BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015809
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/411 (33%), Positives = 226/411 (54%), Gaps = 25/411 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+WS Y + ++V+K GLK+ + FH IP+P W+ QIG+ IFYT+
Sbjct: 67 QYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTN 126
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
++G + + LSL VD+ + G+T +++Y++F ESF+ + F+ I I +G G G
Sbjct: 127 RAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAG 186
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + PG+GEFQC D+ M+ ++ + GN W + G A +Y+++P
Sbjct: 187 ELRYPSYPE-TQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPG-KGAGTYNDTP 244
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
+ FF+ NG ++++ G FFL+WYS++LI HG+ +L A+ F V+I K+ IH
Sbjct: 245 DKTEFFRPNG-TYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHW 303
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WY SH +ELTAG YN A RDGY +A M A++ + +++ D QP E+ S+P+
Sbjct: 304 WYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQE 363
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDL----------FTYQR 346
L+ Q+ ++ K ++V+G+N+ + QM L N V+L TY R
Sbjct: 364 LVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLKL-RPNGVNLNGPPKLKMSGLTYLR 422
Query: 347 MGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQV 397
+ ++F F KFV+ ++H D P ++ +V +N+ I +
Sbjct: 423 LSDDLLQTDNFELFKKFVK-----KMHADLDPSPNAISPAVLERSNSAITI 468
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+GQN+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGQNALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 238 bits (607), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILTFTCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 237 bits (605), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFACLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 237 bits (605), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 237 bits (605), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 237 bits (604), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFSCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFVCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 214/388 (55%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
+LRYPS+ + ++ + PG+GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 QLRYPSYPQ-SQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 234 bits (598), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/386 (34%), Positives = 204/386 (52%), Gaps = 31/386 (8%)
Query: 4 YNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQ 58
Y+WS Y + E+V+K GLKL + FH IP+P WV +G IFYTD
Sbjct: 61 YDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDG 120
Query: 59 SGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGE 117
G + L+L VD+ P+ G++ +Q+Y ++ SF+ + K F+ I I +GLGP GE
Sbjct: 121 HGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGE 180
Query: 118 LRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPN 177
LRYPS+ + + PG+GEF C D+ + + A A G+P W P+DA Y+++P
Sbjct: 181 LRYPSYPQ-SHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF--PNDAGQYNDTPE 237
Query: 178 SNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSW 237
FF+DNG ++ S G FFL+WYS+ LI HG+ +L A+ F V + KI +H W
Sbjct: 238 RTQFFRDNG-TYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWW 296
Query: 238 YKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESL 297
YK SH +ELTAG YN RDGY +A M ++ + ++ D QP ++ S+PE L
Sbjct: 297 YKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQPPDAMSAPEEL 356
Query: 298 LAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKN---------------LFGENVVDLF 342
+ Q+ +A + G+ VS +N+ P + + +N LFG F
Sbjct: 357 VQQVLSAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFG------F 410
Query: 343 TYQRMGAYFFSPEHFPSFTKFVRNLN 368
TY R+ +++ +F FV ++
Sbjct: 411 TYLRLSNQLVEGQNYVNFKTFVDRMH 436
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 213/388 (54%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 62 QYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 121
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 122 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 181
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + P +GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 182 ELRYPSYPQ-SQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 238
