BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015811
         (400 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 11/123 (8%)

Query: 30  VLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ----------VSLGFVIFGRILRSCFAP 79
            L L+      G+    Y Y++L+   C + +          +S GF IF +++     P
Sbjct: 45  ALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103

Query: 80  NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLF 139
           N  TFT+  +   A+     A  +  ++KAFG +P + +Y   + G CR G    A  + 
Sbjct: 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163

Query: 140 KEM 142
             M
Sbjct: 164 AHM 166



 Score = 31.2 bits (69), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 8/147 (5%)

Query: 105 TKLKAFGCEPNVITYNTLINGLC-RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSII 163
            K KA    P  +    L   +C + G  + AL L+ E    NG     +  N + Y   
Sbjct: 16  AKKKAIQQSPEALLKQKL--DMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCS 72

Query: 164 IDGLCKEGF----VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMV 219
           +     E      + +  ++F QM  + + PN  T+T+        +D   A  ++ +M 
Sbjct: 73  LAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK 132

Query: 220 DQGVQPNVVSSNVIMNELCKNGKMDNA 246
             G+QP + S    +   C+ G  D A
Sbjct: 133 AFGIQPRLRSYGPALFGFCRKGDADKA 159


>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana, Semet Substituted Form With Sr
          Length = 501

 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 30  VLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ----------VSLGFVIFGRILRSCFAP 79
            L L+      G+    Y Y++L+   C + +          +S GF IF + +     P
Sbjct: 45  ALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQXIVDKVVP 103

Query: 80  NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNL 138
           N  TFT+  +   A+     A     + KAFG +P + +Y   + G CR G    A  +
Sbjct: 104 NEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162


>pdb|1NNV|A Chain A, The Solution Structure Of Hi1450
          Length = 110

 Score = 30.0 bits (66), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 173 VDKAKELFLQMKYENLNPNVVTYTSL-------IHGFCHANDWNEAKGLLIE 217
           +D A ++FL+M  ENL+P  +   +L       +     A+DW E  G+LI+
Sbjct: 17  IDIAYDIFLEMAGENLDPADILLFNLQFEERGGVEFVETADDWEEEIGVLID 68


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,719,175
Number of Sequences: 62578
Number of extensions: 472198
Number of successful extensions: 1350
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1336
Number of HSP's gapped (non-prelim): 14
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)