 (335)
T COG1313 279 WIAEN 283 (335)
T ss_pred HHHHh
Confidence 87773
No 131
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.36 E-value=5.5e-11 Score=113.79 Aligned_cols=200 Identities=21% Similarity=0.267 Sum_probs=131.4
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccchhh-HHHHHHHhhh-cCC
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSK-LKG 162 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll~~~-l~~~i~~~~~-~~g 162 (400)
++.|.+|+.|+.+|.||.....+ ..+....|++|++.+.+..+.+.|+..|.|.||| |-+..+ +.++++.+++ .+.
T Consensus 60 n~~in~TN~C~~~C~fCaF~~~~-~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~ 138 (370)
T COG1060 60 NRNINYTNICVNDCTFCAFYRKP-GDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPD 138 (370)
T ss_pred eecCCcchhhcCCCCccccccCC-CCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcc
Confidence 45689999999999999887644 2235678999999999999999999999999998 777766 4778888876 222
Q ss_pred CceEEEEecC--------c-c-hhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhc--CCCHHHHHHHHHHHHHcCCCcEE
Q 015808 163 LKTLAMTTNG--------L-T-LARKLPKLKESGLTSVNISLDTLVPAKFEFLTR--RKGHEKVMESINAAIEVGYNPVK 230 (400)
Q Consensus 163 ~~~~~i~TNG--------~-l-l~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~--~~~~~~v~~~i~~l~~~g~~~v~ 230 (400)
+ .+.-.|++ . + ..|.+.+|+++|++.+...-...-.+.++++.. +.+++..++.++.+.++|+ +..
T Consensus 139 ~-~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI-~~t 216 (370)
T COG1060 139 L-HIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGI-PTT 216 (370)
T ss_pred h-hhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-Ccc
Confidence 2 22222322 2 2 245689999999987776655544555554443 2349999999999999999 655
Q ss_pred EEEEEecCCChhHHHHHHHHH----HhCCC--eEEEEeeecCCCC-CCcccCCCCHHHHHHHHHH
Q 015808 231 VNCVVMRGFNDDEICDFVELT----RDRPI--NIRFIEFMPFDGN-VWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 231 i~~~v~~~~n~~el~~l~~~~----~~~gv--~~~~~~~~p~~~~-~~~~~~~~~~~e~~~~i~~ 288 (400)
..+.+.-+.+.++..+.+..+ .+.|- .+....|.|..+. ........+..+.+..++-
T Consensus 217 atml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAi 281 (370)
T COG1060 217 ATMLLGHVETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIAL 281 (370)
T ss_pred ceeEEEecCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHH
Confidence 555554445665544333333 33443 2333345554443 2222233455666665543
No 132
>PTZ00413 lipoate synthase; Provisional
Probab=99.35 E-value=2.6e-10 Score=107.32 Aligned_cols=186 Identities=16% Similarity=0.203 Sum_probs=144.7
Q ss_pred EcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-c-cchhh---HHHHHHHhhhc-CCC
Q 015808 90 SLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-P-TVRKD---IEEACFHLSKL-KGL 163 (400)
Q Consensus 90 ~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-P-ll~~~---l~~~i~~~~~~-~g~ 163 (400)
.+.+.|.-+|.||.+..+. ....++.+++.++.+...+.|+..+.++.|. + +-..+ +.+.|+.+++. .++
T Consensus 154 ilG~~CTr~C~FCaqstg~----~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~ 229 (398)
T PTZ00413 154 VMGDHCTRGCRFCSVKTSR----KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPEL 229 (398)
T ss_pred ecCCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCC
Confidence 3589999999999987532 2467899999999999999999888887663 3 43333 67778888764 234
Q ss_pred ceEEEEecCcc--hhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhc-CCCHHHHHHHHHHHHHc---CCCcEEEEEEEec
Q 015808 164 KTLAMTTNGLT--LARKLPKLKESGLTSVNISLDTLVPAKFEFLTR-RKGHEKVMESINAAIEV---GYNPVKVNCVVMR 237 (400)
Q Consensus 164 ~~~~i~TNG~l--l~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~-~~~~~~v~~~i~~l~~~---g~~~v~i~~~v~~ 237 (400)
.+.+.+ |-+ ..+.+..|+++|++.++..|++ .+..|..++. ..+|++.++.|+.+++. |+ .+.-..++..
T Consensus 230 -~Ievli-gDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi-~tcSGiIVGL 305 (398)
T PTZ00413 230 -LLEALV-GDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAM-LTKSSIMLGL 305 (398)
T ss_pred -eEEEcC-CccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCc-eEeeeeEecC
Confidence 344432 322 3467899999999999999999 5899999995 57899999999999987 77 6666777888
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEE-eeecCCCCCCcccCCCCHHHHH
Q 015808 238 GFNDDEICDFVELTRDRPINIRFI-EFMPFDGNVWNVKKLVPYAEML 283 (400)
Q Consensus 238 ~~n~~el~~l~~~~~~~gv~~~~~-~~~p~~~~~~~~~~~~~~~e~~ 283 (400)
|++.+|+.++++.+++.|+++.-+ +|+......+....+++++++-
T Consensus 306 GET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~ 352 (398)
T PTZ00413 306 GETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFE 352 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHH
Confidence 899999999999999999986554 7777666666666777776653
No 133
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.35 E-value=2.1e-10 Score=112.22 Aligned_cols=182 Identities=16% Similarity=0.221 Sum_probs=133.6
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHh----CCCCEEEEECCCccchh--hHHHHH
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLS----LNEILRLAYLFVT----SGVDKIRLTGGEPTVRK--DIEEAC 154 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s----~e~i~~ii~~~~~----~g~~~i~~~GGEPll~~--~l~~~i 154 (400)
-||.| .-|..+|.||....... ....... .+.+.+-++.... ..+..|.|.||.|++-+ ++.+++
T Consensus 22 lYiHI---PFC~~~C~yC~f~~~~~--~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~~~L~~ll 96 (394)
T PRK08898 22 LYVHF---PWCVRKCPYCDFNSHEW--KDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLL 96 (394)
T ss_pred EEEEe---CCccCcCCCCCCccccc--CCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCHHHHHHHH
Confidence 35555 55999999998754321 1111122 2333333332221 23678999999999753 488899
Q ss_pred HHhhhcCCC---ceEEEEecCcch-hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEE
Q 015808 155 FHLSKLKGL---KTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVK 230 (400)
Q Consensus 155 ~~~~~~~g~---~~~~i~TNG~ll-~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~ 230 (400)
+.+++...+ ..+++.+|...+ .+.+..|.++|++.|.|.+++.+++..+.+.+..+.+.+.+.++.+++.+. .+.
T Consensus 97 ~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~-~v~ 175 (394)
T PRK08898 97 SDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFD-NFN 175 (394)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCC-ceE
Confidence 888865433 268999997666 577899999999999999999999999999887789999999999998765 677
Q ss_pred EEEEE-ecCCChhHHHHHHHHHHhCCC-eEEEEeeecCCCCCCc
Q 015808 231 VNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVWN 272 (400)
Q Consensus 231 i~~~v-~~~~n~~el~~l~~~~~~~gv-~~~~~~~~p~~~~~~~ 272 (400)
+..++ .+|++.+++.+.++++.+.+. .+.+..+.+..++++.
T Consensus 176 ~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~ 219 (394)
T PRK08898 176 LDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFA 219 (394)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhh
Confidence 77666 467788999999999999887 4777778887776554
No 134
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.35 E-value=5.8e-11 Score=118.04 Aligned_cols=182 Identities=14% Similarity=0.241 Sum_probs=132.5
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh------CCCCEEEEECCCccch-h-hHHHHHHHh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT------SGVDKIRLTGGEPTVR-K-DIEEACFHL 157 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~------~g~~~i~~~GGEPll~-~-~l~~~i~~~ 157 (400)
||+| .-|..+|.||...... .......-..+.+.+.++...+ ..+..|.|.||.|++- + ++.++++.+
T Consensus 65 YiHI---PFC~~~C~yC~f~~~~-~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~~~l~~ll~~i 140 (449)
T PRK09058 65 YIHI---PFCRTHCTFCGFFQNA-WNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSAEDLARLITAL 140 (449)
T ss_pred EEEe---CCcCCcCCCCCCcCcC-CchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCHHHHHHHHHHH
Confidence 4555 4599999999765321 0011001123333333433332 2367899999999974 3 478888888
Q ss_pred hhcCCC---ceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 158 SKLKGL---KTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 158 ~~~~g~---~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
++...+ ..+++.+|...++ +.+..+.+.|++.|.|.+++++++..+.+.+..+.+.+++.++.+++.|+..+.+..
T Consensus 141 ~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~Dl 220 (449)
T PRK09058 141 REYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDL 220 (449)
T ss_pred HHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 764332 2688989877664 677899999999999999999999999998888899999999999999953677776
Q ss_pred EE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCC
Q 015808 234 VV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVW 271 (400)
Q Consensus 234 ~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~ 271 (400)
++ .+|++.+++.+.++++.+++.+ +.+..+.+..++++
T Consensus 221 I~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l 260 (449)
T PRK09058 221 IFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPL 260 (449)
T ss_pred EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHH
Confidence 65 4788899999999999998874 66667777766544
No 135
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.34 E-value=9.7e-11 Score=114.12 Aligned_cols=178 Identities=15% Similarity=0.225 Sum_probs=131.7
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHh----CCCCEEEEECCCccchh--hHHHHHHHh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLL--SLNEILRLAYLFVT----SGVDKIRLTGGEPTVRK--DIEEACFHL 157 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~--s~e~i~~ii~~~~~----~g~~~i~~~GGEPll~~--~l~~~i~~~ 157 (400)
||+| .-|..+|.||....... ..... -.+.+.+.++...+ ..+..|.|.||.|++-+ .+.++++.+
T Consensus 8 YiHI---PFC~~kC~yC~f~~~~~---~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~~~L~~ll~~i 81 (380)
T PRK09057 8 YVHW---PFCLAKCPYCDFNSHVR---HAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQPETVAALLDAI 81 (380)
T ss_pred EEEe---CCcCCcCCCCCCcccCc---CcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCHHHHHHHHHHH
Confidence 4555 56999999998764321 11111 12333333332222 24778999999999764 488899888
Q ss_pred hhcCCC---ceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 158 SKLKGL---KTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 158 ~~~~g~---~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
++...+ ..+++.+|...++ +.+..|.+.|+++|.+.+++.++++.+.+.+..+.+.+.++++.+++++. .+.+..
T Consensus 82 ~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~-~v~~dl 160 (380)
T PRK09057 82 ARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFP-RVSFDL 160 (380)
T ss_pred HHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCc-cEEEEe
Confidence 874333 2688999987775 77899999999999999999999999999888889999999999999966 777776
Q ss_pred EE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCC
Q 015808 234 VV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNV 270 (400)
Q Consensus 234 ~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~ 270 (400)
.+ .||++.+++.+.++.+.+++++ +.+..+.+..+++
T Consensus 161 i~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~ 199 (380)
T PRK09057 161 IYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTA 199 (380)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCCh
Confidence 66 3778888888888888888774 6666677766654
No 136
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=99.28 E-value=3.3e-11 Score=100.72 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=68.9
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEec
Q 015808 92 TERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN 171 (400)
Q Consensus 92 T~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TN 171 (400)
..+||++|+||+.+..+.. .....++.+++.+.++.... .+..|+|+||| +.++++.++++++++. |+ .+.+.||
T Consensus 22 l~GCnlrC~~C~n~~~~~~-~~g~~lt~eel~~~I~~~~~-~~~gVt~SGGE-l~~~~l~~ll~~lk~~-Gl-~i~l~Tg 96 (147)
T TIGR02826 22 ITGCPLGCKGCHSPESWHL-SEGTKLTPEYLTKTLDKYRS-LISCVLFLGGE-WNREALLSLLKIFKEK-GL-KTCLYTG 96 (147)
T ss_pred eCCCCCCCCCCCChHHcCC-CCCcCCCHHHHHHHHHHhCC-CCCEEEEechh-cCHHHHHHHHHHHHHC-CC-CEEEECC
Confidence 3799999999999865432 23457999999999887653 35789999999 7777899999999985 88 7999998
Q ss_pred CcchhhhHHHHHHcCCCeE
Q 015808 172 GLTLARKLPKLKESGLTSV 190 (400)
Q Consensus 172 G~ll~~~~~~l~~~g~~~i 190 (400)
++. ++....+++. ++.+
T Consensus 97 ~~~-~~~~~~il~~-iD~l 113 (147)
T TIGR02826 97 LEP-KDIPLELVQH-LDYL 113 (147)
T ss_pred CCC-HHHHHHHHHh-CCEE
Confidence 765 2333444443 4443
No 137
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.27 E-value=2.5e-10 Score=120.08 Aligned_cols=199 Identities=22% Similarity=0.259 Sum_probs=145.1
Q ss_pred CccE---EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccch-----------
Q 015808 83 MHTY---LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR----------- 147 (400)
Q Consensus 83 ~~~~---l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll~----------- 147 (400)
.++| +.|.+|+.|..+|.||.+..... ......|+.|++.+.+++..+.|+..+.|+||+ |-+.
T Consensus 66 ~Vty~~n~~In~Tn~C~~~C~YCaF~~~~~-~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~ 144 (843)
T PRK09234 66 VVTYSRKVFIPLTRLCRDRCHYCTFATVPG-KLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDER 144 (843)
T ss_pred eEEEEeEEEecCCCCCCCCCCcCCCccCCC-CCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCcccccccccccccc
Confidence 5544 46888999999999999875332 235567999999999999999999999999998 5542
Q ss_pred -----hh-HHHHHHHhhhcCCCceEEEEec-CcchhhhHHHHHHcCCCeEEEecCCCCHHHHHH------hhcCCCHHHH
Q 015808 148 -----KD-IEEACFHLSKLKGLKTLAMTTN-GLTLARKLPKLKESGLTSVNISLDTLVPAKFEF------LTRRKGHEKV 214 (400)
Q Consensus 148 -----~~-l~~~i~~~~~~~g~~~~~i~TN-G~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~------ir~~~~~~~v 214 (400)
.+ +.++++.+++..++ ... +| |.+-.+++..|++.|++ ..++++...+..|.. +...+.++.-
T Consensus 145 gy~~~~ey~~~~~~~ik~~~gl-~p~--i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~R 220 (843)
T PRK09234 145 GYDSTLDYVRAMAIRVLEETGL-LPH--LNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVR 220 (843)
T ss_pred ccccHHHHHHHHHHHHHHhcCC-Cce--eeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 12 45677777764454 222 33 44446889999999885 677777755555532 1233447778
Q ss_pred HHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhC-----CC-eEEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 015808 215 MESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDR-----PI-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 287 (400)
Q Consensus 215 ~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~-----gv-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 287 (400)
++.++.+.++|+ ++...+.+.-|.+.++..+.+..++++ ++ .+....|.|..++++......+..+.++.+.
T Consensus 221 L~ti~~A~~lGi-~~tsG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iA 298 (843)
T PRK09234 221 LRVLEDAGRLSV-PFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIA 298 (843)
T ss_pred HHHHHHHHHcCC-CccceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHH
Confidence 999999999999 888888887778888887777777765 44 3555678888788876666677888777664
No 138
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2e-11 Score=108.47 Aligned_cols=82 Identities=30% Similarity=0.408 Sum_probs=63.9
Q ss_pred CcccCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEE
Q 015808 92 TERCNLRCHYCMPPEGVDL--TPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMT 169 (400)
Q Consensus 92 T~~CNl~C~yC~~~~~~~~--~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~ 169 (400)
+.+||++|.||+....++. ......++.+++.+.++... .+...|+|+||||++++++.++++.+++. |+ ++.+.
T Consensus 29 ~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~-g~-~~~lE 105 (212)
T COG0602 29 FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEPLLQPNLLELLELLKRL-GF-RIALE 105 (212)
T ss_pred cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcCCCcccHHHHHHHHHhC-Cc-eEEec
Confidence 3799999999998754432 12456677777766666432 33458999999998889999999999986 88 79999
Q ss_pred ecCcchh
Q 015808 170 TNGLTLA 176 (400)
Q Consensus 170 TNG~ll~ 176 (400)
|||++-.
T Consensus 106 Tngti~~ 112 (212)
T COG0602 106 TNGTIPV 112 (212)
T ss_pred CCCCccc
Confidence 9998864
No 139
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.24 E-value=8.4e-10 Score=116.16 Aligned_cols=177 Identities=20% Similarity=0.270 Sum_probs=129.6
Q ss_pred hhcCCCccEE---EEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccchhh-HHH
Q 015808 78 DSFGRMHTYL---RISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEE 152 (400)
Q Consensus 78 ~~~~~~~~~l---~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll~~~-l~~ 152 (400)
+.+|+.++|+ .|++|+.|..+|.||.+..... ......++.|++.+.+.++.+.|+..|.+.||+ |-+..+ +.+
T Consensus 516 ~~~G~~Vt~vvn~~In~TN~C~~~C~FCafs~~~~-~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~ 594 (843)
T PRK09234 516 DVVGDDVTYVVNRNINFTNICYTGCRFCAFAQRKT-DADAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYAD 594 (843)
T ss_pred HhcCCeEEEEEeeceecCCCCCCCCcccccccCCC-CCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHH
Confidence 4467777654 3778999999999999875422 234556899999999999999999999999987 544433 578
Q ss_pred HHHHhhhcC-CCceEEEE----------ecCcchhhhHHHHHHcCCCeEEE-ecCCCCHHHHHHhhcCC-CHHHHHHHHH
Q 015808 153 ACFHLSKLK-GLKTLAMT----------TNGLTLARKLPKLKESGLTSVNI-SLDTLVPAKFEFLTRRK-GHEKVMESIN 219 (400)
Q Consensus 153 ~i~~~~~~~-g~~~~~i~----------TNG~ll~~~~~~l~~~g~~~i~i-Sldg~~~~~~~~ir~~~-~~~~v~~~i~ 219 (400)
+++.+++.. ++ .+... +.|....+.+..|+++|++.+.. +-.-++++....+.+.+ +.+..++.++
T Consensus 595 lir~IK~~~p~i-~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~ 673 (843)
T PRK09234 595 LVRAVKARVPSM-HVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVT 673 (843)
T ss_pred HHHHHHHhCCCe-eEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHH
Confidence 888888752 34 34333 34666678889999999987752 11122233443444333 4888899999
Q ss_pred HHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 220 AAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 220 ~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
.+.++|+ ++...+.+..+++.++..+.+.+++++..+
T Consensus 674 ~Ah~lGi-~~~stmm~G~~Et~edrv~hl~~LreLq~~ 710 (843)
T PRK09234 674 TAHEVGL-RSSSTMMYGHVDTPRHWVAHLRVLRDIQDR 710 (843)
T ss_pred HHHHcCC-CcccceEEcCCCCHHHHHHHHHHHHhcCcc
Confidence 9999999 887777777777889999999999987763
No 140
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.21 E-value=1.8e-09 Score=106.67 Aligned_cols=178 Identities=16% Similarity=0.218 Sum_probs=122.7
Q ss_pred cEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHhCC--CCEEEEECCCccchhh-HHHHHHHhhh
Q 015808 85 TYLRISLTERCNLRCHYCMPPEGVDLTPKPQLL--SLNEILRLAYLFVTSG--VDKIRLTGGEPTVRKD-IEEACFHLSK 159 (400)
Q Consensus 85 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~--s~e~i~~ii~~~~~~g--~~~i~~~GGEPll~~~-l~~~i~~~~~ 159 (400)
-|++| .-|+.+|.||...... ...... -.+.+.+.++.+.+.| +..|.|.||-|++.++ +.++++.+++
T Consensus 55 LYvHI---PFC~~~C~yC~f~~~~---~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l~~~L~~ll~~i~~ 128 (433)
T PRK08629 55 LYAHV---PFCHTLCPYCSFHRFY---FKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTILEDELAKTLELAKK 128 (433)
T ss_pred EEEEe---CCccCcCCCCCCcCcC---CCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccCHHHHHHHHHHHHH
Confidence 34555 4599999999876421 111111 1344444444444433 5678899999998654 7888888887
Q ss_pred cCCCceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHH---HHHHHHHHHcCCCcEEEEEEE
Q 015808 160 LKGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKV---MESINAAIEVGYNPVKVNCVV 235 (400)
Q Consensus 160 ~~g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v---~~~i~~l~~~g~~~v~i~~~v 235 (400)
..++..+++.+|...++ +.+..+.+. ++.|.|.+++.+++..+.+.+..++..+ ++.++.+++... .+.+...+
T Consensus 129 ~f~i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~-~v~~DlI~ 206 (433)
T PRK08629 129 LFSIKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFP-IINVDLIF 206 (433)
T ss_pred hCCCceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCC-eEEEEEEc
Confidence 66665788999988775 556778787 9999999999999999998776666455 555555444322 45555544
Q ss_pred -ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCC
Q 015808 236 -MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNV 270 (400)
Q Consensus 236 -~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~ 270 (400)
.||++.+++.+.++++.+++.+ +.+..+....++.
T Consensus 207 GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~ 243 (433)
T PRK08629 207 NFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTR 243 (433)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCch
Confidence 4788899999999999998874 6666665555443
No 141
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.20 E-value=1.5e-09 Score=106.34 Aligned_cols=172 Identities=19% Similarity=0.312 Sum_probs=129.4
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHH---h-C----CCCEEEEECCCccch-hh-HHHHHHHhhhcC
Q 015808 93 ERCNLRCHYCMPPEGVDLTPKPQLLSLNEI-LRLAYLFV---T-S----GVDKIRLTGGEPTVR-KD-IEEACFHLSKLK 161 (400)
Q Consensus 93 ~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i-~~ii~~~~---~-~----g~~~i~~~GGEPll~-~~-l~~~i~~~~~~~ 161 (400)
--|.-.|.||....... ... -..+.+ ..++.++. . . .+..|.|.||.|++- ++ +..+++.+++..
T Consensus 42 PFC~~~C~YC~fn~~~~--~~~--~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~ 117 (416)
T COG0635 42 PFCVSKCPYCDFNSHVT--KRG--QPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALRELF 117 (416)
T ss_pred ccccccCCCCCCeeecc--CCC--ChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHHHhc
Confidence 78999999999875322 111 222222 22233332 2 1 267899999999874 43 788888887554
Q ss_pred C-C---ceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE-
Q 015808 162 G-L---KTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV- 235 (400)
Q Consensus 162 g-~---~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v- 235 (400)
+ . ..++|..|...++ +.+..+.+.|+++|++.+.+++++..+.+.+..+.+.+.++++.+++.|+..+.+-...
T Consensus 118 ~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg 197 (416)
T COG0635 118 NDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG 197 (416)
T ss_pred ccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Confidence 2 1 2789999988775 77899999999999999999999999999999999999999999999999777777665
Q ss_pred ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCC
Q 015808 236 MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDG 268 (400)
Q Consensus 236 ~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~ 268 (400)
.|+++.+++.+.++.+.+++.+ +....+.-..+
T Consensus 198 lP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~ 231 (416)
T COG0635 198 LPGQTLESLKEDLEQALELGPDHLSLYSLAIEPG 231 (416)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCC
Confidence 5778999999999999998874 55555554443
No 142
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.16 E-value=5.8e-09 Score=98.71 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=126.2
Q ss_pred EEEEcCcccCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCC----EE-EEECC---Cccchh-h-HH
Q 015808 87 LRISLTERCNL----RCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVD----KI-RLTGG---EPTVRK-D-IE 151 (400)
Q Consensus 87 l~i~iT~~CNl----~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-~g~~----~i-~~~GG---EPll~~-~-l~ 151 (400)
..|..|.+|+. +|.||..... .....+.+.+.+.++.+.+ .+.. .+ .|++| +|..-+ + +.
T Consensus 17 ~~i~~srGC~~~~~g~C~FC~~~~~-----~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~ 91 (313)
T TIGR01210 17 TIILRTRGCYWAREGGCYMCGYLAD-----SSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRN 91 (313)
T ss_pred EEEEeCCCCCCCCCCcCccCCCCCC-----CCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHH
Confidence 34778999999 5999964432 1223588888777766554 3322 12 35666 665543 3 67
Q ss_pred HHHHHhhhcCCCceEEEEecCcch-hhhHHHHHHcCCC-eEEEecCCCCHHHHH-HhhcCCCHHHHHHHHHHHHHcCCCc
Q 015808 152 EACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLT-SVNISLDTLVPAKFE-FLTRRKGHEKVMESINAAIEVGYNP 228 (400)
Q Consensus 152 ~~i~~~~~~~g~~~~~i~TNG~ll-~~~~~~l~~~g~~-~i~iSldg~~~~~~~-~ir~~~~~~~v~~~i~~l~~~g~~~ 228 (400)
++++.+.+...+..+.+.|+.-.+ ++.+..+.++|+. .|.+.+++.+++..+ .+.++.+.+.+.++++.++++|+ .
T Consensus 92 ~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi-~ 170 (313)
T TIGR01210 92 YIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGA-G 170 (313)
T ss_pred HHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCC-c
Confidence 888888775335567888888666 4667889999997 799999999999995 67777789999999999999999 7
Q ss_pred EEEEEEEe-cC----CChhHHHHHHHHHHhCCCeEEEEeeecCCCCC
Q 015808 229 VKVNCVVM-RG----FNDDEICDFVELTRDRPINIRFIEFMPFDGNV 270 (400)
Q Consensus 229 v~i~~~v~-~~----~n~~el~~l~~~~~~~gv~~~~~~~~p~~~~~ 270 (400)
+...+.+. ++ ++.+++.+.++++..++-.+.+..+.+..++.
T Consensus 171 v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~~~vs~~~l~v~~gT~ 217 (313)
T TIGR01210 171 VKAYLLFKPPFLSEKEAIADMISSIRKCIPVTDTVSINPTNVQKGTL 217 (313)
T ss_pred EEEEEEecCCCCChhhhHHHHHHHHHHHHhcCCcEEEECCEEeCCCH
Confidence 77777664 32 23355666788887776346666666666653
No 143
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.11 E-value=8.7e-09 Score=91.77 Aligned_cols=202 Identities=19% Similarity=0.289 Sum_probs=150.7
Q ss_pred hhhhcCCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEC--CCccc---hhhH
Q 015808 76 LIDSFGRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTV---RKDI 150 (400)
Q Consensus 76 ~~~~~~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GEPll---~~~l 150 (400)
+.+-+++....+ +.+...|.-+|.||....+ ....+++++-.++++..+++|.+.|.+++ -+=|- ...|
T Consensus 62 i~ECw~~~tATF-mImG~~CTR~C~FC~V~~g-----~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hf 135 (306)
T COG0320 62 IGECWSRGTATF-MILGDICTRRCRFCDVKTG-----RPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHF 135 (306)
T ss_pred hHHHhcCCceEE-eeccchhccCCCccccCCC-----CCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHH
Confidence 445566554433 3368999999999999864 36779999999999999999999999996 22222 1347
Q ss_pred HHHHHHhhhcCCCceEEEEecCcc-hhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCC-Cc
Q 015808 151 EEACFHLSKLKGLKTLAMTTNGLT-LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY-NP 228 (400)
Q Consensus 151 ~~~i~~~~~~~g~~~~~i~TNG~l-l~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~-~~ 228 (400)
.+.|+.+++...-..+.+.|--.. ..+.++.+.+++.+.++-.+++. +..|..+|.+.+|++-++-++.+++.+. -.
T Consensus 136 a~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~ 214 (306)
T COG0320 136 AECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDIP 214 (306)
T ss_pred HHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcCcchhhcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCcc
Confidence 888999887532224555543211 34567889999999999999996 8899999988889999999999999983 04
Q ss_pred EEEEEEEecCCChhHHHHHHHHHHhCCCeEEE-EeeecCCCCCCcccCCCCHHHHHH
Q 015808 229 VKVNCVVMRGFNDDEICDFVELTRDRPINIRF-IEFMPFDGNVWNVKKLVPYAEMLD 284 (400)
Q Consensus 229 v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~-~~~~p~~~~~~~~~~~~~~~e~~~ 284 (400)
.+-...+.-|++.+|+.+.++-+++.|+++.. -+|+...........+++.+++.+
T Consensus 215 TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~HlpV~ryv~PeeF~~ 271 (306)
T COG0320 215 TKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPVQRYVTPEEFDE 271 (306)
T ss_pred cccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCCceeccCHHHHHH
Confidence 45555666678999999999999999998544 456665556666667777776643
No 144
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.07 E-value=1.2e-08 Score=88.11 Aligned_cols=197 Identities=18% Similarity=0.212 Sum_probs=139.2
Q ss_pred cEEEEEcC-cccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccch---hhHHHHHHHhhh
Q 015808 85 TYLRISLT-ERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR---KDIEEACFHLSK 159 (400)
Q Consensus 85 ~~l~i~iT-~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll~---~~l~~~i~~~~~ 159 (400)
.++.|.+| +.|-++|.||...... ..-..+.+.+.....++.+.|...+.++||- |-.. .++.+.++++++
T Consensus 10 k~~sISVTG~yC~lnC~HCg~~~L~----~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke 85 (275)
T COG1856 10 KFISISVTGAYCSLNCPHCGRHYLE----HMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKE 85 (275)
T ss_pred CCceEEEeccceEecChHHHHHHHH----HhcccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHH
Confidence 46778886 5799999999876432 2233445666666677888899999999974 4332 347788888887
Q ss_pred cCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcC-CCHHHHHHHHHHHHHcCCCcEEEEEEEe--
Q 015808 160 LKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVM-- 236 (400)
Q Consensus 160 ~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~~v~-- 236 (400)
..|+ .+...+ |..-++.+++|++.+++.+.+.+-| +.+...++-+- .+-+..++.++.|.+.|+ ++....++.
T Consensus 86 ~~~l-~inaHv-GfvdE~~~eklk~~~vdvvsLDfvg-Dn~vIk~vy~l~ksv~dyl~~l~~L~e~~i-rvvpHitiGL~ 161 (275)
T COG1856 86 RTGL-LINAHV-GFVDESDLEKLKEELVDVVSLDFVG-DNDVIKRVYKLPKSVEDYLRSLLLLKENGI-RVVPHITIGLD 161 (275)
T ss_pred hhCe-EEEEEe-eeccHHHHHHHHHhcCcEEEEeecC-ChHHHHHHHcCCccHHHHHHHHHHHHHcCc-eeceeEEEEec
Confidence 6565 333322 4444567799999999999998888 56666666665 347899999999999999 766665552
Q ss_pred cCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 015808 237 RGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 290 (400)
Q Consensus 237 ~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 290 (400)
.|.-..| .+.++.+.+...+ +...-++|..|+.++.....+.+|.++.+....
T Consensus 162 ~gki~~e-~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR 215 (275)
T COG1856 162 FGKIHGE-FKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYAR 215 (275)
T ss_pred cCcccch-HHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHH
Confidence 2211223 3445666666665 556779999999999888888888877765443
No 145
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=99.02 E-value=1.7e-09 Score=94.60 Aligned_cols=194 Identities=20% Similarity=0.323 Sum_probs=142.1
Q ss_pred CcccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHhCCCCEEEEEC------CCccchhhHHHHHHHhhhcCCCc
Q 015808 92 TERCNLRCHYCMPPEGVDL-TPKPQLLSLNEILRLAYLFVTSGVDKIRLTG------GEPTVRKDIEEACFHLSKLKGLK 164 (400)
Q Consensus 92 T~~CNl~C~yC~~~~~~~~-~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G------GEPll~~~l~~~i~~~~~~~g~~ 164 (400)
|.+|.-.|+||.+.+.++- .+..+.|..+++.+..++.++.|-..+++.. |--...+.+.++|+.++.. |.
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~M-gm- 168 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRDM-GM- 168 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccchhHHHHHHHHHHHHHcC-Cc-
Confidence 8999999999998765432 1234568899998888888888866666542 4444455667777777764 66
Q ss_pred eEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHH
Q 015808 165 TLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEI 244 (400)
Q Consensus 165 ~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el 244 (400)
.+. .|=|.+-.++..+|+++|+...+-.||+ ..|.|.++--..+||.-++.|+.++++|+ ++--.-++.-|...++-
T Consensus 169 EvC-vTLGMv~~qQAkeLKdAGLTAYNHNlDT-SREyYskvItTRtYDdRL~Ti~nvr~aGi-kvCsGGIlGLGE~e~Dr 245 (380)
T KOG2900|consen 169 EVC-VTLGMVDQQQAKELKDAGLTAYNHNLDT-SREYYSKVITTRTYDDRLQTIKNVREAGI-KVCSGGILGLGESEDDR 245 (380)
T ss_pred eee-eeeccccHHHHHHHHhccceecccCccc-hhhhhcccceecchHHHHHHHHHHHHhcc-eecccccccccccccce
Confidence 444 4778777788999999999999999999 57888887776789999999999999999 66555566556555554
Q ss_pred HHHHHHHHhCC---CeEEEEeeecCCCCCCcc--cCCCCHHHHHHHHHHhC
Q 015808 245 CDFVELTRDRP---INIRFIEFMPFDGNVWNV--KKLVPYAEMLDTVVKKF 290 (400)
Q Consensus 245 ~~l~~~~~~~g---v~~~~~~~~p~~~~~~~~--~~~~~~~e~~~~i~~~~ 290 (400)
.-++..+..+. -.+-+..+.++.|++... ...++..++++.+....
T Consensus 246 iGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~e~lR~IaTAR 296 (380)
T KOG2900|consen 246 IGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQIDEILRTIATAR 296 (380)
T ss_pred eeeeeeeccCCCCCcccccceEEecCCcccchhhcccccHHHHHHHHhhhh
Confidence 44444444332 235566778888887765 56677888888876543
No 146
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=99.01 E-value=4.5e-08 Score=91.28 Aligned_cols=178 Identities=21% Similarity=0.328 Sum_probs=124.5
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCC-CCCCCCCHHH-HHHHHH-HHHhCC--CCEEEEEC-CCccchhh----H-HHHH
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLT-PKPQLLSLNE-ILRLAY-LFVTSG--VDKIRLTG-GEPTVRKD----I-EEAC 154 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~-~~~~~~s~e~-i~~ii~-~~~~~g--~~~i~~~G-GEPll~~~----l-~~~i 154 (400)
..++++-.+|...|.|||........ .....+..++ +.+.++ ++.+.+ ...|.++. =+|....+ + .+++
T Consensus 30 ~y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~il 109 (297)
T COG1533 30 DYTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKIL 109 (297)
T ss_pred ceecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHH
Confidence 46688889999999999987533211 1112233333 555554 344333 23455554 78988644 3 4555
Q ss_pred HHhhhcCCCceEEEEecCcchhhhHHHHH---HcCCCeEEEecCCCCHHHHHHhhcCC-CHHHHHHHHHHHHHcCCCcEE
Q 015808 155 FHLSKLKGLKTLAMTTNGLTLARKLPKLK---ESGLTSVNISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVK 230 (400)
Q Consensus 155 ~~~~~~~g~~~~~i~TNG~ll~~~~~~l~---~~g~~~i~iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~ 230 (400)
+.+.+. +. .+.|.|-..+..++++.|. ..+...|.+|+.+.+++..+.+-... +.+.-+++++.+.++|+ ++.
T Consensus 110 ei~~~~-~~-~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi-~~~ 186 (297)
T COG1533 110 EILLKY-GF-PVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGI-PVG 186 (297)
T ss_pred HHHHHc-CC-cEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCC-eEE
Confidence 555554 77 7999999988877666665 44455899999998776777665544 49999999999999999 888
Q ss_pred EEE-EEecCCChhHHHHHHHHHHhCCCeEEEEeeecC
Q 015808 231 VNC-VVMRGFNDDEICDFVELTRDRPINIRFIEFMPF 266 (400)
Q Consensus 231 i~~-~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~ 266 (400)
+.+ -++++.|+++++++++.+.+.|+......+..+
T Consensus 187 v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~ 223 (297)
T COG1533 187 LFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRL 223 (297)
T ss_pred EEEecccCCCChHHHHHHHHHHHHcCCCeeEeeeeec
Confidence 776 578888999999999999998886544444443
No 147
>PRK00955 hypothetical protein; Provisional
Probab=98.96 E-value=1.1e-07 Score=96.25 Aligned_cols=181 Identities=17% Similarity=0.234 Sum_probs=119.8
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCEE-EEECC-----------C---------
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTS-GVDKI-RLTGG-----------E--------- 143 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~-g~~~i-~~~GG-----------E--------- 143 (400)
...|.++.+|+.+|+||...... .+.....+.+.+.+.++.+.+. |.+.+ .-.|| .
T Consensus 293 ~~sI~i~RGC~g~CSFCaIp~~r--Gr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~ 370 (620)
T PRK00955 293 KFSITSHRGCFGGCSFCAITFHQ--GRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKN 370 (620)
T ss_pred EEEEEeeCCCCCCCCCCCeeccc--CCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCccccccccccccccccccc
Confidence 35677789999999999876421 1222567899998888888765 44333 21222 0
Q ss_pred ---------ccc---hhhHHHHHHHhhhcCCCceEEEEec---Ccch----hhhHHHHHHcCCC-eEEEecCCCCHHHHH
Q 015808 144 ---------PTV---RKDIEEACFHLSKLKGLKTLAMTTN---GLTL----ARKLPKLKESGLT-SVNISLDTLVPAKFE 203 (400)
Q Consensus 144 ---------Pll---~~~l~~~i~~~~~~~g~~~~~i~TN---G~ll----~~~~~~l~~~g~~-~i~iSldg~~~~~~~ 203 (400)
+-+ +..+.+|++.+++..|++.+.|.+. .+++ ++.++.|.+..+. .+.|++++.+++..+
T Consensus 371 ~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk 450 (620)
T PRK00955 371 KQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLK 450 (620)
T ss_pred cccccCccccccCcChHHHHHHHHHHhccCCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHH
Confidence 111 2458899999998778766665443 1122 1245777765433 799999999999999
Q ss_pred HhhcCCC--HHHHHHHHHHH-HHcCCCc--EEEEEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCC
Q 015808 204 FLTRRKG--HEKVMESINAA-IEVGYNP--VKVNCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGN 269 (400)
Q Consensus 204 ~ir~~~~--~~~v~~~i~~l-~~~g~~~--v~i~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~ 269 (400)
.+++... |+++++.++.+ .+.|+ . +...+++ .+|.+.+++.++++|++++++. ..+..|.|..++
T Consensus 451 ~M~K~~~~~~~~f~~~~~~i~~~~G~-~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT 522 (620)
T PRK00955 451 LMGKPSREVYDKFVKKFDRINKKLGK-KQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGT 522 (620)
T ss_pred HhCCCCHHHHHHHHHHHHHhhhhcCC-CccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCc
Confidence 8876532 55665555444 45676 4 3333333 3788999999999999999885 556778887663
No 148
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.95 E-value=1.2e-07 Score=94.95 Aligned_cols=196 Identities=16% Similarity=0.149 Sum_probs=131.5
Q ss_pred cccC-CCCCCCCCCCCC-----CCCC---------CCCCCCHHHHHHHHHHHHhCC--CCEE--EEECCCccchhh--HH
Q 015808 93 ERCN-LRCHYCMPPEGV-----DLTP---------KPQLLSLNEILRLAYLFVTSG--VDKI--RLTGGEPTVRKD--IE 151 (400)
Q Consensus 93 ~~CN-l~C~yC~~~~~~-----~~~~---------~~~~~s~e~i~~ii~~~~~~g--~~~i--~~~GGEPll~~~--l~ 151 (400)
..|+ -+|.||...... ++.. ....-+..++..-++++...| +.+| .|.||-++..+. ..
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~ 155 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQE 155 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHHHH
Confidence 5799 479999864321 0000 122345677777788888766 4444 789999998754 34
Q ss_pred HHHHHhhhcC-------------------------CCceEEEEecCcch-hhhHHHHHHcCCCeEEEecCCCCHHHHHHh
Q 015808 152 EACFHLSKLK-------------------------GLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFL 205 (400)
Q Consensus 152 ~~i~~~~~~~-------------------------g~~~~~i~TNG~ll-~~~~~~l~~~g~~~i~iSldg~~~~~~~~i 205 (400)
.+++.+.+.. .+..++|.|+.-.+ .+.+..|.+.|++.|.+.+++.++++.+.+
T Consensus 156 ~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~i 235 (522)
T TIGR01211 156 WFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERT 235 (522)
T ss_pred HHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHh
Confidence 4554443221 12256788888766 467799999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCChhHHHHHHHHHHh---CCC-eEEEEeeecCCCCCCcc------c
Q 015808 206 TRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRD---RPI-NIRFIEFMPFDGNVWNV------K 274 (400)
Q Consensus 206 r~~~~~~~v~~~i~~l~~~g~~~v~i~~~v-~~~~n~~el~~l~~~~~~---~gv-~~~~~~~~p~~~~~~~~------~ 274 (400)
.++.+.+.++++++.++++|+ .+.+.+.+ .+|.+.++..+.++.+.+ ++. .+.+....+..++.+.. .
T Consensus 236 nRght~~~v~~Ai~~lr~~G~-~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y 314 (522)
T TIGR01211 236 KRGHTVRDVVEATRLLRDAGL-KVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEY 314 (522)
T ss_pred CCCCCHHHHHHHHHHHHHcCC-eEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCC
Confidence 988889999999999999999 77666655 356666666666666653 444 35555555555543221 1
Q ss_pred CCCCHHHHHHHHHHh
Q 015808 275 KLVPYAEMLDTVVKK 289 (400)
Q Consensus 275 ~~~~~~e~~~~i~~~ 289 (400)
...+.++.++.+...
T Consensus 315 ~p~t~ee~v~l~~~~ 329 (522)
T TIGR01211 315 KPYTTEEAVELIVEI 329 (522)
T ss_pred CCCCHHHHHHHHHHH
Confidence 234455555554443
No 149
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.94 E-value=3.1e-08 Score=93.76 Aligned_cols=175 Identities=16% Similarity=0.206 Sum_probs=131.1
Q ss_pred cccCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCC-----CCEEEEE-CCCccchhhHHHHHHHhhhcC--
Q 015808 93 ERCNLR---CHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSG-----VDKIRLT-GGEPTVRKDIEEACFHLSKLK-- 161 (400)
Q Consensus 93 ~~CNl~---C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g-----~~~i~~~-GGEPll~~~l~~~i~~~~~~~-- 161 (400)
..|--. |.|||..-... .........+.+..++ ++| +..+..+ ||+++.+|++.+.+++++...
T Consensus 35 ~~c~~~~~~C~~cy~~v~~~---~~~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~~d~~c~p~le~~~~r~~~~~~d 109 (414)
T COG1625 35 KDCIPYRFGCDDCYLSVNEL---DTGFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGNGDTFCYPDLEPRGRRARLYYKD 109 (414)
T ss_pred CcCCCccccccceeeEEecc---cCCCCCHhHhhccccc--ccccccccccceeecCCCCcccCcchhhhhhHHHhhcCC
Confidence 345555 99998764321 1245556565554432 122 1245555 499999999999999998753
Q ss_pred -CCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC
Q 015808 162 -GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN 240 (400)
Q Consensus 162 -g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n 240 (400)
.+.-...++||..++.....+.++|++.|+||+.+.+|+...++.+...-+..++-++.+.+.++ .+..+.++.||.|
T Consensus 110 ~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~-~v~a~iVl~PGvN 188 (414)
T COG1625 110 DDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCI-EVHAQIVLCPGVN 188 (414)
T ss_pred ccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhh-heeeEEEEcCCcC
Confidence 13223345677777788888999999999999999999999999987777779999999999999 8999999999999
Q ss_pred -hhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc
Q 015808 241 -DDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV 273 (400)
Q Consensus 241 -~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~ 273 (400)
-+++.++++.+.++|.+ +..+.+.|.+-..++.
T Consensus 189 dge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~ 223 (414)
T COG1625 189 DGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNR 223 (414)
T ss_pred cHHHHHHHHHHHHHhCcCceeEEEeecceeeecCC
Confidence 58999999999999885 4445567877554443
No 150
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.92 E-value=2.1e-07 Score=83.38 Aligned_cols=217 Identities=15% Similarity=0.179 Sum_probs=153.1
Q ss_pred CchhhhhcCCCccEEEEEcCcccCCC--------CCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHh-CC--CCEEEEE
Q 015808 73 SDMLIDSFGRMHTYLRISLTERCNLR--------CHYCMPPEGVDLTPKPQLLS-LNEILRLAYLFVT-SG--VDKIRLT 140 (400)
Q Consensus 73 ~~~~~~~~~~~~~~l~i~iT~~CNl~--------C~yC~~~~~~~~~~~~~~~s-~e~i~~ii~~~~~-~g--~~~i~~~ 140 (400)
...+.+.||.++..+.+...-.||.| |.||......+.. ....++ .+++...++.+.+ .+ ---+.|.
T Consensus 12 ~~~lr~~fg~Kv~Kv~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~-~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ 90 (312)
T COG1242 12 NDYLREKFGEKVFKVTLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFA-GQPKISIAEQFKEQAERMHKKWKRGKYIAYFQ 90 (312)
T ss_pred HHHHHHHhCCeeEEEeccCCCCCCCCCCcccCCceeeecCCCCCccc-cCcccCHHHHHHHHHHHHHHhhcCCcEEEEEe
Confidence 34578899999999999999999975 9999876544332 223344 4677778876654 22 2234555
Q ss_pred CCCccchh-h-HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHH-Hc---CCCeEEEecCCCCHHHHHHhhcCCCHHHH
Q 015808 141 GGEPTVRK-D-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK-ES---GLTSVNISLDTLVPAKFEFLTRRKGHEKV 214 (400)
Q Consensus 141 GGEPll~~-~-l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~-~~---g~~~i~iSldg~~~~~~~~ir~~~~~~~v 214 (400)
-.--+..| + |.+..+.+-+..++.-++|-|-.--+++.+.+++ +. ---+|.+.|++..+++.+.+.++.+|+..
T Consensus 91 ~~TNTyApvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y 170 (312)
T COG1242 91 AYTNTYAPVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACY 170 (312)
T ss_pred ccccccCcHHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHHH
Confidence 44444443 2 6777777777678766777777666655543333 32 12378899999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEEE-ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcc------cCCCCHHHHHHHH
Q 015808 215 MESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV------KKLVPYAEMLDTV 286 (400)
Q Consensus 215 ~~~i~~l~~~g~~~v~i~~~v-~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~------~~~~~~~e~~~~i 286 (400)
.++++++++.|+ +|...+.+ .||.+.+++.+.++.+...+++ +....+.-..++++.. -...+.+++++.+
T Consensus 171 ~dav~r~rkrgI-kvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~ 249 (312)
T COG1242 171 VDAVKRLRKRGI-KVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELV 249 (312)
T ss_pred HHHHHHHHHcCC-eEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHH
Confidence 999999999999 77666655 5777888999999999998884 5555555555554322 2456778887777
Q ss_pred HHhCC
Q 015808 287 VKKFP 291 (400)
Q Consensus 287 ~~~~~ 291 (400)
.+...
T Consensus 250 ~d~le 254 (312)
T COG1242 250 CDQLE 254 (312)
T ss_pred HHHHH
Confidence 76654
No 151
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=98.86 E-value=1.3e-07 Score=95.54 Aligned_cols=187 Identities=17% Similarity=0.262 Sum_probs=122.2
Q ss_pred EEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCC-------EEEEECCC-ccchhhHHHHHHHh
Q 015808 86 YLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVD-------KIRLTGGE-PTVRKDIEEACFHL 157 (400)
Q Consensus 86 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~-------~i~~~GGE-Pll~~~l~~~i~~~ 157 (400)
.+.++++.+|+.+|.||...... ....++.+.+.+.+....+.+.. .+.+.|+. +...+.+..+...+
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~ 274 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHF----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLEL 274 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccc----cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHH
Confidence 68899999999999999886421 23445665555555444333322 33344443 23333333333222
Q ss_pred hhcC--CCceEEEEec---Ccchh-hh-HHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHH-HHHHHHHcCCCcE
Q 015808 158 SKLK--GLKTLAMTTN---GLTLA-RK-LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVME-SINAAIEVGYNPV 229 (400)
Q Consensus 158 ~~~~--g~~~~~i~TN---G~ll~-~~-~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~-~i~~l~~~g~~~v 229 (400)
.+.. +...+.++.. .-.++ +. +..+...|...+.+.+++.+++..+.+.+..+.+.+++ +++.+.+.+. .+
T Consensus 275 ~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~-~~ 353 (490)
T COG1032 275 IERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGL-RV 353 (490)
T ss_pred HHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCc-ee
Confidence 2211 1111222222 22233 33 36666778889999999999999999988888999995 9999999998 77
Q ss_pred EEEEEE-ecCCChhHHHHH---HHHHHhCCCe--EEEEeeecCCCCCCcccCCC
Q 015808 230 KVNCVV-MRGFNDDEICDF---VELTRDRPIN--IRFIEFMPFDGNVWNVKKLV 277 (400)
Q Consensus 230 ~i~~~v-~~~~n~~el~~l---~~~~~~~gv~--~~~~~~~p~~~~~~~~~~~~ 277 (400)
.+.+++ .+|.+.+++... ++++.+.+.. +....+.|..++++......
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~~~ 407 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMPKL 407 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCCCCchhhcccc
Confidence 777666 567788887776 7888888886 67788888888776654433
No 152
>PRK01254 hypothetical protein; Provisional
Probab=98.83 E-value=3.6e-07 Score=92.09 Aligned_cols=178 Identities=13% Similarity=0.181 Sum_probs=125.8
Q ss_pred EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC--CCCEEE---------EECC---C---------
Q 015808 87 LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTS--GVDKIR---------LTGG---E--------- 143 (400)
Q Consensus 87 l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~--g~~~i~---------~~GG---E--------- 143 (400)
..|.++.+|+.+|+||...... .+.-...+.+.|.+.++.+.+. |.+.+. ++|- .
T Consensus 374 ~sV~i~RGC~g~CSFCaI~~hq--Gr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 374 FSVNIMRGCFGGCSFCSITEHE--GRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred EEEEEccCCCCCCCcccccccc--CCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 5677789999999999887521 1112457899999989888752 666665 4442 2
Q ss_pred ---------ccc---hhhHHHHHHHhhhcCCCceEEEEec-Ccch----hhhHHHHHHcCCC-eEEEecCCCCHHHHHHh
Q 015808 144 ---------PTV---RKDIEEACFHLSKLKGLKTLAMTTN-GLTL----ARKLPKLKESGLT-SVNISLDTLVPAKFEFL 205 (400)
Q Consensus 144 ---------Pll---~~~l~~~i~~~~~~~g~~~~~i~TN-G~ll----~~~~~~l~~~g~~-~i~iSldg~~~~~~~~i 205 (400)
+-+ +..+.+|++.+++..|++.+.|.+. -+-+ ++.++.+.+..+. .+.|.+++.+++..+.+
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M 531 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARDLKGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKM 531 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHhCCCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHh
Confidence 222 2458899999998778876666543 1212 3455777776554 78899999999999988
Q ss_pred hcC--CCHHHHHHHHHHHHHc-CCCcEEEEEEE---ecCCChhHHHHHHHHHHhCCCeEEE-EeeecCC
Q 015808 206 TRR--KGHEKVMESINAAIEV-GYNPVKVNCVV---MRGFNDDEICDFVELTRDRPINIRF-IEFMPFD 267 (400)
Q Consensus 206 r~~--~~~~~v~~~i~~l~~~-g~~~v~i~~~v---~~~~n~~el~~l~~~~~~~gv~~~~-~~~~p~~ 267 (400)
++. ..+++..+.++.+.+. |. .+.+.+.+ .+|.+.+++.++++|+++.++.... ..|.|..
T Consensus 532 ~Kp~~~~~e~F~e~f~rirk~~gk-~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP 599 (707)
T PRK01254 532 MKPGMGSYDRFKELFDKYSKEAGK-EQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSP 599 (707)
T ss_pred CCCCcccHHHHHHHHHHHHHHCCC-CeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCC
Confidence 775 3588999988888765 54 45553333 3778889999999999999886443 4466655
No 153
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.77 E-value=6.4e-07 Score=83.11 Aligned_cols=140 Identities=20% Similarity=0.204 Sum_probs=113.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCcc----chhhHHHHHHHhhhcC-CCceEEEEecCcchhhhHHHHHHcCC
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT----VRKDIEEACFHLSKLK-GLKTLAMTTNGLTLARKLPKLKESGL 187 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl----l~~~l~~~i~~~~~~~-g~~~~~i~TNG~ll~~~~~~l~~~g~ 187 (400)
....++.++..++++.+.+.|+..|.+.+|+|. +.++..++++++++.. +.....+.+|+ .+.++.+.+.|+
T Consensus 12 ~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~ 88 (265)
T cd03174 12 EGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGV 88 (265)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCc
Confidence 456689999999999999999999999999997 6678888999998753 35333677777 567889999999
Q ss_pred CeEEEecCCCCHHHHHHhh-cCC---CHHHHHHHHHHHHHcCCCcEEEEEEEecC--CChhHHHHHHHHHHhCCCeE
Q 015808 188 TSVNISLDTLVPAKFEFLT-RRK---GHEKVMESINAAIEVGYNPVKVNCVVMRG--FNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 188 ~~i~iSldg~~~~~~~~ir-~~~---~~~~v~~~i~~l~~~g~~~v~i~~~v~~~--~n~~el~~l~~~~~~~gv~~ 258 (400)
+.|.+++++. + .|++.. +++ .++.+++.++.+++.|+ .+.+.+...-+ .|.+++.++++.+.+.|++.
T Consensus 89 ~~i~i~~~~s-~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 162 (265)
T cd03174 89 DEVRIFDSAS-E-THSRKNLNKSREEDLENAEEAIEAAKEAGL-EVEGSLEDAFGCKTDPEYVLEVAKALEEAGADE 162 (265)
T ss_pred CEEEEEEecC-H-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE
Confidence 9999999985 3 555542 112 28999999999999999 88888844444 79999999999999998753
No 154
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.72 E-value=6.6e-07 Score=81.77 Aligned_cols=199 Identities=19% Similarity=0.293 Sum_probs=140.5
Q ss_pred ccEEEEEcC--cccCCCCCCCCCCCCCCCCCCCCCCCH-----HHHHHHHHHHHh-CC-CCEEEEEC-CCccchhhHHHH
Q 015808 84 HTYLRISLT--ERCNLRCHYCMPPEGVDLTPKPQLLSL-----NEILRLAYLFVT-SG-VDKIRLTG-GEPTVRKDIEEA 153 (400)
Q Consensus 84 ~~~l~i~iT--~~CNl~C~yC~~~~~~~~~~~~~~~s~-----e~i~~ii~~~~~-~g-~~~i~~~G-GEPll~~~l~~~ 153 (400)
...+.+..| .+|-..|.||.+..+....+....++. -.+..+++.+.. .| .+.|.++- -+|-..+++..+
T Consensus 28 ~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~~~~d~~~i 107 (339)
T COG2516 28 PTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPRALNDLKLI 107 (339)
T ss_pred cceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeeccccccchhhhh
Confidence 344555556 899999999988653322222222221 111222222222 22 45666665 678888889889
Q ss_pred HHHhhhcCCCceEEEE--ecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCC----HHHHHHHHHHHHHc-CC
Q 015808 154 CFHLSKLKGLKTLAMT--TNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG----HEKVMESINAAIEV-GY 226 (400)
Q Consensus 154 i~~~~~~~g~~~~~i~--TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~----~~~v~~~i~~l~~~-g~ 226 (400)
++.+.-..+. .++|. -+.+-+.+.+....+.|.+.+.|.+|..+++.+++++...+ +++-++.+..+.++ |-
T Consensus 108 ~~~~~~~~~~-~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k 186 (339)
T COG2516 108 LERLHIRLGD-PITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGK 186 (339)
T ss_pred hhhhhhccCC-ceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc
Confidence 9988833355 45554 44444467788899999999999999999999999953332 99999999988876 42
Q ss_pred CcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEEeeecCCCCCCcccCCCCHHHHH
Q 015808 227 NPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEML 283 (400)
Q Consensus 227 ~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~~~~~~~~~e~~ 283 (400)
.++.+...+.-|.++.++.+++..+...|..+..+.|-|..++.+.+....+.+.+.
T Consensus 187 ~rv~ihliVglGesD~~~ve~~~~v~~~g~~v~Lfaf~P~~gt~me~r~~~pve~Yr 243 (339)
T COG2516 187 GRVGIHLIVGLGESDKDIVETIKRVRKRGGIVSLFAFTPLKGTQMENRKPPPVERYR 243 (339)
T ss_pred CCcceeEEeccCCchHHHHHHHHHHHhcCceEEEEEecccccccccCCCCCcHHHHH
Confidence 367777777778888899999999999999999999999988888877766654443
No 155
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.61 E-value=1.8e-06 Score=83.52 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=90.7
Q ss_pred eEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCh-hH
Q 015808 165 TLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND-DE 243 (400)
Q Consensus 165 ~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~-~e 243 (400)
.+++ ||- -++.++++.+.+++-++||+++.+|+...++.+...-.++++.++.+.++|+ .+..+.|+.||.|+ ++
T Consensus 120 yiTL-TNl--~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I-~~h~qiVlcPGiNDg~~ 195 (433)
T TIGR03279 120 YLTL-TNL--PPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRL-QLHAQVVVCPGINDGKH 195 (433)
T ss_pred eeee-cCC--CHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCC-eEEEEEEEcCCcCCHHH
Confidence 3454 774 3678999999999999999999999999999988888999999999999999 99999999999999 68
Q ss_pred HHHHHHHHHhC----CCeEEEEeeecCCCCCCcc
Q 015808 244 ICDFVELTRDR----PINIRFIEFMPFDGNVWNV 273 (400)
Q Consensus 244 l~~l~~~~~~~----gv~~~~~~~~p~~~~~~~~ 273 (400)
+++.++.+.++ .-.+..+...|++-+++..
T Consensus 196 L~~Ti~dL~~~~~~~~P~v~S~avVPVGlTk~R~ 229 (433)
T TIGR03279 196 LERTLRDLAQFHDGDWPTVLSVAVVPVGLTRFRP 229 (433)
T ss_pred HHHHHHHHHhhcccCCCceeEEEEEccccccCCC
Confidence 99999999987 3357888999998665543
No 156
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=98.42 E-value=1.9e-05 Score=75.80 Aligned_cols=197 Identities=18% Similarity=0.268 Sum_probs=125.5
Q ss_pred cccCC-CCCCCCCCCCC----CCCC---------CCCCCCHHHHHHHHHHHHhCCCC----EEEEECCCccchh-hH-HH
Q 015808 93 ERCNL-RCHYCMPPEGV----DLTP---------KPQLLSLNEILRLAYLFVTSGVD----KIRLTGGEPTVRK-DI-EE 152 (400)
Q Consensus 93 ~~CNl-~C~yC~~~~~~----~~~~---------~~~~~s~e~i~~ii~~~~~~g~~----~i~~~GGEPll~~-~l-~~ 152 (400)
..|+. +|.||...... ...+ ....=+..+...-++++...|.. .+.|.||--+..+ +. .+
T Consensus 75 ~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~~~yqe~ 154 (515)
T COG1243 75 HGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALSLEYQEW 154 (515)
T ss_pred CCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCCHHHHHH
Confidence 68998 99999876211 0000 01112355667778888887732 4677888755432 21 23
Q ss_pred HHHHhhhcCC-------------------CceEEEEecCcch-hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHH
Q 015808 153 ACFHLSKLKG-------------------LKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHE 212 (400)
Q Consensus 153 ~i~~~~~~~g-------------------~~~~~i~TNG~ll-~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~ 212 (400)
+++.+.+..+ ..-+.+.|-.-.. ++.+..+++.|++.|-+.+++..++...+..++.+.+
T Consensus 155 Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGHtve 234 (515)
T COG1243 155 FLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGHTVE 234 (515)
T ss_pred HHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCccHH
Confidence 3333322211 1136777876555 5678999999999999999999999999888888899
Q ss_pred HHHHHHHHHHHcCCCcEEEEEEE-ecCCCh-hHHHHHHHHHHhCCCeEEEEeeec---CCCCC----Cccc--CCCCHHH
Q 015808 213 KVMESINAAIEVGYNPVKVNCVV-MRGFND-DEICDFVELTRDRPINIRFIEFMP---FDGNV----WNVK--KLVPYAE 281 (400)
Q Consensus 213 ~v~~~i~~l~~~g~~~v~i~~~v-~~~~n~-~el~~l~~~~~~~gv~~~~~~~~p---~~~~~----~~~~--~~~~~~e 281 (400)
.+.++-+.++++|+ ++...+.. .+|.|. .+++.+.+.+.+-.+........| +.++. |... ...+.++
T Consensus 235 dv~~a~rLlKd~Gf-Kv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EE 313 (515)
T COG1243 235 DVVEATRLLKDAGF-KVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEE 313 (515)
T ss_pred HHHHHHHHHHhcCc-EEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCHHH
Confidence 99999999999999 66555433 333344 368888888877655444444444 34433 3222 3445566
Q ss_pred HHHHHHHhC
Q 015808 282 MLDTVVKKF 290 (400)
Q Consensus 282 ~~~~i~~~~ 290 (400)
.++.+.+.+
T Consensus 314 aVeli~~i~ 322 (515)
T COG1243 314 AVELIVEIY 322 (515)
T ss_pred HHHHHHHHH
Confidence 666555443
No 157
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=98.13 E-value=1.9e-06 Score=61.26 Aligned_cols=47 Identities=30% Similarity=0.390 Sum_probs=35.9
Q ss_pred C-CCCCeEEEccCCeEEecc-CCCCCCCchHHhhcCCCHHHHHHHHHHHHHhchh
Q 015808 327 C-AGCNRLRLLADGNFKVCL-FGPSEVSLRDPLRQNASDDELREIIGAAVKRKKA 379 (400)
Q Consensus 327 C-~~~~~l~I~~dG~v~pC~-~~~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~ 379 (400)
| ++...++|++||+||||. ....++.+||+ + ++|.+||++...++.+
T Consensus 1 C~~~~~~~~I~~dG~v~pC~~~~~~~~~~Gni-~-----~~l~eiw~s~~~~~~r 49 (64)
T PF13186_consen 1 CGAGWNSLYIDPDGDVYPCCHDYDPEFKIGNI-E-----DSLEEIWNSPKFREFR 49 (64)
T ss_pred CCCcCeEEEEeeCccEEeCCCCCCCCeEEeec-C-----CCHHHHHCCHHHHHHH
Confidence 5 456789999999999995 46678888887 5 4599999775555543
No 158
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=97.87 E-value=0.00025 Score=63.71 Aligned_cols=188 Identities=19% Similarity=0.257 Sum_probs=121.6
Q ss_pred EEEEE-cCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCC----ccc-hhhHHHHHHHhhh
Q 015808 86 YLRIS-LTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE----PTV-RKDIEEACFHLSK 159 (400)
Q Consensus 86 ~l~i~-iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE----Pll-~~~l~~~i~~~~~ 159 (400)
..+|. +...|.-.|+||...... ....+++.+-....+.+++.|+..|.++.=+ |-. .-+|.+-+++++.
T Consensus 111 TATIMlmGDTCTRGCRFCsVKTsR----~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~ 186 (360)
T KOG2672|consen 111 TATIMLMGDTCTRGCRFCSVKTSR----NPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKE 186 (360)
T ss_pred eEEEEeecCccccCcceeeeecCC----CCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHh
Confidence 34444 478999999999987532 2333444344444555667899999998622 222 2347888888886
Q ss_pred cCCCceEEEEe--cCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhh-cCCCHHHHHHHHHHHHHcCCCcEEEEE--
Q 015808 160 LKGLKTLAMTT--NGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLT-RRKGHEKVMESINAAIEVGYNPVKVNC-- 233 (400)
Q Consensus 160 ~~g~~~~~i~T--NG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir-~~~~~~~v~~~i~~l~~~g~~~v~i~~-- 233 (400)
... .+-|.+ --..=+ +.++.+...|++.+.-.+++. ++....+| ++.+|...+..++.+++... .+.-.+
T Consensus 187 k~p--~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETV-e~Ltp~VRD~RA~yrQSL~VLk~aK~~~P-~litktsi 262 (360)
T KOG2672|consen 187 KAP--EILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETV-EELTPFVRDPRANYRQSLSVLKHAKEVKP-GLITKTSI 262 (360)
T ss_pred hCc--ccchhhcCccccCchHHHHHHHhcCccceecchhhH-HhcchhhcCcccchHHhHHHHHHHHhhCC-Cceehhhh
Confidence 421 222221 110001 356888899999999888885 55555555 34559999999999999865 333333
Q ss_pred EEecCCChhHHHHHHHHHHhCCCeEE-EEeeecCCCCCCcccCCCCHHH
Q 015808 234 VVMRGFNDDEICDFVELTRDRPINIR-FIEFMPFDGNVWNVKKLVPYAE 281 (400)
Q Consensus 234 ~v~~~~n~~el~~l~~~~~~~gv~~~-~~~~~p~~~~~~~~~~~~~~~e 281 (400)
.+.-|.+++++...++.+++.++++. +-+|++...........++.+.
T Consensus 263 Mlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpek 311 (360)
T KOG2672|consen 263 MLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEK 311 (360)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHH
Confidence 23346788999999999999999854 4567776555555555555543
No 159
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=97.84 E-value=0.0035 Score=60.48 Aligned_cols=193 Identities=21% Similarity=0.335 Sum_probs=123.7
Q ss_pred hhhhcCCCccE--EEEEcCcccCCC----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--------E-
Q 015808 76 LIDSFGRMHTY--LRISLTERCNLR----CHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRL--------T- 140 (400)
Q Consensus 76 ~~~~~~~~~~~--l~i~iT~~CNl~----C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~--------~- 140 (400)
.++.+-..+.+ ..|+...+|+.+ |+||-..-. ......+.|.+.+.++.+...|+..+.| +
T Consensus 172 vv~qHP~yp~~vi~EiETyRGC~r~~~ggCSFCtEp~~----g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~ 247 (560)
T COG1031 172 VVKQHPNYPEYVICEIETYRGCPRRVSGGCSFCTEPVR----GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYG 247 (560)
T ss_pred HHHhCCCCcceEEEEEeeccCCcccccCCCccccCcCc----CCcccCCHHHHHHHHHHHHHhccceeeeccccceeeec
Confidence 34443344434 457778999998 999986532 3456678999999999999998877665 2
Q ss_pred ----CCC-ccchhh-HHHHHHHhhhc-CCCceEEEE-ecCcch------hhhH-HHHHHcC--CCeEEEecCCCCHHHHH
Q 015808 141 ----GGE-PTVRKD-IEEACFHLSKL-KGLKTLAMT-TNGLTL------ARKL-PKLKESG--LTSVNISLDTLVPAKFE 203 (400)
Q Consensus 141 ----GGE-Pll~~~-l~~~i~~~~~~-~g~~~~~i~-TNG~ll------~~~~-~~l~~~g--~~~i~iSldg~~~~~~~ 203 (400)
||| |--+|+ +.++.+-++.. ++++.++|. -|...+ ++++ +.+.+.+ =+...+.+++.||...+
T Consensus 248 ~~~~g~e~P~PnPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r 327 (560)
T COG1031 248 ADDNGGEVPRPNPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVAR 327 (560)
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHh
Confidence 343 334566 67777777754 356555553 243333 1233 4455554 24788999999988776
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCC-------Cc--EEEEEEE-ecCCChhHHHHHHHHH---HhCCCeEE---EEeeecCC
Q 015808 204 FLTRRKGHEKVMESINAAIEVGY-------NP--VKVNCVV-MRGFNDDEICDFVELT---RDRPINIR---FIEFMPFD 267 (400)
Q Consensus 204 ~ir~~~~~~~v~~~i~~l~~~g~-------~~--v~i~~~v-~~~~n~~el~~l~~~~---~~~gv~~~---~~~~~p~~ 267 (400)
.-.=..+-+.++++++...+.|- +. -+||++. .+|.+.+..+--.+|+ .+.|.-++ .-+.+++.
T Consensus 328 ~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fp 407 (560)
T COG1031 328 KNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFP 407 (560)
T ss_pred hccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecC
Confidence 54444568999999999999753 11 2566665 4566666654444444 44566444 44677787
Q ss_pred CCCCc
Q 015808 268 GNVWN 272 (400)
Q Consensus 268 ~~~~~ 272 (400)
+++..
T Consensus 408 gT~~~ 412 (560)
T COG1031 408 GTPMW 412 (560)
T ss_pred CCchh
Confidence 77654
No 160
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.79 E-value=0.0055 Score=56.68 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=124.8
Q ss_pred EEEEcCcccCCC----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CC---CC-EEEEE-CCCccchh----h-HH
Q 015808 87 LRISLTERCNLR----CHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-SG---VD-KIRLT-GGEPTVRK----D-IE 151 (400)
Q Consensus 87 l~i~iT~~CNl~----C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-~g---~~-~i~~~-GGEPll~~----~-l~ 151 (400)
+.|..|.+|-.. |.+|.+... ......+.|.+.+.++.+.. .. -. .|.++ .|--|-.. + -.