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 239 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 297
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 298 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 357
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 358 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRL 417
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 418 SDDLLQKSNFNIFKKFV-----LKMHAD 440
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 213/388 (54%), Gaps = 24/388 (6%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+Y+W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT+
Sbjct: 66 QYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 125
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
+SG + K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + I I +GLGP G
Sbjct: 126 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
ELRYPS+ + ++ + P +GEFQC D+ + + G+P W L P DA Y++ P
Sbjct: 186 ELRYPSYPQ-SQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVP 242
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
S FFK NG ++ + G FFL+WYS++L++HG+ +L A+ F V + K+ IH
Sbjct: 243 ESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
WYK +H +ELTAG YN RDGY +A M +++ + +++ D QP ++ S P+
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRM 347
L+ Q+ + + + V+G+N+ + Q+ N + V + +F TY R+
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRL 421
Query: 348 GAYFFSPEHFPSFTKFVRNLNQLELHGD 375
+F F KFV L++H D
Sbjct: 422 SDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 202/386 (52%), Gaps = 31/386 (8%)
Query: 4 YNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQ 58
Y+WS Y + E+V+K GLKL + FH IP+P WV +G IFYTD
Sbjct: 65 YDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDG 124
Query: 59 SGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGE 117
G + L+L VD+ P+ G++ +Q+Y ++ SF+ + K F+ I I +GLGP GE
Sbjct: 125 HGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGE 184
Query: 118 LRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPN 177
+RYPS+ + + PG+GEF C D+ + + A A G+P W P+D Y+++P
Sbjct: 185 MRYPSYPQ-SHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF--PNDVGQYNDTPE 241
Query: 178 SNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSW 237
FF+DNG ++ S G FFL+WYS+ LI HG+ +L A+ F V + KI IH W
Sbjct: 242 RTQFFRDNG-TYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWW 300
Query: 238 YKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESL 297
YK SH +ELTAG YN RDGY +A M ++ + ++ D Q ++ S+PE L
Sbjct: 301 YKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEEL 360
Query: 298 LAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKN---------------LFGENVVDLF 342
+ Q+ +A + G+ V+ +N+ P + + +N LFG F
Sbjct: 361 VQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFG------F 414
Query: 343 TYQRMGAYFFSPEHFPSFTKFVRNLN 368
TY R+ +++ +F FV ++
Sbjct: 415 TYLRLSNQLVEGQNYANFKTFVDRMH 440
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 150/346 (43%), Gaps = 38/346 (10%)
Query: 3 KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
+++WS Y A V++ GLK + H IPLP W+S G S + + D
Sbjct: 54 QFDWSYYKTYANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKG-SADEMQFKD 112
Query: 58 QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGE 117
+SG S A+ L GK ++Y F E+F + +K + I I + GP GE
Sbjct: 113 ESGY----ANSEALSPLWSGTGKQYDELYASFAENF-AGYK----SIIPKIYLSGGPSGE 163
Query: 118 LRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANG------NPLWGLRGPHDAPS 171
LRYPS++ A S PG G+FQ N + N WG + + S
Sbjct: 164 LRYPSYYPAAGWS-YPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINAAWGTK--LTSLS 220
Query: 172 YDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGK 230
P F NGG + S YG FLSWY S L H + + A F GV I K
Sbjct: 221 QINPPTDGDGFYTNGG-YNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAK 279
Query: 231 IPLIHSWYKTR---SHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQP 287
I +H W H +E G Y+ Y + + F + +++SD
Sbjct: 280 ISGLH-WQMNNPAMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTA 332
Query: 288 RESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNL 333
++S P +L+ + + N GV ++G+N+ TG GF+++++ +
Sbjct: 333 -PNYSLPSTLVDTVSSIANAKGVRLNGENALPTGGS-GFQKIEEKI 376
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 153/351 (43%), Gaps = 37/351 (10%)
Query: 13 AEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCL 67
A+ V+ G+K+ + H +P+P WV +S S+++ ++G K L
