Query 015811
Match_columns 400
No_of_seqs 695 out of 1579
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 09:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.8E-62 3.8E-67 455.6 45.0 363 9-377 435-799 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.7E-62 1.4E-66 451.7 46.8 383 2-394 397-781 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1E-57 2.2E-62 421.0 38.0 370 9-396 121-491 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.4E-56 3E-61 423.0 39.7 374 9-397 251-655 (857)
5 PLN03081 pentatricopeptide (PP 100.0 4.3E-56 9.4E-61 410.2 39.1 363 8-391 155-518 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 8.2E-56 1.8E-60 417.7 38.9 373 8-394 149-616 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-27 4.8E-32 229.4 44.8 368 9-394 531-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-26 1E-30 220.3 44.0 366 9-392 463-828 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.8E-24 6.1E-29 187.1 33.2 313 53-384 42-364 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.6E-23 3.5E-28 182.3 33.7 308 14-333 38-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 8.9E-22 1.9E-26 179.5 42.0 335 11-361 42-381 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 9E-21 2E-25 173.5 44.1 369 13-393 129-568 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 6.5E-22 1.4E-26 166.3 29.1 367 7-393 112-482 (966)
14 PRK15174 Vi polysaccharide exp 99.9 1.1E-20 2.4E-25 172.4 39.8 358 20-393 14-378 (656)
15 PRK11447 cellulose synthase su 99.9 3E-20 6.4E-25 181.0 42.9 365 18-393 276-737 (1157)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-19 4.9E-24 164.4 41.3 341 9-361 158-571 (615)
17 PRK11447 cellulose synthase su 99.9 2.1E-19 4.6E-24 175.1 42.9 382 7-395 231-699 (1157)
18 KOG4626 O-linked N-acetylgluco 99.9 1.7E-20 3.7E-25 157.9 26.5 349 7-376 146-499 (966)
19 PRK10049 pgaA outer membrane p 99.9 2.4E-18 5.1E-23 160.6 42.8 365 15-394 19-454 (765)
20 PRK10049 pgaA outer membrane p 99.9 1.1E-17 2.4E-22 156.2 42.7 356 7-377 45-470 (765)
21 KOG4422 Uncharacterized conser 99.9 1.2E-17 2.6E-22 134.9 35.2 383 7-395 203-624 (625)
22 PRK14574 hmsH outer membrane p 99.8 4.5E-16 9.8E-21 143.0 42.9 370 12-396 35-479 (822)
23 PRK14574 hmsH outer membrane p 99.8 1.1E-15 2.4E-20 140.5 42.0 364 16-393 73-510 (822)
24 KOG2076 RNA polymerase III tra 99.8 4.9E-15 1.1E-19 130.6 36.4 362 12-385 140-544 (895)
25 KOG2002 TPR-containing nuclear 99.8 1.2E-15 2.6E-20 135.3 32.5 374 7-391 266-740 (1018)
26 KOG4422 Uncharacterized conser 99.8 2.2E-15 4.8E-20 122.0 31.0 347 8-381 113-482 (625)
27 PRK09782 bacteriophage N4 rece 99.8 6E-15 1.3E-19 138.5 38.8 345 25-388 356-732 (987)
28 PRK09782 bacteriophage N4 rece 99.8 2.1E-14 4.5E-19 135.0 41.2 228 82-325 478-705 (987)
29 PF13429 TPR_15: Tetratricopep 99.8 4.2E-18 9.2E-23 140.6 13.5 262 16-289 13-275 (280)
30 TIGR00540 hemY_coli hemY prote 99.8 8.4E-15 1.8E-19 127.2 32.6 289 57-359 95-397 (409)
31 PRK10747 putative protoheme IX 99.8 7.9E-15 1.7E-19 126.7 32.0 284 59-360 97-389 (398)
32 PRK10747 putative protoheme IX 99.8 1.5E-14 3.3E-19 124.9 33.4 284 24-325 97-389 (398)
33 TIGR00540 hemY_coli hemY prote 99.8 9.6E-15 2.1E-19 126.9 31.8 285 93-392 96-395 (409)
34 PF13429 TPR_15: Tetratricopep 99.8 7E-18 1.5E-22 139.3 11.6 257 53-322 15-273 (280)
35 KOG2003 TPR repeat-containing 99.8 5.4E-15 1.2E-19 120.9 27.1 364 12-384 277-711 (840)
36 COG2956 Predicted N-acetylgluc 99.7 1.2E-13 2.7E-18 108.0 29.6 287 59-361 48-347 (389)
37 KOG2003 TPR repeat-containing 99.7 1E-14 2.2E-19 119.3 24.0 224 164-393 426-686 (840)
38 KOG2076 RNA polymerase III tra 99.7 3.7E-13 8.1E-18 119.0 35.0 344 7-359 169-553 (895)
39 COG3071 HemY Uncharacterized e 99.7 4.7E-13 1E-17 107.9 31.8 293 17-325 88-389 (400)
40 COG2956 Predicted N-acetylgluc 99.7 2.3E-13 5E-18 106.5 27.9 294 23-326 47-347 (389)
41 COG3071 HemY Uncharacterized e 99.7 7.7E-13 1.7E-17 106.7 31.2 286 59-360 97-389 (400)
42 KOG1126 DNA-binding cell divis 99.7 3.6E-14 7.7E-19 121.4 24.6 282 61-361 334-620 (638)
43 KOG0495 HAT repeat protein [RN 99.7 5E-12 1.1E-16 108.2 37.2 360 13-393 518-877 (913)
44 KOG1126 DNA-binding cell divis 99.7 5.5E-14 1.2E-18 120.2 24.2 284 26-326 334-620 (638)
45 KOG1155 Anaphase-promoting com 99.7 7.8E-13 1.7E-17 108.5 29.7 164 157-324 330-493 (559)
46 KOG1155 Anaphase-promoting com 99.7 4.7E-12 1E-16 104.0 32.5 287 89-388 235-528 (559)
47 KOG0495 HAT repeat protein [RN 99.6 9.1E-11 2E-15 100.8 38.6 338 8-359 437-780 (913)
48 KOG2002 TPR-containing nuclear 99.6 1.2E-11 2.6E-16 110.6 34.7 355 27-393 146-522 (1018)
49 KOG1915 Cell cycle control pro 99.6 2.9E-11 6.3E-16 99.8 34.2 131 9-145 105-236 (677)
50 KOG0547 Translocase of outer m 99.6 1.5E-11 3.4E-16 101.8 31.9 369 14-391 118-561 (606)
51 PRK12370 invasion protein regu 99.6 1.8E-12 3.9E-17 117.1 28.1 268 43-326 253-535 (553)
