Query 015809
Match_columns 400
No_of_seqs 121 out of 185
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 09:46:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00197 beta-amylase; Provisi 100.0 4E-173 9E-178 1326.6 36.3 396 1-397 158-566 (573)
2 PLN02803 beta-amylase 100.0 5E-172 1E-176 1315.5 36.8 397 1-399 138-546 (548)
3 PLN02801 beta-amylase 100.0 2E-169 5E-174 1290.7 37.5 389 1-393 68-471 (517)
4 PLN02161 beta-amylase 100.0 2E-169 5E-174 1290.6 36.6 370 1-370 148-530 (531)
5 PLN02905 beta-amylase 100.0 2E-166 4E-171 1287.5 36.5 366 1-371 317-696 (702)
6 PLN02705 beta-amylase 100.0 2E-164 4E-169 1270.4 36.3 367 1-372 299-677 (681)
7 PF01373 Glyco_hydro_14: Glyco 100.0 6E-150 1E-154 1128.5 22.0 342 1-363 47-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 98.5 1.8E-06 3.9E-11 86.7 13.7 187 1-234 41-238 (374)
9 PF01301 Glyco_hydro_35: Glyco 94.0 0.11 2.5E-06 52.1 6.2 84 1-110 54-146 (319)
10 smart00633 Glyco_10 Glycosyl h 93.6 3.9 8.5E-05 39.3 15.6 184 1-284 10-195 (254)
11 COG3693 XynA Beta-1,4-xylanase 83.3 16 0.00034 37.9 11.6 185 1-285 76-264 (345)
12 PF00331 Glyco_hydro_10: Glyco 81.8 18 0.0004 36.2 11.5 193 1-288 53-250 (320)
13 TIGR03356 BGL beta-galactosida 79.9 7.7 0.00017 40.6 8.3 70 6-110 93-164 (427)
14 PF00150 Cellulase: Cellulase 76.4 5.5 0.00012 37.2 5.5 69 5-111 60-128 (281)
15 COG1874 LacA Beta-galactosidas 72.3 34 0.00075 38.5 11.1 167 2-220 62-249 (673)
16 PLN03059 beta-galactosidase; P 71.6 25 0.00054 40.4 10.0 121 1-166 89-224 (840)
17 PRK15014 6-phospho-beta-glucos 64.5 12 0.00026 40.0 5.5 76 2-111 105-182 (477)
18 PRK09852 cryptic 6-phospho-bet 63.4 12 0.00027 39.9 5.3 75 2-110 107-183 (474)
19 PF14871 GHL6: Hypothetical gl 62.7 28 0.00061 31.0 6.7 73 9-98 46-120 (132)
20 PRK09589 celA 6-phospho-beta-g 61.9 14 0.0003 39.5 5.4 71 6-110 107-179 (476)
21 PF00232 Glyco_hydro_1: Glycos 60.0 7.5 0.00016 40.8 3.0 71 5-110 97-169 (455)
22 PRK13511 6-phospho-beta-galact 59.9 13 0.00029 39.4 4.9 71 5-111 92-164 (469)
23 COG2723 BglB Beta-glucosidase/ 55.3 52 0.0011 35.5 8.2 105 7-155 100-206 (460)
24 PF04187 DUF399: Protein of un 46.6 14 0.00031 35.1 2.3 23 4-26 86-108 (213)
25 TIGR01233 lacG 6-phospho-beta- 44.1 79 0.0017 33.7 7.6 69 6-110 92-162 (467)
26 PF01902 ATP_bind_4: ATP-bindi 43.0 39 0.00085 32.6 4.7 59 260-318 123-181 (218)
27 PF09184 PPP4R2: PPP4R2; Inte 41.7 6 0.00013 39.7 -1.1 31 340-370 96-127 (288)
28 PLN02814 beta-glucosidase 41.1 41 0.00088 36.3 4.9 70 7-110 117-188 (504)
29 TIGR03679 arCOG00187 arCOG0018 40.9 56 0.0012 31.1 5.3 59 260-318 124-182 (218)
30 COG2019 AdkA Archaeal adenylat 39.9 45 0.00098 32.0 4.4 78 14-108 73-168 (189)
31 PRK09593 arb 6-phospho-beta-gl 39.0 1.3E+02 0.0027 32.4 8.2 72 6-111 113-186 (478)
32 TIGR02884 spore_pdaA delta-lac 37.9 77 0.0017 30.0 5.8 82 261-350 142-223 (224)
33 PLN02998 beta-glucosidase 37.2 50 0.0011 35.6 4.9 71 6-110 121-193 (497)
34 PLN02849 beta-glucosidase 36.8 56 0.0012 35.3 5.1 71 6-110 118-190 (503)
35 TIGR03056 bchO_mg_che_rel puta 36.6 1.5E+02 0.0032 26.9 7.2 77 229-310 11-94 (278)
36 PRK02412 aroD 3-dehydroquinate 34.6 1.3E+02 0.0027 29.4 6.8 86 9-118 124-211 (253)
37 PF10255 Paf67: RNA polymerase 34.1 29 0.00063 36.7 2.5 32 5-48 6-38 (404)
38 PRK04175 rpl7ae 50S ribosomal 33.5 1.2E+02 0.0026 26.7 5.8 45 257-312 32-76 (122)
39 KOG0622 Ornithine decarboxylas 31.6 51 0.0011 35.3 3.7 28 9-37 195-222 (448)
40 PF06336 Corona_5a: Coronaviru 31.4 27 0.00058 27.8 1.2 21 188-208 2-22 (65)
41 cd00502 DHQase_I Type I 3-dehy 30.4 2.3E+02 0.0049 26.7 7.6 81 67-151 140-221 (225)
42 TIGR00289 conserved hypothetic 30.2 98 0.0021 30.1 5.2 56 262-318 125-180 (222)
43 TIGR03677 rpl7ae 50S ribosomal 28.7 1.6E+02 0.0034 25.7 5.8 45 257-312 28-72 (117)
44 smart00391 MBD Methyl-CpG bind 27.7 40 0.00086 27.6 1.7 31 32-62 1-39 (77)
45 TIGR00290 MJ0570_dom MJ0570-re 27.6 1.2E+02 0.0025 29.6 5.2 59 260-318 123-181 (223)
46 cd04871 ACT_PSP_2 ACT domains 27.3 56 0.0012 26.6 2.6 35 277-315 49-83 (84)
47 PF03869 Arc: Arc-like DNA bin 27.2 37 0.00081 25.5 1.4 25 291-315 9-33 (50)
48 PF00070 Pyr_redox: Pyridine n 27.2 1.9E+02 0.0042 22.4 5.5 47 262-314 13-59 (80)
49 TIGR03006 pepcterm_polyde poly 27.0 91 0.002 30.8 4.4 25 258-282 28-52 (265)
50 PF04854 DUF624: Protein of un 26.6 51 0.0011 25.9 2.1 23 78-100 37-59 (77)
51 PF14871 GHL6: Hypothetical gl 26.3 1.7E+02 0.0036 26.1 5.6 51 262-314 4-62 (132)
52 COG2388 Predicted acetyltransf 25.0 42 0.00091 28.9 1.5 22 9-30 61-82 (99)
53 TIGR01093 aroD 3-dehydroquinat 24.8 1.9E+02 0.0042 27.4 6.1 51 65-119 143-194 (228)
54 PF01487 DHquinase_I: Type I 3 24.3 1.1E+02 0.0024 28.6 4.4 50 65-118 138-188 (224)
55 TIGR00677 fadh2_euk methylenet 23.0 79 0.0017 31.5 3.2 45 4-48 171-225 (281)
56 TIGR00676 fadh2 5,10-methylene 22.8 65 0.0014 31.6 2.5 45 4-48 167-221 (272)
57 COG0685 MetF 5,10-methylenetet 22.8 68 0.0015 32.1 2.7 45 4-48 185-239 (291)
58 PRK05692 hydroxymethylglutaryl 22.8 3.1E+02 0.0067 27.3 7.3 74 6-99 119-199 (287)
59 PRK08417 dihydroorotase; Provi 22.6 1.5E+02 0.0032 30.4 5.1 56 239-318 173-228 (386)
60 PRK01018 50S ribosomal protein 22.5 2.3E+02 0.005 23.9 5.5 43 258-312 19-61 (99)
61 PRK09432 metF 5,10-methylenete 22.3 79 0.0017 31.7 3.1 46 4-49 186-241 (296)
62 TIGR02764 spore_ybaN_pdaB poly 22.3 1.6E+02 0.0034 26.7 4.8 80 261-349 110-189 (191)
63 PF14258 DUF4350: Domain of un 21.3 1.1E+02 0.0023 23.5 3.0 24 5-28 3-26 (70)
64 PRK13601 putative L7Ae-like ri 20.9 2.9E+02 0.0063 22.8 5.6 43 258-312 11-53 (82)
65 KOG4175 Tryptophan synthase al 20.9 1.2E+02 0.0026 30.0 3.9 100 249-368 101-202 (268)
66 PLN02746 hydroxymethylglutaryl 20.8 3.4E+02 0.0073 28.2 7.3 71 6-97 161-239 (347)
67 KOG3147 6-phosphogluconolacton 20.7 1.7E+02 0.0036 29.5 4.8 78 39-118 51-156 (252)
68 PF13727 CoA_binding_3: CoA-bi 20.3 1.4E+02 0.0031 25.6 3.9 44 259-313 129-172 (175)
69 PF01261 AP_endonuc_2: Xylose 20.1 1.2E+02 0.0025 26.7 3.4 98 210-316 26-132 (213)
No 1
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=4e-173 Score=1326.59 Aligned_cols=396 Identities=40% Similarity=0.703 Sum_probs=378.5
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEEEEEee-----cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccc
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP 75 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH-----vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~p 75 (400)
|+||||+||++||+|||++||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||||++|
T Consensus 158 p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~p 237 (573)
T PLN00197 158 PGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLP 237 (573)
T ss_pred CCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceecccccccc
Confidence 899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHhhchhhcCceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHHH
Q 015809 76 VLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEA 155 (400)
Q Consensus 76 vl~GRTp~q~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~~ 155 (400)
||+||||||||+|||+|||++|++||+++|+||+|||||||||||||||+++|+|+||||||||||||||+++||++|++
T Consensus 238 vl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~ 317 (573)
T PLN00197 238 VLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEA 317 (573)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEeccee
Q 015809 156 NGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIH 235 (400)
Q Consensus 156 ~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GIH 235 (400)
+|||+||++||||||+||+.|++|+||++++|+|+|+||||||+|||++||+||||||++|+.+|++++|+|++||||||
T Consensus 318 ~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIH 397 (573)
T PLN00197 318 AGKPEWGSTGPTDAGHYNNWPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIH 397 (573)
T ss_pred hCCHhhcCCCCCCccccCCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccce
Confidence 99999999999999999999999999997778999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeecc
Q 015809 236 SWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQ 315 (400)
Q Consensus 236 Wwy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GE 315 (400)
|||+|+||||||||||||+++||||+||++|||||+|+|+||||||+|.+||++++|+||+||+||+++|+++||+|+||
T Consensus 398 WwY~t~SHAAELTAGyYNt~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~PE~Lv~QV~~aA~~~Gv~vaGE 477 (573)
T PLN00197 398 WHYGTRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPLAGE 477 (573)
T ss_pred eecCCCCchHhhccccccCCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCcEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHhccC-------CCCccceEEeecCcccCCCCChhhHHHHHHHhccCCCCCCCCCCcchh-hhhh
Q 015809 316 NSSVTGAPGGFEQMKKNLFG-------ENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEV-TESV 387 (400)
Q Consensus 316 NAl~~~d~~~~~qi~~~~~~-------~~~~~~fTylRm~~~l~~~~n~~~F~~FV~~m~~~~~~~~~~~~~~~~-~~~~ 387 (400)
|||+|||.++|+||+++... ...+++||||||++.||+++||++|++|||+||++... +++|+++++ .+.+
T Consensus 478 NAL~r~D~~~~~qI~~~~~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~-~~~~~~~~~~~~~~ 556 (573)
T PLN00197 478 NALPRYDDYAHEQILQASSLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKDS-HRCREQVEREAEHF 556 (573)
T ss_pred ccccccChhHHHHHHHhcccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCCC-Cccchhcchhcccc
Confidence 99999999999999999642 12589999999999999999999999999999998775 899988666 4444
Q ss_pred cccCCCccee
Q 015809 388 HTNANTNIQV 397 (400)
Q Consensus 388 ~~~~~~~~~~ 397 (400)
..+....+|.
T Consensus 557 ~~~~~~~~~e 566 (573)
T PLN00197 557 VHVTRPLVQE 566 (573)
T ss_pred eecchhhHHH
Confidence 4444444443
No 2
>PLN02803 beta-amylase
Probab=100.00 E-value=4.6e-172 Score=1315.47 Aligned_cols=397 Identities=39% Similarity=0.717 Sum_probs=376.4
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEEEEEee-----cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccc
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP 75 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH-----vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~p 75 (400)
|++|||+||++||+|||++||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||||++|
T Consensus 138 p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~p 217 (548)
T PLN02803 138 PMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLP 217 (548)
T ss_pred CCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccch
Confidence 899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHhhchhhcCceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHHH
Q 015809 76 VLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEA 155 (400)
Q Consensus 76 vl~GRTp~q~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~~ 155 (400)
||+||||||||+|||+|||++|++||++||+||+|||||||||||||||+++|+|+||||||||||||||+++||++|++
T Consensus 218 vl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~ 297 (548)
T PLN02803 218 VLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEA 297 (548)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEeccee
Q 015809 156 NGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIH 235 (400)
Q Consensus 156 ~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GIH 235 (400)
+|||+||++||||||+||++|++|+||+++ |+|+|+||||||+|||++||+||||||++|+.+|++++|+|++||||||
T Consensus 298 ~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~-G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIH 376 (548)
T PLN02803 298 IGKKDWGRGGPHDAGEYKQFPEETGFFRRD-GTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIH 376 (548)
T ss_pred hCCHhhccCCCCCcCcCCCCCCCCCCCCCC-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceee
Confidence 999999999999999999999999999977 8999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeecc
Q 015809 236 SWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQ 315 (400)
Q Consensus 236 Wwy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GE 315 (400)
|||+|+|||||||||||||++||||+||++|||||+|+|+||||||+|.|||++++|+||+||+||+++|+++||+|+||
T Consensus 377 WwY~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~l~FTClEM~D~eqp~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGE 456 (548)
T PLN02803 377 WHYRTRSHAAELTAGYYNTRNHDGYLPIARMFSKHGVVLNFTCMEMRDGEQPEHANCSPEGLVRQVKMATRTAGTELAGE 456 (548)
T ss_pred eecCCCCchhhhccccccCCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHhccCCC--CccceEEeecCcccCCCCChhhHHHHHHHhccCCCCCCCCCCcchh-hhh----hc
Q 015809 316 NSSVTGAPGGFEQMKKNLFGEN--VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEV-TES----VH 388 (400)
Q Consensus 316 NAl~~~d~~~~~qi~~~~~~~~--~~~~fTylRm~~~l~~~~n~~~F~~FV~~m~~~~~~~~~~~~~~~~-~~~----~~ 388 (400)
|||++||.++|+||+++...+. ++.+||||||++.||+++||++|++|||+|+++... ++++..++. .+. +.