Sbjct: 72 AQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGTVNKETL 130
Query: 68 SLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLA 127
+ D+ + Y E +F ++ KP+ I I + GP GELRYPS + +
Sbjct: 131 NPLASDVIRKE-------YGELYTAFAAAMKPYK-DVIAKIELSGGPAGELRYPS-YTTS 181
Query: 128 KSSKIPGVGEFQCC-----DRNMLNLLQQHAEANG-NPLWGLRGPHDAPSYDESPNSNSF 181
+ P G+FQ + L +L ++ N N WG + + P+
Sbjct: 182 DGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL--PPSDGEQ 239
Query: 182 FKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWYK- 239
F NG + S YG +L WY L +H + LA + F T V I KI +H Y
Sbjct: 240 FLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNN 297
Query: 240 -TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLL 298
T H +E AG YN Y+ + + F + ++++D+ E +S P++L+
Sbjct: 298 PTIPHGAEKPAG-YND-----YSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-YSMPKTLV 350
Query: 299 AQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVV--DLFTYQRM 347
I T N+ G+ ++G+N+ G ++++ + F N L YQ +
Sbjct: 351 QNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQDV 401
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 153/351 (43%), Gaps = 37/351 (10%)
Query: 13 AEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCL 67
A+ V+ G+K+ + H +P+P WV +S S+++ ++G K L
Sbjct: 72 AQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGTVNKETL 130
Query: 68 SLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLA 127
+ D+ + Y E +F ++ KP+ I I + GP GELRYPS+ +
Sbjct: 131 NPLASDVIRKE-------YGELYTAFAAAMKPYKDV-IAKIYLSGGPAGELRYPSY-TTS 181
Query: 128 KSSKIPGVGEFQCC-----DRNMLNLLQQHAEANG-NPLWGLRGPHDAPSYDESPNSNSF 181
+ P G+FQ + L +L ++ N N WG + + P+
Sbjct: 182 DGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL--PPSDGEQ 239
Query: 182 FKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWYK- 239
F NG + S YG +L WY L +H + LA + F T V I KI +H Y
Sbjct: 240 FLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNN 297
Query: 240 -TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLL 298
T H +E AG YN Y+ + + F + ++++D+ E +S P++L+
Sbjct: 298 PTIPHGAEKPAG-YN-----DYSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-YSMPKTLV 350
Query: 299 AQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVV--DLFTYQRM 347
I T N+ G+ ++G+N+ G ++++ + F N L YQ +
Sbjct: 351 QNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQDV 401
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 153/351 (43%), Gaps = 37/351 (10%)
Query: 13 AEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCL 67
A+ V+ G+K+ + H +P+P WV +S S+++ ++G K L
Sbjct: 72 AQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGTVNKETL 130
Query: 68 SLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLA 127
+ D+ + Y E +F ++ KP+ I I + GP GELRYPS+ +
Sbjct: 131 NPLASDVIRKE-------YGELYTAFAAAMKPYKDV-IAKIFLSGGPAGELRYPSY-TTS 181
Query: 128 KSSKIPGVGEFQCC-----DRNMLNLLQQHAEANG-NPLWGLRGPHDAPSYDESPNSNSF 181
+ P G+FQ + L +L ++ N N WG + + P+
Sbjct: 182 DGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL--PPSDGEQ 239
Query: 182 FKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWYK- 239
F NG + S YG +L WY L +H + LA + F T V I KI +H Y
Sbjct: 240 FLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNN 297
Query: 240 -TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLL 298
T H +E AG YN Y+ + + F + ++++D+ E +S P++L+
Sbjct: 298 PTIPHGAEKPAG-YN-----DYSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-YSMPKTLV 350
Query: 299 AQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVV--DLFTYQRM 347
I T N+ G+ ++G+N+ G ++++ + F N L YQ +
Sbjct: 351 QNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQDV 401
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 153/351 (43%), Gaps = 37/351 (10%)
Query: 13 AEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCL 67
A+ V+ G+K+ + H +P+P WV +S S+++ ++G K L
Sbjct: 72 AQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGTVNKETL 130
Query: 68 SLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLA 127
+ D+ + Y E +F ++ KP+ I I + GP GELRYPS + +
Sbjct: 131 NPLASDVIRKE-------YGELYTAFAAAMKPYK-DVIAKIELSGGPAGELRYPS-YTTS 181
Query: 128 KSSKIPGVGEFQCC-----DRNMLNLLQQHAEANG-NPLWGLRGPHDAPSYDESPNSNSF 181
+ P G+FQ + L +L ++ N N WG + + P+
Sbjct: 182 DGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL--PPSDGEQ 239
Query: 182 FKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWYK- 239
F NG + S YG +L WY L +H + LA + F T V I KI +H Y