T Consensus 49 ~vILrT~GC~w~~~~gC~MCgY~~d----~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~ 124 (358)
T COG1244 49 TVILRTRGCRWYREGGCYMCGYPAD----SAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARR 124 (358)
T ss_pred EEEEecCCcceeccCCcceeccccc----cCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCHHHHH
Confidence 445568888654 888876542 13566888887777665532 21 22 46554 46544332 2 45
Q ss_pred HHHHHhhhcCCCceEEEEecCcchh-hhHHHHHHc--C-CCeEEEecCCCCHHHH-HHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 152 EACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLKES--G-LTSVNISLDTLVPAKF-EFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 152 ~~i~~~~~~~g~~~~~i~TNG~ll~-~~~~~l~~~--g-~~~i~iSldg~~~~~~-~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
.+++.+.+...+..+.+.|-.-.++ +.+..+.+. | ...|.|.|++.+++.. +.+.++-+|++.+++++.++++|+
T Consensus 125 ~Il~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~ 204 (358)
T COG1244 125 YILERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGA 204 (358)
T ss_pred HHHHHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCC
Confidence 7888888766677889999887775 555666654 3 3489999999887776 456666669999999999999999
Q ss_pred CcEEEEEEEecCC-Ch-hHHHHHHHHHHhCCCeEEEEeeecC--C-C---------CCCcccCCCCHHHHHHHHHHhCC
Q 015808 227 NPVKVNCVVMRGF-ND-DEICDFVELTRDRPINIRFIEFMPF--D-G---------NVWNVKKLVPYAEMLDTVVKKFP 291 (400)
Q Consensus 227 ~~v~i~~~v~~~~-n~-~el~~l~~~~~~~gv~~~~~~~~p~--~-~---------~~~~~~~~~~~~e~~~~i~~~~~ 291 (400)
.+....++-+-+ +. +-+.+.+.-+....-....+.+.|. + + +.+.++...+..|+++...+..+
T Consensus 205 -~vktYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~ 282 (358)
T COG1244 205 -KVKTYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGP 282 (358)
T ss_pred -ceeEEEEecccccChHHHHHHHHHHHHHhccCCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCC
Confidence 777776665422 22 2355555554432222233444443 2 1 22223334556677777666655
No 161
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=97.54 E-value=0.00073 Score=64.50 Aligned_cols=196 Identities=15% Similarity=0.232 Sum_probs=118.5
Q ss_pred EEEEcCcccCCCCCCCCCCCCCCCCCCC-CCCC-HHHHHH--------HHHHHHh-CC-----------CCEEEEE-CCC
Q 015808 87 LRISLTERCNLRCHYCMPPEGVDLTPKP-QLLS-LNEILR--------LAYLFVT-SG-----------VDKIRLT-GGE 143 (400)
Q Consensus 87 l~i~iT~~CNl~C~yC~~~~~~~~~~~~-~~~s-~e~i~~--------ii~~~~~-~g-----------~~~i~~~-GGE 143 (400)
..+-++-+|--+|.+|+..........- -.++ ++.|.. .+.+++. .| +.+-.++ =||
T Consensus 285 meltPslacanKcvfcWrh~tnpv~~~wrwk~d~pevil~gal~lhy~mikqmkgvpgvk~Er~~ea~evrhcalslVge 364 (601)
T KOG1160|consen 285 MELTPSLACANKCVFCWRHDTNPVGEIWRWKMDAPEVILKGALYLHYNMIKQMKGVPGVKAERFEEAEEVRHCALSLVGE 364 (601)
T ss_pred CCCCCCcccCCCCceeeeccCCcccceEEEecCCchhhhHHHHHHHHHHHHHhhcCCCcCHHHHHhhhhhhhheeeeecc
Confidence 3455678999999999987543221100 0011 222221 2222221 11 2223333 389
Q ss_pred ccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCC---HHHHHHHHHH
Q 015808 144 PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG---HEKVMESINA 220 (400)
Q Consensus 144 Pll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~ 220 (400)
|.++|.+..+++.+.+. .+ .-.+.||+... +.+..+.. +..+-+|+|..++.....+-+.-. +++.++.++.
T Consensus 365 pi~yp~in~f~k~lH~k-~i-ssflvtnaq~p-e~~rnvk~--vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~ 439 (601)
T KOG1160|consen 365 PIMYPEINPFAKLLHQK-LI-SSFLVTNAQFP-EDIRNVKP--VTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKA 439 (601)
T ss_pred cccchhhhHHHHHHHhc-cc-hHHhcccccCh-HHHhchhh--hheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999884 67 45678999765 44455544 568899999987766555433221 5777777777
Q ss_pred HHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCC-eE---EEEeeecC-CCCCCcccCCCCHHHHHHHHHHh
Q 015808 221 AIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI-NI---RFIEFMPF-DGNVWNVKKLVPYAEMLDTVVKK 289 (400)
Q Consensus 221 l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv-~~---~~~~~~p~-~~~~~~~~~~~~~~e~~~~i~~~ 289 (400)
+++..- ...+++++..+.|.+++.+..+.... |. ++ .-..+.-. ...+........++++++...+.
T Consensus 440 lk~K~q-rtvyRlTlVkg~n~dd~~Ayfnlv~r-glp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL 511 (601)
T KOG1160|consen 440 LKKKQQ-RTVYRLTLVKGWNSDDLPAYFNLVSR-GLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVFEL 511 (601)
T ss_pred HHHhhc-ceEEEEEEeccccccccHHHHHHHhc-cCCceEEEeceeEecccccCcccccCccHHHHHHHHHHHH
Confidence 775544 67889999999999999999888765 33 21 11122221 12233333444566776666654
No 162
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=97.52 E-value=0.0078 Score=58.71 Aligned_cols=140 Identities=21% Similarity=0.260 Sum_probs=103.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEE
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~i 192 (400)
....++.++..++++.+.+.|+..|-+ |-|-+.++-.+.++.+.+. +. ...+.+-+....+.++...+.|++.|.+
T Consensus 19 ~~~~~s~e~k~~ia~~L~~~GV~~IE~--G~p~~~~~~~e~i~~i~~~-~~-~~~i~~~~r~~~~di~~a~~~g~~~i~i 94 (378)
T PRK11858 19 PGVVFTNEEKLAIARMLDEIGVDQIEA--GFPAVSEDEKEAIKAIAKL-GL-NASILALNRAVKSDIDASIDCGVDAVHI 94 (378)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEE--eCCCcChHHHHHHHHHHhc-CC-CeEEEEEcccCHHHHHHHHhCCcCEEEE
Confidence 356799999999999999999998886 5788877766778888764 55 4556665544566788888999999999
Q ss_pred ecCCCCHHHHHHhhcCCC--HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 193 SLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
++...+......++.... ++.+.+.++.+++.|. .+.+.+.-....+.+.+.++++.+.+.|++
T Consensus 95 ~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 160 (378)
T PRK11858 95 FIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL-YVSFSAEDASRTDLDFLIEFAKAAEEAGAD 160 (378)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeccCCCCCHHHHHHHHHHHHhCCCC
Confidence 998754333334433211 6777788899999998 777765433225678899999999988875
No 163
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.40 E-value=0.016 Score=53.51 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEe
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 193 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iS 193 (400)
...++.++..++++.+.+.|+..|-+. =|.+.+.-.+.++.+.+. +. ...+..=.....+.++...+.|++.|.+.
T Consensus 14 ~~~~~~~~k~~i~~~L~~~Gv~~iE~g--~p~~~~~~~e~~~~l~~~-~~-~~~~~~~~r~~~~~v~~a~~~g~~~i~i~ 89 (259)
T cd07939 14 GVAFSREEKLAIARALDEAGVDEIEVG--IPAMGEEEREAIRAIVAL-GL-PARLIVWCRAVKEDIEAALRCGVTAVHIS 89 (259)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe--cCCCCHHHHHHHHHHHhc-CC-CCEEEEeccCCHHHHHHHHhCCcCEEEEE
Confidence 467999999999999999999998884 465554434666777653 22 12222222223466788888999999998
Q ss_pred cCCCCHHHHHHhhcCC--CHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 194 LDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 194 ldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
+...+......++... .++.+.+.++.+++.|+ .+.+++.-....+.+.+.++++.+.+.|++
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 154 (259)
T cd07939 90 IPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL-FVSVGAEDASRADPDFLIEFAEVAQEAGAD 154 (259)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEeeccCCCCCHHHHHHHHHHHHHCCCC
Confidence 8663322233333211 16788899999999999 787777655445778899999999888875
No 164
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=97.38 E-value=0.02 Score=52.85 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=97.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEE
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~i 192 (400)
....++.++..++++.+.+.|++.|-+.. |-..++..+.++.+.+. +. ...+.+-+....+.++...+.|++.|.+
T Consensus 15 ~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~--P~~~~~~~~~~~~l~~~-~~-~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 15 ANAFFDTEDKIEIAKALDAFGVDYIELTS--PAASPQSRADCEAIAKL-GL-KAKILTHIRCHMDDARIAVETGVDGVDL 90 (262)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEC--CCCCHHHHHHHHHHHhC-CC-CCcEEEEecCCHHHHHHHHHcCcCEEEE
Confidence 45679999999999999999999998875 77778777777777653 32 1222222222346688888999999999
Q ss_pred ecCCCCHHHHHHhhcCC---CHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 193 SLDTLVPAKFEFLTRRK---GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
.+-.. +.......+.. ..+.+.+.++.+++.|+ .+.+...-.-+.+.+.+.++++.+.+.|++
T Consensus 91 ~~~~S-~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~-~v~~~~eda~r~~~~~l~~~~~~~~~~g~~ 156 (262)
T cd07948 91 VFGTS-PFLREASHGKSITEIIESAVEVIEFVKSKGI-EVRFSSEDSFRSDLVDLLRVYRAVDKLGVN 156 (262)
T ss_pred EEecC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeeCCCCHHHHHHHHHHHHHcCCC
Confidence 88763 33222222211 16777888899999998 777776433335678899999999988875
No 165
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=97.38 E-value=0.016 Score=56.19 Aligned_cols=140 Identities=19% Similarity=0.176 Sum_probs=100.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEE
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~i 192 (400)
....++.++..++++.+.+.|+..|-+ |-|...++-.+.++.+.+. +. ...+.+-+....+.++...+.|++.|.+
T Consensus 15 ~~~~~s~~~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~e~i~~i~~~-~~-~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 15 PGVSLTVEQKVEIARKLDELGVDVIEA--GFPIASEGEFEAIKKISQE-GL-NAEICSLARALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCChHHHHHHHHHHhc-CC-CcEEEEEcccCHHHHHHHHHcCcCEEEE
Confidence 356699999999999999999998886 5677776666777777764 33 2344443333457788889999999999
Q ss_pred ecCCCCHHHHHHhhcCC--CHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 193 SLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
.+-..+......++... .++.+.+.++.+++.|. .+.+...-....+.+.+.++++.+.+.|++
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~-~v~~~~eda~r~~~~~l~~~~~~~~~~g~~ 156 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGL-IVEFSAEDATRTDIDFLIKVFKRAEEAGAD 156 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-EEEEEEeecCCCCHHHHHHHHHHHHhCCCC
Confidence 98874322222333221 27888899999999998 777765333225778889999988888875
No 166
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=97.15 E-value=0.014 Score=53.40 Aligned_cols=187 Identities=19% Similarity=0.272 Sum_probs=106.0
Q ss_pred CCCccEEEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEECCCccchhh--HHHHHHHh
Q 015808 81 GRMHTYLRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKD--IEEACFHL 157 (400)
Q Consensus 81 ~~~~~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~-~g~~~i~~~GGEPll~~~--l~~~i~~~ 157 (400)
||-++.+.|.+|+.|=+.|.||.+....+ -.+..++++++..+.-.+.+ .-+..+.++.|=- -++| .+++|+-+
T Consensus 50 GrCIsLlKiLlTN~CiyDC~YCINr~s~~--~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi-~~~DyTmE~mi~va 126 (404)
T COG4277 50 GRCISLLKILLTNFCIYDCAYCINRSSND--TPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVI-KNPDYTMEEMIEVA 126 (404)
T ss_pred CccHHHHHHHHhhhHHHhhHHHhccccCC--CcccccCHHHHHHHHHHHHHHhhhhhheeccccc-cCcchHHHHHHHHH
Confidence 55677777889999999999998865332 34567899999887655544 3366677765531 1233 34555544
Q ss_pred hhc---C---CCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-------
Q 015808 158 SKL---K---GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV------- 224 (400)
Q Consensus 158 ~~~---~---g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~------- 224 (400)
+.. . |..+..+..-+ -.+.+.+.-. ..+.|+|.++-+.+.-.+.+...+....+...+..++..
T Consensus 127 r~LRle~~f~GYIHlK~IPga--s~~li~eagl-yadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~ 203 (404)
T COG4277 127 RILRLEHKFRGYIHLKIIPGA--SPDLIKEAGL-YADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAED 203 (404)
T ss_pred HHHhhccccCcEEEEEecCCC--CHHHHHHHhh-hhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccc
Confidence 432 1 21122221111 1122333222 267888888888887788777766655555555544431
Q ss_pred --------CCCcE--EEEEEEe-cCCChhHHHHHHHHHHh-CCC-eEEEEeeecCCCCCCcc
Q 015808 225 --------GYNPV--KVNCVVM-RGFNDDEICDFVELTRD-RPI-NIRFIEFMPFDGNVWNV 273 (400)
Q Consensus 225 --------g~~~v--~i~~~v~-~~~n~~el~~l~~~~~~-~gv-~~~~~~~~p~~~~~~~~ 273 (400)
.+-+- ..++.+. .+.++.++....+.+.. .++ .+.+..|+|+.+++...
T Consensus 204 ~~r~r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp 265 (404)
T COG4277 204 KRRKRHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLP 265 (404)
T ss_pred hhhhccCccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCc
Confidence 01011 2233332 23455566666655544 445 46677888887665544
No 167
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=96.92 E-value=0.067 Score=52.01 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=96.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEE
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~i 192 (400)
....++.++..++++.+.+.|++.|-+ |=|-..+.=.+.++.+.+. +. ...+.+=+....+.++...+.|++.|.+
T Consensus 16 ~~~~~s~~~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~e~i~~i~~~-~~-~~~i~~~~r~~~~di~~a~~~g~~~i~i 91 (365)
T TIGR02660 16 PGVAFTAAEKLAIARALDEAGVDELEV--GIPAMGEEERAVIRAIVAL-GL-PARLMAWCRARDADIEAAARCGVDAVHI 91 (365)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCCHHHHHHHHHHHHc-CC-CcEEEEEcCCCHHHHHHHHcCCcCEEEE
Confidence 346699999999999999999998887 4566665545667777654 22 2233333333457788888999999999
Q ss_pred ecCCCCHHHHHHhhcCCC--HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 193 SLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
.+-..+......++.... .+.+.+.++.+++.|. .+.+.+.-....+.+.+.++++.+.+.|++
T Consensus 92 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 157 (365)
T TIGR02660 92 SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL-FVSVGGEDASRADPDFLVELAEVAAEAGAD 157 (365)
T ss_pred EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC-EEEEeecCCCCCCHHHHHHHHHHHHHcCcC
Confidence 886643233333332211 6677788999999998 777665543334667888888888888875
No 168
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.71 E-value=0.065 Score=50.73 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=112.9
Q ss_pred EEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEC-----CCccchhhHH----HHHHHhh
Q 015808 88 RISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG-----GEPTVRKDIE----EACFHLS 158 (400)
Q Consensus 88 ~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G-----GEPll~~~l~----~~i~~~~ 158 (400)
.|.+..+|--.|.||...+.. ..-...+.+.+...+....+.|+..|.++. =+-.+-..+. ++++.+-
T Consensus 190 Ii~intgclgaCtyckTkhar---g~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~iP 266 (547)
T KOG4355|consen 190 IISINTGCLGACTYCKTKHAR---GLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIP 266 (547)
T ss_pred EEEeccccccccccccccccc---cccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHhcc
Confidence 366789999999999875421 233456788888888888888998998863 1223333333 3444444
Q ss_pred hcCCCceEEEEecCcchhhhH---HHHHHcCC--CeEEEecCCCCHHHHHHhhcC---CCHHHHHHHHHHHHHcCCCcEE
Q 015808 159 KLKGLKTLAMTTNGLTLARKL---PKLKESGL--TSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVK 230 (400)
Q Consensus 159 ~~~g~~~~~i~TNG~ll~~~~---~~l~~~g~--~~i~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~ 230 (400)
+.... .+.+ ||.-.+-+.+ ...+.... ..+.+.+++..+...-.+.+. ..|..+.+.+.... +.+.
T Consensus 267 e~cml-r~gm-TnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterV----Pgi~ 340 (547)
T KOG4355|consen 267 ESCML-RAGM-TNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERV----PGIT 340 (547)
T ss_pred hhhhh-hhcC-CCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhC----CCcE
Confidence 32233 4555 6665443333 22222211 245666677666555544432 22677766554432 2455
Q ss_pred EEEEE---ecCCChhHHHHHHHHHHhCCCe-EEEEeeecCCCCCCcccCCCCHHH
Q 015808 231 VNCVV---MRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNVKKLVPYAE 281 (400)
Q Consensus 231 i~~~v---~~~~n~~el~~l~~~~~~~gv~-~~~~~~~p~~~~~~~~~~~~~~~e 281 (400)
|-+-+ .++.+++++++.++++++..+. +...+|.|-.|++...-..++..+
T Consensus 341 IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkki~a~~ 395 (547)
T KOG4355|consen 341 IATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKKIPAVE 395 (547)
T ss_pred EeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhcccHHH
Confidence 55544 4667889999999999998885 555679998887766545555443
No 169
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=96.64 E-value=0.22 Score=46.29 Aligned_cols=141 Identities=21% Similarity=0.135 Sum_probs=91.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcC--CCceEEEEe----cCcch--hhhHHHHHH
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK--GLKTLAMTT----NGLTL--ARKLPKLKE 184 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~--g~~~~~i~T----NG~ll--~~~~~~l~~ 184 (400)
....++.++..++++.+.+.|++.|-+ |=|..++.-.+.++.+.+.. +. .+.... .+... +..++..++
T Consensus 13 ~~~~~s~e~k~~i~~~L~~~Gv~~IE~--G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~a~~ 89 (273)
T cd07941 13 EGISFSVEDKLRIARKLDELGVDYIEG--GWPGSNPKDTEFFARAKKLKLKHA-KLAAFGSTRRAGVKAEEDPNLQALLE 89 (273)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEe--cCCcCCHHHHHHHHHHHHcCCCCc-EEEEEecccccCCCccchHHHHHHHh
Confidence 356799999999999999999999988 44556666566666665532 22 222111 12111 234677888
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcC--CCHHHHHHHHHHHHHcCCCcEEEEEEEe-c--CCChhHHHHHHHHHHhCCCe
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVM-R--GFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~~v~-~--~~n~~el~~l~~~~~~~gv~ 257 (400)
.|++.|.+.+-..+....+.+... ..++.+.+.++.+++.|+ .+.++.... . ..+.+.+.++++.+.+.|++
T Consensus 90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~-~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~ 166 (273)
T cd07941 90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGR-EVIFDAEHFFDGYKANPEYALATLKAAAEAGAD 166 (273)
T ss_pred CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-eEEEeEEeccccCCCCHHHHHHHHHHHHhCCCC
Confidence 999999988876322222222211 127888899999999998 777654322 1 13556677888888888775
No 170
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=96.62 E-value=0.26 Score=45.70 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhc-CCCceEEEEecCcchhhhHHHHHHcC----CC
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLTLARKLPKLKESG----LT 188 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~-~g~~~~~i~TNG~ll~~~~~~l~~~g----~~ 188 (400)
...++.++...+++.+.+.|+..|-+.. |-.+++=.+.++.+.+. ++. .+...+.+ ..+.++...+.+ ++
T Consensus 14 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg~--~~~~~~~~~~~~~l~~~~~~~-~~~~l~r~--~~~~v~~a~~~~~~~~~~ 88 (268)
T cd07940 14 GVSLTPEEKLEIARQLDELGVDVIEAGF--PAASPGDFEAVKRIAREVLNA-EICGLARA--VKKDIDAAAEALKPAKVD 88 (268)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCHHHHHHHHHHHHhCCCC-EEEEEccC--CHhhHHHHHHhCCCCCCC
Confidence 4578999999999999999999988842 44444323566666552 233 34433333 235566667777 88
Q ss_pred eEEEecCCCCHHHHHHhhcCC---CHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 189 SVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 189 ~i~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
.|.+.+-. ++....+..+.. .++.+.+.++.+++.|+ .+.+.+.-....+.+.+.++++.+.+.|++
T Consensus 89 ~i~i~~~~-s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 158 (268)
T cd07940 89 RIHTFIAT-SDIHLKYKLKKTREEVLERAVEAVEYAKSHGL-DVEFSAEDATRTDLDFLIEVVEAAIEAGAT 158 (268)
T ss_pred EEEEEecC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEeeecCCCCCHHHHHHHHHHHHHcCCC
Confidence 88887754 333322222221 26888899999999998 777766554445677889999998888875
No 171
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=96.58 E-value=0.29 Score=45.21 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=89.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEE-----CCC-----ccchhhHHHHHHHhhh-cCCCceEEEEecCcchhhhHHH
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLT-----GGE-----PTVRKDIEEACFHLSK-LKGLKTLAMTTNGLTLARKLPK 181 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~-----GGE-----Pll~~~l~~~i~~~~~-~~g~~~~~i~TNG~ll~~~~~~ 181 (400)
....++.++..++++.+.+.|+..|-+. ||. |....+ .+.++.+++ .++.+...+..++....+.++.
T Consensus 15 ~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~-~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 93 (263)
T cd07943 15 VRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTD-EEYLEAAAEALKQAKLGVLLLPGIGTVDDLKM 93 (263)
T ss_pred CCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCCh-HHHHHHHHHhccCCEEEEEecCCccCHHHHHH
Confidence 4556999999999999999999998886 221 222222 344454432 2344222344455444567888
Q ss_pred HHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeE
Q 015808 182 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 182 l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
..+.|++.|.+.+... + .+.+.+.++.+++.|+ .+.++..-....+.+.+.++++.+.+.|++.
T Consensus 94 a~~~g~~~iri~~~~s--~----------~~~~~~~i~~ak~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~ 157 (263)
T cd07943 94 AADLGVDVVRVATHCT--E----------ADVSEQHIGAARKLGM-DVVGFLMMSHMASPEELAEQAKLMESYGADC 157 (263)
T ss_pred HHHcCCCEEEEEechh--h----------HHHHHHHHHHHHHCCC-eEEEEEEeccCCCHHHHHHHHHHHHHcCCCE
Confidence 8889999999876442 1 2467889999999998 7777663333357788999999999888763
No 172
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.57 E-value=0.32 Score=46.63 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=89.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEEC-----------CCccchhhHHHHHHHhhh-cCCCceEE-EEecCcchhhhH
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTG-----------GEPTVRKDIEEACFHLSK-LKGLKTLA-MTTNGLTLARKL 179 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~G-----------GEPll~~~l~~~i~~~~~-~~g~~~~~-i~TNG~ll~~~~ 179 (400)
....++.++..++++.+.+.|+..|-+.- |-| ..++ .+.++.+.+ .++. .+. +...|.-..+.+
T Consensus 18 ~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~-~~~~-~e~i~~~~~~~~~~-~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 18 VRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFG-AHTD-EEYIEAAAEVVKQA-KIAALLLPGIGTVDDL 94 (337)
T ss_pred CCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCC-CCCH-HHHHHHHHHhCCCC-EEEEEeccCcccHHHH
Confidence 35669999999999999999999988852 222 2223 234444432 2233 333 233443334668
Q ss_pred HHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeE
Q 015808 180 PKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 180 ~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
+...+.|++.|.|...-. + .+.+.+.++.+++.|. .+.++.......+.+++.++++.+.+.|++.
T Consensus 95 ~~a~~~gvd~iri~~~~~-e-----------~~~~~~~i~~ak~~G~-~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~ 160 (337)
T PRK08195 95 KMAYDAGVRVVRVATHCT-E-----------ADVSEQHIGLARELGM-DTVGFLMMSHMAPPEKLAEQAKLMESYGAQC 160 (337)
T ss_pred HHHHHcCCCEEEEEEecc-h-----------HHHHHHHHHHHHHCCC-eEEEEEEeccCCCHHHHHHHHHHHHhCCCCE
Confidence 888899999999886331 1 3568899999999999 7877766555457788999999999988753
No 173
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.52 E-value=0.36 Score=46.20 Aligned_cols=132 Identities=16% Similarity=0.201 Sum_probs=89.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEE-----CC-----CccchhhHHHHHHHhhhcCCCceEE-EEecCcchhhhHHH
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLT-----GG-----EPTVRKDIEEACFHLSKLKGLKTLA-MTTNGLTLARKLPK 181 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~-----GG-----EPll~~~l~~~i~~~~~~~g~~~~~-i~TNG~ll~~~~~~ 181 (400)
....++.++..+++..+.+.|+..|-++ || -|...+++..+-+.....++. .+. +..-|....+.++.
T Consensus 17 ~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~-~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 17 IRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRA-KVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCC-EEEEEeccCccCHHHHHH
Confidence 3566999999999999999999999886 21 122334443222222222233 333 33334333466888
Q ss_pred HHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeE
Q 015808 182 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 182 l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
..+.|++.|.|...-. + .+.+.+.++.+++.|. .+.++.......+.+++.++++.+.+.|++.
T Consensus 96 a~~~gvd~iri~~~~~-e-----------~d~~~~~i~~ak~~G~-~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~ 159 (333)
T TIGR03217 96 AYDAGARTVRVATHCT-E-----------ADVSEQHIGMARELGM-DTVGFLMMSHMTPPEKLAEQAKLMESYGADC 159 (333)
T ss_pred HHHCCCCEEEEEeccc-h-----------HHHHHHHHHHHHHcCC-eEEEEEEcccCCCHHHHHHHHHHHHhcCCCE
Confidence 8889999999886431 1 2567899999999999 7776665544467788999999999888763
No 174
>PRK09389 (R)-citramalate synthase; Provisional
Probab=96.35 E-value=0.33 Score=48.99 Aligned_cols=141 Identities=17% Similarity=0.113 Sum_probs=95.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEE
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~i 192 (400)
....++.++-.++++.+.+.|++.|-+ |-|-..++=.+.++.+.+. +. ...+..-+....+.++...+.|.+.|.+
T Consensus 17 ~g~~~s~e~K~~ia~~L~~~Gv~~IE~--G~p~~~~~d~e~v~~i~~~-~~-~~~i~a~~r~~~~di~~a~~~g~~~v~i 92 (488)
T PRK09389 17 PGVSLTPEEKLEIARKLDELGVDVIEA--GSAITSEGEREAIKAVTDE-GL-NAEICSFARAVKVDIDAALECDVDSVHL 92 (488)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEE--eCCcCCHHHHHHHHHHHhc-CC-CcEEEeecccCHHHHHHHHhCCcCEEEE
Confidence 456799999999999999999998877 3465555445666777653 33 2344333333456688888999999999
Q ss_pred ecCCCCHHHHHHhhcCC--CHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeE
Q 015808 193 SLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
.+...+......++... .++.+.+.++.+++.|. .+.+...-....+.+.+.++++.+.+.|++.
T Consensus 93 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~ 159 (488)
T PRK09389 93 VVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGL-IVELSGEDASRADLDFLKELYKAGIEAGADR 159 (488)
T ss_pred EEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEeeCCCCCHHHHHHHHHHHHhCCCCE
Confidence 98774322222332211 17888888889999998 7766654332245667888888888887753
No 175
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.29 E-value=0.092 Score=47.69 Aligned_cols=167 Identities=20% Similarity=0.252 Sum_probs=100.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhc-CCCceEEEEecCcc--hhhhHHHHHHcCCCeEE
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLT--LARKLPKLKESGLTSVN 191 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~-~g~~~~~i~TNG~l--l~~~~~~l~~~g~~~i~ 191 (400)
..++.++..++++.+.+.|+..|-+. -|...++-.+.++.+.+. ... .+...+-... +...+..+.+.|++.+.
T Consensus 9 ~~~~~~~k~~i~~~L~~~Gv~~iEvg--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~g~~~i~ 85 (237)
T PF00682_consen 9 VAFSTEEKLEIAKALDEAGVDYIEVG--FPFASEDDFEQVRRLREALPNA-RLQALCRANEEDIERAVEAAKEAGIDIIR 85 (237)
T ss_dssp TT--HHHHHHHHHHHHHHTTSEEEEE--HCTSSHHHHHHHHHHHHHHHSS-EEEEEEESCHHHHHHHHHHHHHTTSSEEE
T ss_pred CCcCHHHHHHHHHHHHHhCCCEEEEc--ccccCHHHHHHhhhhhhhhccc-ccceeeeehHHHHHHHHHhhHhccCCEEE
Confidence 34899999999999999999998887 555555433333333221 112 3333332211 22234556678999999
Q ss_pred EecCCCCHHHHHHhhcCC---CHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEEeeecCCC
Q 015808 192 ISLDTLVPAKFEFLTRRK---GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDG 268 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~ 268 (400)
+.+... +.......+.. ..+.+.+.++.+++.|. .+.+++.-....+.+++.++++.+.+.|++. +.+....|
T Consensus 86 i~~~~s-~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--i~l~Dt~G 161 (237)
T PF00682_consen 86 IFISVS-DLHIRKNLNKSREEALERIEEAVKYAKELGY-EVAFGCEDASRTDPEELLELAEALAEAGADI--IYLADTVG 161 (237)
T ss_dssp EEEETS-HHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS-EEEEEETTTGGSSHHHHHHHHHHHHHHT-SE--EEEEETTS
T ss_pred ecCccc-HHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-ceEeCccccccccHHHHHHHHHHHHHcCCeE--EEeeCccC
Confidence 998773 43333333321 17888888899999999 7766664433357788999999999888764 23332222
Q ss_pred CCCcccCCCCHHHHHHHHHHhCCC
Q 015808 269 NVWNVKKLVPYAEMLDTVVKKFPG 292 (400)
Q Consensus 269 ~~~~~~~~~~~~e~~~~i~~~~~~ 292 (400)
. . .+....+++..+.+.++.
T Consensus 162 ~-~---~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 162 I-M---TPEDVAELVRALREALPD 181 (237)
T ss_dssp --S----HHHHHHHHHHHHHHSTT
T ss_pred C-c---CHHHHHHHHHHHHHhccC
Confidence 1 1 122345777777777753
No 176
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=96.26 E-value=0.48 Score=44.08 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=93.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEE-CCCccchh---hHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCC
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLT-GGEPTVRK---DIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 187 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~-GGEPll~~---~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~ 187 (400)
.....++.|+-.++++.+.+.|++.|-+. +..|-.-| +..++++.+....+. .+.... ...+.++...+.|+
T Consensus 12 ~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~-~~~~~~---~~~~dv~~A~~~g~ 87 (274)
T cd07938 12 NEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGV-RYSALV---PNLRGAERALAAGV 87 (274)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCC-EEEEEC---CCHHHHHHHHHcCc
Confidence 34567999999999999999999999886 34444323 344566666553344 333222 23456888889999
Q ss_pred CeEEEecCCCCHHHHHHhhcC--CCHHHHHHHHHHHHHcCCCcEEEEEEEec------CCChhHHHHHHHHHHhCCCe
Q 015808 188 TSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMR------GFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 188 ~~i~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~~v~~------~~n~~el~~l~~~~~~~gv~ 257 (400)
+.|.+.+-..+......++.. ..++.+.+.++.+++.|. .+.++....- -.+.+.+.++++.+.+.|++
T Consensus 88 ~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~-~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~ 164 (274)
T cd07938 88 DEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGL-RVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCD 164 (274)
T ss_pred CEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 999998877432222223221 117888889999999998 6655443221 13557788888888888875
No 177
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.03 E-value=0.75 Score=42.59 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=89.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEE---CCCcc-----chhhHHHHHHHhhhc--CCCceEEEEecCcch-hhhHHH
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLT---GGEPT-----VRKDIEEACFHLSKL--KGLKTLAMTTNGLTL-ARKLPK 181 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~---GGEPl-----l~~~l~~~i~~~~~~--~g~~~~~i~TNG~ll-~~~~~~ 181 (400)
....++.++..+++..+.+.|+..|-+. +++-. ...+ .+.++.+.+. .+. .+......... .+.+..
T Consensus 13 ~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~ 90 (266)
T cd07944 13 NNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSKGNT-KIAVMVDYGNDDIDLLEP 90 (266)
T ss_pred cCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhccCC-EEEEEECCCCCCHHHHHH
Confidence 3456899999999999999999988775 33211 1111 2233333222 133 44544544332 355666
Q ss_pred HHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 182 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 182 l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
..+.|++.|.|++.. ..++.+.+.++.+++.|+ .+.++..-..+.+.+.+.++++.+.+.|++
T Consensus 91 a~~~gv~~iri~~~~------------~~~~~~~~~i~~ak~~G~-~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~ 153 (266)
T cd07944 91 ASGSVVDMIRVAFHK------------HEFDEALPLIKAIKEKGY-EVFFNLMAISGYSDEELLELLELVNEIKPD 153 (266)
T ss_pred HhcCCcCEEEEeccc------------ccHHHHHHHHHHHHHCCC-eEEEEEEeecCCCHHHHHHHHHHHHhCCCC
Confidence 777889998888633 247999999999999999 888887665557888999999999988875
No 178
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=96.01 E-value=0.83 Score=43.86 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=90.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEEC-CCccchh---hHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCC
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG-GEPTVRK---DIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 187 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G-GEPll~~---~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~ 187 (400)
.....++.|+-.++++.+.+.|+..|-..- ..|-.-| +..++++.+++..+. .+.... ...+.++..++.|+
T Consensus 60 ~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~-~~~~l~---~n~~die~A~~~g~ 135 (347)
T PLN02746 60 NEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGA-RFPVLT---PNLKGFEAAIAAGA 135 (347)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCC-ceeEEc---CCHHHHHHHHHcCc
Confidence 345679999999999999999999887752 2332222 445667777654344 222221 23467888889999
Q ss_pred CeEEEecCCCCHHHHHHhhcCCC----HHHHHHHHHHHHHcCCCcEEEEE--EEe-c--C-CChhHHHHHHHHHHhCCCe
Q 015808 188 TSVNISLDTLVPAKFEFLTRRKG----HEKVMESINAAIEVGYNPVKVNC--VVM-R--G-FNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 188 ~~i~iSldg~~~~~~~~ir~~~~----~~~v~~~i~~l~~~g~~~v~i~~--~v~-~--~-~n~~el~~l~~~~~~~gv~ 257 (400)
+.|.+.+-. ++....+..+ .+ .+.+.+.++.+++.|. .+.+.+ .+. + + .+.+.+.++++.+.+.|++
T Consensus 136 ~~v~i~~s~-Sd~h~~~n~~-~t~~e~l~~~~~~v~~Ak~~Gl-~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad 212 (347)
T PLN02746 136 KEVAVFASA-SESFSKSNIN-CSIEESLVRYREVALAAKKHSI-PVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCY 212 (347)
T ss_pred CEEEEEEec-CHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCC-eEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCC
Confidence 999999955 4433332222 23 6666678888899998 665433 232 1 1 2456788888888888875
No 179
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=95.87 E-value=0.51 Score=48.77 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=92.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECC------CccchhhHHHHHHHhhhc-CCCceEEEEecCcch-----------
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGG------EPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLTL----------- 175 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GG------EPll~~~l~~~i~~~~~~-~g~~~~~i~TNG~ll----------- 175 (400)
...++.++...++..+.+.|+..|-+.|| =|++..+=.+.++.+++. ++. .+.+...|..+
T Consensus 21 ~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~-~lqml~Rg~n~vg~~~ypddvv 99 (593)
T PRK14040 21 ATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNT-PQQMLLRGQNLLGYRHYADDVV 99 (593)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCC-eEEEEecCcceeccccCcHHHH
Confidence 45689999999999999999999999887 566765544555555543 233 55555665321
Q ss_pred hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcE--EEEEEEecCCChhHHHHHHHHHHh
Q 015808 176 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPV--KVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 176 ~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v--~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
...++...+.|++.+.|. |+.++ .+.+...++.+++.|. .+ .+.++..+..+.+.+.++++.+.+
T Consensus 100 ~~~v~~a~~~Gid~~rif-d~lnd-----------~~~~~~ai~~ak~~G~-~~~~~i~yt~~p~~~~~~~~~~a~~l~~ 166 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVF-DAMND-----------PRNLETALKAVRKVGA-HAQGTLSYTTSPVHTLQTWVDLAKQLED 166 (593)
T ss_pred HHHHHHHHhcCCCEEEEe-eeCCc-----------HHHHHHHHHHHHHcCC-eEEEEEEEeeCCccCHHHHHHHHHHHHH
Confidence 233566678899999988 33322 3678889999999998 64 455555665677788888888888
Q ss_pred CCCeE
Q 015808 254 RPINI 258 (400)
Q Consensus 254 ~gv~~ 258 (400)
.|++.
T Consensus 167 ~Gad~ 171 (593)
T PRK14040 167 MGVDS 171 (593)
T ss_pred cCCCE
Confidence 88763
No 180
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.82 E-value=0.61 Score=46.48 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=90.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCC------ccchhhHHHHHHHhhhc-CCCceEEEEecC-----c------ch
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE------PTVRKDIEEACFHLSKL-KGLKTLAMTTNG-----L------TL 175 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE------Pll~~~l~~~i~~~~~~-~g~~~~~i~TNG-----~------ll 175 (400)
...++.++...+++.+.+.|+..|-+.||. .+++++=.+.++.+++. ++. .+.+...| + ..
T Consensus 20 ~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~-~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 20 ATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKT-KLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCC-EEEEEeccccccccccCchhhH
Confidence 446999999999999999999999999886 45666656666776653 344 44433433 2 12
Q ss_pred hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEE--EEEEEecCCChhHHHHHHHHHHh
Q 015808 176 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVK--VNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 176 ~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~--i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
.+.++...+.|++.|.|..... +. +.+.+.++.+++.|. .+. +.++..+-.+.+.+.++++.+.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~~ln-d~-----------~n~~~~v~~ak~~G~-~v~~~i~~t~~p~~~~~~~~~~a~~l~~ 165 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALN-DV-----------RNLETAVKATKKAGG-HAQVAISYTTSPVHTIDYFVKLAKEMQE 165 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecC-cH-----------HHHHHHHHHHHHcCC-eEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 3445677888999888886552 21 236668889999998 654 44444443466778888888888
Q ss_pred CCCeE
Q 015808 254 RPINI 258 (400)
Q Consensus 254 ~gv~~ 258 (400)
.|++.
T Consensus 166 ~Gad~ 170 (448)
T PRK12331 166 MGADS 170 (448)
T ss_pred cCCCE
Confidence 88763
No 181
>PRK00915 2-isopropylmalate synthase; Validated
Probab=95.61 E-value=0.84 Score=46.48 Aligned_cols=141 Identities=19% Similarity=0.137 Sum_probs=89.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhc-CCCceEEEEecCc--chhhhHHHHHHcCCCe
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGL--TLARKLPKLKESGLTS 189 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~-~g~~~~~i~TNG~--ll~~~~~~l~~~g~~~ 189 (400)
....++.++-.++++.+.+.|++.|-+ |=|..++.=.+.++.+.+. .+. .+...+-+. -++..++.+.+.+...
T Consensus 19 ~g~~~s~e~K~~ia~~L~~~Gv~~IE~--G~p~~s~~d~~~v~~i~~~~~~~-~i~a~~r~~~~did~a~~a~~~~~~~~ 95 (513)
T PRK00915 19 PGASLTVEEKLQIAKQLERLGVDVIEA--GFPASSPGDFEAVKRIARTVKNS-TVCGLARAVKKDIDAAAEALKPAEAPR 95 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCChHHHHHHHHHHhhCCCC-EEEEEccCCHHHHHHHHHHhhcCCCCE
Confidence 345699999999999999999998877 5676766534455655432 222 333333221 1222234444778888
Q ss_pred EEEecCCCCHHHHHHhhcCCC--HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 190 VNISLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 190 i~iSldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
|.+.+...+......++.... ++.+.+.++.+++.|. .+.+.+.-....+.+.+.++++.+.+.|++
T Consensus 96 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~-~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~ 164 (513)
T PRK00915 96 IHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTD-DVEFSAEDATRTDLDFLCRVVEAAIDAGAT 164 (513)
T ss_pred EEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 999887743332333332211 6777889999999998 666554322224566788888888888875
No 182
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=95.60 E-value=0.17 Score=47.25 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhCC--CCEEEE--ECCCccchhh-H-HHHHHHhhhc------------------CCCc--eEEEEecC
Q 015808 119 LNEILRLAYLFVTSG--VDKIRL--TGGEPTVRKD-I-EEACFHLSKL------------------KGLK--TLAMTTNG 172 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g--~~~i~~--~GGEPll~~~-l-~~~i~~~~~~------------------~g~~--~~~i~TNG 172 (400)
.++...-+++++.+| +.+|.| .||--+..|+ . ..+|..+.+. ...+ -+.|.|-.
T Consensus 152 ~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRP 231 (554)
T KOG2535|consen 152 YLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRP 231 (554)
T ss_pred HHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEeecCc
Confidence 566677788888887 555554 5776554443 1 1222222210 0111 34555654
Q ss_pred c-chhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCh-hHHHHHHH
Q 015808 173 L-TLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFND-DEICDFVE 249 (400)
Q Consensus 173 ~-ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v-~~~~n~-~el~~l~~ 249 (400)
- -+...+..++..|+..+.|.+++.-++.-+...++.+...+.+....++++|+ +|...+.- .++... .+++.|.+
T Consensus 232 DyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~-KvV~HMMPdLPNVg~eRDieqF~E 310 (554)
T KOG2535|consen 232 DYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGF-KVVAHMMPDLPNVGMERDIEQFKE 310 (554)
T ss_pred ccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCc-eeehhhCCCCCCCchhhhHHHHHH
Confidence 3 34677899999999999999999666655555555669999999999999999 55444322 222222 47899999
Q ss_pred HHHhCCC
Q 015808 250 LTRDRPI 256 (400)
Q Consensus 250 ~~~~~gv 256 (400)
++..-.+
T Consensus 311 ~FenP~F 317 (554)
T KOG2535|consen 311 YFENPAF 317 (554)
T ss_pred HhcCcCc
Confidence 9887544
No 183
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=95.43 E-value=0.84 Score=45.69 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=90.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCCcc------chhhHHHHHHHhhhc-CCCceEEEEecCc---c---hhhh--
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKL-KGLKTLAMTTNGL---T---LARK-- 178 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl------l~~~l~~~i~~~~~~-~g~~~~~i~TNG~---l---l~~~-- 178 (400)
...++.++...+++.+.+.|+..|-+.||.-+ ++++-.+.++.+++. ++. .+.+...|. - ..+.
T Consensus 19 ~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~-~l~~l~r~~N~~G~~~~~dDvv 97 (467)
T PRK14041 19 ATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNT-KIQMLLRGQNLVGYRHYADDVV 97 (467)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCC-EEEEEeccccccCcccccchhh
Confidence 35699999999999999999999999888643 566656677777654 344 344433331 1 1222
Q ss_pred ---HHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEE--EEEecCCChhHHHHHHHHHHh
Q 015808 179 ---LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--CVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 179 ---~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~~v~~~~n~~el~~l~~~~~~ 253 (400)
++...+.|++.|.|..-. ++ .+.+...++.+++.|. .+... +++.+..+.+.+.++++.+.+
T Consensus 98 ~~fv~~A~~~Gvd~irif~~l-nd-----------~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~t~e~~~~~a~~l~~ 164 (467)
T PRK14041 98 ELFVKKVAEYGLDIIRIFDAL-ND-----------IRNLEKSIEVAKKHGA-HVQGAISYTVSPVHTLEYYLEFARELVD 164 (467)
T ss_pred HHHHHHHHHCCcCEEEEEEeC-CH-----------HHHHHHHHHHHHHCCC-EEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 566678899988888654 22 3567788899999998 66533 334444566778888888888
Q ss_pred CCCeE
Q 015808 254 RPINI 258 (400)
Q Consensus 254 ~gv~~ 258 (400)
.|++.
T Consensus 165 ~Gad~ 169 (467)
T PRK14041 165 MGVDS 169 (467)
T ss_pred cCCCE
Confidence 88753
No 184
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=95.43 E-value=0.49 Score=45.39 Aligned_cols=169 Identities=14% Similarity=0.232 Sum_probs=101.2
Q ss_pred EEEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccch-------------------
Q 015808 87 LRISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR------------------- 147 (400)
Q Consensus 87 l~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~------------------- 147 (400)
..+.+..+|+.=|.||..+-.. ...+..+.+-|.+.+..+.+.|++.|++.|-.---+
T Consensus 222 AFvSiMRGCdNMCtyCiVpftr---GreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~G 298 (552)
T KOG2492|consen 222 AFVSIMRGCDNMCTYCIVPFTR---GRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPG 298 (552)
T ss_pred hHHHHHhccccccceEEEeccC---CcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCC
Confidence 3466779999999999886432 234445678888888888889999999876321111
Q ss_pred ------h-----hHHHHHHHhhhcC-CCceEEEEec-CcchhhhHHHHH-HcCC--CeEEEecCCCCHHHHHHhhcCCCH
Q 015808 148 ------K-----DIEEACFHLSKLK-GLKTLAMTTN-GLTLARKLPKLK-ESGL--TSVNISLDTLVPAKFEFLTRRKGH 211 (400)
Q Consensus 148 ------~-----~l~~~i~~~~~~~-g~~~~~i~TN-G~ll~~~~~~l~-~~g~--~~i~iSldg~~~~~~~~ir~~~~~ 211 (400)
+ .|..+++.+.... .+ ++.+++- ..-.++++..|+ +... ..+.....+.+....+.++++-+-
T Consensus 299 Fst~yK~K~gGl~Fa~LLd~vs~~~Pem-R~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysr 377 (552)
T KOG2492|consen 299 FSTVYKPKQGGLRFAHLLDQVSRADPEM-RIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSR 377 (552)
T ss_pred ceeeecccCCCccHHHHHHHHhhhCcce-EEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCCh
Confidence 1 1456666665432 23 5555331 122244444444 3322 244555555566777777776654
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEEec---CCChhHHHHHHHHHHhCCCeEEE
Q 015808 212 EKVMESINAAIEVGYNPVKVNCVVMR---GFNDDEICDFVELTRDRPINIRF 260 (400)
Q Consensus 212 ~~v~~~i~~l~~~g~~~v~i~~~v~~---~~n~~el~~l~~~~~~~gv~~~~ 260 (400)
+..++-....... ++.|++..-+.. |+|.++-.+++-++.+.|.++.+
T Consensus 378 eayl~lv~~Irs~-iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~ 428 (552)
T KOG2492|consen 378 EAYLELVAHIRSM-IPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVF 428 (552)
T ss_pred HhhhhHHHHHHhh-CCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeee
Confidence 4444444444443 224444443333 46889999999999997776544
No 185
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=95.25 E-value=2.4 Score=39.72 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=88.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEEC-CCccchhh---HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCC
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTG-GEPTVRKD---IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 188 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~G-GEPll~~~---l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~ 188 (400)
....++.++-.++++.+.+.|+..|-+.- -.|-..|. -.+.++.+.+..+. .+.... ...+.++...+.|++
T Consensus 19 ~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~-~~~~l~---~~~~~ie~A~~~g~~ 94 (287)
T PRK05692 19 EKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGV-TYAALT---PNLKGLEAALAAGAD 94 (287)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCC-eEEEEe---cCHHHHHHHHHcCCC
Confidence 35679999999999999999999888752 22322222 34666666554344 332221 124567777888999
Q ss_pred eEEEecCCCCHHHHHHhhcCCC----HHHHHHHHHHHHHcCCCcEEEEEE--Ee-c---CCChhHHHHHHHHHHhCCCe
Q 015808 189 SVNISLDTLVPAKFEFLTRRKG----HEKVMESINAAIEVGYNPVKVNCV--VM-R---GFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 189 ~i~iSldg~~~~~~~~ir~~~~----~~~v~~~i~~l~~~g~~~v~i~~~--v~-~---~~n~~el~~l~~~~~~~gv~ 257 (400)
.|.+.+... +. |....-+.+ .+.+.+.++.+++.|. .+..... +. + -.+.+.+.++++.+.+.|++
T Consensus 95 ~v~i~~~~s-~~-~~~~n~~~~~~e~l~~~~~~v~~ak~~g~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d 170 (287)
T PRK05692 95 EVAVFASAS-EA-FSQKNINCSIAESLERFEPVAEAAKQAGV-RVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY 170 (287)
T ss_pred EEEEEEecC-HH-HHHHHhCCCHHHHHHHHHHHHHHHHHcCC-EEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999997663 33 332222233 4567778888888888 6653333 32 1 12556788889988888875
No 186
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=95.22 E-value=1.2 Score=46.06 Aligned_cols=131 Identities=18% Similarity=0.153 Sum_probs=92.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCC------ccchhhHHHHHHHhhh-cCCCceEEEEecC-----c------ch
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE------PTVRKDIEEACFHLSK-LKGLKTLAMTTNG-----L------TL 175 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE------Pll~~~l~~~i~~~~~-~~g~~~~~i~TNG-----~------ll 175 (400)
...++.++...+++.+.+.|+..|-+.||. ++++++-.+.++.+++ .++. .+.+...| + .+
T Consensus 15 ~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~-~l~~L~Rg~N~~G~~~ypddvv 93 (582)
T TIGR01108 15 ATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNT-PLQMLLRGQNLLGYRHYADDVV 93 (582)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCC-EEEEEEccccccccccCchhhH
Confidence 346999999999999999999999998874 6677776677777765 2344 45444333 2 12
Q ss_pred hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEE--EEEecCCChhHHHHHHHHHHh
Q 015808 176 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--CVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 176 ~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~~v~~~~n~~el~~l~~~~~~ 253 (400)
...++...+.|++.+.|..-.. + .+.+...++.+++.|. .+.+. ++..+-.+.+.+.++++.+.+
T Consensus 94 ~~~v~~a~~~Gvd~irif~~ln-d-----------~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALN-D-----------PRNLQAAIQAAKKHGA-HAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecC-c-----------HHHHHHHHHHHHHcCC-EEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 2345667788999888875442 2 2467888899999998 66654 333343466788888888888
Q ss_pred CCCeE
Q 015808 254 RPINI 258 (400)
Q Consensus 254 ~gv~~ 258 (400)
.|++.
T Consensus 161 ~Gad~ 165 (582)
T TIGR01108 161 MGVDS 165 (582)
T ss_pred cCCCE
Confidence 88763
No 187
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.05 E-value=1.2 Score=46.14 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCc------cchhhHHHHHHHhhhc-CCCceEEEEecC---cc--------hh
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEP------TVRKDIEEACFHLSKL-KGLKTLAMTTNG---LT--------LA 176 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEP------ll~~~l~~~i~~~~~~-~g~~~~~i~TNG---~l--------l~ 176 (400)
..++.++...++..+.+.|+..|-+.||.- +++++-.+.++.+++. ++. .+.+...| .- +.
T Consensus 21 tr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~-~l~~l~Rg~N~~gy~~ypd~vv~ 99 (592)
T PRK09282 21 TRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNT-PLQMLLRGQNLVGYRHYPDDVVE 99 (592)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCC-EEEEEeccccccccccccchhhH
Confidence 469999999999999999999999998864 5677766666776654 344 45554443 21 22
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE--EEecCCChhHHHHHHHHHHhC
Q 015808 177 RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC--VVMRGFNDDEICDFVELTRDR 254 (400)
Q Consensus 177 ~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~--~v~~~~n~~el~~l~~~~~~~ 254 (400)
..++...+.|++.+.|..-. ++ .+.+...++.+++.|. .+.... +..+-++.+.+.++++.+.+.
T Consensus 100 ~~v~~A~~~Gvd~irif~~l-nd-----------~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~t~~~~~~~a~~l~~~ 166 (592)
T PRK09282 100 KFVEKAAENGIDIFRIFDAL-ND-----------VRNMEVAIKAAKKAGA-HVQGTISYTTSPVHTIEKYVELAKELEEM 166 (592)
T ss_pred HHHHHHHHCCCCEEEEEEec-Ch-----------HHHHHHHHHHHHHcCC-EEEEEEEeccCCCCCHHHHHHHHHHHHHc
Confidence 34566778899988887544 22 2567788899999998 666444 334434667788888888888
Q ss_pred CCeE
Q 015808 255 PINI 258 (400)
Q Consensus 255 gv~~ 258 (400)
|++.
T Consensus 167 Gad~ 170 (592)
T PRK09282 167 GCDS 170 (592)
T ss_pred CCCE
Confidence 8764
No 188
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=94.92 E-value=2.9 Score=38.99 Aligned_cols=142 Identities=19% Similarity=0.200 Sum_probs=89.8
Q ss_pred CCCCCCCHHHHHHHHHHH-HhCCCCEEEEECCCccchhhHHHHHHHhhhcCC----CceEEEEecCcchhhhHHHHHHcC
Q 015808 112 PKPQLLSLNEILRLAYLF-VTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG----LKTLAMTTNGLTLARKLPKLKESG 186 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~-~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g----~~~~~i~TNG~ll~~~~~~l~~~g 186 (400)
..+..++.++-.++++.+ .+.|++.|-+. -|-.+++-.+.+..+.+... +..+.+..= ......++..++.|
T Consensus 11 ~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg--~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~A~~~g 87 (280)
T cd07945 11 TSGVSFSPSEKLNIAKILLQELKVDRIEVA--SARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGF-VDGDKSVDWIKSAG 87 (280)
T ss_pred CCCCccCHHHHHHHHHHHHHHhCCCEEEec--CCCCCHHHHHHHHHHHHHhhhhccccCcEEEEe-cCcHHHHHHHHHCC
Confidence 345679999999999996 67799888775 46677754455555543210 001122110 11134577788889
Q ss_pred CCeEEEecCCCCHHHHHHhhcC--CCHHHHHHHHHHHHHcCCCcEEEEEEEec---CCChhHHHHHHHHHHhCCCe
Q 015808 187 LTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMR---GFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 187 ~~~i~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~~v~~---~~n~~el~~l~~~~~~~gv~ 257 (400)
++.|.+.+-..+......++.. ..++.+.+.++.+++.|. .+.+...-.. ..+.+.+.++++.+.+.|++
T Consensus 88 ~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~ 162 (280)
T cd07945 88 AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIK 162 (280)
T ss_pred CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCC
Confidence 9999999876332222233221 127888888999999998 6665554211 13667888999988888875
No 189
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=94.70 E-value=2.4 Score=43.24 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=94.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecC------c--chhhhHHHHHH
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNG------L--TLARKLPKLKE 184 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG------~--ll~~~~~~l~~ 184 (400)
....++.++-.++++.+.+.|++.|-. |=|..++.-.+.++.+.+. ++....|..-+ . ..+..++.+++
T Consensus 16 ~g~~~s~eeKl~Ia~~L~~~GVd~IE~--G~p~~s~~d~~~v~~i~~~-~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~ 92 (526)
T TIGR00977 16 EGVSFSLEDKIRIAERLDDLGIHYIEG--GWPGANPKDVQFFWQLKEM-NFKNAKIVAFCSTRRPHKKVEEDKMLQALIK 92 (526)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCChHHHHHHHHHHHh-CCCCcEEEEEeeecCCCCCCchHHHHHHHhc
Confidence 456799999999999999999988876 6777777766667766542 32112222222 1 11345688888
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCC--CHHHHHHHHHHHHHcCCCcEEEEEE-E---ecCCChhHHHHHHHHHHhCCCeE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNPVKVNCV-V---MRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~v~i~~~-v---~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
.+...|.+.+-+.+-.....++... ..+.+.+.++.+++.|. .|.+... + .+ .+.+.+.++++.+.+.|++.
T Consensus 93 ~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~-~V~~~~e~f~D~~r-~~~~~l~~~~~~a~~aGad~ 170 (526)
T TIGR00977 93 AETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGD-EVIYDAEHFFDGYK-ANPEYALATLATAQQAGADW 170 (526)
T ss_pred CCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeeccc-CCHHHHHHHHHHHHhCCCCe
Confidence 8888899988875333333333221 27777888999999998 6654433 1 13 46678889999888888753
No 190
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=94.40 E-value=2.4 Score=39.48 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=87.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCCc-----c-chhhHHHHHHHhhhc-CCCceEEEEecC---cc--------h
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEP-----T-VRKDIEEACFHLSKL-KGLKTLAMTTNG---LT--------L 175 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEP-----l-l~~~l~~~i~~~~~~-~g~~~~~i~TNG---~l--------l 175 (400)
...++.++..+++..+.+.|+..|-+.+|-- . +..+=.+.++.+.+. .+. .+...+.+ .- .
T Consensus 15 ~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~-~l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 15 ATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNT-PLQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred ceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCC-ceehhcccccccCccCCCcHHH
Confidence 3568999999999999999999988876431 1 122224445555442 122 33333333 11 2
Q ss_pred hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE--ecCCChhHHHHHHHHHHh
Q 015808 176 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV--MRGFNDDEICDFVELTRD 253 (400)
Q Consensus 176 ~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v--~~~~n~~el~~l~~~~~~ 253 (400)
.+.++...+.|++.|.|+.... + ++.+.+.++.+++.|. .+.+.... ....+.+.+.++++.+.+
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~-~-----------~~~~~~~i~~ak~~G~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALN-D-----------VRNLEVAIKAVKKAGK-HVEGAICYTGSPVHTLEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCC-h-----------HHHHHHHHHHHHHCCC-eEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 3456777788999999976442 2 5889999999999998 66554322 223577889999999999
Q ss_pred CCCeE
Q 015808 254 RPINI 258 (400)
Q Consensus 254 ~gv~~ 258 (400)
.|++.
T Consensus 161 ~Ga~~ 165 (275)
T cd07937 161 MGADS 165 (275)
T ss_pred cCCCE
Confidence 88763
No 191
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=94.33 E-value=2.6 Score=43.03 Aligned_cols=141 Identities=20% Similarity=0.146 Sum_probs=89.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhc--CCCceEEEEe---c-Ccc--hhhhHHHHHH
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLKTLAMTT---N-GLT--LARKLPKLKE 184 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~--~g~~~~~i~T---N-G~l--l~~~~~~l~~ 184 (400)
....++.++..++++.+.+.|++.|-+ |=|...++=.++++.+.+. .+. .+...+ . +.. .+..++.+.+
T Consensus 20 ~g~~~s~e~Kl~ia~~L~~~Gvd~IEv--G~p~as~~d~~~~~~i~~~~l~~~-~i~~~~~~~~~~i~~~~d~~~e~~~~ 96 (524)
T PRK12344 20 EGISFSVEDKLRIARKLDELGVDYIEG--GWPGSNPKDTEFFKRAKELKLKHA-KLAAFGSTRRAGVSAEEDPNLQALLD 96 (524)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEE--cCCcCChhHHHHHHHHHHhCCCCc-EEEEEeeccccCCCcccHHHHHHHHh
Confidence 356799999999999999999998887 4455666545666666542 122 222211 1 111 1345677888
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcC--CCHHHHHHHHHHHHHcCCCcEEEEEEEe-cC--CChhHHHHHHHHHHhCCCe
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVM-RG--FNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~~v~-~~--~n~~el~~l~~~~~~~gv~ 257 (400)
.|.+.|.+.+-+.+......++.. ..++.+.+.++.+++.|. .+.+.+.-. .+ .+.+.+.++++.+.+.|++
T Consensus 97 ~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~-~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad 173 (524)
T PRK12344 97 AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGR-EVIFDAEHFFDGYKANPEYALATLKAAAEAGAD 173 (524)
T ss_pred CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-eEEEccccccccccCCHHHHHHHHHHHHhCCCC
Confidence 899999998877432222333221 127788888889999998 666544311 11 3456677888888888875
No 192
>PLN02321 2-isopropylmalate synthase
Probab=94.21 E-value=6.4 Score=41.05 Aligned_cols=142 Identities=15% Similarity=0.066 Sum_probs=81.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhc--CCCc---e-EEEEecCcchhhhHHHHHHc-
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLK---T-LAMTTNGLTLARKLPKLKES- 185 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~--~g~~---~-~~i~TNG~ll~~~~~~l~~~- 185 (400)
....|+.++-.++++.+.+.|++.|-. |=|..+++=.+.++.+.+. .++. . ..|..-+....+.++..+++
T Consensus 101 ~g~~~s~eeKl~Ia~~L~~lGVd~IEv--GfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al 178 (632)
T PLN02321 101 PGATLTSKEKLDIARQLAKLGVDIIEA--GFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAV 178 (632)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEE--eCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHh
Confidence 456699999999999999999998877 6777776533446666542 1110 0 12222222223444444443
Q ss_pred ---CCCeEEEecCCCCHHHHHHhhcCC--CHHHHHHHHHHHHHcCCCcEEEEEE-EecCCChhHHHHHHHHHHhCCCe
Q 015808 186 ---GLTSVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 186 ---g~~~i~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~v~i~~~-v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
....|.+.+-..+-.....++... .++.+.+.++.+++.|...+.+.+- ..+ .+.+.+.++++.+.+.|++
T Consensus 179 ~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~r-td~d~l~~~~~~a~~aGa~ 255 (632)
T PLN02321 179 KHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGR-SDPEFLYRILGEVIKAGAT 255 (632)
T ss_pred cCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCC-CCHHHHHHHHHHHHHcCCC
Confidence 223577776553222222332211 1677777888888887622444332 122 3556788888888887764
No 193
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=93.91 E-value=4.6 Score=40.87 Aligned_cols=142 Identities=16% Similarity=0.103 Sum_probs=88.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCC---Cc----eEEEEecCcchhhhHHHHHHc
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG---LK----TLAMTTNGLTLARKLPKLKES 185 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g---~~----~~~i~TNG~ll~~~~~~l~~~ 185 (400)
....++.++-.++++.+.+.|+..|-. |-|-..++-.+.++.+.+..+ .. ...+.+=+....+.++...+.
T Consensus 99 ~gv~fs~eeKi~Ia~~L~~~GVd~IEv--G~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a 176 (503)
T PLN03228 99 PGGSLTPPQKLEIARQLAKLRVDIMEV--GFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEA 176 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHh
Confidence 456799999999999999999987776 458888776666777764311 00 122322222223344444444
Q ss_pred ----CCCeEEEecCCCCHHHHHHhhcCC--CHHHHHHHHHHHHHcCCCc-EEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 186 ----GLTSVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNP-VKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 186 ----g~~~i~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~-v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
+.+.|.+.+-..+-.....++... ..+.+.+.++.+++.|. . +.+.+--..-.+.+.+.++++.+.+.|++
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~-~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad 254 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGF-HDIQFGCEDGGRSDKEFLCKILGEAIKAGAT 254 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-ceEEeccccccccCHHHHHHHHHHHHhcCCC
Confidence 667788887774322223333221 17888889999999987 4 44443221113445678888888888875
No 194
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.80 E-value=4.1 Score=41.15 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=88.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCCcc------chhhHHHHHHHhhhc-CCCceEEEEecCcch-----------
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKL-KGLKTLAMTTNGLTL----------- 175 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl------l~~~l~~~i~~~~~~-~g~~~~~i~TNG~ll----------- 175 (400)
...|+.++...+++.+.+.|+..|-..||--+ ++.+=.+.++.+++. ++. .+.+...|..+
T Consensus 21 atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt-~lqmL~Rg~N~vGy~~y~ddvv 99 (499)
T PRK12330 21 ATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNS-RLQMLLRGQNLLGYRHYEDEVV 99 (499)
T ss_pred CccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCC-eEEEEEcccccCCccCcchhHH
Confidence 35689999999999999999999999887632 333323444444432 233 56666665522
Q ss_pred hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcE--EEEEEEecCCChhHHHHHHHHHHh
Q 015808 176 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPV--KVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 176 ~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v--~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
...++...+.|++.+.|...- ++ .+.....++.+++.|. .+ .|.+++.+-.+.+.+.++++.+.+
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~l-nd-----------v~nl~~ai~~vk~ag~-~~~~~i~yt~sp~~t~e~~~~~a~~l~~ 166 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDAL-ND-----------PRNLEHAMKAVKKVGK-HAQGTICYTVSPIHTVEGFVEQAKRLLD 166 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecC-Ch-----------HHHHHHHHHHHHHhCC-eEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 234556677899988887443 22 2566667777888887 55 344455665677888888888888
Q ss_pred CCCeE
Q 015808 254 RPINI 258 (400)
Q Consensus 254 ~gv~~ 258 (400)
.|++.
T Consensus 167 ~Gad~ 171 (499)
T PRK12330 167 MGADS 171 (499)
T ss_pred cCCCE
Confidence 88753
No 195
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=92.69 E-value=5 Score=39.57 Aligned_cols=168 Identities=17% Similarity=0.190 Sum_probs=105.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCc----chhhhHHHHHHcCC
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL----TLARKLPKLKESGL 187 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~----ll~~~~~~l~~~g~ 187 (400)
.....++.++-.++++.+.++|++.|- .|-|-.++.-.+.++.+....++ .+.+.-. ...+.++.+++.+.
T Consensus 16 ~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE--~g~p~~s~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~ea~~~a~~ 90 (409)
T COG0119 16 APGVSFSVEEKIRIAKALDDLGVDYIE--AGFPVASPGDFEFVRAIAEKAGL---FICALIAALARAIKRDIEALLEAGV 90 (409)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCCEEE--EeCCcCChhhHHHHHHHHHhcCc---ccchhhhhhHHhHHhhHHHHHhCCC
Confidence 346679999999999999999977664 46777777766677766632232 2222221 22457788999999
Q ss_pred CeEEEecCCCCHHHHHHhhcC--CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEEeeec
Q 015808 188 TSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMP 265 (400)
Q Consensus 188 ~~i~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p 265 (400)
+.|.+-+.+.+-.....++.. ..++.+.+.++.+++.|+ .+.....-....+.+.+.++++.+.+.|... +.+-.
T Consensus 91 ~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~-~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~--i~l~D 167 (409)
T COG0119 91 DRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGL-EVRFSAEDATRTDPEFLAEVVKAAIEAGADR--INLPD 167 (409)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEeeccccCCHHHHHHHHHHHHHcCCcE--EEECC
Confidence 999999888532222233211 118889999999999997 6654332222257778888888888766542 22222
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHhCC
Q 015808 266 FDGNVWNVKKLVPYAEMLDTVVKKFP 291 (400)
Q Consensus 266 ~~~~~~~~~~~~~~~e~~~~i~~~~~ 291 (400)
..|. ..+..+.++++.+.+..+
T Consensus 168 TvG~----~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 168 TVGV----ATPNEVADIIEALKANVP 189 (409)
T ss_pred CcCc----cCHHHHHHHHHHHHHhCC
Confidence 1111 122335566677766654
No 196
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=92.59 E-value=7.7 Score=35.04 Aligned_cols=134 Identities=14% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccchhh--HHHHHHHhhhcCCCceEEEEecCcchh---------hhHHHHHHc
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTLA---------RKLPKLKES 185 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~--l~~~i~~~~~~~g~~~~~i~TNG~ll~---------~~~~~l~~~ 185 (400)
+++..+..+++.+.++ +..+.|.||--.+.|+ +.+.++.+++. ++ .+.|-|++++ +.++...+.
T Consensus 9 l~~~~~~d~Le~~g~y-ID~lKfg~Gt~~l~~~~~l~eki~la~~~-~V---~v~~GGtl~E~~~~q~~~~~Yl~~~k~l 83 (237)
T TIGR03849 9 LPPKFVEDYLKVCGDY-ITFVKFGWGTSALIDRDIVKEKIEMYKDY-GI---KVYPGGTLFEIAHSKGKFDEYLNECDEL 83 (237)
T ss_pred CCHHHHHHHHHHhhhh-eeeEEecCceEeeccHHHHHHHHHHHHHc-CC---eEeCCccHHHHHHHhhhHHHHHHHHHHc
Confidence 5788888888766554 6789999999999986 78999998885 55 5677787652 344577888
Q ss_pred CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecC-----CChhHHHHHHHHHHhCCCeEEE
Q 015808 186 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRG-----FNDDEICDFVELTRDRPINIRF 260 (400)
Q Consensus 186 g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~-----~n~~el~~l~~~~~~~gv~~~~ 260 (400)
|++.|-||--+.+ -+.+...+.|+.+.+.|+ .+...+-.-.. ...+++.+.++...+.|.....
T Consensus 84 Gf~~IEiS~G~~~----------i~~~~~~rlI~~~~~~g~-~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~Vi 152 (237)
T TIGR03849 84 GFEAVEISDGSME----------ISLEERCNLIERAKDNGF-MVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVI 152 (237)
T ss_pred CCCEEEEcCCccC----------CCHHHHHHHHHHHHhCCC-eEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEE
Confidence 9999999944432 125777888899999888 44333211100 1223444455555677887666
Q ss_pred EeeecC
Q 015808 261 IEFMPF 266 (400)
Q Consensus 261 ~~~~p~ 266 (400)
++-.-.
