Query 015810
Match_columns 400
No_of_seqs 234 out of 364
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 19:04:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 3.6E-90 1.2E-94 670.3 23.2 248 104-400 23-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 3.1E-87 1.1E-91 640.6 24.0 236 113-394 5-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.1 1E-06 3.5E-11 64.0 2.0 40 48-95 5-44 (53)
4 2ast_B S-phase kinase-associat 96.9 0.00022 7.4E-09 66.8 1.3 40 47-94 4-43 (336)
5 2e31_A FBS1, F-box only protei 96.7 0.00047 1.6E-08 67.5 2.1 38 50-95 49-87 (297)
6 2p1m_B Transport inhibitor res 96.5 0.00051 1.7E-08 69.1 0.9 42 48-96 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 94.5 0.011 3.9E-07 56.7 1.7 41 47-95 14-54 (445)
8 3v7d_B Cell division control p 94.3 0.0067 2.3E-07 58.2 -0.4 42 47-96 10-51 (464)
9 3l2o_B F-box only protein 4; s 92.7 0.014 4.7E-07 57.6 -1.3 39 50-96 3-41 (312)
10 1p22_A F-BOX/WD-repeat protein 92.2 0.02 6.7E-07 55.1 -0.9 42 47-96 6-51 (435)
11 3ogk_B Coronatine-insensitive 91.8 0.037 1.3E-06 55.6 0.5 37 52-95 13-49 (592)
12 1zxu_A AT5G01750 protein; PFAM 24.0 2E+02 0.0067 25.7 7.3 11 233-243 166-176 (217)
13 2ypj_A Eccel5A, endoglucanase 20.1 71 0.0024 27.4 3.2 27 340-373 68-94 (155)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=3.6e-90 Score=670.32 Aligned_cols=248 Identities=40% Similarity=0.749 Sum_probs=189.2
Q ss_pred cceeeccccccCCCCCCceEEEEEEEeccC------CeEEEEeecccCCCCCCceEEEEEecCCCCcceEEEEecCCCCC
Q 015810 104 SGKLTFPISLKQPGPRGSLLQCYIKRNRSS------QTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVS 177 (400)
Q Consensus 104 ~g~ltFpisLkqPgPrd~~iqC~IkR~k~~------~tY~Lyl~l~~~~~~~gkfLLaArK~rr~~tSnYiISld~~dlS 177 (400)
..+..| |+||+|+|++|||+|+|||+| ++|||||+ .++++|||||||+|+++|+||+||+|++||+
T Consensus 23 ~~~~~f---l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dls 94 (276)
T 2fim_A 23 MEPREF---VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLS 94 (276)
T ss_dssp --CTTG---GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC--
T ss_pred HHHHHH---hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcc
Confidence 345567 999999999999999999998 58999994 4678999999999999999999999999999
Q ss_pred CCCcceeeEeeeceeecEEEEecCCCCCcccccccccccccccccccCccccCccEeEEEEEEEeeccCCCCCceeeEee
Q 015810 178 KGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVM 257 (400)
Q Consensus 178 r~S~~yvGKLRSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~~m 257 (400)
|++++|||||||||+||+|+|||+|.+++.+ .+|.++++++|||+|.||+||||++|||+|+|+|
T Consensus 95 r~s~~yvGKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~i 159 (276)
T 2fim_A 95 RGGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVII 159 (276)
T ss_dssp ----CEEEEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEEEE
T ss_pred cCCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEe
Confidence 9999999999999999999999999876532 2566778899999999999999999999999998
Q ss_pred ccCCccccCCCCCCCCccccccCCCCCCCCcccccccchhhcccccccccceEEEecCCCcccccccceEeccCCceecc
Q 015810 258 DAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA 337 (400)
Q Consensus 258 ~~Ip~s~i~~gg~~p~q~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~GRVt~a 337 (400)
|.+ . ++|+..|.++ ....+++ +..+ .+.+.+++++|+||+|+|||++|||||||+||||+|
T Consensus 160 P~~---~-~~~~~~~~~p---~~~~~~l--l~~~----------~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~a 220 (276)
T 2fim_A 160 PGM---S-AENERVPIRP---RNASDGL--LVRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 220 (276)
T ss_dssp ECB---C-TTSCBCCCCC---SSTTCSH--HHHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSC
T ss_pred cCc---c-cCCCEecccC---CCccccc--chhh----------hccCCcceEeeeccCCcccccCCEEEEecCCeeecc
Confidence 653 2 2344333221 1111211 1111 123457899999999999999999999999999999
Q ss_pred ccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccccC
Q 015810 338 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 400 (400)
Q Consensus 338 SVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlACE 400 (400)
||||||||+++ ++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 221 SvKNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 221 SVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp CTTCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred ccceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 99999999974 578999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=3.1e-87 Score=640.60 Aligned_cols=236 Identities=40% Similarity=0.753 Sum_probs=192.1