52 TIGR02521 type_IV_pilW type IV 99.6 5.3E-12 1.1E-16 101.9 25.1 202 45-255 30-231 (234)
53 KOG1915 Cell cycle control pro 99.6 3.8E-10 8.3E-15 93.4 35.2 352 13-375 143-548 (677)
54 PRK12370 invasion protein regu 99.6 1.2E-11 2.6E-16 111.8 29.1 269 78-362 253-536 (553)
55 KOG1173 Anaphase-promoting com 99.5 6.3E-11 1.4E-15 100.0 28.4 284 45-342 243-532 (611)
56 TIGR02521 type_IV_pilW type IV 99.5 2E-11 4.3E-16 98.6 25.1 201 80-290 30-231 (234)
57 KOG1129 TPR repeat-containing 99.5 3.4E-12 7.3E-17 100.3 18.8 230 119-360 226-457 (478)
58 PF12569 NARP1: NMDA receptor- 99.5 2.7E-10 5.8E-15 99.8 31.8 94 231-326 198-291 (517)
59 KOG0547 Translocase of outer m 99.5 1.6E-10 3.5E-15 95.9 27.6 336 11-360 149-565 (606)
60 PF12569 NARP1: NMDA receptor- 99.5 4E-10 8.8E-15 98.7 31.7 294 17-325 10-333 (517)
61 KOG1129 TPR repeat-containing 99.5 5.4E-12 1.2E-16 99.2 17.8 232 48-291 225-458 (478)
62 KOG1173 Anaphase-promoting com 99.5 3E-10 6.4E-15 96.0 28.5 285 80-378 243-533 (611)
63 KOG4318 Bicoid mRNA stability 99.5 9.2E-12 2E-16 110.2 19.4 274 33-347 12-286 (1088)
64 KOG4318 Bicoid mRNA stability 99.5 5.3E-11 1.2E-15 105.5 23.7 245 7-277 21-286 (1088)
65 KOG1156 N-terminal acetyltrans 99.4 1.8E-08 3.9E-13 86.9 35.6 186 6-202 70-262 (700)
66 PF13041 PPR_2: PPR repeat fam 99.4 7.6E-13 1.6E-17 77.1 5.9 50 330-379 1-50 (50)
67 PF13041 PPR_2: PPR repeat fam 99.4 8.1E-13 1.8E-17 76.9 5.8 50 9-58 1-50 (50)
68 COG3063 PilF Tfp pilus assembl 99.4 1.5E-09 3.2E-14 81.6 23.6 198 49-255 38-235 (250)
69 KOG1840 Kinesin light chain [C 99.4 3.5E-10 7.7E-15 97.9 22.9 244 46-289 199-477 (508)
70 KOG1174 Anaphase-promoting com 99.4 9.5E-09 2.1E-13 83.9 29.0 289 59-361 209-500 (564)
71 KOG1174 Anaphase-promoting com 99.4 1.1E-08 2.4E-13 83.5 29.2 298 15-326 198-500 (564)
72 KOG2376 Signal recognition par 99.4 6.4E-08 1.4E-12 82.7 34.7 370 16-397 17-521 (652)
73 COG3063 PilF Tfp pilus assembl 99.4 3.3E-09 7.3E-14 79.7 24.2 199 83-291 37-236 (250)
74 cd05804 StaR_like StaR_like; a 99.4 1.6E-08 3.4E-13 87.2 32.6 203 8-220 3-214 (355)
75 PRK11189 lipoprotein NlpI; Pro 99.4 3E-09 6.5E-14 88.3 26.6 217 61-292 41-266 (296)
76 KOG1840 Kinesin light chain [C 99.3 3E-10 6.6E-15 98.3 20.5 248 7-254 195-477 (508)
77 PRK11189 lipoprotein NlpI; Pro 99.3 2.5E-09 5.5E-14 88.7 25.3 219 24-257 39-266 (296)
78 KOG4340 Uncharacterized conser 99.3 5.6E-09 1.2E-13 81.6 24.6 295 13-325 12-338 (459)
79 cd05804 StaR_like StaR_like; a 99.3 8.3E-08 1.8E-12 82.8 33.2 306 46-360 6-335 (355)
80 KOG3785 Uncharacterized conser 99.3 6.7E-08 1.4E-12 77.6 29.3 88 18-106 29-116 (557)
81 KOG3785 Uncharacterized conser 99.3 1.1E-08 2.4E-13 81.9 24.8 126 17-145 63-214 (557)
82 KOG2047 mRNA splicing factor [ 99.3 2.5E-07 5.4E-12 80.1 34.1 335 48-392 104-536 (835)
83 PF04733 Coatomer_E: Coatomer 99.2 1.4E-09 3E-14 88.9 17.9 249 56-326 11-265 (290)
84 KOG0624 dsRNA-activated protei 99.2 1.6E-07 3.4E-12 75.2 27.9 302 9-326 36-370 (504)
85 KOG4162 Predicted calmodulin-b 99.2 3.3E-07 7.1E-12 81.0 32.1 371 9-391 321-778 (799)
86 KOG2047 mRNA splicing factor [ 99.2 1.2E-06 2.7E-11 76.0 34.8 221 170-393 360-612 (835)
87 KOG1914 mRNA cleavage and poly 99.2 1.2E-06 2.7E-11 74.4 33.6 376 6-393 15-498 (656)
88 KOG1156 N-terminal acetyltrans 99.2 4E-07 8.7E-12 78.9 31.0 243 11-267 8-257 (700)
89 KOG0548 Molecular co-chaperone 99.2 5.3E-07 1.1E-11 76.5 29.9 212 160-379 227-471 (539)
90 PF04733 Coatomer_E: Coatomer 99.1 4.6E-09 1E-13 85.9 16.3 250 89-360 9-264 (290)
91 PRK04841 transcriptional regul 99.1 1.1E-06 2.4E-11 85.7 34.2 331 55-391 383-755 (903)
92 KOG4340 Uncharacterized conser 99.1 6.8E-08 1.5E-12 75.7 20.4 294 48-357 12-335 (459)
93 KOG4162 Predicted calmodulin-b 99.1 2.1E-06 4.5E-11 76.1 31.3 340 41-388 318-739 (799)
94 KOG0624 dsRNA-activated protei 99.1 1.2E-06 2.6E-11 70.3 26.5 305 44-361 36-370 (504)
95 PRK04841 transcriptional regul 99.1 1E-06 2.2E-11 85.9 32.3 340 21-361 384-760 (903)
96 KOG1125 TPR repeat-containing 99.0 1E-07 2.2E-12 81.4 20.8 224 19-253 293-524 (579)
97 PLN02789 farnesyltranstransfer 99.0 2.5E-06 5.3E-11 71.0 28.2 205 58-274 49-267 (320)
98 KOG0985 Vesicle coat protein c 99.0 2.6E-06 5.7E-11 77.8 29.9 200 157-391 1104-1303(1666)
99 KOG0548 Molecular co-chaperone 99.0 5.6E-07 1.2E-11 76.3 24.1 233 93-342 236-469 (539)
100 PLN02789 farnesyltranstransfer 99.0 8.8E-07 1.9E-11 73.6 25.2 215 13-239 39-267 (320)
101 KOG1125 TPR repeat-containing 99.0 1.5E-07 3.2E-12 80.4 19.9 251 125-388 294-563 (579)
102 KOG1070 rRNA processing protei 99.0 8.9E-07 1.9E-11 83.3 24.8 245 34-289 1447-1698(1710)
103 KOG3616 Selective LIM binding 98.9 1E-06 2.2E-11 77.9 23.7 177 199-397 739-938 (1636)
104 KOG1070 rRNA processing protei 98.9 1.1E-06 2.5E-11 82.6 25.1 249 62-322 1441-1696(1710)
105 TIGR03302 OM_YfiO outer membra 98.9 2.8E-07 6E-12 74.3 19.3 186 9-221 31-232 (235)
106 KOG1128 Uncharacterized conser 98.9 1.6E-07 3.5E-12 82.4 18.5 220 114-360 396-615 (777)