T Consensus 153 iEarEs 158 (237)
T TIGR03849 153 IEGRES 158 (237)
T ss_pred Eeehhc
Confidence 655433
No 197
>PRK15452 putative protease; Provisional
Probab=91.67 E-value=4.8 Score=40.13 Aligned_cols=134 Identities=11% Similarity=0.082 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECC--------CccchhhHHHHHHHhhhcCCCceEEEEecCcchhhh-------HHHH
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGG--------EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK-------LPKL 182 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GG--------EPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~-------~~~l 182 (400)
+++.++..+ +.|.+.|.+.|. .++-..++.+.++++++. |. .+.+++|....+++ +..+
T Consensus 12 ~~e~l~aAi----~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~-g~-kvyvt~n~i~~e~el~~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAF----AYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHAL-GK-KFYVVVNIAPHNAKLKTFIRDLEPV 85 (443)
T ss_pred CHHHHHHHH----HCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHc-CC-EEEEEecCcCCHHHHHHHHHHHHHH
Confidence 455555444 578888888442 234445688899998885 87 79999997654433 4555
Q ss_pred HHcCCCeEEEecCCCCHHHHHHhhcCC-C------H---HHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHH
Q 015808 183 KESGLTSVNISLDTLVPAKFEFLTRRK-G------H---EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 252 (400)
Q Consensus 183 ~~~g~~~i~iSldg~~~~~~~~ir~~~-~------~---~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~ 252 (400)
.+.|++.|.|+ ++.....++... . + -.-..+++.+.+.|+ -++|+.+..|.+||.++.+-..
T Consensus 86 ~~~gvDgvIV~----d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~----~rvvLSrELsl~EI~~i~~~~~ 157 (443)
T PRK15452 86 IAMKPDALIMS----DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGL----TRVILSRELSLEEIEEIRQQCP 157 (443)
T ss_pred HhCCCCEEEEc----CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCC----cEEEECCcCCHHHHHHHHhhCC
Confidence 67788988888 344444333211 1 1 112456677788888 3667778788899998865433
Q ss_pred hCCCeEEEEeeec
Q 015808 253 DRPINIRFIEFMP 265 (400)
Q Consensus 253 ~~gv~~~~~~~~p 265 (400)
...+.+...-.++
T Consensus 158 ~~elEvfVHGalc 170 (443)
T PRK15452 158 DMELEVFVHGALC 170 (443)
T ss_pred CCCEEEEEEccch
Confidence 3333443333333
No 198
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=91.49 E-value=13 Score=37.77 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=83.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhc-CCCceEEEEecCcchhhhHH----HHHHcCC
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLTLARKLP----KLKESGL 187 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~-~g~~~~~i~TNG~ll~~~~~----~l~~~g~ 187 (400)
....++.++-.++++.+.+.|++.|-. |=|-..+.=.+.++.+.+. .+. .+...+-+ ..+.++ .+...+.
T Consensus 16 ~g~~~s~e~K~~ia~~L~~~GV~~IEv--G~p~~s~~d~e~v~~i~~~~~~~-~i~al~r~--~~~did~a~~al~~~~~ 90 (494)
T TIGR00973 16 PGASLTVEEKLQIALALERLGVDIIEA--GFPVSSPGDFEAVQRIARTVKNP-RVCGLARC--VEKDIDAAAEALKPAEK 90 (494)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEE--ECCCCCHHHHHHHHHHHHhCCCC-EEEEEcCC--CHHhHHHHHHhccccCC
Confidence 455699999999999999999998864 4555544323444555432 122 33322221 233333 3334466
Q ss_pred CeEEEecCCCCHHHHHHhhcCCC--HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 188 TSVNISLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 188 ~~i~iSldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
..|.+.+-+.+......++.... .+.+.+.++.+++.|. .+.+..--.-..+.+.+.++++.+.+.|++
T Consensus 91 ~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~-~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~ 161 (494)
T TIGR00973 91 FRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTD-DVEFSCEDAGRTEIPFLARIVEAAINAGAT 161 (494)
T ss_pred CEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEcCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 77888887743222233332111 6777788888888887 655554321113567788888888888775
No 199
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=91.16 E-value=13 Score=34.67 Aligned_cols=133 Identities=18% Similarity=0.215 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHhCC-----CCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEE
Q 015808 117 LSLNEILRLAYLFVTSG-----VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g-----~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~ 191 (400)
++.++=.++++.+.+.| ++.|-+ + ++.+.+...+.+.+.. +.....+........+.++..++.|++.|.
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~-~--s~~~~d~~~v~~~~~~--~~~~~~v~~~~r~~~~die~A~~~g~~~v~ 92 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEF-F--LYTEKDREAVEACLDR--GYKFPEVTGWIRANKEDLKLVKEMGLKETG 92 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEe-c--CcChHHHHHHHHHHHc--CCCCCEEEEEecCCHHHHHHHHHcCcCEEE
Confidence 49999999999999999 999998 2 4556666666555543 221112333333345678888889999999
Q ss_pred EecCCCCHHHH-HHhhcCC--CHHHHHHHHHHHHHcCCCcEEEEEE-EecCCCh-----hHHHHHHHHHHhCCCe
Q 015808 192 ISLDTLVPAKF-EFLTRRK--GHEKVMESINAAIEVGYNPVKVNCV-VMRGFND-----DEICDFVELTRDRPIN 257 (400)
Q Consensus 192 iSldg~~~~~~-~~ir~~~--~~~~v~~~i~~l~~~g~~~v~i~~~-v~~~~n~-----~el~~l~~~~~~~gv~ 257 (400)
+.+-.. +.+. ..++... .++++.+.++.+++.|. .+.+..- ..+ .+. +-+.++++.+.+.|++
T Consensus 93 i~~s~S-~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~-~v~~~~ed~~r-~d~~~~v~~~~~~~~~~~~~~G~~ 164 (279)
T cd07947 93 ILMSVS-DYHIFKKLKMTREEAMEKYLEIVEEALDHGI-KPRCHLEDITR-ADIYGFVLPFVNKLMKLSKESGIP 164 (279)
T ss_pred EEEcCC-HHHHHHHhCcCHHHHHHHHHHHHHHHHHCCC-eEEEEEEcccC-CCcccchHHHHHHHHHHHHHCCCC
Confidence 988663 3332 2333211 27778888888888887 5544441 111 111 2356666666667875
No 200
>PRK15447 putative protease; Provisional
Probab=90.51 E-value=8.1 Score=36.44 Aligned_cols=126 Identities=15% Similarity=0.095 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCC-----ccchhhHHHHHHHhhhcCCCceEEEEecCcch-hhh---HHHHHHcC
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLTGGE-----PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARK---LPKLKESG 186 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~GGE-----Pll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll-~~~---~~~l~~~g 186 (400)
.++......+...+.+.|.+.|.+.+.. ++...++.++++.+++. |. .+.+.||..+. +++ +..+++.+
T Consensus 11 ~~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~-gk-kvyva~p~i~~~~~e~~~l~~~l~~~ 88 (301)
T PRK15447 11 YWPKETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAA-GK-EVVLSTLALVEAPSELKELRRLVENG 88 (301)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHc-CC-EEEEEecccccCHHHHHHHHHHHhcC
Confidence 3455556666666678888888876421 35557799999999885 87 79999998754 433 45555666
Q ss_pred CCeEEEecCCCCHHHHHHhh--cCC---CH---HHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHH
Q 015808 187 LTSVNISLDTLVPAKFEFLT--RRK---GH---EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 251 (400)
Q Consensus 187 ~~~i~iSldg~~~~~~~~ir--~~~---~~---~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~ 251 (400)
.+.|.++ +......++ +.. ++ ----.+++.+.+.|. -++|+.+..|.+||.++.+..
T Consensus 89 ~~~v~v~----d~g~l~~~~e~~~~l~~d~~lni~N~~a~~~l~~~G~----~rv~ls~ELsl~eI~~i~~~~ 153 (301)
T PRK15447 89 EFLVEAN----DLGAVRLLAERGLPFVAGPALNCYNAATLALLARLGA----TRWCMPVELSRDWLANLLAQC 153 (301)
T ss_pred CCEEEEe----CHHHHHHHHhcCCCEEEecccccCCHHHHHHHHHcCC----cEEEECCcCCHHHHHHHHHhc
Confidence 5555543 333333333 111 11 111345666777777 466777778888888886654
No 201
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=90.34 E-value=19 Score=36.14 Aligned_cols=131 Identities=16% Similarity=0.146 Sum_probs=85.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCCccc------hhhHHHHHHHhhhc-CCCceEEEEecCcc---h---hhh--
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV------RKDIEEACFHLSKL-KGLKTLAMTTNGLT---L---ARK-- 178 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll------~~~l~~~i~~~~~~-~g~~~~~i~TNG~l---l---~~~-- 178 (400)
...|+.+++..++..+.+.|+..|-+.||--+- +.+=.+.++.+++. ++. .+.+..-|.. . ++.
T Consensus 29 atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt-~lqmLlRG~n~vgy~~ypddvv 107 (468)
T PRK12581 29 ATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNT-RLQMLLRGQNLLGYRHYADDIV 107 (468)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCC-ceeeeeccccccCccCCcchHH
Confidence 345899999999999999999999999986433 22212333333321 233 4444444532 1 223
Q ss_pred ---HHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcE--EEEEEEecCCChhHHHHHHHHHHh
Q 015808 179 ---LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPV--KVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 179 ---~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v--~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
++...+.|++.+.|. |..+ ..+.+...++.+++.|. .+ .+.++..+.++.+.+.++++.+.+
T Consensus 108 ~~fv~~a~~~Gidi~Rif-d~ln-----------d~~n~~~ai~~ak~~G~-~~~~~i~yt~sp~~t~~y~~~~a~~l~~ 174 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIF-DALN-----------DPRNIQQALRAVKKTGK-EAQLCIAYTTSPVHTLNYYLSLVKELVE 174 (468)
T ss_pred HHHHHHHHHCCCCEEEEc-ccCC-----------CHHHHHHHHHHHHHcCC-EEEEEEEEEeCCcCcHHHHHHHHHHHHH
Confidence 455567888776664 4432 35788889999999998 64 445555665567778888888888
Q ss_pred CCCeE
Q 015808 254 RPINI 258 (400)
Q Consensus 254 ~gv~~ 258 (400)
.|++.
T Consensus 175 ~Gad~ 179 (468)
T PRK12581 175 MGADS 179 (468)
T ss_pred cCCCE
Confidence 88763
No 202
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=89.39 E-value=19 Score=33.72 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=84.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCC--ceEEEEecCcchhhhHHHHHHc--CC
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL--KTLAMTTNGLTLARKLPKLKES--GL 187 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~--~~~~i~TNG~ll~~~~~~l~~~--g~ 187 (400)
.....++.++=.++++.+.+.|++.|-+. =|-+.+.-.++++.+.+. +. ..+.+..=.......++.-++. ++
T Consensus 15 ~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~g--fP~~~~~e~e~~~~i~~~-~~~~~~~~~~al~r~~~~die~a~~~~~~~ 91 (284)
T cd07942 15 ALAEPMSVEQKLRFFKLLVKIGFKEIEVG--FPSASQTDFDFVRELIEE-DLIPDDVTIQVLTQAREDLIERTFEALRGA 91 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCCHHHHHHHHHHHHc-cCCCCCCEEEEEcCCChhhHHHHHHHhCCC
Confidence 34567999999999999999999988775 498887777888888543 21 1122322222223446555554 55
Q ss_pred C--eEEEecCCCCHHHHHHhhcCC--CHHHHHHHHHHHHHcCCCc--EEEEEEEec----CCChhHHHHHHHHHHhC
Q 015808 188 T--SVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNP--VKVNCVVMR----GFNDDEICDFVELTRDR 254 (400)
Q Consensus 188 ~--~i~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~--v~i~~~v~~----~~n~~el~~l~~~~~~~ 254 (400)
+ .|.+.+-..+......++... ..+.+.+.++.+++.|... ..+.+.+.. ..+.+.+.++++.+.+.
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~ 168 (284)
T cd07942 92 KKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDV 168 (284)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHh
Confidence 4 587877773222222333211 1667777788888877521 123343332 13456688888887665
No 203
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=88.45 E-value=4.6 Score=36.69 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccchhh--HHHHHHHhhhcCCCceEEEEecCcch---------hhhHHHHHHc
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTL---------ARKLPKLKES 185 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~--l~~~i~~~~~~~g~~~~~i~TNG~ll---------~~~~~~l~~~ 185 (400)
+.+..+..+++.+.++ +..+.|.+|-..+.|. +.+.++.+++. |+ .+.|-|+++ ++.++...+.
T Consensus 22 lg~~~~~dlLe~ag~y-ID~~K~g~Gt~~l~~~~~l~eki~l~~~~-gV---~v~~GGtl~E~a~~q~~~~~yl~~~k~l 96 (244)
T PF02679_consen 22 LGLRYLEDLLESAGDY-IDFLKFGWGTSALYPEEILKEKIDLAHSH-GV---YVYPGGTLFEVAYQQGKFDEYLEECKEL 96 (244)
T ss_dssp --HHHHHHHHHHHGGG--SEEEE-TTGGGGSTCHHHHHHHHHHHCT-T----EEEE-HHHHHHHHHTT-HHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhhhh-ccEEEecCceeeecCHHHHHHHHHHHHHc-CC---eEeCCcHHHHHHHhcChHHHHHHHHHHc
Confidence 7888888888876554 7899999999999988 89999999986 55 677888875 3455777789
Q ss_pred CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCh--------hHHHHHHHHHHhCCCe
Q 015808 186 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--------DEICDFVELTRDRPIN 257 (400)
Q Consensus 186 g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~--------~el~~l~~~~~~~gv~ 257 (400)
|++.|-||--+. +- +.+.-.+.|+.+++.|+ .|.. -+.+ .+. +++.+.++...+.|..
T Consensus 97 Gf~~IEiSdGti-~l---------~~~~r~~~I~~~~~~Gf-~v~~--EvG~-K~~~~~~~~~~~~~i~~~~~dLeAGA~ 162 (244)
T PF02679_consen 97 GFDAIEISDGTI-DL---------PEEERLRLIRKAKEEGF-KVLS--EVGK-KDPESDFSLDPEELIEQAKRDLEAGAD 162 (244)
T ss_dssp T-SEEEE--SSS-------------HHHHHHHHHHHCCTTS-EEEE--EES--SSHHHHTT--CCHHHHHHHHHHHHTEC
T ss_pred CCCEEEecCCce-eC---------CHHHHHHHHHHHHHCCC-EEee--cccC-CCchhcccCCHHHHHHHHHHHHHCCCC
Confidence 999999994433 11 24666778899999988 4433 3332 122 2344444444456776
Q ss_pred EEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 015808 258 IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 291 (400)
Q Consensus 258 ~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 291 (400)
...++-.-.+........-.-..++++.+.+.++
T Consensus 163 ~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~ 196 (244)
T PF02679_consen 163 KVIIEARESGKGGIYDNDGEVRTDLVEKIIERLG 196 (244)
T ss_dssp EEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-
T ss_pred EEEEeeeccCCCCccCCCCCccHHHHHHHHHhCC
Confidence 5555544333222222222223456666665553
No 204
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=87.79 E-value=20 Score=32.24 Aligned_cols=116 Identities=5% Similarity=-0.032 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE--ECCCccchhhH-HHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEe
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRL--TGGEPTVRKDI-EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 193 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~--~GGEPll~~~l-~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iS 193 (400)
.++-.+.+.++.+.+.|+..+.+ .-|.-.=+--| .++++.+++...+ .+++=++ ...+.++.+.++|.+.|.|.
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~~~~~-DvHLMv~--~P~~~i~~~~~aGad~It~H 98 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPTHCFK-DVHLMVR--DQFEVAKACVAAGADIVTLQ 98 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCCCCCE-EEEeccC--CHHHHHHHHHHhCCCEEEEc
Confidence 44567778888888888776555 45663222222 3445555432122 3443222 13456789999999999999
Q ss_pred cCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHH
Q 015808 194 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 250 (400)
Q Consensus 194 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~ 250 (400)
.++. ....+.|+.+++.|. .+....++.|+...+.++.+++.
T Consensus 99 ~Ea~--------------~~~~~~l~~Ik~~g~-~~kaGlalnP~Tp~~~i~~~l~~ 140 (228)
T PRK08091 99 VEQT--------------HDLALTIEWLAKQKT-TVLIGLCLCPETPISLLEPYLDQ 140 (228)
T ss_pred ccCc--------------ccHHHHHHHHHHCCC-CceEEEEECCCCCHHHHHHHHhh
Confidence 9873 124566788888888 77888899887555666666553
No 205
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=87.12 E-value=9.8 Score=35.33 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEE-----CCCccchhh-HHHHHHHhhhc-CCCceEEEEecCcch---hhhHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLT-----GGEPTVRKD-IEEACFHLSKL-KGLKTLAMTTNGLTL---ARKLPKLK 183 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~-----GGEPll~~~-l~~~i~~~~~~-~g~~~~~i~TNG~ll---~~~~~~l~ 183 (400)
.-.++++++.+-.....+.|...|.++ .|.|.+.++ +.++++.+++. .++ -+.++|-+... .+.+..+.
T Consensus 20 ~lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~-iv~~Ttg~~~~~~~~~R~~~v~ 98 (272)
T PF05853_consen 20 ALPITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDL-IVQPTTGGGGGPDPEERLAHVE 98 (272)
T ss_dssp TS--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTS-EEEEESSTTTTSGHHHHCTHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCe-EEEeCCCCCCCCCHHHHHHHHH
Confidence 456889999999888888887777775 388999988 68999999987 677 68888876332 23333333
Q ss_pred HcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCC
Q 015808 184 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI 256 (400)
Q Consensus 184 ~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv 256 (400)
....+...+.+-..+-...+ .--..+++.+.+.++.+++.|+ .+.+. + ++...+..+..+..+ |+
T Consensus 99 ~~~pd~asl~~gs~n~~~~~-~~~~n~~~~~~~~~~~~~e~Gi-~pe~e--v---~d~~~l~~~~~l~~~-G~ 163 (272)
T PF05853_consen 99 AWKPDMASLNPGSMNFGTRD-RVYINTPADARELARRMRERGI-KPEIE--V---FDPGHLRNARRLIEK-GL 163 (272)
T ss_dssp HH--SEEEEE-S-EEESGGC-SEE---HHHHHHHHHHHHHTT--EEEEE--E---SSHHHHHHHHHHHHT-TS
T ss_pred hcCCCeEEecccccccccCC-ceecCCHHHHHHHHHHHHHcCC-eEEEE--E---EcHHHHHHHHHHHHC-CC
Confidence 32456666655443211001 1112348889999999999998 44433 3 466677777666554 55
No 206
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=11 Score=36.21 Aligned_cols=97 Identities=24% Similarity=0.229 Sum_probs=61.2
Q ss_pred cchhhHHHHHHHhhhcCCCceEEEEecCcchh-------hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCC-------C
Q 015808 145 TVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-------RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRK-------G 210 (400)
Q Consensus 145 ll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~-------~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~-------~ 210 (400)
+-..++.+.++++.+. |. .+.+++|..+.+ +.++.|.+.|++.|.++ |+-....++... +
T Consensus 46 fs~~~l~e~i~~ah~~-gk-k~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~----Dpg~i~l~~e~~p~l~ih~S 119 (347)
T COG0826 46 FSVEDLAEAVELAHSA-GK-KVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVA----DPGLIMLARERGPDLPIHVS 119 (347)
T ss_pred CCHHHHHHHHHHHHHc-CC-eEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEc----CHHHHHHHHHhCCCCcEEEe
Confidence 3446689999999986 77 688888887653 34577888999999988 454444333211 0
Q ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHH
Q 015808 211 ---HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 251 (400)
Q Consensus 211 ---~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~ 251 (400)
.-.-.+.++.+.+.|. .++++.+..+.+++.++.+-+
T Consensus 120 ~q~~v~N~~~~~f~~~~G~----~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 120 TQANVTNAETAKFWKELGA----KRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred eeEecCCHHHHHHHHHcCC----EEEEeCccCCHHHHHHHHHhC
Confidence 2233445566666665 345555555566666666544
No 207
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=85.06 E-value=31 Score=31.70 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=78.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCcc---c---hh--h---HHHHHHHhhhcCCCceEEEEecCcchhhhHH
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT---V---RK--D---IEEACFHLSKLKGLKTLAMTTNGLTLARKLP 180 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl---l---~~--~---l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~ 180 (400)
......+.+++.+.+.++.+.|..-|.+ ||+.+ . .+ + +..+++.+++..++ .+++.|-- .+.++
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~iIDI-G~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~---~~vi~ 89 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGADIIDV-GGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYR---AEVAR 89 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCC---HHHHH
Confidence 4556688999999999999999888888 55433 2 22 2 56777777764466 68888754 34456
Q ss_pred HHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCC--------C-h----hHHHH
Q 015808 181 KLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGF--------N-D----DEICD 246 (400)
Q Consensus 181 ~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v-~~~~--------n-~----~el~~ 246 (400)
.-++.|.+ +.=|+.+.. .+ +.++.+.+.|. ++.+...- .+.. + . +.+.+
T Consensus 90 ~al~~G~~-iINsis~~~------------~~---~~~~l~~~~~~-~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 152 (257)
T TIGR01496 90 AALEAGAD-IINDVSGGQ------------DP---AMLEVAAEYGV-PLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEA 152 (257)
T ss_pred HHHHcCCC-EEEECCCCC------------Cc---hhHHHHHHcCC-cEEEEeCCCCCcccccCCCcccHHHHHHHHHHH
Confidence 66666875 455666641 01 22233556666 55444432 1110 1 1 23556
Q ss_pred HHHHHHhCCCeEEEEeeec
Q 015808 247 FVELTRDRPINIRFIEFMP 265 (400)
Q Consensus 247 l~~~~~~~gv~~~~~~~~p 265 (400)
.++.+.+.|++..-+-+-|
T Consensus 153 ~i~~~~~~Gi~~~~iilDP 171 (257)
T TIGR01496 153 RAEELVAAGVAAERIILDP 171 (257)
T ss_pred HHHHHHHcCCCHHHEEEEC
Confidence 6667777888644455555
No 208
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=84.70 E-value=6.1 Score=36.80 Aligned_cols=108 Identities=13% Similarity=0.153 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchhh-HHHHHHHhhhcCCCceEEEEecCcchh-hhHHHHHHcCCCe
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLKESGLTS 189 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~~g~~~~~i~TNG~ll~-~~~~~l~~~g~~~ 189 (400)
..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+..+-..+.+.++.+.-. +..+...+.|.+.
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Gad~ 94 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGIYA 94 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCCCE
Confidence 569999999999999999999999988 99 666543 555555554432211233333332222 3346666788888
Q ss_pred EEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEE
Q 015808 190 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN 232 (400)
Q Consensus 190 i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~ 232 (400)
+.+-.-.+.. ..+-+.+.+-.+.+.+ ++ ++.+.
T Consensus 95 v~v~~P~y~~--------~~~~~~i~~yf~~v~~-~l-pv~iY 127 (279)
T cd00953 95 IASLPPYYFP--------GIPEEWLIKYFTDISS-PY-PTFIY 127 (279)
T ss_pred EEEeCCcCCC--------CCCHHHHHHHHHHHHh-cC-CEEEE
Confidence 7765332110 0122444455555555 66 66554
No 209
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=84.53 E-value=5.6 Score=37.67 Aligned_cols=107 Identities=17% Similarity=0.251 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchhh-HHHHHHHhhhc-CC-CceEEEEecCcchh---hhHHHHHHc
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL-KG-LKTLAMTTNGLTLA---RKLPKLKES 185 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~-~g-~~~~~i~TNG~ll~---~~~~~l~~~ 185 (400)
..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. .+ + .+.+.+.+.... +.++...+.
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grv-pvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRV-PVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCC-CEEEEeccCCHHHHHHHHHHHHHh
Confidence 469999999999999999999999988 99 555433 45555544332 12 3 344444332233 334556677
Q ss_pred CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEE
Q 015808 186 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVN 232 (400)
Q Consensus 186 g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~ 232 (400)
|.+.+.+..-...+ .+-+.+++-.+.+.+. ++ ++.+.
T Consensus 103 Gad~vlv~~P~y~~---------~~~~~l~~yf~~va~a~~~l-Pv~iY 141 (309)
T cd00952 103 GADGTMLGRPMWLP---------LDVDTAVQFYRDVAEAVPEM-AIAIY 141 (309)
T ss_pred CCCEEEECCCcCCC---------CCHHHHHHHHHHHHHhCCCC-cEEEE
Confidence 99988887432111 1235666666666554 35 66554
No 210
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=84.14 E-value=38 Score=32.20 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEE--CC---------Cccchhh-HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHH
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLT--GG---------EPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKE 184 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~--GG---------EPll~~~-l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~ 184 (400)
-+.+++.+.++++.+.|...|.++ |+ .+.+.++ +..+++.+++. |+ .+.+..++. ..+...++
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~-g~-~v~~H~~~~---~~i~~~l~ 191 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA-GL-YVAAHAYGA---EAIRRAIR 191 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc-CC-EEEEEeCCH---HHHHHHHH
Confidence 458889999998888898777665 32 1245444 67888888875 77 677777652 33455556
Q ss_pred cCCCeE
Q 015808 185 SGLTSV 190 (400)
Q Consensus 185 ~g~~~i 190 (400)
.|.+.|
T Consensus 192 ~G~~~i 197 (342)
T cd01299 192 AGVDTI 197 (342)
T ss_pred cCCCEE
Confidence 666544
No 211
>PRK14847 hypothetical protein; Provisional
Probab=83.32 E-value=44 Score=32.00 Aligned_cols=139 Identities=9% Similarity=-0.013 Sum_probs=79.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCC-ceEEEEecCcchhhhHHHHHHc----CC
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL-KTLAMTTNGLTLARKLPKLKES----GL 187 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~-~~~~i~TNG~ll~~~~~~l~~~----g~ 187 (400)
..-.++.++=.++.+.+.+.|++.|-. |=|-...+-.+.++.+.+...+ ..+.|.+=.....+.++.-.++ +.
T Consensus 47 pGv~fs~eeKl~IA~~L~~lGVd~IEv--G~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~ 124 (333)
T PRK14847 47 LIEPMDGARKLRLFEQLVAVGLKEIEV--AFPSASQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPR 124 (333)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEe--eCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCC
Confidence 456699999999999999999887754 5677777666777777654211 1233443333333444433333 44
Q ss_pred CeEEEecCCCCHHHHHHhhcCCC--HHHHHHHHHHHHHcCCC----cEEEEEEEecC--CChhHHHHHHHHHHh
Q 015808 188 TSVNISLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYN----PVKVNCVVMRG--FNDDEICDFVELTRD 253 (400)
Q Consensus 188 ~~i~iSldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~----~v~i~~~v~~~--~n~~el~~l~~~~~~ 253 (400)
..|.+++-+.+-....+++.... .+.+.+.++.+++.|.. .+.+.+..... -+.+.+.++++.+.+
T Consensus 125 ~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~ 198 (333)
T PRK14847 125 AIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSA 198 (333)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHH
Confidence 56999988843222223332111 56677778888888431 13455544321 133456666665533
No 212
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=83.18 E-value=14 Score=35.91 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEecCcc-hhh-hHHHHHHcCCCeEEE
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLT-LAR-KLPKLKESGLTSVNI 192 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~TNG~l-l~~-~~~~l~~~g~~~i~i 192 (400)
.-+.+.+.++++++.+.|+.+|+|----=+|.|. ..++|+.+++..++ .+.+.|..|. +.. ....-.++|++.|..
T Consensus 152 vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~-pv~lHtH~TsG~a~m~ylkAvEAGvD~iDT 230 (472)
T COG5016 152 VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPV-PVELHTHATSGMAEMTYLKAVEAGVDGIDT 230 (472)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCC-eeEEecccccchHHHHHHHHHHhCcchhhh
Confidence 3578999999999999999999997655577776 68999999988787 7888876653 322 235556788887766
Q ss_pred ecCCC
Q 015808 193 SLDTL 197 (400)
Q Consensus 193 Sldg~ 197 (400)
++...
T Consensus 231 Aisp~ 235 (472)
T COG5016 231 AISPL 235 (472)
T ss_pred hhccc
Confidence 65543
No 213
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=82.97 E-value=4.5 Score=36.13 Aligned_cols=57 Identities=30% Similarity=0.491 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecC
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNG 172 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG 172 (400)
....|++|++..++....+.|-..+.++.|+|.++--+.|=++.+.+. |+ .+.+ +-|
T Consensus 55 nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~EQm~~L~~~-gI-~yev-vPG 111 (254)
T COG2875 55 NSASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQMRELEAL-GI-PYEV-VPG 111 (254)
T ss_pred ecCcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHHHHHHHHHHHHc-CC-CeEE-eCC
Confidence 356699999999999999999899999999999999998888999885 88 5666 345
No 214
>PTZ00445 p36-lilke protein; Provisional
Probab=82.61 E-value=9.8 Score=33.71 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEE----------EC--CCcc---------chhhHHHHHHHhhhcCCCceEEEEe
Q 015808 119 LNEILRLAYLFVTSGVDKIRL----------TG--GEPT---------VRKDIEEACFHLSKLKGLKTLAMTT 170 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~~----------~G--GEPl---------l~~~l~~~i~~~~~~~g~~~~~i~T 170 (400)
.|.+..+++.+.+.|++.|.+ +| .+|. +.|+|..++..+.+. |+ .+.|.|
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~-~I-~v~VVT 98 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNS-NI-KISVVT 98 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHC-CC-eEEEEE
Confidence 455666788889999887665 35 5788 789999999999985 88 688877
No 215
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=82.58 E-value=65 Score=33.51 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCCcc------chhhHHHHHHHhhh-cCCCceEEEEecCcch------hh---
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSK-LKGLKTLAMTTNGLTL------AR--- 177 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl------l~~~l~~~i~~~~~-~~g~~~~~i~TNG~ll------~~--- 177 (400)
...|+.+++..++..+.+.|+..+-+.||--+ ++.+=.+.++.+++ .++. .+.+..-|..+ ++
T Consensus 20 atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt-~lqmL~Rg~N~vGy~~~~d~vv 98 (596)
T PRK14042 20 ATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNT-QLSMLLRGQNLLGYRNYADDVV 98 (596)
T ss_pred hcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCC-ceEEEeccccccccccCChHHH
Confidence 34589999999999999999999999998755 22221233333332 2333 45655544322 22
Q ss_pred --hHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEE--EEEecCCChhHHHHHHHHHHh
Q 015808 178 --KLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--CVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 178 --~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~~v~~~~n~~el~~l~~~~~~ 253 (400)
.++...+.|++.+.|- |+.+ ..+.....++.+++.|. .+... ++..+-++.+.+.++++.+.+
T Consensus 99 ~~~v~~a~~~Gidv~Rif-d~ln-----------d~~n~~~~i~~~k~~G~-~~~~~i~yt~sp~~t~e~~~~~ak~l~~ 165 (596)
T PRK14042 99 RAFVKLAVNNGVDVFRVF-DALN-----------DARNLKVAIDAIKSHKK-HAQGAICYTTSPVHTLDNFLELGKKLAE 165 (596)
T ss_pred HHHHHHHHHcCCCEEEEc-ccCc-----------chHHHHHHHHHHHHcCC-EEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 3355567888877664 4542 24677778999999998 66555 455555677888888888888
Q ss_pred CCCeE
Q 015808 254 RPINI 258 (400)
Q Consensus 254 ~gv~~ 258 (400)
.|++.
T Consensus 166 ~Gad~ 170 (596)
T PRK14042 166 MGCDS 170 (596)
T ss_pred cCCCE
Confidence 88763
No 216
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=82.50 E-value=12 Score=35.19 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchhh-HHHHHHHhhhcC--CCceEEEEecCcchhh---hHHHHHHc
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLK--GLKTLAMTTNGLTLAR---KLPKLKES 185 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~~--g~~~~~i~TNG~ll~~---~~~~l~~~ 185 (400)
..++.+.+.++++.+.+.|+..|.+.| || |+|..+ -.++++.+.+.- .+ .+..-|.+....+ ..+...+.
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grv-pviaG~g~~~t~eai~lak~a~~~ 98 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRV-PVIAGVGSNSTAEAIELAKHAEKL 98 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCC-cEEEecCCCcHHHHHHHHHHHHhc
Confidence 449999999999999999999999988 99 677544 445555554432 23 3444444443433 33556678
Q ss_pred CCCeEEEe
Q 015808 186 GLTSVNIS 193 (400)
Q Consensus 186 g~~~i~iS 193 (400)
|.+.+.+.
T Consensus 99 Gad~il~v 106 (299)
T COG0329 99 GADGILVV 106 (299)
T ss_pred CCCEEEEe
Confidence 88877765
No 217
>PLN02417 dihydrodipicolinate synthase
Probab=82.20 E-value=6.7 Score=36.58 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchhh-HHHHHHHhhhc-CC-CceEEEEecCcchh---hhHHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL-KG-LKTLAMTTNGLTLA---RKLPKLKE 184 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~-~g-~~~~~i~TNG~ll~---~~~~~l~~ 184 (400)
...++.+.+.+.++.+.+.|+..|.+.| || ++|..+ -.++++.+.+. .+ + .+...+.+.... +..+...+
T Consensus 16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~-pvi~gv~~~~t~~~i~~a~~a~~ 94 (280)
T PLN02417 16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKI-KVIGNTGSNSTREAIHATEQGFA 94 (280)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCC-cEEEECCCccHHHHHHHHHHHHH
Confidence 4569999999999999999999999988 99 566543 44555544332 12 3 444444443333 33455667
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG 225 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g 225 (400)
.|.+.+.+..-. |- ..+-+.+++..+.+.+..
T Consensus 95 ~Gadav~~~~P~-----y~----~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 95 VGMHAALHINPY-----YG----KTSQEGLIKHFETVLDMG 126 (280)
T ss_pred cCCCEEEEcCCc-----cC----CCCHHHHHHHHHHHHhhC
Confidence 888887775322 21 123466666666666654
No 218
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=82.15 E-value=6.8 Score=36.70 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchhh-HHHHHHHhhhc--CCCceEEEEecCcchh---hhHHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLKE 184 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~--~g~~~~~i~TNG~ll~---~~~~~l~~ 184 (400)
...++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+ .+...+.+.-.. +.++...+
T Consensus 16 dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~-~vi~gv~~~~~~~~i~~a~~a~~ 94 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRV-PVIAGTGSNSTAEAIELTKFAEK 94 (292)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCC-cEEeecCCchHHHHHHHHHHHHH
Confidence 4569999999999999999999999988 88 555543 34444433332 123 344444433333 34466677
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 232 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 232 (400)
.|.+.+.+..-.... .+-+.+++-.+.+.+. +. ++.+.
T Consensus 95 ~G~d~v~~~pP~~~~---------~~~~~i~~~~~~ia~~~~~-pv~lY 133 (292)
T PRK03170 95 AGADGALVVTPYYNK---------PTQEGLYQHFKAIAEATDL-PIILY 133 (292)
T ss_pred cCCCEEEECCCcCCC---------CCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 899988886433211 1235555555555543 45 65555
No 219
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.77 E-value=26 Score=30.84 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=56.6
Q ss_pred HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhh-cCCCHHHHHHHHHHHHHcCCCc
Q 015808 150 IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLT-RRKGHEKVMESINAAIEVGYNP 228 (400)
Q Consensus 150 l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir-~~~~~~~v~~~i~~l~~~g~~~ 228 (400)
+.+.|++..+..+. .+.+.|--..+ +.+..+...|-..+..||.. ++.-+..- +..+++.-+++++.+.++|+ +
T Consensus 12 l~~~I~ff~~~~~~-~lef~TK~~nv-~~Ll~l~~~~~t~~rfSlnp--~~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy-~ 86 (199)
T TIGR00620 12 LKRAIEHFGQSDFG-KLRFVTKFHHV-DHLLDAKHNGKTRFRFSINA--DYVIKNFEPGTSPLDKRIEAAVKVAKAGY-P 86 (199)
T ss_pred HHHHHHHHccCCCc-EEEEEEcccch-hhHhcCCCCCCEEEEEEeCH--HHHHHHhcCCCCCHHHHHHHHHHHHHcCC-e
Confidence 56788888876666 78888866443 22444444556688999887 44544443 45569999999999999999 8
Q ss_pred EEEEE
Q 015808 229 VKVNC 233 (400)
Q Consensus 229 v~i~~ 233 (400)
|.+.+
T Consensus 87 Vg~~~ 91 (199)
T TIGR00620 87 LGFII 91 (199)
T ss_pred EEEEe
Confidence 87775
No 220
>PRK12999 pyruvate carboxylase; Reviewed
Probab=80.75 E-value=96 Score=35.15 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=84.3
Q ss_pred CCCCCHHHHHHHHHHHHhC--CCCEEEEECCC------ccchhhHHHHHHHhhhc-CCCceEEEEecCcch---------
Q 015808 114 PQLLSLNEILRLAYLFVTS--GVDKIRLTGGE------PTVRKDIEEACFHLSKL-KGLKTLAMTTNGLTL--------- 175 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~--g~~~i~~~GGE------Pll~~~l~~~i~~~~~~-~g~~~~~i~TNG~ll--------- 175 (400)
...|+.++...++..+.+. |+..|-..||- ++++.+=.+.++.+++. ++. .+.+...|..+
T Consensus 549 atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~-~~q~l~Rg~n~vgy~~yp~~ 627 (1146)
T PRK12999 549 ATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNV-LFQMLLRGSNAVGYTNYPDN 627 (1146)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCC-eEEEEecccccccccCCCch
Confidence 4568999999999999999 99999999874 44544323344444432 233 45555544211
Q ss_pred --hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEe-------c-CCChhHHH
Q 015808 176 --ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-------R-GFNDDEIC 245 (400)
Q Consensus 176 --~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~-------~-~~n~~el~ 245 (400)
.+.++...+.|++.+.|. |+.++ .+.+...++.+++.|. ...+.+..+ + -.+.+.+.
T Consensus 628 v~~~~i~~a~~~Gid~~rif-d~lnd-----------~~~~~~~i~~vk~~g~-~~~~~i~ytg~~~d~~~~~~~~~~~~ 694 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIF-DSLNW-----------VENMRVAIDAVRETGK-IAEAAICYTGDILDPARAKYDLDYYV 694 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEe-ccCCh-----------HHHHHHHHHHHHHcCC-eEEEEEEEEecCCCCCCCCCCHHHHH
Confidence 233566778899999987 55433 2446667777788886 444444443 1 13566777
Q ss_pred HHHHHHHhCCCeE
Q 015808 246 DFVELTRDRPINI 258 (400)
Q Consensus 246 ~l~~~~~~~gv~~ 258 (400)
++++.+.+.|++.
T Consensus 695 ~~a~~l~~~Ga~~ 707 (1146)
T PRK12999 695 DLAKELEKAGAHI 707 (1146)
T ss_pred HHHHHHHHcCCCE
Confidence 8888888888753
No 221
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=80.72 E-value=46 Score=30.51 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=12.7
Q ss_pred HHHHHHHhhhcCCCceEEE-EecCcchhhhH
Q 015808 150 IEEACFHLSKLKGLKTLAM-TTNGLTLARKL 179 (400)
Q Consensus 150 l~~~i~~~~~~~g~~~~~i-~TNG~ll~~~~ 179 (400)
+.++++.+.+. |...+.+ .|.|...++.+
T Consensus 141 ~~~~~~~~~~~-G~~~i~l~DT~G~~~P~~v 170 (259)
T cd07939 141 LIEFAEVAQEA-GADRLRFADTVGILDPFTT 170 (259)
T ss_pred HHHHHHHHHHC-CCCEEEeCCCCCCCCHHHH
Confidence 34555554443 3333332 35555554433
No 222
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=80.33 E-value=16 Score=33.93 Aligned_cols=108 Identities=18% Similarity=0.263 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchh-hHHHHHHHhhhcC--CCceEEEEecCcchh---hhHHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRK-DIEEACFHLSKLK--GLKTLAMTTNGLTLA---RKLPKLKE 184 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~-~l~~~i~~~~~~~--g~~~~~i~TNG~ll~---~~~~~l~~ 184 (400)
...++.+.+.+.++.+.+.|+..|.+.| || +.|.. +-.++++.+.+.. .+ .+.+.+.+.... +..+...+
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~-~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRV-PVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCC-eEEEecCCccHHHHHHHHHHHHH
Confidence 4469999999999999999999999988 99 44543 3455555554321 23 455555544443 33456667
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 232 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 232 (400)
.|.+.+.+..-...+ .+-+.+++..+.+.+. ++ ++.+.
T Consensus 91 ~Gad~v~v~pP~y~~---------~~~~~~~~~~~~ia~~~~~-pi~iY 129 (281)
T cd00408 91 AGADGVLVVPPYYNK---------PSQEGIVAHFKAVADASDL-PVILY 129 (281)
T ss_pred cCCCEEEECCCcCCC---------CCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 899988886433211 2346666666666664 45 55554
No 223
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=80.15 E-value=43 Score=29.86 Aligned_cols=114 Identities=13% Similarity=0.177 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEE--CCCccchhhH-HHHHHHhhhcCCCc-eEEE-EecCcchhhhHHHHHHcCCCeEE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKDI-EEACFHLSKLKGLK-TLAM-TTNGLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~--GGEPll~~~l-~~~i~~~~~~~g~~-~~~i-~TNG~ll~~~~~~l~~~g~~~i~ 191 (400)
.++..+.+.++.+.+.|...+.+= -|---=|--| .++++.+++..... .+++ ..|. ++.+..+.++|.+.|+
T Consensus 13 aD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p---~~~i~~fa~agad~It 89 (220)
T COG0036 13 ADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENP---DRYIEAFAKAGADIIT 89 (220)
T ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCH---HHHHHHHHHhCCCEEE
Confidence 345666777777777887766663 3542111112 34555555432221 3332 2222 4667999999999999
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHH
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 250 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~ 250 (400)
|..+. .+ .+.+.|+.+++.|. ....++.|+...+.+..+++.
T Consensus 90 ~H~E~-~~-------------~~~r~i~~Ik~~G~---kaGv~lnP~Tp~~~i~~~l~~ 131 (220)
T COG0036 90 FHAEA-TE-------------HIHRTIQLIKELGV---KAGLVLNPATPLEALEPVLDD 131 (220)
T ss_pred EEecc-Cc-------------CHHHHHHHHHHcCC---eEEEEECCCCCHHHHHHHHhh
Confidence 99884 22 23455677778887 445667776455556655553
No 224
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=79.55 E-value=3.2 Score=40.09 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEE--C--CCcc-chhhHHHHHHHhhhcCCCceEEEEecCcchh------hhHHHHHHcC
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLT--G--GEPT-VRKDIEEACFHLSKLKGLKTLAMTTNGLTLA------RKLPKLKESG 186 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~--G--GEPl-l~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~------~~~~~l~~~g 186 (400)
+.++..+.++.+.+.|...|.-+ - +++. ....+.++++.+++. |+ .+.+..|+..+. +.+..|.+.|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~-~~-~v~~Disp~~l~~lg~~~~dl~~~~~lG 89 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKEL-GM-EVIADISPKVLKKLGISYDDLSFFKELG 89 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHC-T--EEEEEE-CCHHHTTT-BTTBTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHC-CC-EEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 78999999999999996654433 2 2232 235588999999985 88 799999998774 3478888999
Q ss_pred CCeEEEecCCCCHHHHHHhhcCCC-----HHH-HHHHHHHHHHcCC--CcEEEEEEEec----CCChhHHHHHHHHHHhC
Q 015808 187 LTSVNISLDTLVPAKFEFLTRRKG-----HEK-VMESINAAIEVGY--NPVKVNCVVMR----GFNDDEICDFVELTRDR 254 (400)
Q Consensus 187 ~~~i~iSldg~~~~~~~~ir~~~~-----~~~-v~~~i~~l~~~g~--~~v~i~~~v~~----~~n~~el~~l~~~~~~~ 254 (400)
++.+.+. +|++.+.-..+...+- -.. .-+-|+.|.+.|. ..+..-....| |...+.+.+.-+++++.
T Consensus 90 i~~lRlD-~Gf~~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~ 168 (357)
T PF05913_consen 90 IDGLRLD-YGFSGEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEY 168 (357)
T ss_dssp -SEEEES-SS-SCHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHT
T ss_pred CCEEEEC-CCCCHHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHC
Confidence 9988888 4555544444443300 001 2233444555443 12332223322 33445667777777777
Q ss_pred CCeEEEEeeecC
Q 015808 255 PINIRFIEFMPF 266 (400)
Q Consensus 255 gv~~~~~~~~p~ 266 (400)
|+. ...|+|-
T Consensus 169 gi~--~~AFI~g 178 (357)
T PF05913_consen 169 GIK--TAAFIPG 178 (357)
T ss_dssp T-E--EEEEE--
T ss_pred CCc--EEEEecC
Confidence 754 3445554
No 225
>PRK06769 hypothetical protein; Validated
Probab=78.43 E-value=20 Score=30.67 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=34.1
Q ss_pred ccchhhHHHHHHHhhhcCCCceEEEEecCcchh-------hhHHHHHHcCCCeEEEecC
Q 015808 144 PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-------RKLPKLKESGLTSVNISLD 195 (400)
Q Consensus 144 Pll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~-------~~~~~l~~~g~~~i~iSld 195 (400)
.-+.|+..++++++++. |+ .+.|.||..... .....+...|++.+-++.+
T Consensus 27 ~~~~pgv~e~L~~Lk~~-G~-~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 83 (173)
T PRK06769 27 FTLFPFTKASLQKLKAN-HI-KIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPH 83 (173)
T ss_pred eEECCCHHHHHHHHHHC-CC-EEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcC
Confidence 33568899999999885 88 789999975321 1234455667777666654
No 226
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=78.30 E-value=55 Score=30.00 Aligned_cols=126 Identities=14% Similarity=0.192 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhCC--CCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcC---------
Q 015808 118 SLNEILRLAYLFVTSG--VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG--------- 186 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g--~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g--------- 186 (400)
+.+.=.++++.+..+| +....|+||||... |++.. ++ .+.++||.. .+..-++.|
T Consensus 46 spdTGlRv~nSI~hygL~ItR~~ft~G~~~~~--------Yl~af-~v-~LFLSan~~----DV~~Ai~~G~~Aa~v~~~ 111 (264)
T PF06189_consen 46 SPDTGLRVFNSIRHYGLDITRAAFTGGESPYP--------YLKAF-NV-DLFLSANED----DVQEAIDAGIPAATVLPS 111 (264)
T ss_pred CHHHHHHHHHhHHHhCCcceeeeecCCCCHHH--------HHHHh-CC-ceEeeCCHH----HHHHHHHcCCCcEEeecC
Confidence 6788888998888766 77899999998642 33332 44 455555542 222222222
Q ss_pred -------CCeEEEecCCCC-------HHHHHH-----------h-----hcCCCHHHHHHHHHHHHHcC---CCcEEEEE
Q 015808 187 -------LTSVNISLDTLV-------PAKFEF-----------L-----TRRKGHEKVMESINAAIEVG---YNPVKVNC 233 (400)
Q Consensus 187 -------~~~i~iSldg~~-------~~~~~~-----------i-----r~~~~~~~v~~~i~~l~~~g---~~~v~i~~ 233 (400)
-+.+.|.+||-- +..|.. - ...+.|...+..|..+++.- -.++.+..
T Consensus 112 ~~~~~~~~~qlRIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtal 191 (264)
T PF06189_consen 112 PPDDDESDDQLRIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTAL 191 (264)
T ss_pred CCCCCCCCCceEEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 124555555521 233322 0 02344999999999998861 13565555
Q ss_pred EEecCCChhHHHHHHHHHHhCCCeEE
Q 015808 234 VVMRGFNDDEICDFVELTRDRPINIR 259 (400)
Q Consensus 234 ~v~~~~n~~el~~l~~~~~~~gv~~~ 259 (400)
|.-+ |...-+..++.++++|+.+.
T Consensus 192 VTAR--~apah~RvI~TLr~Wgv~vD 215 (264)
T PF06189_consen 192 VTAR--SAPAHERVIRTLRSWGVRVD 215 (264)
T ss_pred EEcC--CCchhHHHHHHHHHcCCcHh
Confidence 5555 44334899999999998754
No 227
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=78.28 E-value=64 Score=33.57 Aligned_cols=120 Identities=12% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEecCcc-h-hhhHHHHHHcCCCeEEE
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLT-L-ARKLPKLKESGLTSVNI 192 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~TNG~l-l-~~~~~~l~~~g~~~i~i 192 (400)
..+.+.+.++++++.+.|+..|.|----=++.|. +.++++.+++..++ .+.+.|.-+. + .-....-.++|++.|..
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~i-pi~~H~Hnt~Gla~an~laAieaGad~iD~ 228 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGL-PVHLHSHSTSGLASICHYEAVLAGCNHIDT 228 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCC-EEEEEeCCCCCcHHHHHHHHHHhCCCEEEe
Confidence 4689999999999999999999995322234444 67888888775566 6777764322 2 23334445789999999
Q ss_pred ecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 193 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
|+.|...-. |....+.++.+++ ..|+ .. +.+.+.+.++.+++.+
T Consensus 229 ai~glGg~t-----Gn~~tE~lv~~L~---~~g~-~t--------gidl~~l~~~~~~~~~ 272 (596)
T PRK14042 229 AISSFSGGA-----SHPPTEALVAALT---DTPY-DT--------ELDLNILLEIDDYFKA 272 (596)
T ss_pred ccccccCCC-----CcHhHHHHHHHHH---hcCC-CC--------CCCHHHHHHHHHHHHH
Confidence 999975321 2222566665554 3455 22 3555555555555544
No 228
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=78.11 E-value=57 Score=30.07 Aligned_cols=99 Identities=16% Similarity=0.297 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEC----CCccchhhHHHHHHHhhhcCCCceEE-EEecCcchhhhHHHHHH---cCCCeE
Q 015808 119 LNEILRLAYLFVTSGVDKIRLTG----GEPTVRKDIEEACFHLSKLKGLKTLA-MTTNGLTLARKLPKLKE---SGLTSV 190 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~~~G----GEPll~~~l~~~i~~~~~~~g~~~~~-i~TNG~ll~~~~~~l~~---~g~~~i 190 (400)
.+.+.+.++.+++.|. .|.++. +-| ...+.++++.+.+. |...+. -.|.|...++.+..+.. .... +
T Consensus 111 ~~~~~~~i~~a~~~G~-~v~~~~eda~r~~--~~~l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~ 185 (262)
T cd07948 111 IESAVEVIEFVKSKGI-EVRFSSEDSFRSD--LVDLLRVYRAVDKL-GVNRVGIADTVGIATPRQVYELVRTLRGVVS-C 185 (262)
T ss_pred HHHHHHHHHHHHHCCC-eEEEEEEeeCCCC--HHHHHHHHHHHHHc-CCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-C
Confidence 3445555566666663 344443 333 12356777777765 554444 35888777655533332 1232 5
Q ss_pred EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q 015808 191 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV 235 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v 235 (400)
.|++++.+ ++.-.+.|.-.+.++|. . .+.+++
T Consensus 186 ~i~~H~Hn-----------~~Gla~an~~~a~~aG~-~-~vd~s~ 217 (262)
T cd07948 186 DIEFHGHN-----------DTGCAIANAYAALEAGA-T-HIDTTV 217 (262)
T ss_pred eEEEEECC-----------CCChHHHHHHHHHHhCC-C-EEEEec
Confidence 55555521 23444556666667787 3 244444
No 229
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=78.03 E-value=60 Score=30.31 Aligned_cols=108 Identities=11% Similarity=0.049 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchhh-HHHHHHHhhhc--CCCceEEEEecCcchh---hhHHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLKE 184 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~--~g~~~~~i~TNG~ll~---~~~~~l~~ 184 (400)
...++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+ .+...+.. -.. +..+...+
T Consensus 15 dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~-pvi~gv~~-~t~~~i~~a~~a~~ 92 (289)
T cd00951 15 DGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRV-PVLAGAGY-GTATAIAYAQAAEK 92 (289)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCC-CEEEecCC-CHHHHHHHHHHHHH
Confidence 3569999999999999999999999988 88 555433 44555544332 133 44444433 332 33456667
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEEE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNC 233 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~ 233 (400)
.|.+.+.+.--.+ .. .+-+.+++-.+.+.+. ++ ++.+.-
T Consensus 93 ~Gad~v~~~pP~y-----~~----~~~~~i~~~f~~v~~~~~~-pi~lYn 132 (289)
T cd00951 93 AGADGILLLPPYL-----TE----APQEGLYAHVEAVCKSTDL-GVIVYN 132 (289)
T ss_pred hCCCEEEECCCCC-----CC----CCHHHHHHHHHHHHhcCCC-CEEEEe
Confidence 8998887753322 11 1235556656555553 55 665553
No 230
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=77.89 E-value=62 Score=30.40 Aligned_cols=131 Identities=14% Similarity=0.213 Sum_probs=80.7
Q ss_pred HHHhCCCCEEEEE------CCCccch--------hhHHHHHHHhhhcCCCceEEEEecC---cch-------h---hhH-
Q 015808 128 LFVTSGVDKIRLT------GGEPTVR--------KDIEEACFHLSKLKGLKTLAMTTNG---LTL-------A---RKL- 179 (400)
Q Consensus 128 ~~~~~g~~~i~~~------GGEPll~--------~~l~~~i~~~~~~~g~~~~~i~TNG---~ll-------~---~~~- 179 (400)
...+.|++.|.+. +|+|... ..+..-+..+++. |. .+.|+.-| ..+ + ..+
T Consensus 20 ~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~-G~-kViiS~GG~~g~~~~~~~~~~~~~~~a~~ 97 (294)
T cd06543 20 YAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAA-GG-DVIVSFGGASGTPLATSCTSADQLAAAYQ 97 (294)
T ss_pred HHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHc-CC-eEEEEecCCCCCccccCcccHHHHHHHHH
Confidence 3345676666542 2555431 2355666777774 65 56666533 211 0 122
Q ss_pred HHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE--ec-CCChhHHHHHHHHHHhCCC
Q 015808 180 PKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV--MR-GFNDDEICDFVELTRDRPI 256 (400)
Q Consensus 180 ~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v--~~-~~n~~el~~l~~~~~~~gv 256 (400)
..+...+++.|-|.+++.... .....++..++|+.|++... .+.+.+++ .+ |.+ .+-.++++.+++.|+
T Consensus 98 ~~i~~y~~dgiDfDiE~~~~~------d~~~~~~~~~al~~Lq~~~p-~l~vs~Tlp~~p~gl~-~~g~~~l~~a~~~Gv 169 (294)
T cd06543 98 KVIDAYGLTHLDFDIEGGALT------DTAAIDRRAQALALLQKEYP-DLKISFTLPVLPTGLT-PDGLNVLEAAAANGV 169 (294)
T ss_pred HHHHHhCCCeEEEeccCCccc------cchhHHHHHHHHHHHHHHCC-CcEEEEecCCCCCCCC-hhHHHHHHHHHHcCC
Confidence 334567899999999996421 11336888889999888754 56666655 33 222 233478888889999
Q ss_pred eEEEEeeecCCC
Q 015808 257 NIRFIEFMPFDG 268 (400)
Q Consensus 257 ~~~~~~~~p~~~ 268 (400)
.+.+++.|+++-
T Consensus 170 ~~d~VNiMtmDy 181 (294)
T cd06543 170 DLDTVNIMTMDY 181 (294)
T ss_pred CcceeeeeeecC
Confidence 988999998753
No 231
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=77.53 E-value=12 Score=35.14 Aligned_cols=109 Identities=15% Similarity=0.198 Sum_probs=66.6
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCCEEEEEC--CC-ccchhh-HHHHHHHhhhc--CCCceEEEEecCcchh---hhHHHH
Q 015808 113 KPQLLSLNEILRLAYLFVT-SGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKL 182 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~-~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~--~g~~~~~i~TNG~ll~---~~~~~l 182 (400)
....++.+.+.+.++.+.+ .|+..|.+.| || +.|..+ -.++++.+.+. ..+ .+...+...... +..+..
T Consensus 17 ~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~-~viagvg~~~t~~ai~~a~~a 95 (293)
T PRK04147 17 EDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKV-KLIAQVGSVNTAEAQELAKYA 95 (293)
T ss_pred CCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCC-CEEecCCCCCHHHHHHHHHHH
Confidence 3456999999999999999 9999999988 99 666544 44455444332 123 444444433333 334566
Q ss_pred HHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEE
Q 015808 183 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 232 (400)
Q Consensus 183 ~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 232 (400)
.+.|.+.+.+..-...+ .+-+.+++-.+.+.+. +. ++.+.
T Consensus 96 ~~~Gad~v~v~~P~y~~---------~~~~~l~~~f~~va~a~~l-Pv~iY 136 (293)
T PRK04147 96 TELGYDAISAVTPFYYP---------FSFEEICDYYREIIDSADN-PMIVY 136 (293)
T ss_pred HHcCCCEEEEeCCcCCC---------CCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 67899988877433211 1234555555555443 45 55554
No 232
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=77.46 E-value=11 Score=35.14 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchhh-HHHHHHHhhhc-CC-CceEEEEecCcchhh---hHHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL-KG-LKTLAMTTNGLTLAR---KLPKLKE 184 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~-~g-~~~~~i~TNG~ll~~---~~~~l~~ 184 (400)
...++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. .+ + .+...+.+....+ ..+...+
T Consensus 13 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~-~vi~gv~~~s~~~~i~~a~~a~~ 91 (285)
T TIGR00674 13 DGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRV-PVIAGTGSNATEEAISLTKFAED 91 (285)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCC-eEEEeCCCccHHHHHHHHHHHHH
Confidence 3569999999999999999999999987 99 555443 34444444332 12 3 4555554444433 3455667
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 232 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 232 (400)
.|.+.+.+..-.. + . .+-+.+++-.+.+.+. +. ++.+.
T Consensus 92 ~Gad~v~v~pP~y----~-~----~~~~~i~~~~~~i~~~~~~-pi~lY 130 (285)
T TIGR00674 92 VGADGFLVVTPYY----N-K----PTQEGLYQHFKAIAEEVDL-PIILY 130 (285)
T ss_pred cCCCEEEEcCCcC----C-C----CCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 8998888764321 1 1 1235555555555543 45 55444
No 233
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=77.40 E-value=52 Score=29.26 Aligned_cols=130 Identities=17% Similarity=0.132 Sum_probs=84.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEe---cCcchh----hhHHHHHHc
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTT---NGLTLA----RKLPKLKES 185 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~T---NG~ll~----~~~~~l~~~ 185 (400)
-....+.+++.+++++..++++..|++ +|.+..+.+..-+..++ .+.... .|...+ .+.+...+.
T Consensus 11 L~p~~t~~~i~~lc~~A~~~~~~avcv-------~p~~v~~a~~~l~~~~v-~v~tVigFP~G~~~~~~K~~E~~~Av~~ 82 (211)
T TIGR00126 11 LKADTTEEDIITLCAQAKTYKFAAVCV-------NPSYVPLAKELLKGTEV-RICTVVGFPLGASTTDVKLYETKEAIKY 82 (211)
T ss_pred CCCCCCHHHHHHHHHHHHhhCCcEEEe-------CHHHHHHHHHHcCCCCC-eEEEEeCCCCCCCcHHHHHHHHHHHHHc
Confidence 345689999999999999999888876 56665555544332344 333333 243332 234666778
Q ss_pred CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEE
Q 015808 186 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 259 (400)
Q Consensus 186 g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~ 259 (400)
|.+.|.+-++-. .+. .+.++.+.+-|..+.+. |. ++.+-.-... .+.+++....+.+.+.|.++.
T Consensus 83 GAdEiDvv~n~g------~l~-~g~~~~v~~ei~~i~~~~~g~-~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfv 149 (211)
T TIGR00126 83 GADEVDMVINIG------ALK-DGNEEVVYDDIRAVVEACAGV-LLKVIIETGL-LTDEEIRKACEICIDAGADFV 149 (211)
T ss_pred CCCEEEeecchH------hhh-CCcHHHHHHHHHHHHHHcCCC-eEEEEEecCC-CCHHHHHHHHHHHHHhCCCEE
Confidence 998888887642 121 24477788888877765 55 5555322222 566888999999999988753
No 234
>PF12345 DUF3641: Protein of unknown function (DUF3641) ; InterPro: IPR024521 This domain is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. It is found in association with an N-terminal radical_SAM domain (Pfam:PF04055 from PFAM).
Probab=77.26 E-value=1.2 Score=35.97 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.5
Q ss_pred CeEEEccCCeEEeccCCC
Q 015808 331 NRLRLLADGNFKVCLFGP 348 (400)
Q Consensus 331 ~~l~I~~dG~v~pC~~~~ 348 (400)
+.+.|++||.+|-|.|++
T Consensus 71 ~~iSV~wdG~lYDCDFNQ 88 (134)
T PF12345_consen 71 SQISVDWDGYLYDCDFNQ 88 (134)
T ss_pred cceeECCCCeEeCChhHH
Confidence 458999999999998853
No 235
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=76.98 E-value=14 Score=34.66 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCEEEEEC--CC-ccchhh-HHHHHHHhhhc--CCCceEEEEecCcchh---hhHHHHHH
Q 015808 115 QLLSLNEILRLAYLFVTSG-VDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLKE 184 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g-~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~--~g~~~~~i~TNG~ll~---~~~~~l~~ 184 (400)
..++.+.+.+.++.+.+.| +..|.+.| || +.|..+ -.++++.+.+. ..+ .+.+.+.+.... +..+...+
T Consensus 16 g~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~-pvi~gv~~~~t~~~i~la~~a~~ 94 (290)
T TIGR00683 16 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQI-ALIAQVGSVNLKEAVELGKYATE 94 (290)
T ss_pred CCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCC-cEEEecCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999 99999988 99 667544 44455444332 123 343333332332 33455667
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHH-c-CCCcEEEE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE-V-GYNPVKVN 232 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~-~-g~~~v~i~ 232 (400)
.|.+.|.+..-...+ .+-+.+++-.+.+.+ . +. ++.+.
T Consensus 95 ~Gad~v~v~~P~y~~---------~~~~~i~~yf~~v~~~~~~l-pv~lY 134 (290)
T TIGR00683 95 LGYDCLSAVTPFYYK---------FSFPEIKHYYDTIIAETGGL-NMIVY 134 (290)
T ss_pred hCCCEEEEeCCcCCC---------CCHHHHHHHHHHHHhhCCCC-CEEEE
Confidence 899888875332111 123566666666654 3 45 55544
No 236
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=76.87 E-value=12 Score=35.05 Aligned_cols=108 Identities=14% Similarity=0.208 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CCc-cchh-hHHHHHHHhhhc--CCCceEEEEecCcchhh---hHHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GEP-TVRK-DIEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLKE 184 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GEP-ll~~-~l~~~i~~~~~~--~g~~~~~i~TNG~ll~~---~~~~l~~ 184 (400)
...++.+.+.+.++.+.+.|+..|.+.| ||- .|.. +-.++++.+.+. ..+ .+...+.+....+ ..+...+
T Consensus 15 dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~-pvi~gv~~~~t~~ai~~a~~A~~ 93 (294)
T TIGR02313 15 NGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRI-PFAPGTGALNHDETLELTKFAEE 93 (294)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCC-cEEEECCcchHHHHHHHHHHHHH
Confidence 3569999999999999999999999988 994 4433 234444433321 123 3443333333332 3355567
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVN 232 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~ 232 (400)
.|.+.+.+..--..+ .+-+.+++-.+.+.+. +. ++.+.
T Consensus 94 ~Gad~v~v~pP~y~~---------~~~~~l~~~f~~ia~a~~~l-pv~iY 133 (294)
T TIGR02313 94 AGADAAMVIVPYYNK---------PNQEALYDHFAEVADAVPDF-PIIIY 133 (294)
T ss_pred cCCCEEEEcCccCCC---------CCHHHHHHHHHHHHHhccCC-CEEEE
Confidence 788888776432211 1235555555555544 45 55554
No 237
>PLN02334 ribulose-phosphate 3-epimerase
Probab=76.66 E-value=52 Score=29.50 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=70.7
Q ss_pred HHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcC-CCeEEE-ecCCCCHHH
Q 015808 124 RLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG-LTSVNI-SLDTLVPAK 201 (400)
Q Consensus 124 ~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g-~~~i~i-Sldg~~~~~ 201 (400)
+.++.+.+.|...|+++.|. -......+.++.+++. |. .+.+.+|.....+.+..+.+.+ ++.|.+ ++....
T Consensus 79 d~~~~~~~~gad~v~vH~~q-~~~d~~~~~~~~i~~~-g~-~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~--- 152 (229)
T PLN02334 79 DYVPDFAKAGASIFTFHIEQ-ASTIHLHRLIQQIKSA-GM-KAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGF--- 152 (229)
T ss_pred HHHHHHHHcCCCEEEEeecc-ccchhHHHHHHHHHHC-CC-eEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCC---
Confidence 34555667888999999994 0112346778888774 76 6889988633445566666653 887765 333211
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 202 FEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 202 ~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
.+...-...++.++.+++... . +.+++.-|.+.+.+.++.+ .|++
T Consensus 153 ----~~~~~~~~~~~~i~~~~~~~~-~--~~I~a~GGI~~e~i~~l~~----aGad 197 (229)
T PLN02334 153 ----GGQSFIPSMMDKVRALRKKYP-E--LDIEVDGGVGPSTIDKAAE----AGAN 197 (229)
T ss_pred ----CccccCHHHHHHHHHHHHhCC-C--CcEEEeCCCCHHHHHHHHH----cCCC
Confidence 111112456677777776632 2 2345566788887777765 4664
No 238
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=76.54 E-value=57 Score=29.28 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE--ECCCccchhhH-HHHHHHhhhc-CCCc-eEEEEecCcchhhhHHHHHHcCCCeEE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRL--TGGEPTVRKDI-EEACFHLSKL-KGLK-TLAMTTNGLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~--~GGEPll~~~l-~~~i~~~~~~-~g~~-~~~i~TNG~ll~~~~~~l~~~g~~~i~ 191 (400)
.++-.+.+.++.+.+.|+..+.+ .-|.-.=+--| .++++.+++. ..+. .+++-++ .....++.+.++|.+.|.
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~--~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVE--PVDRIVPDFADAGATTIS 90 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccC--CHHHHHHHHHHhCCCEEE
Confidence 34567777888888888766554 45663222122 3455555543 1221 3443222 134567899999999999
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHH
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~ 249 (400)
|..++. ....+.|+.++++|. +. ...+.++...+.++.+++
T Consensus 91 ~H~Ea~--------------~~~~~~l~~Ir~~g~-k~--GlalnP~T~~~~i~~~l~ 131 (223)
T PRK08745 91 FHPEAS--------------RHVHRTIQLIKSHGC-QA--GLVLNPATPVDILDWVLP 131 (223)
T ss_pred EcccCc--------------ccHHHHHHHHHHCCC-ce--eEEeCCCCCHHHHHHHHh
Confidence 998873 123456677788888 54 445666544455665554
No 239
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=76.46 E-value=9.6 Score=34.58 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEE
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMT 169 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~ 169 (400)
..++.++|.+++.++...|-..|.+-||+|+..-.-.+-++.+.+. |+ .+.+.
T Consensus 63 ~~~~q~eIn~~lv~~a~~G~~VVRLKgGDP~iFGRggEE~~~l~~~-gI-~~eVV 115 (244)
T COG0007 63 HSKPQDEINALLVELAREGKRVVRLKGGDPYIFGRGGEEIEALAEA-GI-EFEVV 115 (244)
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCeecCcHHHHHHHHHc-CC-ceEEe
Confidence 5688999999988888889889999999999998777778888875 88 67764
No 240
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=76.19 E-value=94 Score=31.60 Aligned_cols=118 Identities=14% Similarity=0.255 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcC--CCceEEEEec---CcchhhhHHHHHHcCCCeE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLK--GLKTLAMTTN---GLTLARKLPKLKESGLTSV 190 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~--g~~~~~i~TN---G~ll~~~~~~l~~~g~~~i 190 (400)
-+.+.+.++++++.+.|+..|.|---==++.|. +.++++.+++.. ++ .+.+.|. |.-+ -....-.++|++.|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~i-pI~~H~Hnt~GlA~-An~laAieAGad~v 229 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDT-RINLHCHSTTGVTL-VSLMKAIEAGVDVV 229 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCC-eEEEEeCCCCCcHH-HHHHHHHHcCCCEE
Confidence 489999999999999999999995311134444 677888887654 45 5777763 3222 33445567899999
Q ss_pred EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 191 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
..|+.|..... |....+.++..++. .|+ .. +.+.+.+.++.+++.+
T Consensus 230 Dtai~Glg~~a-----Gn~atE~vv~~L~~---~g~-~t--------giDl~~L~~i~~~~~~ 275 (499)
T PRK12330 230 DTAISSMSLGP-----GHNPTESLVEMLEG---TGY-TT--------KLDMDRLLKIRDHFKK 275 (499)
T ss_pred Eeecccccccc-----cchhHHHHHHHHHh---cCC-CC--------CCCHHHHHHHHHHHHH
Confidence 99999973221 22236666666653 455 22 3556656555554443
No 241
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=76.05 E-value=76 Score=31.79 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEe---cCcchhhhHHHHHHcCCCeEEE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTT---NGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~T---NG~ll~~~~~~l~~~g~~~i~i 192 (400)
.+.+.+.++++++.+.|+..|.|---==++.|. +.++++.+++..++ .+.+.+ .|.-+.. ...-.++|++.|..