T Consensus 457 NAL~~~d~~~~~qi~~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~-~~~~~~~~~~~~~~~~~~~ 535 (548)
T PLN02803 457 NALERYDSAAFAQVVATSRSDSGNGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGRN-RRLPECDTEGSDLYVGFIK 535 (548)
T ss_pred ccccccCHHHHHHHHHhhcccccCceeeeEEecCChHHcChhhHHHHHHHHHHhcCcccc-CccchhhccCccchhhhhc
Confidence 9999999999999999975433 699999999999999999999999999999998775 666554333 222 22
Q ss_pred ccCCCcceeec
Q 015809 389 TNANTNIQVQA 399 (400)
Q Consensus 389 ~~~~~~~~~~~ 399 (400)
.+....+|+++
T Consensus 536 ~~~~~~~~~~a 546 (548)
T PLN02803 536 DKDAEKTTEAA 546 (548)
T ss_pred ccchhhhhhhh
Confidence 44444555544
No 3
>PLN02801 beta-amylase
Probab=100.00 E-value=2.2e-169 Score=1290.68 Aligned_cols=389 Identities=34% Similarity=0.664 Sum_probs=368.8
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEEEEEee-----cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccc
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP 75 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH-----vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~p 75 (400)
|+||||+||++||+|||++||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||||++|
T Consensus 68 P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~p 147 (517)
T PLN02801 68 PKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLP 147 (517)
T ss_pred CCccCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCccc
Confidence 899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHhhchhhcC-ceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHH
Q 015809 76 VLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAE 154 (400)
Q Consensus 76 vl~GRTp~q~Y~dfm~SF~~~F~~~~~~-~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~ 154 (400)
||+||||||||+|||+|||++|++||++ +|+||+|||||||||||||||+++| |+||||||||||||||+++||++|+
T Consensus 148 vl~GRTplq~Y~Dfm~SFr~~F~~~l~~~~I~eI~VGlGP~GELRYPSYp~~~g-W~fpGiGEFQCYDky~~~~l~~aA~ 226 (517)
T PLN02801 148 LFHGRTAVEMYSDYMKSFRENMADFLEAGVIIDIEVGLGPAGELRYPSYPETQG-WVFPGIGEFQCYDKYLKADFKEAAT 226 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEEcccccccccCCCCcCCCC-CCCCCcceeeeccHHHHHHHHHHHH
Confidence 9999999999999999999999999985 9999999999999999999999998 9999999999999999999999999
Q ss_pred HhCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEecce
Q 015809 155 ANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLI 234 (400)
Q Consensus 155 ~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GI 234 (400)
++|||+||+ |||||+||++|++|+||+++ |+|+|+||||||+|||++||+||||||++|+++|++++|+|+||||||
T Consensus 227 ~~G~p~Wg~--P~dag~Yn~~P~~t~FF~~~-G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGI 303 (517)
T PLN02801 227 EAGHPEWEL--PDDAGEYNDTPEDTGFFKSN-GTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGI 303 (517)
T ss_pred hcCCcccCC--CCCCCcccCCCCCCCCCCCC-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecee
Confidence 999999995 99999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeec
Q 015809 235 HSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSG 314 (400)
Q Consensus 235 HWwy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~G 314 (400)
||||+|+||||||||||||+++||||.|||+|||||+|+|+||||||+|++||++++|+||+||+||+++|+++||+|+|
T Consensus 304 HWwY~t~SHaAElTAGyYN~~~rDGY~pIa~m~~rh~~~l~FTClEM~D~eq~~~~~s~PE~Lv~QV~~aa~~~Gv~vaG 383 (517)
T PLN02801 304 HWWYKHHSHAAELTAGYYNLKGRDGYRPIARMLSRHYGILNFTCLEMRDTEQPAEALSAPQELVQQVLSGAWREGIEVAG 383 (517)
T ss_pred eeecCCCCchHhhccccccCCCccchHHHHHHHHHcCCeEEEeecccccCCCCcccCCCHHHHHHHHHHHHHHcCCcEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcchHHHHHHhccCCC---------CccceEEeecCcccCCCCChhhHHHHHHHhccCCCCCCCCCCcchhhh
Q 015809 315 QNSSVTGAPGGFEQMKKNLFGEN---------VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTE 385 (400)
Q Consensus 315 ENAl~~~d~~~~~qi~~~~~~~~---------~~~~fTylRm~~~l~~~~n~~~F~~FV~~m~~~~~~~~~~~~~~~~~~ 385 (400)
||||+|||.++|+||++++..++ ++++||||||++.||+++||++|++|||+||++...-.|-.+..+...
T Consensus 384 ENAL~~~D~~~y~qi~~~a~~~~~~~~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~ 463 (517)
T PLN02801 384 ENALSRYDRRGYNQILLNARPNGVNKDGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQDYCPDPAKYGHEIV 463 (517)
T ss_pred eccccccCHHHHHHHHHHhhhccCCcccccccceeeEEEecCchHhcCcchHHHHHHHHHHhccccccCCChhhcCCCCC
Confidence 99999999999999999975432 489999999999999999999999999999986544333223344455
Q ss_pred hhcccCCC
Q 015809 386 SVHTNANT 393 (400)
Q Consensus 386 ~~~~~~~~ 393 (400)
++.+|+..
T Consensus 464 p~~~~~~~ 471 (517)
T PLN02801 464 PLERSNPE 471 (517)
T ss_pred ccccCCCc
Confidence 56665543
No 4
>PLN02161 beta-amylase
Probab=100.00 E-value=2.1e-169 Score=1290.58 Aligned_cols=370 Identities=39% Similarity=0.746 Sum_probs=362.2
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEEEEEee-----cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccc
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP 75 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH-----vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~p 75 (400)
|+||||+||++||+|||++||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||||++|
T Consensus 148 p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~p 227 (531)
T PLN02161 148 PLEFKWSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLP 227 (531)
T ss_pred CCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccch
Confidence 899999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHhhchhhcCceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHHH
Q 015809 76 VLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEA 155 (400)
Q Consensus 76 vl~GRTp~q~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~~ 155 (400)
||+||||||||+|||+|||++|++||+++|+||+|||||||||||||||+++|+|+||||||||||||||+++||++|++
T Consensus 228 vl~GRTplq~Y~Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~ 307 (531)
T PLN02161 228 LFGGRTAVQCYEDFMLSFSTKFEPYIGNVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQ 307 (531)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred hCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCC------CCceEEE
Q 015809 156 NGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGE------TGVSIYG 229 (400)
Q Consensus 156 ~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~------~~v~l~a 229 (400)
+|||+||++||||||.||+.|++|+||++++|+|+|+||||||+|||++||+||||||++|+.+|++ ++|+|++
T Consensus 308 ~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~a 387 (531)
T PLN02161 308 EGKPQWGSRDPPNTGCYNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVA 387 (531)
T ss_pred hCCHhhccCCCCCCcccCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEE
Confidence 9999999999999999999999999999877899999999999999999999999999999999975 6899999
Q ss_pred EecceeecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcC
Q 015809 230 KIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHG 309 (400)
Q Consensus 230 Kv~GIHWwy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~G 309 (400)
|||||||||+|+||||||||||||+++||||.|||+|||||+|+|+||||||+|.|||+++.|+||+||+||+++|+++|
T Consensus 388 Kv~GIHWwY~t~SHaAElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~~~~~s~Pe~Lv~QV~~aa~~~G 467 (531)
T PLN02161 388 KIGGIYWWYKTSSHPAELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETPEKYLCSPEGLRQQIHDVSKKWT 467 (531)
T ss_pred EeccccccCCCCCchhhhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCCccccCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeccccccCCCcchHHHHHHhccCCC--CccceEEeecCcccCCCCChhhHHHHHHHhccC
Q 015809 310 VEVSGQNSSVTGAPGGFEQMKKNLFGEN--VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQL 370 (400)
Q Consensus 310 v~~~GENAl~~~d~~~~~qi~~~~~~~~--~~~~fTylRm~~~l~~~~n~~~F~~FV~~m~~~ 370 (400)
|+|+|||||++||..+|+||++++...+ ++.+||||||++.||+++||++|++|||+||++
T Consensus 468 v~~aGENAL~~~D~~~~~qi~~n~~~~~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~ 530 (531)
T PLN02161 468 IHVTGRNTSERFDEMGLRQIRENCVQPNGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSAD 530 (531)
T ss_pred CceeecccccccChhHHHHHHHHhcCCCCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCC
Confidence 9999999999999999999999975433 499999999999999999999999999999985
No 5
>PLN02905 beta-amylase
Probab=100.00 E-value=2.1e-166 Score=1287.53 Aligned_cols=366 Identities=38% Similarity=0.714 Sum_probs=357.2
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEEEEEee-----cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccc
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP 75 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH-----vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~p 75 (400)
|+||||+||++||+|||++||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||+|++|
T Consensus 317 P~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~p 396 (702)
T PLN02905 317 PQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKER 396 (702)
T ss_pred CCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeeccccc
Confidence 899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHhhchhhcC-ceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHH
Q 015809 76 VLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAE 154 (400)
Q Consensus 76 vl~GRTp~q~Y~dfm~SF~~~F~~~~~~-~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~ 154 (400)
||+||||||||+|||+|||++|++||++ +|+||+|||||||||||||||++.| |+||||||||||||||+++||++|+
T Consensus 397 vl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaGELRYPSYp~s~G-W~fPGiGEFQCYDKymla~Lk~aA~ 475 (702)
T PLN02905 397 ILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGLGPCGELRYPSCPVKHG-WRYPGIGEFQCYDQYLLKSLRKAAE 475 (702)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCccccCCCCcCcCC-CCCCCcceeeeccHHHHHHHHHHHH
Confidence 9999999999999999999999999987 9999999999999999999999988 9999999999999999999999999
Q ss_pred HhCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEecce
Q 015809 155 ANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLI 234 (400)
Q Consensus 155 ~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GI 234 (400)
++|||+||+ ||||||+||++|++|+||+++ |+|+|+||||||+|||++||+||||||++|+.+|++ ++|+||||||
T Consensus 476 a~GhpeWG~-gP~dAG~YN~~P~~TgFF~~~-Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g--~~LaaKVaGI 551 (702)
T PLN02905 476 ARGHLFWAR-GPDNTGSYNSQPHETGFFCDG-GDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIAAKLPGV 551 (702)
T ss_pred HhCcHhhcc-CCCCCCccCCCCCCCCCCCCC-CcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccc
Confidence 999999998 899999999999999999976 799999999999999999999999999999999986 7999999999
Q ss_pred eecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCC---CCCCChHHHHHHHHHHHHhcCCe
Q 015809 235 HSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPR---ESFSSPESLLAQIRTACNKHGVE 311 (400)
Q Consensus 235 HWwy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~---~~~s~Pe~Lv~qv~~aa~~~Gv~ 311 (400)
||||+|+||||||||||||+++||||+||++|||||+|+|+||||||+|.+||+ +++|+||+||+||+++|+++||+
T Consensus 552 HWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~ 631 (702)
T PLN02905 552 HWWYKTASHAAELTAGFYNPCNRDGYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTP 631 (702)
T ss_pred cccCCCCCchHhhccccccCCCcccHHHHHHHHHHcCCeEEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999986 88999999999999999999999
Q ss_pred eeccccccCCCcchHHHHHHhccCCC-----CccceEEeecCcccCCCCChhhHHHHHHHhccCC
Q 015809 312 VSGQNSSVTGAPGGFEQMKKNLFGEN-----VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLE 371 (400)
Q Consensus 312 ~~GENAl~~~d~~~~~qi~~~~~~~~-----~~~~fTylRm~~~l~~~~n~~~F~~FV~~m~~~~ 371 (400)
|+|||||++||.++|+||+++++.++ .+.+||||||++.||+++||++|++|||+||++.
T Consensus 632 vaGENAL~r~D~~ay~qI~~na~~~~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~~~~ 696 (702)
T PLN02905 632 VASENSLPCHDRVGYNKILENAKPLNDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKRMHGEA 696 (702)
T ss_pred eeccccccccCHHHHHHHHHHhhcccCCccCceeeeEEecCchhhcCcchHHHHHHHHHHhcccc
Confidence 99999999999999999999976542 4899999999999999999999999999999863
No 6
>PLN02705 beta-amylase
Probab=100.00 E-value=1.6e-164 Score=1270.44 Aligned_cols=367 Identities=36% Similarity=0.649 Sum_probs=357.5
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEEEEEee-----cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccc
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP 75 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH-----vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~p 75 (400)
|++|||+||++||+|||++||||||||||| |||+|+||||+||++++++|||||||||+|+||+||||||+|++|
T Consensus 299 P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~p 378 (681)
T PLN02705 299 PQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKER 378 (681)
T ss_pred CCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCccc
Confidence 899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHhhchhhcC-ceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHH
Q 015809 76 VLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAE 154 (400)
Q Consensus 76 vl~GRTp~q~Y~dfm~SF~~~F~~~~~~-~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~ 154 (400)
||+||||||||+|||+|||++|++||++ +|+||+|||||||||||||||++.| |+||||||||||||||+++||++|+
T Consensus 379 vl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GELRYPSYp~~~g-W~fPGiGEFQCYDkymla~Lk~aA~ 457 (681)
T PLN02705 379 VLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPERMG-WIYPGIGEFQCYDKYSQQNLRKAAK 457 (681)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCccccCCCCcccCC-CCCCCcceeeeccHHHHHHHHHHHH
Confidence 9999999999999999999999999987 9999999999999999999999988 9999999999999999999999999
Q ss_pred HhCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEecce
Q 015809 155 ANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLI 234 (400)
Q Consensus 155 ~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GI 234 (400)
++|||+||+ ||||||.||++|++|+||+++ |+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||
T Consensus 458 a~GhpeWG~-gP~dAg~YN~~P~~tgFF~~~-G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~--~~LsaKVaGI 533 (681)
T PLN02705 458 SRGHSFWAR-GPDNAGQYNSRPHETGFFCER-GDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEE--TKIIVKIPAV 533 (681)
T ss_pred HhCcHhhcc-CCCCccccCCCCCCCCCCCCC-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccc
Confidence 999999998 799999999999999999988 779999999999999999999999999999999986 8999999999
Q ss_pred eecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCC-CCCCCCChHHHHHHHHHHHHhcCCeee
Q 015809 235 HSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQ-PRESFSSPESLLAQIRTACNKHGVEVS 313 (400)
Q Consensus 235 HWwy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~-p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~ 313 (400)
||||+|+||||||||||||+++||||+||++|||||+|+|+|||+||+|.++ |.+++|+||+||+||+++|+++||+|+
T Consensus 534 HWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTC~eMe~~d~~~~~a~s~PE~LV~QV~~aA~~~Gv~va 613 (681)
T PLN02705 534 YWWYKTASHAAELTAGYYNPTNQDGYSPVFETLKKHSVTVKFVCSGLQMSPNENDEALADPEGLSWQVLNSAWDRGLTVA 613 (681)
T ss_pred cccCCCCCchhhhccccccCCCcccHHHHHHHHHHcCceEEEEeccccccCCCCCccCCCHHHHHHHHHHHHHHcCCcee
Confidence 9999999999999999999999999999999999999999999999999986 889999999999999999999999999
Q ss_pred ccccccCCCcchHHHHHHhccCCC-----CccceEEeecCcccCCCCChhhHHHHHHHhccCCC
Q 015809 314 GQNSSVTGAPGGFEQMKKNLFGEN-----VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLEL 372 (400)
Q Consensus 314 GENAl~~~d~~~~~qi~~~~~~~~-----~~~~fTylRm~~~l~~~~n~~~F~~FV~~m~~~~~ 372 (400)
|||||++||.++|+||+++++.++ .|++||||||++.||+++||++|++|||+||++..