107 KOG2376 Signal recognition par 98.9 2.7E-05 5.9E-10 67.3 31.7 318 51-388 17-438 (652)
108 KOG3617 WD40 and TPR repeat-co 98.9 2.8E-06 6.2E-11 76.0 25.2 230 20-289 737-994 (1416)
109 COG5010 TadD Flp pilus assembl 98.9 1.4E-06 3.1E-11 67.4 20.0 159 85-253 70-228 (257)
110 KOG1128 Uncharacterized conser 98.9 3.9E-07 8.3E-12 80.1 18.8 239 6-271 393-632 (777)
111 PRK10370 formate-dependent nit 98.8 1.6E-06 3.4E-11 67.1 19.4 116 242-360 54-172 (198)
112 KOG3081 Vesicle coat complex C 98.8 6.1E-06 1.3E-10 64.0 21.9 47 208-255 189-235 (299)
113 TIGR03302 OM_YfiO outer membra 98.8 1.7E-06 3.6E-11 69.8 20.3 187 44-256 31-232 (235)
114 COG5010 TadD Flp pilus assembl 98.8 2.3E-06 5.1E-11 66.2 19.5 164 156-324 66-229 (257)
115 PRK14720 transcript cleavage f 98.8 5.3E-06 1.2E-10 77.1 24.8 235 7-273 27-268 (906)
116 PRK10370 formate-dependent nit 98.8 6.1E-07 1.3E-11 69.4 15.7 119 25-146 53-174 (198)
117 KOG0985 Vesicle coat protein c 98.8 4.8E-05 1.1E-09 70.0 29.0 212 126-387 1058-1269(1666)
118 PF12854 PPR_1: PPR repeat 98.8 1.5E-08 3.2E-13 52.8 4.3 32 292-323 2-33 (34)
119 PF12854 PPR_1: PPR repeat 98.8 9.5E-09 2.1E-13 53.5 3.5 33 327-359 2-34 (34)
120 KOG1127 TPR repeat-containing 98.8 5E-06 1.1E-10 76.0 22.1 166 10-185 491-658 (1238)
121 KOG3081 Vesicle coat complex C 98.8 5.8E-06 1.3E-10 64.1 19.3 88 235-326 145-236 (299)
122 PRK15179 Vi polysaccharide bio 98.7 1.1E-05 2.4E-10 74.2 24.2 135 43-186 83-217 (694)
123 PRK15179 Vi polysaccharide bio 98.7 1.5E-06 3.2E-11 79.8 18.1 137 7-146 82-218 (694)
124 PRK14720 transcript cleavage f 98.7 2E-05 4.4E-10 73.4 25.1 239 45-343 30-268 (906)
125 PRK15359 type III secretion sy 98.7 1.2E-06 2.6E-11 64.1 14.1 92 17-110 30-121 (144)
126 PRK15359 type III secretion sy 98.7 1.5E-06 3.2E-11 63.6 14.3 110 31-146 13-122 (144)
127 KOG3617 WD40 and TPR repeat-co 98.7 5.2E-05 1.1E-09 68.3 25.8 217 10-254 756-994 (1416)
128 KOG3060 Uncharacterized conser 98.6 6.8E-05 1.5E-09 57.9 21.9 188 170-361 25-220 (289)
129 COG4783 Putative Zn-dependent 98.6 8.5E-05 1.8E-09 63.0 24.1 109 128-246 318-427 (484)
130 TIGR02552 LcrH_SycD type III s 98.6 3.8E-06 8.2E-11 61.1 14.7 110 33-145 5-114 (135)
131 TIGR02552 LcrH_SycD type III s 98.6 1.9E-06 4.1E-11 62.7 13.1 109 8-120 14-122 (135)
132 KOG3060 Uncharacterized conser 98.6 0.00018 3.8E-09 55.7 22.0 83 129-219 99-181 (289)
133 KOG3616 Selective LIM binding 98.5 0.00018 3.8E-09 64.3 24.3 46 21-69 454-500 (1636)
134 COG4783 Putative Zn-dependent 98.5 0.00013 2.8E-09 61.9 22.5 116 93-217 318-433 (484)
135 KOG1127 TPR repeat-containing 98.5 7.3E-05 1.6E-09 68.7 21.4 136 7-145 522-659 (1238)
136 PF09976 TPR_21: Tetratricopep 98.4 2.1E-05 4.5E-10 57.8 14.5 127 12-142 13-144 (145)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.9E-05 4.1E-10 67.2 15.9 124 195-324 172-295 (395)
138 PF09976 TPR_21: Tetratricopep 98.4 3E-05 6.5E-10 57.0 14.7 115 240-357 24-143 (145)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.1E-05 4.5E-10 67.0 15.4 125 83-219 171-295 (395)
140 PF13812 PPR_3: Pentatricopept 98.4 8.7E-07 1.9E-11 46.6 4.1 33 12-44 2-34 (34)
141 TIGR00756 PPR pentatricopeptid 98.4 9.7E-07 2.1E-11 46.8 4.3 33 13-45 2-34 (35)
142 PF10037 MRP-S27: Mitochondria 98.3 2E-05 4.4E-10 67.4 13.0 121 224-344 63-185 (429)
143 PF10037 MRP-S27: Mitochondria 98.3 2.6E-05 5.7E-10 66.7 13.2 118 80-203 65-184 (429)
144 PF08579 RPM2: Mitochondrial r 98.3 2.1E-05 4.6E-10 52.5 9.8 77 16-92 30-115 (120)
145 KOG2053 Mitochondrial inherita 98.3 0.0034 7.5E-08 57.6 36.6 107 22-134 20-128 (932)
146 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.7E-11 45.4 3.7 33 334-366 2-34 (35)
147 TIGR02795 tol_pal_ybgF tol-pal 98.2 8.3E-05 1.8E-09 52.6 13.1 100 12-111 3-106 (119)
148 KOG2053 Mitochondrial inherita 98.2 0.0046 1E-07 56.8 36.9 200 14-222 44-256 (932)
149 PF13812 PPR_3: Pentatricopept 98.2 4E-06 8.6E-11 44.0 4.3 33 82-114 2-34 (34)
150 cd00189 TPR Tetratricopeptide 98.2 5.7E-05 1.2E-09 50.8 11.1 96 13-110 2-97 (100)
151 PRK02603 photosystem I assembl 98.2 0.00011 2.3E-09 55.9 13.4 86 10-96 34-121 (172)
152 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00015 3.3E-09 51.3 13.0 100 47-146 3-106 (119)
153 KOG1914 mRNA cleavage and poly 98.1 0.0045 9.8E-08 53.6 34.6 175 208-384 347-527 (656)
154 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.004 8.6E-08 52.8 26.0 81 6-89 37-117 (660)
155 cd00189 TPR Tetratricopeptide 98.1 7.2E-05 1.6E-09 50.3 10.5 89 269-359 7-95 (100)
156 PRK15363 pathogenicity island 98.1 8.9E-05 1.9E-09 53.6 10.8 100 45-146 34-133 (157)
157 PLN03088 SGT1, suppressor of 98.1 0.0002 4.4E-09 61.2 14.5 101 16-120 7-107 (356)
158 PF08579 RPM2: Mitochondrial r 98.1 0.00012 2.7E-09 49.0 10.2 81 48-128 27-116 (120)
159 PLN03088 SGT1, suppressor of 98.1 0.00017 3.6E-09 61.7 13.9 90 235-326 10-99 (356)