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~-pi~~H~Hnt~GlA~AN-~laAieaGad~vD~ 228 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTV-PLEVHTHATSGIAEMT-YLKAIEAGADIIDT 228 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC-eEEEEecCCCCcHHHH-HHHHHHcCCCEEEe
Confidence 678888999999999999999985311133443 67777777765555 566665 3433322 33445779999999
Q ss_pred ecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 193 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
|+.++.+. .|....+.++.+++. .|+
T Consensus 229 sv~glg~g-----aGN~~tE~lv~~L~~---~g~ 254 (448)
T PRK12331 229 AISPFAGG-----TSQPATESMVAALQD---LGY 254 (448)
T ss_pred eccccCCC-----cCCHhHHHHHHHHHh---cCC
Confidence 99986432 232336666666643 465
No 242
>PRK08005 epimerase; Validated
Probab=75.87 E-value=57 Score=28.97 Aligned_cols=113 Identities=7% Similarity=-0.042 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE--ECCCccchhhH-HHHHHHhhhcCCCc-eEEEE-ecCcchhhhHHHHHHcCCCeEE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRL--TGGEPTVRKDI-EEACFHLSKLKGLK-TLAMT-TNGLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~--~GGEPll~~~l-~~~i~~~~~~~g~~-~~~i~-TNG~ll~~~~~~l~~~g~~~i~ 191 (400)
.++..+.+.++++.+.|+..+.+ .-|.-.-+--| .++++.+++...+. .+++- +| ....++.+.++|.+.|.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad~It 86 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPGWIF 86 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCCEEE
Confidence 34567778888888888776554 45653222222 34455555432221 34432 22 34567899999999999
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHH
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~ 249 (400)
|..++. + ...+.|+.+++.|. ++ ...+.++...+.+..++.
T Consensus 87 ~H~Ea~-~-------------~~~~~l~~Ik~~G~-k~--GlAlnP~Tp~~~i~~~l~ 127 (210)
T PRK08005 87 IHAESV-Q-------------NPSEILADIRAIGA-KA--GLALNPATPLLPYRYLAL 127 (210)
T ss_pred EcccCc-c-------------CHHHHHHHHHHcCC-cE--EEEECCCCCHHHHHHHHH
Confidence 998863 1 13456677788888 55 445666544555665555
No 243
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=75.20 E-value=74 Score=35.97 Aligned_cols=95 Identities=16% Similarity=0.268 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEec---Ccc
Q 015808 99 CHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTN---GLT 174 (400)
Q Consensus 99 C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~TN---G~l 174 (400)
+.-||.....+ +....-+.+-+.++++++.+.|+..|.|----=++.|. +.++++.+++..++ .+.+.|. |.-
T Consensus 670 ~~i~yt~~~~d--~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~-pi~~H~Hdt~Gla 746 (1143)
T TIGR01235 670 AAICYTGDILD--PARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDL-PIHFHTHDTSGIA 746 (1143)
T ss_pred EEEEEeccCCC--cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCC-eEEEEECCCCCcH
Confidence 35566542211 23345678999999999999999999985311134444 67788888765566 6777764 333
Q ss_pred hhhhHHHHHHcCCCeEEEecCCC
Q 015808 175 LARKLPKLKESGLTSVNISLDTL 197 (400)
Q Consensus 175 l~~~~~~l~~~g~~~i~iSldg~ 197 (400)
+ -....-.++|++.|..|+.|.
T Consensus 747 ~-an~laA~eaGad~vD~ai~gl 768 (1143)
T TIGR01235 747 V-ASMLAAVEAGVDVVDVAVDSM 768 (1143)
T ss_pred H-HHHHHHHHhCCCEEEecchhh
Confidence 3 223444578999999999996
No 244
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=75.11 E-value=32 Score=32.09 Aligned_cols=108 Identities=13% Similarity=0.225 Sum_probs=65.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CCc-cch-hhHHHHHHHhhhc--CCCceEEEEecCcchh---hhHHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GEP-TVR-KDIEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLKE 184 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GEP-ll~-~~l~~~i~~~~~~--~g~~~~~i~TNG~ll~---~~~~~l~~ 184 (400)
...++.+.+++.++.+.+.|+..+.+.| ||= .|. .+-.++++.+.+. ..+ .+.+.+.+.... +.++...+
T Consensus 16 dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~-~vi~gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 16 DGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRV-PVIAGVGANSTEEAIELARHAQD 94 (289)
T ss_dssp TSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSS-EEEEEEESSSHHHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCce-EEEecCcchhHHHHHHHHHHHhh
Confidence 4568999999999999999999999988 994 443 3334444443321 233 455666655454 34466677
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 232 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 232 (400)
.|.+.+.+..--.. ..+-+.+++-.+.+.+. +. ++.+.
T Consensus 95 ~Gad~v~v~~P~~~---------~~s~~~l~~y~~~ia~~~~~-pi~iY 133 (289)
T PF00701_consen 95 AGADAVLVIPPYYF---------KPSQEELIDYFRAIADATDL-PIIIY 133 (289)
T ss_dssp TT-SEEEEEESTSS---------SCCHHHHHHHHHHHHHHSSS-EEEEE
T ss_pred cCceEEEEeccccc---------cchhhHHHHHHHHHHhhcCC-CEEEE
Confidence 89998887643321 12345566666666655 34 55443
No 245
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=74.91 E-value=68 Score=29.36 Aligned_cols=51 Identities=27% Similarity=0.391 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMT 169 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~ 169 (400)
.+.+++.+.+.+..+.|-..+.+..|+|+++--..++++.+.+. ++ .+.+.
T Consensus 64 ~~~~~i~~~i~~~~~~g~~Vv~L~sGDP~~yg~~~~l~~~l~~~-~i-~veii 114 (257)
T PRK15473 64 LHLEQIIDLMEAGVKAGKTVVRLQTGDVSLYGSIREQGEELTKR-GI-DFQVV 114 (257)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeCcCchhhhhHHHHHHHHHHC-CC-CEEEe
Confidence 45677777776666666667788899999987778888888774 66 56654
No 246
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=74.66 E-value=39 Score=33.00 Aligned_cols=157 Identities=18% Similarity=0.188 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCCcc------chhhHHHHHHHhhhcCCCceEEEEec-----Ccch--hhh----
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKLKGLKTLAMTTN-----GLTL--ARK---- 178 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl------l~~~l~~~i~~~~~~~g~~~~~i~TN-----G~ll--~~~---- 178 (400)
.|..+++.-+++.+.+.|..++-+-||--+ |+.|=-+-++.+++.-+...+.+.-- |+.- ++.
T Consensus 24 Rmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~F 103 (472)
T COG5016 24 RMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKF 103 (472)
T ss_pred HHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHH
Confidence 477899999999999999999999999754 33332233444443211111111111 2211 333
Q ss_pred HHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcE--EEEEEEecCCChhHHHHHHHHHHhCCC
Q 015808 179 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPV--KVNCVVMRGFNDDEICDFVELTRDRPI 256 (400)
Q Consensus 179 ~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v--~i~~~v~~~~n~~el~~l~~~~~~~gv 256 (400)
+++..+.|++.+.| +|+.++ -...-.+++..++.|. .+ .+.+++.|-++.+...++.+.+.+.|+
T Consensus 104 v~ka~~nGidvfRi-FDAlND-----------~RNl~~ai~a~kk~G~-h~q~~i~YT~sPvHt~e~yv~~akel~~~g~ 170 (472)
T COG5016 104 VEKAAENGIDVFRI-FDALND-----------VRNLKTAIKAAKKHGA-HVQGTISYTTSPVHTLEYYVELAKELLEMGV 170 (472)
T ss_pred HHHHHhcCCcEEEe-chhccc-----------hhHHHHHHHHHHhcCc-eeEEEEEeccCCcccHHHHHHHHHHHHHcCC
Confidence 34455678876665 455432 2334455666667776 44 455666675677777777777778888
Q ss_pred eEEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 015808 257 NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 291 (400)
Q Consensus 257 ~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 291 (400)
+..-+.-+. |- ..+....|+++.+++.++
T Consensus 171 DSIciKDma--Gl----ltP~~ayelVk~iK~~~~ 199 (472)
T COG5016 171 DSICIKDMA--GL----LTPYEAYELVKAIKKELP 199 (472)
T ss_pred CEEEeeccc--cc----CChHHHHHHHHHHHHhcC
Confidence 643332211 10 011223466677777664
No 247
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=74.58 E-value=76 Score=29.74 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchhh-HHHHHHHhhhc-CCCceEEEEecCcchhh---hHHHHHHc
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL-KGLKTLAMTTNGLTLAR---KLPKLKES 185 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~-~g~~~~~i~TNG~ll~~---~~~~l~~~ 185 (400)
...++.+.+.++++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. .+-..+...+.. .+.+ ..+...+.
T Consensus 20 dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~ 98 (296)
T TIGR03249 20 DGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKA 98 (296)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHh
Confidence 3569999999999999999999999988 99 555433 44455443332 121144444433 3433 33555678
Q ss_pred CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEE
Q 015808 186 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 232 (400)
Q Consensus 186 g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 232 (400)
|.+.+.+.--.+ .. .+-+.+++-.+.+.+. ++ ++.+.
T Consensus 99 Gadav~~~pP~y-----~~----~s~~~i~~~f~~v~~a~~~-pvilY 136 (296)
T TIGR03249 99 GADGYLLLPPYL-----IN----GEQEGLYAHVEAVCESTDL-GVIVY 136 (296)
T ss_pred CCCEEEECCCCC-----CC----CCHHHHHHHHHHHHhccCC-CEEEE
Confidence 888887653221 11 1235555555555553 45 55554
No 248
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=74.25 E-value=88 Score=32.54 Aligned_cols=118 Identities=20% Similarity=0.312 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEec---CcchhhhHHHHHHcCCCeEEE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTN---GLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~TN---G~ll~~~~~~l~~~g~~~i~i 192 (400)
.+.+.+.++++++.+.|...|.|----=++.|. +.++++.+++..++ .+.+.|. |.-+ -....-.++|++.|..
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~-pi~~H~Hnt~Gla~-An~laAveaGa~~vd~ 223 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGL-PVHLHSHATTGMAE-MALLKAIEAGADGIDT 223 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCC-ceEEEecCCCCcHH-HHHHHHHHhCCCEEEe
Confidence 478999999999999999999985311124443 67888888765455 5666653 3323 2334445779999999
Q ss_pred ecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 193 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
|+.|.... .|....+.++.+++ ..|+ .. |.+.+.+.++.+++.+
T Consensus 224 ai~GlG~~-----tGn~~le~vv~~L~---~~g~-~t--------gid~~~L~~l~~~~~~ 267 (582)
T TIGR01108 224 AISSMSGG-----TSHPPTETMVAALR---GTGY-DT--------GLDIELLLEIAAYFRE 267 (582)
T ss_pred cccccccc-----ccChhHHHHHHHHH---hcCC-Cc--------ccCHHHHHHHHHHHHH
Confidence 99997541 23233677776665 3465 22 3455555555554443
No 249
>PLN02540 methylenetetrahydrofolate reductase
Probab=74.23 E-value=1e+02 Score=31.83 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCccch-----------hhHHHHHHHhhhcCCCceEEEEecCc
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-----------KDIEEACFHLSKLKGLKTLAMTTNGL 173 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~-----------~~l~~~i~~~~~~~g~~~~~i~TNG~ 173 (400)
..++.+++...+..+.+.|+++|....|+|--. ..-.++|+++++..+- .+.|...|+
T Consensus 68 rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd-~f~IgVAGY 136 (565)
T PLN02540 68 TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGD-YFGITVAGY 136 (565)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCC-CceEEEeCC
Confidence 457788999999999999999998888777532 1256888888875332 234444443
No 250
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=73.77 E-value=27 Score=32.41 Aligned_cols=108 Identities=17% Similarity=0.227 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchhh-HHHHHHHhhhcC--CCceEEEEecCcchh---hhHHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLK--GLKTLAMTTNGLTLA---RKLPKLKE 184 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~~--g~~~~~i~TNG~ll~---~~~~~l~~ 184 (400)
...++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+.. .+ .+.+.+.+.... +.++...+
T Consensus 15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~-~vi~gv~~~~~~~~~~~a~~a~~ 93 (284)
T cd00950 15 DGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRV-PVIAGTGSNNTAEAIELTKRAEK 93 (284)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCC-cEEeccCCccHHHHHHHHHHHHH
Confidence 3569999999999999999999999988 88 444433 455555554432 23 344444443332 34466677
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 232 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 232 (400)
.|.+.|.+.--...+ .+-+.+++-.+.+.+. ++ ++.+.
T Consensus 94 ~G~d~v~~~~P~~~~---------~~~~~l~~~~~~ia~~~~~-pi~lY 132 (284)
T cd00950 94 AGADAALVVTPYYNK---------PSQEGLYAHFKAIAEATDL-PVILY 132 (284)
T ss_pred cCCCEEEEcccccCC---------CCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 899888887433211 1235566666666554 55 65554
No 251
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=73.27 E-value=69 Score=28.67 Aligned_cols=114 Identities=11% Similarity=0.174 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE--ECCCccchhhH-HHHHHHhhhc-CCCc-eEEEEecCcchhhhHHHHHHcCCCeEE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRL--TGGEPTVRKDI-EEACFHLSKL-KGLK-TLAMTTNGLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~--~GGEPll~~~l-~~~i~~~~~~-~g~~-~~~i~TNG~ll~~~~~~l~~~g~~~i~ 191 (400)
.++..+.+.++.+.+.|+..+.+ .-|.-.=+--| .++++.+++. ..+. .+++-+. ...+.++.+.++|.+.|.
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~--~p~~~i~~~~~~gad~i~ 86 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVK--PVDRIIPDFAKAGASMIT 86 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccC--CHHHHHHHHHHhCCCEEE
Confidence 35567778888888888766554 55663222222 3445555543 1221 3443222 134567899999999999
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHH
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~ 249 (400)
|..+.. +...+.|+.+++.|. +. ...+.++...+.+..+++
T Consensus 87 ~H~Ea~--------------~~~~~~l~~ik~~g~-k~--GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 87 FHVEAS--------------EHVDRTLQLIKEHGC-QA--GVVLNPATPLHHLEYIMD 127 (220)
T ss_pred EcccCc--------------ccHHHHHHHHHHcCC-cE--EEEeCCCCCHHHHHHHHH
Confidence 999873 123456677778888 54 445666544455555554
No 252
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=72.95 E-value=77 Score=29.09 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCC-EEEEECCCccchhh-HHHHHHHhhhcCCCceEEE-EecCcchhhhHH
Q 015808 120 NEILRLAYLFVTSGVD-KIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLP 180 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~-~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i-~TNG~ll~~~~~ 180 (400)
+.+.+.++.+++.|.. .+.+...-. ..++ +.++++.+.+. |...+.+ .|.|.+.++.+.
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~-G~d~i~l~DT~G~~~P~~v~ 173 (263)
T cd07943 112 DVSEQHIGAARKLGMDVVGFLMMSHM-ASPEELAEQAKLMESY-GADCVYVTDSAGAMLPDDVR 173 (263)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeccC-CCHHHHHHHHHHHHHc-CCCEEEEcCCCCCcCHHHHH
Confidence 3455566666666632 122211111 2223 45666666553 4433333 466666654443
No 253
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=72.75 E-value=27 Score=32.40 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCC-------------ccchhhHHHHHHHhhhcCCCceEEEEecCcc------
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE-------------PTVRKDIEEACFHLSKLKGLKTLAMTTNGLT------ 174 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-------------Pll~~~l~~~i~~~~~~~g~~~~~i~TNG~l------ 174 (400)
...++.+..++.|+.+++.|+..+.+-.|= |.-..++.++++|+++. |+ .+.+-.|-..
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K-gV-gi~lw~~~~~~~~~~~ 103 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEK-GV-GIWLWYHSETGGNVAN 103 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHT-T--EEEEEEECCHTTBHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHc-CC-CEEEEEeCCcchhhHh
Confidence 345799999999999999999999995332 22345689999999985 87 5666665433
Q ss_pred h----hhhHHHHHHcCCCeEEEec
Q 015808 175 L----ARKLPKLKESGLTSVNISL 194 (400)
Q Consensus 175 l----~~~~~~l~~~g~~~i~iSl 194 (400)
+ ++.+..+.+.|+..|.|.+
T Consensus 104 ~~~~~~~~f~~~~~~Gv~GvKidF 127 (273)
T PF10566_consen 104 LEKQLDEAFKLYAKWGVKGVKIDF 127 (273)
T ss_dssp HHCCHHHHHHHHHHCTEEEEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCEEeeCc
Confidence 2 2233444555555555543
No 254
>PRK14057 epimerase; Provisional
Probab=72.12 E-value=80 Score=28.95 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE--ECCCccchhhH-HHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEe
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRL--TGGEPTVRKDI-EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 193 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~--~GGEPll~~~l-~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iS 193 (400)
.++-.+.+.++.+.+.|+..+.+ .-|.-.=+--| .++++.+++...+ .+++=++ .....++.+.++|.+.|.|.
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~~~p~-DvHLMV~--~P~~~i~~~~~aGad~It~H 105 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIK-DVHLMVA--DQWTAAQACVKAGAHCITLQ 105 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhccCCCe-eEEeeeC--CHHHHHHHHHHhCCCEEEEe
Confidence 45667888888888888776555 45652222112 2344444432122 3443222 13456789999999999999
Q ss_pred cCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCC------cEEEEEEEecCCChhHHHHHHH
Q 015808 194 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYN------PVKVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 194 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~------~v~i~~~v~~~~n~~el~~l~~ 249 (400)
.++. + ...+.|+.+++.|.+ .+.....+.|+...+.++.++.
T Consensus 106 ~Ea~-~-------------~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~ 153 (254)
T PRK14057 106 AEGD-I-------------HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS 153 (254)
T ss_pred eccc-c-------------CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH
Confidence 9873 1 133455666666751 2456777888655555665555
No 255
>PRK03739 2-isopropylmalate synthase; Validated
Probab=71.82 E-value=1.3e+02 Score=31.14 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=79.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCC--ceEEEEecCcchhhhHHHHH----Hc
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL--KTLAMTTNGLTLARKLPKLK----ES 185 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~--~~~~i~TNG~ll~~~~~~l~----~~ 185 (400)
.....++.++=.++++.+.+.|++.|-.. =|-+.+.=.++++.+.+. +. ....+..=.......++.-. ..
T Consensus 44 ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~G--fP~~s~~e~e~v~~i~~~-~~~~~~~~i~~l~r~~~~di~~a~~a~~~~ 120 (552)
T PRK03739 44 ALIEPMSPERKLRMFDLLVKIGFKEIEVG--FPSASQTDFDFVRELIEE-GLIPDDVTIQVLTQAREHLIERTFEALEGA 120 (552)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEE--CCCcChHHHHHHHHHHHh-cCCCCCCEEEEEeccchhHHHHHHHHhcCC
Confidence 34567999999999999999999988765 488887766778877543 21 11222211111223343333 33
Q ss_pred CCCeEEEecCCCCHHHHHHhhcCC--CHHHHHHHHHHHHHcCCC--cEEEEEEEecC----CChhHHHHHHHHHHh
Q 015808 186 GLTSVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYN--PVKVNCVVMRG----FNDDEICDFVELTRD 253 (400)
Q Consensus 186 g~~~i~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~--~v~i~~~v~~~----~n~~el~~l~~~~~~ 253 (400)
+...|.+.+-+.+......++... ..+.+.+.++.+++.|.. ...+.+.+... .+.+.+.++++.+.+
T Consensus 121 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~ 196 (552)
T PRK03739 121 KRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVID 196 (552)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHH
Confidence 334688887774322222333211 166677777777777631 11244444432 244667777777665
No 256
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.71 E-value=91 Score=29.41 Aligned_cols=136 Identities=13% Similarity=0.138 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEE-CCCccchhhHHHHHHHhhhcCC-CceEEEEecCcchhhhH----HHHHHcCCCeEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLT-GGEPTVRKDIEEACFHLSKLKG-LKTLAMTTNGLTLARKL----PKLKESGLTSVN 191 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~-GGEPll~~~l~~~i~~~~~~~g-~~~~~i~TNG~ll~~~~----~~l~~~g~~~i~ 191 (400)
+.+++.+.++++.+.|.+.|.+- |+.| .+..+.++.+++..| + .+.+..|+..-.+.. +.|.+.++.+|-
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~---~~d~~~v~~lr~~~g~~-~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iE 209 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDL---EDDIERIRAIREAAPDA-RLRVDANQGWTPEEAVELLRELAELGVELIE 209 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCh---hhHHHHHHHHHHhCCCC-eEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 57778888888888898887774 5544 234566777766434 4 789999986543332 445566787777
Q ss_pred EecCCCCHHHHHHhhcCCC--------HHHHHHHHHHHHHcC-CCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEE
Q 015808 192 ISLDTLVPAKFEFLTRRKG--------HEKVMESINAAIEVG-YNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRF 260 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~--------~~~v~~~i~~l~~~g-~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~ 260 (400)
=-+...+-+.+.+++...+ ... .+.++.+.+.+ ..-+.+.....- -..+..++.+++.+.|+.+..
T Consensus 210 eP~~~~d~~~~~~L~~~~~ipIa~~E~~~~-~~~~~~~~~~~~~d~v~~~~~~~G--Gi~~~~~~~~~a~~~gi~~~~ 284 (316)
T cd03319 210 QPVPAGDDDGLAYLRDKSPLPIMADESCFS-AADAARLAGGGAYDGINIKLMKTG--GLTEALRIADLARAAGLKVMV 284 (316)
T ss_pred CCCCCCCHHHHHHHHhcCCCCEEEeCCCCC-HHHHHHHHhcCCCCEEEEeccccC--CHHHHHHHHHHHHHcCCCEEE
Confidence 5555444455666653221 111 12333444433 322333322221 356777888888888876543
No 257
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=71.33 E-value=44 Score=29.47 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCEEE--EECCC--ccchhhHHHHHHHhhhcCCCc-eEEEEecCcchhhhHHHHHHcCCCeEEEe
Q 015808 119 LNEILRLAYLFVTSGVDKIR--LTGGE--PTVRKDIEEACFHLSKLKGLK-TLAMTTNGLTLARKLPKLKESGLTSVNIS 193 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~--~~GGE--Pll~~~l~~~i~~~~~~~g~~-~~~i~TNG~ll~~~~~~l~~~g~~~i~iS 193 (400)
.-.+.+.++.+.+.|+..+. +.-|. |-+... .++++.+++...+. .+++-+.- ..+.++.+.++|.+.|.+.
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g-~~~i~~i~~~~~~~~DvHLMv~~--P~~~i~~~~~~g~~~i~~H 87 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFG-PDIIKAIRKITDLPLDVHLMVEN--PERYIEEFAEAGADYITFH 87 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B--HHHHHHHHTTSSSEEEEEEESSS--GGGHHHHHHHHT-SEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecccccCCcccCC-HHHHHHHhhcCCCcEEEEeeecc--HHHHHHHHHhcCCCEEEEc
Confidence 34566677777788877554 45566 433211 35566666543331 34432221 2456799999999999999
Q ss_pred cCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHH
Q 015808 194 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 194 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~ 249 (400)
+++. +...+.++.++++|. .+ ...+.++...+.++++++
T Consensus 88 ~E~~--------------~~~~~~i~~ik~~g~-k~--GialnP~T~~~~~~~~l~ 126 (201)
T PF00834_consen 88 AEAT--------------EDPKETIKYIKEAGI-KA--GIALNPETPVEELEPYLD 126 (201)
T ss_dssp GGGT--------------TTHHHHHHHHHHTTS-EE--EEEE-TTS-GGGGTTTGC
T ss_pred ccch--------------hCHHHHHHHHHHhCC-CE--EEEEECCCCchHHHHHhh
Confidence 8863 123345677778888 55 445667544455554443
No 258
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=71.21 E-value=19 Score=33.91 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CC-ccchhh-HHHHHHHhhhc--CCCceEEEEecCcchh---hhHHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLKE 184 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~--~g~~~~~i~TNG~ll~---~~~~~l~~ 184 (400)
...++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+ .+...+.+ ... +..+...+
T Consensus 22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~-pvi~gv~~-~t~~~i~~~~~a~~ 99 (303)
T PRK03620 22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRV-PVIAGAGG-GTAQAIEYAQAAER 99 (303)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCC-cEEEecCC-CHHHHHHHHHHHHH
Confidence 3569999999999999999999999988 99 555543 44555544321 123 34444433 333 33455667
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 232 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 232 (400)
.|.+.+.+.--. |-. .+-+.+.+..+.+.+. ++ ++.+.
T Consensus 100 ~Gadav~~~pP~-----y~~----~~~~~i~~~f~~va~~~~l-pi~lY 138 (303)
T PRK03620 100 AGADGILLLPPY-----LTE----APQEGLAAHVEAVCKSTDL-GVIVY 138 (303)
T ss_pred hCCCEEEECCCC-----CCC----CCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 899888774322 111 1235555555555553 55 65554
No 259
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=71.20 E-value=66 Score=27.54 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHH-HHhhhcCCCceEEEEecCcc----hh---hhHHHHHHcCCCe
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEAC-FHLSKLKGLKTLAMTTNGLT----LA---RKLPKLKESGLTS 189 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i-~~~~~~~g~~~~~i~TNG~l----l~---~~~~~l~~~g~~~ 189 (400)
+.+.+.++++.+.+.|+..|.+.| ++.+.+ +..... .+ .+.+.++... .. +..+...+.|.+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------~~i~~~~~~~~~~-~~-~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~ 81 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------GYVRLAADALAGS-DV-PVIVVVGFPTGLTTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------HHHHHHHHHhCCC-CC-eEEEEecCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 889999999999999999988887 433322 222220 23 3444444433 22 4557778889988
Q ss_pred EEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc---CCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 190 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV---GYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 190 i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~---g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
+.+.... |-.. ....+.+.+.++.+.+. ++ ++.+..........+++.++.+.+.+.|++
T Consensus 82 i~v~~~~-----~~~~--~~~~~~~~~~~~~i~~~~~~~~-pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~ 144 (201)
T cd00945 82 IDVVINI-----GSLK--EGDWEEVLEEIAAVVEAADGGL-PLKVILETRGLKTADEIAKAARIAAEAGAD 144 (201)
T ss_pred EEEeccH-----HHHh--CCCHHHHHHHHHHHHHHhcCCc-eEEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 8875422 2111 11256667766666665 66 665554322212456777777777676765
No 260
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.00 E-value=38 Score=32.44 Aligned_cols=81 Identities=21% Similarity=0.349 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHHH-------hCCCCEEEEECCC---------ccch-------------hh-HHHHHHHhhhcCC-
Q 015808 114 PQLLSLNEILRLAYLFV-------TSGVDKIRLTGGE---------PTVR-------------KD-IEEACFHLSKLKG- 162 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~-------~~g~~~i~~~GGE---------Pll~-------------~~-l~~~i~~~~~~~g- 162 (400)
.+.|+.++|..+++.+. +.|.+.|.|+||. |..+ .. ..++++.+++.-|
T Consensus 136 p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~ 215 (338)
T cd04733 136 PRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGP 215 (338)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 46799999999887653 4688999998875 7754 22 3588888886543
Q ss_pred -CceEEEEec-------Ccchhh---hHHHHHHcCCCeEEEecC
Q 015808 163 -LKTLAMTTN-------GLTLAR---KLPKLKESGLTSVNISLD 195 (400)
Q Consensus 163 -~~~~~i~TN-------G~ll~~---~~~~l~~~g~~~i~iSld 195 (400)
+ .+.+--| |.-.++ .++.|.+.|++.|.||.=
T Consensus 216 d~-~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 216 GF-PVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred CC-eEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 3 4555444 433332 236677788999998853
No 261
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=70.76 E-value=93 Score=29.10 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEE
Q 015808 119 LNEILRLAYLFVTSGVDKIRL 139 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~~ 139 (400)
.+.+.++++.+.+.|+..|.|
T Consensus 154 ~~~~~~~~~~~~~~G~d~i~l 174 (287)
T PRK05692 154 PEAVADVAERLFALGCYEISL 174 (287)
T ss_pred HHHHHHHHHHHHHcCCcEEEe
Confidence 344444444444444444443
No 262
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=70.74 E-value=1.2e+02 Score=31.53 Aligned_cols=118 Identities=16% Similarity=0.230 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEecCcc-h-hhhHHHHHHcCCCeEEEec
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLT-L-ARKLPKLKESGLTSVNISL 194 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~TNG~l-l-~~~~~~l~~~g~~~i~iSl 194 (400)
+.+.+.++++++.+.|...|.|.---=++.|. +.++++.+++..++ .+.+.|.-+. + .-....-.++|++.|..++
T Consensus 153 ~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~-pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai 231 (593)
T PRK14040 153 TLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDV-PLHLHCHATTGLSTATLLKAIEAGIDGVDTAI 231 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCC-eEEEEECCCCchHHHHHHHHHHcCCCEEEecc
Confidence 67888888888888898888885311124444 67777777765455 5666663221 2 2333444577899999999
Q ss_pred CCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 195 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 195 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
.|+..- .|....+.++.+++. .|+ .. +.+.+.+.++.+++.+
T Consensus 232 ~glG~~-----~Gn~~le~vv~~L~~---~~~-~~--------gidl~~l~~is~~~~~ 273 (593)
T PRK14040 232 SSMSMT-----YGHSATETLVATLEG---TER-DT--------GLDILKLEEIAAYFRE 273 (593)
T ss_pred cccccc-----ccchhHHHHHHHHHh---cCC-Cc--------CCCHHHHHHHHHHHHH
Confidence 997542 232336666666643 455 22 3455555555554443
No 263
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=70.70 E-value=82 Score=28.43 Aligned_cols=113 Identities=13% Similarity=0.163 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE--ECCCccchhhH-HHHHHHhhhcCCCc-eEEE-EecCcchhhhHHHHHHcCCCeEEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRL--TGGEPTVRKDI-EEACFHLSKLKGLK-TLAM-TTNGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~--~GGEPll~~~l-~~~i~~~~~~~g~~-~~~i-~TNG~ll~~~~~~l~~~g~~~i~i 192 (400)
++-.+.+.++.+.+ |+..+.+ .-|.-.=+--| .++++.+++...+. .+++ ++| ..+.++.+.++|.+.|.|
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~---P~~~i~~~~~aGad~it~ 88 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTD---PQDYIDQLADAGADFITL 88 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecC---HHHHHHHHHHcCCCEEEE
Confidence 44566667777766 7665554 45652222112 34555665432221 3333 233 345678999999999999
Q ss_pred ecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHH
Q 015808 193 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 250 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~ 250 (400)
..++.. ....+.|+.++++|. +. ...+.++...+.+..++..
T Consensus 89 H~Ea~~-------------~~~~~~i~~Ik~~G~-ka--GlalnP~T~~~~l~~~l~~ 130 (229)
T PRK09722 89 HPETIN-------------GQAFRLIDEIRRAGM-KV--GLVLNPETPVESIKYYIHL 130 (229)
T ss_pred CccCCc-------------chHHHHHHHHHHcCC-CE--EEEeCCCCCHHHHHHHHHh
Confidence 998742 123456778888888 55 4456665444555555553
No 264
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=70.23 E-value=22 Score=33.18 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=51.8
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEEC--CC-ccchhh-HHHHHHHhhhc--CCCceEEEEecCcchh---hhHHHHH
Q 015808 114 PQLLSLNEILRLAYLFVTS-GVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLK 183 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~-g~~~i~~~G--GE-Pll~~~-l~~~i~~~~~~--~g~~~~~i~TNG~ll~---~~~~~l~ 183 (400)
...++.+.+.+.++.+.+. |+..|.+.| || +.|..+ -.++++.+.+. ..+ .+...+.+..+. +..+...
T Consensus 15 dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~-~viagv~~~~~~~ai~~a~~a~ 93 (288)
T cd00954 15 NGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKV-TLIAHVGSLNLKESQELAKHAE 93 (288)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCC-eEEeccCCCCHHHHHHHHHHHH
Confidence 3469999999999999999 999999988 89 555433 34445444332 123 444444443343 3345667
Q ss_pred HcCCCeEEEe
Q 015808 184 ESGLTSVNIS 193 (400)
Q Consensus 184 ~~g~~~i~iS 193 (400)
+.|.+.+.+.
T Consensus 94 ~~Gad~v~~~ 103 (288)
T cd00954 94 ELGYDAISAI 103 (288)
T ss_pred HcCCCEEEEe
Confidence 7888887765
No 265
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=70.13 E-value=93 Score=28.85 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCCCE-EEE--ECCCccchhh-HHHHHHHhhhcCCCceEEE-EecCcchhhhHHHHHHc---CCCeE
Q 015808 119 LNEILRLAYLFVTSGVDK-IRL--TGGEPTVRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLPKLKES---GLTSV 190 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~-i~~--~GGEPll~~~-l~~~i~~~~~~~g~~~~~i-~TNG~ll~~~~~~l~~~---g~~~i 190 (400)
.+.+...++.+++.|... +.+ ..+ +-..++ +.++++.+.+. |...+.+ .|.|.+.++.+..+... .+. +
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~~-Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~ 193 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICYTGS-PVHTLEYYVKLAKELEDM-GADSICIKDMAGLLTPYAAYELVKALKKEVG-L 193 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCC-CCCCHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-C
Confidence 677788888888888432 112 223 333344 56777777775 5544443 58888776555433322 132 5
Q ss_pred EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEec-C--CChhHHHHHHHHHHhCCCe
Q 015808 191 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-G--FNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~-~--~n~~el~~l~~~~~~~gv~ 257 (400)
.|++++.+ ++.-.+.|...+.++|. . .+.+++.- | --.-.+++++..+...|++
T Consensus 194 ~l~~H~Hn-----------d~GlA~aN~laA~~aGa-~-~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~ 250 (275)
T cd07937 194 PIHLHTHD-----------TSGLAVATYLAAAEAGV-D-IVDTAISPLSGGTSQPSTESMVAALRGTGRD 250 (275)
T ss_pred eEEEEecC-----------CCChHHHHHHHHHHhCC-C-EEEEecccccCCcCChhHHHHHHHHHccCCC
Confidence 55555521 23455666666667787 3 24444421 1 1113567777777666553
No 266
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=69.94 E-value=29 Score=27.66 Aligned_cols=71 Identities=23% Similarity=0.203 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCe
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 189 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~ 189 (400)
...+.+++.+.+. +.+...|.+++-.+...+.+.++++.+++. +...+.+.--|...++....+.++|++.
T Consensus 35 ~~vp~e~~~~~a~---~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~-~~~~i~i~~GG~~~~~~~~~~~~~G~d~ 105 (122)
T cd02071 35 LRQTPEEIVEAAI---QEDVDVIGLSSLSGGHMTLFPEVIELLREL-GAGDILVVGGGIIPPEDYELLKEMGVAE 105 (122)
T ss_pred CCCCHHHHHHHHH---HcCCCEEEEcccchhhHHHHHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHCCCCE
Confidence 3466776555544 566777888876665656677888887775 3323444455555566678888888753
No 267
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.02 E-value=1e+02 Score=29.73 Aligned_cols=83 Identities=22% Similarity=0.333 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHHH-------hCCCCEEEEECCC---------ccchh-------------h-HHHHHHHhhhcCC-
Q 015808 114 PQLLSLNEILRLAYLFV-------TSGVDKIRLTGGE---------PTVRK-------------D-IEEACFHLSKLKG- 162 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~-------~~g~~~i~~~GGE---------Pll~~-------------~-l~~~i~~~~~~~g- 162 (400)
.+.||.++|.++++.+. +.|.+.|.|++|. |..+. . +.++++.+++.-|
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~ 210 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDK 210 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 56799999999988664 4688888887643 54432 2 4688888876543
Q ss_pred ---Cc-eEEEEec-------Ccchhh---hHHHHHHcCCCeEEEecCC
Q 015808 163 ---LK-TLAMTTN-------GLTLAR---KLPKLKESGLTSVNISLDT 196 (400)
Q Consensus 163 ---~~-~~~i~TN-------G~ll~~---~~~~l~~~g~~~i~iSldg 196 (400)
.. .+.+--| |..+++ .+..|.+.|++.|.||.-+
T Consensus 211 ~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 211 HADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred ccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 11 2333223 333332 2356667899999998644
No 268
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=68.87 E-value=96 Score=28.54 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEEC-CCccchhh-HHHHHHHhhhcCCCceEEE-EecCcchhhhH
Q 015808 120 NEILRLAYLFVTSGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKL 179 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~G-GEPll~~~-l~~~i~~~~~~~g~~~~~i-~TNG~ll~~~~ 179 (400)
+.+...++.+++.|. .|.|+. -.+-..++ +.++++.+.+. |...+.+ .|.|...++.+
T Consensus 114 ~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~i~l~DT~G~~~P~~v 174 (268)
T cd07940 114 ERAVEAVEYAKSHGL-DVEFSAEDATRTDLDFLIEVVEAAIEA-GATTINIPDTVGYLTPEEF 174 (268)
T ss_pred HHHHHHHHHHHHcCC-eEEEeeecCCCCCHHHHHHHHHHHHHc-CCCEEEECCCCCCCCHHHH
Confidence 444455556666663 344432 11222333 46666666654 4433333 46776665444
No 269
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=68.69 E-value=1.4e+02 Score=30.20 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEe---cCcchhhhHHHHHHcCCCeEEE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTT---NGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~T---NG~ll~~~~~~l~~~g~~~i~i 192 (400)
.+.+.+.++++++.+.|+..|.|---==++.|. +.++++.+++..++ .+.+.| .|.-+.. ...-.++|++.|..
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~v-pI~~H~Hnt~GlA~AN-~laAieaGad~vD~ 227 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGV-PVEVHSHCTTGLASLA-YLAAVEAGADMFDT 227 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCC-ceEEEecCCCCcHHHH-HHHHHHhCCCEEEe
Confidence 478899999999999999999995311123443 67788888765555 566665 3433323 33445779999999
Q ss_pred ecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 193 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
|+.++.+. .+....+.++.+++ ..|+ .. |.+.+.+.++.+++++
T Consensus 228 sv~~~g~g-----agN~atE~lv~~L~---~~g~-~t--------giDl~~L~~~~~~~~~ 271 (467)
T PRK14041 228 AISPFSMG-----TSQPPFESMYYAFR---ENGK-ET--------DFDRKALKFLVEYFTK 271 (467)
T ss_pred eccccCCC-----CCChhHHHHHHHHH---hcCC-CC--------CcCHHHHHHHHHHHHH
Confidence 99987542 12222566666554 3455 21 3555555555555443
No 270
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=68.60 E-value=63 Score=28.61 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=74.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEECCC-----ccchh--h---HHHHHHHhhh-cCCCceEEEEecCcchhhhHHH
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-----PTVRK--D---IEEACFHLSK-LKGLKTLAMTTNGLTLARKLPK 181 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-----Pll~~--~---l~~~i~~~~~-~~g~~~~~i~TNG~ll~~~~~~ 181 (400)
.....+.+++.+-+.++.+.|..-|.+.+|- +.... + +..+++.+.+ ..++ .++|.|-= .+.++.
T Consensus 12 g~~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~-plSIDT~~---~~v~~~ 87 (210)
T PF00809_consen 12 GGRKFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV-PLSIDTFN---PEVAEA 87 (210)
T ss_dssp TTCHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS-EEEEEESS---HHHHHH
T ss_pred cCcccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe-EEEEECCC---HHHHHH
Confidence 3445667777777888889998888887754 22322 2 5566666664 3366 78998842 345555
Q ss_pred HHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE--ecCC--Ch----hHHHHHHHHHHh
Q 015808 182 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV--MRGF--ND----DEICDFVELTRD 253 (400)
Q Consensus 182 l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v--~~~~--n~----~el~~l~~~~~~ 253 (400)
-++.|.+ +..++.|... .+ +.+..+.++|. .+.+...- ..+. +. +-+.++++++.+
T Consensus 88 aL~~g~~-~ind~~~~~~-----------~~---~~~~l~a~~~~-~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (210)
T PF00809_consen 88 ALKAGAD-IINDISGFED-----------DP---EMLPLAAEYGA-PVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEE 151 (210)
T ss_dssp HHHHTSS-EEEETTTTSS-----------ST---THHHHHHHHTS-EEEEESESSETTTTTSSHHHSHSHHHHHHHHHHH
T ss_pred HHHcCcc-eEEecccccc-----------cc---hhhhhhhcCCC-EEEEEecccccccccccchhhhhHHHHHHHHHHH
Confidence 5555774 5555555421 01 22345566777 66666666 2111 11 225666666666
Q ss_pred -------CCCeEEEEeeecC
Q 015808 254 -------RPINIRFIEFMPF 266 (400)
Q Consensus 254 -------~gv~~~~~~~~p~ 266 (400)
.|+.-.-+-+-|-
T Consensus 152 ~i~~l~~~Gi~~~~Ii~DPg 171 (210)
T PF00809_consen 152 RIEALEKAGIPRERIILDPG 171 (210)
T ss_dssp HHHHHHHTT--GGGEEEETT
T ss_pred HHHHHHHcCCCHHHEeeccc
Confidence 6874334444453
No 271
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=68.58 E-value=1.5e+02 Score=30.70 Aligned_cols=142 Identities=9% Similarity=0.023 Sum_probs=77.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCC--ceEEEEecCcchhhhHHH----HHHc
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL--KTLAMTTNGLTLARKLPK----LKES 185 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~--~~~~i~TNG~ll~~~~~~----l~~~ 185 (400)
.....++.++=.++++.+.+.|++.|-.. =|-..+.=.+.++.+.+. +. ..+.+..=+......++. +...
T Consensus 40 ~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~G--fp~~s~~D~e~v~~i~~~-~l~~~~~~i~al~~~~~~did~a~~a~~~~ 116 (564)
T TIGR00970 40 ALPDPMSPARKRRYFDLLVRIGFKEIEVG--FPSASQTDFDFVREIIEQ-GAIPDDVTIQVLTQSREELIERTFEALSGA 116 (564)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCCHHHHHHHHHHHHh-cCCCCCcEEEEEcCCchhhHHHHHHHhcCC
Confidence 34567999999999999999999988764 444444323444444432 11 012222211112222333 3333
Q ss_pred CCCeEEEecCCCCHHHHHHhhcCC--CHHHHHHHHHHHHHcCCC-----cEEEEEEEecC----CChhHHHHHHHHHHhC
Q 015808 186 GLTSVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYN-----PVKVNCVVMRG----FNDDEICDFVELTRDR 254 (400)
Q Consensus 186 g~~~i~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~-----~v~i~~~v~~~----~n~~el~~l~~~~~~~ 254 (400)
+...|.+.+-+.+-.....++... ..+.+.+.++.+++.+.. ...+.+.+... .+.+.+.++++.+.+.
T Consensus 117 ~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~a 196 (564)
T TIGR00970 117 KRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEV 196 (564)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHh
Confidence 334688887774222222232211 166666777777777641 11223344332 3557788888888888
Q ss_pred CC
Q 015808 255 PI 256 (400)
Q Consensus 255 gv 256 (400)
|.
T Consensus 197 g~ 198 (564)
T TIGR00970 197 WA 198 (564)
T ss_pred CC
Confidence 75
No 272
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=68.27 E-value=1.1e+02 Score=28.97 Aligned_cols=108 Identities=20% Similarity=0.171 Sum_probs=71.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-CC-CCEEEEECCCcc-chhh-HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcC
Q 015808 111 TPKPQLLSLNEILRLAYLFVT-SG-VDKIRLTGGEPT-VRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 186 (400)
Q Consensus 111 ~~~~~~~s~e~i~~ii~~~~~-~g-~~~i~~~GGEPl-l~~~-l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g 186 (400)
......++.+++..+++.+.. .. ...|.++|-=|= +.++ +.++++.+++. +. .+.+.|.|-.| ...++.+
T Consensus 105 n~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~-g~-~vilD~Sg~~L----~~~L~~~ 178 (310)
T COG1105 105 NFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQ-GA-KVILDTSGEAL----LAALEAK 178 (310)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhc-CC-eEEEECChHHH----HHHHccC
Confidence 345667899999999988877 33 455888885553 3455 68999999985 87 79999999554 4445554
Q ss_pred CCeEEEecCCCCHHHHHHhhcCC--CHHHHHHHHHHHHHcCCCcE
Q 015808 187 LTSVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNPV 229 (400)
Q Consensus 187 ~~~i~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~v 229 (400)
..-|.- +.+....+-+.. +-+.+++..+.+...|+..|
T Consensus 179 P~lIKP-----N~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~V 218 (310)
T COG1105 179 PWLIKP-----NREELEALFGRELTTLEDVIKAARELLAEGIENV 218 (310)
T ss_pred CcEEec-----CHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEE
Confidence 433322 333344444433 25688888888888888333
No 273
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=68.04 E-value=1e+02 Score=28.46 Aligned_cols=103 Identities=11% Similarity=0.157 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCcc-chhh-HHHHHHHhhhcCCCceEE-EEecCcchhhhHHHHHHc---CCC-eE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPT-VRKD-IEEACFHLSKLKGLKTLA-MTTNGLTLARKLPKLKES---GLT-SV 190 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPl-l~~~-l~~~i~~~~~~~g~~~~~-i~TNG~ll~~~~~~l~~~---g~~-~i 190 (400)
..+.+...++.+++.|. .|.+..-.-+ ..++ +.++++.+.+. |...+. ..|.|.+.++.+..+.+. .+. .+
T Consensus 107 ~~~~~~~~i~~ak~~G~-~v~~~~~~a~~~~~~~~~~~~~~~~~~-g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~ 184 (266)
T cd07944 107 EFDEALPLIKAIKEKGY-EVFFNLMAISGYSDEELLELLELVNEI-KPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDI 184 (266)
T ss_pred cHHHHHHHHHHHHHCCC-eEEEEEEeecCCCHHHHHHHHHHHHhC-CCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 46777777777777774 2333211101 2233 56666666654 543333 357777776555333321 122 15
Q ss_pred EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Q 015808 191 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 233 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 233 (400)
.|++++.+ ++.-.+.|...+.++|...+...+
T Consensus 185 ~i~~H~Hn-----------~~Gla~AN~laA~~aGa~~vd~s~ 216 (266)
T cd07944 185 KLGFHAHN-----------NLQLALANTLEAIELGVEIIDATV 216 (266)
T ss_pred eEEEEeCC-----------CccHHHHHHHHHHHcCCCEEEEec
Confidence 55555521 244555555555667763343333
No 274
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=67.90 E-value=1.1e+02 Score=29.05 Aligned_cols=65 Identities=15% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHhCCCCEEEEEC---CCccchhh---------HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEec
Q 015808 127 YLFVTSGVDKIRLTG---GEPTVRKD---------IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 194 (400)
Q Consensus 127 ~~~~~~g~~~i~~~G---GEPll~~~---------l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSl 194 (400)
+.+.+.|...|.+.- +.+++.|+ +.++++.+++..+...+++..|. +..+..+.+.|++.+ |+
T Consensus 187 ~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~---~~~~~~l~~~g~d~l--s~ 261 (340)
T TIGR01463 187 KAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFT---QPILRDIANNGCFGF--SV 261 (340)
T ss_pred HHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCc---hhhHHHHHHhCCCEE--ee
Confidence 334467877776642 33466544 34555566654222123333333 344677788888754 45
Q ss_pred CC
Q 015808 195 DT 196 (400)
Q Consensus 195 dg 196 (400)
|.
T Consensus 262 d~ 263 (340)
T TIGR01463 262 DM 263 (340)
T ss_pred cC
Confidence 54
No 275
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=67.60 E-value=1.1e+02 Score=28.76 Aligned_cols=109 Identities=21% Similarity=0.299 Sum_probs=65.1
Q ss_pred CCCHHHHHHHH-HHHHhCC-------CCEEEEECCCccchhhHHHHHH---HhhhcCCCceEEEEecCcch-hhhHHHHH
Q 015808 116 LLSLNEILRLA-YLFVTSG-------VDKIRLTGGEPTVRKDIEEACF---HLSKLKGLKTLAMTTNGLTL-ARKLPKLK 183 (400)
Q Consensus 116 ~~s~e~i~~ii-~~~~~~g-------~~~i~~~GGEPll~~~l~~~i~---~~~~~~g~~~~~i~TNG~ll-~~~~~~l~ 183 (400)
.++.+++...+ +++. .| .-.|.+.||+|-.-|.-.+.++ .+....|. .+.+.|++..+ .+.++-|.
T Consensus 109 ~~~i~~~ae~~v~ei~-~Gi~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~-Pi~tHt~~gt~g~eq~~il~ 186 (316)
T COG1735 109 LRPIEELAEFVVKEIE-EGIAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAHKETGA-PISTHTPAGTMGLEQLRILA 186 (316)
T ss_pred hCCHHHHHHHHHHHHH-hcccCCccccceeeeccCcccCCHHHHHHHHHHHHHhhhcCC-CeEEeccchhhhHHHHHHHH
Confidence 34556665543 3443 22 2258888999988766443333 33344566 78888988777 47788888
Q ss_pred HcCCC--eEEEe-cC-CCCHHHHHHh-hcCC--------------CHHHHHHHHHHHHHcCC
Q 015808 184 ESGLT--SVNIS-LD-TLVPAKFEFL-TRRK--------------GHEKVMESINAAIEVGY 226 (400)
Q Consensus 184 ~~g~~--~i~iS-ld-g~~~~~~~~i-r~~~--------------~~~~v~~~i~~l~~~g~ 226 (400)
+.|++ .|.|+ +| ..++..|.+. +..+ ..+..+..+..+.+.|+
T Consensus 187 ~egvdl~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy 248 (316)
T COG1735 187 EEGVDLRKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRIGKDKYYPDEDRIAPLLELVARGY 248 (316)
T ss_pred HcCCChhHeeEeccCCCCChHHHHHHHHhcCceEEecccCccccCcHHHhhhhHHHHHHhhH
Confidence 88876 55555 33 2233334332 2111 14666788888888777
No 276
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=66.92 E-value=1.7e+02 Score=30.59 Aligned_cols=118 Identities=16% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEe---cCcchhhhHHHHHHcCCCeEEE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTT---NGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~T---NG~ll~~~~~~l~~~g~~~i~i 192 (400)
.+.+.+.++++++.+.|+..|.|--=-=++.|. +.++++.+++..++ .+.+.| .|.-+ -....-.++|++.|..
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~-pi~~H~Hnt~Gla~-An~laAv~aGad~vD~ 228 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDL-PVQLHSHCTSGLAP-MTYLKAVEAGVDIIDT 228 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCC-eEEEEEcCCCCcHH-HHHHHHHHhCCCEEEe
Confidence 578999999999999999999985211123443 67888888765455 566665 34333 2334445789999999
Q ss_pred ecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 193 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
|+.|+.+.. +....+.++.+++. .|+ . .+.+.+.+.++.+++.+
T Consensus 229 ai~g~g~~a-----gn~~~e~vv~~L~~---~g~-~--------~~idl~~l~~~s~~~~~ 272 (592)
T PRK09282 229 AISPLAFGT-----SQPPTESMVAALKG---TPY-D--------TGLDLELLFEIAEYFRE 272 (592)
T ss_pred eccccCCCc-----CCHhHHHHHHHHHh---CCC-C--------CccCHHHHHHHHHHHHH
Confidence 999875421 22235666666543 355 2 13555655555555443
No 277
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=66.92 E-value=7.9 Score=29.90 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=34.6
Q ss_pred EEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchh--hhHHHHHHcCCC
Q 015808 137 IRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA--RKLPKLKESGLT 188 (400)
Q Consensus 137 i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~--~~~~~l~~~g~~ 188 (400)
+.+.|++|+ |.-.++++++++. |. .+.+.||....+ +...+|...|+.
T Consensus 8 vl~~g~~~i--pga~e~l~~L~~~-g~-~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 8 VLYNGNEPI--PGAVEALDALRER-GK-PVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp TSEETTEE---TTHHHHHHHHHHT-TS-EEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred EeEeCCCcC--cCHHHHHHHHHHc-CC-CEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 445678873 6678999999985 77 789999987664 445888888875
No 278
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=66.86 E-value=1.3e+02 Score=29.34 Aligned_cols=117 Identities=16% Similarity=0.275 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEC--CCccchhh-HHHHHHHhhhcCCCceEEEEec---CcchhhhHHHHHHcCCCeE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTG--GEPTVRKD-IEEACFHLSKLKGLKTLAMTTN---GLTLARKLPKLKESGLTSV 190 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~~~-l~~~i~~~~~~~g~~~~~i~TN---G~ll~~~~~~l~~~g~~~i 190 (400)
.+.+.+.++++.+.+.|+..|.|.- | .+.|. +.++++.+++..++ .+.+.+. |.-+.. ...-..+|.+.|
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~G--~~~P~~v~~lv~~l~~~~~~-~l~~H~Hnd~GlA~AN-~laAv~aGa~~v 217 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTVG--ILDPFTMYELVKELVEAVDI-PIEVHCHNDFGMATAN-ALAGIEAGAKQV 217 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCC--CCCHHHHHHHHHHHHHhcCC-eEEEEecCCcCHHHHH-HHHHHHcCCCEE
Confidence 3566666666666666666666632 2 22222 45555555543233 3444431 222222 222234567777
Q ss_pred EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 191 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
..|+.|.-+. .|....+.++.+++.. .|+ .. +.+.+.+.++.+++.+
T Consensus 218 d~tv~GlGer-----aGNa~lE~vv~~L~~~--~g~-~~--------~idl~~l~~~s~~v~~ 264 (378)
T PRK11858 218 HTTVNGLGER-----AGNAALEEVVMALKYL--YGI-DL--------GIDTERLYELSRLVSK 264 (378)
T ss_pred EEeecccccc-----ccCccHHHHHHHHHHH--hCC-CC--------CcCHHHHHHHHHHHHH
Confidence 7777776421 1222266666655432 344 11 3566666666666655
No 279
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=66.76 E-value=52 Score=31.59 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHHH-------hCCCCEEEEECC---------Cccch-------------hh-HHHHHHHhhhcCCC
Q 015808 114 PQLLSLNEILRLAYLFV-------TSGVDKIRLTGG---------EPTVR-------------KD-IEEACFHLSKLKGL 163 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~-------~~g~~~i~~~GG---------EPll~-------------~~-l~~~i~~~~~~~g~ 163 (400)
...||.++|.++++.+. +.|.+.|.+++| -|..| .. +.++++.+++.-..
T Consensus 129 p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~ 208 (337)
T PRK13523 129 PVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDG 208 (337)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46799999999988653 468899999887 46553 12 35788888775333
Q ss_pred ceEEEEec-------Ccchhh---hHHHHHHcCCCeEEEecCC
Q 015808 164 KTLAMTTN-------GLTLAR---KLPKLKESGLTSVNISLDT 196 (400)
Q Consensus 164 ~~~~i~TN-------G~ll~~---~~~~l~~~g~~~i~iSldg 196 (400)
.+.+-.| |..+++ .+..|.+.|++.|.||.-+
T Consensus 209 -~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 209 -PLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred -CeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3343333 333432 2356667899999998754
No 280
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=66.47 E-value=35 Score=28.66 Aligned_cols=84 Identities=23% Similarity=0.198 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEC-CCccchhh-HHHHHHHhhhcCCCceEEEEecC--cchhhhHHHHHHcCCCeEEE
Q 015808 118 SLNEILRLAYLFVT-SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGLKTLAMTTNG--LTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 118 s~e~i~~ii~~~~~-~g~~~i~~~G-GEPll~~~-l~~~i~~~~~~~g~~~~~i~TNG--~ll~~~~~~l~~~g~~~i~i 192 (400)
..+++.++++++.+ .+.+.|.+.| |--.+-++ +.++...... .+. .+.+.+|. ..+......+...+--.|.+
T Consensus 3 ~~~~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~-~~~-~i~~~~~~D~~~~~~~~~~~~~~~tlvi~i 80 (158)
T cd05015 3 ELERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFK-GGL-RLHFVSNVDPDDLAELLKKLDPETTLFIVI 80 (158)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhcc-CCc-eEEEEeCCCHHHHHHHHHhCCcccEEEEEE
Confidence 35677888888877 3789999998 66666555 3555554432 244 45566663 22222223232122226889
Q ss_pred ecCCCCHHHHH
Q 015808 193 SLDTLVPAKFE 203 (400)
Q Consensus 193 Sldg~~~~~~~ 203 (400)
|--|.+.|+..
T Consensus 81 SkSG~T~Et~~ 91 (158)
T cd05015 81 SKSGTTLETLA 91 (158)
T ss_pred ECCcCCHHHHH
Confidence 99997777654
No 281
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=66.20 E-value=1.3e+02 Score=29.14 Aligned_cols=116 Identities=20% Similarity=0.269 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEC--CCccchhh-HHHHHHHhhhcCCCceEEEEec---CcchhhhHHHHHHcCCCeEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTG--GEPTVRKD-IEEACFHLSKLKGLKTLAMTTN---GLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~~~-l~~~i~~~~~~~g~~~~~i~TN---G~ll~~~~~~l~~~g~~~i~ 191 (400)
+.+.+.++++.+.+.|...|.+.- | .+.|+ +.++++.+++..++ .+.+.+. |.-+.. ...-..+|.+.|.
T Consensus 140 ~~~~l~~~~~~~~~~Ga~~i~l~DT~G--~~~P~~v~~lv~~l~~~~~v-~l~~H~HNd~GlA~AN-alaA~~aGa~~vd 215 (365)
T TIGR02660 140 DPDFLVELAEVAAEAGADRFRFADTVG--ILDPFSTYELVRALRQAVDL-PLEMHAHNDLGMATAN-TLAAVRAGATHVN 215 (365)
T ss_pred CHHHHHHHHHHHHHcCcCEEEEcccCC--CCCHHHHHHHHHHHHHhcCC-eEEEEecCCCChHHHH-HHHHHHhCCCEEE
Confidence 456666666666666666666532 2 22222 45555555543233 3444331 211112 2222345666666
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
.|+.|.-+. .|....+.++.++.. ..|+ . .+.+.+.+.++.+++.+
T Consensus 216 ~tl~GiGer-----aGN~~lE~lv~~L~~--~~g~-~--------~~idl~~l~~~s~~v~~ 261 (365)
T TIGR02660 216 TTVNGLGER-----AGNAALEEVAMALKR--LLGR-D--------TGIDTSRLPALSQLVAR 261 (365)
T ss_pred EEeeccccc-----cccCCHHHHHHHHHH--hcCC-C--------CCcCHHHHHHHHHHHHH
Confidence 666665421 122225555555532 2244 1 13455556665555554
No 282
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=66.15 E-value=1.3e+02 Score=29.13 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRL 139 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~ 139 (400)
+.+.+.++++.+.+.|+..|.|
T Consensus 139 ~~~~l~~~~~~~~~~g~~~i~l 160 (363)
T TIGR02090 139 DIDFLIKVFKRAEEAGADRINI 160 (363)
T ss_pred CHHHHHHHHHHHHhCCCCEEEE
Confidence 4555555555555555555555
No 283
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=65.92 E-value=1e+02 Score=27.87 Aligned_cols=145 Identities=15% Similarity=0.213 Sum_probs=80.0
Q ss_pred CCCCCCHHHHHHHHH-HHHhCCC--CEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEe--cCcchhhhHHHHHHcCC
Q 015808 113 KPQLLSLNEILRLAY-LFVTSGV--DKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTT--NGLTLARKLPKLKESGL 187 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~-~~~~~g~--~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~T--NG~ll~~~~~~l~~~g~ 187 (400)
.-..++.|.+++-++ .+.++|. .+=.+-.-+.++....-+++--.-+..-+....+.. -||++...-......|-
T Consensus 37 gI~~it~E~ikkNiefRI~dfGm~T~~R~l~~~~~fv~FG~SEi~~t~l~~g~iDaaVivcDgaGTVI~~nP~lVQGigG 116 (259)
T TIGR03275 37 GIEEITPEAIRKNIEFRIDDFGMFTKNRRLESSDRFVGFGASEILMTALKSGFIDAAVIVCDGAGTVITTNPALVQGLGG 116 (259)
T ss_pred CccccCHHHHHHHHHHhhhhccCCCCCceEeccCceecccHHHHHHHHHhcCCcceEEEEecCcCeEEeCCHHHHhhccc
Confidence 456799999999886 4666773 344455566666666667666655532221122222 34444322111111111
Q ss_pred CeEEEecC-CCCHHHHHHhhcCCC--HH------HHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeE
Q 015808 188 TSVNISLD-TLVPAKFEFLTRRKG--HE------KVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 188 ~~i~iSld-g~~~~~~~~ir~~~~--~~------~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
+++==++ .+-|+..+++...++ ++ +-++.++++.+.|++++.+... +.++..++-++-.+.|+++
T Consensus 117 -R~SGLv~TtPIpevi~~Ie~~gGiVLd~~tA~IDq~~Gv~~Aie~Gyk~IaVTv~-----~~~~a~~iRe~e~~~~~~~ 190 (259)
T TIGR03275 117 -RISGLIETSPIPEVIEKIEDEGGIVLDPDTATIDQIKGVEKAIELGYKKIAVTVA-----DAEDAKAIRELESESGIDI 190 (259)
T ss_pred -eeeeeeeccccHHHHHHHHhcCCEEeCCccccccHHHHHHHHHHcCCceEEEEec-----CHHHHHHHHHhccccCCcE
Confidence 2221122 234778888776553 32 4577889999999966655433 3455666666665667765
Q ss_pred EEEee
Q 015808 259 RFIEF 263 (400)
Q Consensus 259 ~~~~~ 263 (400)
..+..
T Consensus 191 ~if~V 195 (259)
T TIGR03275 191 IIFAV 195 (259)
T ss_pred EEEEE
Confidence 44433
No 284
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=65.91 E-value=1.1e+02 Score=28.20 Aligned_cols=113 Identities=16% Similarity=0.200 Sum_probs=77.1
Q ss_pred cEEEEEcCcccCC------------CCCCCCCCCCCCCCC------CCCCCCHHHHHHHHHHHHhC--------CCCEEE
Q 015808 85 TYLRISLTERCNL------------RCHYCMPPEGVDLTP------KPQLLSLNEILRLAYLFVTS--------GVDKIR 138 (400)
Q Consensus 85 ~~l~i~iT~~CNl------------~C~yC~~~~~~~~~~------~~~~~s~e~i~~ii~~~~~~--------g~~~i~ 138 (400)
..+++.++.++|. .|.-|.......... ....++.+++.+.++.+.+. ++..-.
T Consensus 84 ~~v~v~l~~~~~~~~~~~r~~~~~s~CG~cg~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~q~~~~~TG~~H~Aa 163 (266)
T COG1526 84 NEVQVELSKRANPLKARRRALAGRSGCGVCGRESLEQADPKLPPLPSQITFDAEDIVAALKALEKAQPLYRKTGGVHAAA 163 (266)
T ss_pred eEEEEEEcCCcCchhhhhhhhccCCCccCcchhhhhcccccccCCccccccCHHHHHHHHHHHHHhhHHHHhhCcEeeEE
Confidence 3466778888883 599998654332211 12347899999988877553 344444
Q ss_pred EEC--CCccch-------hhHHHHHHHhhhcC-CCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCC
Q 015808 139 LTG--GEPTVR-------KDIEEACFHLSKLK-GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLV 198 (400)
Q Consensus 139 ~~G--GEPll~-------~~l~~~i~~~~~~~-g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~ 198 (400)
|+. |+.++. .-+.+++-++.... ......+.|.|-.-.|.+.+....|+ -+.+|+-++.
T Consensus 164 l~~~~g~l~~~~EDVGRHNAvDKliG~~~~~G~~~~~~vl~tSGR~S~EmV~Kaa~~Gi-pil~S~SAPT 232 (266)
T COG1526 164 LFDPDGELLLVREDVGRHNAVDKLIGRALLEGIPLSGKVLVTSGRASSEMVQKAAMAGI-PILASVSAPT 232 (266)
T ss_pred EEcCCCCEEEEEEeccchhHHHHHHHHHHHCCCCcCCeEEEEcCCccHHHHHHHHHhCC-cEEEEcccch
Confidence 443 688873 23778888877642 22356678889888888899999999 6889988863
No 285
>PRK12999 pyruvate carboxylase; Reviewed
Probab=65.01 E-value=1.6e+02 Score=33.52 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEecCcc-h-hhhHHHHHHcCCCeEE
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLT-L-ARKLPKLKESGLTSVN 191 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~TNG~l-l-~~~~~~l~~~g~~~i~ 191 (400)
...+.+-+.++++++.+.|...|.|----=++.|. +.++++.+++..++ .+.+.|.-+. + .-....-.++|++.|.
T Consensus 686 ~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~i-pi~~H~Hnt~Gla~an~laA~~aGad~vD 764 (1146)
T PRK12999 686 AKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDL-PIHLHTHDTSGNGLATYLAAAEAGVDIVD 764 (1146)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCC-eEEEEeCCCCchHHHHHHHHHHhCCCEEE
Confidence 34789999999999999999999985311134444 67888888775566 6777663221 2 2334445578999999
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
.++.|...- .|....+.++.+++ ..|+ .. +.+.+.+.++.+++.+
T Consensus 765 ~av~glg~~-----tgn~~le~vv~~L~---~~~~-~t--------~idl~~l~~~s~~~~~ 809 (1146)
T PRK12999 765 VAVASMSGL-----TSQPSLNSIVAALE---GTER-DT--------GLDLDAIRKLSPYWEA 809 (1146)
T ss_pred ecchhhcCC-----cCCHHHHHHHHHHH---hcCC-CC--------CcCHHHHHHHHHHHHH
Confidence 999997431 22223666666665 3455 21 3556666555555543
No 286
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=64.96 E-value=55 Score=29.11 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCccc-------------hhh-HHHHHHHhhhcCCCceEEEEecCcc-----hhhh
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPTV-------------RKD-IEEACFHLSKLKGLKTLAMTTNGLT-----LARK 178 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPll-------------~~~-l~~~i~~~~~~~g~~~~~i~TNG~l-----l~~~ 178 (400)
+.+++.+.++.+.+.|...|.+.+|-|.. +++ +.++++.+++.-++ .+.+-.+... ..+.
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~-~v~vk~r~~~~~~~~~~~~ 143 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPI-PVTVKIRLGWDDEEETLEL 143 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCC-CEEEEEeeccCCchHHHHH
Confidence 58889999988888899999998766643 455 47888888865453 4555444321 1233
Q ss_pred HHHHHHcCCCeEEEe
Q 015808 179 LPKLKESGLTSVNIS 193 (400)
Q Consensus 179 ~~~l~~~g~~~i~iS 193 (400)
+..+.+.|++.|.++
T Consensus 144 ~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 144 AKALEDAGASALTVH 158 (231)
T ss_pred HHHHHHhCCCEEEEC
Confidence 466777889888775
No 287
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=64.92 E-value=1.6e+02 Score=29.67 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEEEEec---CcchhhhHHHHHHcCCCeEEE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTN---GLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~i~TN---G~ll~~~~~~l~~~g~~~i~i 192 (400)
-+.+-+.++++++.+.|+..|.|----=++.|. +.++++.+++..++ .+.+.+. |.-+ -....-.++|++.|..