Q ss_pred ccCCCCCCceEEEEEEEeccC------CeEEEEeecccCCCCCCceEEEEEecCCCCcceEEEEecCCCCCCCCcceeeE
Q 015810 113 LKQPGPRGSLLQCYIKRNRSS------QTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGR 186 (400)
Q Consensus 113 LkqPgPrd~~iqC~IkR~k~~------~tY~Lyl~l~~~~~~~gkfLLaArK~rr~~tSnYiISld~~dlSr~S~~yvGK 186 (400)
|+||||+|++|||+|+|||+| ++||||++ .++++|||||||+++++|||||||+|++|++|++++||||
T Consensus 5 l~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGK 79 (246)
T 3c5n_A 5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK 79 (246)
T ss_dssp GGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEE
Confidence 999999999999999999998 58999984 4567899999999999999999999999999999999999
Q ss_pred eeeceeecEEEEecCCCCCcccccccccccccccccccCccccCccEeEEEEEEEeeccCCCCCceeeEeeccCCccccC
Q 015810 187 LRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIE 266 (400)
Q Consensus 187 LRSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~ 266 (400)
|||||+||+|+|||+|++++.+ .+|.++++++|||+|.||+||||++|||+|+|+||.+ . +
T Consensus 80 LrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~---~-~ 140 (246)
T 3c5n_A 80 LRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S-A 140 (246)
T ss_dssp EEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECB---C-T
T ss_pred EEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c-c
Confidence 9999999999999999876532 2466778899999999999999999999999998653 2 3
Q ss_pred CCCCCCCccccccCCCCCCCCcccccccchhhcccccccccceEEEecCCCcccccccceEeccCCceeccccceeEEEe
Q 015810 267 PGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA 346 (400)
Q Consensus 267 ~gg~~p~q~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~GRVt~aSVKNFQLv~ 346 (400)
+|+..|.++ ....+++ +..+ .+.+.+++++|+||+|+|||++|||||||+||||+|||||||||+
T Consensus 141 ~~~~~~~~p---~~~~~~~--~~~~----------~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNFqLv~ 205 (246)
T 3c5n_A 141 ENERVPIRP---RNASDGL--LVRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVH 205 (246)
T ss_dssp TSCBCCCCC---SSTTSSH--HHHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCEEEEB
T ss_pred CCCEeeccC---CCccccc--hhhh----------hccCCcceEEEeccCCcccccCCEEEEecCCeeeccccceEEEEe
Confidence 344443321 1111211 1001 123557899999999999999999999999999999999999999
Q ss_pred cccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCc
Q 015810 347 SLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 394 (400)
Q Consensus 347 ~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfD 394 (400)
++ ++++||||||||++|+|||||+|||||||||||||||||
T Consensus 206 ~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 206 AD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp TT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred cC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 74 578999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.08 E-value=1e-06 Score=63.97 Aligned_cols=40 Identities=23% Similarity=0.612 Sum_probs=32.8
Q ss_pred cCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHH
Q 015810 48 KQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (400)
Q Consensus 48 ~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (400)
++..|+.||+|+|..|+.++ | .++++.||.|||.|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 45679999999999999999 3 4789999999999999873
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.91 E-value=0.00022 Score=66.78 Aligned_cols=40 Identities=25% Similarity=0.678 Sum_probs=33.5
Q ss_pred ccCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHH
Q 015810 47 FKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIM 94 (400)
Q Consensus 47 ~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~ 94 (400)
.++..|+.||+|+|..|+..+.. +++++||.||++|++++
T Consensus 4 ~~~~~~~~LP~eil~~If~~L~~--------~d~~~~~~vc~~W~~~~ 43 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCLCL--------PELLKVSGVCKRWYRLA 43 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTSCH--------HHHHHTTSSCHHHHHHH
T ss_pred cccCChhhCCHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHh
Confidence 35678999999999999999933 37899999999999997
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.73 E-value=0.00047 Score=67.54 Aligned_cols=38 Identities=37% Similarity=0.767 Sum_probs=33.3
Q ss_pred CccCCCChHHHHHHHHhhhhcCCCCCCcccee-eecccChhHHHHHH
Q 015810 50 SCWANMPPELLRDVLLRIEASETTWPPRKNVV-ACAGVCRSWREIMK 95 (400)
Q Consensus 50 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv-~ca~vc~~wr~~~~ 95 (400)
...+.||+|||.+|+.|| |. ++++ .|+.|||+||.++.