160 PRK15363 pathogenicity island 98.0 0.00021 4.5E-09 51.7 11.9 87 271-359 44-130 (157)
161 PF05843 Suf: Suppressor of fo 98.0 0.00018 3.9E-09 59.2 13.3 128 230-360 4-135 (280)
162 PF12895 Apc3: Anaphase-promot 98.0 2E-05 4.3E-10 51.7 6.3 81 24-106 2-83 (84)
163 PF01535 PPR: PPR repeat; Int 98.0 8.5E-06 1.9E-10 41.6 3.6 30 12-41 1-30 (31)
164 PRK10153 DNA-binding transcrip 98.0 0.00039 8.5E-09 62.2 16.1 139 5-146 331-483 (517)
165 KOG0550 Molecular chaperone (D 98.0 0.0058 1.3E-07 51.2 21.2 89 237-326 259-350 (486)
166 PF12895 Apc3: Anaphase-promot 98.0 2.3E-05 5.1E-10 51.3 6.3 82 59-142 2-84 (84)
167 PF05843 Suf: Suppressor of fo 98.0 0.00038 8.3E-09 57.3 13.8 133 47-186 2-136 (280)
168 PRK10866 outer membrane biogen 97.9 0.0039 8.5E-08 50.1 19.0 58 162-219 180-239 (243)
169 CHL00033 ycf3 photosystem I as 97.9 0.00045 9.8E-09 52.3 12.6 109 27-136 15-133 (168)
170 PF14938 SNAP: Soluble NSF att 97.9 0.0018 4E-08 53.6 17.1 171 48-221 37-225 (282)
171 CHL00033 ycf3 photosystem I as 97.9 0.00048 1E-08 52.1 12.6 62 84-145 38-101 (168)
172 PRK02603 photosystem I assembl 97.9 0.00087 1.9E-08 50.9 13.6 82 231-313 39-122 (172)
173 PF12688 TPR_5: Tetratrico pep 97.9 0.0015 3.3E-08 45.6 13.4 110 14-127 4-117 (120)
174 PF14559 TPR_19: Tetratricopep 97.9 0.00014 3E-09 45.4 7.6 62 274-338 3-64 (68)
175 PRK10866 outer membrane biogen 97.9 0.0094 2E-07 48.0 19.8 179 160-358 35-238 (243)
176 COG4235 Cytochrome c biogenesi 97.9 0.0015 3.2E-08 52.4 14.8 100 225-326 154-256 (287)
177 KOG0553 TPR repeat-containing 97.9 0.00025 5.3E-09 56.5 10.3 100 236-339 90-189 (304)
178 COG4235 Cytochrome c biogenesi 97.8 0.0015 3.2E-08 52.5 14.6 113 259-375 153-268 (287)
179 PF01535 PPR: PPR repeat; Int 97.8 2.7E-05 5.9E-10 39.7 3.4 29 334-362 2-30 (31)
180 PF14559 TPR_19: Tetratricopep 97.8 9.5E-05 2.1E-09 46.1 6.1 53 22-75 2-54 (68)
181 PRK10153 DNA-binding transcrip 97.8 0.0018 4E-08 58.0 16.2 143 223-370 333-489 (517)
182 KOG0553 TPR repeat-containing 97.8 0.00039 8.5E-09 55.4 10.5 98 200-301 89-186 (304)
183 PF14938 SNAP: Soluble NSF att 97.8 0.0015 3.2E-08 54.1 14.3 130 195-324 117-264 (282)
184 COG4700 Uncharacterized protei 97.8 0.0084 1.8E-07 44.5 18.9 101 114-220 87-188 (251)
185 PF06239 ECSIT: Evolutionarily 97.8 0.0012 2.6E-08 50.4 12.1 103 225-346 45-152 (228)
186 PF06239 ECSIT: Evolutionarily 97.7 0.00099 2.1E-08 50.8 11.4 106 259-383 44-154 (228)
187 KOG0550 Molecular chaperone (D 97.7 0.015 3.3E-07 48.8 18.8 273 89-378 57-368 (486)
188 PF13414 TPR_11: TPR repeat; P 97.7 0.00012 2.6E-09 45.8 5.7 62 12-74 4-66 (69)
189 PF13432 TPR_16: Tetratricopep 97.7 0.00021 4.5E-09 44.1 6.5 57 18-75 4-60 (65)
190 PF12688 TPR_5: Tetratrico pep 97.7 0.0045 9.7E-08 43.2 13.5 56 89-144 9-66 (120)
191 PF13432 TPR_16: Tetratricopep 97.7 0.00025 5.3E-09 43.8 6.4 50 273-323 8-57 (65)
192 KOG1538 Uncharacterized conser 97.6 0.02 4.3E-07 51.0 19.4 38 102-142 621-658 (1081)
193 COG4700 Uncharacterized protei 97.6 0.014 3.1E-07 43.3 18.6 155 54-217 64-218 (251)
194 PF13414 TPR_11: TPR repeat; P 97.6 0.00076 1.6E-08 42.1 7.7 65 45-110 2-67 (69)
195 KOG1130 Predicted G-alpha GTPa 97.5 0.001 2.2E-08 55.5 9.8 132 193-324 196-342 (639)
196 PF04840 Vps16_C: Vps16, C-ter 97.5 0.04 8.8E-07 46.2 25.3 297 13-379 2-303 (319)
197 PF13525 YfiO: Outer membrane 97.5 0.026 5.7E-07 44.1 17.5 61 161-221 9-71 (203)
198 KOG1130 Predicted G-alpha GTPa 97.5 0.0022 4.8E-08 53.6 11.5 132 228-359 196-342 (639)
199 PF13525 YfiO: Outer membrane 97.5 0.016 3.4E-07 45.4 15.9 62 14-75 8-71 (203)
200 PRK10803 tol-pal system protei 97.5 0.0042 9.1E-08 50.4 12.8 96 13-110 145-246 (263)
201 PF13281 DUF4071: Domain of un 97.4 0.034 7.4E-07 47.1 17.6 76 16-91 146-227 (374)
202 PF03704 BTAD: Bacterial trans 97.4 0.0096 2.1E-07 43.8 13.1 108 11-119 3-139 (146)
203 KOG2041 WD40 repeat protein [G 97.4 0.067 1.5E-06 48.3 19.3 179 43-251 689-876 (1189)
204 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0086 1.9E-07 51.4 13.5 67 7-75 71-141 (453)
205 PF13371 TPR_9: Tetratricopept 97.3 0.0019 4.1E-08 40.9 7.5 57 19-76 3-59 (73)
206 PRK10803 tol-pal system protei 97.3 0.0084 1.8E-07 48.7 12.7 91 127-221 154-246 (263)
207 PF13371 TPR_9: Tetratricopept 97.3 0.0019 4.2E-08 40.8 7.3 54 272-326 5-58 (73)
208 KOG2796 Uncharacterized conser 97.3 0.061 1.3E-06 42.5 20.7 139 195-336 180-323 (366)
209 COG3898 Uncharacterized membra 97.2 0.093 2E-06 44.1 29.1 293 14-326 85-392 (531)
210 KOG2796 Uncharacterized conser 97.2 0.067 1.5E-06 42.3 21.2 141 158-301 178-323 (366)
211 PF04840 Vps16_C: Vps16, C-ter 97.2 0.097 2.1E-06 44.0 26.8 124 193-342 178-301 (319)
212 PF03704 BTAD: Bacterial trans 97.2 0.004 8.6E-08 45.9 9.2 70 264-334 64-138 (146)
213 COG3898 Uncharacterized membra 97.2 0.1 2.3E-06 43.8 30.4 286 58-365 96-396 (531)
214 PRK15331 chaperone protein Sic 97.1 0.043 9.3E-07 40.3 13.1 92 52-145 43-134 (165)
215 KOG2280 Vacuolar assembly/sort 97.1 0.21 4.6E-06 45.6 27.6 345 22-389 400-792 (829)