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~GlA~-An~laAieAGad~vD~ 237 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQ-MTYLAAVEAGADRIDT 237 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCCCccHH-HHHHHHHHcCCCEEEe
Confidence 367778888888888898888885311134444 67777777765455 5666653 3222 3334445778999999
Q ss_pred ecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 193 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
|+.++.+. .+....+.++..++ ..|+ .+ |.+.+.+.++.+++++
T Consensus 238 ai~g~g~g-----agN~~tE~lv~~L~---~~g~-~t--------giDl~~L~~~a~~~~~ 281 (468)
T PRK12581 238 ALSPFSEG-----TSQPATESMYLALK---EAGY-DI--------TLDETLLEQAANHLRQ 281 (468)
T ss_pred eccccCCC-----cCChhHHHHHHHHH---hcCC-CC--------CcCHHHHHHHHHHHHH
Confidence 99886432 12222566665554 3465 22 3455555555554443
No 288
>PLN02645 phosphoglycolate phosphatase
Probab=63.84 E-value=20 Score=33.92 Aligned_cols=70 Identities=26% Similarity=0.243 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHHHh--CCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcch-h-hhHHHHHHcCC
Q 015808 114 PQLLSLNEILRLAYLFVT--SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-A-RKLPKLKESGL 187 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~--~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll-~-~~~~~l~~~g~ 187 (400)
...++.+++.++++.++- ..+..+.+.|++|+ +...+.++.+++. |+ .+.+.||...- . +.+++|.+.|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~D~DGtl~~~~~~~--~ga~e~l~~lr~~-g~-~~~~~TN~~~~~~~~~~~~l~~lGi 86 (311)
T PLN02645 13 AQLLTLENADELIDSVETFIFDCDGVIWKGDKLI--EGVPETLDMLRSM-GK-KLVFVTNNSTKSRAQYGKKFESLGL 86 (311)
T ss_pred cccCCHHHHHHHHHhCCEEEEeCcCCeEeCCccC--cCHHHHHHHHHHC-CC-EEEEEeCCCCCCHHHHHHHHHHCCC
Confidence 455788888888875432 23556777888865 7779999999985 88 78888986543 2 34477777765
No 289
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=63.77 E-value=1.2e+02 Score=27.91 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCCccch-----------hhHHHHHHHhhhcC--CCceEEEEecC------cchh
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-----------KDIEEACFHLSKLK--GLKTLAMTTNG------LTLA 176 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~-----------~~l~~~i~~~~~~~--g~~~~~i~TNG------~ll~ 176 (400)
..+..++...+..+.+.|+.+|.+.+|+|--. .+-.++++.++... ++ .+.+.+.. ....
T Consensus 69 ~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~-~igva~yPe~hp~~~~~~ 147 (274)
T cd00537 69 DRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGF-SIGVAAYPEGHPEAPSLE 147 (274)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCC-ccccccCCCcCCCCCCHH
Confidence 34668999999999999999999988776532 12467777777542 22 23332221 1122
Q ss_pred hhHHHHH---HcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHH
Q 015808 177 RKLPKLK---ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 251 (400)
Q Consensus 177 ~~~~~l~---~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~ 251 (400)
..+..|. ++|.+ .-|+-=.++. +.+.+.++.+++.|+ .+-|..-+++=.+...+..+.+.+
T Consensus 148 ~~~~~L~~Ki~aGA~-f~iTQ~~fd~------------~~~~~~~~~~~~~gi-~vPIi~GI~p~~s~~~l~~~~~~~ 211 (274)
T cd00537 148 EDIKRLKRKVDAGAD-FIITQLFFDN------------DAFLRFVDRCRAAGI-TVPIIPGIMPLTSYKQAKRFAKLC 211 (274)
T ss_pred HHHHHHHHHHHCCCC-EEeecccccH------------HHHHHHHHHHHHcCC-CCCEEeeccccCCHHHHHHHHHhh
Confidence 2333333 34553 3333333332 344555566777776 444444444423555555554444
No 290
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=63.33 E-value=58 Score=30.99 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCccc----hhh-HHHHHHHhhhcCCCceEEEEecCcchhh------hHHHHHHcC
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPTV----RKD-IEEACFHLSKLKGLKTLAMTTNGLTLAR------KLPKLKESG 186 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPll----~~~-l~~~i~~~~~~~g~~~~~i~TNG~ll~~------~~~~l~~~g 186 (400)
..+.-.+.|+.+.+.|...|.-+=+.|.- ..+ +.++++++++. |+ .+.+.-|+..+++ .+..+.+.|
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Ankl-g~-~vivDvnPsil~~l~~S~~~l~~f~e~G 91 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKL-GL-RVIVDVNPSILKELNISLDNLSRFQELG 91 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhc-Cc-EEEEEcCHHHHhhcCCChHHHHHHHHhh
Confidence 34566778888889996655443244333 223 78999999985 88 7999999998754 467777778
Q ss_pred CCeEEEecC
Q 015808 187 LTSVNISLD 195 (400)
Q Consensus 187 ~~~i~iSld 195 (400)
++.|.+..-
T Consensus 92 ~~glRlD~g 100 (360)
T COG3589 92 VDGLRLDYG 100 (360)
T ss_pred hhheeeccc
Confidence 777666543
No 291
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=63.25 E-value=33 Score=26.06 Aligned_cols=72 Identities=24% Similarity=0.266 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEEECCCccchhhHHHHHHHhhhcCCCc-e-EEEEecCcchhhhHHHHHHcCC
Q 015808 115 QLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLK-T-LAMTTNGLTLARKLPKLKESGL 187 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~-~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~-~-~~i~TNG~ll~~~~~~l~~~g~ 187 (400)
..++.+++.+++..++- ..-..|.++||++.+.+++.... .......+. - -.++|.|.-..++++.+.+.|+
T Consensus 18 ~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~-l~aGan~~~~G~~~lt~~g~~~~~d~~~i~~~g~ 92 (94)
T smart00876 18 PPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALC-FSAGANSIFGGDKYLTTSGPRSADDVAMLEKLGL 92 (94)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHh-hhccCceeeeCCccccCCCcCcHHHHHHHHHcCC
Confidence 45899999998876543 23457999999998888754331 111111110 1 1567788777666666666554
No 292
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=62.56 E-value=86 Score=27.99 Aligned_cols=100 Identities=17% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCccc------hhhHHHHHHHhhhcCCCceEEEEecCcch------hhhHHHH
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV------RKDIEEACFHLSKLKGLKTLAMTTNGLTL------ARKLPKL 182 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll------~~~l~~~i~~~~~~~g~~~~~i~TNG~ll------~~~~~~l 182 (400)
..++.|++++.++-+++.+ --.+.|| +| ...+.++++++++. |+..+.| +||++. -+.+++.
T Consensus 55 ~Li~kd~V~ekid~y~e~~--i~v~pGG--tlfe~a~~~~kvdeyl~e~~~l-Gfe~iEI-S~G~i~m~~eek~~lIe~a 128 (258)
T COG1809 55 SLIDKDQVKEKIDMYKEND--IYVFPGG--TLFEIAYSQDKVDEYLNEAKEL-GFEAIEI-SNGTIPMSTEEKCRLIERA 128 (258)
T ss_pred ccccHHHHHHHHHHHHHcC--ceecCCc--eEEEeehhcccHHHHHHHHHHc-CccEEEe-cCCeeecchHHHHHHHHHH
Q ss_pred HHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q 015808 183 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG 225 (400)
Q Consensus 183 ~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g 225 (400)
.+.|+ .+---+-.-+++....+.. +..++-|....++|
T Consensus 129 ~d~Gf-~vlsEvGkk~~e~~~~l~~----~d~~k~i~~dvdaG 166 (258)
T COG1809 129 VDEGF-MVLSEVGKKDPESDSALSP----DDRVKLINDDVDAG 166 (258)
T ss_pred Hhccc-EEehhhcccCcchhhhcCh----HHHHHHHHHHHHcc
No 293
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=62.42 E-value=61 Score=30.99 Aligned_cols=83 Identities=24% Similarity=0.305 Sum_probs=53.3
Q ss_pred CCCCCHHHHHHHHHHHH-------hCCCCEEEEECCC---------ccchh-------------h-HHHHHHHhhhcCC-
Q 015808 114 PQLLSLNEILRLAYLFV-------TSGVDKIRLTGGE---------PTVRK-------------D-IEEACFHLSKLKG- 162 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~-------~~g~~~i~~~GGE---------Pll~~-------------~-l~~~i~~~~~~~g- 162 (400)
.+.|+.++|..+++.+. +.|.+.|.+.+|. |..+. + +.++++.+++.-|
T Consensus 141 p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~ 220 (336)
T cd02932 141 PRELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPE 220 (336)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 46799999999887653 4688889888754 54432 2 3688888887543
Q ss_pred -CceEEEEec-------Ccchhh---hHHHHHHcCCCeEEEecCCC
Q 015808 163 -LKTLAMTTN-------GLTLAR---KLPKLKESGLTSVNISLDTL 197 (400)
Q Consensus 163 -~~~~~i~TN-------G~ll~~---~~~~l~~~g~~~i~iSldg~ 197 (400)
+ .+.+--| |..+++ .+..|.+.|++.|.||.-+.
T Consensus 221 d~-~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~ 265 (336)
T cd02932 221 DK-PLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGN 265 (336)
T ss_pred Cc-eEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 3 3444333 333332 23566677899999986543
No 294
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=62.21 E-value=51 Score=31.81 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=75.2
Q ss_pred CCHHHHHHHHH-HHHhCCCCEEEEE---C--CCccc---hhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHc-C
Q 015808 117 LSLNEILRLAY-LFVTSGVDKIRLT---G--GEPTV---RKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKES-G 186 (400)
Q Consensus 117 ~s~e~i~~ii~-~~~~~g~~~i~~~---G--GEPll---~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~-g 186 (400)
-+.++++++++ ++.+++++.+.++ | +|-+- .+...++++.+++...|+.+.++|.|+ ++.+.+++.+ .
T Consensus 90 ~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs--~e~~~~iv~a~~ 167 (391)
T COG1453 90 KDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGS--TEVFKEIVDAYP 167 (391)
T ss_pred cCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCC--HHHHHHHHhcCC
Confidence 46888999886 4666887776654 4 33322 234689999999876677889999984 4666666654 4
Q ss_pred CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecC
Q 015808 187 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRG 238 (400)
Q Consensus 187 ~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~ 238 (400)
.+.+++-..-.+.+. ....+.|+.+.+.|. .|.|.-.+-.|
T Consensus 168 ~dfvqlq~ny~d~~n----------~~~~~~l~~A~~~~~-gI~IMeP~~gG 208 (391)
T COG1453 168 WDFVQLQYNYIDQKN----------QAGTEGLKYAASKGL-GIFIMEPLDGG 208 (391)
T ss_pred cceEEeeeeeeccch----------hcccHHHHHHHhCCC-cEEEEeeCCCC
Confidence 678888877654321 223688999999998 77777666554
No 295
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=62.10 E-value=52 Score=26.82 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeE
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSV 190 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i 190 (400)
...+.+++.+.+ .+.+..-|.+++=....-..+.++++.+++. +...+.+.--|...++....|.+.|++.+
T Consensus 38 ~~~s~e~~v~aa---~e~~adii~iSsl~~~~~~~~~~~~~~L~~~-g~~~i~vivGG~~~~~~~~~l~~~Gvd~~ 109 (132)
T TIGR00640 38 LFQTPEEIARQA---VEADVHVVGVSSLAGGHLTLVPALRKELDKL-GRPDILVVVGGVIPPQDFDELKEMGVAEI 109 (132)
T ss_pred CCCCHHHHHHHH---HHcCCCEEEEcCchhhhHHHHHHHHHHHHhc-CCCCCEEEEeCCCChHhHHHHHHCCCCEE
Confidence 345666554433 4566777777763322223356666666654 33233445556566666777888887543
No 296
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=61.43 E-value=1.2e+02 Score=27.11 Aligned_cols=128 Identities=11% Similarity=0.113 Sum_probs=81.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEe---cCcchh----hhHHHHHHcC
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTT---NGLTLA----RKLPKLKESG 186 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~T---NG~ll~----~~~~~l~~~g 186 (400)
....+.+++.+++++..++++..|++. |.+..+.+..-+..++ .+.-.. -|.... ...+...+.|
T Consensus 16 ~p~~t~~~i~~~~~~A~~~~~~avcv~-------p~~v~~a~~~l~~~~v-~v~tVigFP~G~~~~~~K~~e~~~Ai~~G 87 (221)
T PRK00507 16 KPEATEEDIDKLCDEAKEYGFASVCVN-------PSYVKLAAELLKGSDV-KVCTVIGFPLGANTTAVKAFEAKDAIANG 87 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEEC-------HHHHHHHHHHhCCCCC-eEEEEecccCCCChHHHHHHHHHHHHHcC
Confidence 456889999999999999998888764 5555555443332344 333222 233332 2345666778
Q ss_pred CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEe-cCCChhHHHHHHHHHHhCCCe
Q 015808 187 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 187 ~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~-~~~n~~el~~l~~~~~~~gv~ 257 (400)
.+.|.+-++-... ..+.++.+.+-|..+.+.-. +..+.+.+- ...+.+++..+.+.+.+.|++
T Consensus 88 A~EiD~Vin~~~~-------~~g~~~~v~~ei~~v~~~~~-~~~lKvIlEt~~L~~e~i~~a~~~~~~agad 151 (221)
T PRK00507 88 ADEIDMVINIGAL-------KSGDWDAVEADIRAVVEAAG-GAVLKVIIETCLLTDEEKVKACEIAKEAGAD 151 (221)
T ss_pred CceEeeeccHHHh-------cCCCHHHHHHHHHHHHHhcC-CceEEEEeecCcCCHHHHHHHHHHHHHhCCC
Confidence 8887777654211 12348888888888888522 333444332 236778999999999998887
No 297
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=61.24 E-value=1.1e+02 Score=26.72 Aligned_cols=128 Identities=18% Similarity=0.198 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHH-hhhcCCCceEEEEec---Ccch-h---hhHHHHHHcC
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFH-LSKLKGLKTLAMTTN---GLTL-A---RKLPKLKESG 186 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~-~~~~~g~~~~~i~TN---G~ll-~---~~~~~l~~~g 186 (400)
...+.+++.+.+++..+.++..|.++ |.+.+.+.. +.. .++ .+....+ |... + ..+++..+.|
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~-------p~~v~~~~~~l~~-~~~-~v~~~~~fp~g~~~~~~k~~eve~A~~~G 82 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN-------PCFVPLAREALKG-SGV-KVCTVIGFPLGATTTEVKVAEAREAIADG 82 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc-------HHHHHHHHHHcCC-CCc-EEEEEEecCCCCCcHHHHHHHHHHHHHcC
Confidence 45689999999999999888888865 555444333 333 244 3333322 2111 1 2356677789
Q ss_pred CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEE
Q 015808 187 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRF 260 (400)
Q Consensus 187 ~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~ 260 (400)
.+.|.+.++-.. + ..+.++.+++.|..+.+. |. ++.+.+-... .+.+++....+.+.+.|.++.-
T Consensus 83 Adevdvv~~~g~------~-~~~~~~~~~~ei~~v~~~~~g~-~lkvI~e~~~-l~~~~i~~a~ria~e~GaD~IK 149 (203)
T cd00959 83 ADEIDMVINIGA------L-KSGDYEAVYEEIAAVVEACGGA-PLKVILETGL-LTDEEIIKACEIAIEAGADFIK 149 (203)
T ss_pred CCEEEEeecHHH------H-hCCCHHHHHHHHHHHHHhcCCC-eEEEEEecCC-CCHHHHHHHHHHHHHhCCCEEE
Confidence 999888877521 1 113467777777777776 55 5555322222 4668899999999999987533
No 298
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=61.18 E-value=1.6e+02 Score=28.30 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=53.9
Q ss_pred CCCCCCHHHHHHHHHHHH-------hCCCCEEEEECCC---------ccchh-------------h-HHHHHHHhhhcCC
Q 015808 113 KPQLLSLNEILRLAYLFV-------TSGVDKIRLTGGE---------PTVRK-------------D-IEEACFHLSKLKG 162 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~-------~~g~~~i~~~GGE---------Pll~~-------------~-l~~~i~~~~~~~g 162 (400)
..+.||.++|.++++.+. +.|.+.|.+++|. |..++ . +.++++.+++.-|
T Consensus 138 ~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg 217 (338)
T cd02933 138 TPRALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIG 217 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhC
Confidence 346799999999888653 4689999998877 65531 2 3588888886533
Q ss_pred CceEEEEecC----------cchhh---hHHHHHHcCCCeEEEecCC
Q 015808 163 LKTLAMTTNG----------LTLAR---KLPKLKESGLTSVNISLDT 196 (400)
Q Consensus 163 ~~~~~i~TNG----------~ll~~---~~~~l~~~g~~~i~iSldg 196 (400)
...+.+-.|+ ...++ .++.|.+.|++.|.||.-.
T Consensus 218 ~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~ 264 (338)
T cd02933 218 ADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR 264 (338)
T ss_pred CCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3123333332 12222 2356667789999997644
No 299
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=61.17 E-value=1.6e+02 Score=28.40 Aligned_cols=125 Identities=13% Similarity=0.143 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhCCCCE-EEEE--CCCccc---hhh-HHHHHHHhhhcCCCceEEE-EecCcchhhhHHHHHHc---CC
Q 015808 119 LNEILRLAYLFVTSGVDK-IRLT--GGEPTV---RKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLPKLKES---GL 187 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~-i~~~--GGEPll---~~~-l~~~i~~~~~~~g~~~~~i-~TNG~ll~~~~~~l~~~---g~ 187 (400)
.+.+.++++..++.|... +.|+ =|-|.- .++ +.++++.+.+. |...+.| .|.|...+..+..+.+. .+
T Consensus 161 l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~-Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 161 LVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM-GCYEISLGDTIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc-CCCEEEecCCcCCcCHHHHHHHHHHHHHhC
Confidence 344445666666777432 1221 132222 344 56777777764 6544443 57887776554333322 12
Q ss_pred CeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEec-C-------C-ChhHHHHHHHHHHhCCCe
Q 015808 188 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-G-------F-NDDEICDFVELTRDRPIN 257 (400)
Q Consensus 188 ~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~-~-------~-n~~el~~l~~~~~~~gv~ 257 (400)
..+.|.+... .++.-.+.|.-.+.++|... +.+++.- | - -.--+++++-++..+|++
T Consensus 240 ~~~~i~~H~H-----------nd~GlA~AN~lAA~~aGa~~--vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~ 305 (347)
T PLN02746 240 PVDKLAVHFH-----------DTYGQALANILVSLQMGIST--VDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVS 305 (347)
T ss_pred CCCeEEEEEC-----------CCCChHHHHHHHHHHhCCCE--EEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCC
Confidence 2233444442 12456667777777777732 3444321 1 0 112355666666666653
No 300
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=60.54 E-value=1.9e+02 Score=29.03 Aligned_cols=170 Identities=17% Similarity=0.211 Sum_probs=94.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCc----chhhhHHHHHHcCC
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL----TLARKLPKLKESGL 187 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~----ll~~~~~~l~~~g~ 187 (400)
.....++.++-..+.+++...|+..|-+ |+|-...+=.+.++++.+..|. .+.|.|-.. ++...++.+..+..
T Consensus 71 s~ga~~~~~qK~eiar~L~~~gvd~IEv--~fP~aSe~~~~~~~~i~k~~g~-~~~I~~l~rc~~~di~~tvEAl~~aKr 147 (560)
T KOG2367|consen 71 SPGAFLTTEQKLEIARQLAKLGVDIIEV--GFPVASEQDFEDCKTIAKTLGY-VPVICTLIRCHMDDIERTVEALKYAKR 147 (560)
T ss_pred CCCCcCCcHHHHHHHHHHHhcCcCEEEe--cCcccCcchHHHHHHHHHhCCC-CceEEEeeccchHHHHHHHHHhhccCc
Confidence 3567799999999999999999776655 5676665544556666553355 455554322 22233444544333
Q ss_pred CeEEEecCCCCHHHHHHhhcCCC----HHHHHHHHHHHHHcCCCcEEEEEE-EecCCChhHHHHHHHHHHhCCCeEEEEe
Q 015808 188 TSVNISLDTLVPAKFEFLTRRKG----HEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPINIRFIE 262 (400)
Q Consensus 188 ~~i~iSldg~~~~~~~~ir~~~~----~~~v~~~i~~l~~~g~~~v~i~~~-v~~~~n~~el~~l~~~~~~~gv~~~~~~ 262 (400)
..|.+-+-+ .+.|.++.-+++ .+.+++.++..+.+|.-.+....- ..+ -..+.+.++++...+.|+.. +.
T Consensus 148 ~~Vh~~~aT--Sd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~r-se~~fl~eI~~aV~Kag~~t--vn 222 (560)
T KOG2367|consen 148 PRVHVFIAT--SDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGR-SELEFLLEILGAVIKAGVTT--VN 222 (560)
T ss_pred ceEEEEecc--cHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECcccccc-CcHHHHHHHHHHHHHhCCcc--cc
Confidence 345555444 456776665555 677788888888888413333221 111 12345666777666666642 11
Q ss_pred eecCCCCCCcccCCCCHHHHHHHHHHhCCCc
Q 015808 263 FMPFDGNVWNVKKLVPYAEMLDTVVKKFPGL 293 (400)
Q Consensus 263 ~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~l 293 (400)
+ |- + -.-..+-.+.++++.+....++.
T Consensus 223 i-pd--T-Vgia~P~~y~dLI~y~~tn~~~~ 249 (560)
T KOG2367|consen 223 I-PD--T-VGIATPNEYGDLIEYLKTNTPGR 249 (560)
T ss_pred C-cc--e-ecccChHHHHHHHHHHHccCCCc
Confidence 1 10 0 00112234566666666655443
No 301
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=59.72 E-value=1.6e+02 Score=27.77 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCCCEEEEECCCccchh----------hHHHHHHHhhhcCCC-ceEEEEecCcchhhhHHHHHHcCCCeE
Q 015808 122 ILRLAYLFVTSGVDKIRLTGGEPTVRK----------DIEEACFHLSKLKGL-KTLAMTTNGLTLARKLPKLKESGLTSV 190 (400)
Q Consensus 122 i~~ii~~~~~~g~~~i~~~GGEPll~~----------~l~~~i~~~~~~~g~-~~~~i~TNG~ll~~~~~~l~~~g~~~i 190 (400)
+...++.+.+.|+..|.| .||.+.. .+.++++.+....+. ..+++.++ ..+..+.+.+++.+
T Consensus 153 ~~~~~~~l~~~G~~~iqi--dEP~l~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~lHic~~-----~~~~~l~~~~vd~l 225 (321)
T cd03310 153 LREQVKELKNRGIVVVQI--DEPSLGAVGAGAFEDLEIVDAALEEVSLKSGGDVEVHLCAP-----LDYEALLELGVDVI 225 (321)
T ss_pred HHHHHHHHHhcCCcEEEe--CCCccccccccccchHHHHHHHHHHHhhccCCceEEEECCC-----CCHHHHHhCCCCEE
Confidence 334455666778766666 5665542 234555555431122 14555555 44677888888877
Q ss_pred EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcC-CCcEEEEEEEecC----CChh----HHHHHHHHHHhCC
Q 015808 191 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG-YNPVKVNCVVMRG----FNDD----EICDFVELTRDRP 255 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g-~~~v~i~~~v~~~----~n~~----el~~l~~~~~~~g 255 (400)
++.+....+ ...+++..+.+.| . ...+...++.+ .|.. .+.+..+.+...+
T Consensus 226 ~~D~~~~~~-------------~~~~~l~~~~~~g~~-~~~lg~gvid~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (321)
T cd03310 226 GFDAAALPS-------------KYLEDLKKLLRIGVR-TLILGLVVTDNEAKGRNAWKEIERLEKLVRRLEEPG 285 (321)
T ss_pred EEecccCcc-------------cchhHHHHHHhcCCc-eEEEEeeecCCcccCCCHHHHHHHHHHHHHHhccch
Confidence 666544211 2344666676766 4 44555555555 4553 3455555554443
No 302
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=59.46 E-value=1.1e+02 Score=28.12 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=58.6
Q ss_pred EEEEecCcchh----hhHHHHHHcCCCeEEEecCCCC---------HHHHHHhhcCCCHHHHHHHHHHHHHc--CCCcEE
Q 015808 166 LAMTTNGLTLA----RKLPKLKESGLTSVNISLDTLV---------PAKFEFLTRRKGHEKVMESINAAIEV--GYNPVK 230 (400)
Q Consensus 166 ~~i~TNG~ll~----~~~~~l~~~g~~~i~iSldg~~---------~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~ 230 (400)
+...|-|.--. +.+..|.+.|.+.|.+.+--.+ ....+.+..+-+.+.+++.++.+++. .+ ++.
T Consensus 13 i~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~-plv 91 (256)
T TIGR00262 13 IPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI-PIG 91 (256)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CEE
Confidence 45557675331 3346667778888777763322 23344556666689999999999865 44 443
Q ss_pred EEEEEecCCChhHHHHHHHHHHhCCCeEEEEeeec
Q 015808 231 VNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMP 265 (400)
Q Consensus 231 i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p 265 (400)
+.+...+ .-.--++++++.+.+.|++-..+...|
T Consensus 92 ~m~Y~Np-i~~~G~e~f~~~~~~aGvdgviipDlp 125 (256)
T TIGR00262 92 LLTYYNL-IFRKGVEEFYAKCKEVGVDGVLVADLP 125 (256)
T ss_pred EEEeccH-HhhhhHHHHHHHHHHcCCCEEEECCCC
Confidence 2222222 111246788888888888655555444
No 303
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=59.19 E-value=1.2e+02 Score=27.01 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=10.2
Q ss_pred HHHHHHHhhhcCCCceEEEE-ecCcchh
Q 015808 150 IEEACFHLSKLKGLKTLAMT-TNGLTLA 176 (400)
Q Consensus 150 l~~~i~~~~~~~g~~~~~i~-TNG~ll~ 176 (400)
+.++++.+.+. |...+.|. |.|...+
T Consensus 139 ~~~~~~~~~~~-g~~~i~l~Dt~G~~~P 165 (237)
T PF00682_consen 139 LLELAEALAEA-GADIIYLADTVGIMTP 165 (237)
T ss_dssp HHHHHHHHHHH-T-SEEEEEETTS-S-H
T ss_pred HHHHHHHHHHc-CCeEEEeeCccCCcCH
Confidence 44555555443 33333332 5555544
No 304
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=58.12 E-value=1.7e+02 Score=27.79 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=32.0
Q ss_pred HHhCCCCEEEEEC---CCccchhh---------HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCC
Q 015808 129 FVTSGVDKIRLTG---GEPTVRKD---------IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDT 196 (400)
Q Consensus 129 ~~~~g~~~i~~~G---GEPll~~~---------l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg 196 (400)
+.+.|+..|.+.- +-+++.|+ +.++++.++.. ...+++..|. ...+..+.+.|.+.+ |+|.
T Consensus 189 ~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~--~~ilH~cG~~---~~~l~~~~~~g~d~~--~~d~ 261 (339)
T PRK06252 189 QLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL--PTILHICGDL---TSILEEMADCGFDGI--SIDE 261 (339)
T ss_pred HHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC--CcEEEECCCc---hHHHHHHHhcCCCee--ccCC
Confidence 3456888777752 44566544 23444454432 2123333332 345677778887654 4554
No 305
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=57.76 E-value=1.4e+02 Score=27.98 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCcc--ch--h---hHHHHHHHhhhc
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPT--VR--K---DIEEACFHLSKL 160 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl--l~--~---~l~~~i~~~~~~ 160 (400)
...+..++.+++..+.+.|+.+|...+|+|- .. + +-.++++.++..
T Consensus 87 ~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~ 139 (291)
T COG0685 87 RDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKM 139 (291)
T ss_pred cCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHh
Confidence 3458999999999999999999999999983 22 2 235777777743
No 306
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=57.39 E-value=1.1e+02 Score=28.14 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEC-CCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEec
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLTG-GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 194 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~G-GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSl 194 (400)
.++.+++.++++.+.+.+ .|.+.| |-- ..--..+...+... |. .+...++.......+..+.+..+ .|.||.
T Consensus 112 ~~~~~~l~~~~~~i~~a~--~I~i~G~G~s--~~~A~~~~~~l~~~-g~-~~~~~~d~~~~~~~~~~~~~~Dv-~I~iS~ 184 (278)
T PRK11557 112 VNSEEKLHECVTMLRSAR--RIILTGIGAS--GLVAQNFAWKLMKI-GI-NAVAERDMHALLATVQALSPDDL-LLAISY 184 (278)
T ss_pred hcCHHHHHHHHHHHhcCC--eEEEEecChh--HHHHHHHHHHHhhC-CC-eEEEcCChHHHHHHHHhCCCCCE-EEEEcC
Confidence 356777777777776654 788888 521 11112333334442 55 34333333222222222222222 677887
Q ss_pred CCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 195 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 195 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
.|.. ..+++.++.+++.|.
T Consensus 185 sg~~-------------~~~~~~~~~ak~~ga 203 (278)
T PRK11557 185 SGER-------------RELNLAADEALRVGA 203 (278)
T ss_pred CCCC-------------HHHHHHHHHHHHcCC
Confidence 7743 556778899999988
No 307
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=57.29 E-value=64 Score=31.13 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHHHHH-------hCCCCEEEEECC---------Cccch-------------hh-HHHHHHHhhhcCCC
Q 015808 114 PQLLSLNEILRLAYLFV-------TSGVDKIRLTGG---------EPTVR-------------KD-IEEACFHLSKLKGL 163 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~-------~~g~~~i~~~GG---------EPll~-------------~~-l~~~i~~~~~~~g~ 163 (400)
...||.++|.++++.+. +.|.+.|.|+|+ -|..+ .+ +.++++.+++.-|.
T Consensus 124 p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~ 203 (353)
T cd02930 124 PRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE 203 (353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 46799999999887653 468889999875 45543 23 46888888875443
Q ss_pred c-eEEEEec-------Ccchhh---hHHHHHHcCCCeEEEecC
Q 015808 164 K-TLAMTTN-------GLTLAR---KLPKLKESGLTSVNISLD 195 (400)
Q Consensus 164 ~-~~~i~TN-------G~ll~~---~~~~l~~~g~~~i~iSld 195 (400)
. .+.+-.| |.-+++ .++.|.+.|++.|.||.-
T Consensus 204 d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g 246 (353)
T cd02930 204 DFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIG 246 (353)
T ss_pred CceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 1 2332222 223332 235666789999999863
No 308
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=57.04 E-value=1.3e+02 Score=26.83 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=64.8
Q ss_pred EEC-CCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcC-------CC
Q 015808 139 LTG-GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR-------KG 210 (400)
Q Consensus 139 ~~G-GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~-------~~ 210 (400)
.+| |=|-..--..+++....-. . -+.|-|-|.+-++ ..+..|.|+.-+.++..++..+-. .+
T Consensus 62 g~GmGipS~sIY~~ELi~~y~Vk-~--iIRvGt~Gal~~~-------v~l~DvVia~~A~tds~~~~~~f~~~df~~~ad 131 (236)
T COG0813 62 GHGMGIPSISIYSRELITDYGVK-K--IIRVGTCGALSED-------VKLRDVVIAQGASTDSNVNRIRFKPHDFAPIAD 131 (236)
T ss_pred EecCCCccHHHHHHHHHHHhCcc-e--EEEEEccccccCC-------cccceEEEeccccCcchhhhcccCcccccccCC
Confidence 345 7776655555555544321 2 3677788876533 234567777776666555555432 34
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCh-hHHHHHHHHHHhCCC
Q 015808 211 HEKVMESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRDRPI 256 (400)
Q Consensus 211 ~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~-~el~~l~~~~~~~gv 256 (400)
|+-+..+.+.+.+.|+ ++.+..++..+.=+ .+ .++.+.+.+.|+
T Consensus 132 ~~Ll~~a~~~A~e~gi-~~hvgnv~ssD~FY~~~-~~~~~~~~~~gv 176 (236)
T COG0813 132 FELLEKAYETAKELGI-DTHVGNVFSSDLFYNPD-TEMFDLMAKYGV 176 (236)
T ss_pred HHHHHHHHHHHHHhCC-ceeeeeeeeeecccCCC-HHHHHHHHHhCC
Confidence 8999999999999999 88886666543211 12 555556666555
No 309
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=56.79 E-value=1.6e+02 Score=27.12 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=47.7
Q ss_pred HHHHHHcCCCeEEEecCCCCH---------HHHHHhhcCCCHHHHHHHHHHHHHcCCC-cEEEEEEEecCCChhHHHHHH
Q 015808 179 LPKLKESGLTSVNISLDTLVP---------AKFEFLTRRKGHEKVMESINAAIEVGYN-PVKVNCVVMRGFNDDEICDFV 248 (400)
Q Consensus 179 ~~~l~~~g~~~i~iSldg~~~---------~~~~~ir~~~~~~~v~~~i~~l~~~g~~-~v~i~~~v~~~~n~~el~~l~ 248 (400)
+..|.+.|.+.+-+.+--.+| ...+.+.++-+.+++++-++.+++.+.. ++.+.+-..+ .-..-+++|+
T Consensus 37 i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np-i~~~Gie~F~ 115 (265)
T COG0159 37 IKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP-IFNYGIEKFL 115 (265)
T ss_pred HHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH-HHHhhHHHHH
Confidence 344555666655555433221 2334455555688888888888876551 3333332222 1113577778
Q ss_pred HHHHhCCCeEEEEeeecC
Q 015808 249 ELTRDRPINIRFIEFMPF 266 (400)
Q Consensus 249 ~~~~~~gv~~~~~~~~p~ 266 (400)
+.+++.|++-..+.=+|+
T Consensus 116 ~~~~~~GvdGlivpDLP~ 133 (265)
T COG0159 116 RRAKEAGVDGLLVPDLPP 133 (265)
T ss_pred HHHHHcCCCEEEeCCCCh
Confidence 888887776444444443
No 310
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=56.76 E-value=1.3e+02 Score=26.11 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhc-CCCceEEEEecCcch-hhhHHHHHHcCCCeEEEe
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNIS 193 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~-~g~~~~~i~TNG~ll-~~~~~~l~~~g~~~i~iS 193 (400)
..+.++..++++.+ +.|+..|-+ |-|+..+.=.+.++.+++. .+. .+.+.+--.-. +..++.+.+.|.+.|.+.
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g~~~i~~l~~~~~~~-~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEGIEAVKEMKEAFPDR-KVLADLKTMDAGEYEAEQAFAAGADIVTVL 83 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhCHHHHHHHHHHCCCC-EEEEEEeeccchHHHHHHHHHcCCCEEEEe
Confidence 35788999999988 667665555 6666655545667777654 233 34443311111 124788899999988887
Q ss_pred cCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEE
Q 015808 194 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN 232 (400)
Q Consensus 194 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~ 232 (400)
.... + ..+.+.++.+++.|+ ++.+.
T Consensus 84 ~~~~-~------------~~~~~~i~~~~~~g~-~~~~~ 108 (206)
T TIGR03128 84 GVAD-D------------ATIKGAVKAAKKHGK-EVQVD 108 (206)
T ss_pred ccCC-H------------HHHHHHHHHHHHcCC-EEEEE
Confidence 6652 1 234456667778888 66553
No 311
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=56.73 E-value=1.5e+02 Score=26.78 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhCCCCE-EEEEC-CCccchhh-HHHHHHHhhhcCCCceEEE-EecCcchhhhHHHHHHc---CCCeE
Q 015808 118 SLNEILRLAYLFVTSGVDK-IRLTG-GEPTVRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLPKLKES---GLTSV 190 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~-i~~~G-GEPll~~~-l~~~i~~~~~~~g~~~~~i-~TNG~ll~~~~~~l~~~---g~~~i 190 (400)
..+.+...++.+++.|... +.+.. .-|...++ +.++++.+.+. |...+.+ .|.|...++.+..+.+. ....+
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~ 191 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA-GADEISLKDTVGLATPEEVAELVKALREALPDV 191 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc-CCCEEEechhcCCcCHHHHHHHHHHHHHhCCCC
Confidence 4667777777777877542 22222 22223343 67788888775 5544554 57887776555433321 12236
Q ss_pred EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC----hhHHHHHHHHHHhCCC
Q 015808 191 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN----DDEICDFVELTRDRPI 256 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n----~~el~~l~~~~~~~gv 256 (400)
.+++.+.+ ++.-.+.|.-.+.++|... |.+++.. .- .-.+++++.++...|.
T Consensus 192 ~~~~H~Hn-----------~~gla~an~laA~~aG~~~--id~s~~G-~G~~~Gn~~~e~~~~~l~~~~~ 247 (265)
T cd03174 192 PLGLHTHN-----------TLGLAVANSLAALEAGADR--VDGSVNG-LGERAGNAATEDLVAALEGLGI 247 (265)
T ss_pred eEEEEeCC-----------CCChHHHHHHHHHHcCCCE--EEecccc-ccccccCccHHHHHHHHHhcCC
Confidence 67766632 2344566666666788722 4444431 21 1246777777776653
No 312
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=56.22 E-value=2.4e+02 Score=28.78 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEECCCcc-chh-hHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCC
Q 015808 120 NEILRLAYLFVTSGVDKIRLTGGEPT-VRK-DIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTL 197 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~GGEPl-l~~-~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~ 197 (400)
+.+.+.+.++.+.|..-|.+.| +++ -.+ .+..+++.+++..++ .++|.|- -.+.++.-+++|.+.|+ |+++.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~-~st~p~~~~v~~~V~~l~~~~~~-pISIDT~---~~~v~eaAL~aGAdiIN-sVs~~ 238 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGT-GSFDDDPDVVKEKVKTALDALDS-PVIADTP---TLDELYEALKAGASGVI-MPDVE 238 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-CcCCCcHHHHHHHHHHHHhhCCC-cEEEeCC---CHHHHHHHHHcCCCEEE-ECCcc
Confidence 7777778888888977777765 332 123 377888888875455 6888873 23555666666876555 77774
Q ss_pred C-HHHHHHhhc------------CCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q 015808 198 V-PAKFEFLTR------------RKGHEKVMESINAAIEVGYNPVKVNCVV 235 (400)
Q Consensus 198 ~-~~~~~~ir~------------~~~~~~v~~~i~~l~~~g~~~v~i~~~v 235 (400)
+ ++....+.. ...++...+.++.+.+.|+.++.+--.+
T Consensus 239 ~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPgl 289 (499)
T TIGR00284 239 NAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSL 289 (499)
T ss_pred chhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCC
Confidence 3 222221111 1226778888999999998433333333
No 313
>PHA02031 putative DnaG-like primase
Probab=56.13 E-value=64 Score=29.71 Aligned_cols=63 Identities=21% Similarity=0.143 Sum_probs=46.2
Q ss_pred CCCceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEec
Q 015808 161 KGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR 237 (400)
Q Consensus 161 ~g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~ 237 (400)
.|+ ...+-|-||.++ +.+..|.+.+.+.|.+.+||- .. +.+-+.++++.+...|+ . +.+++.+
T Consensus 180 aG~-~naVA~LGTALT~~q~~~L~r~~~~~Vil~fDgD-~A---------G~~Aa~ra~~~l~~~~~-~--v~vv~lP 243 (266)
T PHA02031 180 KPE-VFAVALLGTRLRDRLAAILLQQTCPRVLIFLDGD-PA---------GVDGSAGAMRRLRPLLI-E--GQVIITP 243 (266)
T ss_pred cCc-ceEEECCcccCCHHHHHHHHhcCCCCEEEEeCCC-HH---------HHHHHHHHHHHHHHcCC-c--eEEEECC
Confidence 488 678899999996 556777776568999999993 32 34667788888888877 4 4555555
No 314
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=56.03 E-value=1.6e+02 Score=29.85 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEEC--CCccchhhHHHHHHHhhhcC-CCceEEEEecCcchhhhHHHHHHcCCCeEEEecCC
Q 015808 120 NEILRLAYLFVTSGVDKIRLTG--GEPTVRKDIEEACFHLSKLK-GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDT 196 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~G--GEPll~~~l~~~i~~~~~~~-g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg 196 (400)
+++.+.+..+.+.|++.|.+-. |.| ..+.++++.+++.. ++ . .|.-|+.. .+....|.+.|.+.|.|++-+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~---~~~~~~i~~i~~~~~~~-~-vi~g~~~t-~~~~~~l~~~G~d~i~vg~g~ 297 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQ---VKMISAIKAVRALDLGV-P-IVAGNVVS-AEGVRDLLEAGANIIKVGVGP 297 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCc---HHHHHHHHHHHHHCCCC-e-EEEeccCC-HHHHHHHHHhCCCEEEECCcC
Confidence 4555667777788988888855 666 44678888888742 33 2 34444432 366789999999999999887
Q ss_pred CCHHHHHHhhcCC--CHHHHHHHHHHHHHcCC
Q 015808 197 LVPAKFEFLTRRK--GHEKVMESINAAIEVGY 226 (400)
Q Consensus 197 ~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~ 226 (400)
..--+...+.+.+ ...-+++..+.+.+.|+
T Consensus 298 Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~ 329 (475)
T TIGR01303 298 GAMCTTRMMTGVGRPQFSAVLECAAEARKLGG 329 (475)
T ss_pred CccccCccccCCCCchHHHHHHHHHHHHHcCC
Confidence 6543333344433 37788888888888776
No 315
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=55.64 E-value=75 Score=27.31 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEECC--C----ccchh-------hHHHHHHHhhhcCCCceEEEEecCcchh------hhH
Q 015808 119 LNEILRLAYLFVTSGVDKIRLTGG--E----PTVRK-------DIEEACFHLSKLKGLKTLAMTTNGLTLA------RKL 179 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~~~GG--E----Pll~~-------~l~~~i~~~~~~~g~~~~~i~TNG~ll~------~~~ 179 (400)
.+.+.+.++.++.+|++.+.+..| + ..... .+.++++++++. |+ .+.+.+.+.... +.+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-gv-~i~lE~~~~~~~~~~~~~~~~ 147 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEY-GV-RIALENHPGPFSETPFSVEEI 147 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHH-TS-EEEEE-SSSSSSSEESSHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhh-cc-eEEEecccCccccchhhHHHH
Confidence 678888888888999999999876 2 11111 245666666664 87 788887654431 555
Q ss_pred HHHH-HcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc
Q 015808 180 PKLK-ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV 224 (400)
Q Consensus 180 ~~l~-~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~ 224 (400)
..++ +.+-..+.+.+|.. ..+ .. -....+.++.+.+.
T Consensus 148 ~~~l~~~~~~~~~i~~D~~--h~~--~~----~~~~~~~i~~~~~~ 185 (213)
T PF01261_consen 148 YRLLEEVDSPNVGICFDTG--HLI--MA----GEDPDEAIKRLAPR 185 (213)
T ss_dssp HHHHHHHTTTTEEEEEEHH--HHH--HT----THHHHHHHHHHHHG
T ss_pred HHHHhhcCCCcceEEEehH--HHH--Hc----CCCHHHHHHHhhcc
Confidence 4444 45555699999873 111 11 14455566666554
No 316
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=55.56 E-value=1e+02 Score=28.67 Aligned_cols=43 Identities=9% Similarity=-0.012 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccch------h-----hHHHHHHHhhh
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVR------K-----DIEEACFHLSK 159 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~------~-----~l~~~i~~~~~ 159 (400)
.+...+...+..+.+.|+.+|....|+|.-. + ...++++.+++
T Consensus 82 ~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~ 135 (287)
T PF02219_consen 82 RNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQ 135 (287)
T ss_dssp SBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHH
Confidence 4678899999999999999999998887533 1 14567777663
No 317
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=55.46 E-value=1e+02 Score=28.98 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEE----------C-CCccch-hh-HHHHHHHhhhcCCCc-eEEEEecCcchhhhHHHHH
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLT----------G-GEPTVR-KD-IEEACFHLSKLKGLK-TLAMTTNGLTLARKLPKLK 183 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~----------G-GEPll~-~~-l~~~i~~~~~~~g~~-~~~i~TNG~ll~~~~~~l~ 183 (400)
+.+++.+.++.+.+.|...|.|- | |..+++ ++ +.++++.+++...+. .+-+..|-.-+.+.++.+.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~ 190 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAK 190 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHH
Confidence 56888888888877676666551 2 556664 55 678888887643431 3334333333345557788
Q ss_pred HcCCCeEEEe--------cC--CCCHH--HH-----HHhhcCCCHHHHHHHHHHHHHc
Q 015808 184 ESGLTSVNIS--------LD--TLVPA--KF-----EFLTRRKGHEKVMESINAAIEV 224 (400)
Q Consensus 184 ~~g~~~i~iS--------ld--g~~~~--~~-----~~ir~~~~~~~v~~~i~~l~~~ 224 (400)
+.|.+.|.++ +| +..+. .| .-+.|...+...++.+..+.+.
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~ 248 (299)
T cd02940 191 EGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARA 248 (299)
T ss_pred HcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHh
Confidence 8899887742 22 21111 11 1122222366778888888775
No 318
>PF11946 DUF3463: Domain of unknown function (DUF3463); InterPro: IPR022563 This functionally uncharacterised domain is found in bacteria and archaea, which is about 140 amino acids in length and is found C-terminal to PF04055 from PFAM. It contains two conserved sequence motifs: CTPWG and PCYL. This domain is associated with hopanoid biosynthesis associated radical SAM proteins.
Probab=54.91 E-value=4.6 Score=32.99 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=40.1
Q ss_pred cCcCCCCCeEEEccCCeEEeccCCCCCCCchHHhhcCCCHHHHHHHHHHHHHhchhhhcccccccccccccccccc
Q 015808 324 EHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIG 399 (400)
Q Consensus 324 ~~~C~~~~~l~I~~dG~v~pC~~~~~~~~lg~i~~~~~~~~~l~ei~~~a~~~k~~~~~~~~~~~~~~~~~~~~~~ 399 (400)
...|.......+++.|-..||-..++. ....++|+|+.-.+.+.. .|.+. .|.+| |.|||
T Consensus 57 ~~~CtPWg~pt~n~~Gwq~PCYLl~eg-----------y~~tfkeLme~t~We~Yg--~g~~p-rC~~C--m~hcG 116 (138)
T PF11946_consen 57 DYECTPWGNPTRNPFGWQKPCYLLNEG-----------YAGTFKELMETTDWEKYG--VGRDP-RCANC--MVHCG 116 (138)
T ss_pred CCcccCCCCCccCccccccCCEEecCc-----------chhHHHHHHHCCChHhhC--CCCCC-CHHHH--HHHhc
Confidence 457877778899999999999754332 234577888887777765 44444 34333 55554
No 319
>PRK07329 hypothetical protein; Provisional
Probab=54.74 E-value=1.1e+02 Score=27.70 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=45.4
Q ss_pred HHHHHHHhhhcCCCceEEEEecCcch-------hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 015808 150 IEEACFHLSKLKGLKTLAMTTNGLTL-------ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 222 (400)
Q Consensus 150 l~~~i~~~~~~~g~~~~~i~TNG~ll-------~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~ 222 (400)
+.++++.+++. |+ .+.|+|+|... ...++...+.|...|.++-|+-.++.... .| -++++.+.
T Consensus 167 ~~~i~~~~~~~-~~-~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~-----~~---~~a~~~l~ 236 (246)
T PRK07329 167 LTRIFAKMIDN-DL-AFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRY-----NF---DDAQKLLK 236 (246)
T ss_pred HHHHHHHHHHc-CC-eEEEECcccccCCCCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHH-----HH---HHHHHHHH
Confidence 46778888875 77 68899987531 12356666778756899999977664321 24 35567778
Q ss_pred HcCC
Q 015808 223 EVGY 226 (400)
Q Consensus 223 ~~g~ 226 (400)
+.|+
T Consensus 237 ~~g~ 240 (246)
T PRK07329 237 EHGI 240 (246)
T ss_pred HcCC
Confidence 8888
No 320
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=54.20 E-value=43 Score=31.73 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEE--------------------C--CCccchhhHHHHHHHhhhcCCCceEE--
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLT--------------------G--GEPTVRKDIEEACFHLSKLKGLKTLA-- 167 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~--------------------G--GEPll~~~l~~~i~~~~~~~g~~~~~-- 167 (400)
..+..++.+.++++|+.+...+...+.++ | |+.+...++.+++++++.. || .|.
T Consensus 10 ~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~r-gI-~vIPE 87 (311)
T cd06570 10 VSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDR-GI-RVVPE 87 (311)
T ss_pred cCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHc-CC-EEEEe
Confidence 34567899999999999988776554443 2 4555567899999999985 87 443
Q ss_pred EEecCc
Q 015808 168 MTTNGL 173 (400)
Q Consensus 168 i~TNG~ 173 (400)
|.+=|.
T Consensus 88 Id~PGH 93 (311)
T cd06570 88 IDVPGH 93 (311)
T ss_pred ecCccc
Confidence 445453
No 321
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=54.13 E-value=1.9e+02 Score=26.98 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccc-------h----hhHHHHHHHhhhcCCC-ceEEEEec
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTV-------R----KDIEEACFHLSKLKGL-KTLAMTTN 171 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll-------~----~~l~~~i~~~~~~~g~-~~~~i~TN 171 (400)
.+.+++...+..+.+.|+++|...+|+|-. . ..-.++++.+++..+. ..+.+..+
T Consensus 71 ~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~ 137 (281)
T TIGR00677 71 MPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGY 137 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEEC
Confidence 456788889999999999999888887732 1 1146777777653222 14555555
No 322
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=54.02 E-value=1.9e+02 Score=27.02 Aligned_cols=137 Identities=17% Similarity=0.180 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEE-CCC-ccchhh-HHHHHHHhhhcCCCceEEEEec-CcchhhhHHHHHHcCCCeEE
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLT-GGE-PTVRKD-IEEACFHLSKLKGLKTLAMTTN-GLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~-GGE-Pll~~~-l~~~i~~~~~~~g~~~~~i~TN-G~ll~~~~~~l~~~g~~~i~ 191 (400)
..+.+.+..+++...+.+..-|.-. -|. .....+ +..+++.+.+...+ .|.+..+ |..+ +.+.+-++.|+++|.
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~v-PV~lHLDH~~~~-e~i~~Ai~~GftSVM 102 (283)
T PRK07998 25 TTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDV-PVSLHLDHGKTF-EDVKQAVRAGFTSVM 102 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCC-CEEEECcCCCCH-HHHHHHHHcCCCEEE
Confidence 3578888899988877764433322 222 122222 56666666665566 5666554 3322 556677788998888
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC---------hhHHHHHHHHHHhCCCeEEEEe
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN---------DDEICDFVELTRDRPINIRFIE 262 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n---------~~el~~l~~~~~~~gv~~~~~~ 262 (400)
+ ||.. ..++. ..+.+.+.++.+...|+ .|....-...|.. ..+.++..+|+.+.|++.--+.
T Consensus 103 ~--DgS~-l~~ee-----Ni~~T~~vve~Ah~~gv-~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAva 173 (283)
T PRK07998 103 I--DGAA-LPFEE-----NIAFTKEAVDFAKSYGV-PVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVS 173 (283)
T ss_pred E--eCCC-CCHHH-----HHHHHHHHHHHHHHcCC-EEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehh
Confidence 8 5632 22211 13566677778888888 6754443332321 2357788889999998754443
Q ss_pred e
Q 015808 263 F 263 (400)
Q Consensus 263 ~ 263 (400)
+
T Consensus 174 i 174 (283)
T PRK07998 174 I 174 (283)
T ss_pred c
Confidence 3
No 323
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=53.60 E-value=48 Score=31.69 Aligned_cols=10 Identities=20% Similarity=0.016 Sum_probs=4.4
Q ss_pred HHHHHHHhhh
Q 015808 150 IEEACFHLSK 159 (400)
Q Consensus 150 l~~~i~~~~~ 159 (400)
..++++.+.+
T Consensus 243 ~~~ia~~Le~ 252 (336)
T cd02932 243 SVELAKALKE 252 (336)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 324
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.56 E-value=1.3e+02 Score=29.19 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHH-------hCCCCEEEEECCC---------ccch-------------hh-HHHHHHHhhhcCC-
Q 015808 114 PQLLSLNEILRLAYLFV-------TSGVDKIRLTGGE---------PTVR-------------KD-IEEACFHLSKLKG- 162 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~-------~~g~~~i~~~GGE---------Pll~-------------~~-l~~~i~~~~~~~g- 162 (400)
.+.||.++|..+++.+. +.|...|.++++. |..+ .. +.++++.+++.-|
T Consensus 131 p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~ 210 (361)
T cd04747 131 GREMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGP 210 (361)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 46799999999988664 4688999998877 6553 22 3688888887533
Q ss_pred -CceEEEEecC-----------cchhhh---HHHHHHcCCCeEEEecC
Q 015808 163 -LKTLAMTTNG-----------LTLARK---LPKLKESGLTSVNISLD 195 (400)
Q Consensus 163 -~~~~~i~TNG-----------~ll~~~---~~~l~~~g~~~i~iSld 195 (400)
+ .+.+-.|+ ..+++. +..|.+.|++.|.+|.-
T Consensus 211 d~-~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 211 DF-PIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred CC-eEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 3 34443443 112221 24456778999888864
No 325
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=53.25 E-value=1.9e+02 Score=27.78 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCC----CEEEEECCCccchhhHHHHHHHhhhcCCCceEEEE-ecC
Q 015808 98 RCHYCMPPEGVDLTPKPQLLSLNEILRLAYLFVTSGV----DKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMT-TNG 172 (400)
Q Consensus 98 ~C~yC~~~~~~~~~~~~~~~s~e~i~~ii~~~~~~g~----~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~-TNG 172 (400)
-|.+|...... .........+++.++++.+++.+- --|.++|| .|=.-++..+++..|...+.++ ++|
T Consensus 23 vC~~C~~~~~~--~~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGG-----kDSs~la~ll~~~~gl~~l~vt~~~~ 95 (343)
T TIGR03573 23 VCSACRNFEEK--SKIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGG-----KDSTYQAHVLKKKLGLNPLLVTVDPG 95 (343)
T ss_pred CchhhhhHHhh--cCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCC-----HHHHHHHHHHHHHhCCceEEEEECCC
Confidence 47788764311 011111224567778888776543 24777888 2211111122121244223232 355
Q ss_pred cchh---hhHHHHHH-cCCCeEEEecCC
Q 015808 173 LTLA---RKLPKLKE-SGLTSVNISLDT 196 (400)
Q Consensus 173 ~ll~---~~~~~l~~-~g~~~i~iSldg 196 (400)
...+ +.+..+.+ .|++.+.+.++.
T Consensus 96 ~~~e~~~~n~~~~~~~lgvd~~~i~~d~ 123 (343)
T TIGR03573 96 WNTELGVKNLNNLIKKLGFDLHTITINP 123 (343)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEeCCH
Confidence 4322 24555554 788888888875
No 326
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=52.72 E-value=1.2e+02 Score=27.99 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCcc----ch-------hhHHHHHHHhhhcCCCceEEEEec-Ccch--hhhHHHHH
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPT----VR-------KDIEEACFHLSKLKGLKTLAMTTN-GLTL--ARKLPKLK 183 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPl----l~-------~~l~~~i~~~~~~~g~~~~~i~TN-G~ll--~~~~~~l~ 183 (400)
..+.+.+.++.+...|...|.+.|+++. .. ..+.++++.+++ .|+ .+.+.+. +..+ ...+..+.
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~Gv-~l~lE~~~~~~~~t~~~~~~li 169 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAAR-AQV-TLAVEIMDTPFMSSISKWLKWD 169 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHH-cCC-EEEEeeCCCchhcCHHHHHHHH
Confidence 3556778888888999999988876432 11 224566666666 488 7888763 2222 13344444
Q ss_pred -HcCCCeEEEecCCCC
Q 015808 184 -ESGLTSVNISLDTLV 198 (400)
Q Consensus 184 -~~g~~~i~iSldg~~ 198 (400)
..+-..+.+.+|...
T Consensus 170 ~~v~~~~v~~~~D~~h 185 (279)
T TIGR00542 170 HYLNSPWFTLYPDIGN 185 (279)
T ss_pred HHcCCCceEEEeCcCh
Confidence 345568888888853
No 327
>PRK13663 hypothetical protein; Provisional
Probab=52.60 E-value=2.3e+02 Score=28.00 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=49.8
Q ss_pred eEEEecCCCCHHHHHHhhcCCC--H-HHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEEeee
Q 015808 189 SVNISLDTLVPAKFEFLTRRKG--H-EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFM 264 (400)
Q Consensus 189 ~i~iSldg~~~~~~~~ir~~~~--~-~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~ 264 (400)
.|.|.+.+. +-..+++|+.-+ | +.+++-|+.+++.|+ .|. ++|+++-.+......+.+.+..+|+.+......
T Consensus 67 EIvi~I~A~-DIe~nKiRgDlGItYd~dVLRLiD~fr~~gl-~V~-sVVITqy~~qp~a~~F~~rLe~~GIkvy~Hy~i 142 (493)
T PRK13663 67 EIVIAINAN-DIERNKIRGDLGITYDQDVLRLIDDFRELGL-YVG-SVVITQYDGQPAADAFRNRLERLGIKVYRHYPI 142 (493)
T ss_pred eEEEEEEhh-hhhhccccccCCCchhHHHHHHHHHHHhcCc-eee-eEEEEecCCChHHHHHHHHHHHCCCceEEecCc
Confidence 677777774 344566776544 4 789999999999998 432 233444223356788889999999987665443
No 328
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=52.13 E-value=93 Score=27.76 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcch-hhhHHHHHHcCCCeEEEecCC
Q 015808 120 NEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDT 196 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll-~~~~~~l~~~g~~~i~iSldg 196 (400)
+++.+.++.+.+.|+..|.+. ++.+.++++..- +++ .+...+..... +..+..+.+.|+..+.+|.+-
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~------~~g~~~~~k~~~--~~~-~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL 70 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVS------NPGLLELLKELG--PDL-KIIADYSLNVFNSESARFLKELGASRITLSPEL 70 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEc------CHHHHHHHHHhC--CCC-cEEEecCccCCCHHHHHHHHHcCCCEEEECccC
Confidence 577888888999998887775 333444444432 244 45555554444 356788888899999999776
No 329
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=52.06 E-value=1.7e+02 Score=25.93 Aligned_cols=53 Identities=26% Similarity=0.380 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEec
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN 171 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TN 171 (400)
+..+++.+.+.+..+.|-..+.+..|+|+++--..++++.+.+. ++ .+.+...
T Consensus 55 ~~~~~~~~~i~~~~~~g~~V~~L~~GDP~~~~~~~~l~~~~~~~-g~-~veviPG 107 (229)
T TIGR01465 55 MSLEEIVDIMSDAHREGKLVVRLHTGDPSIYGAIAEQMQLLEAL-GI-PYEVVPG 107 (229)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeCcCccccccHHHHHHHHHHC-CC-CEEEECC
Confidence 45667777666555566566778899999987778888888774 77 5776543
No 330
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=51.68 E-value=4.1e+02 Score=30.24 Aligned_cols=131 Identities=14% Similarity=0.153 Sum_probs=84.4
Q ss_pred CCCCCHHHHHHHHHHHHh--CCCCEEEEECCCcc------chhhHHHHHHHhhh-cCCCceEEEEecCcch-------hh
Q 015808 114 PQLLSLNEILRLAYLFVT--SGVDKIRLTGGEPT------VRKDIEEACFHLSK-LKGLKTLAMTTNGLTL-------AR 177 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~--~g~~~i~~~GGEPl------l~~~l~~~i~~~~~-~~g~~~~~i~TNG~ll-------~~ 177 (400)
...|..+++..++..+.+ .|...+-..||--+ |+.+=-+-++.+++ .+++ .+.+...|..+ ++
T Consensus 547 atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~-~~qml~Rg~n~vgy~~ypd~ 625 (1143)
T TIGR01235 547 ATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNI-LFQMLLRGANGVGYTNYPDN 625 (1143)
T ss_pred hhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCC-ceeeeeccccccCccCCCHH
Confidence 345788999999998887 48889999998753 23221122333332 2344 56666666532 22
Q ss_pred h----HHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEec--------CCChhHHH
Q 015808 178 K----LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR--------GFNDDEIC 245 (400)
Q Consensus 178 ~----~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~--------~~n~~el~ 245 (400)
. ++...+.|++.+.| +|+.+ ..+....+++.+++.|. .+....+.+- -.+.+.+.
T Consensus 626 vv~~f~~~~~~~Gidifri-fD~lN-----------~~~n~~~~~~~~~~~g~-~~~~~i~yt~~~~d~~~~~~~l~y~~ 692 (1143)
T TIGR01235 626 VVKYFVKQAAQGGIDIFRV-FDSLN-----------WVENMRVGMDAVAEAGK-VVEAAICYTGDILDPARPKYDLKYYT 692 (1143)
T ss_pred HHHHHHHHHHHcCCCEEEE-CccCc-----------CHHHHHHHHHHHHHcCC-EEEEEEEEeccCCCcCCCCCCHHHHH
Confidence 2 34456788987777 67763 25677788888899998 7766665551 13455667
Q ss_pred HHHHHHHhCCCeE
Q 015808 246 DFVELTRDRPINI 258 (400)
Q Consensus 246 ~l~~~~~~~gv~~ 258 (400)
++++.+.+.|++.
T Consensus 693 ~~ak~l~~~Gad~ 705 (1143)
T TIGR01235 693 NLAVELEKAGAHI 705 (1143)
T ss_pred HHHHHHHHcCCCE
Confidence 7777778888753
No 331
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=51.47 E-value=1.5e+02 Score=25.22 Aligned_cols=97 Identities=20% Similarity=0.349 Sum_probs=53.7
Q ss_pred CEEEEEC-CCccchhh-H-HHHHHHhh-hcCCCceEEEEecCcchh---------h----hHHHHHHcCCCeEEEecCCC
Q 015808 135 DKIRLTG-GEPTVRKD-I-EEACFHLS-KLKGLKTLAMTTNGLTLA---------R----KLPKLKESGLTSVNISLDTL 197 (400)
Q Consensus 135 ~~i~~~G-GEPll~~~-l-~~~i~~~~-~~~g~~~~~i~TNG~ll~---------~----~~~~l~~~g~~~i~iSldg~ 197 (400)
.+|...| |---.+.. | .+++.+.+ +.+++..+.++||...++ . +++.+-..|=.-+.||--|-
T Consensus 42 ~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGN 121 (176)
T COG0279 42 NKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGN 121 (176)
T ss_pred CEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence 4666666 54444433 4 56666554 334565677887765542 1 12222222322566665552
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHH
Q 015808 198 VPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 198 ~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~ 249 (400)
-..|+++++.+++.|+ .++.+.|.+-..+..+.+
T Consensus 122 -------------S~nVl~Ai~~Ak~~gm-----~vI~ltG~~GG~~~~~~D 155 (176)
T COG0279 122 -------------SKNVLKAIEAAKEKGM-----TVIALTGKDGGKLAGLLD 155 (176)
T ss_pred -------------CHHHHHHHHHHHHcCC-----EEEEEecCCCcccccccc
Confidence 2567888888888887 223333556666666653
No 332
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=51.35 E-value=1.9e+02 Score=26.29 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchh---h-hHHHHHHcCCCeEEEec
Q 015808 119 LNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA---R-KLPKLKESGLTSVNISL 194 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~---~-~~~~l~~~g~~~i~iSl 194 (400)
.|-+..+++...+.| ..|.|.||.|-....+ .+.+++..++ .+.-..+|+.-+ + .++.+.+.+.+.|-|.+
T Consensus 91 ~dl~~~ll~~~~~~~-~~v~llG~~~~v~~~a---~~~l~~~y~l-~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~Vgl 165 (243)
T PRK03692 91 ADLWEALMARAGKEG-TPVFLVGGKPEVLAQT---EAKLRTQWNV-NIVGSQDGYFTPEQRQALFERIHASGAKIVTVAM 165 (243)
T ss_pred HHHHHHHHHHHHhcC-CeEEEECCCHHHHHHH---HHHHHHHhCC-EEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEC
Confidence 566667777666666 7899999998765444 4444332256 444346898742 2 24777788899999999
Q ss_pred CCCCHHH
Q 015808 195 DTLVPAK 201 (400)
Q Consensus 195 dg~~~~~ 201 (400)
-.+..|.
T Consensus 166 G~PkQE~ 172 (243)
T PRK03692 166 GSPKQEI 172 (243)
T ss_pred CCcHHHH
Confidence 8875544
No 333
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=51.24 E-value=2.1e+02 Score=27.53 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=39.0
Q ss_pred CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc---CCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 187 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV---GYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 187 ~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~---g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
.+.+.+.+-.++..-...........++++.++..... .+ +|.+.+. ++.+.+++.++++.+.+.|++
T Consensus 170 ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~-PV~vKls--p~~~~~~~~~ia~~l~~~Gad 240 (344)
T PRK05286 170 ADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYV-PLLVKIA--PDLSDEELDDIADLALEHGID 240 (344)
T ss_pred CCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCC-ceEEEeC--CCCCHHHHHHHHHHHHHhCCc
Confidence 66666666554321110000111155666666665542 25 6766655 455667899999999998885
No 334
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=51.19 E-value=1.8e+02 Score=26.03 Aligned_cols=113 Identities=10% Similarity=0.137 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE--ECCC--ccchhhHHHHHHHhhhcC-CCc-eEEEEecCcchhhhHHHHHHcCCCeE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRL--TGGE--PTVRKDIEEACFHLSKLK-GLK-TLAMTTNGLTLARKLPKLKESGLTSV 190 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~--~GGE--Pll~~~l~~~i~~~~~~~-g~~-~~~i~TNG~ll~~~~~~l~~~g~~~i 190 (400)
.++-.+.+.++.+.+.|+..+.+ .-|. |-+... .++++.+++.. .+. .+.+-++ .....++.+.+.|.+.+
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G-~~~v~~lr~~~~~~~lDvHLm~~--~p~~~i~~~~~~Gad~i 92 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFG-PPVVKSLRKHLPNTFLDCHLMVS--NPEKWVDDFAKAGASQF 92 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcC-HHHHHHHHhcCCCCCEEEEECCC--CHHHHHHHHHHcCCCEE
Confidence 34567778888888888766555 4565 333222 46666666542 331 2333322 23455688899999999
Q ss_pred EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHH
Q 015808 191 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFV 248 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~ 248 (400)
+|..++.. +.+.+.++.+++.|. .++ .++.+....+++.+++
T Consensus 93 tvH~ea~~-------------~~~~~~l~~ik~~G~-~~g--val~p~t~~e~l~~~l 134 (228)
T PTZ00170 93 TFHIEATE-------------DDPKAVARKIREAGM-KVG--VAIKPKTPVEVLFPLI 134 (228)
T ss_pred EEeccCCc-------------hHHHHHHHHHHHCCC-eEE--EEECCCCCHHHHHHHH
Confidence 99887631 124556677777887 555 4455544445555443
No 335
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=51.16 E-value=1.7e+02 Score=25.63 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE--ECCCccchhhH-HHHHHHhhhcCCCceEEEEecCcch--hhhHHHHHHcCCCeEEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRL--TGGEPTVRKDI-EEACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESGLTSVNI 192 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~--~GGEPll~~~l-~~~i~~~~~~~g~~~~~i~TNG~ll--~~~~~~l~~~g~~~i~i 192 (400)
++..+.....++.+.|...+.+ .-|.-.-+--| .-+++.+++..+. ...+.+.-... .+.+..+.++|.+.+++
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~-~~ffD~HmMV~~Peq~V~~~a~agas~~tf 93 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGA-DPFFDVHMMVENPEQWVDQMAKAGASLFTF 93 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhccCC-CcceeEEEeecCHHHHHHHHHhcCcceEEE
Confidence 3556666677777888776655 33542222112 2455666654332 21222222222 34458999999999999
Q ss_pred ecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHH
Q 015808 193 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 193 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~ 249 (400)
..+..+ +..+.++++++.|. . +.+.+.||...++++.+++
T Consensus 94 H~E~~q--------------~~~~lv~~ir~~Gm-k--~G~alkPgT~Ve~~~~~~~ 133 (224)
T KOG3111|consen 94 HYEATQ--------------KPAELVEKIREKGM-K--VGLALKPGTPVEDLEPLAE 133 (224)
T ss_pred EEeecc--------------CHHHHHHHHHHcCC-e--eeEEeCCCCcHHHHHHhhc
Confidence 987742 24566778888888 4 4556778765566666555
No 336
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.09 E-value=1e+02 Score=28.43 Aligned_cols=79 Identities=16% Similarity=0.078 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCccc----h-------hhHHHHHHHhhhcCCCceEEEEecC-cch--hhhHHHHH
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPTV----R-------KDIEEACFHLSKLKGLKTLAMTTNG-LTL--ARKLPKLK 183 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPll----~-------~~l~~~i~~~~~~~g~~~~~i~TNG-~ll--~~~~~~l~ 183 (400)
..+.+++.++....+|...|.+.|+.+-. . ..+.++++.+++. |+ .+.+.+-. ..+ .+....++
T Consensus 97 ~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~-GV-~i~iE~~~~~~~~~~~~~~~ll 174 (283)
T PRK13209 97 ALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRA-SV-TLAFEIMDTPFMNSISKALGYA 174 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEeecCCcccCCHHHHHHHH
Confidence 35667788888899999999988765321 1 1245666666664 88 78887643 222 23343444
Q ss_pred -HcCCCeEEEecCCCC
Q 015808 184 -ESGLTSVNISLDTLV 198 (400)
Q Consensus 184 -~~g~~~i~iSldg~~ 198 (400)
+.+-..+.+.+|..+
T Consensus 175 ~~v~~~~lgl~~D~~h 190 (283)
T PRK13209 175 HYLNSPWFQLYPDIGN 190 (283)
T ss_pred HHhCCCccceEeccch
Confidence 445568999999853
No 337
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=50.92 E-value=1.5e+02 Score=24.87 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=73.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEEC--CCccchhhHHHHHHHhhhcCCCceEEEEec-------Ccc-hhhhH-HH
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVRKDIEEACFHLSKLKGLKTLAMTTN-------GLT-LARKL-PK 181 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~~~l~~~i~~~~~~~g~~~~~i~TN-------G~l-l~~~~-~~ 181 (400)
....-+.+.+.-.++..+++|++++.+.. |+--+ .+++.+.. .+ .+.+.|. |+. +++++ +.