T Consensus 614 GENAL~~~D~~ay~qI~~na~~~~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~ 677 (681)
T PLN02705 614 GENAITCYDREGCMRLIEIAKPRNHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCMHGDIR 677 (681)
T ss_pred ecccccccCHHHHHHHHHHhcccCCCcccceeeeEEecCchHhcCcccHHHHHHHHHHhccccc
Confidence 999999999999999999976543 48999999999999999999999999999998653
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=5.8e-150 Score=1128.45 Aligned_cols=342 Identities=49% Similarity=0.909 Sum_probs=290.1
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEEEEEee-----cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccc
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP 75 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH-----vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~p 75 (400)
|+||||++|++||+|||++||||||||||| |||+|+||||+||++++++| ||+||||+|+||+|||| |
T Consensus 47 p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p 119 (402)
T PF01373_consen 47 PQQYDWSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------P 119 (402)
T ss_dssp TTB---HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------C
T ss_pred CCccCcHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------c
Confidence 899999999999999999999999999999 89999999999999999999 99999999999999999 9
Q ss_pred ccCCCChhHHHHHHHHHHHHhhchhhcCceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHH-
Q 015809 76 VLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAE- 154 (400)
Q Consensus 76 vl~GRTp~q~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~- 154 (400)
|++||| ||+|+|||+|||++|++|+ ++|+||+|||||||||||||||+++| |+||||||||||||||+++||++|+
T Consensus 120 ~~~grt-~~~Y~dfm~sF~~~f~~~~-~~I~~I~vglGP~GELRYPSy~~~~g-w~~pgiGeFQcYDk~~~~~l~~~a~~ 196 (402)
T PF01373_consen 120 VLDGRT-LQCYSDFMRSFRDNFSDYL-STITEIQVGLGPAGELRYPSYPESDG-WRFPGIGEFQCYDKYMLASLRAAAEA 196 (402)
T ss_dssp TBTTBC-HHHHHHHHHHHHHHCHHHH-TGEEEEEE--SGGGBSS-S-S-GGGT-B-TTS-----B-SHHHHHHHHHHHHH
T ss_pred ccCCch-HHHHHHHHHHHHHHHHHHH-hhheEEEeccCCcceeccCCCCCCCC-CcCCCcceeeeccHHHHHHHHHHHHH
Confidence 999999 9999999999999999999 99999999999999999999999999 9999999999999999999999999
Q ss_pred -----HhCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCC-CceEE
Q 015809 155 -----ANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIY 228 (400)
Q Consensus 155 -----~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~-~v~l~ 228 (400)
+.+||+||++||||+ ||++|++|+||+++ |+|+|+||||||+|||++|++||||||++|+.+|+++ +|+|+
T Consensus 197 kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~fF~~~-G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~ 273 (402)
T PF01373_consen 197 KYGSLGAGNPAWGLSGPHDA--YNSPPEDTGFFRDN-GSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLS 273 (402)
T ss_dssp HTTCCTCTCTTHTS-SSSGG--TT-SGGGSTTTSTT-CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEE
T ss_pred hhhhhccccccCCCCCCChh--hcCCCCCCCCcccC-CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEE
Confidence 678999999999999 99999999999987 7899999999999999999999999999999999999 99999
Q ss_pred EEecceeecCC--CCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHH
Q 015809 229 GKIPLIHSWYK--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACN 306 (400)
Q Consensus 229 aKv~GIHWwy~--t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~ 306 (400)
+|||||||||+ |+|||||||||||| |+||++|||||+|+|+||||||+|.+++++ .|+||+||+||+++|+
T Consensus 274 aKv~GIHWwy~~pt~sHaAElTAGyyN------Y~~Ia~mf~kh~~~l~fTClEM~d~~~~p~-~s~Pe~Lv~QV~~aa~ 346 (402)
T PF01373_consen 274 AKVPGIHWWYNSPTRSHAAELTAGYYN------YSPIARMFKKHGVTLNFTCLEMRDSEEQPE-YSSPEGLVRQVLNAAW 346 (402)
T ss_dssp EEEE---TTTTSTSTTTHHHHHHT-S-------SHHHHHHHHTTT-EEEES-TT--GGSGSCG-GG-HHHHHHHHHHHHH
T ss_pred EEecceeeccCCCCCCChHHHhccccC------HHHHHHHHHHcCcEEEEEeccccCCCCCCC-CCCHHHHHHHHHHHHH
Confidence 99999999999 88999999999999 999999999999999999999999954333 5799999999999999
Q ss_pred hcCCeeeccccccCCCcchHHHHHHhccCCCCccceEEeecCcccCCCCChhhHHHH
Q 015809 307 KHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKF 363 (400)
Q Consensus 307 ~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~~fTylRm~~~l~~~~n~~~F~~F 363 (400)
++||+|+|||||++||+++|+||+++++. .++.+||||||++.||+++||++|++|
T Consensus 347 ~~Gv~~~GENAL~~~d~~~~~qi~~~~~~-~~~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 347 RHGVPVAGENALPRYDNGAYNQILENAKG-YNYSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp HTT-EEEEE-SS---SHHHHHHHHHHHTH-TTTTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred HcCCCEeeeeCccccCHHHHHHHHHHhhc-cCCCCeEEEccChHhcCcccHHhccCC
Confidence 99999999999999999999999999753 367889999999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=98.50 E-value=1.8e-06 Score=86.66 Aligned_cols=187 Identities=16% Similarity=0.215 Sum_probs=117.1
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCC
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGK 80 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GR 80 (400)
|++|||+.++++++++++.||||...+.. -..|.|+. ++.|++...|+.|.+. +.+.-.-.-
T Consensus 41 eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-------~~~P~Wl~---~~~Pe~~~~~~~g~~~----~~g~~~~~~---- 102 (374)
T PF02449_consen 41 EGQYDFSWLDRVLDLAAKHGIKVILGTPT-------AAPPAWLY---DKYPEILPVDADGRRR----GFGSRQHYC---- 102 (374)
T ss_dssp TTB---HHHHHHHHHHHCTT-EEEEEECT-------TTS-HHHH---CCSGCCC-B-TTTSBE----ECCCSTT-H----
T ss_pred CCeeecHHHHHHHHHHHhccCeEEEEecc-------cccccchh---hhcccccccCCCCCcC----ccCCccccc----
Confidence 68999999999999999999997654442 34799996 4689999999999763 222111110
Q ss_pred ChhHHHHHHHHHHHHhhchhhcC--ceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHHH---
Q 015809 81 TPIQVYQEFCESFKSSFKPFMGT--TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEA--- 155 (400)
Q Consensus 81 Tp~q~Y~dfm~SF~~~F~~~~~~--~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~~--- 155 (400)
.--..|+++++.|..++..-+++ .|..++|.=.|.+. .||++.+++.|++..++
T Consensus 103 ~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~---------------------~~~~~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 103 PNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH---------------------RCYSPACQAAFRQWLKEKYG 161 (374)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT---------------------S--SHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC---------------------cCCChHHHHHHHHHHHHHhC
Confidence 11357888888888888766565 78888875444333 69999999999999986
Q ss_pred ---hCCCCcCCCC-CCCCCCCCC--CCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEE
Q 015809 156 ---NGNPLWGLRG-PHDAPSYDE--SPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYG 229 (400)
Q Consensus 156 ---~G~~~WG~~g-P~dag~yn~--~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~a 229 (400)
+.|.+||+.- .+...++++ +|..+.... +...-.+|...-+..+.+.-..+....+++-. +..|..
T Consensus 162 ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~------~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p--~~~vt~ 233 (374)
T PF02449_consen 162 TIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPE------NPAQWLDWYRFQSDRVAEFFRWQADIIREYDP--DHPVTT 233 (374)
T ss_dssp SHHHHHHHHTTTGGG---SSGGG---S-S-SS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHST--T-EEE-
T ss_pred CHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CceEEe
Confidence 6688999862 233467773 555544111 22233466666678888888888888887753 577777
Q ss_pred Eecce
Q 015809 230 KIPLI 234 (400)
Q Consensus 230 Kv~GI 234 (400)
++-+.
T Consensus 234 n~~~~ 238 (374)
T PF02449_consen 234 NFMGS 238 (374)
T ss_dssp EE-TT
T ss_pred Ccccc
Confidence 87776
No 9
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=94.00 E-value=0.11 Score=52.07 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=49.1
Q ss_pred CCcccchhH---HHHHHHHHHcCCcEEEEEEee---cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcc
Q 015809 1 MGKYNWSGY---LAVAEMVEKIGLKLHVSLCFH---ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDL 74 (400)
Q Consensus 1 p~~ydWs~Y---~~l~~mvr~~GLKl~~vmSFH---vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~ 74 (400)
|++|||++- .+++++|+++||+ ||+.+= -+...+=-||.|+.+. +++...+. +++|
T Consensus 54 ~g~~df~g~~dl~~f~~~a~~~gl~--vilrpGpyi~aE~~~gG~P~Wl~~~----~~~~~R~~----~~~~-------- 115 (319)
T PF01301_consen 54 EGQFDFTGNRDLDRFLDLAQENGLY--VILRPGPYICAEWDNGGLPAWLLRK----PDIRLRTN----DPPF-------- 115 (319)
T ss_dssp TTB---SGGG-HHHHHHHHHHTT-E--EEEEEES---TTBGGGG--GGGGGS----TTS-SSSS-----HHH--------
T ss_pred CCcccccchhhHHHHHHHHHHcCcE--EEecccceecccccchhhhhhhhcc----cccccccc----chhH--------
Confidence 689999985 5889999999999 577765 2333333499999764 23333211 1122
Q ss_pred cccCCCChhHHHHHHHHHHHHhhchhhcC---ceeEEEe
Q 015809 75 PVLDGKTPIQVYQEFCESFKSSFKPFMGT---TITGISM 110 (400)
Q Consensus 75 pvl~GRTp~q~Y~dfm~SF~~~F~~~~~~---~I~eI~V 110 (400)
++.-+.|++.+....++++-+ .|.-|||
T Consensus 116 --------~~~~~~~~~~~~~~~~~~~~~~GGpII~vQv 146 (319)
T PF01301_consen 116 --------LEAVERWYRALAKIIKPLQYTNGGPIIMVQV 146 (319)
T ss_dssp --------HHHHHHHHHHHHHHHGGGBGGGTSSEEEEEE
T ss_pred --------HHHHHHHHHHHHHHHHhhhhcCCCceehhhh
Confidence 456677777777777776532 7888887
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=93.58 E-value=3.9 Score=39.30 Aligned_cols=184 Identities=19% Similarity=0.306 Sum_probs=105.8
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCC
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGK 80 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GR 80 (400)
|++|||+.-+++++.+++.|+|++.-..+. ++ -.|.|+.+.. .+
T Consensus 10 ~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W-~~----~~P~W~~~~~-----------------------~~-------- 53 (254)
T smart00633 10 RGQFNFSGADAIVNFAKENGIKVRGHTLVW-HS----QTPDWVFNLS-----------------------KE-------- 53 (254)
T ss_pred CCccChHHHHHHHHHHHHCCCEEEEEEEee-cc----cCCHhhhcCC-----------------------HH--------
Confidence 689999999999999999999997533332 12 3689985321 11
Q ss_pred ChhHHHHHHHHHHHHhhchhhcC--ceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHHHhCC
Q 015809 81 TPIQVYQEFCESFKSSFKPFMGT--TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGN 158 (400)
Q Consensus 81 Tp~q~Y~dfm~SF~~~F~~~~~~--~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~~~G~ 158 (400)
.-.+...+|++.-..+|++.+.. |+.|..-.-|+ | +| . ..| ++..| +.|+...|+.+.+..
T Consensus 54 ~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~~~~~~~-~-~~-----~--~~w-~~~~G-----~~~i~~af~~ar~~~-- 116 (254)
T smart00633 54 TLLARLENHIKTVVGRYKGKIYAWDVVNEALHDNGS-G-LR-----R--SVW-YQILG-----EDYIEKAFRYAREAD-- 116 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCcceEEEEeeecccCCCc-c-cc-----c--chH-HHhcC-----hHHHHHHHHHHHHhC--
Confidence 12477888888888888766443 55553321111 1 11 1 113 23344 468888888665531
Q ss_pred CCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEecceeecC
Q 015809 159 PLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWY 238 (400)
Q Consensus 159 ~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GIHWwy 238 (400)
|+ +..|-++ |+..-+. .+.++++...+.+... +++|-+ =|++++.
T Consensus 117 -----------------P~-a~l~~Nd---y~~~~~~-----------~k~~~~~~~v~~l~~~-g~~iDg--iGlQ~H~ 161 (254)
T smart00633 117 -----------------PD-AKLFYND---YNTEEPN-----------AKRQAIYELVKKLKAK-GVPIDG--IGLQSHL 161 (254)
T ss_pred -----------------CC-CEEEEec---cCCcCcc-----------HHHHHHHHHHHHHHHC-CCccce--eeeeeee
Confidence 22 3333331 2221110 2445677777766643 444322 1444333
Q ss_pred CCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCC
Q 015809 239 KTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDE 284 (400)
Q Consensus 239 ~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~ 284 (400)
.... .+-+....+++.|++.|..+.+|=++++..