216 PRK15331 chaperone protein Sic 97.1 0.025 5.4E-07 41.5 11.6 93 16-110 42-134 (165)
217 PF12921 ATP13: Mitochondrial 97.0 0.022 4.8E-07 40.2 10.4 88 117-204 3-100 (126)
218 PF13424 TPR_12: Tetratricopep 97.0 0.0013 2.8E-08 42.3 3.9 68 117-185 6-74 (78)
219 PF13424 TPR_12: Tetratricopep 96.9 0.0036 7.7E-08 40.2 5.9 61 299-359 7-73 (78)
220 COG3118 Thioredoxin domain-con 96.9 0.094 2E-06 42.4 14.6 51 57-108 145-195 (304)
221 PF12921 ATP13: Mitochondrial 96.9 0.025 5.4E-07 40.0 10.4 28 261-288 1-28 (126)
222 KOG2041 WD40 repeat protein [G 96.9 0.32 6.9E-06 44.3 23.0 274 52-355 766-1080(1189)
223 PF13281 DUF4071: Domain of un 96.8 0.25 5.4E-06 42.1 19.9 168 157-326 141-334 (374)
224 KOG1538 Uncharacterized conser 96.7 0.43 9.3E-06 43.1 20.1 88 12-106 557-657 (1081)
225 KOG1585 Protein required for f 96.6 0.23 4.9E-06 39.0 15.1 26 48-73 33-58 (308)
226 PF07079 DUF1347: Protein of u 96.6 0.4 8.7E-06 41.3 33.2 141 21-168 16-178 (549)
227 PF13512 TPR_18: Tetratricopep 96.6 0.13 2.8E-06 36.9 11.8 89 6-95 6-96 (142)
228 PRK11906 transcriptional regul 96.6 0.23 5E-06 43.2 15.4 79 245-325 322-400 (458)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.055 1.2E-06 46.7 11.5 63 227-291 75-141 (453)
230 KOG0543 FKBP-type peptidyl-pro 96.5 0.067 1.5E-06 45.1 11.5 95 263-360 258-354 (397)
231 PRK11906 transcriptional regul 96.5 0.47 1E-05 41.3 16.8 167 8-182 245-432 (458)
232 PF10300 DUF3808: Protein of u 96.5 0.58 1.3E-05 42.0 21.4 164 123-289 195-374 (468)
233 PF10300 DUF3808: Protein of u 96.5 0.31 6.7E-06 43.7 16.5 160 162-324 193-374 (468)
234 COG4785 NlpI Lipoprotein NlpI, 96.5 0.21 4.5E-06 38.4 12.9 63 46-109 99-161 (297)
235 KOG2280 Vacuolar assembly/sort 96.5 0.7 1.5E-05 42.5 23.6 321 16-357 442-795 (829)
236 PF07079 DUF1347: Protein of u 96.5 0.5 1.1E-05 40.8 33.3 79 278-358 437-521 (549)
237 PF04053 Coatomer_WDAD: Coatom 96.3 0.32 6.8E-06 43.0 15.0 56 115-185 346-401 (443)
238 PF13428 TPR_14: Tetratricopep 96.2 0.015 3.2E-07 32.3 4.5 39 13-52 3-41 (44)
239 KOG0543 FKBP-type peptidyl-pro 96.2 0.15 3.2E-06 43.2 11.9 124 54-185 216-354 (397)
240 KOG1941 Acetylcholine receptor 96.1 0.66 1.4E-05 38.8 14.9 23 266-288 250-272 (518)
241 KOG3941 Intermediate in Toll s 96.1 0.092 2E-06 42.0 9.5 50 260-309 65-119 (406)
242 KOG4555 TPR repeat-containing 96.0 0.31 6.7E-06 34.1 11.2 92 19-111 51-145 (175)
243 COG4105 ComL DNA uptake lipopr 96.0 0.58 1.3E-05 37.3 19.0 81 46-127 35-117 (254)
244 smart00299 CLH Clathrin heavy 96.0 0.38 8.3E-06 35.0 14.3 41 162-203 12-52 (140)
245 KOG2610 Uncharacterized conser 96.0 0.35 7.5E-06 39.9 12.5 156 168-326 114-276 (491)
246 KOG1585 Protein required for f 96.0 0.59 1.3E-05 36.8 15.2 208 81-321 31-251 (308)
247 KOG2114 Vacuolar assembly/sort 96.0 0.52 1.1E-05 43.9 14.9 82 165-253 376-457 (933)
248 PF04053 Coatomer_WDAD: Coatom 96.0 0.2 4.3E-06 44.3 12.2 142 20-183 270-428 (443)
249 KOG1941 Acetylcholine receptor 95.9 0.34 7.3E-06 40.5 12.4 233 20-254 15-273 (518)
250 KOG2610 Uncharacterized conser 95.9 0.35 7.7E-06 39.9 12.2 152 58-218 115-273 (491)
251 KOG1920 IkappaB kinase complex 95.8 2 4.4E-05 42.0 19.0 31 113-144 788-820 (1265)
252 PF08631 SPO22: Meiosis protei 95.8 0.89 1.9E-05 37.7 23.2 101 118-226 86-191 (278)
253 COG1729 Uncharacterized protei 95.8 0.27 5.8E-06 39.4 11.1 89 129-221 154-244 (262)
254 PF13428 TPR_14: Tetratricopep 95.7 0.043 9.3E-07 30.4 4.8 24 267-290 6-29 (44)
255 PF08631 SPO22: Meiosis protei 95.6 1.1 2.5E-05 37.1 24.8 163 21-192 3-192 (278)
256 KOG3941 Intermediate in Toll s 95.5 0.2 4.3E-06 40.2 9.2 101 43-143 64-186 (406)
257 COG1729 Uncharacterized protei 95.4 0.97 2.1E-05 36.4 13.1 97 13-110 144-244 (262)
258 COG3118 Thioredoxin domain-con 95.3 1.3 2.8E-05 36.2 18.1 51 92-143 145-195 (304)
259 smart00299 CLH Clathrin heavy 95.2 0.78 1.7E-05 33.3 15.5 42 16-58 12-53 (140)
260 COG3629 DnrI DNA-binding trans 95.2 0.32 7E-06 39.6 9.9 77 264-341 155-236 (280)
261 COG3629 DnrI DNA-binding trans 95.1 0.3 6.6E-06 39.7 9.5 81 45-126 152-237 (280)
262 PF09205 DUF1955: Domain of un 95.1 0.78 1.7E-05 32.3 13.9 65 263-328 87-151 (161)
263 KOG2114 Vacuolar assembly/sort 95.0 3.2 6.9E-05 39.1 22.8 121 13-143 336-458 (933)
264 KOG4555 TPR repeat-containing 95.0 0.52 1.1E-05 33.0 9.0 91 90-187 52-145 (175)
265 PF09205 DUF1955: Domain of un 95.0 0.84 1.8E-05 32.2 13.2 122 21-146 12-150 (161)
266 PF07035 Mic1: Colon cancer-as 94.9 1.1 2.5E-05 33.3 16.5 133 31-185 14-148 (167)
267 PF13176 TPR_7: Tetratricopept 94.8 0.065 1.4E-06 28.1 3.6 23 14-36 2-24 (36)
268 PF13170 DUF4003: Protein of u 94.8 2 4.4E-05 35.8 19.9 139 173-313 78-233 (297)
269 KOG1258 mRNA processing protei 94.8 3.1 6.6E-05 37.6 34.3 133 10-145 44-180 (577)
270 PF10602 RPN7: 26S proteasome 94.7 0.71 1.5E-05 35.1 10.3 113 34-146 23-143 (177)
271 PF10602 RPN7: 26S proteasome 94.7 0.84 1.8E-05 34.7 10.6 96 12-107 37-139 (177)