Sbjct: 240 FLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNN 297
Query: 240 -TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLL 298
T H +E AG YN Y+ + + F + ++++D+ E +S P++L+
Sbjct: 298 PTIPHGAEKPAG-YND-----YSHLLDAFKSAKLDVNFTCLEMTDKGSYPE-YSMPKTLV 350
Query: 299 AQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVV--DLFTYQRM 347
I T N+ G+ ++G+N+ G ++++ + F N L YQ +
Sbjct: 351 QNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQDV 401
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 152/351 (43%), Gaps = 37/351 (10%)
Query: 13 AEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCL 67
A+ V+ G+K+ + H +P+P WV +S S+++ ++G K L
Sbjct: 72 AQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGTVNKETL 130
Query: 68 SLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLA 127
+ D+ + Y E +F ++ KP+ I I + GP G LRYPS+ +
Sbjct: 131 NPLASDVIRKE-------YGELYTAFAAAMKPYK-DVIAKIYLSGGPAGALRYPSY-TTS 181
Query: 128 KSSKIPGVGEFQCC-----DRNMLNLLQQHAEANG-NPLWGLRGPHDAPSYDESPNSNSF 181
+ P G+FQ + L +L ++ N N WG + + P+
Sbjct: 182 DGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL--PPSDGEQ 239
Query: 182 FKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWYK- 239
F NG + S YG +L WY L +H + LA + F T V I KI +H Y
Sbjct: 240 FLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNN 297
Query: 240 -TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLL 298
T H +E AG YN Y+ + + F + ++++D+ E +S P++L+
Sbjct: 298 PTIPHGAEKPAG-YND-----YSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-YSMPKTLV 350
Query: 299 AQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVV--DLFTYQRM 347
I T N+ G+ ++G+N+ G ++++ + F N L YQ +
Sbjct: 351 QNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQDV 401
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 264 AEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSG 314
A++F +N CKMI+ G ++ + +L + A N GV VSG
Sbjct: 340 ADLFIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAA-NAGGVAVSG 389
>pdb|3Q87|A Chain A, Structure Of Eukaryotic Translation Termination Complex
Methyltransferase Mtq2-Trm112
Length = 125
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 295 ESLLAQIRTACNKHGVEVSGQN-SSVTGAPGGFEQMKKNLFGENVVD 340
E L + + + + HG E+S Q+ SS PG E++K+ LFG +VV+
Sbjct: 51 ERLKSLVNSLRDFHGRELSEQDISSFVENPGDDEKIKEFLFGIDVVE 97
>pdb|4EPS|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_04982)
From Bacteroides Ovatus Atcc 8483 At 1.85 A Resolution
Length = 510
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 175 SPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLI 234
+P + +KD G+ + D L SH NC+ L S + ETG I
Sbjct: 302 NPXPSVLYKDVAGTPYTATNDALLR-------SHPNCVHGLVXSLYTETGKFSPALTQSI 354
Query: 235 HSWYKTRSHPS 245
H W+ T S S
Sbjct: 355 HDWFXTTSFTS 365
>pdb|3BH0|A Chain A, Atpase Domain Of G40p
Length = 315
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 311 EVSGQNSSVTGAPGGFEQMKKNLFG---ENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNL 367
E+ + ++TG P GF ++ + +G N V + MG F+ + + + N
Sbjct: 40 EIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND 96
Query: 368 NQLELHGDDLPVEEEVTESVHTNANTNIQ-VQAA 400
+ + LH ++ +E + + T + N Q ++AA
Sbjct: 97 DVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAA 130
>pdb|3BGW|A Chain A, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|B Chain B, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|C Chain C, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|D Chain D, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|E Chain E, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|F Chain F, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
Length = 444
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 311 EVSGQNSSVTGAPGGFEQMKKNLFG---ENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNL 367
E+ + ++TG P GF ++ + +G N V + MG F+ + + + N
Sbjct: 169 EIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND 225
Query: 368 NQLELHGDDLPVEEEVTESVHTNANTNIQ-VQAA 400
+ + LH ++ +E + + T + N Q ++AA
Sbjct: 226 DVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAA 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,973,700
Number of Sequences: 62578
Number of extensions: 565263
Number of successful extensions: 1393
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1278
Number of HSP's gapped (non-prelim): 31
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)