T Consensus 7 pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~-----k~lemveg--~l-kvVvVthh~Gf~e~g~~e~~~E~~~~ 78 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGIKHIVVASSTGYTAL-----KALEMVEG--DL-KVVVVTHHAGFEEKGTQEMDEEVRKE 78 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCcceEEEEecccHHHH-----HHHHhccc--Cc-eEEEEEeecccccCCceecCHHHHHH
Confidence 34556677777778888999999988753 65432 34444443 24 3444453 222 34555 67
Q ss_pred HHHcCCCeEEEe--cCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEec
Q 015808 182 LKESGLTSVNIS--LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR 237 (400)
Q Consensus 182 l~~~g~~~i~iS--ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~ 237 (400)
|.+.|.+.+.=| +.|.....-+++.|....+-+-++++ +...|+ +|.+..+++.
T Consensus 79 L~erGa~v~~~sHalSg~eRsis~kfGG~~p~eiiAetLR-~fg~G~-KVcvEItiMA 134 (186)
T COG1751 79 LKERGAKVLTQSHALSGVERSISRKFGGYSPLEIIAETLR-MFGQGV-KVCVEITIMA 134 (186)
T ss_pred HHHcCceeeeehhhhhcchhhhhhhcCCcchHHHHHHHHH-HhcCCc-EEEEEEEEEe
Confidence 778887554433 55654555555555555788888888 777899 9999999876
No 338
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=50.82 E-value=1.3e+02 Score=27.62 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=59.1
Q ss_pred cCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhh-cCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhH-HHHHH
Q 015808 171 NGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLT-RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE-ICDFV 248 (400)
Q Consensus 171 NG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir-~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~e-l~~l~ 248 (400)
-|-.-++.++.+++...+.+. ++|+ +..+=-.| +..+++..++|++.+.+.....+.+..-+.++.|..+ +.++.
T Consensus 186 qGp~~~~~l~~i~e~~P~v~i--i~GP-pty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHllRD~~y~e~l~~l~ 262 (304)
T COG2248 186 QGPINDEALEFILEKRPDVLI--IGGP-PTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHLLRDKNYREFLEELF 262 (304)
T ss_pred cCCCccHHHHHHHhcCCCEEE--ecCC-chhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeehhhcCCCHHHHHHHHH
Confidence 454556778888887665444 4564 33222222 3345999999999999987656777777777778755 68888
Q ss_pred HHHHhCCCeE
Q 015808 249 ELTRDRPINI 258 (400)
Q Consensus 249 ~~~~~~gv~~ 258 (400)
+...+.|+.+
T Consensus 263 ~~~~~~GV~v 272 (304)
T COG2248 263 ERAEKAGVEV 272 (304)
T ss_pred hhHhhcCcee
Confidence 8888888865
No 339
>PRK07328 histidinol-phosphatase; Provisional
Probab=50.71 E-value=1e+02 Score=28.43 Aligned_cols=69 Identities=29% Similarity=0.388 Sum_probs=47.1
Q ss_pred hhHHHHHHHhhhcCCCceEEEEecCcch--------hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHH
Q 015808 148 KDIEEACFHLSKLKGLKTLAMTTNGLTL--------ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESIN 219 (400)
Q Consensus 148 ~~l~~~i~~~~~~~g~~~~~i~TNG~ll--------~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~ 219 (400)
..+.++++.+++. |+ .+.|+|+|..- .+.+....+.|+ .|+|+=|+-.++... ..|+. +++
T Consensus 177 ~~~~~il~~~~~~-g~-~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~-~itigSDAH~~~~vg-----~~~~~---a~~ 245 (269)
T PRK07328 177 ELYEEALDVIAAA-GL-ALEVNTAGLRKPVGEIYPSPALLRACRERGI-PVVLGSDAHRPEEVG-----FGFAE---ALA 245 (269)
T ss_pred HHHHHHHHHHHHc-CC-EEEEEchhhcCCCCCCCCCHHHHHHHHHcCC-CEEEeCCCCCHHHHh-----ccHHH---HHH
Confidence 3467888888885 77 68999976421 234577778888 489998987766532 13444 567
Q ss_pred HHHHcCCC
Q 015808 220 AAIEVGYN 227 (400)
Q Consensus 220 ~l~~~g~~ 227 (400)
.+.+.|++
T Consensus 246 ~l~~~G~~ 253 (269)
T PRK07328 246 LLKEVGYT 253 (269)
T ss_pred HHHHcCCc
Confidence 77889983
No 340
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=50.35 E-value=1.9e+02 Score=25.89 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=49.7
Q ss_pred hhHHHHHHHhhhcCCCceEEEEecCcchhhh-HHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 148 KDIEEACFHLSKLKGLKTLAMTTNGLTLARK-LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 148 ~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~-~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
....+.|.... .|+ .-.+.|-|+.+++. +..|.......|.+.+|+ |+. +-.-+.+.++.+.+.|+
T Consensus 117 EGymDVIsl~q--aGi-~naVAslGTALT~~q~~lLkr~~~~~Iil~~D~-D~A---------G~~Aa~r~~~~L~~~G~ 183 (218)
T TIGR00646 117 EGDFDWLAFRK--AGI-LNCLPLCGLTISDKQMKFFKQKKIEKIFICFDN-DFA---------GKNAAANLEEILKKAGF 183 (218)
T ss_pred ecHHHHHHHHH--CCC-CeEEEcCchHhHHHHHHHHhccCCCEEEEEeCC-CHH---------HHHHHHHHHHHHHHCCC
Confidence 33566776554 377 55678999988754 666655446799999999 332 24666777888888888
Q ss_pred CcEEEEEEEec
Q 015808 227 NPVKVNCVVMR 237 (400)
Q Consensus 227 ~~v~i~~~v~~ 237 (400)
.+. ++..+
T Consensus 184 -~v~--vv~lP 191 (218)
T TIGR00646 184 -ITK--VIEIK 191 (218)
T ss_pred -eEE--EEeCC
Confidence 543 34444
No 341
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=50.26 E-value=51 Score=31.05 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEE--E--------------------------CCCccchhhHHHHHHHhhhcCCCc
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRL--T--------------------------GGEPTVRKDIEEACFHLSKLKGLK 164 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~--~--------------------------GGEPll~~~l~~~i~~~~~~~g~~ 164 (400)
.+..++.+.++++|+.+...+...+.+ + +|..+...++.++++++++. |+
T Consensus 9 aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~r-gI- 86 (303)
T cd02742 9 SRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAAR-GI- 86 (303)
T ss_pred cccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHc-CC-
Confidence 457899999999999998876554433 2 13445557799999999985 88
Q ss_pred eEE
Q 015808 165 TLA 167 (400)
Q Consensus 165 ~~~ 167 (400)
.|.
T Consensus 87 ~vi 89 (303)
T cd02742 87 EVI 89 (303)
T ss_pred EEE
Confidence 444
No 342
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=49.95 E-value=48 Score=31.59 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRL 139 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~ 139 (400)
.+..++.+.++++|+.+...+...+.+
T Consensus 10 aR~~~~~~~ik~~id~ma~~K~N~lhl 36 (326)
T cd06564 10 GRKYYSMDFLKDIIKTMSWYKMNDLQL 36 (326)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 456789999999999998877666555
No 343
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=49.94 E-value=1.7e+02 Score=25.35 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEE
Q 015808 124 RLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 124 ~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~ 191 (400)
+.++.+.+.|...|.++++.+ .+..+.++.+++. ++ .+.+..+.....+.+..+.. +.+.|.
T Consensus 70 ~~~~~~~~~gadgv~vh~~~~---~~~~~~~~~~~~~-g~-~~~~~~~~~t~~e~~~~~~~-~~d~i~ 131 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEAS---EHIHRLLQLIKDL-GA-KAGIVLNPATPLEFLEYVLP-DVDLVL 131 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCc---hhHHHHHHHHHHc-CC-cEEEEECCCCCHHHHHHHHh-hCCEEE
Confidence 457777789999999998764 3456677777764 65 44454333333455555543 355544
No 344
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=49.91 E-value=2.4e+02 Score=26.97 Aligned_cols=130 Identities=19% Similarity=0.303 Sum_probs=72.2
Q ss_pred hCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhh--------------------HHHHHHcCCCeE
Q 015808 131 TSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK--------------------LPKLKESGLTSV 190 (400)
Q Consensus 131 ~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~--------------------~~~l~~~g~~~i 190 (400)
+.|+..+.+-=|.-=-...+.++++.+++. |+ .+.|-.|.-.|++. ++.+-+.++..|
T Consensus 93 ~~g~~k~RINPGNig~~~~v~~vVe~Ak~~-g~-piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i 170 (361)
T COG0821 93 ECGVDKVRINPGNIGFKDRVREVVEAAKDK-GI-PIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDI 170 (361)
T ss_pred hcCcceEEECCcccCcHHHHHHHHHHHHHc-CC-CEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence 344555555322221112456666666653 55 45555554333221 223345577788
Q ss_pred EEecCCCCH----HHHHHhhcC-------------CCH---HHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHH
Q 015808 191 NISLDTLVP----AKFEFLTRR-------------KGH---EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 250 (400)
Q Consensus 191 ~iSldg~~~----~~~~~ir~~-------------~~~---~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~ 250 (400)
.||+.+.+. +.|+.+... ..+ =+---+|-.|+..|+ -=++++.++. .-.+|+.--.+.
T Consensus 171 ~iS~K~Sdv~~~v~aYr~lA~~~dyPLHLGvTEAG~~~~G~VkSa~alg~LL~eGI-GDTIRVSLt~-~P~~EV~V~~eI 248 (361)
T COG0821 171 KVSVKASDVQLMVAAYRLLAKRCDYPLHLGVTEAGMGFKGIVKSAAALGALLSEGI-GDTIRVSLTA-DPVEEVKVAQEI 248 (361)
T ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCcccceecccCcccceehHHHHHHHHHHhcC-CceEEEecCC-CchhhhHHHHHH
Confidence 888887653 334433211 112 233346677888898 5677887876 467888888888
Q ss_pred HHhCCCeEEEEeee
Q 015808 251 TRDRPINIRFIEFM 264 (400)
Q Consensus 251 ~~~~gv~~~~~~~~ 264 (400)
++.+|+.-.-+++.
T Consensus 249 LqslglR~~~v~~i 262 (361)
T COG0821 249 LQSLGLRSRGVEVI 262 (361)
T ss_pred HHHhCccccCceEE
Confidence 88888754444443
No 345
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=49.55 E-value=1.7e+02 Score=25.11 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=28.7
Q ss_pred EEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecC
Q 015808 136 KIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNG 172 (400)
Q Consensus 136 ~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG 172 (400)
...+.|.+.-+.+++.++++.+++. |+ .+.|.||.
T Consensus 36 ~~~~~~~~~~l~pGv~elL~~Lk~~-G~-~l~I~Sn~ 70 (174)
T TIGR01685 36 IIDKSGTEVTLIKEVRDVLQTLKDA-GT-YLATASWN 70 (174)
T ss_pred EEeCCCCEEEEcccHHHHHHHHHHC-CC-EEEEEeCC
Confidence 3445677888889999999999984 88 78999976
No 346
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=49.44 E-value=2.5e+02 Score=26.99 Aligned_cols=138 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHH-------HhCCCCEEEEECC---------Cccchh-------------hH-HHHHHHhhhcCCC
Q 015808 114 PQLLSLNEILRLAYLF-------VTSGVDKIRLTGG---------EPTVRK-------------DI-EEACFHLSKLKGL 163 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~-------~~~g~~~i~~~GG---------EPll~~-------------~l-~~~i~~~~~~~g~ 163 (400)
...||.++|.++++.+ .+.|.+.|.|+++ -|..+. ++ .++++.+++.-|.
T Consensus 128 ~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 128 PKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Q ss_pred ceEEEEe---------cCcchhhhH---HHHHHcC-CCeEEEecCCCCHH------HHHHhhcCCCHHHHHHHHHHHHHc
Q 015808 164 KTLAMTT---------NGLTLARKL---PKLKESG-LTSVNISLDTLVPA------KFEFLTRRKGHEKVMESINAAIEV 224 (400)
Q Consensus 164 ~~~~i~T---------NG~ll~~~~---~~l~~~g-~~~i~iSldg~~~~------~~~~ir~~~~~~~v~~~i~~l~~~ 224 (400)
.+.+.. +|.-+++.+ +.|.+.| ++.|.||--..... .-....+.+.+-...+.++...
T Consensus 208 -~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-- 284 (343)
T cd04734 208 -DFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV-- 284 (343)
T ss_pred -CCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--
Q ss_pred CCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEE
Q 015808 225 GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 261 (400)
Q Consensus 225 g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~ 261 (400)
++ +|.++ | +..+.+++.+.+.+-+++...+
T Consensus 285 ~i-pvi~~-----G-~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 285 DL-PVFHA-----G-RIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred CC-CEEee-----C-CCCCHHHHHHHHHcCCCCeeee
No 347
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=49.23 E-value=2.4e+02 Score=26.77 Aligned_cols=137 Identities=16% Similarity=0.116 Sum_probs=80.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEe
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 193 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iS 193 (400)
...++.++..++++.+.+.|+..|.+.. |-..++..+..+.+........ +..-+....+.+....+.+++.+.+.
T Consensus 14 ~~~~~~~~ki~i~~~l~~~Gv~~iE~g~--p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~ 89 (344)
T TIGR02146 14 GANFSTEQKIEIAKALDEFGIDYIEVTH--PAASKQSRIDIEIIASLGLKAN--IVTHIRCRLDDAKVAVELGVDGIDIF 89 (344)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCHHHHHHHHHHHhcCCCcE--EEEECCCCHHHHHHHHHCCcCEEEEE
Confidence 4558899999999999999999888765 5455544434444443211111 22222222344566667788776665
Q ss_pred cCCCCHHHHHHhhcCCC----HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCe
Q 015808 194 LDTLVPAKFEFLTRRKG----HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 257 (400)
Q Consensus 194 ldg~~~~~~~~ir~~~~----~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~ 257 (400)
.-. .+.+....-... .+.+...++.+.+.|+ .+.+...-.-....+.+.++++.+.+.+.+
T Consensus 90 ~~~--s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~-~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~ 154 (344)
T TIGR02146 90 FGT--SKLLRIAEHRSDAKSILESARETIEYAKSAGL-EVRFSAEDTFRSELADLLSIYETVGVFGVD 154 (344)
T ss_pred Eec--CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCCCHHHHHHHHHHHHHCCCC
Confidence 533 223222211122 5678888999999988 665554332213446677777777776654
No 348
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.00 E-value=2.4e+02 Score=26.65 Aligned_cols=83 Identities=17% Similarity=0.273 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHHH-------hCCCCEEEEECCCc---------cch-------------hh-HHHHHHHhhhcC-
Q 015808 113 KPQLLSLNEILRLAYLFV-------TSGVDKIRLTGGEP---------TVR-------------KD-IEEACFHLSKLK- 161 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~-------~~g~~~i~~~GGEP---------ll~-------------~~-l~~~i~~~~~~~- 161 (400)
..+.||.++|..+++.+. +.|.+.|.|.+|.. ..+ .+ +.++++.+++.-
T Consensus 127 ~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 127 PPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG 206 (327)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC
Confidence 457799999999887653 46889999987633 221 12 367888887653
Q ss_pred -CCceEEEEecCc-------chh---hhHHHHHHcCCCeEEEecCC
Q 015808 162 -GLKTLAMTTNGL-------TLA---RKLPKLKESGLTSVNISLDT 196 (400)
Q Consensus 162 -g~~~~~i~TNG~-------ll~---~~~~~l~~~g~~~i~iSldg 196 (400)
++ .+.+--|+. ..+ +.+..|.+.|++.|.+|--.
T Consensus 207 ~d~-~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 207 PDF-PVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred CCc-eEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 22 344433321 122 23466778899999988644
No 349
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=48.91 E-value=3.5e+02 Score=28.59 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=66.8
Q ss_pred hHHHHHHHhhhcCCCceEEEEecCc--ch--hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc
Q 015808 149 DIEEACFHLSKLKGLKTLAMTTNGL--TL--ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV 224 (400)
Q Consensus 149 ~l~~~i~~~~~~~g~~~~~i~TNG~--ll--~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~ 224 (400)
.+.++|+-+++. ++. ..--|+ +- ++......++|+.+| |++|+.-+++. |+ .++-..+.++
T Consensus 94 ~ideii~iak~~-~vd---avHPGYGFLSErsdFA~av~~AGi~fi-----GPspeVi~~mG-----DK-v~AR~~Ai~a 158 (1176)
T KOG0369|consen 94 AIDEIISIAKKH-NVD---AVHPGYGFLSERSDFAQAVQDAGIRFI-----GPSPEVIDSMG-----DK-VAARAIAIEA 158 (1176)
T ss_pred hHHHHHHHHHHc-CCC---eecCCccccccchHHHHHHHhcCceEe-----CCCHHHHHHhh-----hH-HHHHHHHHHc
Confidence 367888888875 552 223343 32 245577778887655 56688776652 22 2333455677
Q ss_pred CCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 015808 225 GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 288 (400)
Q Consensus 225 g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 288 (400)
|+ ++.-. ++| ..+..++..+|.++.|..+.+-.- ++|..-.....-+.+++.+.+.+
T Consensus 159 gV-pvVPG---Tpg-Pitt~~EA~eF~k~yG~PvI~KAA--yGGGGRGmRvVr~~e~vee~f~R 215 (1176)
T KOG0369|consen 159 GV-PVVPG---TPG-PITTVEEALEFVKEYGLPVIIKAA--YGGGGRGMRVVRSGEDVEEAFQR 215 (1176)
T ss_pred CC-CccCC---CCC-CcccHHHHHHHHHhcCCcEEEeec--ccCCCcceEEeechhhHHHHHHH
Confidence 87 54222 233 456788899999999988755443 33332222233344444444443
No 350
>smart00642 Aamy Alpha-amylase domain.
Probab=48.76 E-value=70 Score=27.16 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEEecC---------------------CChhHHHHHHHHHHhCCCeE
Q 015808 208 RKGHEKVMESINAAIEVGYNPVKVNCVVMRG---------------------FNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 208 ~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~---------------------~n~~el~~l~~~~~~~gv~~ 258 (400)
.++|+.+.+.+..+++.|+..|.+.-+.... -+.+++.++++.+++.|+.+
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~v 86 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKV 86 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEE
Confidence 3458888888888888887444444332111 03467888888888888764
No 351
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=48.74 E-value=1.5e+02 Score=28.08 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCcc------------c-hhh-HHHHHHHhhhcCCCceEEEEec-Cc-----chhh
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPT------------V-RKD-IEEACFHLSKLKGLKTLAMTTN-GL-----TLAR 177 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPl------------l-~~~-l~~~i~~~~~~~g~~~~~i~TN-G~-----ll~~ 177 (400)
+.+++.+.+..+.+.|...|.+..|-|. + +++ +.++++.+++.-++ .+.+-.. |. ...+
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~-pv~vKir~g~~~~~~~~~~ 151 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDI-PVTVKIRIGWDDAHINAVE 151 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCC-CEEEEEEcccCCCcchHHH
Confidence 6889999998888889899988766653 3 355 46888888765455 4544332 21 1224
Q ss_pred hHHHHHHcCCCeEEEe
Q 015808 178 KLPKLKESGLTSVNIS 193 (400)
Q Consensus 178 ~~~~l~~~g~~~i~iS 193 (400)
.+..+.+.|++.|.++
T Consensus 152 ~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 152 AARIAEDAGAQAVTLH 167 (319)
T ss_pred HHHHHHHhCCCEEEEE
Confidence 4567778899988885
No 352
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.61 E-value=2.2e+02 Score=26.12 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=58.6
Q ss_pred HHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCC-CeEEEecCCCCHHH
Q 015808 123 LRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL-TSVNISLDTLVPAK 201 (400)
Q Consensus 123 ~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~-~~i~iSldg~~~~~ 201 (400)
.+.++.+.+.|+..|.+.. +|+ .+..++++.+++. |+. ..+.-+.+...+.+..+.+..- .-+.+|+.|.+-..
T Consensus 105 e~f~~~~~~aGvdgviipD-lp~--ee~~~~~~~~~~~-gl~-~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~ 179 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVAD-LPL--EESGDLVEAAKKH-GVK-PIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGAR 179 (256)
T ss_pred HHHHHHHHHcCCCEEEECC-CCh--HHHHHHHHHHHHC-CCc-EEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCc
Confidence 4456666777877777763 443 4466777777775 773 3333344333455555554422 13445666653221
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC-hhHHHHHHH
Q 015808 202 FEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN-DDEICDFVE 249 (400)
Q Consensus 202 ~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n-~~el~~l~~ 249 (400)
- .--..+.+.++.+++.--.++. +.-|.+ .+++..+.+
T Consensus 180 ~------~~~~~~~~~i~~lr~~~~~pi~----vgfGI~~~e~~~~~~~ 218 (256)
T TIGR00262 180 N------RAASALNELVKRLKAYSAKPVL----VGFGISKPEQVKQAID 218 (256)
T ss_pred c------cCChhHHHHHHHHHhhcCCCEE----EeCCCCCHHHHHHHHH
Confidence 0 0124567777777765211332 333443 566666554
No 353
>PRK13753 dihydropteroate synthase; Provisional
Probab=48.09 E-value=2.1e+02 Score=26.67 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEEC--CCccchh-----hH---HHHHHHhhhcCCCceEEEEecCcchhhhHHH
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVRK-----DI---EEACFHLSKLKGLKTLAMTTNGLTLARKLPK 181 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~~-----~l---~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~ 181 (400)
.....++.+.+.+-+.++.+.|..-|.+.| ..|-..+ ++ ..+++.+++. ++ .++|.|-= .+.++.
T Consensus 17 DGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-~~-~ISIDT~~---~~va~~ 91 (279)
T PRK13753 17 DESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ-MH-RVSIDSFQ---PETQRY 91 (279)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-CC-cEEEECCC---HHHHHH
Confidence 455668999999999989899977676655 4454331 34 4777777764 55 68887732 455677
Q ss_pred HHHcCCCeEEEecCCC
Q 015808 182 LKESGLTSVNISLDTL 197 (400)
Q Consensus 182 l~~~g~~~i~iSldg~ 197 (400)
-+++|.+ +.-++.|.
T Consensus 92 al~aGad-iINDVsg~ 106 (279)
T PRK13753 92 ALKRGVG-YLNDIQGF 106 (279)
T ss_pred HHHcCCC-EEEeCCCC
Confidence 7788885 66677775
No 354
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=48.00 E-value=2e+02 Score=25.63 Aligned_cols=119 Identities=13% Similarity=0.199 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEE-EecCCCC
Q 015808 120 NEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN-ISLDTLV 198 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~-iSldg~~ 198 (400)
+.-.+.++.+.+.|...|+|+= |.+ .++.++++++++. |. ...+.-|....-+.+..+++. ++.|. .|++-..
T Consensus 68 ~~p~~~i~~~~~~gad~i~~H~-Ea~--~~~~~~l~~ik~~-g~-k~GlalnP~Tp~~~i~~~l~~-~D~vlvMtV~PGf 141 (220)
T PRK08883 68 KPVDRIIPDFAKAGASMITFHV-EAS--EHVDRTLQLIKEH-GC-QAGVVLNPATPLHHLEYIMDK-VDLILLMSVNPGF 141 (220)
T ss_pred CCHHHHHHHHHHhCCCEEEEcc-cCc--ccHHHHHHHHHHc-CC-cEEEEeCCCCCHHHHHHHHHh-CCeEEEEEecCCC
Confidence 3455567777888988888875 221 3467888999985 88 688888876555667777765 56444 3444321
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHc----CCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeE
Q 015808 199 PAKFEFLTRRKGHEKVMESINAAIEV----GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 199 ~~~~~~ir~~~~~~~v~~~i~~l~~~----g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
.|.+-....++.|+.+++. |. .+.+.+.-|.|.+.+.++.+ .|++.
T Consensus 142 -------gGq~fi~~~lekI~~l~~~~~~~~~---~~~I~vdGGI~~eni~~l~~----aGAd~ 191 (220)
T PRK08883 142 -------GGQSFIPHTLDKLRAVRKMIDESGR---DIRLEIDGGVKVDNIREIAE----AGADM 191 (220)
T ss_pred -------CCceecHhHHHHHHHHHHHHHhcCC---CeeEEEECCCCHHHHHHHHH----cCCCE
Confidence 1111134444555555443 33 23444566788777776655 46654
No 355
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=47.77 E-value=1.4e+02 Score=27.86 Aligned_cols=127 Identities=20% Similarity=0.303 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCCEE---EEECCCccchhhHHHHHHHhhhcCCC--ceEEEEecCcch----h---hhH-HHHHHcCCC
Q 015808 122 ILRLAYLFVTSGVDKI---RLTGGEPTVRKDIEEACFHLSKLKGL--KTLAMTTNGLTL----A---RKL-PKLKESGLT 188 (400)
Q Consensus 122 i~~ii~~~~~~g~~~i---~~~GGEPll~~~l~~~i~~~~~~~g~--~~~~i~TNG~ll----~---~~~-~~l~~~g~~ 188 (400)
..+.+....+.|.+.| .++|-|...- +.|+. .++ ..+.|+|--... + +.+ ..|.+.|++
T Consensus 30 ~~~av~~Al~~Gyr~IDTA~~YgnE~~VG----~aI~~----s~v~ReelFittKvw~~~~~~~~~~~a~e~Sl~rLg~d 101 (280)
T COG0656 30 AVRAVRAALELGYRLIDTAEIYGNEEEVG----EAIKE----SGVPREELFITTKVWPSDLGYDETLKALEASLKRLGLD 101 (280)
T ss_pred HHHHHHHHHHhCcceEecHhHhcCHHHHH----HHHHh----cCCCHHHeEEEeecCCccCCcchHHHHHHHHHHHhCCC
Confidence 5555655666685554 4677554443 33333 232 156777733221 1 223 445666777
Q ss_pred eEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEEeeecC
Q 015808 189 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPF 266 (400)
Q Consensus 189 ~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p~ 266 (400)
+|-+-+=...... ....+..++++++.+.+.|. ++..=..+++.++++++++. ......++.++|.|+
T Consensus 102 yvDLyLiHwP~~~-----~~~~~~etw~alE~l~~~G~----ir~IGVSNF~~~~L~~l~~~-~~~~p~~NQIe~hp~ 169 (280)
T COG0656 102 YVDLYLIHWPVPN-----KYVVIEETWKALEELVDEGL----IRAIGVSNFGVEHLEELLSL-AKVKPAVNQIEYHPY 169 (280)
T ss_pred ceeEEEECCCCCc-----cCccHHHHHHHHHHHHhcCC----ccEEEeeCCCHHHHHHHHHh-cCCCCceEEEEeccC
Confidence 6666554442111 01116788888888888886 22222224677777777776 332234555666664
No 356
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=47.53 E-value=2.2e+02 Score=25.80 Aligned_cols=118 Identities=16% Similarity=0.269 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEE----------CCCccc-hhh-HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCC
Q 015808 120 NEILRLAYLFVTSGVDKIRLT----------GGEPTV-RKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 187 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~----------GGEPll-~~~-l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~ 187 (400)
+++..++. +.....|+|. ||==+. +.+ +.++++.+++. |+ .+++.-+.. .+.++.-.+.|.
T Consensus 73 ~emi~ia~---~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~-gI-~VSLFiDP~--~~qi~~A~~~GA 145 (237)
T TIGR00559 73 EEMIRIAE---EIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAA-GI-EVSLFIDAD--KDQISAAAEVGA 145 (237)
T ss_pred HHHHHHHH---HcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHC-CC-EEEEEeCCC--HHHHHHHHHhCc
Confidence 34444444 3445566663 443332 233 78899999885 88 788765542 466777788888
Q ss_pred CeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHH
Q 015808 188 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 250 (400)
Q Consensus 188 ~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~ 250 (400)
+.|-+.--.+-. .+..-.....++++.++.+.+.+.|+ .+....|.|++.+..+...
T Consensus 146 d~VELhTG~YA~-a~~~~~~~~el~~i~~aa~~A~~lGL-----~VnAGHgLny~Nv~~i~~~ 202 (237)
T TIGR00559 146 DRIEIHTGPYAN-AYNKKEMAEELQRIVKASVHAHSLGL-----KVNAGHGLNYHNVKYFAEI 202 (237)
T ss_pred CEEEEechhhhc-CCCchhHHHHHHHHHHHHHHHHHcCC-----EEecCCCCCHHhHHHHHhC
Confidence 888776433211 11100000126777777777777776 3344556788888776653
No 357
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.46 E-value=2.2e+02 Score=25.79 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCCEEEEEC--CCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCC
Q 015808 121 EILRLAYLFVTSGVDKIRLTG--GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLV 198 (400)
Q Consensus 121 ~i~~ii~~~~~~g~~~i~~~G--GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~ 198 (400)
...+.++.+.+.|+..|.+.. =|. ..+..++++.+++. |+ ...+..|.....+.+..+.+..-..+-+|+.+..
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~--~~~~~~~~~~~~~~-Gl-~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~ 164 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDY--PDDLEKYVEIIKNK-GL-KPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPAT 164 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCc--HHHHHHHHHHHHHc-CC-CEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCC
Confidence 445567777789999999953 121 24577889999985 88 4555555544446666666653334545776643
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC-ChhHHHHHHH
Q 015808 199 PAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGF-NDDEICDFVE 249 (400)
Q Consensus 199 ~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~-n~~el~~l~~ 249 (400)
-. .--..+.+.++.+++... .. ...+.-|. |.+++..+++
T Consensus 165 g~--------~~~~~~~~~i~~lr~~~~-~~--~i~v~gGI~~~e~i~~~~~ 205 (244)
T PRK13125 165 GV--------PLPVSVERNIKRVRNLVG-NK--YLVVGFGLDSPEDARDALS 205 (244)
T ss_pred CC--------CchHHHHHHHHHHHHhcC-CC--CEEEeCCcCCHHHHHHHHH
Confidence 11 112445557777776532 11 12344455 6666666554
No 358
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=47.44 E-value=2.3e+02 Score=26.12 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCcc---------chhhHHHHHHHhhhcCCCceEEEEec------CcchhhhH
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPT---------VRKDIEEACFHLSKLKGLKTLAMTTN------GLTLARKL 179 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPl---------l~~~l~~~i~~~~~~~g~~~~~i~TN------G~ll~~~~ 179 (400)
...+..++...+..+.+.|+++|...+|+|- -..+-.++++.+++..+...+.+..+ ....++.+
T Consensus 68 r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~ 147 (272)
T TIGR00676 68 IGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDI 147 (272)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHH
Q ss_pred HHHH---HcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHH
Q 015808 180 PKLK---ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 180 ~~l~---~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~ 249 (400)
..|. ++|.+ .-|+-=.++ .+.+.+-++.+++.|+ .+-|...+++=.+...+..+..
T Consensus 148 ~~L~~K~~aGA~-f~iTQ~~fd------------~~~~~~~~~~~~~~gi-~~PIi~Gi~p~~s~k~~~~~~~ 206 (272)
T TIGR00676 148 ENLKRKVDAGAD-YAITQLFFD------------NDDYYRFVDRCRAAGI-DVPIIPGIMPITNFKQLLRFAE 206 (272)
T ss_pred HHHHHHHHcCCC-eEeeccccC------------HHHHHHHHHHHHHcCC-CCCEecccCCcCCHHHHHHHHh
No 359
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=47.34 E-value=1.3e+02 Score=28.11 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEE----CCCccchhhH-HHHHHHhhhcCCCceEEEEecC
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLT----GGEPTVRKDI-EEACFHLSKLKGLKTLAMTTNG 172 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~----GGEPll~~~l-~~~i~~~~~~~g~~~~~i~TNG 172 (400)
..-..|+++|..-..+..+.|-..+.++ .|.|++.++. .+.++.+++..+-.-+.++|-+
T Consensus 22 PalP~TP~qIA~~a~~aa~AGAai~HlHvRp~dG~pt~d~~~yr~~l~rIr~~~~D~vin~ttg~ 86 (298)
T COG3246 22 PALPVTPDQIASDAIAAAKAGAAILHLHVRPEDGRPTLDPEAYREVLERIRAAVGDAVINLTTGE 86 (298)
T ss_pred CCCCCCHHHHHHHHHHHHhcCcceEEEEecCCCCCcccCHHHHHHHHHHHHccCCCeEEEecccc
Confidence 4456899999999999989886555554 4999999995 6999999986333244555543
No 360
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=46.96 E-value=2.2e+02 Score=25.71 Aligned_cols=90 Identities=14% Similarity=0.250 Sum_probs=57.6
Q ss_pred HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcE
Q 015808 150 IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPV 229 (400)
Q Consensus 150 l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v 229 (400)
+.++++.+++. |+ .+++.-... .+.++.-.+.|.+.|-+.--.+- +.+..-....-++++.++.+.+.+.|+
T Consensus 112 l~~~i~~l~~~-gI-~VSLFiDPd--~~qi~~A~~~GAd~VELhTG~Ya-~a~~~~~~~~el~~i~~aa~~a~~~GL--- 183 (234)
T cd00003 112 LKPIIERLKDA-GI-RVSLFIDPD--PEQIEAAKEVGADRVELHTGPYA-NAYDKAEREAELERIAKAAKLARELGL--- 183 (234)
T ss_pred HHHHHHHHHHC-CC-EEEEEeCCC--HHHHHHHHHhCcCEEEEechhhh-cCCCchhHHHHHHHHHHHHHHHHHcCC---
Confidence 78889999885 88 677765552 36677777888888777643321 111110001127788888888888877
Q ss_pred EEEEEEecCCChhHHHHHHH
Q 015808 230 KVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 230 ~i~~~v~~~~n~~el~~l~~ 249 (400)
.+....|.|++.+..+..
T Consensus 184 --~VnAGHgLny~Nv~~i~~ 201 (234)
T cd00003 184 --GVNAGHGLNYENVKPIAK 201 (234)
T ss_pred --EEecCCCCCHHHHHHHHh
Confidence 333455678888877765
No 361
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.49 E-value=1.4e+02 Score=24.72 Aligned_cols=67 Identities=24% Similarity=0.372 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEC---CCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeE
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTG---GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSV 190 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~G---GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i 190 (400)
-+++++.+.. .+..+..|.+++ |--.+ +.++++.+++. |...+.+.--|.+.++.+..|.+.|++.|
T Consensus 50 ~tp~e~v~aA---~~~dv~vIgvSsl~g~h~~l---~~~lve~lre~-G~~~i~v~~GGvip~~d~~~l~~~G~~~i 119 (143)
T COG2185 50 QTPEEAVRAA---VEEDVDVIGVSSLDGGHLTL---VPGLVEALREA-GVEDILVVVGGVIPPGDYQELKEMGVDRI 119 (143)
T ss_pred CCHHHHHHHH---HhcCCCEEEEEeccchHHHH---HHHHHHHHHHh-CCcceEEeecCccCchhHHHHHHhCccee
Confidence 4555554433 344455555554 22222 34556666664 55455555666666677777777777644
No 362
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=46.13 E-value=2.8e+02 Score=26.60 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEE-EEecCcchhhhH
Q 015808 121 EILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLA-MTTNGLTLARKL 179 (400)
Q Consensus 121 ~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~-i~TNG~ll~~~~ 179 (400)
.+.+.++.+++.|.....+.---+...++ +.++++.+.+. |...+. ..|.|.+.++.+
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~-Ga~~i~i~DT~G~~~P~~v 174 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESY-GADCVYIVDSAGAMLPDDV 174 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhc-CCCEEEEccCCCCCCHHHH
Confidence 34455555555553321111111222222 45555555543 332333 245666554443
No 363
>PRK12677 xylose isomerase; Provisional
Probab=46.06 E-value=3e+02 Score=26.97 Aligned_cols=93 Identities=20% Similarity=0.155 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCC--ccchhh------HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHc
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE--PTVRKD------IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKES 185 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGE--Pll~~~------l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~ 185 (400)
+..+++++ .++.+.+.|...|.|...+ |+..+. +.++.+.+.+ .|+.-..+++|...- ..
T Consensus 28 ~~~~~~~E---~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~-~GL~v~~v~~n~f~~-p~------- 95 (384)
T PRK12677 28 RPPLDPVE---AVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDE-TGLVVPMVTTNLFTH-PV------- 95 (384)
T ss_pred CCCCCHHH---HHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHH-cCCeeEEEecCCCCC-cc-------
Confidence 44556555 4556668888899998753 333221 4555555555 488433355664211 00
Q ss_pred CCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 186 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 186 g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
.-..++-+++++..+. ..+.+.++|+.+.+.|.
T Consensus 96 ---~~~g~lts~d~~~R~~-----Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 96 ---FKDGAFTSNDRDVRRY-----ALRKVLRNIDLAAELGA 128 (384)
T ss_pred ---ccCCcCCCCCHHHHHH-----HHHHHHHHHHHHHHhCC
Confidence 0001344444443221 25677888888888877
No 364
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=45.86 E-value=1.9e+02 Score=26.72 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCcc-------c-hhh-HHHHHHHhhhcCCCceEEEEecCcch----hhhHHHHHH
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPT-------V-RKD-IEEACFHLSKLKGLKTLAMTTNGLTL----ARKLPKLKE 184 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPl-------l-~~~-l~~~i~~~~~~~g~~~~~i~TNG~ll----~~~~~~l~~ 184 (400)
+.+++.+.++.+.+.|...|.+.-|=|. + +++ +.++++.+++..++ .+.+-.++..- .+.++.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~-pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDI-PLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCC-CEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5678888888887888887777644442 2 233 56788888764333 34433333222 233466677
Q ss_pred cCCCeEEEe
Q 015808 185 SGLTSVNIS 193 (400)
Q Consensus 185 ~g~~~i~iS 193 (400)
.|++.|.++
T Consensus 188 ~Gad~i~~~ 196 (289)
T cd02810 188 AGADGLTAI 196 (289)
T ss_pred cCCCEEEEE
Confidence 888888775
No 365
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=45.83 E-value=88 Score=27.26 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=46.0
Q ss_pred CccchhhHHHHHHHhhhcCCCceEEEEecCcchh-hhHHHH----HHcCCCeEEEecC----CCCHHHHHHhhcCC---C
Q 015808 143 EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKL----KESGLTSVNISLD----TLVPAKFEFLTRRK---G 210 (400)
Q Consensus 143 EPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~-~~~~~l----~~~g~~~i~iSld----g~~~~~~~~ir~~~---~ 210 (400)
..-+.|++.++++.+++. |+ .+.|.||+.... .....+ +...++.|..|-+ -++++.|......- .
T Consensus 92 ~~~~~~~~~~~L~~L~~~-g~-~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~ 169 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAK-GF-KTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAP 169 (211)
T ss_pred ccccChhHHHHHHHHHHC-CC-eEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCH
Confidence 344568899999999985 88 789999985432 111111 1122556655533 23345554432111 0
Q ss_pred -----HHHHHHHHHHHHHcCC
Q 015808 211 -----HEKVMESINAAIEVGY 226 (400)
Q Consensus 211 -----~~~v~~~i~~l~~~g~ 226 (400)
++.....+..++++|+
T Consensus 170 ~~~l~i~D~~~di~aA~~aG~ 190 (211)
T TIGR02247 170 EECVFLDDLGSNLKPAAALGI 190 (211)
T ss_pred HHeEEEcCCHHHHHHHHHcCC
Confidence 3555666666666666
No 366
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=45.66 E-value=2.5e+02 Score=26.06 Aligned_cols=122 Identities=11% Similarity=0.196 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEC---CCccc-hhh-HHHHHHHhhhcCCCceEEE-EecCcchhhhHHHHHHc---CCCe
Q 015808 119 LNEILRLAYLFVTSGVDKIRLTG---GEPTV-RKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLPKLKES---GLTS 189 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~~~G---GEPll-~~~-l~~~i~~~~~~~g~~~~~i-~TNG~ll~~~~~~l~~~---g~~~ 189 (400)
.+.+.++++.+++.|. .|.++- |.|+- .++ +.++++.+.+. |...+.+ .|.|...+..+..+.+. ....
T Consensus 114 l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~-G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~ 191 (280)
T cd07945 114 FADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDL-PIKRIMLPDTLGILSPFETYTYISDMVKRYPN 191 (280)
T ss_pred HHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHc-CCCEEEecCCCCCCCHHHHHHHHHHHHhhCCC
Confidence 4445555666666663 344432 44532 244 46667666664 5544443 47777766544333321 1223
Q ss_pred EEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC----hhHHHHHHHHHHh-CCC
Q 015808 190 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN----DDEICDFVELTRD-RPI 256 (400)
Q Consensus 190 i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n----~~el~~l~~~~~~-~gv 256 (400)
+.|+++..+ ++.-.+.|.-.+.++|. . .+.+++.. .- .-.+++++..++. .|+
T Consensus 192 ~~i~~H~Hn-----------d~Gla~AN~laA~~aGa-~-~vd~s~~G-lGe~aGN~~~E~~v~~L~~~~g~ 249 (280)
T cd07945 192 LHFDFHAHN-----------DYDLAVANVLAAVKAGI-K-GLHTTVNG-LGERAGNAPLASVIAVLKDKLKV 249 (280)
T ss_pred CeEEEEeCC-----------CCCHHHHHHHHHHHhCC-C-EEEEeccc-ccccccCccHHHHHHHHHHhcCC
Confidence 455555421 24555666666677776 3 24444421 11 1235555555532 454
No 367
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=45.56 E-value=2.5e+02 Score=25.85 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=48.9
Q ss_pred EEEEecCcchh----hhHHHHHHcCCCeEEEecCCCCH---------HHHHHhhcCCCHHHHHHHHHHHHHcCCC-cEEE
Q 015808 166 LAMTTNGLTLA----RKLPKLKESGLTSVNISLDTLVP---------AKFEFLTRRKGHEKVMESINAAIEVGYN-PVKV 231 (400)
Q Consensus 166 ~~i~TNG~ll~----~~~~~l~~~g~~~i~iSldg~~~---------~~~~~ir~~~~~~~v~~~i~~l~~~g~~-~v~i 231 (400)
+...|-|+--. +.+..+.+.|++.|.+.+--.+| ..++.+..+-+.+.+++.++.+++...+ ++.
T Consensus 15 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v- 93 (258)
T PRK13111 15 IPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV- 93 (258)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-
Confidence 44556665321 22355666677766666544332 3344555555677888888887744320 322
Q ss_pred EEEEecCCCh---hHHHHHHHHHHhCCCeEEEE
Q 015808 232 NCVVMRGFND---DEICDFVELTRDRPINIRFI 261 (400)
Q Consensus 232 ~~~v~~~~n~---~el~~l~~~~~~~gv~~~~~ 261 (400)
++.-.|. -.++++++.+++.|++-..+
T Consensus 94 ---lm~Y~N~i~~~G~e~f~~~~~~aGvdGvii 123 (258)
T PRK13111 94 ---LMTYYNPIFQYGVERFAADAAEAGVDGLII 123 (258)
T ss_pred ---EEecccHHhhcCHHHHHHHHHHcCCcEEEE
Confidence 2211232 24667777777777754333
No 368
>PRK09936 hypothetical protein; Provisional
Probab=45.54 E-value=2.6e+02 Score=26.17 Aligned_cols=142 Identities=14% Similarity=0.194 Sum_probs=79.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEE--EC-CC-ccchhh--HHHHHHHhhhcCCCceEEE------------EecCcc
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRL--TG-GE-PTVRKD--IEEACFHLSKLKGLKTLAM------------TTNGLT 174 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~--~G-GE-Pll~~~--l~~~i~~~~~~~g~~~~~i------------~TNG~l 174 (400)
+...++.+++.++++.++..|++++.+ ++ || .+--.+ +...++.+.+. |+ .+.+ ..||.-
T Consensus 31 ~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~-Gl-~v~vGL~~Dp~y~q~~~~d~~~ 108 (296)
T PRK09936 31 RDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQA-GL-KLVVGLYADPEFFMHQKQDGAA 108 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHc-CC-EEEEcccCChHHHHHHhcCchh
Confidence 445799999999999999999987655 44 55 444333 78888888875 77 3433 234443
Q ss_pred hhhhHHHHH-----------H-cC--CCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHH-cCCCcEEEEEEEecCC
Q 015808 175 LARKLPKLK-----------E-SG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE-VGYNPVKVNCVVMRGF 239 (400)
Q Consensus 175 l~~~~~~l~-----------~-~g--~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~-~g~~~v~i~~~v~~~~ 239 (400)
++..+...+ . .+ +...-|+.+- ++-++..--++..+-..+.++..... .+. ++.|.+-...+.
T Consensus 109 ~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~El-Dd~~W~~~~rR~~L~~~L~~~~~~l~~~~k-Pv~ISay~~g~~ 186 (296)
T PRK09936 109 LESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAEL-DDLNWRDEARRQPLLTWLNAAQRLIDVSAK-PVHISAFFAGNM 186 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeecc-chhcccCHHHHHHHHHHHHHHHHhCCCCCC-CeEEEeecccCC
Confidence 332222111 1 11 2345555544 22222211111112333333322221 124 788887665555
Q ss_pred ChhHHHHHHHHHHhCCCeE
Q 015808 240 NDDEICDFVELTRDRPINI 258 (400)
Q Consensus 240 n~~el~~l~~~~~~~gv~~ 258 (400)
+.+.+...++.+...++.+
T Consensus 187 sP~~l~~Wl~~l~~~~l~V 205 (296)
T PRK09936 187 SPDGYRQWLEQLKATGVNV 205 (296)
T ss_pred ChHHHHHHHHHHhhcCCeE
Confidence 6677888888777777765
No 369
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=45.38 E-value=1.1e+02 Score=27.97 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=32.4
Q ss_pred HHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEec
Q 015808 125 LAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 194 (400)
Q Consensus 125 ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSl 194 (400)
.++.+.++|+..|.=+||.|.....+..+-+.+....+. +.+.--| +-.+.+..|...|+..+..|-
T Consensus 133 al~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~~--~Im~GgG-V~~~Nv~~l~~tG~~~~H~s~ 199 (248)
T PRK11572 133 ALKQLADLGVARILTSGQQQDAEQGLSLIMELIAASDGP--IIMAGAG-VRLSNLHKFLDAGVREVHSSA 199 (248)
T ss_pred HHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCCC--EEEeCCC-CCHHHHHHHHHcCCCEEeeCC
Confidence 344555567667766777766543333332222222222 2232222 334455555566666666553
No 370
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=45.20 E-value=1.5e+02 Score=23.19 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=50.8
Q ss_pred EEEecCcchhhhHHHHHHcCCCe-EEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHH
Q 015808 167 AMTTNGLTLARKLPKLKESGLTS-VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEIC 245 (400)
Q Consensus 167 ~i~TNG~ll~~~~~~l~~~g~~~-i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~ 245 (400)
.+...--.+-+.+..|-+.|++. ...-..|.+|..+.-+.-....+.+++.|+.+.+. .+.|++++.. ...+.++
T Consensus 8 klFVe~eNlGKaINaLte~GITGFyl~eYkGmSP~~wkgf~l~EDpe~ai~~I~d~s~~---aV~I~TVV~~-~~~~~i~ 83 (110)
T PF10126_consen 8 KLFVESENLGKAINALTEGGITGFYLHEYKGMSPQDWKGFLLDEDPEMAIKAINDLSEN---AVLIGTVVDE-EKVEKIE 83 (110)
T ss_pred EEEEehhHHHHHHHHHHhcCccEEEeEeecCCChHHhcCcccccCHHHHHHHHHHhccC---cEEEEEEECH-HHHHHHH
Confidence 33333334455667777888764 45668888888887665555678888877777664 4678888754 3445555
Q ss_pred HHHH
Q 015808 246 DFVE 249 (400)
Q Consensus 246 ~l~~ 249 (400)
+.++
T Consensus 84 ~~i~ 87 (110)
T PF10126_consen 84 KLIK 87 (110)
T ss_pred HHHH
Confidence 5444
No 371
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=45.19 E-value=87 Score=26.26 Aligned_cols=31 Identities=23% Similarity=0.058 Sum_probs=24.7
Q ss_pred ccchhhHHHHHHHhhhcCCCceEEEEecCcchh
Q 015808 144 PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA 176 (400)
Q Consensus 144 Pll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~ 176 (400)
.-+.|++.++++.+++. |+ .+.+.||+....
T Consensus 84 ~~~~~g~~~~l~~l~~~-g~-~~~i~Tn~~~~~ 114 (183)
T TIGR01509 84 LKPLPGVEPLLEALRAR-GK-KLALLTNSPRDH 114 (183)
T ss_pred CccCcCHHHHHHHHHHC-CC-eEEEEeCCchHH
Confidence 34568899999999885 88 789999987543
No 372
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=45.04 E-value=2.8e+02 Score=28.16 Aligned_cols=108 Identities=22% Similarity=0.335 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHhC-----CCCEEEEECCCc-cchhhHHHHHHHhhhcCCCce--EEEEe-cCcc---------hh
Q 015808 115 QLLSLNEILRLAYLFVTS-----GVDKIRLTGGEP-TVRKDIEEACFHLSKLKGLKT--LAMTT-NGLT---------LA 176 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~-----g~~~i~~~GGEP-ll~~~l~~~i~~~~~~~g~~~--~~i~T-NG~l---------l~ 176 (400)
..++.+++.++++.+.+. ++..+++..|.| ++.++ .++.+++. |+.. +.++| |-.. ..
T Consensus 230 t~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e---~L~~Lk~~-Gv~RISIGvQS~~d~vLk~igR~ht~e 305 (488)
T PRK08207 230 TSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEE---KLEVLKKY-GVDRISINPQTMNDETLKAIGRHHTVE 305 (488)
T ss_pred cCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHH---HHHHHHhc-CCCeEEEcCCcCCHHHHHHhCCCCCHH
Confidence 346789999999887653 345678877887 44444 45555553 5543 34444 1111 11
Q ss_pred ---hhHHHHHHcCCCeEEEecC-CCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q 015808 177 ---RKLPKLKESGLTSVNISLD-TLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV 235 (400)
Q Consensus 177 ---~~~~~l~~~g~~~i~iSld-g~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v 235 (400)
+.+..+.+.|+..|++.+= |.. +.+.+.+.+.++.+.+.++..+.+....
T Consensus 306 ~v~~ai~~ar~~Gf~~In~DLI~GLP---------gEt~ed~~~tl~~l~~L~pd~isv~~L~ 359 (488)
T PRK08207 306 DIIEKFHLAREMGFDNINMDLIIGLP---------GEGLEEVKHTLEEIEKLNPESLTVHTLA 359 (488)
T ss_pred HHHHHHHHHHhCCCCeEEEEEEeCCC---------CCCHHHHHHHHHHHHhcCcCEEEEEece
Confidence 2345566677765544422 321 1347888899999999988667776643
No 373
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=44.99 E-value=1e+02 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhCCCCEEEEEC
Q 015808 121 EILRLAYLFVTSGVDKIRLTG 141 (400)
Q Consensus 121 ~i~~ii~~~~~~g~~~i~~~G 141 (400)
+...+++.+.+.|+..|.+++
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 139 ETLELAKALEDAGASALTVHG 159 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECC
Confidence 333334444444444444444
No 374
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=44.73 E-value=2.4e+02 Score=25.56 Aligned_cols=117 Identities=17% Similarity=0.275 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEE----------CCCccc-h-hhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCC
Q 015808 120 NEILRLAYLFVTSGVDKIRLT----------GGEPTV-R-KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 187 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~----------GGEPll-~-~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~ 187 (400)
+++.+++.++ ....++|. ||==+. + ..+.++++.+++. |+ .+++.-+.. .+.++.-.+.|.
T Consensus 74 ~e~~~ia~~~---kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~-gI-rvSLFiDP~--~~qi~~A~~~Ga 146 (239)
T PF03740_consen 74 EEMVDIALKV---KPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDA-GI-RVSLFIDPD--PEQIEAAKELGA 146 (239)
T ss_dssp HHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHT-T--EEEEEE-S---HHHHHHHHHTT-
T ss_pred HHHHHHHHhC---CcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhC-CC-EEEEEeCCC--HHHHHHHHHcCC
Confidence 4455555444 35567774 343222 2 3378999999985 88 788765552 366777788898
Q ss_pred CeEEEecCCCCHHHHHHhhcCCC--HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHH
Q 015808 188 TSVNISLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 188 ~~i~iSldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~ 249 (400)
+.|-+.--.+ .+.++.-..... |+++.++.+.+.+.|+ .+....|.|++.+..+.+
T Consensus 147 d~VELhTG~y-A~a~~~~~~~~~ell~~l~~aa~~a~~lGL-----~VnAGHgL~y~N~~~i~~ 204 (239)
T PF03740_consen 147 DRVELHTGPY-ANAFDDAEEAEEELLERLRDAARYAHELGL-----GVNAGHGLNYDNVRPIAA 204 (239)
T ss_dssp SEEEEETHHH-HHHSSHHHHHHHHHHHHHHHHHHHHHHTT------EEEEETT--TTTHHHHHT
T ss_pred CEEEEehhHh-hhhcCCHHHHHHHHHHHHHHHHHHHHHcCC-----EEecCCCCCHHHHHHHHh
Confidence 8887763221 111111011111 5777788888888887 333455778877777654
No 375
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=44.72 E-value=1.9e+02 Score=25.88 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEC-CCccchhh-HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcC-CCeEE-Eec
Q 015808 119 LNEILRLAYLFVTSGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG-LTSVN-ISL 194 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~~~G-GEPll~~~-l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g-~~~i~-iSl 194 (400)
.++....++.+.+.|...|++++ +. .+ +.+.++.+++. |. .+.+.-|.....+.+..+++.. ++.|. .++
T Consensus 74 ~~~p~~~i~~~~~~Gad~itvH~ea~----~~~~~~~l~~ik~~-G~-~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v 147 (228)
T PTZ00170 74 VSNPEKWVDDFAKAGASQFTFHIEAT----EDDPKAVARKIREA-GM-KVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTV 147 (228)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccCC----chHHHHHHHHHHHC-CC-eEEEEECCCCCHHHHHHHHccchhhhHHhhhc
Confidence 34455667888889999999987 32 23 66788888875 76 6788777655445565555222 34332 222
Q ss_pred CCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEE
Q 015808 195 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 259 (400)
Q Consensus 195 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~ 259 (400)
+-. ..|...-...++.++.+++.-. . +...+..|.|.+.+.++.+ .|+++.
T Consensus 148 ~pG-------~~gq~~~~~~~~ki~~~~~~~~-~--~~I~VdGGI~~~ti~~~~~----aGad~i 198 (228)
T PTZ00170 148 EPG-------FGGQSFMHDMMPKVRELRKRYP-H--LNIQVDGGINLETIDIAAD----AGANVI 198 (228)
T ss_pred ccC-------CCCcEecHHHHHHHHHHHHhcc-c--CeEEECCCCCHHHHHHHHH----cCCCEE
Confidence 210 0011112455666677766522 2 3455677888876665544 577643
No 376
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=44.57 E-value=2.6e+02 Score=25.82 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEECCC-----ccchhh-HHHHHHHhhhcCCCceEE-EEecCcchhhhHHHHHHc---CCC
Q 015808 119 LNEILRLAYLFVTSGVDKIRLTGGE-----PTVRKD-IEEACFHLSKLKGLKTLA-MTTNGLTLARKLPKLKES---GLT 188 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~~~GGE-----Pll~~~-l~~~i~~~~~~~g~~~~~-i~TNG~ll~~~~~~l~~~---g~~ 188 (400)
.+.+...++.+++.|. .|.++ .| +-..++ +.++++.+.+. |...+. ..|.|...++.+..+.+. .+.
T Consensus 118 ~~~~~~~i~~ak~~G~-~v~~~-~~~~~d~~~~~~~~~~~~~~~~~~~-g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 118 LAMIRDSVAYLKSHGR-EVIFD-AEHFFDGYKANPEYALATLKAAAEA-GADWLVLCDTNGGTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred HHHHHHHHHHHHHcCC-eEEEe-EEeccccCCCCHHHHHHHHHHHHhC-CCCEEEEecCCCCCCHHHHHHHHHHHHHhCC
Confidence 4555666667777774 34442 22 112344 46777777664 554444 358888776555433321 233
Q ss_pred eEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 189 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 189 ~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
.+.|++++.+ ++.-.+.|.-.+.++|.
T Consensus 195 ~~~l~~H~Hn-----------d~Gla~An~laA~~aGa 221 (273)
T cd07941 195 GVPLGIHAHN-----------DSGLAVANSLAAVEAGA 221 (273)
T ss_pred CCeeEEEecC-----------CCCcHHHHHHHHHHcCC
Confidence 3666666532 23445555555566777
No 377
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.47 E-value=1.7e+02 Score=26.80 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCccch-----------hhHHHHHHHhhhcCCCceEEEEecCc-ch--hhhHHHHH
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPTVR-----------KDIEEACFHLSKLKGLKTLAMTTNGL-TL--ARKLPKLK 183 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPll~-----------~~l~~~i~~~~~~~g~~~~~i~TNG~-ll--~~~~~~l~ 183 (400)
..+.+.+.++....+|+..|.+.|+..... ..+.++++.+.+. |+ .+.+.+-+. .+ .+.+..++
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-gv-~l~lE~~~~~~~~~~~~~~~l~ 169 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAA-QV-MLAVEIMDTPFMNSISKWKKWD 169 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHh-CC-EEEEEecCccccCCHHHHHHHH
Confidence 466788888888999999999876532111 1255666666664 88 788877432 22 24455555
Q ss_pred H-cCCCeEEEecCCC
Q 015808 184 E-SGLTSVNISLDTL 197 (400)
Q Consensus 184 ~-~g~~~i~iSldg~ 197 (400)
+ .+-..+.+-+|..
T Consensus 170 ~~v~~~~~~~~~D~~ 184 (284)
T PRK13210 170 KEIDSPWLTVYPDVG 184 (284)
T ss_pred HHcCCCceeEEecCC
Confidence 4 3446788888885
No 378
>PLN02433 uroporphyrinogen decarboxylase
Probab=44.38 E-value=2.9e+02 Score=26.42 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=34.7
Q ss_pred hCCCCEEEEEC--CCccchhh---------HHHHHHHhhhcC-CCceEEEEecCcchhhhHHHHHHcCCCeEEEecCC
Q 015808 131 TSGVDKIRLTG--GEPTVRKD---------IEEACFHLSKLK-GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDT 196 (400)
Q Consensus 131 ~~g~~~i~~~G--GEPll~~~---------l~~~i~~~~~~~-g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg 196 (400)
+.|...+.+.- +. ++.|+ +.++++.+++.. +. .+.+...|.. ..+..+.+.|.+ .+|+|.
T Consensus 190 eaGa~~i~i~d~~~~-~lsp~~f~ef~~P~~k~i~~~i~~~~~~~-~~ilh~cG~~--~~~~~~~~~~~~--~i~~d~ 261 (345)
T PLN02433 190 DAGAQVVQIFDSWAG-HLSPVDFEEFSKPYLEKIVDEVKARHPDV-PLILYANGSG--GLLERLAGTGVD--VIGLDW 261 (345)
T ss_pred HcCCCEEEEecCccc-cCCHHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEeCCCH--HHHHHHHhcCCC--EEEcCC
Confidence 46877666542 22 45443 346666776532 33 4566666753 556888888887 445554
No 379
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.36 E-value=1.2e+02 Score=28.63 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEC
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTG 141 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~G 141 (400)
+.++...+++.+.+.|+..|.+++
T Consensus 226 ~~~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 226 TLEEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC
Confidence 445555555555555555555544
No 380
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=44.14 E-value=58 Score=27.55 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=23.7
Q ss_pred ccchhhHHHHHHHhhhcCCCceEEEEecCcc
Q 015808 144 PTVRKDIEEACFHLSKLKGLKTLAMTTNGLT 174 (400)
Q Consensus 144 Pll~~~l~~~i~~~~~~~g~~~~~i~TNG~l 174 (400)
+.+.|++.++++.+++. |+ .+.|.||+..
T Consensus 86 ~~~~pg~~~~L~~L~~~-g~-~~~i~s~~~~ 114 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKN-NI-KIALASASKN 114 (185)
T ss_pred cccCccHHHHHHHHHHC-CC-eEEEEeCCcc
Confidence 34679999999999985 88 7899998754
No 381
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=43.46 E-value=82 Score=30.25 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECC
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGG 142 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GG 142 (400)
++.++...+++.+.+.|+..|.+++|
T Consensus 224 ~~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 34555555555555555555555554
No 382
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=43.22 E-value=1.8e+02 Score=29.16 Aligned_cols=114 Identities=9% Similarity=0.165 Sum_probs=59.6
Q ss_pred EEECCCccchhhHHHHHHHhhhcCCCceEEEEecCc--chhhhHHHHHH------------cCCCeEEEecCCCCHHHHH
Q 015808 138 RLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL--TLARKLPKLKE------------SGLTSVNISLDTLVPAKFE 203 (400)
Q Consensus 138 ~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~--ll~~~~~~l~~------------~g~~~i~iSldg~~~~~~~ 203 (400)
.++|||--|...+.++.+...+ +. -+.|.|... ++-+++..+.+ .+...|.|+-.|+.-..
T Consensus 66 ~VfGG~~~L~~~I~~~~~~~~~-p~--~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~-- 140 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARRYPD-LR--VIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSM-- 140 (454)
T ss_pred eEECcHHHHHHHHHHHHHhcCC-CC--EEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCH--
Confidence 4567776666666666655422 12 245555442 23344433322 13445666655553211
Q ss_pred HhhcCCCHHHHHHHHH-HHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEE
Q 015808 204 FLTRRKGHEKVMESIN-AAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 261 (400)
Q Consensus 204 ~ir~~~~~~~v~~~i~-~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~ 261 (400)
. .+|+.+++++- .+...+-++-.||..-.. .+..++.++.+++.+.|+++..+
T Consensus 141 -~---~G~~~a~~ali~~~~~~~~~~~~VNii~~~-~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 141 -V---TGYDEAVRSVVKTIAKKGAPSGKLNVFTGW-VNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred -H---HHHHHHHHHHHHHhcccCCCCCcEEEECCC-CChHHHHHHHHHHHHcCCCEEEe
Confidence 1 23777776554 333332212335544221 35578899999999999987644
No 383
>PRK15452 putative protease; Provisional
Probab=42.69 E-value=1.8e+02 Score=29.19 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=50.2
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC-ChhHHHHHHHHHHhCC
Q 015808 177 RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGF-NDDEICDFVELTRDRP 255 (400)
Q Consensus 177 ~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~-n~~el~~l~~~~~~~g 255 (400)
+.+...+++|.+.|-+..+.+.-... ...-+.+.+-++++.+.+.|. ++.+.+...... ..+.+.+.++.+.+.|
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~edl~eav~~ah~~g~-kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNHENLALGINEAHALGK-KFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhh---ccCCCHHHHHHHHHHHHHcCC-EEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 56677778899999998887643211 111236788889999999998 776665444421 1134555566666777
Q ss_pred CeE
Q 015808 256 INI 258 (400)
Q Consensus 256 v~~ 258 (400)
++-
T Consensus 90 vDg 92 (443)
T PRK15452 90 PDA 92 (443)
T ss_pred CCE
Confidence 753
No 384
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=42.69 E-value=2.4e+02 Score=27.61 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=51.3
Q ss_pred CCCCCCHHHHHHHHHHHH-------hCCCCEEEEEC---CC-------ccc-------------hhh-HHHHHHHhhhcC
Q 015808 113 KPQLLSLNEILRLAYLFV-------TSGVDKIRLTG---GE-------PTV-------------RKD-IEEACFHLSKLK 161 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~-------~~g~~~i~~~G---GE-------Pll-------------~~~-l~~~i~~~~~~~ 161 (400)
..+.||.++|..+++.+. +.|.+.|.|++ |- |.. +.. +.++++.+++.-
T Consensus 136 ~p~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~ 215 (382)
T cd02931 136 TCRELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARC 215 (382)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhc
Confidence 347799999999988664 46888888876 33 222 122 368888888653
Q ss_pred CCc-eEEEEec---------------------Ccchhh---hHHHHHHcCCCeEEEecCC
Q 015808 162 GLK-TLAMTTN---------------------GLTLAR---KLPKLKESGLTSVNISLDT 196 (400)
Q Consensus 162 g~~-~~~i~TN---------------------G~ll~~---~~~~l~~~g~~~i~iSldg 196 (400)
+-. .+.+--| |..+++ .++.|.+.|++.|.||.-.
T Consensus 216 g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 216 GEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred CCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 311 2332211 222332 2356667789999998543
No 385
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=42.68 E-value=2.5e+02 Score=25.13 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEE-EecCCC
Q 015808 119 LNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN-ISLDTL 197 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~-iSldg~ 197 (400)
.+...+.++.+.+.|...|+|+-= ..+++.++++++++. |. ...+.-|....-+.+..+++. ++.|. .|++=.
T Consensus 70 V~~p~~~i~~fa~agad~It~H~E---~~~~~~r~i~~Ik~~-G~-kaGv~lnP~Tp~~~i~~~l~~-vD~VllMsVnPG 143 (220)
T COG0036 70 VENPDRYIEAFAKAGADIITFHAE---ATEHIHRTIQLIKEL-GV-KAGLVLNPATPLEALEPVLDD-VDLVLLMSVNPG 143 (220)
T ss_pred cCCHHHHHHHHHHhCCCEEEEEec---cCcCHHHHHHHHHHc-CC-eEEEEECCCCCHHHHHHHHhh-CCEEEEEeECCC
Confidence 455677788888999899998753 456678899999985 88 688888876665677777765 66544 344321
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHcCC-CcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEEe
Q 015808 198 VPAKFEFLTRRKGHEKVMESINAAIEVGY-NPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 262 (400)
Q Consensus 198 ~~~~~~~ir~~~~~~~v~~~i~~l~~~g~-~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~ 262 (400)
..|..-.+.+++.|+.+++.-. +. .+.+-+.-|.|.+.+..+.+ .|+++...-
T Consensus 144 -------fgGQ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~----AGad~~VaG 197 (220)
T COG0036 144 -------FGGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAA----AGADVFVAG 197 (220)
T ss_pred -------CcccccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHH----cCCCEEEEE
Confidence 1111114788888888887733 12 44555666778777666544 577754443
No 386
>PRK00915 2-isopropylmalate synthase; Validated
Probab=42.60 E-value=3.9e+02 Score=27.33 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=28.3
Q ss_pred HcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 184 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 184 ~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
.+|.+.|..|+.|.-+. .|....+.++-+++..... |+ . .+.+.+.+.++.+++.+
T Consensus 219 ~aGa~~Vd~Tv~GlGER-----aGNa~lE~vv~~L~~~~~~~g~-~--------~~idl~~l~~~s~~v~~ 275 (513)
T PRK00915 219 EAGARQVECTINGIGER-----AGNAALEEVVMALKTRKDIYGV-E--------TGINTEEIYRTSRLVSQ 275 (513)
T ss_pred HhCCCEEEEEeeccccc-----ccCccHHHHHHHHHhhhcccCC-C--------CCcCHHHHHHHHHHHHH
Confidence 35566666666665421 1222266666666654433 43 1 13455556555555544
No 387
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=42.41 E-value=29 Score=19.68 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.7
Q ss_pred eEEEccCCeEEeccCCCC
Q 015808 332 RLRLLADGNFKVCLFGPS 349 (400)
Q Consensus 332 ~l~I~~dG~v~pC~~~~~ 349 (400)
.++++++|+||.|..++.
T Consensus 6 gvav~~~g~i~VaD~~n~ 23 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNH 23 (28)
T ss_dssp EEEEETTSEEEEEECCCT
T ss_pred EEEEeCCCCEEEEECCCC
Confidence 478999999999986543
No 388
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=42.37 E-value=1.9e+02 Score=26.59 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=19.4
Q ss_pred HHHHHcCCCeEEEecCCCCH---------HHHHHhhcCCCHHHHHHHHHHHH
Q 015808 180 PKLKESGLTSVNISLDTLVP---------AKFEFLTRRKGHEKVMESINAAI 222 (400)
Q Consensus 180 ~~l~~~g~~~i~iSldg~~~---------~~~~~ir~~~~~~~v~~~i~~l~ 222 (400)
..|.+.|.+.|.|.+-..+| ...+.+..+-+.+.+++.++.++
T Consensus 31 ~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir 82 (259)
T PF00290_consen 31 KALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIR 82 (259)
T ss_dssp HHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Confidence 44445555555555433221 22233444444666666666666
No 389
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=41.85 E-value=3e+02 Score=25.73 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=49.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEEC--CCccch-----hh---HHHHHHHhhhcCCCceEEEEecCcchhhhHHH
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVR-----KD---IEEACFHLSKLKGLKTLAMTTNGLTLARKLPK 181 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~-----~~---l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~ 181 (400)
......+.+.+.+-+.++.+.|..-|.+.| ..|-.. .+ +..+++.+++..++ .++|.|.= .+.++.