272 PF07035 Mic1: Colon cancer-as 94.6 1.4 3E-05 32.9 14.2 99 213-323 15-115 (167)
273 COG4649 Uncharacterized protei 94.5 1.4 3E-05 32.8 12.4 123 127-255 69-195 (221)
274 PF09613 HrpB1_HrpK: Bacterial 94.5 1.4 3E-05 32.5 12.6 53 273-326 21-73 (160)
275 PF04184 ST7: ST7 protein; In 94.4 3.5 7.5E-05 36.5 16.6 164 16-199 173-338 (539)
276 PF13512 TPR_18: Tetratricopep 94.2 1.5 3.2E-05 31.6 12.5 80 161-240 14-95 (142)
277 KOG4570 Uncharacterized conser 94.1 1.2 2.5E-05 36.6 10.4 106 111-221 59-164 (418)
278 COG5107 RNA14 Pre-mRNA 3'-end 94.0 3.8 8.2E-05 35.7 22.4 131 193-326 398-531 (660)
279 PF13176 TPR_7: Tetratricopept 93.9 0.13 2.9E-06 26.9 3.6 23 300-322 2-24 (36)
280 COG1747 Uncharacterized N-term 93.8 4.5 9.8E-05 35.9 20.7 182 8-202 63-249 (711)
281 COG4649 Uncharacterized protei 93.8 2.1 4.5E-05 32.0 14.6 134 12-146 60-197 (221)
282 PF13431 TPR_17: Tetratricopep 93.8 0.1 2.2E-06 26.9 2.9 30 287-317 4-33 (34)
283 COG4105 ComL DNA uptake lipopr 93.8 2.9 6.3E-05 33.5 20.7 176 165-360 42-232 (254)
284 COG0457 NrfG FOG: TPR repeat [ 93.5 3.2 6.8E-05 32.9 28.4 118 60-184 37-157 (291)
285 PF13431 TPR_17: Tetratricopep 93.4 0.06 1.3E-06 27.8 1.6 25 7-31 9-33 (34)
286 COG0457 NrfG FOG: TPR repeat [ 93.3 3.3 7.1E-05 32.8 28.1 224 94-326 36-265 (291)
287 KOG1920 IkappaB kinase complex 93.2 9.7 0.00021 37.7 20.4 31 78-109 788-820 (1265)
288 KOG1550 Extracellular protein 93.1 7.2 0.00016 36.1 23.2 44 28-74 229-277 (552)
289 PRK15180 Vi polysaccharide bio 93.1 4.3 9.3E-05 35.7 12.7 101 155-257 321-421 (831)
290 KOG2063 Vacuolar assembly/sort 93.0 9.2 0.0002 37.1 18.8 117 12-128 505-638 (877)
291 PF04184 ST7: ST7 protein; In 93.0 6.3 0.00014 35.0 16.3 62 230-291 262-324 (539)
292 KOG4570 Uncharacterized conser 92.9 2.6 5.7E-05 34.7 10.6 101 188-290 60-163 (418)
293 PF09613 HrpB1_HrpK: Bacterial 92.4 3.4 7.3E-05 30.5 13.8 87 90-186 19-106 (160)
294 PF02259 FAT: FAT domain; Int 92.3 6.9 0.00015 33.7 21.9 65 191-255 145-212 (352)
295 TIGR02561 HrpB1_HrpK type III 92.1 3.4 7.5E-05 30.0 11.2 51 275-326 23-73 (153)
296 PF07163 Pex26: Pex26 protein; 91.9 3.2 7E-05 33.6 9.9 88 122-215 89-181 (309)
297 PF00515 TPR_1: Tetratricopept 91.9 0.48 1E-05 24.2 3.9 25 300-324 4-28 (34)
298 PF13170 DUF4003: Protein of u 91.8 6.9 0.00015 32.8 20.6 134 97-235 78-225 (297)
299 PF07719 TPR_2: Tetratricopept 91.7 0.51 1.1E-05 24.0 3.9 23 302-324 6-28 (34)
300 cd00923 Cyt_c_Oxidase_Va Cytoc 91.4 2.2 4.7E-05 28.2 7.0 46 28-73 24-69 (103)
301 COG4785 NlpI Lipoprotein NlpI, 91.1 6.1 0.00013 30.8 14.1 30 81-110 99-128 (297)
302 PF11207 DUF2989: Protein of u 91.0 3.7 8.1E-05 31.6 9.2 82 307-390 117-201 (203)
303 KOG4648 Uncharacterized conser 91.0 1.7 3.7E-05 36.2 7.9 53 236-289 106-158 (536)
304 PF13374 TPR_10: Tetratricopep 91.0 0.4 8.6E-06 25.8 3.2 27 12-38 3-29 (42)
305 PF04097 Nic96: Nup93/Nic96; 91.0 14 0.0003 34.8 19.5 65 9-75 110-181 (613)
306 PF00515 TPR_1: Tetratricopept 90.9 1 2.2E-05 22.9 4.6 26 49-74 4-29 (34)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 90.7 2.8 6E-05 27.8 7.0 27 295-321 40-66 (103)
308 PRK11619 lytic murein transgly 90.3 17 0.00036 34.5 29.0 252 85-359 103-373 (644)
309 PF02284 COX5A: Cytochrome c o 90.3 4 8.7E-05 27.4 8.2 43 66-108 30-72 (108)
310 TIGR02561 HrpB1_HrpK type III 90.2 5.7 0.00012 28.9 12.9 53 92-146 21-74 (153)
311 PF07719 TPR_2: Tetratricopept 90.1 1.3 2.8E-05 22.4 4.6 23 86-108 6-28 (34)
312 PF11207 DUF2989: Protein of u 89.8 7.7 0.00017 30.0 9.9 79 56-136 117-198 (203)
313 PF13374 TPR_10: Tetratricopep 89.6 0.91 2E-05 24.3 3.9 26 299-324 4-29 (42)
314 PF07575 Nucleopor_Nup85: Nup8 89.4 18 0.0004 33.7 18.6 114 261-376 404-539 (566)
315 COG3947 Response regulator con 89.4 11 0.00024 31.0 15.2 70 299-369 281-355 (361)
316 KOG4234 TPR repeat-containing 89.3 8.1 0.00018 29.8 9.5 91 55-146 104-198 (271)
317 KOG0890 Protein kinase of the 89.3 36 0.00079 36.9 24.1 152 16-181 1388-1542(2382)
318 COG2976 Uncharacterized protei 89.2 8.4 0.00018 29.5 14.3 89 269-362 96-189 (207)
319 PF02284 COX5A: Cytochrome c o 89.1 5.1 0.00011 26.9 10.0 78 12-90 9-88 (108)
320 COG4455 ImpE Protein of avirul 89.0 4.9 0.00011 31.4 8.3 76 119-201 4-81 (273)
321 PF00637 Clathrin: Region in C 88.7 0.28 6.1E-06 35.8 1.8 85 233-324 13-97 (143)
322 PF00637 Clathrin: Region in C 88.7 0.26 5.7E-06 36.0 1.6 85 16-107 12-96 (143)
323 KOG0276 Vesicle coat complex C 88.5 20 0.00043 32.9 12.8 82 80-182 665-746 (794)
324 PF13174 TPR_6: Tetratricopept 87.9 0.9 1.9E-05 22.8 3.0 19 306-324 9-27 (33)
325 COG4455 ImpE Protein of avirul 87.6 7 0.00015 30.6 8.4 54 88-142 8-61 (273)
326 PF06552 TOM20_plant: Plant sp 87.6 10 0.00023 28.6 9.6 41 313-361 96-136 (186)
327 KOG1550 Extracellular protein 87.5 24 0.00053 32.8 26.0 275 62-361 228-538 (552)
328 COG2909 MalT ATP-dependent tra 87.3 29 0.00063 33.5 26.4 231 90-322 424-684 (894)