T Consensus 162 ~~~~------------~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~ 195 (254)
T smart00633 162 SLGS------------PNIAEIRAALDRFASLGLEIQITELDISGY 195 (254)
T ss_pred cCCC------------CCHHHHHHHHHHHHHcCCceEEEEeecCCC
Confidence 2111 112447788888899999999998888754
No 11
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=83.32 E-value=16 Score=37.90 Aligned_cols=185 Identities=20% Similarity=0.250 Sum_probs=109.9
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEEEEEee--cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccC
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH--ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLD 78 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH--vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~ 78 (400)
++.|+|..-+++++.+|+.||+++ +| |= .-..|.|+.. |+ +.
T Consensus 76 ~G~f~Fe~AD~ia~FAr~h~m~lh----GHtLvW---~~q~P~W~~~-----------~e------------------~~ 119 (345)
T COG3693 76 RGRFNFEAADAIANFARKHNMPLH----GHTLVW---HSQVPDWLFG-----------DE------------------LS 119 (345)
T ss_pred CCccCccchHHHHHHHHHcCCeec----cceeee---cccCCchhhc-----------cc------------------cC
Confidence 468999999999999999999764 56 10 0146888632 22 11
Q ss_pred CCChhHHHHHHHHHHHHhhchhhcC--ceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHHHh
Q 015809 79 GKTPIQVYQEFCESFKSSFKPFMGT--TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEAN 156 (400)
Q Consensus 79 GRTp~q~Y~dfm~SF~~~F~~~~~~--~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~~~ 156 (400)
+.--++++++.+..--.+|++-+.+ ||-|+- --.| ||.++- |..-|.| +.|+.-+|+.|.++
T Consensus 120 ~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~v-dd~g-------~~R~s~--w~~~~~g-----pd~I~~aF~~Area- 183 (345)
T COG3693 120 KEALAKMVEEHIKTVVGRYKGSVASWDVVNEAV-DDQG-------SLRRSA--WYDGGTG-----PDYIKLAFHIAREA- 183 (345)
T ss_pred hHHHHHHHHHHHHHHHHhccCceeEEEeccccc-CCCc-------hhhhhh--hhccCCc-----cHHHHHHHHHHHhh-
Confidence 2223689999999999999986665 666663 2222 565554 6655666 48999999998873
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEecceee
Q 015809 157 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236 (400)
Q Consensus 157 G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GIHW 236 (400)
.|+ . -+|.++ |. -..--.|-+-|+.+-+..-. . +++|-||
T Consensus 184 --------dP~----------A-kL~~ND---Y~-----------ie~~~~kr~~~~nlI~~Lke-k----G~pIDgi-- 223 (345)
T COG3693 184 --------DPD----------A-KLVIND---YS-----------IEGNPAKRNYVLNLIEELKE-K----GAPIDGI-- 223 (345)
T ss_pred --------CCC----------c-eEEeec---cc-----------ccCChHHHHHHHHHHHHHHH-C----CCCccce--
Confidence 233 2 333331 10 00001133334444433332 2 3445555
Q ss_pred cCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCC
Q 015809 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEH 285 (400)
Q Consensus 237 wy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e 285 (400)
+..|| ++-+ ++.-.++-.. ..-|.+-|+.+..|=|+|++..
T Consensus 224 --G~QsH---~~~~--~~~~~~~~~a-~~~~~k~Gl~i~VTELD~~~~~ 264 (345)
T COG3693 224 --GIQSH---FSGD--GPSIEKMRAA-LLKFSKLGLPIYVTELDMSDYT 264 (345)
T ss_pred --eeeee---ecCC--CCCHHHHHHH-HHHHhhcCCCceEEEeeeeccC
Confidence 34588 3322 2333333333 3444556999999999999976
No 12
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=81.83 E-value=18 Score=36.24 Aligned_cols=193 Identities=19% Similarity=0.302 Sum_probs=107.4
Q ss_pred CCcccchhHHHHHHHHHHcCCcEEE-EEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCC
Q 015809 1 MGKYNWSGYLAVAEMVEKIGLKLHV-SLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDG 79 (400)
Q Consensus 1 p~~ydWs~Y~~l~~mvr~~GLKl~~-vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~G 79 (400)
+++|||+.-+++.+-+++.|++++- .|..|. -.|.||.+....+|+ + +|.+
T Consensus 53 ~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~------~~P~w~~~~~~~~~~-----~-----~~~~------------ 104 (320)
T PF00331_consen 53 PGRFNFESADAILDWARENGIKVRGHTLVWHS------QTPDWVFNLANGSPD-----E-----KEEL------------ 104 (320)
T ss_dssp TTBEE-HHHHHHHHHHHHTT-EEEEEEEEESS------SS-HHHHTSTTSSBH-----H-----HHHH------------
T ss_pred CCccCccchhHHHHHHHhcCcceeeeeEEEcc------cccceeeeccCCCcc-----c-----HHHH------------
Confidence 5789999999999999999999982 233353 469999876111110 0 1111
Q ss_pred CChhHHHHHHHHHHHHhhch--hhcC--ceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHHH
Q 015809 80 KTPIQVYQEFCESFKSSFKP--FMGT--TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEA 155 (400)
Q Consensus 80 RTp~q~Y~dfm~SF~~~F~~--~~~~--~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~~ 155 (400)
.+.-.++++.-..+|.+ -+.. ||-|+--.-|=.+.||- .. | |.-+| +.|....|+.|-+.
T Consensus 105 ---~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~------~~-~-~~~lG-----~~yi~~aF~~A~~~ 168 (320)
T PF00331_consen 105 ---RARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRD------SP-W-YDALG-----PDYIADAFRAAREA 168 (320)
T ss_dssp ---HHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCT------SH-H-HHHHT-----TCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccC------Ch-h-hhccc-----HhHHHHHHHHHHHh
Confidence 24555555555556653 2332 55555322221123332 10 1 22233 67888888887775
Q ss_pred hCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEeccee
Q 015809 156 NGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIH 235 (400)
Q Consensus 156 ~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GIH 235 (400)
. |+-.-|..+ |+.... .+-++++.+.+.+=.. +|+|-+===--|
T Consensus 169 ~-------------------P~a~L~~ND----y~~~~~------------~k~~~~~~lv~~l~~~-gvpIdgIG~Q~H 212 (320)
T PF00331_consen 169 D-------------------PNAKLFYND----YNIESP------------AKRDAYLNLVKDLKAR-GVPIDGIGLQSH 212 (320)
T ss_dssp H-------------------TTSEEEEEE----SSTTST------------HHHHHHHHHHHHHHHT-THCS-EEEEEEE
T ss_pred C-------------------CCcEEEecc----ccccch------------HHHHHHHHHHHHHHhC-CCccceechhhc
Confidence 3 222334433 343322 4677778777766532 555433111113
Q ss_pred ecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCC
Q 015809 236 SWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPR 288 (400)
Q Consensus 236 Wwy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~ 288 (400)
+....+ .+.....++.|+..|+.+++|=|++++...+.
T Consensus 213 ~~~~~~---------------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~ 250 (320)
T PF00331_consen 213 FDAGYP---------------PEQIWNALDRFASLGLPIHITELDVRDDDNPP 250 (320)
T ss_dssp EETTSS---------------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTS
T ss_pred cCCCCC---------------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCc
Confidence 333222 34577788888889999999999999887643
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=79.91 E-value=7.7 Score=40.62 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhHH
Q 015809 6 WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQV 85 (400)
Q Consensus 6 Ws~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q~ 85 (400)
+..|+++++.+++.||+..|.|. | .-||.|+.+ +.|-.|+| -++.
T Consensus 93 ~~~y~~~i~~l~~~gi~pivtL~-H------fd~P~~l~~------------~gGw~~~~----------------~~~~ 137 (427)
T TIGR03356 93 LDFYDRLVDELLEAGIEPFVTLY-H------WDLPQALED------------RGGWLNRD----------------TAEW 137 (427)
T ss_pred HHHHHHHHHHHHHcCCeeEEeec-c------CCccHHHHh------------cCCCCChH----------------HHHH
Confidence 78999999999999999988886 5 448999744 22433322 2588
Q ss_pred HHHHHHHHHHhhchhhcC--ceeEEEe
Q 015809 86 YQEFCESFKSSFKPFMGT--TITGISM 110 (400)
Q Consensus 86 Y~dfm~SF~~~F~~~~~~--~I~eI~V 110 (400)
|.+|.+-..++|.+..+- ||.|..+
T Consensus 138 f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 138 FAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred HHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 999999999999987554 7778765
No 14
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=76.36 E-value=5.5 Score=37.18 Aligned_cols=69 Identities=14% Similarity=0.332 Sum_probs=44.1
Q ss_pred cchhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhH
Q 015809 5 NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQ 84 (400)
Q Consensus 5 dWs~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q 84 (400)
-|..++++++.+++.||++ |+.+|.. |.|. .+..+.. ...+..+
T Consensus 60 ~~~~ld~~v~~a~~~gi~v--ild~h~~-------~~w~------------~~~~~~~---------------~~~~~~~ 103 (281)
T PF00150_consen 60 YLARLDRIVDAAQAYGIYV--ILDLHNA-------PGWA------------NGGDGYG---------------NNDTAQA 103 (281)
T ss_dssp HHHHHHHHHHHHHHTT-EE--EEEEEES-------TTCS------------SSTSTTT---------------THHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeE--EEEeccC-------cccc------------ccccccc---------------cchhhHH
Confidence 4677899999999999997 7899953 7771 0011100 0112457
Q ss_pred HHHHHHHHHHHhhchhhcCceeEEEec
Q 015809 85 VYQEFCESFKSSFKPFMGTTITGISMG 111 (400)
Q Consensus 85 ~Y~dfm~SF~~~F~~~~~~~I~eI~VG 111 (400)
.|.+|.+.++.+|++. +.|.-++|.
T Consensus 104 ~~~~~~~~la~~y~~~--~~v~~~el~ 128 (281)
T PF00150_consen 104 WFKSFWRALAKRYKDN--PPVVGWELW 128 (281)
T ss_dssp HHHHHHHHHHHHHTTT--TTTEEEESS
T ss_pred HHHhhhhhhccccCCC--CcEEEEEec
Confidence 7888999999998753 345555543
No 15
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=72.29 E-value=34 Score=38.45 Aligned_cols=167 Identities=22% Similarity=0.286 Sum_probs=95.5
Q ss_pred CcccchhHHHH-HHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCc-------cCcccccccCc
Q 015809 2 GKYNWSGYLAV-AEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQ-------FKGCLSLAVDD 73 (400)
Q Consensus 2 ~~ydWs~Y~~l-~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~r-------n~E~LSl~~D~ 73 (400)
++|||+--++. ++|+++.||++... . | .+---|+|..+. .|+|..+|..|.+ +.++.|
T Consensus 62 G~fdf~~~D~~~l~~a~~~Gl~vil~--t--~--P~g~~P~Wl~~~---~PeiL~~~~~~~~~~~g~r~~~~~~~----- 127 (673)
T COG1874 62 GKFDFTWLDEIFLERAYKAGLYVILR--T--G--PTGAPPAWLAKK---YPEILAVDENGRVRSDGARENICPVS----- 127 (673)
T ss_pred cccCcccchHHHHHHHHhcCceEEEe--c--C--CCCCCchHHhcC---ChhheEecCCCcccCCCccccccccc-----
Confidence 57899977777 89999999986543 2 1 123359998654 5999999998654 333333
Q ss_pred ccccCCCChhHHHHHHHHHHHHhhchh-hcC--ceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHH
Q 015809 74 LPVLDGKTPIQVYQEFCESFKSSFKPF-MGT--TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQ 150 (400)
Q Consensus 74 ~pvl~GRTp~q~Y~dfm~SF~~~F~~~-~~~--~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk 150 (400)
| .|+.+-+--.+...+. .++ -|.-.+|.- -|++| + ||-++-.+.|+
T Consensus 128 --------~--~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn------eY~~~----~-----------~~~~~~~~~f~ 176 (673)
T COG1874 128 --------P--VYREYLDRILQQIRERLYGNGPAVITWQNDN------EYGGH----P-----------CYCDYCQAAFR 176 (673)
T ss_pred --------H--HHHHHHHHHHHHHHHHHhccCCceeEEEccC------ccCCc----c-----------ccccccHHHHH
Confidence 1 4655555433334443 343 455666666 44444 2 88888888888
Q ss_pred HHHHH------hCCCCcCCCC-CCCCCCCCC--CCC-CCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhc
Q 015809 151 QHAEA------NGNPLWGLRG-PHDAPSYDE--SPN-SNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTF 220 (400)
Q Consensus 151 ~~A~~------~G~~~WG~~g-P~dag~yn~--~P~-~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F 220 (400)
...++ ..|..|+..= =|+...|.+ +|. ..+ ..--+=...|=+|. +.+.+.--++....++..|
T Consensus 177 ~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e---~~~~~~~ld~~~f~----~e~~~~~~~~~~~~~~~~~ 249 (673)
T COG1874 177 LWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGE---LPLPGLYLDYRRFE----SEQILEFVREEGEAIKAYF 249 (673)
T ss_pred HHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccc---cCCccchhhHhhhh----hhhhHHHHHHHHHHHHHhC
Confidence 66654 4577777642 233444542 222 111 11001113344443 3345555666666777777
No 16
>PLN03059 beta-galactosidase; Provisional
Probab=71.58 E-value=25 Score=40.45 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=69.9
Q ss_pred CCcccchhHHHH---HHHHHHcCCcEEEEEEeec-CCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccc
Q 015809 1 MGKYNWSGYLAV---AEMVEKIGLKLHVSLCFHA-LKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPV 76 (400)
Q Consensus 1 p~~ydWs~Y~~l---~~mvr~~GLKl~~vmSFHv-gD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pv 76 (400)
|++|||+|=++| +++|++.||.+++=..=.+ +.--.=-||.|+.+ +|+|.+.