T Consensus 30 dgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~---~~va~~ 105 (282)
T PRK11613 30 DGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSK---PEVIRE 105 (282)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCC---HHHHHH
Confidence 455667899999999888899977676654 223332 13 44566777654455 68888743 355666
Q ss_pred HHHcCCCeE
Q 015808 182 LKESGLTSV 190 (400)
Q Consensus 182 l~~~g~~~i 190 (400)
-+++|.+.|
T Consensus 106 AL~~GadiI 114 (282)
T PRK11613 106 SAKAGAHII 114 (282)
T ss_pred HHHcCCCEE
Confidence 677787654
No 390
>PLN02540 methylenetetrahydrofolate reductase
Probab=41.83 E-value=4.2e+02 Score=27.48 Aligned_cols=103 Identities=10% Similarity=0.123 Sum_probs=67.7
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCChhHHHHHHHHHHhCC
Q 015808 177 RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFNDDEICDFVELTRDRP 255 (400)
Q Consensus 177 ~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~~v~~~~n~~el~~l~~~~~~~g 255 (400)
+.+++|...+...|.|.--+. +.+.++.++....+++. |+ .+....+... .|.+++.+.+..+.+.|
T Consensus 19 ~~~~rl~~~~P~FisVT~gAg----------Gst~~~Tl~la~~lq~~~Gi-e~i~HLTCrd-~n~~~L~~~L~~a~~~G 86 (565)
T PLN02540 19 ERMDRMVAHGPLFCDITWGAG----------GSTADLTLDIANRMQNMICV-ETMMHLTCTN-MPVEKIDHALETIKSNG 86 (565)
T ss_pred HHHHHHhccCCCEEEeCCCCC----------CCcHHHHHHHHHHHHHhcCC-CeeEEeeecC-CCHHHHHHHHHHHHHCC
Confidence 456777777777888775542 22367888888888876 98 7777766654 78899999999999999
Q ss_pred Ce-EEEEeeecCCC-CCCcc--cCCCCHHHHHHHHHHhCC
Q 015808 256 IN-IRFIEFMPFDG-NVWNV--KKLVPYAEMLDTVVKKFP 291 (400)
Q Consensus 256 v~-~~~~~~~p~~~-~~~~~--~~~~~~~e~~~~i~~~~~ 291 (400)
+. +-.+.=-|... ..+.. ..+....++++.+++.+.
T Consensus 87 IrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~g 126 (565)
T PLN02540 87 IQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYG 126 (565)
T ss_pred CCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCC
Confidence 84 43333223222 22211 223346678888887653
No 391
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=41.79 E-value=2.9e+02 Score=25.55 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeE
Q 015808 180 PKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 180 ~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
+.+.+.|.+.|.+.+..+.......+ ....+.+.+.++.+++. ++ ++.+.+.. +.+.+++.++++.+.+.|++.
T Consensus 118 ~~~~~~G~d~ielN~~cP~~~~~~~~--~~~~~~~~eiv~~vr~~~~~-pv~vKl~~--~~~~~~~~~~a~~l~~~Gad~ 192 (289)
T cd02810 118 RKIERAGAKALELNLSCPNVGGGRQL--GQDPEAVANLLKAVKAAVDI-PLLVKLSP--YFDLEDIVELAKAAERAGADG 192 (289)
T ss_pred HHHHHhCCCEEEEEcCCCCCCCCccc--ccCHHHHHHHHHHHHHccCC-CEEEEeCC--CCCHHHHHHHHHHHHHcCCCE
Confidence 44445556666665554321110000 11245555555555554 56 66666543 346678999999999988864
Q ss_pred E
Q 015808 259 R 259 (400)
Q Consensus 259 ~ 259 (400)
.
T Consensus 193 i 193 (289)
T cd02810 193 L 193 (289)
T ss_pred E
Confidence 3
No 392
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=41.68 E-value=1.2e+02 Score=27.57 Aligned_cols=109 Identities=20% Similarity=0.243 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECC---Cccchhh-HHHHHHHhhhcCCCceEEEEecCcc-hh-hhH----HHHHH
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGG---EPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLT-LA-RKL----PKLKE 184 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GG---EPll~~~-l~~~i~~~~~~~g~~~~~i~TNG~l-l~-~~~----~~l~~ 184 (400)
..++.+.+++.++.+.++|+ -...|| |-+..++ +.++++++++. |+..+.| ++|++ ++ +.. +.+.+
T Consensus 49 ~l~~~~~l~eki~l~~~~gV--~v~~GGtl~E~a~~q~~~~~yl~~~k~l-Gf~~IEi-SdGti~l~~~~r~~~I~~~~~ 124 (244)
T PF02679_consen 49 ALYPEEILKEKIDLAHSHGV--YVYPGGTLFEVAYQQGKFDEYLEECKEL-GFDAIEI-SDGTIDLPEEERLRLIRKAKE 124 (244)
T ss_dssp GGSTCHHHHHHHHHHHCTT---EEEE-HHHHHHHHHTT-HHHHHHHHHHC-T-SEEEE---SSS---HHHHHHHHHHHCC
T ss_pred eecCHHHHHHHHHHHHHcCC--eEeCCcHHHHHHHhcChHHHHHHHHHHc-CCCEEEe-cCCceeCCHHHHHHHHHHHHH
Confidence 34667788889998888883 334454 3333344 89999999996 9876776 66765 33 222 33334
Q ss_pred cCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEE
Q 015808 185 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN 232 (400)
Q Consensus 185 ~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~ 232 (400)
.|+ ..+|=-|..+.. .. ...+-+..++.++...++|-..|.+.
T Consensus 125 ~Gf--~v~~EvG~K~~~-~~--~~~~~~~~i~~~~~dLeAGA~~ViiE 167 (244)
T PF02679_consen 125 EGF--KVLSEVGKKDPE-SD--FSLDPEELIEQAKRDLEAGADKVIIE 167 (244)
T ss_dssp TTS--EEEEEES-SSHH-HH--TT--CCHHHHHHHHHHHHTECEEEE-
T ss_pred CCC--EEeecccCCCch-hc--ccCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 454 233333322111 11 11124788999999999997434333
No 393
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=41.61 E-value=93 Score=27.44 Aligned_cols=65 Identities=23% Similarity=0.377 Sum_probs=32.4
Q ss_pred HHHHHHHhCCCCEEEEECCCccchhhH---HHHHHHhhhcCCCceEEEEecCcchhhhHHHHHH-cCCCeEEEe
Q 015808 124 RLAYLFVTSGVDKIRLTGGEPTVRKDI---EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKE-SGLTSVNIS 193 (400)
Q Consensus 124 ~ii~~~~~~g~~~i~~~GGEPll~~~l---~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~-~g~~~i~iS 193 (400)
+.++.+.++|+..|.=+||.+.....+ .+++++... .+ .|.--|-+-.+.+..|.+ .|+..+..|
T Consensus 131 ~al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~--~i---~Im~GgGv~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 131 EALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKG--RI---EIMPGGGVRAENVPELVEETGVREIHGS 199 (201)
T ss_dssp HHHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTT--SS---EEEEESS--TTTHHHHHHHHT-SEEEET
T ss_pred HHHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCC--Cc---EEEecCCCCHHHHHHHHHhhCCeEEeec
Confidence 344555556777777778776665443 344433221 22 333333233455666654 677766655
No 394
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=41.53 E-value=3.2e+02 Score=26.03 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCCCEEEEE--CCCccchhhHHHHHHHhhhcCC-CceEEEEecCcchh-hhHHHHHHcCCCeEEEecCCC
Q 015808 122 ILRLAYLFVTSGVDKIRLT--GGEPTVRKDIEEACFHLSKLKG-LKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTL 197 (400)
Q Consensus 122 i~~ii~~~~~~g~~~i~~~--GGEPll~~~l~~~i~~~~~~~g-~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iSldg~ 197 (400)
....++.+.+.|+..|.+. .|.+ ....++++.+++... + .+.+ |...+ +....+.+.|.+.|.+.+-+.
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~---~~~~~~i~~ik~~~p~v-~Vi~---G~v~t~~~A~~l~~aGaD~I~vg~g~G 167 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHS---VYVIEMIKFIKKKYPNV-DVIA---GNVVTAEAARDLIDAGADGVKVGIGPG 167 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCc---HHHHHHHHHHHHHCCCc-eEEE---CCCCCHHHHHHHHhcCCCEEEECCCCC
Confidence 3445556667788877764 4666 456778888887522 3 2333 33343 667888999999999865321
Q ss_pred CHHHHHHhh--cCCCHHHHHHHHHHHHHcCC
Q 015808 198 VPAKFEFLT--RRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 198 ~~~~~~~ir--~~~~~~~v~~~i~~l~~~g~ 226 (400)
......... +.+.+..+.+..+.+.+.++
T Consensus 168 ~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~v 198 (325)
T cd00381 168 SICTTRIVTGVGVPQATAVADVAAAARDYGV 198 (325)
T ss_pred cCcccceeCCCCCCHHHHHHHHHHHHhhcCC
Confidence 111111111 22236655555555555566
No 395
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=41.34 E-value=1.7e+02 Score=26.58 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEECCCccch-hhHHHHHHHhhhcCCCc--eEEEEecCcch
Q 015808 119 LNEILRLAYLFVTSGVDKIRLTGGEPTVR-KDIEEACFHLSKLKGLK--TLAMTTNGLTL 175 (400)
Q Consensus 119 ~e~i~~ii~~~~~~g~~~i~~~GGEPll~-~~l~~~i~~~~~~~g~~--~~~i~TNG~ll 175 (400)
.+.+...++.+++..+..|.++||-+.-. .+-.-+-+++.+. |+. .+.+...|...
T Consensus 67 ~~Rl~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~-GVp~e~Ii~e~~s~nT 125 (239)
T PRK10834 67 RYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAA-GVDPSDIVLDYAGFRT 125 (239)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHc-CCCHHHEEecCCCCCH
Confidence 46666777766666688999999854322 2233344444443 543 34555555433
No 396
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=41.10 E-value=1e+02 Score=29.00 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEE-------CC--------CccchhhHHHHHHHhhhcCCC
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLT-------GG--------EPTVRKDIEEACFHLSKLKGL 163 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~-------GG--------EPll~~~l~~~i~~~~~~~g~ 163 (400)
...+.+.++++++.+...+...+.++ -| .++...++.++++++++. |+
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~-gI 74 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAEL-GI 74 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHc-CC
Confidence 67899999999999999887776663 13 344456799999999985 87
No 397
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=40.77 E-value=87 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEC
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTG 141 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~G 141 (400)
++.++..++++.+.+.|+..|.+++
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 3455555555555555555555544
No 398
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=40.77 E-value=1.1e+02 Score=28.66 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHh--CCCCEEEEE------CCCccchhhHHHHHHHhhhcCCCceEEEEecCcch-------hhhH
Q 015808 115 QLLSLNEILRLAYLFVT--SGVDKIRLT------GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-------ARKL 179 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~--~g~~~i~~~------GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll-------~~~~ 179 (400)
..++++++.+.++.... ..+.-|.++ ||.|.-..++.++.+.+++. |+ .+.+. |..+ ...+
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~-gl-~lhmD--GARl~~a~~~~~~~~ 179 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREH-GL-PLHMD--GARLANAAAALGVSL 179 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHH-T--EEEEE--ETTHHHHHCHHHHHH
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhC-ce-EEEEe--hhhHHHhhhcccccH
Confidence 56999999999987654 223456664 79998888999999999986 77 67665 5444 2334
Q ss_pred HHHHHcCCCeEEEecCC
Q 015808 180 PKLKESGLTSVNISLDT 196 (400)
Q Consensus 180 ~~l~~~g~~~i~iSldg 196 (400)
.++. .++|.+.||+.=
T Consensus 180 ~e~~-~~~D~v~~~~tK 195 (290)
T PF01212_consen 180 AEIA-AGADSVSFGGTK 195 (290)
T ss_dssp HHHH-TTSSEEEEETTS
T ss_pred HHHh-hhCCEEEEEEEc
Confidence 5555 569999998753
No 399
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=40.57 E-value=1.1e+02 Score=27.11 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=23.5
Q ss_pred ccchhhHHHHHHHhhhcCCCceEEEEecCcc
Q 015808 144 PTVRKDIEEACFHLSKLKGLKTLAMTTNGLT 174 (400)
Q Consensus 144 Pll~~~l~~~i~~~~~~~g~~~~~i~TNG~l 174 (400)
.-+.+++.++++.+++. |+ .+.|.||+..
T Consensus 92 ~~~~~g~~e~L~~Lk~~-g~-~~~i~Tn~~~ 120 (224)
T PRK14988 92 AVLREDTVPFLEALKAS-GK-RRILLTNAHP 120 (224)
T ss_pred CCcCCCHHHHHHHHHhC-CC-eEEEEeCcCH
Confidence 34568899999999985 88 7999999853
No 400
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=40.41 E-value=1.8e+02 Score=23.63 Aligned_cols=69 Identities=12% Similarity=0.075 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCCEEEEECC---------------Cccchhh-HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcC
Q 015808 123 LRLAYLFVTSGVDKIRLTGG---------------EPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 186 (400)
Q Consensus 123 ~~ii~~~~~~g~~~i~~~GG---------------EPll~~~-l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g 186 (400)
.++++.+++.++..|.+..| -|-|..| |.++++.+++. |+ .+.+-.... .++. ..+..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~-Gi-rv~ay~~~~-~d~~---~~~~H 76 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHER-GI-RVPAYFDFS-WDED---AAERH 76 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHC-CC-EEEEEEeee-cChH---HHHhC
Confidence 34566777888888888543 3556666 58999999985 98 455444443 3332 23445
Q ss_pred CCeEEEecCCC
Q 015808 187 LTSVNISLDTL 197 (400)
Q Consensus 187 ~~~i~iSldg~ 197 (400)
.++..++-||-
T Consensus 77 PeW~~~~~~G~ 87 (132)
T PF14871_consen 77 PEWFVRDADGR 87 (132)
T ss_pred CceeeECCCCC
Confidence 78999999984
No 401
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=40.28 E-value=2.9e+02 Score=25.23 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEC--CCccchhh-HHHHHHHhhhcCCCceEEEEe--cCc-chhhhHHHHHHcCCCeEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTG--GEPTVRKD-IEEACFHLSKLKGLKTLAMTT--NGL-TLARKLPKLKESGLTSVN 191 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~~~-l~~~i~~~~~~~g~~~~~i~T--NG~-ll~~~~~~l~~~g~~~i~ 191 (400)
..+.+.+-++.+++.|...|.|.- -+-.+..+ +.++++.+. +. .+.+.- .-+ -..+.++.|.+.|++.|-
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~---~~-~vTFHRAfD~~~d~~~al~~l~~lG~~rIL 146 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG---PL-AVTFHRAFDMCANPLNALKQLADLGVARIL 146 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc---CC-ceEEechhhccCCHHHHHHHHHHcCCCEEE
Confidence 466777778888889999888854 23335444 456666654 33 232221 111 112457888899998888
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHH
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFV 248 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~ 248 (400)
.| |.. .+-..-++.|+.+.+..- .. + +...-|.|.+.+.++.
T Consensus 147 TS--Gg~----------~~a~~g~~~L~~lv~~a~-~~-~-Im~GgGV~~~Nv~~l~ 188 (248)
T PRK11572 147 TS--GQQ----------QDAEQGLSLIMELIAASD-GP-I-IMAGAGVRLSNLHKFL 188 (248)
T ss_pred CC--CCC----------CCHHHHHHHHHHHHHhcC-CC-E-EEeCCCCCHHHHHHHH
Confidence 77 211 112334455555555322 21 2 4455678888888874
No 402
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=40.23 E-value=1.6e+02 Score=32.95 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=54.6
Q ss_pred CEEEEEC--CCccchhhHHHHHHHhhhcCCCceEEEEecCcchh-hhHHHHH-HcCCCeEEEecCCCCHHHHHHhhcCCC
Q 015808 135 DKIRLTG--GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLK-ESGLTSVNISLDTLVPAKFEFLTRRKG 210 (400)
Q Consensus 135 ~~i~~~G--GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~-~~~~~l~-~~g~~~i~iSldg~~~~~~~~ir~~~~ 210 (400)
..|+++- |=| --++..|..|+.+.+++ +..|--|.|||- +.++..+ +.|.++|.++=..+..+ -.
T Consensus 208 ~~~t~st~hgcp--~~eie~i~~~~~~~k~~-~~~~k~nptllg~~~~r~~~~~~g~~~~~~~~~~f~~d--------l~ 276 (1012)
T TIGR03315 208 HSVTLSTMHGCP--PDEIEAICRYLLEEKGL-HTFVKLNPTLLGYKFVRDTMDEMGFDYIVLKEESFSHD--------LQ 276 (1012)
T ss_pred CceeehhccCCC--HHHHHHHHHHHHhccCC-ceEEeeCcccccHHHHHHHHHhcCCceEecchhhcccc--------cc
Confidence 3466654 444 13489999999988888 788999999995 5565544 67899998874444221 12
Q ss_pred HHHHHHHHHHHHHc
Q 015808 211 HEKVMESINAAIEV 224 (400)
Q Consensus 211 ~~~v~~~i~~l~~~ 224 (400)
|+..+.-|++|.+.
T Consensus 277 ~~~~~~~~~~l~~~ 290 (1012)
T TIGR03315 277 YEDAVAMLQRLQLL 290 (1012)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777777654
No 403
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.13 E-value=1.2e+02 Score=20.68 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=20.2
Q ss_pred EEEecCCChhHHHHHHHHHHhCCCeEEEEeee
Q 015808 233 CVVMRGFNDDEICDFVELTRDRPINIRFIEFM 264 (400)
Q Consensus 233 ~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~ 264 (400)
++++.|.+.+++..+++.+++.|+.+......
T Consensus 3 ~ll~~g~~~~el~~~l~~~r~~~~~~~~kAvl 34 (58)
T PF12646_consen 3 FLLFSGFSGEELDKFLDALRKAGIPIPLKAVL 34 (58)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCCcceEEEE
Confidence 34555677777777777777777654444433
No 404
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=40.04 E-value=1.9e+02 Score=29.12 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=47.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchh--------h---HHHHHHHhhhcCCCceEEEEecCcc
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK--------D---IEEACFHLSKLKGLKTLAMTTNGLT 174 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~--------~---l~~~i~~~~~~~g~~~~~i~TNG~l 174 (400)
...|+.+.+.+.++.+++.|+++|.=.-|+|-... + -.++|+++++..|- .+.|..-|+-
T Consensus 86 Ctn~~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGD-yF~IgVAgYP 156 (590)
T KOG0564|consen 86 CTNMPKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGD-YFCIGVAGYP 156 (590)
T ss_pred ccCccHHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCC-eEEEEeccCC
Confidence 34578999999999999999998877777765431 1 36899999988787 7888887764
No 405
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=40.02 E-value=92 Score=31.49 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEE
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMT 169 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~ 169 (400)
..+..+++...+.+....|-..+.+.||+|+++-...+.++.+.+. |+ .+.+.
T Consensus 62 ~~~~qe~i~~~l~~~a~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~-gi-~~eVV 114 (474)
T PRK07168 62 HIMRQEMINAHLLQFAKEGKIVVRLKGGDPSIFGRVGEEAETLAAA-NI-PYEIV 114 (474)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCCchHHhhHHHHHHHHHhC-CC-CEEEE
Confidence 3456777766554444567667888999999987777778877764 65 45553
No 406
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=39.95 E-value=1.6e+02 Score=32.90 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=54.2
Q ss_pred CEEEEEC--CCccchh-hHHHHHHHhhhcCCCceEEEEecCcchh-hhHHHHH-HcCCCeEEEecCCCCHHHHHHhhcCC
Q 015808 135 DKIRLTG--GEPTVRK-DIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLK-ESGLTSVNISLDTLVPAKFEFLTRRK 209 (400)
Q Consensus 135 ~~i~~~G--GEPll~~-~l~~~i~~~~~~~g~~~~~i~TNG~ll~-~~~~~l~-~~g~~~i~iSldg~~~~~~~~ir~~~ 209 (400)
..|+++- |=| | ++..|..|+.+.+++ +..|--|.|||- +.++..+ +.|.++|.++=..+..+ -
T Consensus 210 ~~~t~st~hgcp---~~eie~i~~~~~~~k~~-~~~~k~nptllg~~~~r~~~d~~g~~~~~~~~~~f~~d--------l 277 (1019)
T PRK09853 210 PSVTLSTMHGCP---PHEIEAIARYLLEEKGL-NTFVKLNPTLLGYERVREILDKMGFDYIGLKEEHFDHD--------L 277 (1019)
T ss_pred CceeehhccCCC---HHHHHHHHHHHHhccCC-ceEEeeCcccccHHHHHHHHHhcCCceEecchhhcccc--------c
Confidence 3466653 444 4 489999999988888 788999999995 5565554 57899998874444221 1
Q ss_pred CHHHHHHHHHHHHHc
Q 015808 210 GHEKVMESINAAIEV 224 (400)
Q Consensus 210 ~~~~v~~~i~~l~~~ 224 (400)
.|+..+.-|++|.+.
T Consensus 278 ~~~~a~~m~~~l~~~ 292 (1019)
T PRK09853 278 QYTDAVEMLERLMAL 292 (1019)
T ss_pred chhHHHHHHHHHHHH
Confidence 277777777777654
No 407
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=39.87 E-value=2.5e+02 Score=25.95 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEC-CCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecC
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTG-GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLD 195 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~G-GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSld 195 (400)
++.+.+.++++.+.+. +.|.+.| |.-.. --..+...+... |+ .+.+.++...+.. .......+--.|.||..
T Consensus 125 l~~~~l~~~~~~i~~A--~~I~i~G~G~S~~--~A~~l~~~l~~~-g~-~~~~~~d~~~~~~-~~~~~~~~Dl~I~iS~s 197 (292)
T PRK11337 125 LDVDEFHRAARFFYQA--RQRDLYGAGGSAA--IARDVQHKFLRI-GV-RCQAYDDAHIMLM-SAALLQEGDVVLVVSHS 197 (292)
T ss_pred cCHHHHHHHHHHHHcC--CeEEEEEecHHHH--HHHHHHHHHhhC-CC-eEEEcCCHHHHHH-HHhcCCCCCEEEEEeCC
Confidence 5566666666666554 3677777 63211 112233334432 55 3444333322211 11122222225778877
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 196 TLVPAKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 196 g~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
|.. ..+++.++.+++.|.
T Consensus 198 G~t-------------~~~~~~~~~ak~~g~ 215 (292)
T PRK11337 198 GRT-------------SDVIEAVELAKKNGA 215 (292)
T ss_pred CCC-------------HHHHHHHHHHHHCCC
Confidence 743 457788899999987
No 408
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=39.71 E-value=5.3e+02 Score=28.05 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEE---------------------CCCccc-hhhHHHHHHHhhhcCCCceEEEEecCcch--
Q 015808 120 NEILRLAYLFVTSGVDKIRLT---------------------GGEPTV-RKDIEEACFHLSKLKGLKTLAMTTNGLTL-- 175 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~---------------------GGEPll-~~~l~~~i~~~~~~~g~~~~~i~TNG~ll-- 175 (400)
|...++.+...++|+..|.++ |+-|.- +-++.++|+.+++. |. ...----|.|-
T Consensus 17 EIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~-ga-DaIhPGYGfLSEn 94 (1149)
T COG1038 17 EIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRS-GA-DAIHPGYGFLSEN 94 (1149)
T ss_pred hhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHc-CC-CeecCCcccccCC
Q ss_pred hhhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCC
Q 015808 176 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP 255 (400)
Q Consensus 176 ~~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~g 255 (400)
.+..++..++|+..| |+.+++.+.+ ..-+++...+.++|+ ++.-.+. + ..+.+++..+|+++.|
T Consensus 95 ~efA~~c~eaGI~FI-----GP~~e~ld~~------GdKv~Ar~~A~~agv-Pvipgt~---~-~~~~~ee~~~fa~~~g 158 (1149)
T COG1038 95 PEFARACAEAGITFI-----GPKPEVLDML------GDKVKARNAAIKAGV-PVIPGTD---G-PIETIEEALEFAEEYG 158 (1149)
T ss_pred HHHHHHHHHcCCEEe-----CCCHHHHHHh------ccHHHHHHHHHHcCC-CccCCCC---C-CcccHHHHHHHHHhcC
Q ss_pred CeEEEEeeecCCCCCCcccCCCCHHHHHHHHHHh
Q 015808 256 INIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKK 289 (400)
Q Consensus 256 v~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~ 289 (400)
..+..-.-.--+|..+. -.-+.+++.+.+.+.
T Consensus 159 yPvmiKA~~GGGGRGMR--~vr~~~~l~~~~~~A 190 (1149)
T COG1038 159 YPVMIKAAAGGGGRGMR--VVRSEADLAEAFERA 190 (1149)
T ss_pred CcEEEEEccCCCcccee--eecCHHHHHHHHHHH
No 409
>PRK09389 (R)-citramalate synthase; Provisional
Probab=39.69 E-value=4.2e+02 Score=26.90 Aligned_cols=93 Identities=19% Similarity=0.259 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEC--CCccchh-hHHHHHHHhhhcCCCceEEEEe-c--CcchhhhHHHHHHcCCCeEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTG--GEPTVRK-DIEEACFHLSKLKGLKTLAMTT-N--GLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~~-~l~~~i~~~~~~~g~~~~~i~T-N--G~ll~~~~~~l~~~g~~~i~ 191 (400)
+++.+.++++.+.+.|...|.|.- | .+.| ++.++++.+++..++ .+.+.+ | |.-+.. ...-..+|.+.|.
T Consensus 141 ~~~~l~~~~~~~~~~Ga~~i~l~DTvG--~~~P~~~~~lv~~l~~~~~v-~l~~H~HND~GlAvAN-alaAv~aGa~~Vd 216 (488)
T PRK09389 141 DLDFLKELYKAGIEAGADRICFCDTVG--ILTPEKTYELFKRLSELVKG-PVSIHCHNDFGLAVAN-TLAALAAGADQVH 216 (488)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCC--CcCHHHHHHHHHHHHhhcCC-eEEEEecCCccHHHHH-HHHHHHcCCCEEE
Confidence 455666666666666666666632 2 1222 244555555443333 344433 1 222212 2222345666777
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHH
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESIN 219 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~ 219 (400)
.|+.|.-+. .|....+.++-+++
T Consensus 217 ~Ti~GiGER-----aGNa~lE~lv~~L~ 239 (488)
T PRK09389 217 VTINGIGER-----AGNASLEEVVMALK 239 (488)
T ss_pred EEccccccc-----ccCccHHHHHHHHH
Confidence 777775421 12222566666554
No 410
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.61 E-value=3.4e+02 Score=25.81 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=46.6
Q ss_pred eEEEecCCCCHHHHHHhhcCCC--H-HHHHHHHHHHHHcCCCcEEEEEEE-ecCCChhHHHHHHHHHHhCCCeEEEE
Q 015808 189 SVNISLDTLVPAKFEFLTRRKG--H-EKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPINIRFI 261 (400)
Q Consensus 189 ~i~iSldg~~~~~~~~ir~~~~--~-~~v~~~i~~l~~~g~~~v~i~~~v-~~~~n~~el~~l~~~~~~~gv~~~~~ 261 (400)
.|.|.+.+. .-.+.+.||.-+ | ..+++-|+.+++.|+ .+ ..|+ +.-.+......+...+...|+.+...
T Consensus 67 EiviainA~-diE~~K~RgDlgIsYd~dV~RLID~frel~~-~v--~sVViTqyed~p~a~aF~~rLEr~Gikvy~H 139 (493)
T COG4868 67 EIVIAINAG-DIERSKARGDLGISYDQDVFRLIDKFRELDI-KV--GSVVITQYEDQPAADAFRTRLERNGIKVYLH 139 (493)
T ss_pred EEEEEEecc-chhhhhhccccCcchhHHHHHHHHHHHhcCe-ee--eeEEEEecCCChhHHHHHHHHHhcCcceEEe
Confidence 677888875 344566676544 3 689999999999988 43 4443 33223345677788888889876544
No 411
>PRK08284 precorrin 6A synthase; Provisional
Probab=39.57 E-value=99 Score=28.33 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhc--CCCceEEEE
Q 015808 120 NEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLKTLAMT 169 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~--~g~~~~~i~ 169 (400)
+.+.+.+.+....|-..+.++.|+|+++.-+..+++.+... .++ .+.+.
T Consensus 90 ~~~~~~i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~~~~i-~vevV 140 (253)
T PRK08284 90 ALYERLIAEELPDGGTGAFLVWGDPSLYDSTLRILERVRARGRVAF-DYEVI 140 (253)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCCcchhhHHHHHHHHHHhhccCCC-cEEEE
Confidence 34445555555667677888999999998887888888753 366 56653
No 412
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=39.48 E-value=1.9e+02 Score=28.30 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccc----hh------h-HHHHHHHhhhcCCCceEEEEecCcch-hhhHHHHHH
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTV----RK------D-IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKE 184 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll----~~------~-l~~~i~~~~~~~g~~~~~i~TNG~ll-~~~~~~l~~ 184 (400)
++.++...+++.+.+.|+..|.++||.... .+ . +.++++.+++.-++ -+..||.+. .+.+...++
T Consensus 249 ~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~---pvi~~G~i~~~~~~~~~l~ 325 (382)
T cd02931 249 RDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDV---PVIMAGRMEDPELASEAIN 325 (382)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCC---CEEEeCCCCCHHHHHHHHH
Confidence 678899999999989999999999875211 11 1 24566667665444 345666665 356777777
Q ss_pred cC-CCeEEEecCC-CCHHHHHHhhc
Q 015808 185 SG-LTSVNISLDT-LVPAKFEFLTR 207 (400)
Q Consensus 185 ~g-~~~i~iSldg-~~~~~~~~ir~ 207 (400)
.| .+.|.+.=-. .+|+..++++.
T Consensus 326 ~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 326 EGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred cCCCCeeeechHhHhCccHHHHHHc
Confidence 65 7777766221 13555555543
No 413
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=39.41 E-value=3.2e+02 Score=26.83 Aligned_cols=170 Identities=17% Similarity=0.229 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHhCC--CCEEEEECCCccchhhHHHHHHHhhhcCC-CceEEEEecCcchhhhHHHH-HHcCCCeEEE
Q 015808 117 LSLNEILRLAYLFVTSG--VDKIRLTGGEPTVRKDIEEACFHLSKLKG-LKTLAMTTNGLTLARKLPKL-KESGLTSVNI 192 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g--~~~i~~~GGEPll~~~l~~~i~~~~~~~g-~~~~~i~TNG~ll~~~~~~l-~~~g~~~i~i 192 (400)
.+.|.+++.-..+...| +..-+-+-|=|.++.++.++|++-...+- -..+.++|-+.---..+..| ....-+.|.|
T Consensus 87 fp~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~Gvli 166 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLI 166 (475)
T ss_pred CCHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEe
Confidence 67777777666555554 22333445999999888887775432110 01466655443222333333 3333445555
Q ss_pred ecCCCC--HHHHHH------------hhcCCC-HHHHHHHHHHHHHcCCCcEEEEEEEecCCCh-------hHHHHHHHH
Q 015808 193 SLDTLV--PAKFEF------------LTRRKG-HEKVMESINAAIEVGYNPVKVNCVVMRGFND-------DEICDFVEL 250 (400)
Q Consensus 193 Sldg~~--~~~~~~------------ir~~~~-~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~-------~el~~l~~~ 250 (400)
.+--.. ..+... -.+++. .+.+-+.++.++ .++ .+.+-+++.+| |. +.++++++|
T Consensus 167 PiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i-~~r~lvvINPG-NPTGqvls~e~ie~i~~f 243 (475)
T KOG0258|consen 167 PIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGI-NPRALVVINPG-NPTGQVLSEENIEGIICF 243 (475)
T ss_pred ecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHh-ccC-CceEEEEECCC-CccchhhcHHHHHHHHHH
Confidence 543321 011111 123332 677888888888 678 88888999987 53 569999999
Q ss_pred HHhCCCeEEEEeeecCCCCCCccc-CCCCHHHHHHHHHHhCC
Q 015808 251 TRDRPINIRFIEFMPFDGNVWNVK-KLVPYAEMLDTVVKKFP 291 (400)
Q Consensus 251 ~~~~gv~~~~~~~~p~~~~~~~~~-~~~~~~e~~~~i~~~~~ 291 (400)
+.+.|+-+-- ---+..+-+... .+.+....+..+...++
T Consensus 244 a~~~~l~lla--DEVYQ~Nvy~~~skFhSfKKvl~emg~~~~ 283 (475)
T KOG0258|consen 244 AAEEGLVLLA--DEVYQDNVYTTGSKFHSFKKVLHEMGNPYP 283 (475)
T ss_pred HHHcCeEEec--hHHHHhhccCCCcchHhHHHHHHHhcCccC
Confidence 9998763211 111222222222 44555555555544443
No 414
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=39.10 E-value=24 Score=26.75 Aligned_cols=69 Identities=25% Similarity=0.400 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcc-------hhhhHHHHHH
Q 015808 113 KPQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT-------LARKLPKLKE 184 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~-~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~l-------l~~~~~~l~~ 184 (400)
....++.+++.+++..++- ..-..|.++|||+....++.. +... .|. -.+.+.+++ +++.++.+.+
T Consensus 15 ~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~-~~~~---sg~--n~~~~G~ylt~~g~~~~~~d~~~i~~ 88 (93)
T PF06968_consen 15 DPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQP-LTFM---SGA--NSIMVGGYLTTSGNRSVDEDIEMIEK 88 (93)
T ss_dssp TS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHH-HHHC---CT----EEE-CSBTSSSCTSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHH-HHHh---ccc--ceeEECCccccCCCCCHHHHHHHHHH
Confidence 4566899999998876653 334589999999887776544 2222 233 234444543 3445566666
Q ss_pred cCC
Q 015808 185 SGL 187 (400)
Q Consensus 185 ~g~ 187 (400)
.|+
T Consensus 89 lG~ 91 (93)
T PF06968_consen 89 LGL 91 (93)
T ss_dssp TT-
T ss_pred cCC
Confidence 554
No 415
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=39.04 E-value=2.3e+02 Score=27.56 Aligned_cols=100 Identities=14% Similarity=0.214 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEE----EC--CCccchhhHHHHHHHhhhcCCCceEEEEecCc--ch--hhhH-----
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRL----TG--GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL--TL--ARKL----- 179 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~----~G--GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~--ll--~~~~----- 179 (400)
...+.+.+.+.++.+.+.|+..|.= +| +||.+.+-|.+.- + ..|.+.|--- .+ .+++
T Consensus 29 ~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~---R-----ekv~LaTKlp~~~~~~~edm~r~fn 100 (391)
T COG1453 29 GSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGY---R-----EKVKLATKLPSWPVKDREDMERIFN 100 (391)
T ss_pred CCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcc---c-----ceEEEEeecCCccccCHHHHHHHHH
Confidence 5578999999999999999876653 33 5666654433221 2 1566776543 22 2333
Q ss_pred HHHHHcCCCeEEEe-cCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 180 PKLKESGLTSVNIS-LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 180 ~~l~~~g~~~i~iS-ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
+.|.+.+.|++-+- |.+.+.++++++...+ +++.++++++.|.
T Consensus 101 eqLekl~~Dy~D~yliH~l~~e~~~k~~~~g----~~df~~kak~eGk 144 (391)
T COG1453 101 EQLEKLGTDYIDYYLIHGLNTETWEKIERLG----VFDFLEKAKAEGK 144 (391)
T ss_pred HHHHHhCCchhhhhhhccccHHHHHHHHccC----hHHHHHHHHhcCc
Confidence 33444566655433 5666678888876533 5666777777663
No 416
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=39.00 E-value=1.7e+02 Score=23.20 Aligned_cols=56 Identities=7% Similarity=0.013 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEec
Q 015808 115 QLLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN 171 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g-~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TN 171 (400)
..++.+++...++...+.. -..|.+.+=.=.-+-.+.++++.+++. |+..+.+.||
T Consensus 65 ~~v~~~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~a-G~~~v~l~t~ 121 (122)
T TIGR02803 65 DPVARETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQA-GYLKIGLVGL 121 (122)
T ss_pred ccCCHHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHc-CCCEEEEEec
Confidence 4478888888887765533 234666553334455689999999985 8878999887
No 417
>PRK15482 transcriptional regulator MurR; Provisional
Probab=38.94 E-value=3.2e+02 Score=25.24 Aligned_cols=91 Identities=18% Similarity=0.248 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEC-CCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEec
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLTG-GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 194 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~G-GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSl 194 (400)
.++.+++.++++.+.+.+ .|.+.| |.-.. --..+-..+.. -|. .+.....+... .........+--.|.||.
T Consensus 119 ~id~~~l~~~~~~i~~A~--~I~i~G~G~S~~--~A~~l~~~l~~-~g~-~~~~~~d~~~~-~~~~~~~~~~Dv~i~iS~ 191 (285)
T PRK15482 119 LFDYARLQKIIEVISKAP--FIQITGLGGSAL--VGRDLSFKLMK-IGY-RVACEADTHVQ-ATVSQALKKGDVQIAISY 191 (285)
T ss_pred hcCHHHHHHHHHHHHhCC--eeEEEEeChhHH--HHHHHHHHHHh-CCC-eeEEeccHhHH-HHHHhcCCCCCEEEEEeC
Confidence 356777788887776654 788888 64311 11222333333 254 34443322111 111222223322688888
Q ss_pred CCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 195 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 195 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
.|.. ..+++.++.+++.|.
T Consensus 192 sg~t-------------~~~~~~~~~a~~~g~ 210 (285)
T PRK15482 192 SGSK-------------KEIVLCAEAARKQGA 210 (285)
T ss_pred CCCC-------------HHHHHHHHHHHHCCC
Confidence 7754 457788899999987
No 418
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=38.92 E-value=3.3e+02 Score=25.44 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEC-CC-ccchhh-HHHHHHHhhhcCCCceEEEEec-CcchhhhHHHHHHcCCCeEE
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLTG-GE-PTVRKD-IEEACFHLSKLKGLKTLAMTTN-GLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~G-GE-Pll~~~-l~~~i~~~~~~~g~~~~~i~TN-G~ll~~~~~~l~~~g~~~i~ 191 (400)
..+.+.+..+++...+.+..-|.-.. |+ .....+ +..++..+.+...+ .|.+... |.- -+.+.+-++.|+++|.
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~V-PValHLDH~~~-~e~i~~ai~~GftSVM 102 (284)
T PRK12737 25 IHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNI-PLALHLDHHED-LDDIKKKVRAGIRSVM 102 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCC-HHHHHHHHHcCCCeEE
Confidence 35788999999888777754433222 22 222223 56666666655566 6776654 332 2567777888988666
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCh-----------hHHHHHHHHHHhCCCeEEE
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND-----------DEICDFVELTRDRPINIRF 260 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~-----------~el~~l~~~~~~~gv~~~~ 260 (400)
+.-...+-+. +.+.+.+.++.+...|+ .|....=-..|.+. .+.++..+|+.+.|++.--
T Consensus 103 iDgS~lp~ee--------Ni~~T~~vv~~Ah~~gv-sVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LA 173 (284)
T PRK12737 103 IDGSHLSFEE--------NIAIVKEVVEFCHRYDA-SVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLA 173 (284)
T ss_pred ecCCCCCHHH--------HHHHHHHHHHHHHHcCC-EEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEe
Confidence 6543332111 14667777888888888 66555433322221 2467888888888987544
Q ss_pred EeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 015808 261 IEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 290 (400)
Q Consensus 261 ~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 290 (400)
+.+=..+|..- ....+.+ +.++.+.+..
T Consensus 174 vaiGt~HG~y~-~~p~Ld~-~~L~~I~~~~ 201 (284)
T PRK12737 174 VAIGTAHGLYK-GEPKLDF-ERLAEIREKV 201 (284)
T ss_pred eccCccccccC-CCCcCCH-HHHHHHHHHh
Confidence 43333333211 1122333 4566666644
No 419
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=38.88 E-value=1.9e+02 Score=24.29 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=39.7
Q ss_pred cCCC-HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeE
Q 015808 207 RRKG-HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 207 ~~~~-~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
|..+ |+..-++.+.|.+.|+ +..+..+--. .+.+.+.++++.+++.|+++
T Consensus 10 GS~SD~~~mk~Aa~~L~~fgi-~ye~~VvSAH-RTPe~m~~ya~~a~~~g~~v 60 (162)
T COG0041 10 GSKSDWDTMKKAAEILEEFGV-PYEVRVVSAH-RTPEKMFEYAEEAEERGVKV 60 (162)
T ss_pred cCcchHHHHHHHHHHHHHcCC-CeEEEEEecc-CCHHHHHHHHHHHHHCCCeE
Confidence 4344 8888899999999999 8777755433 58889999999999999875
No 420
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=38.64 E-value=2.3e+02 Score=27.41 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=52.0
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEE--EEecCCChhHHHHHHHHHHhC
Q 015808 177 RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC--VVMRGFNDDEICDFVELTRDR 254 (400)
Q Consensus 177 ~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~--~v~~~~n~~el~~l~~~~~~~ 254 (400)
+.+...++.|.+.|-++.....-..+. ..-+.+.+.+.++.+.++|. ++.+.+ .+.. ...+.+.+.++.+.+.
T Consensus 17 ~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gk-k~~V~~N~~~~~-~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGK-KVYVAVNTLLHN-DELETLERYLDRLVEL 91 (347)
T ss_pred HHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCC-eEEEEecccccc-chhhHHHHHHHHHHHc
Confidence 456777778899999987643211110 01236889999999999998 554444 3333 2456678888999998
Q ss_pred CCeEEE
Q 015808 255 PINIRF 260 (400)
Q Consensus 255 gv~~~~ 260 (400)
|++...
T Consensus 92 GvDavi 97 (347)
T COG0826 92 GVDAVI 97 (347)
T ss_pred CCCEEE
Confidence 886433
No 421
>PLN02591 tryptophan synthase
Probab=38.64 E-value=2.7e+02 Score=25.48 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=34.6
Q ss_pred HHHHHcCCCeEEEecCCCCH---------HHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCh---hHHHH
Q 015808 180 PKLKESGLTSVNISLDTLVP---------AKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFND---DEICD 246 (400)
Q Consensus 180 ~~l~~~g~~~i~iSldg~~~---------~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~~v~~~~n~---~el~~ 246 (400)
..|.+.|.+.|.+.+--.+| ..++.+..+-+.+++++.++.+++. .+ ++. ++.-.|. --+++
T Consensus 23 ~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~-p~i----lm~Y~N~i~~~G~~~ 97 (250)
T PLN02591 23 RLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSC-PIV----LFTYYNPILKRGIDK 97 (250)
T ss_pred HHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC-CEE----EEecccHHHHhHHHH
Confidence 44555566655555433321 2334444444566666666666632 22 221 1111232 24556
Q ss_pred HHHHHHhCCCe
Q 015808 247 FVELTRDRPIN 257 (400)
Q Consensus 247 l~~~~~~~gv~ 257 (400)
+++.+++.|++
T Consensus 98 F~~~~~~aGv~ 108 (250)
T PLN02591 98 FMATIKEAGVH 108 (250)
T ss_pred HHHHHHHcCCC
Confidence 66666666654
No 422
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=38.17 E-value=3.2e+02 Score=25.05 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=52.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEEC--CCccch-----h---hHHHHHHHhhhcCCCceEEEEecCcchhhhHHH
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVR-----K---DIEEACFHLSKLKGLKTLAMTTNGLTLARKLPK 181 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~-----~---~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~ 181 (400)
.....++.+.+.+.+.++.+.|..-|.+.| ..|-.. . .+..+++.+++..++ .++|.|-= .+.++.
T Consensus 16 dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~-plSIDT~~---~~v~e~ 91 (257)
T cd00739 16 DGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDV-LISVDTFR---AEVARA 91 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-cEEEeCCC---HHHHHH
Confidence 445668999999999999899987777754 223222 1 245567777764455 68887732 355666
Q ss_pred HHHcCCCeEEEecCCC
Q 015808 182 LKESGLTSVNISLDTL 197 (400)
Q Consensus 182 l~~~g~~~i~iSldg~ 197 (400)
-++.|.+ +.=|+.|.
T Consensus 92 al~~G~~-iINdisg~ 106 (257)
T cd00739 92 ALEAGAD-IINDVSGG 106 (257)
T ss_pred HHHhCCC-EEEeCCCC
Confidence 6667865 44455553
No 423
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=37.84 E-value=1.1e+02 Score=29.62 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=36.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEE--------------------C----CCccchhhHHHHHHHhhhcCCC
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLT--------------------G----GEPTVRKDIEEACFHLSKLKGL 163 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~--------------------G----GEPll~~~l~~~i~~~~~~~g~ 163 (400)
-.+..++.+.++++|+.+...+...+.++ | |.-+...++.+|++++++. ||
T Consensus 10 vaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~r-gI 84 (348)
T cd06562 10 TSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLR-GI 84 (348)
T ss_pred ccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHc-CC
Confidence 35677899999999999987665554442 1 1223445689999999985 77
No 424
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=37.79 E-value=1.3e+02 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=23.0
Q ss_pred chhhHHHHHHHhhhcCCCceEEEEecCcch
Q 015808 146 VRKDIEEACFHLSKLKGLKTLAMTTNGLTL 175 (400)
Q Consensus 146 l~~~l~~~i~~~~~~~g~~~~~i~TNG~ll 175 (400)
+.|++.++++.+++. |+ .+.|.||+...
T Consensus 85 ~~~g~~e~L~~l~~~-g~-~~~i~Sn~~~~ 112 (199)
T PRK09456 85 LRPEVIAIMHKLREQ-GH-RVVVLSNTNRL 112 (199)
T ss_pred cCHHHHHHHHHHHhC-CC-cEEEEcCCchh
Confidence 468899999999985 87 78999998643
No 425
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=37.67 E-value=2.6e+02 Score=23.97 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchh---h-hHHHHHHcCCCeEEEe
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA---R-KLPKLKESGLTSVNIS 193 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~---~-~~~~l~~~g~~~i~iS 193 (400)
..|-+..+++.....+ ..|.|.||.|-....+.+.++. +.+++ .+.- .+|+.-+ + .++.+.+.+.+.|-|.
T Consensus 33 G~dl~~~l~~~~~~~~-~~vfllG~~~~v~~~~~~~l~~--~yP~l-~i~g-~~g~f~~~~~~~i~~~I~~s~~dil~Vg 107 (177)
T TIGR00696 33 GPDLMEELCQRAGKEK-LPIFLYGGKPDVLQQLKVKLIK--EYPKL-KIVG-AFGPLEPEERKAALAKIARSGAGIVFVG 107 (177)
T ss_pred hHHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHHHHH--HCCCC-EEEE-ECCCCChHHHHHHHHHHHHcCCCEEEEE
Confidence 4677777888776666 6899999998765555444433 23566 3333 3887753 2 2477778889999999
Q ss_pred cCCCCHHH
Q 015808 194 LDTLVPAK 201 (400)
Q Consensus 194 ldg~~~~~ 201 (400)
+-.+..|.
T Consensus 108 lG~PkQE~ 115 (177)
T TIGR00696 108 LGCPKQEI 115 (177)
T ss_pred cCCcHhHH
Confidence 98875544
No 426
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.61 E-value=1.2e+02 Score=29.39 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=9.1
Q ss_pred HHHHHHHhhhcCCCceEEEEe
Q 015808 150 IEEACFHLSKLKGLKTLAMTT 170 (400)
Q Consensus 150 l~~~i~~~~~~~g~~~~~i~T 170 (400)
..++++.+.+. |+..+.+++
T Consensus 237 ~~~~~~~l~~~-gvd~i~vs~ 256 (361)
T cd04747 237 LEALLAPLVDA-GVDIFHCST 256 (361)
T ss_pred HHHHHHHHHHc-CCCEEEecC
Confidence 44555555443 443444433
No 427
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=37.57 E-value=3.5e+02 Score=25.38 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCccc
Q 015808 117 LSLNEILRLAYLFVTSGVDKIRLTGGEPTV 146 (400)
Q Consensus 117 ~s~e~i~~ii~~~~~~g~~~i~~~GGEPll 146 (400)
.+..++...+..+.+.|+.+|...+|+|-.
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~ 123 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPP 123 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 588899999999999999999998888643
No 428
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.24 E-value=2.3e+02 Score=26.07 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=16.1
Q ss_pred EEEEcCcccC---CCCCCCCCCC
Q 015808 87 LRISLTERCN---LRCHYCMPPE 106 (400)
Q Consensus 87 l~i~iT~~CN---l~C~yC~~~~ 106 (400)
.++.+..+|. -.|.|||...
T Consensus 10 ~TWNP~~GC~kvS~GC~nCYA~~ 32 (261)
T PF07505_consen 10 ATWNPWTGCTKVSPGCDNCYAER 32 (261)
T ss_pred CeecCccCCCcCCCCchHhHHhh
Confidence 4578889998 4899999764
No 429
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=37.07 E-value=1.1e+02 Score=27.76 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEE
Q 015808 120 NEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMT 169 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~ 169 (400)
+++.+.+.+..+.|-..+.+++|+|+++-.+.++++.+.. ++ .+.+.
T Consensus 85 ~~~~~~i~~~~~~G~~Vv~L~~GDP~iyst~~~l~~~l~~--~i-~~evI 131 (241)
T PRK05990 85 DTSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLAP--RY-ETEVI 131 (241)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCcHHHhHHHHHHHHHhc--CC-CEEEE
Confidence 3344445455556767788899999999888778877753 55 55553
No 430
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=36.97 E-value=2.9e+02 Score=27.79 Aligned_cols=114 Identities=11% Similarity=0.157 Sum_probs=60.1
Q ss_pred EEECCCccchhhHHHHHHHhhhcCCCceEEEEecCc--chhhhHHHHHH------------cCCCeEEEecCCCCHHHHH
Q 015808 138 RLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL--TLARKLPKLKE------------SGLTSVNISLDTLVPAKFE 203 (400)
Q Consensus 138 ~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~--ll~~~~~~l~~------------~g~~~i~iSldg~~~~~~~ 203 (400)
.++|||.-|...+.++.+...+ +. -+.|.|... ++-+++..+.+ .+...|.|+-.|+.-..
T Consensus 69 vVfGG~~kL~~aI~~~~~~~~~-p~--~I~V~ttC~~eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~-- 143 (457)
T TIGR02932 69 AVFGGAKRIEEGVLTLARRYPN-LR--VIPIITTCSTETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQ-- 143 (457)
T ss_pred eEECcHHHHHHHHHHHHHhCCC-CC--EEEEECCchHHhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcH--
Confidence 4567877676666666555422 12 244544432 22344433322 14555677766653211
Q ss_pred HhhcCCCHHHHHHHHHHHH-H-cCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEE
Q 015808 204 FLTRRKGHEKVMESINAAI-E-VGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 261 (400)
Q Consensus 204 ~ir~~~~~~~v~~~i~~l~-~-~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~ 261 (400)
. .+|+.++++|-... + .+.++-.||..-.- .+..++.++.+++.+.|+++..+
T Consensus 144 -~---~G~~~a~~ali~~~~~~~~~~~~~VNii~~~-~~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 144 -V---TGYAECVKSVIKTIAAKKGEPSGKLNVFPGW-VNPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred -H---HHHHHHHHHHHHHHhhccCCCCCcEEEECCC-CChHHHHHHHHHHHHcCCCEEEE
Confidence 1 23777776655333 2 12112335543211 24567888999999999987654
No 431
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=36.97 E-value=1.7e+02 Score=24.92 Aligned_cols=67 Identities=21% Similarity=0.377 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEe
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 193 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iS 193 (400)
+.+++... .+.|...|.|=-..| .++.++++.++...+ .+.|.-.|-+-.+.+..+.+.|++.|.++
T Consensus 89 ~~ee~~ea----~~~g~d~I~lD~~~~---~~~~~~v~~l~~~~~--~v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 89 NLEEAEEA----LEAGADIIMLDNMSP---EDLKEAVEELRELNP--RVKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp SHHHHHHH----HHTT-SEEEEES-CH---HHHHHHHHHHHHHTT--TSEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred CHHHHHHH----HHhCCCEEEecCcCH---HHHHHHHHHHhhcCC--cEEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 35554443 357888888877766 557777887765432 24555556555688999999999988875
No 432
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=36.93 E-value=3.4e+02 Score=26.96 Aligned_cols=111 Identities=17% Similarity=0.232 Sum_probs=57.6
Q ss_pred EECCCccchhhHHHHHHHhhhcCCCceEEEEecCc--chhhhH----HHHHH----cCCCeEEEecCCCCHHHHHHhhcC
Q 015808 139 LTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL--TLARKL----PKLKE----SGLTSVNISLDTLVPAKFEFLTRR 208 (400)
Q Consensus 139 ~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~--ll~~~~----~~l~~----~g~~~i~iSldg~~~~~~~~ir~~ 208 (400)
++|||--|...+.++.+..+ +. -+.|.|... ++-+++ +++.+ .+...|.|+..|+.... .
T Consensus 65 VfGg~~kL~~aI~~~~~~~~--P~--~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~---~--- 134 (429)
T cd03466 65 VYGGEKNLKKGLKNVIEQYN--PE--VIGIATTCLSETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTH---V--- 134 (429)
T ss_pred EECcHHHHHHHHHHHHHhcC--CC--EEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccH---H---
Confidence 46777544444444444432 22 355555542 222333 33333 24567888888864211 1
Q ss_pred CCHHHHHHHHHH-HHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEE
Q 015808 209 KGHEKVMESINA-AIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRF 260 (400)
Q Consensus 209 ~~~~~v~~~i~~-l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~ 260 (400)
.+|+.+++.|-. +.....++-.||..-.. .+..++.++.+++.+.|+.+..
T Consensus 135 ~G~~~a~~al~~~~~~~~~~~~~VNlig~~-~~~~D~~ei~~lL~~~Gl~~~~ 186 (429)
T cd03466 135 EGYDTAVRSIVKNIAVDPDKIEKINVIAGM-MSPADIREIKEILREFGIEYIL 186 (429)
T ss_pred HHHHHHHHHHHHHhccCCCCCCcEEEECCC-CChhHHHHHHHHHHHcCCCeEE
Confidence 236777766643 22221113345543221 2456788899999999987643
No 433
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=36.76 E-value=3.3e+02 Score=24.77 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=44.4
Q ss_pred CCceEEEEecCcchhhhHHHHH-HcCCCeEEEecCCCCHHHHHHhhcCCC--HHHHHHHHHHHHHcCCCcEEEEEEEec-
Q 015808 162 GLKTLAMTTNGLTLARKLPKLK-ESGLTSVNISLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNCVVMR- 237 (400)
Q Consensus 162 g~~~~~i~TNG~ll~~~~~~l~-~~g~~~i~iSldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~~v~~- 237 (400)
|+.++.+-|-+..-++.+.++. +.| +.|.++||.-..+ ..+.|... --...+.++++.+.|. .-.+.+-+.+
T Consensus 97 G~~rViiGt~av~~p~~v~~~~~~~g-~rivv~lD~r~g~--vav~GW~e~s~~~~~~l~~~~~~~g~-~~ii~TdI~~D 172 (241)
T COG0106 97 GVARVIIGTAAVKNPDLVKELCEEYG-DRIVVALDARDGK--VAVSGWQEDSGVELEELAKRLEEVGL-AHILYTDISRD 172 (241)
T ss_pred CCCEEEEecceecCHHHHHHHHHHcC-CcEEEEEEccCCc--cccccccccccCCHHHHHHHHHhcCC-CeEEEEecccc
Confidence 5555666555543345554444 445 6777777774322 24544432 1245666677777776 4444444432
Q ss_pred ----CCChhHHHHHHHHH
Q 015808 238 ----GFNDDEICDFVELT 251 (400)
Q Consensus 238 ----~~n~~el~~l~~~~ 251 (400)
|.|.+-+.++.+..
T Consensus 173 Gtl~G~n~~l~~~l~~~~ 190 (241)
T COG0106 173 GTLSGPNVDLVKELAEAV 190 (241)
T ss_pred cccCCCCHHHHHHHHHHh
Confidence 33444445554443
No 434
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=36.64 E-value=1.3e+02 Score=27.23 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchh-hhHHHHHHcCCCeEEEe
Q 015808 120 NEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNIS 193 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~-~~~~~l~~~g~~~i~iS 193 (400)
++...+++.+.+.|+..|...++.|-...++ +.++.++ . .+-|..||-..+ +.+.+++..|.+.|.|.
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~-~~I~~i~----~-~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPGNHADL-KKIRDIS----T-ELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCCCCCcH-HHHHHhc----C-CCEEEEECCcCCHHHHHHHHHcCCCEEEEc
No 435
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=36.51 E-value=2.8e+02 Score=26.92 Aligned_cols=118 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEe-cCcchhhhHHHHHHcCCCe
Q 015808 111 TPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTT-NGLTLARKLPKLKESGLTS 189 (400)
Q Consensus 111 ~~~~~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~T-NG~ll~~~~~~l~~~g~~~ 189 (400)
....+.||.++|.+++ .+|.+..+.+++. |+.-|.|.- ||+|++..+..+....-|.
T Consensus 133 ~~~pr~mt~~eI~~ii---------------------~~f~~AA~rA~~A-GFDgVEIH~AhGYLi~qFlsp~tN~RtD~ 190 (363)
T COG1902 133 RATPRELTEEEIEEVI---------------------EDFARAARRAKEA-GFDGVEIHGAHGYLLSQFLSPLTNKRTDE 190 (363)
T ss_pred CCCCccCCHHHHHHHH---------------------HHHHHHHHHHHHc-CCCEEEEeeccchHHHHhcCCccCCCCCc
Q ss_pred EEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecC-----CChhHHHHHHHHHHhCC-CeEEEE
Q 015808 190 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRG-----FNDDEICDFVELTRDRP-INIRFI 261 (400)
Q Consensus 190 i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~-----~n~~el~~l~~~~~~~g-v~~~~~ 261 (400)
+.=|++- ..+.. -.|+++++......+ +|.++...... .+.++..++++.+.+.| +++..+
T Consensus 191 YGGSlEN----R~Rf~------~EVv~aVr~~vg~~~-~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~v 257 (363)
T COG1902 191 YGGSLEN----RARFL------LEVVDAVREAVGADF-PVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHV 257 (363)
T ss_pred cCCcHHH----HHHHH------HHHHHHHHHHhCCCc-eEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEe
No 436
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.47 E-value=1.1e+02 Score=20.91 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEEecCCChh-HHHHHHHHHH
Q 015808 212 EKVMESINAAIEVGYNPVKVNCVVMRGFNDD-EICDFVELTR 252 (400)
Q Consensus 212 ~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~-el~~l~~~~~ 252 (400)
+.+.+.|..+++.|+ ++.+-+++++ .|.+ .+.++++.+.
T Consensus 12 ~el~~~l~~~r~~~~-~~~~kAvlT~-tN~~Wt~~~L~~El~ 51 (58)
T PF12646_consen 12 EELDKFLDALRKAGI-PIPLKAVLTP-TNINWTLKDLLEELK 51 (58)
T ss_pred HHHHHHHHHHHHcCC-CcceEEEECC-CcccCcHHHHHHHHH
Confidence 566677788888899 8889999998 5764 5666666554
No 437
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=36.33 E-value=2.1e+02 Score=31.61 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=62.1
Q ss_pred EEECCCccchhhHHHHHHHhhhcCCCceEEEEecCc--chhhhH----HHHHH-----cCCCeEEEecCCCCHHHHHHhh
Q 015808 138 RLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL--TLARKL----PKLKE-----SGLTSVNISLDTLVPAKFEFLT 206 (400)
Q Consensus 138 ~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~--ll~~~~----~~l~~-----~g~~~i~iSldg~~~~~~~~ir 206 (400)
.++|||--|...+.++++..+ +. -+.|.|.+. ++-+++ ..+.+ .+...|.|+-.|+.-.. .
T Consensus 551 ~VfGG~~~L~~~I~~~~~~~~--p~--~I~V~tTc~~eiIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~---~- 622 (917)
T PRK14477 551 AIFGGWENLKQGILRVIEKFK--PK--VIGVMTTGLTETMGDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSL---Q- 622 (917)
T ss_pred eEECcHHHHHHHHHHHHHhcC--CC--EEEEECCchHhhhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCH---H-
Confidence 456788777666666655543 22 355555542 223443 33333 25567777777764221 1
Q ss_pred cCCCHHHHHHHHH-HHHHcCC-CcEEEEEEEecCCC--hhHHHHHHHHHHhCCCeEEEE
Q 015808 207 RRKGHEKVMESIN-AAIEVGY-NPVKVNCVVMRGFN--DDEICDFVELTRDRPINIRFI 261 (400)
Q Consensus 207 ~~~~~~~v~~~i~-~l~~~g~-~~v~i~~~v~~~~n--~~el~~l~~~~~~~gv~~~~~ 261 (400)
.+|+.++++|- .+.+.+- .+-.||.. ++.| ..++.++.+++.+.|+.+..+
T Consensus 623 --~G~~~a~~aiv~~~~~~~~~~~~~VNli--~~~~~~~gD~~eik~lL~~~Gl~v~~v 677 (917)
T PRK14477 623 --EGYAAAVEAIVATLPEPGERIPGQVNIL--PGAHLTPADVEEIKEIVEAFGLDPVVV 677 (917)
T ss_pred --HHHHHHHHHHHHHhccccCCCCCcEEEe--CCCCCChhhHHHHHHHHHHcCCceEEe
Confidence 23777776664 4433211 12334533 4443 478899999999999987553
No 438
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=35.99 E-value=90 Score=31.61 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEE
Q 015808 210 GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 261 (400)
Q Consensus 210 ~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~ 261 (400)
++....+.|+.+++.|+ ++.|-..-.+.-+++|+..+.+++.+.|+.+...
T Consensus 341 G~~NL~~Hi~n~~~fg~-p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~ 391 (524)
T cd00477 341 GFANLRKHIENIKKFGV-PVVVAINKFSTDTDAELALVRKLAEEAGAFVAVS 391 (524)
T ss_pred HHHHHHHHHHHHHHcCC-CeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 37888888888899999 8777766666557889999999999999876554
No 439
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=35.94 E-value=2.3e+02 Score=30.58 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHH-------hCCCCEEEEECC---------Cccchh-------------h-HHHHHHHhhhcCC
Q 015808 113 KPQLLSLNEILRLAYLFV-------TSGVDKIRLTGG---------EPTVRK-------------D-IEEACFHLSKLKG 162 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~-------~~g~~~i~~~GG---------EPll~~-------------~-l~~~i~~~~~~~g 162 (400)
..+.||.++|.++++.+. +.|.+.|.+++| -|..+. . +.++++.+++.-+
T Consensus 537 ~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~ 616 (765)
T PRK08255 537 VPREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWP 616 (765)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcC
Confidence 346799999999887653 468999999987 676532 2 3588888877533
Q ss_pred --C-ceEEEEe-----cCcchhh---hHHHHHHcCCCeEEEec
Q 015808 163 --L-KTLAMTT-----NGLTLAR---KLPKLKESGLTSVNISL 194 (400)
Q Consensus 163 --~-~~~~i~T-----NG~ll~~---~~~~l~~~g~~~i~iSl 194 (400)
+ ..+.|.. +|.-+++ .++.|.+.|++.|.||-
T Consensus 617 ~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 617 AEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSS 659 (765)
T ss_pred CCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCC
Confidence 2 0233332 2322332 23566778999999985
No 440
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=35.93 E-value=1.3e+02 Score=28.86 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEE--------------------C---------CCccchhhHHHHHHHhhhcCC
Q 015808 112 PKPQLLSLNEILRLAYLFVTSGVDKIRLT--------------------G---------GEPTVRKDIEEACFHLSKLKG 162 (400)
Q Consensus 112 ~~~~~~s~e~i~~ii~~~~~~g~~~i~~~--------------------G---------GEPll~~~l~~~i~~~~~~~g 162 (400)
-.+..++.+.++++|+.+...+...+.|+ | |.-....++.++++++++. |
T Consensus 10 ~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~r-g 88 (329)
T cd06568 10 VARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAER-H 88 (329)
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHc-C
Confidence 34568899999999999987665544332 1 1234446688999999884 7
Q ss_pred CceEE
Q 015808 163 LKTLA 167 (400)
Q Consensus 163 ~~~~~ 167 (400)
| .|.
T Consensus 89 I-~vI 92 (329)
T cd06568 89 I-TVV 92 (329)
T ss_pred C-EEE
Confidence 7 443
No 441
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=35.93 E-value=3.2e+02 Score=24.48 Aligned_cols=112 Identities=10% Similarity=0.200 Sum_probs=63.1
Q ss_pred hCCCCEEEEE----------CCCccc--hhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCC
Q 015808 131 TSGVDKIRLT----------GGEPTV--RKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLV 198 (400)
Q Consensus 131 ~~g~~~i~~~----------GGEPll--~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~ 198 (400)
+.....|++. ||==+. ...+.++++.+++. |+ .|++.-++ ..+.++.-.+.|.+.|.+.---+
T Consensus 82 ~~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~-Gi-rVSLFiD~--d~~qi~aa~~~gA~~IELhTG~Y- 156 (243)
T COG0854 82 KTKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNA-GI-RVSLFIDP--DPEQIEAAAEVGAPRIELHTGPY- 156 (243)
T ss_pred hcCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhC-CC-eEEEEeCC--CHHHHHHHHHhCCCEEEEecccc-
Confidence 4455566663 554444 35578999999984 88 78887775 34677777888888777653222
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHH
Q 015808 199 PAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 249 (400)
Q Consensus 199 ~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~ 249 (400)
.+.++.--+ ..+++.+..|....+.+. .+++.+.-..|.++..+..+++
T Consensus 157 a~~~~~~~~-~~~~~el~rl~~~a~~A~-~lGL~VnAGHgLty~Nv~~~a~ 205 (243)
T COG0854 157 ADAHDAAEQ-ARADAELERLAKAAKLAA-ELGLKVNAGHGLTYHNVKPLAA 205 (243)
T ss_pred cccCChHHH-HHHHHHHHHHHHHHHHHH-HcCceEecCCCccccchHHHhc
Confidence 222221111 113445555554444433 3333433444556666666554
No 442
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.75 E-value=73 Score=30.75 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEC
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTG 141 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~G 141 (400)
+.++...+++.+.+.|+..|.+++
T Consensus 233 ~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 233 RMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc
Confidence 445555555555555555555554
No 443
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=35.69 E-value=1.1e+02 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEE-EECCCccchhhH
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIR-LTGGEPTVRKDI 150 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~-~~GGEPll~~~l 150 (400)
..+-.+.+..+++.+++.|+.... ++-|..+..++.
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~ 120 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEI 120 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHH
Confidence 445567888999999998877544 377888877653
No 444
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=35.46 E-value=4.2e+02 Score=25.60 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECC-CccchhhHHHHHHHhhhcC--CCceEEEEecCcchhhhH----HHHHHcCCCeE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGG-EPTVRKDIEEACFHLSKLK--GLKTLAMTTNGLTLARKL----PKLKESGLTSV 190 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GG-EPll~~~l~~~i~~~~~~~--g~~~~~i~TNG~ll~~~~----~~l~~~g~~~i 190 (400)
+.++..+.+.+..+.|.+.|.+.+| ...+.. -.+.++.+++.- ++ .+.+.-|+..-.+.. +.|.+.++.++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~~-di~~i~~vR~~~G~~~-~l~vDan~~~~~~~A~~~~~~l~~~~l~~i 220 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGPGVVRR-DLKACLAVREAVGPDM-RLMHDGAHWYSRADALRLGRALEELGFFWY 220 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCchhHHH-HHHHHHHHHHHhCCCC-eEEEECCCCcCHHHHHHHHHHhhhcCCCeE
Confidence 6778888888888899999988764 332333 355667776543 34 688888885543322 34445566666
Q ss_pred EEecCCCCHHHHHHhhcCCC----HHHH----HHHHHHHHHcCC-CcEEEEEEEecCCChhHHHHHHHHHHhCCCeEE
Q 015808 191 NISLDTLVPAKFEFLTRRKG----HEKV----MESINAAIEVGY-NPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 259 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~----~~~v----~~~i~~l~~~g~-~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~ 259 (400)
-=.+...+-+.+.+++...+ .+.. .+..+.+.+.+. +-+.+..... | -..+..++.+++...|+.+.