329 KOG2471 TPR repeat-containing 87.3 8.7 0.00019 34.0 9.7 42 22-63 28-69 (696)
330 PF07721 TPR_4: Tetratricopept 87.2 0.93 2E-05 21.5 2.5 22 14-35 4-25 (26)
331 TIGR03504 FimV_Cterm FimV C-te 87.1 1.1 2.3E-05 24.8 3.0 24 303-326 5-28 (44)
332 COG3947 Response regulator con 86.9 16 0.00035 30.1 15.6 40 28-69 150-189 (361)
333 KOG4234 TPR repeat-containing 86.8 12 0.00026 28.9 9.2 88 237-326 105-197 (271)
334 PF13181 TPR_8: Tetratricopept 86.6 1.7 3.8E-05 21.9 3.7 27 13-39 3-29 (34)
335 PF06552 TOM20_plant: Plant sp 86.6 12 0.00026 28.4 9.3 109 27-146 7-137 (186)
336 PF13174 TPR_6: Tetratricopept 86.5 2.1 4.6E-05 21.3 3.9 22 88-109 7-28 (33)
337 COG2909 MalT ATP-dependent tra 86.4 33 0.00071 33.2 26.0 226 126-357 425-684 (894)
338 TIGR03504 FimV_Cterm FimV C-te 86.3 1.7 3.7E-05 24.0 3.5 23 17-39 5-27 (44)
339 COG2976 Uncharacterized protei 86.1 14 0.00029 28.5 13.3 124 194-327 56-189 (207)
340 KOG4648 Uncharacterized conser 86.1 5.8 0.00013 33.3 7.8 93 200-296 105-197 (536)
341 COG1747 Uncharacterized N-term 86.1 25 0.00055 31.6 23.8 181 78-272 63-249 (711)
342 PF13181 TPR_8: Tetratricopept 86.0 2.6 5.5E-05 21.3 4.1 27 48-74 3-29 (34)
343 PF07163 Pex26: Pex26 protein; 85.9 18 0.00039 29.6 13.1 128 12-139 36-181 (309)
344 PRK09687 putative lyase; Provi 85.6 20 0.00043 29.9 27.2 17 261-277 205-221 (280)
345 PF13929 mRNA_stabil: mRNA sta 84.8 21 0.00045 29.5 15.4 63 259-321 199-262 (292)
346 PRK09687 putative lyase; Provi 84.8 21 0.00047 29.6 26.6 235 43-308 34-278 (280)
347 PF08424 NRDE-2: NRDE-2, neces 84.7 24 0.00052 30.1 16.3 139 6-146 14-184 (321)
348 KOG1258 mRNA processing protei 84.4 33 0.00072 31.4 31.0 96 14-110 82-180 (577)
349 PF10579 Rapsyn_N: Rapsyn N-te 83.5 2.3 5.1E-05 26.9 3.5 47 309-355 18-66 (80)
350 COG5159 RPN6 26S proteasome re 82.8 25 0.00055 28.9 11.2 128 198-325 9-153 (421)
351 PF10579 Rapsyn_N: Rapsyn N-te 82.4 6.2 0.00013 25.0 5.1 45 274-318 18-64 (80)
352 KOG0276 Vesicle coat complex C 81.6 31 0.00067 31.8 10.8 84 45-143 665-748 (794)
353 TIGR02508 type_III_yscG type I 80.8 14 0.00031 24.8 7.6 86 26-119 20-105 (115)
354 PRK11619 lytic murein transgly 80.8 53 0.0012 31.3 30.4 78 173-253 295-372 (644)
355 KOG4077 Cytochrome c oxidase, 79.8 19 0.0004 25.4 7.1 61 64-125 67-127 (149)
356 KOG1464 COP9 signalosome, subu 79.7 32 0.00069 28.1 16.3 199 154-353 23-252 (440)
357 KOG4077 Cytochrome c oxidase, 79.5 19 0.00041 25.4 7.0 47 280-326 67-113 (149)
358 KOG1464 COP9 signalosome, subu 79.3 33 0.00071 28.0 17.6 158 129-289 40-218 (440)
359 PF09670 Cas_Cas02710: CRISPR- 79.1 40 0.00086 29.6 10.9 57 18-75 138-198 (379)
360 KOG4507 Uncharacterized conser 78.9 12 0.00026 34.1 7.5 87 59-146 620-706 (886)
361 PF14689 SPOB_a: Sensor_kinase 78.4 5.9 0.00013 23.9 4.1 29 331-359 22-50 (62)
362 PF13762 MNE1: Mitochondrial s 77.5 25 0.00054 25.7 11.3 96 37-132 28-131 (145)
363 KOG0686 COP9 signalosome, subu 76.9 50 0.0011 28.8 14.2 62 48-109 152-215 (466)
364 PF10345 Cohesin_load: Cohesin 76.8 70 0.0015 30.4 28.8 198 44-253 28-251 (608)
365 smart00028 TPR Tetratricopepti 75.3 4.9 0.00011 19.1 2.9 26 13-38 3-28 (34)
366 PRK10941 hypothetical protein; 75.0 46 0.001 27.5 10.2 63 83-146 183-245 (269)
367 PF13929 mRNA_stabil: mRNA sta 74.4 49 0.0011 27.5 17.3 135 243-377 144-288 (292)
368 PRK10941 hypothetical protein; 74.0 49 0.0011 27.3 10.1 77 49-126 184-261 (269)
369 KOG0686 COP9 signalosome, subu 73.5 63 0.0014 28.3 13.3 63 13-75 152-216 (466)
370 KOG2066 Vacuolar assembly/sort 73.4 89 0.0019 30.0 26.0 102 18-128 363-467 (846)
371 PF09477 Type_III_YscG: Bacter 72.9 27 0.00058 23.8 8.3 79 26-111 21-99 (116)
372 PF14853 Fis1_TPR_C: Fis1 C-te 72.3 16 0.00035 21.2 4.6 22 305-326 9-30 (53)
373 cd00280 TRFH Telomeric Repeat 72.0 42 0.00091 25.6 9.5 21 89-109 119-139 (200)
374 KOG0890 Protein kinase of the 71.9 1.7E+02 0.0036 32.5 22.1 152 51-216 1388-1542(2382)
375 PF10366 Vps39_1: Vacuolar sor 71.1 31 0.00067 23.7 7.7 27 334-360 41-67 (108)
376 PF07575 Nucleopor_Nup85: Nup8 71.0 25 0.00053 32.9 8.1 62 80-143 404-465 (566)
377 PF14689 SPOB_a: Sensor_kinase 70.9 12 0.00026 22.5 4.1 23 121-143 28-50 (62)
378 PF02259 FAT: FAT domain; Int 70.5 69 0.0015 27.5 22.3 193 17-221 4-213 (352)
379 PF13762 MNE1: Mitochondrial s 70.3 40 0.00086 24.7 11.0 80 300-380 42-128 (145)
380 PRK15180 Vi polysaccharide bio 70.3 82 0.0018 28.3 24.6 126 17-146 295-421 (831)
381 PF04097 Nic96: Nup93/Nic96; 70.0 1E+02 0.0022 29.3 18.0 88 234-326 265-356 (613)
382 PF11848 DUF3368: Domain of un 69.8 18 0.00038 20.4 4.8 33 22-54 13-45 (48)
383 cd08819 CARD_MDA5_2 Caspase ac 69.7 28 0.00061 22.7 7.0 63 318-386 23-85 (88)
384 PF11848 DUF3368: Domain of un 69.3 16 0.00035 20.6 4.2 32 344-375 14-45 (48)
385 PF14853 Fis1_TPR_C: Fis1 C-te 69.1 20 0.00044 20.8 4.9 37 337-375 6-42 (53)
386 PF11663 Toxin_YhaV: Toxin wit 67.7 8.4 0.00018 27.4 3.3 30 94-125 108-137 (140)