T Consensus 89 ~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~----~~~i~~R-------------------- 144 (840)
T PLN03059 89 PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY----VPGIEFR-------------------- 144 (840)
T ss_pred CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc----CCCcccc--------------------
Confidence 689999997765 6788999998765332220 00011129999965 3454433
Q ss_pred cCCCChhHHHHHHHHHHHHhhchhhc---------CceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHH
Q 015809 77 LDGKTPIQVYQEFCESFKSSFKPFMG---------TTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLN 147 (400)
Q Consensus 77 l~GRTp~q~Y~dfm~SF~~~F~~~~~---------~~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~ 147 (400)
|--+.|.+-|+.|-++..+.|+ --|.-||| |=-|=||....| --|+--++
T Consensus 145 ----s~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQI------ENEYGs~~~~~~-----------~~d~~Yl~ 203 (840)
T PLN03059 145 ----TDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQI------ENEYGPVEWEIG-----------APGKAYTK 203 (840)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEe------cccccceecccC-----------cchHHHHH
Confidence 2224566666666666655552 25667776 555766632211 22555567
Q ss_pred HHHHHHHHhC--CCCcCCCCC
Q 015809 148 LLQQHAEANG--NPLWGLRGP 166 (400)
Q Consensus 148 ~lk~~A~~~G--~~~WG~~gP 166 (400)
-|++.|++.| -|..-..||
T Consensus 204 ~l~~~~~~~Gi~VPl~t~dg~ 224 (840)
T PLN03059 204 WAADMAVKLGTGVPWVMCKQE 224 (840)
T ss_pred HHHHHHHHcCCCcceEECCCC
Confidence 7888888755 344444444
No 17
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=64.46 E-value=12 Score=40.00 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=57.2
Q ss_pred CcccchhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCC
Q 015809 2 GKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKT 81 (400)
Q Consensus 2 ~~ydWs~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRT 81 (400)
++-.+..|++|++.+++.|++..|-|. | --||.|+.+.- -|=.|+ .
T Consensus 105 N~~gl~~Y~~lid~l~~~GI~P~vTL~-H------~dlP~~L~~~y-----------GGW~n~----------------~ 150 (477)
T PRK15014 105 NEEGLKFYDDMFDELLKYNIEPVITLS-H------FEMPLHLVQQY-----------GSWTNR----------------K 150 (477)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEee-C------CCCCHHHHHhc-----------CCCCCh----------------H
Confidence 445688999999999999999888875 5 45899995420 122222 2
Q ss_pred hhHHHHHHHHHHHHhhchhhcC--ceeEEEec
Q 015809 82 PIQVYQEFCESFKSSFKPFMGT--TITGISMG 111 (400)
Q Consensus 82 p~q~Y~dfm~SF~~~F~~~~~~--~I~eI~VG 111 (400)
-++.+.+|.+---++|.+..+- ||.|+.|-
T Consensus 151 ~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 151 VVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred HHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 2689999999999999998776 89998753
No 18
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=63.37 E-value=12 Score=39.88 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=57.2
Q ss_pred CcccchhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCC
Q 015809 2 GKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKT 81 (400)
Q Consensus 2 ~~ydWs~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRT 81 (400)
++-.+..|++|++-+++.|++..|.|. | -.||.|+.+. --|=.| |.
T Consensus 107 n~~~~~~Y~~~i~~l~~~gi~p~VtL~-H------~~~P~~l~~~-----------~GGW~~----------------~~ 152 (474)
T PRK09852 107 NQQGIAFYRSVFEECKKYGIEPLVTLC-H------FDVPMHLVTE-----------YGSWRN----------------RK 152 (474)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEee-C------CCCCHHHHHh-----------cCCCCC----------------HH
Confidence 455688999999999999999999986 4 4589997441 012111 23
Q ss_pred hhHHHHHHHHHHHHhhchhhcC--ceeEEEe
Q 015809 82 PIQVYQEFCESFKSSFKPFMGT--TITGISM 110 (400)
Q Consensus 82 p~q~Y~dfm~SF~~~F~~~~~~--~I~eI~V 110 (400)
-++.|.+|-+-..++|.+..+- ||.|..|
T Consensus 153 ~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 153 MVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred HHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 3689999999999999998776 8888764
No 19
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=62.73 E-value=28 Score=31.00 Aligned_cols=73 Identities=14% Similarity=0.052 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCC--ccCcccccccCcccccCCCChhHHH
Q 015809 9 YLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQ--QFKGCLSLAVDDLPVLDGKTPIQVY 86 (400)
Q Consensus 9 Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~--rn~E~LSl~~D~~pvl~GRTp~q~Y 86 (400)
..++++.+++.|+++.+-++|+.. .+ ..++.||=+..|++|+ +..+....+.-.+++- + -|
T Consensus 46 lge~v~a~h~~Girv~ay~~~~~d--------~~---~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n---s---~Y 108 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFSWD--------ED---AAERHPEWFVRDADGRPMRGERFGYPGWYTCCLN---S---PY 108 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeeecC--------hH---HHHhCCceeeECCCCCCcCCCCcCCCCceecCCC---c---cH
Confidence 478999999999999999999832 22 2367888899999998 3344444333333321 2 47
Q ss_pred HHHHHHHHHhhc
Q 015809 87 QEFCESFKSSFK 98 (400)
Q Consensus 87 ~dfm~SF~~~F~ 98 (400)
.||+..-.++.-
T Consensus 109 ~e~~~~~i~Ei~ 120 (132)
T PF14871_consen 109 REFLLEQIREIL 120 (132)
T ss_pred HHHHHHHHHHHH
Confidence 777766555443
No 20
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=61.88 E-value=14 Score=39.47 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhHH
Q 015809 6 WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQV 85 (400)
Q Consensus 6 Ws~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q~ 85 (400)
...|++|++-+++.|++-.|-| +| --||.|+.+. --|=.|+ .-++.
T Consensus 107 l~~Y~~lid~L~~~GI~P~VTL-~H------~dlP~~L~~~-----------yGGW~n~----------------~~i~~ 152 (476)
T PRK09589 107 LQFYDDLFDECLKQGIEPVVTL-SH------FEMPYHLVTE-----------YGGWRNR----------------KLIDF 152 (476)
T ss_pred HHHHHHHHHHHHHcCCEEEEEe-cC------CCCCHHHHHh-----------cCCcCCh----------------HHHHH
Confidence 5689999999999999988888 46 5699999442 0232222 23678
Q ss_pred HHHHHHHHHHhhchhhcC--ceeEEEe
Q 015809 86 YQEFCESFKSSFKPFMGT--TITGISM 110 (400)
Q Consensus 86 Y~dfm~SF~~~F~~~~~~--~I~eI~V 110 (400)
|.+|-+---++|.+..+. ||.|..+
T Consensus 153 F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 153 FVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred HHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 888888889999998877 8889764
No 21
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=59.98 E-value=7.5 Score=40.76 Aligned_cols=71 Identities=18% Similarity=0.313 Sum_probs=52.2
Q ss_pred cchhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhH
Q 015809 5 NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQ 84 (400)
Q Consensus 5 dWs~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q 84 (400)
.+..|++|++.++++|++..|.|. | --||.|+.+.| |-.|+ .-++
T Consensus 97 ~~~~Y~~~i~~l~~~gi~P~vtL~-H------~~~P~~l~~~g------------gw~~~----------------~~~~ 141 (455)
T PF00232_consen 97 GLDFYRDLIDELLENGIEPIVTLY-H------FDLPLWLEDYG------------GWLNR----------------ETVD 141 (455)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-S------S--BHHHHHHT------------GGGST----------------HHHH
T ss_pred HhhhhHHHHHHHHhhccceeeeee-e------cccccceeecc------------cccCH----------------HHHH
Confidence 378999999999999999888884 5 45899997643 22222 2268
Q ss_pred HHHHHHHHHHHhhchhhcC--ceeEEEe
Q 015809 85 VYQEFCESFKSSFKPFMGT--TITGISM 110 (400)
Q Consensus 85 ~Y~dfm~SF~~~F~~~~~~--~I~eI~V 110 (400)
.+.+|.+--.++|.+..+- ||.|..+
T Consensus 142 ~F~~Ya~~~~~~~gd~V~~w~T~NEp~~ 169 (455)
T PF00232_consen 142 WFARYAEFVFERFGDRVKYWITFNEPNV 169 (455)
T ss_dssp HHHHHHHHHHHHHTTTBSEEEEEETHHH
T ss_pred HHHHHHHHHHHHhCCCcceEEeccccce
Confidence 8999999999999998665 7777654
No 22
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=59.87 E-value=13 Score=39.36 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=55.7
Q ss_pred cchhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhH
Q 015809 5 NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQ 84 (400)
Q Consensus 5 dWs~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q 84 (400)
-+..|++|++-+++.|++-.|.|- | .-||.|+.+ +.|=.|+| -++
T Consensus 92 gl~~Y~~lid~l~~~GI~P~VTL~-H------~dlP~~L~~------------~GGW~n~~----------------~v~ 136 (469)
T PRK13511 92 GVEYYHRLFAECHKRHVEPFVTLH-H------FDTPEALHS------------NGDWLNRE----------------NID 136 (469)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEec-C------CCCcHHHHH------------cCCCCCHH----------------HHH
Confidence 467899999999999999888874 6 669999954 33433333 268
Q ss_pred HHHHHHHHHHHhhchhhcC--ceeEEEec
Q 015809 85 VYQEFCESFKSSFKPFMGT--TITGISMG 111 (400)
Q Consensus 85 ~Y~dfm~SF~~~F~~~~~~--~I~eI~VG 111 (400)
.|.+|-+---++|.+ .+. ||.|..+-
T Consensus 137 ~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~ 164 (469)
T PRK13511 137 HFVRYAEFCFEEFPE-VKYWTTFNEIGPI 164 (469)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEccchhhh
Confidence 899999999999999 887 88887654
No 23
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=55.31 E-value=52 Score=35.52 Aligned_cols=105 Identities=18% Similarity=0.278 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhHHH
Q 015809 7 SGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVY 86 (400)
Q Consensus 7 s~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q~Y 86 (400)
..|++||+-+++.|++..|-|+ | ..||.|+.+.. .|=.| |.-|+.|
T Consensus 100 ~fY~~l~del~~~gIep~vTL~-H------fd~P~~L~~~y-----------gGW~n----------------R~~i~~F 145 (460)
T COG2723 100 RFYDRLFDELKARGIEPFVTLY-H------FDLPLWLQKPY-----------GGWEN----------------RETVDAF 145 (460)
T ss_pred HHHHHHHHHHHHcCCEEEEEec-c------cCCcHHHhhcc-----------CCccC----------------HHHHHHH
Confidence 4699999999999999888875 6 78999997764 23222 3447899
Q ss_pred HHHHHHHHHhhchhhcC--ceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHHH
Q 015809 87 QEFCESFKSSFKPFMGT--TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEA 155 (400)
Q Consensus 87 ~dfm~SF~~~F~~~~~~--~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~~ 155 (400)
..|-+---.+|.|..+- |.-|+.|=+. +-|. .| --.|++..++-.=+-+--.+-++|.+
T Consensus 146 ~~ya~~vf~~f~dkVk~W~TFNE~n~~~~----~~y~-----~~-~~~p~~~~~~~~~qa~hh~~lA~A~a 206 (460)
T COG2723 146 ARYAATVFERFGDKVKYWFTFNEPNVVVE----LGYL-----YG-GHPPGIVDPKAAYQVAHHMLLAHALA 206 (460)
T ss_pred HHHHHHHHHHhcCcceEEEEecchhhhhc----cccc-----cc-ccCCCccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886 8888877554 2222 22 24567777765555555556666654
No 24
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=46.57 E-value=14 Score=35.09 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=17.6
Q ss_pred ccchhHHHHHHHHHHcCCcEEEE
Q 015809 4 YNWSGYLAVAEMVEKIGLKLHVS 26 (400)
Q Consensus 4 ydWs~Y~~l~~mvr~~GLKl~~v 26 (400)
|+|+.|+.|++.+|+.|+++.+.
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipviA~ 108 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVIAL 108 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EEEE
T ss_pred CchHHHHHHHHHHHHCCCCEEEe
Confidence 57999999999999999988764
No 25
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=44.14 E-value=79 Score=33.74 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhHH
Q 015809 6 WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQV 85 (400)
Q Consensus 6 Ws~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q~ 85 (400)
...|++|++-++++|++-.|.|. | .-||.|+.+ +-|=.|+ .-++.
T Consensus 92 l~~Y~~lid~l~~~GI~P~VTL~-H------~dlP~~L~~------------~GGW~n~----------------~~v~~ 136 (467)
T TIGR01233 92 VEFYHKLFAECHKRHVEPFVTLH-H------FDTPEALHS------------NGDFLNR----------------ENIEH 136 (467)
T ss_pred HHHHHHHHHHHHHcCCEEEEecc-C------CCCcHHHHH------------cCCCCCH----------------HHHHH
Confidence 46899999999999999777774 5 569999954 2333332 33678
Q ss_pred HHHHHHHHHHhhchhhcC--ceeEEEe
Q 015809 86 YQEFCESFKSSFKPFMGT--TITGISM 110 (400)
Q Consensus 86 Y~dfm~SF~~~F~~~~~~--~I~eI~V 110 (400)
|.+|-+---++|.+ .+- ||.|..+
T Consensus 137 F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 137 FIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred HHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 88888888888988 676 8888764
No 26
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=43.01 E-value=39 Score=32.60 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=37.2
Q ss_pred hHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccc
Q 015809 260 YAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 318 (400)
Q Consensus 260 Y~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GENAl 318 (400)
...+++.|-+.|+...++|+.-.--...---..--++++..+...+++.||..+|||.-
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GE 181 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDESFLGRELDRELIEELPELNKKYGVDPCGEGGE 181 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GGGTT-B--HHHHHHHHHHHHHH---TT-TTTT
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChHHCCCCccHHHHHHHHHHHhhcCccccCCCee
Confidence 66777778888999999998754322100112234689999999999999999999974
No 27
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=41.65 E-value=6 Score=39.74 Aligned_cols=31 Identities=32% Similarity=0.700 Sum_probs=27.5
Q ss_pred cceEEeecCcccCCCC-ChhhHHHHHHHhccC
Q 015809 340 DLFTYQRMGAYFFSPE-HFPSFTKFVRNLNQL 370 (400)
Q Consensus 340 ~~fTylRm~~~l~~~~-n~~~F~~FV~~m~~~ 370 (400)
.=||++|||..++.|. +|..+..|++.|...