T Consensus 221 EeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~-G-Git~~~~ia~~a~~~gi~~~ 296 (368)
T cd03329 221 EDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLV-G-GITGAMKTAHLAEAFGLDVE 296 (368)
T ss_pred eCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCcccc-C-CHHHHHHHHHHHHHcCCEEE
Confidence 64443323355556654322 1221 233444444443 2222222222 2 35678888889999888753
No 445
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=35.29 E-value=2.2e+02 Score=22.32 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCCEEEEEC-CCccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCCCH
Q 015808 121 EILRLAYLFVTSGVDKIRLTG-GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVP 199 (400)
Q Consensus 121 ~i~~ii~~~~~~g~~~i~~~G-GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~~~ 199 (400)
++.++++.+.+. +.|.++| |.- . .-..++...+... +. .+...++.......... ...+--.|.||..|.+
T Consensus 2 ~i~~~~~~i~~~--~~i~i~g~g~s-~-~~a~~~~~~l~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~i~iS~~g~~- 73 (139)
T cd05013 2 ALEKAVDLLAKA--RRIYIFGVGSS-G-LVAEYLAYKLLRL-GK-PVVLLSDPHLQLMSAAN-LTPGDVVIAISFSGET- 73 (139)
T ss_pred HHHHHHHHHHhC--CEEEEEEcCch-H-HHHHHHHHHHHHc-CC-ceEEecCHHHHHHHHHc-CCCCCEEEEEeCCCCC-
Confidence 456667766665 4789988 642 1 1123344444443 54 34444444322211111 2223336888888743
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 200 AKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 200 ~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
..+++.++.+++.|.
T Consensus 74 ------------~~~~~~~~~a~~~g~ 88 (139)
T cd05013 74 ------------KETVEAAEIAKERGA 88 (139)
T ss_pred ------------HHHHHHHHHHHHcCC
Confidence 456777888888887
No 446
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=35.02 E-value=4.6e+02 Score=25.94 Aligned_cols=112 Identities=12% Similarity=0.160 Sum_probs=56.7
Q ss_pred ECCCccchhhHHHHHHHhhhcCCCceEEEEecCc--chhhh----HHHHHH-----cCCCeEEEecCCCCHHHHHHhhcC
Q 015808 140 TGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL--TLARK----LPKLKE-----SGLTSVNISLDTLVPAKFEFLTRR 208 (400)
Q Consensus 140 ~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~--ll~~~----~~~l~~-----~g~~~i~iSldg~~~~~~~~ir~~ 208 (400)
+|||.-|...+.++++..+ +. -+.|.|... ++-+. +.++.+ .++..+.++-.|+.... .
T Consensus 63 ~Gg~~~L~~~i~~~~~~~~--p~--~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~---~--- 132 (428)
T cd01965 63 FGGEDNLIEALKNLLSRYK--PD--VIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSH---E--- 132 (428)
T ss_pred ECcHHHHHHHHHHHHHhcC--CC--EEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcH---H---
Confidence 5887655555555554432 22 344544432 22222 344443 35666777776654211 1
Q ss_pred CCHHHHHHHHHH-HHHcC--CCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEE
Q 015808 209 KGHEKVMESINA-AIEVG--YNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 261 (400)
Q Consensus 209 ~~~~~v~~~i~~-l~~~g--~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~ 261 (400)
.+|+.+++.+-. +.... ..+-.|+..........++.++.+++++.|+++..+
T Consensus 133 ~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 133 TGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 236777666643 32211 113345543221112236888888888999876543
No 447
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.02 E-value=4.1e+02 Score=25.43 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEECCCccchhh-HHHHHHHhhhcCCCceEE-EEecCcchhhhHHHHHHc---CC-CeEEEe
Q 015808 120 NEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLA-MTTNGLTLARKLPKLKES---GL-TSVNIS 193 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~GGEPll~~~-l~~~i~~~~~~~g~~~~~-i~TNG~ll~~~~~~l~~~---g~-~~i~iS 193 (400)
+.+.+.++.+++.|.......---+...++ +.++++.+.+. |...+. ..|.|.+.++.+..+... .+ ..+.|.
T Consensus 115 ~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~-Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig 193 (337)
T PRK08195 115 DVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESY-GAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVG 193 (337)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhC-CCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence 345666666666664321111111222233 45556655553 443333 346776665544332221 12 235555
Q ss_pred cCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 194 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 194 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
+.+.+ ++.-.+.|.-.+.++|.
T Consensus 194 ~H~Hn-----------nlGla~ANslaAi~aGa 215 (337)
T PRK08195 194 FHGHN-----------NLGLGVANSLAAVEAGA 215 (337)
T ss_pred EEeCC-----------CcchHHHHHHHHHHhCC
Confidence 55521 23444445555555666
No 448
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=34.56 E-value=3.1e+02 Score=23.79 Aligned_cols=114 Identities=19% Similarity=0.197 Sum_probs=63.5
Q ss_pred HHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEE-ecCcchhhhHHHHHHcCCCeEEEecCCCCHHHHH
Q 015808 125 LAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMT-TNGLTLARKLPKLKESGLTSVNISLDTLVPAKFE 203 (400)
Q Consensus 125 ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~-TNG~ll~~~~~~l~~~g~~~i~iSldg~~~~~~~ 203 (400)
.++++.+.|...|.+++--|. ..+.++++.+++. |+ .+.+. .|.....+.+..+.+.|.+.|.+. .|.+.+.+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~--~~~~~~i~~~~~~-g~-~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~-pg~~~~~~- 141 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD--ATIKGAVKAAKKH-GK-EVQVDLINVKDKVKRAKELKELGADYIGVH-TGLDEQAK- 141 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH--HHHHHHHHHHHHc-CC-EEEEEecCCCChHHHHHHHHHcCCCEEEEc-CCcCcccC-
Confidence 467777899999998863221 2357888888885 77 56654 243333455666677789988763 22221111
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeE
Q 015808 204 FLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 204 ~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
+.. .++.++.+++.-. .+ .+.+.-|.|.+.+.+++ +.|++.
T Consensus 142 ---~~~----~~~~i~~l~~~~~-~~--~i~v~GGI~~~n~~~~~----~~Ga~~ 182 (206)
T TIGR03128 142 ---GQN----PFEDLQTILKLVK-EA--RVAVAGGINLDTIPDVI----KLGPDI 182 (206)
T ss_pred ---CCC----CHHHHHHHHHhcC-CC--cEEEECCcCHHHHHHHH----HcCCCE
Confidence 111 1334444444311 11 23345577777777654 356653
No 449
>PRK08185 hypothetical protein; Provisional
Probab=34.49 E-value=2e+02 Score=26.92 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE-----EC---C--CccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCC
Q 015808 118 SLNEILRLAYLFVTSGVDKIRL-----TG---G--EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 187 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~-----~G---G--EPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~ 187 (400)
++++..++++ +.|+..+.+ +| + +|-|+ .++++.+++..++ .+.+.--.-+.++.+++..+.|+
T Consensus 150 ~peea~~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~---~e~l~~I~~~~~i-PLVlHGgsg~~~e~~~~ai~~GI 222 (283)
T PRK08185 150 DPEQAEDFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQ---MDLLKEINERVDI-PLVLHGGSANPDAEIAESVQLGV 222 (283)
T ss_pred CHHHHHHHHH---hhCCCEEEeccCcccCCcCCCCCCCcC---HHHHHHHHHhhCC-CEEEECCCCCCHHHHHHHHHCCC
Q ss_pred CeEEEecC
Q 015808 188 TSVNISLD 195 (400)
Q Consensus 188 ~~i~iSld 195 (400)
..|+|.-|
T Consensus 223 ~KiNi~T~ 230 (283)
T PRK08185 223 GKINISSD 230 (283)
T ss_pred eEEEeChH
No 450
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=34.47 E-value=4.1e+02 Score=25.23 Aligned_cols=58 Identities=14% Similarity=0.330 Sum_probs=30.8
Q ss_pred HhCCCCEEEEECCCc---cchhh---------HHHHHHHhhhc-CCCceEEEEecCcchhhhHHHHHHcCCCeEEE
Q 015808 130 VTSGVDKIRLTGGEP---TVRKD---------IEEACFHLSKL-KGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 130 ~~~g~~~i~~~GGEP---ll~~~---------l~~~i~~~~~~-~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~i 192 (400)
.+.|...+.+. +| ++.|+ +.++++.+++. .+...+.+.. ++ +..+..+.+.+.+.+++
T Consensus 190 ~eaGad~i~i~--d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg-~~--~~~~~~~~~~~~~~~s~ 260 (338)
T TIGR01464 190 VKAGAQAVQIF--DSWAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFAK-GA--GHLLEELAETGADVVGL 260 (338)
T ss_pred HHcCCCEEEEE--CCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC-Cc--HHHHHHHHhcCCCEEEe
Confidence 34677666553 33 45444 34566677664 2432344433 32 24467777777766533
No 451
>PRK09875 putative hydrolase; Provisional
Probab=34.23 E-value=4e+02 Score=25.00 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=38.7
Q ss_pred CCCCHHHHHHH-HHHHHh----CCCC--EEEEEC-CCccchhh---HHHHHHHhhhcCCCceEEEEecCc-chhhhHHHH
Q 015808 115 QLLSLNEILRL-AYLFVT----SGVD--KIRLTG-GEPTVRKD---IEEACFHLSKLKGLKTLAMTTNGL-TLARKLPKL 182 (400)
Q Consensus 115 ~~~s~e~i~~i-i~~~~~----~g~~--~i~~~G-GEPll~~~---l~~~i~~~~~~~g~~~~~i~TNG~-ll~~~~~~l 182 (400)
..++.+++.+. ++++.+ .+++ .|.=.| .++-+.+. +.+....+....|. .+.+.|... .-.+.++.|
T Consensus 94 ~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~-pi~~Ht~~~~~g~e~l~il 172 (292)
T PRK09875 94 ATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGR-PISTHTSFSTMGLEQLALL 172 (292)
T ss_pred hcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCC-cEEEcCCCccchHHHHHHH
Confidence 34677776653 444433 2222 131233 33333333 33443344444577 566666443 334667888
Q ss_pred HHcCCC--eEEEe
Q 015808 183 KESGLT--SVNIS 193 (400)
Q Consensus 183 ~~~g~~--~i~iS 193 (400)
.+.|++ .|.|+
T Consensus 173 ~e~Gvd~~rvvi~ 185 (292)
T PRK09875 173 QAHGVDLSRVTVG 185 (292)
T ss_pred HHcCcCcceEEEe
Confidence 888884 44443
No 452
>PRK06740 histidinol-phosphatase; Validated
Probab=34.19 E-value=3.4e+02 Score=25.90 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=46.1
Q ss_pred hhHHHHHHHhhhcCCCceEEEEec-Ccc-------hh-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHH
Q 015808 148 KDIEEACFHLSKLKGLKTLAMTTN-GLT-------LA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESI 218 (400)
Q Consensus 148 ~~l~~~i~~~~~~~g~~~~~i~TN-G~l-------l~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i 218 (400)
+.+.++++.+++. |+ .+.|+|. |.. .. +.+..+.+.|+ .|.++=|+..++.... .|+ +++
T Consensus 239 ~~~~~I~~a~~~~-g~-~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv-~~tlgSDAH~p~~VG~-----~~~---~a~ 307 (331)
T PRK06740 239 SYYKEIARALVET-NT-ATEINAGLYYRYPVREMCPSPLFLQVLAKHEV-PITLSSDAHYPNDLGK-----YVE---ENV 307 (331)
T ss_pred HHHHHHHHHHHHc-CC-EEEEECccccCCCCCCCCcCHHHHHHHHHCCC-eEEEeeCCCCHHHHHh-----HHH---HHH
Confidence 4577888888875 77 6888886 321 12 34577778887 6899999877654321 234 456
Q ss_pred HHHHHcCC
Q 015808 219 NAAIEVGY 226 (400)
Q Consensus 219 ~~l~~~g~ 226 (400)
+.+.+.|+
T Consensus 308 ~~l~~~G~ 315 (331)
T PRK06740 308 KTLRNHGV 315 (331)
T ss_pred HHHHHcCC
Confidence 77788898
No 453
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=34.00 E-value=3.8e+02 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRL 139 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~ 139 (400)
+.+.+.++++.+.+.|+..|.+
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l 168 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISL 168 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 4445555555555555555544
No 454
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=33.92 E-value=3.4e+02 Score=26.29 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHH-------HhCCCCEEEEECCCccchhhHH-----------------------HHHHHhhhcCCC
Q 015808 114 PQLLSLNEILRLAYLF-------VTSGVDKIRLTGGEPTVRKDIE-----------------------EACFHLSKLKGL 163 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~-------~~~g~~~i~~~GGEPll~~~l~-----------------------~~i~~~~~~~g~ 163 (400)
.+.||.++|.++++.+ .+.|.+.|.++|+.=.|--+|. ++++.+++.-|-
T Consensus 146 p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~ 225 (362)
T PRK10605 146 PRALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGA 225 (362)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCC
Q ss_pred ceEEEEec----------Ccchhhh----HHHHHHcCCCeEEEe
Q 015808 164 KTLAMTTN----------GLTLARK----LPKLKESGLTSVNIS 193 (400)
Q Consensus 164 ~~~~i~TN----------G~ll~~~----~~~l~~~g~~~i~iS 193 (400)
..+.+--| |..+++. +..|.+.|++.|.||
T Consensus 226 ~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs 269 (362)
T PRK10605 226 DRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMS 269 (362)
T ss_pred CeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEec
No 455
>PRK07945 hypothetical protein; Provisional
Probab=33.91 E-value=1.5e+02 Score=28.44 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=48.6
Q ss_pred CccchhhHHHHHHHhhhcCCCceEEEEecCcch--h-hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHH
Q 015808 143 EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL--A-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESIN 219 (400)
Q Consensus 143 EPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll--~-~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~ 219 (400)
-|....++.++++.+++. |+ .+.|+|+|... . +.+....+.|+ .+.|+=|+..++.. ...-.++.
T Consensus 240 ~~~~~~~~~~i~~a~~e~-g~-~lEINt~~~r~~P~~~il~~a~e~G~-~vtigSDAH~p~~v---------~~~~~~~~ 307 (335)
T PRK07945 240 RPESKFDAEAVFAACREH-GT-AVEINSRPERRDPPTRLLRLALDAGC-LFSIDTDAHAPGQL---------DWLGYGCE 307 (335)
T ss_pred CChhhcCHHHHHHHHHHh-CC-EEEEeCCCCCCCChHHHHHHHHHcCC-eEEecCCCCChhhc---------chHHHHHH
Confidence 343334568888988885 77 78999987543 2 34577778887 57888777554432 23344788
Q ss_pred HHHHcCC
Q 015808 220 AAIEVGY 226 (400)
Q Consensus 220 ~l~~~g~ 226 (400)
.+.+.|+
T Consensus 308 ~a~~~g~ 314 (335)
T PRK07945 308 RAEEAGV 314 (335)
T ss_pred HHHHcCC
Confidence 8888888
No 456
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=33.76 E-value=3.7e+02 Score=24.47 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEE-CCCccchhhHHHHHHHhhhcC--CCceEEEEecCcchhh----hHHHHHHcCCCeE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLT-GGEPTVRKDIEEACFHLSKLK--GLKTLAMTTNGLTLAR----KLPKLKESGLTSV 190 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~-GGEPll~~~l~~~i~~~~~~~--g~~~~~i~TNG~ll~~----~~~~l~~~g~~~i 190 (400)
+.+++.+.++++.+.|...+.+- |+.| .+-.+.++.+++.- ++ .+.+..|+..-.+ .++.|.+.++.+|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~---~~d~~~v~~vr~~~g~~~-~l~vDan~~~~~~~a~~~~~~l~~~~i~~i 160 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP---ARDVAVVAALREAVGDDA-ELRVDANRGWTPKQAIRALRALEDLGLDYV 160 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH---HHHHHHHHHHHHhcCCCC-EEEEeCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 46777777777778888877774 4444 22346666666543 34 7889999854422 2355666788888
Q ss_pred EEecCCCCHHHHHHhhcCCC--------HHHHHHHHHHHHHcC-CCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEE
Q 015808 191 NISLDTLVPAKFEFLTRRKG--------HEKVMESINAAIEVG-YNPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 259 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~--------~~~v~~~i~~l~~~g-~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~ 259 (400)
.-.+...+.+.+..++...+ .... ..++.+.+.+ ..-+.+..... | -..+..++.++++..|+.+.
T Consensus 161 EeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~-~~~~~~i~~~~~d~v~~k~~~~-G-Gi~~~~~~~~~A~~~gi~~~ 235 (265)
T cd03315 161 EQPLPADDLEGRAALARATDTPIMADESAFTP-HDAFRELALGAADAVNIKTAKT-G-GLTKAQRVLAVAEALGLPVM 235 (265)
T ss_pred ECCCCcccHHHHHHHHhhCCCCEEECCCCCCH-HHHHHHHHhCCCCEEEEecccc-c-CHHHHHHHHHHHHHcCCcEE
Confidence 87776655566666653321 2111 2223333333 32222332222 2 34667788888888777653
No 457
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=33.58 E-value=4.3e+02 Score=25.18 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=49.3
Q ss_pred hhHHHHHHcC--CCeEEEecCCCCHHHHHHhhcCC-------CHHHHHHHHHHHHHcCCCcEEEEEEEecCC--ChhHHH
Q 015808 177 RKLPKLKESG--LTSVNISLDTLVPAKFEFLTRRK-------GHEKVMESINAAIEVGYNPVKVNCVVMRGF--NDDEIC 245 (400)
Q Consensus 177 ~~~~~l~~~g--~~~i~iSldg~~~~~~~~ir~~~-------~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~--n~~el~ 245 (400)
+.+..+++.| ..+|.|=+||- ..+.+.+|.. +++.+.+.++.+.+.|++.+++..-=+.+. ..+|+.
T Consensus 8 ~~~~~~l~~g~iP~HVAiIMDGN--rRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~ 85 (322)
T PTZ00349 8 RFITSLLRDFINIKHISIIMDGN--RRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIH 85 (322)
T ss_pred HHHHHHhhcCCCCCcEEEEcCCC--HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHH
Confidence 3334444444 34788888983 3455554422 389999999999999995555544322222 235554
Q ss_pred HHHH--------------HHHhCCCeEEEE
Q 015808 246 DFVE--------------LTRDRPINIRFI 261 (400)
Q Consensus 246 ~l~~--------------~~~~~gv~~~~~ 261 (400)
.+++ .+.+.|+.++++
T Consensus 86 ~Lm~L~~~~l~~~~~~~~~l~~~~irirvi 115 (322)
T PTZ00349 86 FLFYLNLLILINEDFFFKFIKDNKIKIKII 115 (322)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHCCCEEEEE
Confidence 4333 344567777776
No 458
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=33.39 E-value=1.6e+02 Score=28.25 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEEC-CCccchh-hHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEecCCC
Q 015808 120 NEILRLAYLFVTSGVDKIRLTG-GEPTVRK-DIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTL 197 (400)
Q Consensus 120 e~i~~ii~~~~~~g~~~i~~~G-GEPll~~-~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSldg~ 197 (400)
+.+.++++.+.+.+.+.|.|+| |-....- .+..++..+.. + .+.+.+........ ......+--.|.||..|-
T Consensus 30 ~~l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~---i-~v~~~~~~~~~~~~-~~~~~~~~lvI~iS~SGe 104 (340)
T PRK11382 30 PLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSD---L-QVYAISGWEFCDNT-PYRLDDRCAVIGVSDYGK 104 (340)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcC---C-CeEEeccHHHHhcC-CcCCCCCCEEEEEcCCCC
Confidence 4556677777777788999999 8776542 34445444433 2 23333322111100 111112222688888774
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 015808 198 VPAKFEFLTRRKGHEKVMESINAAIEVGY 226 (400)
Q Consensus 198 ~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 226 (400)
+ ..+++.++.+++.|.
T Consensus 105 T-------------~e~i~al~~ak~~Ga 120 (340)
T PRK11382 105 T-------------EEVIKALELGRACGA 120 (340)
T ss_pred C-------------HHHHHHHHHHHHcCC
Confidence 3 457888899999887
No 459
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.37 E-value=4.9e+02 Score=25.78 Aligned_cols=111 Identities=15% Similarity=0.224 Sum_probs=51.5
Q ss_pred ECCCccchhhHHHHHHHhhhcCCCceEEEEecCc--chhhhH----HHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHH
Q 015808 140 TGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL--TLARKL----PKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEK 213 (400)
Q Consensus 140 ~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~--ll~~~~----~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~ 213 (400)
+|||--|...+.++.+..+ +. .+.|.|... ++-+.+ .++.+.+...|.|+..|+....+ .+|+.
T Consensus 68 ~Gg~~kL~~~I~~~~~~~~--p~--~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf~g~~~------~G~~~ 137 (427)
T cd01971 68 FGGEDRLRELIKSTLSIID--AD--LFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGFKGNNY------AGHEI 137 (427)
T ss_pred eCCHHHHHHHHHHHHHhCC--CC--EEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEECCCcCcccc------cHHHH
Confidence 6776444444444433322 12 344444432 222333 33333456677777777543221 23666
Q ss_pred HHHHHHH-HHHcC--CCcEEEEEEEe-cCCC---hhHHHHHHHHHHhCCCeEEE
Q 015808 214 VMESINA-AIEVG--YNPVKVNCVVM-RGFN---DDEICDFVELTRDRPINIRF 260 (400)
Q Consensus 214 v~~~i~~-l~~~g--~~~v~i~~~v~-~~~n---~~el~~l~~~~~~~gv~~~~ 260 (400)
+++++-. +...+ ..+-.||.+-. +..+ ..++.++.+++.+.|+.+..
T Consensus 138 a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~ 191 (427)
T cd01971 138 VLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNI 191 (427)
T ss_pred HHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEE
Confidence 6655543 22211 11233444321 1112 25677777777777776543
No 460
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=33.28 E-value=96 Score=30.89 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEEeeec
Q 015808 210 GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMP 265 (400)
Q Consensus 210 ~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~p 265 (400)
+|......|+.+++.|+ ++.|-..-...-++.|+..+.+++.+.|+++..-+...
T Consensus 354 G~aNL~~Hi~Nikkfgv-p~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~~~ls~vwa 408 (554)
T COG2759 354 GFANLLKHIENIKKFGV-PVVVAINKFPTDTEAEIAAIEKLCEEHGVEVALSEVWA 408 (554)
T ss_pred HHHHHHHHHHHHHHcCC-CeEEEeccCCCCCHHHHHHHHHHHHHcCCceeehhhhh
Confidence 47888888888889999 77666654443477899999999999998776554443
No 461
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=33.20 E-value=1.3e+02 Score=28.47 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEC---CCccchhhHHHHHHHhhhcCCCceEEEEecCcchh-hhHHHHHHc-CCCeEEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTG---GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLKES-GLTSVNI 192 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~G---GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~-~~~~~l~~~-g~~~i~i 192 (400)
+.++..++++.+.+.|+..|+++| .+..-.+--.+.+..+++.-.+ -+.-||-..+ +.+..+++. |++.|.|
T Consensus 136 ~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~i---pvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 136 SPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPI---PVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp -CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TS---EEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred chhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccc---eeEEcCccCCHHHHHHHHHhcCCcEEEE
Q ss_pred e
Q 015808 193 S 193 (400)
Q Consensus 193 S 193 (400)
.
T Consensus 213 g 213 (309)
T PF01207_consen 213 G 213 (309)
T ss_dssp S
T ss_pred c
No 462
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=33.08 E-value=66 Score=26.04 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=24.8
Q ss_pred CCCccchhhHHHHHHHhhhcCCCceEEEEecCcch
Q 015808 141 GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL 175 (400)
Q Consensus 141 GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll 175 (400)
|-||..++++..++..+++. |+ ...+.+|+...
T Consensus 40 g~e~~fY~Di~rIL~dLk~~-GV-tl~~ASRt~ap 72 (144)
T KOG4549|consen 40 GEEMIFYDDIRRILVDLKKL-GV-TLIHASRTMAP 72 (144)
T ss_pred cceeeeccchhHHHHHHHhc-Cc-EEEEecCCCCH
Confidence 45788888888888888885 77 67777777654
No 463
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=33.07 E-value=1.8e+02 Score=24.63 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEE
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLT 140 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~ 140 (400)
..++.+++.+.+..+++.|++.|.+.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq 40 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ 40 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 57999999999999999999998774
No 464
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=33.02 E-value=3.9e+02 Score=24.82 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE-------------ECCCccchhhHHHHHHHhhhcCCCceEEEEecCcc--hhhhHHHH
Q 015808 118 SLNEILRLAYLFVTSGVDKIRL-------------TGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT--LARKLPKL 182 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~-------------~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~l--l~~~~~~l 182 (400)
+.+++.+.++.+.+.|...|.+ .|+.| ..+.++++.+++..++ .+.+--+... ..+.++.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~---~~~~eiv~~vr~~~~~-Pv~vKl~~~~~~~~~~a~~~ 175 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDP---EAVAEIVKAVKKATDV-PVIVKLTPNVTDIVEIARAA 175 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCH---HHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHH
Q ss_pred HHcCCCeEEEe
Q 015808 183 KESGLTSVNIS 193 (400)
Q Consensus 183 ~~~g~~~i~iS 193 (400)
.+.|++.|.++
T Consensus 176 ~~~G~d~i~~~ 186 (296)
T cd04740 176 EEAGADGLTLI 186 (296)
T ss_pred HHcCCCEEEEE
No 465
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=32.99 E-value=3.6e+02 Score=24.08 Aligned_cols=120 Identities=17% Similarity=0.116 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcchh--h-hHHHHHHcCCCeEE
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA--R-KLPKLKESGLTSVN 191 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~--~-~~~~l~~~g~~~i~ 191 (400)
..++.++...+++++.+. ...+-=|-||+..+=.+.++.+++...-. .|.-..-..+ . +.+..+++|-++++
T Consensus 11 D~~~l~~Ai~~a~~v~~~---~diiEvGTpLik~eG~~aV~~lr~~~pd~--~IvAD~Kt~D~G~~e~~ma~~aGAd~~t 85 (217)
T COG0269 11 DLLDLEEAIEIAEEVADY---VDIIEVGTPLIKAEGMRAVRALRELFPDK--IIVADLKTADAGAIEARMAFEAGADWVT 85 (217)
T ss_pred cccCHHHHHHHHHHhhhc---ceEEEeCcHHHHHhhHHHHHHHHHHCCCC--eEEeeeeecchhHHHHHHHHHcCCCEEE
Confidence 346788888888876654 34445599999877567888887753221 2223332232 2 24667788999999
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeE
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 258 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~ 258 (400)
|+--+. .+.+.+.++.+.+.|. .+.+.++ |..+.++-.+++++.|++.
T Consensus 86 V~g~A~-------------~~TI~~~i~~A~~~~~-~v~iDl~-----~~~~~~~~~~~l~~~gvd~ 133 (217)
T COG0269 86 VLGAAD-------------DATIKKAIKVAKEYGK-EVQIDLI-----GVWDPEQRAKWLKELGVDQ 133 (217)
T ss_pred EEecCC-------------HHHHHHHHHHHHHcCC-eEEEEee-----cCCCHHHHHHHHHHhCCCE
Confidence 985552 4778889999999987 5555543 3345666677777778764
No 466
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=32.93 E-value=4e+02 Score=24.66 Aligned_cols=67 Identities=7% Similarity=0.116 Sum_probs=36.2
Q ss_pred HHHHHHHhCCCCEEEEE----C-CCccchhh-HH--------HHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCe
Q 015808 124 RLAYLFVTSGVDKIRLT----G-GEPTVRKD-IE--------EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 189 (400)
Q Consensus 124 ~ii~~~~~~g~~~i~~~----G-GEPll~~~-l~--------~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~ 189 (400)
+.++.+.+.|+..|.+. + +-|++.++ +. ++++.++. .+. .+.+.+-|.. .+.+..+.+.+.+.
T Consensus 148 ~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~-~~~-~~~lH~cg~~-~~~~~~l~~~~~d~ 224 (306)
T cd00465 148 EYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAA-GEV-PIVHHSCYDA-ADLLEEMIQLGVDV 224 (306)
T ss_pred HHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhh-cCC-ceEEEECCCH-HHHHHHHHHhCcce
Confidence 34444556788777765 3 22344443 22 33333333 244 4566666643 45578888888765
Q ss_pred EEEe
Q 015808 190 VNIS 193 (400)
Q Consensus 190 i~iS 193 (400)
+++.
T Consensus 225 ~~~d 228 (306)
T cd00465 225 ISFD 228 (306)
T ss_pred Eecc
Confidence 5543
No 467
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.68 E-value=4e+02 Score=24.55 Aligned_cols=82 Identities=15% Similarity=0.226 Sum_probs=39.6
Q ss_pred HHHHHcCCCeEEEecCCCCH---------HHHHHhhcCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCh---hHHHH
Q 015808 180 PKLKESGLTSVNISLDTLVP---------AKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFND---DEICD 246 (400)
Q Consensus 180 ~~l~~~g~~~i~iSldg~~~---------~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~~v~~~~n~---~el~~ 246 (400)
..+.+.|.+.|.+.+--.|| ...+.+..+-+.+.+++.++.+++. .+ ++. ++.-.|. --+++
T Consensus 36 ~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~-p~v----lm~Y~N~i~~~G~e~ 110 (263)
T CHL00200 36 KILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKA-PIV----IFTYYNPVLHYGINK 110 (263)
T ss_pred HHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC-CEE----EEecccHHHHhCHHH
Confidence 44445555555555433221 2333444444566677766666642 22 221 1111232 23566
Q ss_pred HHHHHHhCCCeEEEEeeecC
Q 015808 247 FVELTRDRPINIRFIEFMPF 266 (400)
Q Consensus 247 l~~~~~~~gv~~~~~~~~p~ 266 (400)
+++.+.+.|++-..+.-.|+
T Consensus 111 F~~~~~~aGvdgviipDLP~ 130 (263)
T CHL00200 111 FIKKISQAGVKGLIIPDLPY 130 (263)
T ss_pred HHHHHHHcCCeEEEecCCCH
Confidence 66666666665444444443
No 468
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.58 E-value=4e+02 Score=24.48 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHc-CCCcEEEEEEEecCC-ChhHHHHHHHH
Q 015808 213 KVMESINAAIEV-GYNPVKVNCVVMRGF-NDDEICDFVEL 250 (400)
Q Consensus 213 ~v~~~i~~l~~~-g~~~v~i~~~v~~~~-n~~el~~l~~~ 250 (400)
.+.+.++.+++. +. ++.+.. |. |.+++.++.+.
T Consensus 187 ~~~~~i~~vk~~~~~-pv~vGf----GI~~~e~v~~~~~~ 221 (258)
T PRK13111 187 DLAELVARLKAHTDL-PVAVGF----GISTPEQAAAIAAV 221 (258)
T ss_pred cHHHHHHHHHhcCCC-cEEEEc----ccCCHHHHHHHHHh
Confidence 344455555554 33 444433 33 55777777764
No 469
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.44 E-value=3.9e+02 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCEEEEECCCccc-h-----hhHHHHHHHhhhcCCCc
Q 015808 122 ILRLAYLFVTSGVDKIRLTGGEPTV-R-----KDIEEACFHLSKLKGLK 164 (400)
Q Consensus 122 i~~ii~~~~~~g~~~i~~~GGEPll-~-----~~l~~~i~~~~~~~g~~ 164 (400)
+.+.++.+++.|...|-+.++.|-. . .++.++-+.+.+ .|+.
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~ 62 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQT-YQMP 62 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHH-cCCe
Confidence 4455666678999999998776532 1 124555555555 4773
No 470
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=32.30 E-value=75 Score=26.15 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=32.5
Q ss_pred EEEcCcccCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHHHHHhCCCCEEEE
Q 015808 88 RISLTERCNLRCHYCMPPEGVDLTPKPQLLSLNE----ILRLAYLFVTSGVDKIRL 139 (400)
Q Consensus 88 ~i~iT~~CNl~C~yC~~~~~~~~~~~~~~~s~e~----i~~ii~~~~~~g~~~i~~ 139 (400)
...+|..+||.|+|-...-++........-..+. +.+.++.+.+.+++.|.|
T Consensus 58 ~~~~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf 113 (140)
T cd02905 58 EAKLTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIAL 113 (140)
T ss_pred cEEEecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4667999999999987654443322211112222 334566667788999998
No 471
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=32.18 E-value=2.7e+02 Score=24.88 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEEeee
Q 015808 211 HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFM 264 (400)
Q Consensus 211 ~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~~~~ 264 (400)
|+++++-++...+...+++-+-+.+..-.+.+++.++.+++....+.+-++++.
T Consensus 147 ~eki~~~lki~~~l~~kki~ifvNl~~YLt~eei~el~~~i~~~~~~vlliE~~ 200 (216)
T TIGR01866 147 LEKCLEILQIFKELTKKKLFIFINSGAFLTKDELAELQKFISYTKLTVLFLEPR 200 (216)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEcHHHhCCHHHHHHHHHHHHHhcccEEEEecc
Confidence 788888888888876545555555544468899999999999988888777765
No 472
>PRK05588 histidinol-phosphatase; Provisional
Probab=31.97 E-value=3.9e+02 Score=24.20 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=46.7
Q ss_pred hhHHHHHHHhhhcCCCceEEEEecCcchh-------hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHH
Q 015808 148 KDIEEACFHLSKLKGLKTLAMTTNGLTLA-------RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINA 220 (400)
Q Consensus 148 ~~l~~~i~~~~~~~g~~~~~i~TNG~ll~-------~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~ 220 (400)
..+.++++.+.+. |+ .+.|+|.|.... ..+..+.+.|...|.++=|+-.++.... .| -++++.
T Consensus 166 ~~~~~il~~~~~~-g~-~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~-----~~---~~~~~~ 235 (255)
T PRK05588 166 EIIDEILKVLIEK-EK-VLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLGSDAHNIEDIGN-----NF---KFALEI 235 (255)
T ss_pred HHHHHHHHHHHHc-CC-EEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEECCCCCHHHHHh-----hH---HHHHHH
Confidence 3367888888885 77 688888664321 2356777888766899999876654321 24 446677
Q ss_pred HHHcCC
Q 015808 221 AIEVGY 226 (400)
Q Consensus 221 l~~~g~ 226 (400)
+++.|+
T Consensus 236 l~~~G~ 241 (255)
T PRK05588 236 AEYCNL 241 (255)
T ss_pred HHHcCC
Confidence 788888
No 473
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=31.93 E-value=3e+02 Score=25.25 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCCEEEEEC-CCccchhhH-HHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEec
Q 015808 124 RLAYLFVTSGVDKIRLTG-GEPTVRKDI-EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 194 (400)
Q Consensus 124 ~ii~~~~~~g~~~i~~~G-GEPll~~~l-~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iSl 194 (400)
..++.+.+.|.+.+.+.- |+| +.++ .++++. .++ .+. .+-|... +.++.+++.|.+.|.|+=
T Consensus 42 ~~A~~~~~~Ga~~lHvVDLg~~--n~~~i~~i~~~----~~~-~v~-vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 42 YYAKLYKDDGVKGCHVIMLGPN--NDDAAKEALHA----YPG-GLQ-VGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred HHHHHHHHcCCCEEEEEECCCC--cHHHHHHHHHh----CCC-CEE-EeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 345555667766555544 888 5442 333332 344 344 3666664 888888888888888864
No 474
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=31.78 E-value=1.1e+02 Score=27.76 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=29.0
Q ss_pred CEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcc-h-hhhHHHHHHcCC
Q 015808 135 DKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT-L-ARKLPKLKESGL 187 (400)
Q Consensus 135 ~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~l-l-~~~~~~l~~~g~ 187 (400)
..+.+.|++|+ +.-.+.++.+++. |+ .+.+.||.+. . ......+.+.|+
T Consensus 9 DGtl~~~~~~i--~~a~~~l~~l~~~-g~-~~~~~Tnn~~r~~~~~~~~l~~~g~ 59 (249)
T TIGR01457 9 DGTMYKGKERI--PEAETFVHELQKR-DI-PYLFVTNNSTRTPESVAEMLASFDI 59 (249)
T ss_pred CCceEcCCeeC--cCHHHHHHHHHHC-CC-eEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 34556666664 3567778777774 76 6777787432 2 233355555554
No 475
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.77 E-value=2e+02 Score=24.53 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=40.7
Q ss_pred HHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcE-EEEEEEecCC--------C------hhHH
Q 015808 180 PKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPV-KVNCVVMRGF--------N------DDEI 244 (400)
Q Consensus 180 ~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v-~i~~~v~~~~--------n------~~el 244 (400)
+.+.+.|++.|.+..+...+.... .+.+-+-.+.+.+.|+ .+ .+........ + .+.+
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl-~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGL-KIASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTC-EEEEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCC-eEEEEecccccccccccccCcchhhHHHHHHH
Confidence 456677888888887653322111 2444455566667788 43 3333332211 1 4567
Q ss_pred HHHHHHHHhCCCeE
Q 015808 245 CDFVELTRDRPINI 258 (400)
Q Consensus 245 ~~l~~~~~~~gv~~ 258 (400)
.+.++.++.+|++.
T Consensus 74 ~~~i~~a~~lg~~~ 87 (213)
T PF01261_consen 74 KKAIDLAKRLGAKY 87 (213)
T ss_dssp HHHHHHHHHHTBSE
T ss_pred HHHHHHHHHhCCCc
Confidence 78888888888754
No 476
>PTZ00175 diphthine synthase; Provisional
Probab=31.76 E-value=1.5e+02 Score=27.48 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcCCCceEEEEecCcch
Q 015808 121 EILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL 175 (400)
Q Consensus 121 ~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll 175 (400)
....+++.+. +-..+.+.+|+|++.-...+++..+++. |+ .+.+.-+...+
T Consensus 66 ~~~~ii~~a~--~~~Vv~L~~GDP~i~~t~~~l~~~~~~~-gi-~vevIPGvSi~ 116 (270)
T PTZ00175 66 GCDEILEEAK--EKNVAFLVVGDPFCATTHTDLYLRAKKK-GI-EVEVIHNASIM 116 (270)
T ss_pred HHHHHHHHhC--CCCEEEEECCCCCccCCHHHHHHHHHHC-CC-cEEEECCcCHH
Confidence 3445666553 3456778899999988888888888885 88 68887665433
No 477
>PLN02645 phosphoglycolate phosphatase
Probab=31.76 E-value=1.1e+02 Score=28.84 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=45.4
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCC
Q 015808 177 RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI 256 (400)
Q Consensus 177 ~~~~~l~~~g~~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv 256 (400)
+.+..+... .+.+-+.+||. . +++...++.+.+.|+.|++.|. ++.+- .+-......++++.+.++|+
T Consensus 19 ~~~~~~~~~-~~~~~~D~DGt---l---~~~~~~~~ga~e~l~~lr~~g~-~~~~~----TN~~~~~~~~~~~~l~~lGi 86 (311)
T PLN02645 19 ENADELIDS-VETFIFDCDGV---I---WKGDKLIEGVPETLDMLRSMGK-KLVFV----TNNSTKSRAQYGKKFESLGL 86 (311)
T ss_pred HHHHHHHHh-CCEEEEeCcCC---e---EeCCccCcCHHHHHHHHHHCCC-EEEEE----eCCCCCCHHHHHHHHHHCCC
Confidence 456666654 67899999995 2 2333447888999999999988 43222 22233445666667777777
Q ss_pred eE
Q 015808 257 NI 258 (400)
Q Consensus 257 ~~ 258 (400)
.+
T Consensus 87 ~~ 88 (311)
T PLN02645 87 NV 88 (311)
T ss_pred CC
Confidence 53
No 478
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=31.49 E-value=3.4e+02 Score=26.40 Aligned_cols=82 Identities=22% Similarity=0.191 Sum_probs=51.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CCc-cchhh-----HHHHHHHhhhcCCCceEEEEecCcch-hh---hHHH
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GEP-TVRKD-----IEEACFHLSKLKGLKTLAMTTNGLTL-AR---KLPK 181 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GEP-ll~~~-----l~~~i~~~~~~~g~~~~~i~TNG~ll-~~---~~~~ 181 (400)
..-++.+++.+++.++...|+..|..-| ||+ ++..+ +.+.++.+.+..|-.. .+..|.+-. ++ ..+.
T Consensus 140 ~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~-~y~~nit~~~~e~i~~a~~ 218 (367)
T cd08205 140 SIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKT-LYAPNITGDPDELRRRADR 218 (367)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcc-eEEEEcCCCHHHHHHHHHH
Confidence 3468999999999999999998887766 886 44332 3556666664334422 233333322 33 3355
Q ss_pred HHHcCCCeEEEecCC
Q 015808 182 LKESGLTSVNISLDT 196 (400)
Q Consensus 182 l~~~g~~~i~iSldg 196 (400)
..+.|.+.+.+..-.
T Consensus 219 a~~~Gad~vmv~~~~ 233 (367)
T cd08205 219 AVEAGANALLINPNL 233 (367)
T ss_pred HHHcCCCEEEEeccc
Confidence 567888877776543
No 479
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=31.44 E-value=2e+02 Score=26.84 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEE-C---CCccchhhH-HHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLT-G---GEPTVRKDI-EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 192 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~-G---GEPll~~~l-~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~i 192 (400)
++++..++++ +.|+..+-+. | |----.|.| .++++.+++.-++ .+.+.--.-+.++++.+..+.|+..|+|
T Consensus 154 ~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~i-PLVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 154 DPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDV-PLVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCC-CeEEecCCCCCHHHHHHHHHcCCeEEEe
Q ss_pred e
Q 015808 193 S 193 (400)
Q Consensus 193 S 193 (400)
.
T Consensus 230 ~ 230 (282)
T TIGR01858 230 A 230 (282)
T ss_pred C
No 480
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=31.30 E-value=4.4e+02 Score=26.20 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=59.0
Q ss_pred EEECCCccchhhHHHHHHHhhhcCCCceEEEEecCc--chhhhH----HHHHH-----cCCCeEEEecCCCCHHHHHHhh
Q 015808 138 RLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL--TLARKL----PKLKE-----SGLTSVNISLDTLVPAKFEFLT 206 (400)
Q Consensus 138 ~~~GGEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~--ll~~~~----~~l~~-----~g~~~i~iSldg~~~~~~~~ir 206 (400)
.++|||--|...+.++.+..+ +. -+.|.|.+. ++-+++ .++.+ .++..|.++-.|+.- .+ .
T Consensus 71 ~VfGg~~~L~~~I~~~~~~~~--P~--~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~~~~~pvi~v~tpgf~g-~~--~- 142 (432)
T TIGR01285 71 TILGGDEHIEEAIDTLCQRNK--PK--AIGLLSTGLTETRGEDIARVVRQFREKHPQHKGTAVVTVNTPDFKG-SL--E- 142 (432)
T ss_pred eEECcHHHHHHHHHHHHHhcC--CC--EEEEeCCCcccccccCHHHHHHHHHhhcccccCCeEEEecCCCcCC-ch--H-
Confidence 456788555555555555332 22 356666554 233333 33333 255667777666532 11 1
Q ss_pred cCCCHHHHHHHHH-HHHHc----CCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEE
Q 015808 207 RRKGHEKVMESIN-AAIEV----GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRF 260 (400)
Q Consensus 207 ~~~~~~~v~~~i~-~l~~~----g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~ 260 (400)
.+|+.++++|- .+... ...+-.||.......+..++.++.+++.+.|+++..
T Consensus 143 --~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~~ 199 (432)
T TIGR01285 143 --DGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPII 199 (432)
T ss_pred --HHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceEE
Confidence 23777777653 33331 111234554432212346788888888888987644
No 481
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=31.10 E-value=1.9e+02 Score=24.26 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=23.7
Q ss_pred CccchhhHHHHHHHhhhcCCCceEEEEecC
Q 015808 143 EPTVRKDIEEACFHLSKLKGLKTLAMTTNG 172 (400)
Q Consensus 143 EPll~~~l~~~i~~~~~~~g~~~~~i~TNG 172 (400)
++-+.|++.++++.+++. |+ .+.+.||+
T Consensus 86 ~~~~~~g~~~~l~~l~~~-g~-~i~i~S~~ 113 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKK-GI-AVGLGSSS 113 (185)
T ss_pred CCCCCcCHHHHHHHHHHc-CC-eEEEEeCc
Confidence 456789999999999885 88 78899998
No 482
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=31.09 E-value=1.3e+02 Score=30.87 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEEE
Q 015808 211 HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 261 (400)
Q Consensus 211 ~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~~ 261 (400)
+......|+.+++.|+ ++.|-..-.+.-+++|+..+.+++.+.|+.+...
T Consensus 387 ~~NL~~Hi~n~~~fg~-pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v~ 436 (587)
T PRK13507 387 CANLLHHIGTVKKSGI-NPVVCINAFYTDTHAEIAIVRRLAEQAGARVAVS 436 (587)
T ss_pred HHHHHHHHHHHHHcCC-CeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 6777888888888999 8777766655457789999999999999865543
No 483
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=30.98 E-value=3e+02 Score=25.17 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEECCC-ccc--h---h----hHHHHHHHhhhcCCCceEEEEecCcc----h-h-hh
Q 015808 115 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTV--R---K----DIEEACFHLSKLKGLKTLAMTTNGLT----L-A-RK 178 (400)
Q Consensus 115 ~~~s~e~i~~ii~~~~~~g~~~i~~~GGE-Pll--~---~----~l~~~i~~~~~~~g~~~~~i~TNG~l----l-~-~~ 178 (400)
.....+.+.+.++.+..+|...|.+..|- +.. . . .+.++++.+++ .|+ .+.+.+-+.. . + +.
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gi-~l~lEn~~~~~~~~~~t~~~ 157 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAET-KGV-VIALETMAGQGNEIGSSFEE 157 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccC-CCC-EEEEeCCCCCCCCCCCCHHH
Confidence 33457788888999999999988886653 311 1 1 13344444444 477 7888774333 1 1 44
Q ss_pred HHHHH-HcC-CCeEEEecCCC
Q 015808 179 LPKLK-ESG-LTSVNISLDTL 197 (400)
Q Consensus 179 ~~~l~-~~g-~~~i~iSldg~ 197 (400)
+..++ +.+ -..+.+.+|..
T Consensus 158 ~~~li~~v~~~~~~g~~lD~~ 178 (279)
T cd00019 158 LKEIIDLIKEKPRVGVCIDTC 178 (279)
T ss_pred HHHHHHhcCCCCCeEEEEEhh
Confidence 44444 444 45788888885
No 484
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=30.98 E-value=3.1e+02 Score=26.26 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=4.5
Q ss_pred HHHHHHHhhh
Q 015808 150 IEEACFHLSK 159 (400)
Q Consensus 150 l~~~i~~~~~ 159 (400)
..++++.+.+
T Consensus 243 ~~~~~~~l~~ 252 (338)
T cd02933 243 FSYLAKELNK 252 (338)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 485
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=30.98 E-value=4e+02 Score=24.05 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEC--CCccch-hhHHHHHHHhhhcCCCceEE----EEecCcchhhhHHHHHHcCCCeE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTG--GEPTVR-KDIEEACFHLSKLKGLKTLA----MTTNGLTLARKLPKLKESGLTSV 190 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~-~~l~~~i~~~~~~~g~~~~~----i~TNG~ll~~~~~~l~~~g~~~i 190 (400)
..+.+.+-|+..++.|...|.|.. .+=.+. +-+.++++..... ++ .++ ...| ..+.++.+.+.|+.+|
T Consensus 71 E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL-~v-TFHrAFD~~~d---~~~ale~li~~Gv~RI 145 (241)
T COG3142 71 ELEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGL-GV-TFHRAFDECPD---PLEALEQLIELGVERI 145 (241)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCC-ce-eeehhhhhcCC---HHHHHHHHHHCCCcEE
Confidence 355666677778889999998865 333343 3356676665542 33 222 2233 3466788999999888
Q ss_pred EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHH
Q 015808 191 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 251 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~ 251 (400)
-.|=-.. +-..-+..|+.|.+..-.. +.+..-.|.+.+.+.++.+..
T Consensus 146 LTsGg~~------------sa~eg~~~l~~li~~a~gr--i~Im~GaGV~~~N~~~l~~~t 192 (241)
T COG3142 146 LTSGGKA------------SALEGLDLLKRLIEQAKGR--IIIMAGAGVRAENIAELVLLT 192 (241)
T ss_pred ecCCCcC------------chhhhHHHHHHHHHHhcCC--EEEEeCCCCCHHHHHHHHHhc
Confidence 7772221 1122233334444332112 344455567777777776543
No 486
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised. ; PDB: 3BH1_B.
Probab=30.80 E-value=5.5e+02 Score=25.56 Aligned_cols=72 Identities=13% Similarity=0.040 Sum_probs=46.8
Q ss_pred eEEEecCCCCHHHHHHhhcCCC--H-HHHHHHHHHHHHcCCCcEEEEEE-EecCCChhHHHHHHHHHHhCCCeEEEEeee
Q 015808 189 SVNISLDTLVPAKFEFLTRRKG--H-EKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPINIRFIEFM 264 (400)
Q Consensus 189 ~i~iSldg~~~~~~~~ir~~~~--~-~~v~~~i~~l~~~g~~~v~i~~~-v~~~~n~~el~~l~~~~~~~gv~~~~~~~~ 264 (400)
.|.|.+.+. +-..+++|+.-+ | ..+++-|+.+++.|+ . |+.| +++-.+......+.+.+..+|+.+......
T Consensus 66 EIvI~I~A~-DIe~nKvR~DlGItYd~dVLRLid~fr~~gl-~--V~sVVIT~y~~q~~a~~F~~kLe~~gIkvy~Hy~i 141 (491)
T PF08903_consen 66 EIVICINAG-DIERNKVRGDLGITYDQDVLRLIDDFRSRGL-Y--VGSVVITQYEGQPAADAFKNKLERLGIKVYRHYPI 141 (491)
T ss_dssp EEEEEEECH-HHHTT-BETTTSSBHHHHHHHHHHHHHHTT--E--EEEEEEECE-T-HHHHHHHHHHHTTT-EEEEEE--
T ss_pred eEEEEEEhh-hHhhccccccCCCCHhHHHHHHHHHHHhcCc-e--eeeEEEEecCCCHHHHHHHHHHHHCCCcEEEecCc
Confidence 677888774 445567777555 4 789999999999998 4 3443 444234456788899999999987665444
No 487
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=30.78 E-value=6.1e+02 Score=26.06 Aligned_cols=118 Identities=14% Similarity=0.224 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEC--CCccchh-hHHHHHHHhhhcCCCceEEEEec---CcchhhhHHHHHHcCCCeEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTG--GEPTVRK-DIEEACFHLSKLKGLKTLAMTTN---GLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~~-~l~~~i~~~~~~~g~~~~~i~TN---G~ll~~~~~~l~~~g~~~i~ 191 (400)
+++.+.++++.+.+.|...|.|.- | .+.| ++.++++.+++..++ .+.+.+. |.-+-..+.. +.+|.+.|.
T Consensus 156 d~~~l~~~~~~~~~~Gad~i~l~DTvG--~~~P~~v~~li~~l~~~~~v-~i~~H~HND~GlA~ANslaA-i~aGa~~Vd 231 (524)
T PRK12344 156 NPEYALATLKAAAEAGADWVVLCDTNG--GTLPHEVAEIVAEVRAAPGV-PLGIHAHNDSGCAVANSLAA-VEAGARQVQ 231 (524)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEccCCC--CcCHHHHHHHHHHHHHhcCC-eEEEEECCCCChHHHHHHHH-HHhCCCEEE
Confidence 455666666666666666666632 1 1122 244555555443233 3444432 2222222222 345677777
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
.|+.|.-+. .|....+.++-++... .|+ .+ .++.+.+.+.++.+++.+
T Consensus 232 ~Tl~GlGER-----aGNa~lE~lv~~L~~~--~g~-~~------~t~idl~~l~~is~~v~~ 279 (524)
T PRK12344 232 GTINGYGER-----CGNANLCSIIPNLQLK--MGY-EC------LPEEKLKELTEVSRFVSE 279 (524)
T ss_pred Eeccccccc-----ccCcCHHHHHHHHHhc--cCC-CC------CCCcCHHHHHHHHHHHHH
Confidence 777775431 1222266666555322 233 11 124666666666666554
No 488
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=30.75 E-value=4.4e+02 Score=24.47 Aligned_cols=14 Identities=29% Similarity=0.152 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHcCC
Q 015808 213 KVMESINAAIEVGY 226 (400)
Q Consensus 213 ~v~~~i~~l~~~g~ 226 (400)
..+.|.-.+.++|.
T Consensus 216 la~AN~laA~~aG~ 229 (279)
T cd07947 216 KAVANAVAAWLYGA 229 (279)
T ss_pred hHHHHHHHHHHhCC
Confidence 34444444444454
No 489
>PRK08508 biotin synthase; Provisional
Probab=30.70 E-value=4.4e+02 Score=24.39 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=49.9
Q ss_pred chhh-HHHHHHHhhhcCCCceEEEEecCcchh----hh----HHHHHHcCCC-eEEEecCCCCHHHHHHhhcCCCHHHHH
Q 015808 146 VRKD-IEEACFHLSKLKGLKTLAMTTNGLTLA----RK----LPKLKESGLT-SVNISLDTLVPAKFEFLTRRKGHEKVM 215 (400)
Q Consensus 146 l~~~-l~~~i~~~~~~~g~~~~~i~TNG~ll~----~~----~~~l~~~g~~-~i~iSldg~~~~~~~~ir~~~~~~~v~ 215 (400)
+.++ +.+.++++.+. |+..+.++|+|..++ +. ++.+++.+.. .+..|.--.++
T Consensus 40 ~s~eeI~~~a~~a~~~-g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~---------------- 102 (279)
T PRK08508 40 KDIEQIVQEAKMAKAN-GALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASV---------------- 102 (279)
T ss_pred CCHHHHHHHHHHHHHC-CCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCH----------------
Confidence 4444 66666666664 666888888776442 12 2334444321 22223222223
Q ss_pred HHHHHHHHcCCCcEEEEE--------EEecCCChhHHHHHHHHHHhCCCeEE
Q 015808 216 ESINAAIEVGYNPVKVNC--------VVMRGFNDDEICDFVELTRDRPINIR 259 (400)
Q Consensus 216 ~~i~~l~~~g~~~v~i~~--------~v~~~~n~~el~~l~~~~~~~gv~~~ 259 (400)
+.++.|+++|+..+.++. -+.++.+.++..+.++.+++.|+.+.
T Consensus 103 e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 154 (279)
T PRK08508 103 EQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLC 154 (279)
T ss_pred HHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeec
Confidence 334445555542222111 11223466778888888999887543
No 490
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=30.65 E-value=1.6e+02 Score=25.48 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=34.8
Q ss_pred HHHHHHHH--HHHHhCCCCEEEEECCCccchhhHHHHHHHhhhc-CCCceEEEEecC
Q 015808 119 LNEILRLA--YLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNG 172 (400)
Q Consensus 119 ~e~i~~ii--~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~-~g~~~~~i~TNG 172 (400)
.+++.+.+ ......|-..+.+..|+|+++--...+++.+.+. .|+ .+.+...-
T Consensus 60 ~~~~~~~i~~~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi-~v~iiPGi 115 (210)
T PF00590_consen 60 YDEIAEIIEAIEAAKEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGI-EVEIIPGI 115 (210)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTC-EEEEE--T
T ss_pred hhHHHHHHHHHHHHhccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCC-ceEEEecC
Confidence 55555655 3334455556777899999997778888888762 477 67765443
No 491
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=30.62 E-value=3.3e+02 Score=23.03 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhh-cCCCceEEEEecCcchh----hhHHHHHHcCCCeEEE
Q 015808 118 SLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSK-LKGLKTLAMTTNGLTLA----RKLPKLKESGLTSVNI 192 (400)
Q Consensus 118 s~e~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~-~~g~~~~~i~TNG~ll~----~~~~~l~~~g~~~i~i 192 (400)
..+-+..+++.+.+.+ ..|.|.||.|-....+ .+.+++ .+++ .+.-..+|+.-. +.+..+.+.+.+.|-|
T Consensus 31 g~dl~~~ll~~~~~~~-~~v~llG~~~~~~~~~---~~~l~~~yp~l-~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 31 GSDLMPALLELAAQKG-LRVFLLGAKPEVLEKA---AERLRARYPGL-KIVGYHHGYFGPEEEEEIIERINASGADILFV 105 (171)
T ss_pred cHHHHHHHHHHHHHcC-CeEEEECCCHHHHHHH---HHHHHHHCCCc-EEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 3566667777766554 6899999988554444 444443 3466 444446777642 2257778888999999
Q ss_pred ecCCCCHHH
Q 015808 193 SLDTLVPAK 201 (400)
Q Consensus 193 Sldg~~~~~ 201 (400)
.+-.+..|.
T Consensus 106 glG~PkQE~ 114 (171)
T cd06533 106 GLGAPKQEL 114 (171)
T ss_pred ECCCCHHHH
Confidence 998865443
No 492
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=30.62 E-value=4.6e+02 Score=24.60 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=36.5
Q ss_pred HHhCCCCEEEEEC---CCccchhh---------HHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCCCeEEEe
Q 015808 129 FVTSGVDKIRLTG---GEPTVRKD---------IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 193 (400)
Q Consensus 129 ~~~~g~~~i~~~G---GEPll~~~---------l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~~~i~iS 193 (400)
+.+.|...|.+.- +..++.|+ +.++++.+++. |. .+.+.+-|.. ...+..+.+.|.+.+++.
T Consensus 177 ~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~-g~-~~~lH~cG~~-~~~~~~l~~~~~d~~~~d 250 (330)
T cd03465 177 LIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL-GG-PVIHHNCGDT-APILELMADLGADVFSID 250 (330)
T ss_pred HHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc-CC-ceEEEECCCc-hhHHHHHHHhCCCeEeec
Confidence 3445777777652 33444443 34667777764 55 4566665643 355788888888765543
No 493
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=30.47 E-value=1.6e+02 Score=26.88 Aligned_cols=48 Identities=10% Similarity=-0.023 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCEEEEECCCccchhhHHHHHHHhhhcC--CCceEEEE
Q 015808 121 EILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK--GLKTLAMT 169 (400)
Q Consensus 121 ~i~~ii~~~~~~g~~~i~~~GGEPll~~~l~~~i~~~~~~~--g~~~~~i~ 169 (400)
++.+.+.+....|-+.+.+.+|+|+++--+..+++.+.... ++ .+.+.
T Consensus 90 ~~a~~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~~~~~-~vevV 139 (249)
T TIGR02434 90 IWAQAIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRALGGVPF-DYEVI 139 (249)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHhcCCCC-CEEEE
Confidence 45556655556676788889999999877777777776532 44 45554
No 494
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=30.29 E-value=77 Score=32.41 Aligned_cols=50 Identities=22% Similarity=0.209 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHhCCCeEEE
Q 015808 210 GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRF 260 (400)
Q Consensus 210 ~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~~gv~~~~ 260 (400)
+|....+.|+.+++.|+ ++.|-..-.+.-+++|++.+.+++.+.|+.+..
T Consensus 356 G~~NL~rHIeNik~fGv-pvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~~av 405 (557)
T PF01268_consen 356 GFANLERHIENIKKFGV-PVVVAINRFPTDTDAEIELIRELCEELGVRAAV 405 (557)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEEE--TTS-HHHHHHHHHHCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHhcCC-CeEEEecCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 38888888889999999 777776666655788999999999999887444
No 495
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=30.18 E-value=4.2e+02 Score=23.97 Aligned_cols=100 Identities=20% Similarity=0.322 Sum_probs=57.5
Q ss_pred CCC-ccchhhHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHcCC-CeEEEecCCCCHHHHHHhhcCCCHHHHHHHH
Q 015808 141 GGE-PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL-TSVNISLDTLVPAKFEFLTRRKGHEKVMESI 218 (400)
Q Consensus 141 GGE-Pll~~~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~g~-~~i~iSldg~~~~~~~~ir~~~~~~~v~~~i 218 (400)
||+ |.-..+..+++..+.+..+...+-|.- ....+.+.++.+... ..+.+|.+.++ +..+++.+++.+
T Consensus 70 GG~~~~~~~~~i~ll~~la~~~~~d~iDiEl--~~~~~~~~~~~~~~~~~~vI~SyH~F~--------~TP~~~~i~~~l 139 (231)
T COG0710 70 GGEFPGSEEEYIELLKKLAELNGPDYIDIEL--SSPEDDVKEIIKFAKKHGVIVSYHDFE--------KTPPLEEIIERL 139 (231)
T ss_pred cCCCCCCHHHHHHHHHHHHhhcCCCEEEEEc--cCcchhHHHHHhccccCCEEEEeccCC--------CCCcHHHHHHHH
Confidence 777 555555566666666643322222221 111122233332211 11777765542 234588999999
Q ss_pred HHHHHcCCCcEEEEEEEecCCChhHHHHHHHHHHh
Q 015808 219 NAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 253 (400)
Q Consensus 219 ~~l~~~g~~~v~i~~~v~~~~n~~el~~l~~~~~~ 253 (400)
..+.+.|. . .+.+.+++ .|.+++..+++...+
T Consensus 140 ~km~~~~a-D-ivKiAvm~-~~~~DvL~ll~~~~~ 171 (231)
T COG0710 140 DKMESLGA-D-IVKIAVMP-QSKEDVLDLLEATRE 171 (231)
T ss_pred HHHHhhCC-C-eEEEEecC-CCHHHHHHHHHHHHh
Confidence 99999986 2 35666777 588888888888775
No 496
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=30.09 E-value=2.9e+02 Score=22.54 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEC--CCccchhhHHHHHHHhhhcCCCceEEEEecCcc-h-hhh----HHHHHHc
Q 015808 114 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT-L-ARK----LPKLKES 185 (400)
Q Consensus 114 ~~~~s~e~i~~ii~~~~~~g~~~i~~~G--GEPll~~~l~~~i~~~~~~~g~~~~~i~TNG~l-l-~~~----~~~l~~~ 185 (400)
....++|++.+.+. +.+..-|.++. |.- ...+.++++.+++. |+..+.+.--|.+ + ++. ..+|.+.
T Consensus 36 G~~v~~e~~v~aa~---~~~adiVglS~l~~~~--~~~~~~~~~~l~~~-gl~~~~vivGG~~vi~~~d~~~~~~~l~~~ 109 (134)
T TIGR01501 36 GVLSPQEEFIKAAI---ETKADAILVSSLYGHG--EIDCKGLRQKCDEA-GLEGILLYVGGNLVVGKQDFPDVEKRFKEM 109 (134)
T ss_pred CCCCCHHHHHHHHH---HcCCCEEEEecccccC--HHHHHHHHHHHHHC-CCCCCEEEecCCcCcChhhhHHHHHHHHHc
Confidence 34466777655554 55666777766 422 23456667777664 5433334445543 2 222 2457787
Q ss_pred CCCeE
Q 015808 186 GLTSV 190 (400)
Q Consensus 186 g~~~i 190 (400)
|++.+
T Consensus 110 Gv~~v 114 (134)
T TIGR01501 110 GFDRV 114 (134)
T ss_pred CCCEE
Confidence 76543
No 497
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=29.97 E-value=4.4e+02 Score=24.20 Aligned_cols=130 Identities=16% Similarity=0.114 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECCCccch--h-hHHHHHHHhhhcCCCceEEEEecCcchhhhHHHHHHc--CCCeE
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR--K-DIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKES--GLTSV 190 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~~~GGEPll~--~-~l~~~i~~~~~~~g~~~~~i~TNG~ll~~~~~~l~~~--g~~~i 190 (400)
.-+.+.+.+.+.++.+.|..-|.+.|| +... + .+..+++.+.+..++ .++|.|.- .+.++.-++. |. .+
T Consensus 21 ~~d~~~i~~~A~~~~~~GAdiIDVg~~-~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~---~~v~eaaL~~~~G~-~i 94 (261)
T PRK07535 21 AKDAAFIQKLALKQAEAGADYLDVNAG-TAVEEEPETMEWLVETVQEVVDV-PLCIDSPN---PAAIEAGLKVAKGP-PL 94 (261)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCC-CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCC---HHHHHHHHHhCCCC-CE
Confidence 356778888888888889887887765 3322 2 266777777764466 68887743 2334444443 55 34
Q ss_pred EEecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC--C----hhHHHHHHHHHHhCCCeEEEEeee
Q 015808 191 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGF--N----DDEICDFVELTRDRPINIRFIEFM 264 (400)
Q Consensus 191 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~--n----~~el~~l~~~~~~~gv~~~~~~~~ 264 (400)
.=|+.+.. ..++.+ +..+.++|. ++.+...-..|. + .+.+.++++.+.+.|+.-.-+-+-
T Consensus 95 INsIs~~~----------~~~~~~---~~l~~~~g~-~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilD 160 (261)
T PRK07535 95 INSVSAEG----------EKLEVV---LPLVKKYNA-PVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYID 160 (261)
T ss_pred EEeCCCCC----------ccCHHH---HHHHHHhCC-CEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEe
Confidence 45555531 012333 345567777 555443311221 2 244677788888889853344444
Q ss_pred c
Q 015808 265 P 265 (400)
Q Consensus 265 p 265 (400)
|
T Consensus 161 P 161 (261)
T PRK07535 161 P 161 (261)
T ss_pred C
Confidence 4
No 498
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=29.94 E-value=2.1e+02 Score=27.20 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCEEEEECCC--ccchh-hHHHHHHHhhhcCCCceEEEEecCcchh-hhHHHHHH-cCCCeEEEe
Q 015808 121 EILRLAYLFVTSGVDKIRLTGGE--PTVRK-DIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLKE-SGLTSVNIS 193 (400)
Q Consensus 121 ~i~~ii~~~~~~g~~~i~~~GGE--Pll~~-~l~~~i~~~~~~~g~~~~~i~TNG~ll~-~~~~~l~~-~g~~~i~iS 193 (400)
++..+++.+.+.|+..|.++|.. ..... --.++++.+++..+ +-|..||-..+ +.+.++++ .|++.|.|.
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~---iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS---IPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 44455555556666667766632 22211 11245555554322 34555665543 45555554 466666666
No 499
>PRK06801 hypothetical protein; Provisional
Probab=29.89 E-value=4.7e+02 Score=24.47 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEE-EECCCc-cch-hhHHHHHHHhhhcCCCceEEEEec-CcchhhhHHHHHHcCCCeEE
Q 015808 116 LLSLNEILRLAYLFVTSGVDKIR-LTGGEP-TVR-KDIEEACFHLSKLKGLKTLAMTTN-GLTLARKLPKLKESGLTSVN 191 (400)
Q Consensus 116 ~~s~e~i~~ii~~~~~~g~~~i~-~~GGEP-ll~-~~l~~~i~~~~~~~g~~~~~i~TN-G~ll~~~~~~l~~~g~~~i~ 191 (400)
..+.+.+..+++...+.+..-|. ++-|+- ... ..+..++..+.+...+ .|.+.-. |..+ +.+..-++.|++.|+
T Consensus 25 ~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~v-pV~lHlDH~~~~-e~i~~Ai~~GftSVm 102 (286)
T PRK06801 25 VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDI-PVVLNLDHGLHF-EAVVRALRLGFSSVM 102 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCH-HHHHHHHHhCCcEEE
Confidence 45789999999988887754433 322432 223 3366777777765566 6776654 4333 667777888999888
Q ss_pred EecCCCCHHHHHHhhcCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC------------hhHHHHHHHHHHhCCCeEE
Q 015808 192 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN------------DDEICDFVELTRDRPINIR 259 (400)
Q Consensus 192 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~~v~~~~n------------~~el~~l~~~~~~~gv~~~ 259 (400)
+.-...+ ++. ..+.+.+..+.+...|+ .|....-...+.. ..+.++..+|.++.|++.-
T Consensus 103 ~D~S~l~---~ee-----Ni~~t~~v~~~a~~~gv-~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~L 173 (286)
T PRK06801 103 FDGSTLE---YEE-----NVRQTREVVKMCHAVGV-SVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDAL 173 (286)
T ss_pred EcCCCCC---HHH-----HHHHHHHHHHHHHHcCC-eEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEE
Confidence 8433322 111 14556666667777787 5533321111111 1245777788878888765
Q ss_pred EEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 015808 260 FIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 290 (400)
Q Consensus 260 ~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 290 (400)
-+.+-+.++.. .....+.+ +.++.+.+..
T Consensus 174 AvaiGt~Hg~y-~~~~~l~~-e~l~~i~~~~ 202 (286)
T PRK06801 174 AVAIGNAHGKY-KGEPKLDF-ARLAAIHQQT 202 (286)
T ss_pred EeccCCCCCCC-CCCCCCCH-HHHHHHHHhc
Confidence 55444444322 11122333 4455555543
No 500
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.74 E-value=1.9e+02 Score=29.05 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEE
Q 015808 113 KPQLLSLNEILRLAYLFVTSGVDKIRLT 140 (400)
Q Consensus 113 ~~~~~s~e~i~~ii~~~~~~g~~~i~~~ 140 (400)
.+..++.+.++++|+.+...+...+.++
T Consensus 15 aR~f~~~~~ik~~Id~ma~~K~N~lHlH 42 (445)
T cd06569 15 ARNFHSKETVLKLLDQMAAYKLNKLHLH 42 (445)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCceEEEE
Confidence 4567899999999999987765555443
Done!