T Consensus 49 ~~~~~LP~ell~~Il~~L-------p~-~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAEL-------PA-TELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCTTSSCHHHHHHHHHTS-------CH-HHHHHTGGGTCHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcC-------CH-HHHHHHHHHHhHHHHHHhc
Confidence 457899999999999999 66 5687 99999999999864
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.53 E-value=0.00051 Score=69.09 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=30.9
Q ss_pred cCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHHH
Q 015810 48 KQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (400)
Q Consensus 48 ~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (400)
+...|+.||+|+|..|+.++ |..+++++|+.||++|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999 7778999999999999999443
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.48 E-value=0.011 Score=56.70 Aligned_cols=41 Identities=32% Similarity=0.574 Sum_probs=35.2
Q ss_pred ccCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHH
Q 015810 47 FKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (400)
Q Consensus 47 ~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (400)
....-++.||+|||..|+..|+. +++..||.||+.|++++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~--------~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCCH--------HHHHHHHHHhHHHHhhcC
Confidence 45667999999999999999944 568999999999998774
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.33 E-value=0.0067 Score=58.24 Aligned_cols=42 Identities=17% Similarity=0.508 Sum_probs=35.8
Q ss_pred ccCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHHH
Q 015810 47 FKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (400)
Q Consensus 47 ~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (400)
.+..-++.||+|+|..|+..|+. ++++.|+.||+.|++++.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQF--------EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCH--------HHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence 45667889999999999999932 5889999999999998754
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.66 E-value=0.014 Score=57.65 Aligned_cols=39 Identities=13% Similarity=0.325 Sum_probs=33.8
Q ss_pred CccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHHH
Q 015810 50 SCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (400)
Q Consensus 50 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (400)
+-|..||.|++..|+.-|+. +++..||.|||.||.++.+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred chhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 34789999999999999954 5699999999999999854
No 10
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=92.19 E-value=0.02 Score=55.12 Aligned_cols=42 Identities=19% Similarity=0.555 Sum_probs=34.9
Q ss_pred ccCCccCCCChH----HHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHHH
Q 015810 47 FKQSCWANMPPE----LLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (400)
Q Consensus 47 ~~~~~w~~~~~e----ll~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (400)
.+.+--+.||+| ||..|+..|+. +++..||.|||.|++++.+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 455667889999 99999999964 5788999999999988753
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.77 E-value=0.037 Score=55.59 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=32.4
Q ss_pred cCCCChHHHHHHHHhhhhcCCCCCCccceeeecccChhHHHHHH
Q 015810 52 WANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (400)
Q Consensus 52 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (400)
.+.||+|+|..|+..+ ++.++.++|+-||++|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 3579999999999999 456888999999999999953
No 12
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=24.01 E-value=2e+02 Score=25.71 Aligned_cols=11 Identities=18% Similarity=0.090 Sum_probs=5.7
Q ss_pred EeEEEEEEEee
Q 015810 233 YHVAHISYELN 243 (400)
Q Consensus 233 ~ela~V~Ye~N 243 (400)
..||.|+=+.+
T Consensus 166 ~~Va~I~kk~~ 176 (217)
T 1zxu_A 166 AIVAQMHRKHT 176 (217)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEEEeeee
Confidence 35677766543
No 13
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=20.09 E-value=71 Score=27.42 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=21.1
Q ss_pred ceeEEEecccCCcCCCCCCeEEEEeeeecCCeEE
Q 015810 340 KNFQLVASLENGVAGQEHENVILQFGKVGKDVFT 373 (400)
Q Consensus 340 KNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~ 373 (400)
|||.+-..- +...|||.|.++.++++.
T Consensus 68 knfeikvdy-------~gadivlifarw~~~iwa 94 (155)
T 2ypj_A 68 KNFEIKVDY-------NGADIVLIFARWDKDIWA 94 (155)
T ss_dssp SCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred cCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 899995432 245699999999999874
Done!