T Consensus 96 ~PfTiqRlcEl~~~P~~~y~~~~k~~~alek~ 127 (288)
T PF09184_consen 96 PPFTIQRLCELLLDPRKHYKTLDKFLRALEKV 127 (288)
T ss_pred CChhHHHHHHHHhChhhccccHHHHHHHHhee
Confidence 5699999999999995 699999999998654
No 28
>PLN02814 beta-glucosidase
Probab=41.08 E-value=41 Score=36.35 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhHHH
Q 015809 7 SGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVY 86 (400)
Q Consensus 7 s~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q~Y 86 (400)
..|++|++-++++|++-.|-|. | --||.|+.+. --|=.| |.-++.|
T Consensus 117 ~fY~~lId~l~~~GI~P~VTL~-H------~dlP~~L~~~-----------yGGW~n----------------~~~i~~F 162 (504)
T PLN02814 117 LFYKNLIKELRSHGIEPHVTLY-H------YDLPQSLEDE-----------YGGWIN----------------RKIIEDF 162 (504)
T ss_pred HHHHHHHHHHHHcCCceEEEec-C------CCCCHHHHHh-----------cCCcCC----------------hhHHHHH
Confidence 6799999999999999888885 6 5699999542 023222 2336889
Q ss_pred HHHHHHHHHhhchhhcC--ceeEEEe
Q 015809 87 QEFCESFKSSFKPFMGT--TITGISM 110 (400)
Q Consensus 87 ~dfm~SF~~~F~~~~~~--~I~eI~V 110 (400)
.+|-+---++|.+..+- ||.|..+
T Consensus 163 ~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 163 TAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred HHHHHHHHHHhCCcCCEEEeccccch
Confidence 99988889999998876 7778764
No 29
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=40.88 E-value=56 Score=31.12 Aligned_cols=59 Identities=7% Similarity=0.161 Sum_probs=43.2
Q ss_pred hHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccc
Q 015809 260 YAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 318 (400)
Q Consensus 260 Y~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GENAl 318 (400)
-..|++.+.+.|.....+|+.-.--...---+.--++++..+....++.||.++|||.-
T Consensus 124 ~~el~~~~~~~G~~~~i~~v~~~~l~~~~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE 182 (218)
T TIGR03679 124 QEEYLRELVERGFRFIIVSVSAYGLDESWLGREIDEKYIEKLKALNKRYGINPAGEGGE 182 (218)
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHHCCCccCHHHHHHHHHHHhhcCccccCCCce
Confidence 56799999999999999998643211100012233578888999999999999999974
No 30
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=39.86 E-value=45 Score=31.98 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=48.7
Q ss_pred HHHHHcCCcEEEEEEee----cCCCCCCCCChhhhhhcccCCCeeee--------------cCCCCccCcccccccCccc
Q 015809 14 EMVEKIGLKLHVSLCFH----ALKQPKIPLPDWVSQIGESQSSIFYT--------------DQSGQQFKGCLSLAVDDLP 75 (400)
Q Consensus 14 ~mvr~~GLKl~~vmSFH----vgD~~~IpLP~WV~~~g~~~pdi~yt--------------D~~G~rn~E~LSl~~D~~p 75 (400)
.-|.+.+++ +|+-+| -.+-.-.-||.||.++- +||++.- |..=.|+-|-
T Consensus 73 ~rI~~~~~~--iivDtH~~IkTP~GylpgLP~~Vl~~l--~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es--------- 139 (189)
T COG2019 73 KRIAEMALE--IIVDTHATIKTPAGYLPGLPSWVLEEL--NPDVIVLLEADPEEILERRLRDSRRDRDVES--------- 139 (189)
T ss_pred HHHHHhhhc--eEEeccceecCCCccCCCCcHHHHHhc--CCCEEEEEeCCHHHHHHHHhccccccccccc---------
Confidence 344445555 899999 33445566999999863 4555442 3222222221
Q ss_pred ccCCCChhHHHHHHHHHHHHhhchhhcCceeEE
Q 015809 76 VLDGKTPIQVYQEFCESFKSSFKPFMGTTITGI 108 (400)
Q Consensus 76 vl~GRTp~q~Y~dfm~SF~~~F~~~~~~~I~eI 108 (400)
---|+.-.++-|.++-+.+-+.++++.=|
T Consensus 140 ----~e~i~eHqe~nR~aA~a~A~~~gatVkIV 168 (189)
T COG2019 140 ----VEEIREHQEMNRAAAMAYAILLGATVKIV 168 (189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 12367777888888888888888866555
No 31
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=39.05 E-value=1.3e+02 Score=32.35 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhHH
Q 015809 6 WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQV 85 (400)
Q Consensus 6 Ws~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q~ 85 (400)
...|++|++-+++.|++-.|-|- | --||.|+.+. --|=.|+ .-++.
T Consensus 113 l~~Y~~lId~L~~~GI~P~VTL~-H------~dlP~~L~~~-----------~GGW~n~----------------~~v~~ 158 (478)
T PRK09593 113 LQFYEDIFKECHKYGIEPLVTIT-H------FDCPMHLIEE-----------YGGWRNR----------------KMVGF 158 (478)
T ss_pred HHHHHHHHHHHHHcCCEEEEEec-c------cCCCHHHHhh-----------cCCCCCh----------------HHHHH
Confidence 46899999999999999888874 6 5699998442 1232222 22678
Q ss_pred HHHHHHHHHHhhchhhcC--ceeEEEec
Q 015809 86 YQEFCESFKSSFKPFMGT--TITGISMG 111 (400)
Q Consensus 86 Y~dfm~SF~~~F~~~~~~--~I~eI~VG 111 (400)
|.+|-+---++|.+..+- ||.|..+-
T Consensus 159 F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 186 (478)
T PRK09593 159 YERLCRTLFTRYKGLVKYWLTFNEINMI 186 (478)
T ss_pred HHHHHHHHHHHhcCcCCEEEeecchhhh
Confidence 888888888899998776 88887753
No 32
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=37.94 E-value=77 Score=30.05 Aligned_cols=82 Identities=9% Similarity=0.057 Sum_probs=56.8
Q ss_pred HHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcchHHHHHHhccCCCCcc
Q 015809 261 AAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVD 340 (400)
Q Consensus 261 ~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~ 340 (400)
..+.+.++++|..+.+.+++..|-... ....|+..+++|+..++.-.|-|.=.+.. ...++..+|+..+ .-.
T Consensus 142 ~~~~~~l~~~Gy~~v~w~v~~~Dw~~~--~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~l----k~~ 213 (224)
T TIGR02884 142 ERTLAYTKELGYYTVFWSLAFKDWKVD--EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDL----KEQ 213 (224)
T ss_pred HHHHHHHHHcCCcEEeccccCcccCCC--CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHH----HHC
Confidence 347888999999999999988776532 12457888999987766544555543321 1346888888887 356
Q ss_pred ceEEeecCcc
Q 015809 341 LFTYQRMGAY 350 (400)
Q Consensus 341 ~fTylRm~~~ 350 (400)
||++.++.+.
T Consensus 214 Gy~fvtl~el 223 (224)
T TIGR02884 214 GYTFKSLDDL 223 (224)
T ss_pred CCEEEEhHHc
Confidence 6778777653
No 33
>PLN02998 beta-glucosidase
Probab=37.23 E-value=50 Score=35.60 Aligned_cols=71 Identities=17% Similarity=0.291 Sum_probs=54.0
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhHH
Q 015809 6 WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQV 85 (400)
Q Consensus 6 Ws~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q~ 85 (400)
...|++|++-+++.|++-.|.|. | --||.|+.+. --|=.| |.-++.
T Consensus 121 l~~Y~~lid~L~~~GIeP~VTL~-H------~dlP~~L~~~-----------yGGW~n----------------~~~v~~ 166 (497)
T PLN02998 121 LQYYNNLIDELITHGIQPHVTLH-H------FDLPQALEDE-----------YGGWLS----------------QEIVRD 166 (497)
T ss_pred HHHHHHHHHHHHHcCCceEEEec-C------CCCCHHHHHh-----------hCCcCC----------------chHHHH
Confidence 46899999999999999888884 6 5699999542 023222 233688
Q ss_pred HHHHHHHHHHhhchhhcC--ceeEEEe
Q 015809 86 YQEFCESFKSSFKPFMGT--TITGISM 110 (400)
Q Consensus 86 Y~dfm~SF~~~F~~~~~~--~I~eI~V 110 (400)
|.+|-+---++|.+..+- ||.|..+
T Consensus 167 F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 167 FTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred HHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 999988889999998776 7888774
No 34
>PLN02849 beta-glucosidase
Probab=36.82 E-value=56 Score=35.33 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCcccccCCCChhHH
Q 015809 6 WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQV 85 (400)
Q Consensus 6 Ws~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl~GRTp~q~ 85 (400)
...|++|++-++++|++-.|-|. | --||.|+.+. --|=.| |.-++.
T Consensus 118 l~fY~~lid~l~~~GI~P~VTL~-H------~dlP~~L~~~-----------yGGW~n----------------r~~v~~ 163 (503)
T PLN02849 118 LQFYKNFIQELVKHGIEPHVTLF-H------YDHPQYLEDD-----------YGGWIN----------------RRIIKD 163 (503)
T ss_pred HHHHHHHHHHHHHcCCeEEEeec-C------CCCcHHHHHh-----------cCCcCC----------------chHHHH
Confidence 46799999999999999888884 6 5699998552 023233 233688
Q ss_pred HHHHHHHHHHhhchhhcC--ceeEEEe
Q 015809 86 YQEFCESFKSSFKPFMGT--TITGISM 110 (400)
Q Consensus 86 Y~dfm~SF~~~F~~~~~~--~I~eI~V 110 (400)
|.+|-+---++|.+..+- ||.|..+
T Consensus 164 F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 164 FTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred HHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 999998889999998776 8888764
No 35
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=36.56 E-value=1.5e+02 Score=26.95 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=48.0
Q ss_pred EEecceeecCCCCCChh-hh---cccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCC---CCCCCCChHHHHHHH
Q 015809 229 GKIPLIHSWYKTRSHPS-EL---TAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQ---PRESFSSPESLLAQI 301 (400)
Q Consensus 229 aKv~GIHWwy~t~sHaA-El---TAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~---p~~~~s~Pe~Lv~qv 301 (400)
+++.|+||+|....... .. .-|+ .....-|.++++.|++. +...+++++.... |....-+-+.+++.|
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~vv~~hG~--~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 11 VTVGPFHWHVQDMGPTAGPLLLLLHGT--GASTHSWRDLMPPLARS---FRVVAPDLPGHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred eeECCEEEEEEecCCCCCCeEEEEcCC--CCCHHHHHHHHHHHhhC---cEEEeecCCCCCCCCCccccCCCHHHHHHHH
Confidence 37899999997654321 11 1132 23345588999999874 4555677775432 222134678888888
Q ss_pred HHHHHhcCC
Q 015809 302 RTACNKHGV 310 (400)
Q Consensus 302 ~~aa~~~Gv 310 (400)
.+.....++
T Consensus 86 ~~~i~~~~~ 94 (278)
T TIGR03056 86 SALCAAEGL 94 (278)
T ss_pred HHHHHHcCC
Confidence 888776653
No 36
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=34.60 E-value=1.3e+02 Score=29.39 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCcEEEEEEee-cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccccc-CCCChhHHH
Q 015809 9 YLAVAEMVEKIGLKLHVSLCFH-ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVL-DGKTPIQVY 86 (400)
Q Consensus 9 Y~~l~~mvr~~GLKl~~vmSFH-vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~pvl-~GRTp~q~Y 86 (400)
.+++.+.+++.|.| +|+|+| ...+ | +.|-+.. .-.++.++|+|-+-+- .-+++-+..
T Consensus 124 ~~~l~~~~~~~~~k--vI~S~H~f~~t---P-~~~~l~~---------------~~~~~~~~gaDivKia~~a~~~~D~~ 182 (253)
T PRK02412 124 VKEMVAFAHEHGVK--VVLSYHDFEKT---P-PKEEIVE---------------RLRKMESLGADIVKIAVMPQSEQDVL 182 (253)
T ss_pred HHHHHHHHHHcCCE--EEEeeCCCCCC---c-CHHHHHH---------------HHHHHHHhCCCEEEEEecCCCHHHHH
Confidence 44556666666655 788999 2222 1 2232110 1125667888877653 344543333
Q ss_pred HHHHHHHHHhhchhhcCceeEEEecccCCCcC
Q 015809 87 QEFCESFKSSFKPFMGTTITGISMGLGPDGEL 118 (400)
Q Consensus 87 ~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GEL 118 (400)
+ .+ .|..+++.- ...+.=|.++||+.|-+
T Consensus 183 ~-ll-~~~~~~~~~-~~~~P~i~~~MG~~G~~ 211 (253)
T PRK02412 183 T-LL-NATREMKEL-YADQPLITMSMGKLGRI 211 (253)
T ss_pred H-HH-HHHHHHHhc-CCCCCEEEEeCCCCchH
Confidence 3 33 333333331 12344578899998854
No 37
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.11 E-value=29 Score=36.69 Aligned_cols=32 Identities=19% Similarity=0.515 Sum_probs=25.5
Q ss_pred cchhHHHHHHHHHHcCCcEEEEEEeecCCCCCCCCC-hhhhhhcc
Q 015809 5 NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP-DWVSQIGE 48 (400)
Q Consensus 5 dWs~Y~~l~~mvr~~GLKl~~vmSFHvgD~~~IpLP-~WV~~~g~ 48 (400)
.|.-|.+||..+- |....+++.|| .|+|++.+
T Consensus 6 Sw~nYc~LF~~iL------------~s~~p~~l~LPn~WlwDiiD 38 (404)
T PF10255_consen 6 SWDNYCELFNYIL------------NSDGPVNLELPNQWLWDIID 38 (404)
T ss_pred HHHHHHHHHHHHh------------CCCCCcccCCCcHHHHHHHH
Confidence 4899999999986 43445888999 59999865
No 38
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=33.52 E-value=1.2e+02 Score=26.74 Aligned_cols=45 Identities=13% Similarity=0.342 Sum_probs=39.3
Q ss_pred CCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCee
Q 015809 257 RDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEV 312 (400)
Q Consensus 257 rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~ 312 (400)
.-|+..+.+.+++..+.|.|-+- .++|.+++..+...|++++|++
T Consensus 32 v~G~~~v~kaikkgkakLVilA~-----------D~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 32 KKGTNETTKAVERGIAKLVVIAE-----------DVDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred eEcHHHHHHHHHcCCccEEEEeC-----------CCChHHHHHHHHHHHHHcCCCE
Confidence 45799999999999999999863 3678889999999999999996
No 39
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=31.63 E-value=51 Score=35.33 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCcEEEEEEeecCCCCCC
Q 015809 9 YLAVAEMVEKIGLKLHVSLCFHALKQPKI 37 (400)
Q Consensus 9 Y~~l~~mvr~~GLKl~~vmSFHvgD~~~I 37 (400)
=+.|.+++++.||||.= .|||||-.|.-
T Consensus 195 ~~~lLd~ak~l~lnvvG-vsfHvGSgc~d 222 (448)
T KOG0622|consen 195 CRHLLDMAKELELNVVG-VSFHVGSGCTD 222 (448)
T ss_pred HHHHHHHHHHcCceEEE-EEEEecCCCCC
Confidence 36799999999999865 59999976653
No 40
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=31.43 E-value=27 Score=27.79 Aligned_cols=21 Identities=33% Similarity=0.817 Sum_probs=18.2
Q ss_pred CcccccchhhHHHhHHhHhhH
Q 015809 188 SWESPYGDFFLSWYSSQLISH 208 (400)
Q Consensus 188 ~~~s~YG~fFL~WYs~~L~~H 208 (400)
.|.|.+||-|++-|-+.|+..
T Consensus 2 kwltsfgra~iscyksllltq 22 (65)
T PF06336_consen 2 KWLTSFGRAFISCYKSLLLTQ 22 (65)
T ss_pred chHHHHhHHHHHHHHHHHHHH
Confidence 489999999999999887653
No 41
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=30.44 E-value=2.3e+02 Score=26.74 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=37.7
Q ss_pred cccccCccccc-CCCChhHHHHHHHHHHHHhhchhhcCceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHH
Q 015809 67 LSLAVDDLPVL-DGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 145 (400)
Q Consensus 67 LSl~~D~~pvl-~GRTp~q~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~ 145 (400)
-++++|-+-+- .-+++ +--.+.+ .|..++.... .+.=|.++||+.|.+-==.-|.-..-+.|..+|+-..-.+.-
T Consensus 140 ~~~gadivKla~~~~~~-~D~~~ll-~~~~~~~~~~--~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~ 215 (225)
T cd00502 140 AALGADIVKIAVMANSI-EDNLRLL-KFTRQVKNLY--DIPLIAINMGELGKLSRILSPVFGSPLTYASLPEPSAPGQLS 215 (225)
T ss_pred HHhCCCEEEEEecCCCH-HHHHHHH-HHHHHHHhcC--CCCEEEEEcCCCCchhhccccccCCcccccCCCCCCCCCCcC
Confidence 34567766653 23333 2222333 3344443321 455678999999964311111111125666665544444444
Q ss_pred HHHHHH
Q 015809 146 LNLLQQ 151 (400)
Q Consensus 146 l~~lk~ 151 (400)
++.+++
T Consensus 216 ~~~l~~ 221 (225)
T cd00502 216 VEELKQ 221 (225)
T ss_pred HHHHHH
Confidence 444443
No 42
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=30.17 E-value=98 Score=30.05 Aligned_cols=56 Identities=5% Similarity=0.071 Sum_probs=39.0
Q ss_pred HHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccc
Q 015809 262 AVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 318 (400)
Q Consensus 262 ~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GENAl 318 (400)
.+++|+ .+|.....+|+.-.--...-=-+.--++++..+....++.||.++|||.-
T Consensus 125 ~l~e~i-~~Gf~aiIv~v~~~gL~~~~LGr~id~~~~~~L~~l~~~~gid~~GEgGE 180 (222)
T TIGR00289 125 KLMYEV-AEKFEVIIVSVSAMGLDESWLGRRIDKECIDDLKRLNEKYGIHLAFEGGE 180 (222)
T ss_pred HHHHHH-HcCCeEEEEEEccCCCChHHcCCccCHHHHHHHHHHHhhcCccccCCCce
Confidence 456665 78999999998744211100112333578889999999999999999975
No 43
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=28.68 E-value=1.6e+02 Score=25.66 Aligned_cols=45 Identities=16% Similarity=0.406 Sum_probs=38.8
Q ss_pred CCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCee
Q 015809 257 RDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEV 312 (400)
Q Consensus 257 rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~ 312 (400)
.-|+..+.+.+++..+.|.+-+- .++|.+....+...|+..+|++
T Consensus 28 ~~G~~~v~kaikkgka~LVilA~-----------D~s~~~~~~~i~~lc~~~~Ip~ 72 (117)
T TIGR03677 28 KKGTNEVTKAVERGIAKLVVIAE-----------DVEPPEIVAHLPALCEEKGIPY 72 (117)
T ss_pred eEcHHHHHHHHHcCCccEEEEeC-----------CCCcHHHHHHHHHHHHHcCCCE
Confidence 45799999999999999998863 3667889999999999999985
No 44
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=27.67 E-value=40 Score=27.56 Aligned_cols=31 Identities=19% Similarity=0.561 Sum_probs=22.9
Q ss_pred CCCCCCCCCh-hhhhhc-------ccCCCeeeecCCCCc
Q 015809 32 LKQPKIPLPD-WVSQIG-------ESQSSIFYTDQSGQQ 62 (400)
Q Consensus 32 gD~~~IpLP~-WV~~~g-------~~~pdi~ytD~~G~r 62 (400)
++.+++|||. |-++.. ...-|++|....|++
T Consensus 1 ~~~~~~Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP~Gkk 39 (77)
T smart00391 1 GDPLRLPLPCGWRRETKQRKSGRSAGKFDVYYISPCGKK 39 (77)
T ss_pred CCcccCCCCCCcEEEEEEecCCCCCCcccEEEECCCCCe
Confidence 3567899887 977753 234689999999975
No 45
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=27.56 E-value=1.2e+02 Score=29.61 Aligned_cols=59 Identities=8% Similarity=0.157 Sum_probs=42.7
Q ss_pred hHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccc
Q 015809 260 YAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 318 (400)
Q Consensus 260 Y~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GENAl 318 (400)
...+++.|-.+|+....+|+.-..-...---..-=++++..+.+..++.||.++|||.-
T Consensus 123 ~~~ll~e~i~~G~~aiIv~v~a~gL~~~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGE 181 (223)
T TIGR00290 123 PEKLMEEFVEEKFEARIIAVAAEGLDESWLGRRIDRKMIDELKKLNEKYGIHPAGEGGE 181 (223)
T ss_pred HHHHHHHHHHcCCeEEEEEEecCCCChHHcCCcccHHHHHHHHHHHhccCCCccCCCce
Confidence 46788888899999999998754222100012223578888888889999999999975
No 46
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=27.30 E-value=56 Score=26.58 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=27.1
Q ss_pred eecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeecc
Q 015809 277 PGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQ 315 (400)
Q Consensus 277 TclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GE 315 (400)
+|||..-... + ..++.|-.++...+++.||.++=|
T Consensus 49 ~~~e~~v~~~-~---~~~~~lr~~L~~la~elgvDIavQ 83 (84)
T cd04871 49 ACVEFSVRGQ-P---ADLEALRAALLELASELNVDIAFQ 83 (84)
T ss_pred EEEEEEEeCC-C---CCHHHHHHHHHHHhcccCceEEEe
Confidence 4777765532 2 478999999999999999988643
No 47
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=27.22 E-value=37 Score=25.51 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=21.3
Q ss_pred CCChHHHHHHHHHHHHhcCCeeecc
Q 015809 291 FSSPESLLAQIRTACNKHGVEVSGQ 315 (400)
Q Consensus 291 ~s~Pe~Lv~qv~~aa~~~Gv~~~GE 315 (400)
.-.|++|..+|...|..+|-.++.|
T Consensus 9 lRlP~~l~~~lk~~A~~~gRS~NsE 33 (50)
T PF03869_consen 9 LRLPEELKEKLKERAEENGRSMNSE 33 (50)
T ss_dssp EECEHHHHHHHHHHHHHTTS-HHHH
T ss_pred eECCHHHHHHHHHHHHHhCCChHHH
Confidence 3469999999999999999988876
No 48
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=27.20 E-value=1.9e+02 Score=22.37 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=37.5
Q ss_pred HHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeec
Q 015809 262 AVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSG 314 (400)
Q Consensus 262 ~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~G 314 (400)
.+|.+|++.++.+++ +++.+.-- ...++.+...+....++.||.+-=
T Consensus 13 E~A~~l~~~g~~vtl--i~~~~~~~----~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 13 ELAEALAELGKEVTL--IERSDRLL----PGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHTTSEEEE--EESSSSSS----TTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhCcEEEE--Eeccchhh----hhcCHHHHHHHHHHHHHCCCEEEe
Confidence 468899999987755 88887654 356788999999999999998753
No 49
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=27.03 E-value=91 Score=30.79 Aligned_cols=25 Identities=4% Similarity=0.147 Sum_probs=21.7
Q ss_pred CchHHHHHHHhhCCcEEEEeecccC
Q 015809 258 DGYAAVAEMFAKNSCKMILPGMDLS 282 (400)
Q Consensus 258 dGY~~Ia~mf~r~~~~l~fTclEM~ 282 (400)
++...|+++|+++|+..+|=++...
T Consensus 28 ~nt~riL~lL~~~gikATFFv~g~~ 52 (265)
T TIGR03006 28 RNTDRILDLLDRHGVKATFFTLGWV 52 (265)
T ss_pred HhHHHHHHHHHHcCCcEEEEEeccc
Confidence 4689999999999999999997643
No 50
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=26.58 E-value=51 Score=25.87 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=18.2
Q ss_pred CCCChhHHHHHHHHHHHHhhchh
Q 015809 78 DGKTPIQVYQEFCESFKSSFKPF 100 (400)
Q Consensus 78 ~GRTp~q~Y~dfm~SF~~~F~~~ 100 (400)
++++.....++|.++||++|..-
T Consensus 37 ~~~~~~~~~~~f~~~fk~nf~~~ 59 (77)
T PF04854_consen 37 RDEEDSYLFRDFWRAFKQNFKQS 59 (77)
T ss_pred cCCccChHHHHHHHHHHHHHHHH
Confidence 34434679999999999999864
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=26.34 E-value=1.7e+02 Score=26.13 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=32.2
Q ss_pred HHHHHHhhCCcEEEEe---ecc-c----CCCCCCCCCCCChHHHHHHHHHHHHhcCCeeec
Q 015809 262 AVAEMFAKNSCKMILP---GMD-L----SDEHQPRESFSSPESLLAQIRTACNKHGVEVSG 314 (400)
Q Consensus 262 ~Ia~mf~r~~~~l~fT---clE-M----~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~G 314 (400)
.++++|++-+++...- |-- + +.. ++..+.-. ..|+.++.++|++.||++-.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~-~~~hp~L~-~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKV-GPRHPGLK-RDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCC-CcCCCCCC-cCHHHHHHHHHHHCCCEEEE
Confidence 5678888865543322 311 1 111 22333333 89999999999999999876
No 52
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=25.03 E-value=42 Score=28.89 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEee
Q 015809 9 YLAVAEMVEKIGLKLHVSLCFH 30 (400)
Q Consensus 9 Y~~l~~mvr~~GLKl~~vmSFH 30 (400)
.....+-+|++||||+|+-||=
T Consensus 61 ~~~al~~ar~~g~kiiP~Csf~ 82 (99)
T COG2388 61 VEKALEEAREAGLKIIPLCSFA 82 (99)
T ss_pred HHHHHHHHHHcCCeEcccchHH
Confidence 4567889999999999988853
No 53
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=24.84 E-value=1.9e+02 Score=27.41 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=29.2
Q ss_pred cccccccCccccc-CCCChhHHHHHHHHHHHHhhchhhcCceeEEEecccCCCcCC
Q 015809 65 GCLSLAVDDLPVL-DGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELR 119 (400)
Q Consensus 65 E~LSl~~D~~pvl-~GRTp~q~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GELR 119 (400)
+..++|+|-+-+- .-+++ +-....+ +|..++... ..+.=|.++||+.|-+-
T Consensus 143 ~~~~~gaDivKia~~a~~~-~D~~~ll-~~~~~~~~~--~~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 143 KALSYGADIVKIAVMANSK-EDVLTLL-EITNKVDEH--ADVPLITMSMGDRGKIS 194 (228)
T ss_pred HHHHhCCCEEEEEeccCCH-HHHHHHH-HHHHHHHhc--CCCCEEEEeCCCCChhH
Confidence 4556888877653 33444 2233333 455555443 23445789999998653
No 54
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=24.34 E-value=1.1e+02 Score=28.64 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=30.7
Q ss_pred cccccccCcccc-cCCCChhHHHHHHHHHHHHhhchhhcCceeEEEecccCCCcC
Q 015809 65 GCLSLAVDDLPV-LDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGEL 118 (400)
Q Consensus 65 E~LSl~~D~~pv-l~GRTp~q~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GEL 118 (400)
+...+++|-+-+ ...+++-+... +..|..++... ..+.=|.++||+.|.+
T Consensus 138 ~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~--~~~p~i~~~MG~~G~~ 188 (224)
T PF01487_consen 138 EMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREE--PDIPVIAISMGELGRI 188 (224)
T ss_dssp HHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHH--TSSEEEEEEETGGGHH
T ss_pred HHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhc--cCCcEEEEEcCCCchh
Confidence 445577776665 34556544444 44555666654 5677788999999864
No 55
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=22.98 E-value=79 Score=31.46 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=34.7
Q ss_pred ccchhHHHHHHHHHHcCCcEEEEEEee----------cCCCCCCCCChhhhhhcc
Q 015809 4 YNWSGYLAVAEMVEKIGLKLHVSLCFH----------ALKQPKIPLPDWVSQIGE 48 (400)
Q Consensus 4 ydWs~Y~~l~~mvr~~GLKl~~vmSFH----------vgD~~~IpLP~WV~~~g~ 48 (400)
||=..|.++.+.++++|+++-+|..+= .-.-|.|.+|.||.+.-+
T Consensus 171 Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~ 225 (281)
T TIGR00677 171 YDVDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKWSKTKIPQEIMSRLE 225 (281)
T ss_pred ecHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 677889999999999998875543332 234688999999999654
No 56
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=22.83 E-value=65 Score=31.60 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=36.0
Q ss_pred ccchhHHHHHHHHHHcCCcEEEEEEee----------cCCCCCCCCChhhhhhcc
Q 015809 4 YNWSGYLAVAEMVEKIGLKLHVSLCFH----------ALKQPKIPLPDWVSQIGE 48 (400)
Q Consensus 4 ydWs~Y~~l~~mvr~~GLKl~~vmSFH----------vgD~~~IpLP~WV~~~g~ 48 (400)
||=..|.++.+.+|+.|+++-++..+- .-.-|.|.+|.|+.+.-+
T Consensus 167 fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~ 221 (272)
T TIGR00676 167 FDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVKRLE 221 (272)
T ss_pred cCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHHHHH
Confidence 677889999999999998887666555 223688999999999655
No 57
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=22.80 E-value=68 Score=32.10 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=35.1
Q ss_pred ccchhHHHHHHHHHHcC--CcEEE-EEEee-------cCCCCCCCCChhhhhhcc
Q 015809 4 YNWSGYLAVAEMVEKIG--LKLHV-SLCFH-------ALKQPKIPLPDWVSQIGE 48 (400)
Q Consensus 4 ydWs~Y~~l~~mvr~~G--LKl~~-vmSFH-------vgD~~~IpLP~WV~~~g~ 48 (400)
||=..|.++.+.|+++| .+|.+ ||-.. ....|.|++|.|+.+.-+
T Consensus 185 fd~e~~~~~~~~~~~~g~~~pI~~Gimpi~~~~~~~~~~~~~~i~iP~~i~~r~~ 239 (291)
T COG0685 185 FDVEAFERFAERVRAAGIDIPIIPGIMPVTNFKQLLRFASLCGIKIPDEIIKRLE 239 (291)
T ss_pred cCHHHHHHHHHHHHhcCCCCCeeecccccccHHHHHHHHHhcCCCChHHHHHHHh
Confidence 56678999999999997 55555 55555 667788999999998654
No 58
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=22.78 E-value=3.1e+02 Score=27.35 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=48.0
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEeecC--CCCCCCCChhhhhhcc----cCC-CeeeecCCCCccCcccccccCcccccC
Q 015809 6 WSGYLAVAEMVEKIGLKLHVSLCFHAL--KQPKIPLPDWVSQIGE----SQS-SIFYTDQSGQQFKGCLSLAVDDLPVLD 78 (400)
Q Consensus 6 Ws~Y~~l~~mvr~~GLKl~~vmSFHvg--D~~~IpLP~WV~~~g~----~~p-di~ytD~~G~rn~E~LSl~~D~~pvl~ 78 (400)
+.-.++..+.+|+.|+++++.+++-.| +.-.++ |..+.+..+ .-. .|.+.|-.|.-
T Consensus 119 l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~d~i~l~DT~G~~---------------- 181 (287)
T PRK05692 119 LERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVP-PEAVADVAERLFALGCYEISLGDTIGVG---------------- 181 (287)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCC-HHHHHHHHHHHHHcCCcEEEeccccCcc----------------
Confidence 445778999999999999998888643 121233 667666432 111 35666666633
Q ss_pred CCChhHHHHHHHHHHHHhhch
Q 015809 79 GKTPIQVYQEFCESFKSSFKP 99 (400)
Q Consensus 79 GRTp~q~Y~dfm~SF~~~F~~ 99 (400)
+| +...+.++.+++++.+
T Consensus 182 --~P-~~v~~lv~~l~~~~~~ 199 (287)
T PRK05692 182 --TP-GQVRAVLEAVLAEFPA 199 (287)
T ss_pred --CH-HHHHHHHHHHHHhCCC
Confidence 67 4556788888877653
No 59
>PRK08417 dihydroorotase; Provisional
Probab=22.59 E-value=1.5e+02 Score=30.40 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=41.1
Q ss_pred CCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccc
Q 015809 239 KTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 318 (400)
Q Consensus 239 ~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GENAl 318 (400)
..++..||..| =..++++..++|+.+++. ..|+++++ +++..|++.|+.|.+|=+.
T Consensus 173 ~~rp~~aE~~~----------v~~~~~la~~~~~~lhi~------------hvS~~~~~--~~i~~ak~~g~~vt~ev~p 228 (386)
T PRK08417 173 PGIPSIAETKE----------VAKMKELAKFYKNKVLFD------------TLALPRSL--ELLDKFKSEGEKLLKEVSI 228 (386)
T ss_pred CCCCHHHHHHH----------HHHHHHHHHHhCCCEEEE------------eCCCHHHH--HHHHHHHHCCCCEEEEech
Confidence 44455566655 367788888899999998 35888887 3445788899999888554
No 60
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=22.51 E-value=2.3e+02 Score=23.90 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=37.4
Q ss_pred CchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCee
Q 015809 258 DGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEV 312 (400)
Q Consensus 258 dGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~ 312 (400)
-|+..+.+.+++..+.|.|-+-+ .|+.....+...|..++|++
T Consensus 19 ~G~~~v~kai~~gkaklViiA~D------------~~~~~~~~i~~~c~~~~Ip~ 61 (99)
T PRK01018 19 LGSKRTIKAIKLGKAKLVIVASN------------CPKDIKEDIEYYAKLSGIPV 61 (99)
T ss_pred EcHHHHHHHHHcCCceEEEEeCC------------CCHHHHHHHHHHHHHcCCCE
Confidence 57999999999999999998622 26789999999999999996
No 61
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=22.30 E-value=79 Score=31.72 Aligned_cols=46 Identities=11% Similarity=0.374 Sum_probs=35.4
Q ss_pred ccchhHHHHHHHHHHcCCcEEEEEEee----------cCCCCCCCCChhhhhhccc
Q 015809 4 YNWSGYLAVAEMVEKIGLKLHVSLCFH----------ALKQPKIPLPDWVSQIGES 49 (400)
Q Consensus 4 ydWs~Y~~l~~mvr~~GLKl~~vmSFH----------vgD~~~IpLP~WV~~~g~~ 49 (400)
||=..|.++.+.++++|..+-++...- ...-|.|.+|.|+.+.-++
T Consensus 186 Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~ 241 (296)
T PRK09432 186 FDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDG 241 (296)
T ss_pred cchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHh
Confidence 677889999999999996655544333 3466889999999996553
No 62
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.27 E-value=1.6e+02 Score=26.71 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=50.2
Q ss_pred HHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcchHHHHHHhccCCCCcc
Q 015809 261 AAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVD 340 (400)
Q Consensus 261 ~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~ 340 (400)
..+.+++++.|..+..-.++-.|-.. .+|+.++++|++.++.-.|-+.=-|.-.....++..+|+..++ =.
T Consensus 110 ~~~~~~l~~~G~~~v~w~~~~~D~~~-----~~~~~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~----~~ 180 (191)
T TIGR02764 110 KAVLKAAESLGYTVVHWSVDSRDWKN-----PGVESIVDRVVKNTKPGDIILLHASDSAKQTVKALPTIIKKLK----EK 180 (191)
T ss_pred HHHHHHHHHcCCeEEEecCCCCccCC-----CCHHHHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHHHHHHH----HC
Confidence 45788899999998877777766553 4689999999887765434443211111112346677776663 34
Q ss_pred ceEEeecCc
Q 015809 341 LFTYQRMGA 349 (400)
Q Consensus 341 ~fTylRm~~ 349 (400)
||++..|.+
T Consensus 181 Gy~~vtl~~ 189 (191)
T TIGR02764 181 GYEFVTISE 189 (191)
T ss_pred CCEEEEHHH
Confidence 566766654
No 63
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=21.27 E-value=1.1e+02 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.9
Q ss_pred cchhHHHHHHHHHHcCCcEEEEEE
Q 015809 5 NWSGYLAVAEMVEKIGLKLHVSLC 28 (400)
Q Consensus 5 dWs~Y~~l~~mvr~~GLKl~~vmS 28 (400)
.|.|++.++++.++.|.+++.+-.
T Consensus 3 ~p~G~~a~~~~L~~~g~~v~~~~~ 26 (70)
T PF14258_consen 3 APNGTYALYQLLEEQGVKVERWRK 26 (70)
T ss_pred CchHHHHHHHHHHHCCCeeEEecc
Confidence 588999999999999999987653
No 64
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.90 E-value=2.9e+02 Score=22.85 Aligned_cols=43 Identities=12% Similarity=0.262 Sum_probs=36.9
Q ss_pred CchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCee
Q 015809 258 DGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEV 312 (400)
Q Consensus 258 dGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~ 312 (400)
-|...+.+.+++..+.|.|-+-+- ++.++..|...|..++|++
T Consensus 11 ~G~~~vlkaIk~gkakLViiA~Da------------~~~~~k~i~~~c~~~~Vpv 53 (82)
T PRK13601 11 VGAKQTLKAITNCNVLQVYIAKDA------------EEHVTKKIKELCEEKSIKI 53 (82)
T ss_pred EchHHHHHHHHcCCeeEEEEeCCC------------CHHHHHHHHHHHHhCCCCE
Confidence 368899999999999999986432 3699999999999999998
No 65
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.88 E-value=1.2e+02 Score=30.01 Aligned_cols=100 Identities=23% Similarity=0.329 Sum_probs=56.3
Q ss_pred ccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccccCCCcchHHH
Q 015809 249 AGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQ 328 (400)
Q Consensus 249 AGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GENAl~~~d~~~~~q 328 (400)
-||||+--|.|=..-++..|+.|+.= |--+++- ||+- -.+++.|+++||.+--=-|-..-| ++
T Consensus 101 mgYYNPIl~yG~e~~iq~ak~aGanG-fiivDlP-----------pEEa-~~~Rne~~k~gislvpLvaPsTtd----eR 163 (268)
T KOG4175|consen 101 MGYYNPILRYGVENYIQVAKNAGANG-FIIVDLP-----------PEEA-ETLRNEARKHGISLVPLVAPSTTD----ER 163 (268)
T ss_pred eecccHHHhhhHHHHHHHHHhcCCCc-eEeccCC-----------hHHH-HHHHHHHHhcCceEEEeeCCCChH----HH
Confidence 59999999999888888888866641 2223331 3443 468999999999976433332222 22
Q ss_pred HHHhccCCCCccceEEe--ecCcccCCCCChhhHHHHHHHhc
Q 015809 329 MKKNLFGENVVDLFTYQ--RMGAYFFSPEHFPSFTKFVRNLN 368 (400)
Q Consensus 329 i~~~~~~~~~~~~fTyl--Rm~~~l~~~~n~~~F~~FV~~m~ 368 (400)
+ +-+. ..-.+|-|+ ||+-.=-+..-=....+..++.+
T Consensus 164 m-ell~--~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvr 202 (268)
T KOG4175|consen 164 M-ELLV--EAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVR 202 (268)
T ss_pred H-HHHH--HhhcceEEEEEeccccccHHHHHHHHHHHHHHHH
Confidence 2 1111 124556665 88765333222223344444443
No 66
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=20.80 E-value=3.4e+02 Score=28.21 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEeecC--CCCCCCCChhhhhhcc------cCCCeeeecCCCCccCcccccccCccccc
Q 015809 6 WSGYLAVAEMVEKIGLKLHVSLCFHAL--KQPKIPLPDWVSQIGE------SQSSIFYTDQSGQQFKGCLSLAVDDLPVL 77 (400)
Q Consensus 6 Ws~Y~~l~~mvr~~GLKl~~vmSFHvg--D~~~IpLP~WV~~~g~------~~pdi~ytD~~G~rn~E~LSl~~D~~pvl 77 (400)
+.-++++.+++|+.|+++++.+|.-.| |.-.++ |..|.+..+ .+ .|.+.|-.|.-
T Consensus 161 l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~-~~~l~~~~~~~~~~Gad-~I~l~DT~G~a--------------- 223 (347)
T PLN02746 161 LVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVP-PSKVAYVAKELYDMGCY-EISLGDTIGVG--------------- 223 (347)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCC-HHHHHHHHHHHHHcCCC-EEEecCCcCCc---------------
Q ss_pred CCCChhHHHHHHHHHHHHhh
Q 015809 78 DGKTPIQVYQEFCESFKSSF 97 (400)
Q Consensus 78 ~GRTp~q~Y~dfm~SF~~~F 97 (400)
+| +...++++..+++|
T Consensus 224 ---~P-~~v~~lv~~l~~~~ 239 (347)
T PLN02746 224 ---TP-GTVVPMLEAVMAVV 239 (347)
T ss_pred ---CH-HHHHHHHHHHHHhC
No 67
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=20.71 E-value=1.7e+02 Score=29.47 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=46.7
Q ss_pred CChhhhhhccc---------CCCeeeecCC-------CCccCcccccccCcccccCC--------C--ChhHHHHHHHHH
Q 015809 39 LPDWVSQIGES---------QSSIFYTDQS-------GQQFKGCLSLAVDDLPVLDG--------K--TPIQVYQEFCES 92 (400)
Q Consensus 39 LP~WV~~~g~~---------~pdi~ytD~~-------G~rn~E~LSl~~D~~pvl~G--------R--Tp~q~Y~dfm~S 92 (400)
||+|+.+.-.+ .=+|||.|+. -.-...|....-|++|+... - .+-++=.+|-+-
T Consensus 51 Li~~L~~~l~~~~~~~i~w~kW~if~~DER~Vp~~~~dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~~~~~~a~~ye~~ 130 (252)
T KOG3147|consen 51 LIQVLSKLLESPYQDDIDWSKWHIFFVDERVVPLDDPDSNYGLAKRHFLSKVPIPHYNIYPIDESLIADAEEAADLYEKE 130 (252)
T ss_pred HHHHHHHHhcccccCCCCccceEEEEEeccccCCCCCcccHHHHHHhhhhhCCCCcCcEEECChhhccCHHHHHHHHHHH
Confidence 67776664333 1157998874 22235677777788887643 0 233444555555
Q ss_pred HHHhhchhhcC--ceeEEEecccCCCcC
Q 015809 93 FKSSFKPFMGT--TITGISMGLGPDGEL 118 (400)
Q Consensus 93 F~~~F~~~~~~--~I~eI~VGlGP~GEL 118 (400)
.+..|.. ++ ++.=+-+||||.|-.
T Consensus 131 l~~~v~~--~s~p~FDL~LLG~GpDGHt 156 (252)
T KOG3147|consen 131 LKALVAN--DSFPVFDLLLLGMGPDGHT 156 (252)
T ss_pred HHHHhcc--CCCcceeEEEeccCCCCCe
Confidence 5555555 22 455677899999954
No 68
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=20.30 E-value=1.4e+02 Score=25.57 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=32.4
Q ss_pred chHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeee
Q 015809 259 GYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVS 313 (400)
Q Consensus 259 GY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~ 313 (400)
..+.+.+.+++++++..+=|+... .++.+.++.+.|++.||++.
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~-----------~~~~i~~ii~~~~~~~v~v~ 172 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWS-----------EEEQIKRIIEELENHGVRVR 172 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS------------HHHHHHHHHHHHTTT-EEE
T ss_pred CHHHHHHHHHhCCCCEEEEEcCcc-----------CHHHHHHHHHHHHhCCCEEE
Confidence 478999999999999999997653 35678999999999999874
No 69
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.10 E-value=1.2e+02 Score=26.69 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEecceeecCCCCCChhhh------cccccCCCCCCchHHHHHHHhhCCcEEEEeecc---
Q 015809 210 NCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSEL------TAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMD--- 280 (400)
Q Consensus 210 drvL~~A~~~F~~~~v~l~aKv~GIHWwy~t~sHaAEl------TAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclE--- 280 (400)
+.-+...++.++..+++|.+=.+..+|+.....+..+. .+. ...++++.++.|+....+..-
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---------~~~~i~~a~~lg~~~i~~~~g~~~ 96 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEY---------LKKAIDLAKRLGAKYIVVHSGRYP 96 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHH---------HHHHHHHHHHHTBSEEEEECTTES
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHH---------HHHHHHHHHHhCCCceeecCcccc
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccc
Q 015809 281 LSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQN 316 (400)
Q Consensus 281 M~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GEN 316 (400)
-.......+....-.+-++++...|+++||.|.=||
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 97 SGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred cccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Done!