387 PF14561 TPR_20: Tetratricopep 66.3 35 0.00076 22.5 6.5 56 43-98 19-75 (90)
388 KOG2063 Vacuolar assembly/sort 65.6 1.5E+02 0.0032 29.4 18.2 120 84-203 507-637 (877)
389 PF12926 MOZART2: Mitotic-spin 65.4 35 0.00076 22.2 7.6 42 32-73 29-70 (88)
390 KOG2297 Predicted translation 65.2 82 0.0018 26.4 15.1 17 229-245 323-339 (412)
391 KOG0376 Serine-threonine phosp 65.2 21 0.00045 31.7 5.8 103 235-342 12-115 (476)
392 KOG1308 Hsp70-interacting prot 65.1 5.8 0.00013 33.3 2.5 50 94-144 127-176 (377)
393 COG0790 FOG: TPR repeat, SEL1 64.9 82 0.0018 26.3 23.0 151 23-188 53-222 (292)
394 PF11846 DUF3366: Domain of un 64.8 46 0.001 25.7 7.4 32 294-325 141-172 (193)
395 PF11663 Toxin_YhaV: Toxin wit 64.6 7.3 0.00016 27.7 2.5 29 346-376 109-137 (140)
396 KOG4507 Uncharacterized conser 64.6 1.2E+02 0.0026 28.2 11.6 100 204-305 619-718 (886)
397 KOG1839 Uncharacterized protei 64.3 1.6E+02 0.0036 30.2 12.0 163 18-180 939-1122(1236)
398 PF11846 DUF3366: Domain of un 64.3 48 0.001 25.7 7.4 34 113-146 141-174 (193)
399 COG0735 Fur Fe2+/Zn2+ uptake r 63.8 56 0.0012 24.0 7.8 29 52-80 26-54 (145)
400 PF09454 Vps23_core: Vps23 cor 63.8 19 0.0004 22.0 3.9 49 79-128 6-54 (65)
401 KOG1308 Hsp70-interacting prot 63.6 5.6 0.00012 33.4 2.1 88 23-112 126-213 (377)
402 cd00280 TRFH Telomeric Repeat 63.4 56 0.0012 25.0 6.9 66 278-346 85-157 (200)
403 PRK10564 maltose regulon perip 63.2 16 0.00034 30.3 4.5 36 335-370 260-295 (303)
404 COG0790 FOG: TPR repeat, SEL1 63.2 89 0.0019 26.1 20.8 189 170-371 54-276 (292)
405 PF09454 Vps23_core: Vps23 cor 63.2 31 0.00067 21.1 4.8 46 11-57 8-53 (65)
406 KOG2581 26S proteasome regulat 62.9 1.1E+02 0.0023 27.0 16.5 137 6-146 119-277 (493)
407 PRK10564 maltose regulon perip 62.9 21 0.00045 29.7 5.2 38 82-119 258-295 (303)
408 PF11817 Foie-gras_1: Foie gra 62.1 35 0.00076 27.8 6.5 62 157-218 178-244 (247)
409 PF08424 NRDE-2: NRDE-2, neces 61.7 1E+02 0.0022 26.3 18.0 117 99-223 49-185 (321)
410 TIGR02508 type_III_yscG type I 61.1 49 0.0011 22.4 7.4 79 61-146 20-98 (115)
411 COG5108 RPO41 Mitochondrial DN 60.6 83 0.0018 29.6 8.7 75 16-93 33-115 (1117)
412 COG0735 Fur Fe2+/Zn2+ uptake r 60.4 58 0.0013 23.9 6.7 45 197-241 25-69 (145)
413 PRK13342 recombination factor 60.0 1.3E+02 0.0028 26.9 18.7 32 206-237 244-275 (413)
414 PF09670 Cas_Cas02710: CRISPR- 60.0 1.2E+02 0.0027 26.7 10.8 56 200-256 139-198 (379)
415 KOG1586 Protein required for f 59.4 92 0.002 25.1 18.6 24 165-188 162-185 (288)
416 PF11817 Foie-gras_1: Foie gra 59.3 75 0.0016 25.9 7.9 59 84-142 181-244 (247)
417 COG5191 Uncharacterized conser 59.2 31 0.00066 28.8 5.4 71 5-76 101-172 (435)
418 KOG1586 Protein required for f 58.7 96 0.0021 25.0 18.8 26 198-223 160-185 (288)
419 KOG2396 HAT (Half-A-TPR) repea 58.3 1.5E+02 0.0032 27.0 33.0 91 294-387 456-550 (568)
420 PF02184 HAT: HAT (Half-A-TPR) 56.1 26 0.00056 17.8 2.9 21 313-335 3-23 (32)
421 KOG0687 26S proteasome regulat 55.0 1.3E+02 0.0029 25.5 14.1 134 188-325 66-209 (393)
422 KOG0376 Serine-threonine phosp 54.9 42 0.00091 29.9 5.9 106 16-126 9-115 (476)
423 PF12862 Apc5: Anaphase-promot 54.9 60 0.0013 21.5 6.6 54 21-74 8-69 (94)
424 KOG4521 Nuclear pore complex, 54.8 2.6E+02 0.0056 28.7 12.3 152 126-284 930-1124(1480)
425 smart00386 HAT HAT (Half-A-TPR 54.4 25 0.00054 17.0 4.0 27 26-53 2-28 (33)
426 PF12862 Apc5: Anaphase-promot 54.1 62 0.0013 21.4 7.0 54 167-220 8-69 (94)
427 PF04190 DUF410: Protein of un 53.0 1.3E+02 0.0028 24.8 14.6 28 154-181 87-114 (260)
428 cd08819 CARD_MDA5_2 Caspase ac 52.9 63 0.0014 21.2 7.0 16 128-143 48-63 (88)
429 KOG0991 Replication factor C, 52.8 1.2E+02 0.0027 24.4 12.8 92 237-331 169-272 (333)
430 KOG4642 Chaperone-dependent E3 52.5 1.2E+02 0.0027 24.5 10.4 118 202-323 20-143 (284)
431 cd07153 Fur_like Ferric uptake 51.7 56 0.0012 22.6 5.4 45 17-61 6-50 (116)
432 KOG3364 Membrane protein invol 51.3 92 0.002 22.6 9.5 68 43-110 29-100 (149)
433 KOG4567 GTPase-activating prot 50.4 1.6E+02 0.0034 24.9 8.9 42 67-108 264-305 (370)
434 PF01475 FUR: Ferric uptake re 50.1 48 0.001 23.2 4.9 45 16-60 12-56 (120)
435 KOG1839 Uncharacterized protei 50.1 3E+02 0.0066 28.5 11.3 161 54-214 940-1121(1236)
436 PF09868 DUF2095: Uncharacteri 49.0 86 0.0019 21.7 5.4 24 53-76 68-91 (128)
437 COG2256 MGS1 ATPase related to 48.7 1.9E+02 0.0042 25.6 18.3 53 154-206 243-298 (436)
438 KOG0128 RNA-binding protein SA 48.2 2.8E+02 0.006 27.2 30.9 133 9-144 111-259 (881)
439 PF15297 CKAP2_C: Cytoskeleton 48.0 1.8E+02 0.0039 25.0 9.6 63 63-127 120-186 (353)
440 KOG4642 Chaperone-dependent E3 47.1 1.5E+02 0.0034 24.0 10.7 16 168-183 89-104 (284)
441 PF04090 RNA_pol_I_TF: RNA pol 46.6 1.4E+02 0.003 23.4 7.3 28 48-75 43-70 (199)
442 PF10255 Paf67: RNA polymerase 46.5 1.3E+02 0.0028 26.6 7.6 99 155-254 70-191 (404)
443 PF02847 MA3: MA3 domain; Int 46.0 96 0.0021 21.3 6.3 60 15-76 6-67 (113)
444 KOG3364 Membrane protein invol 46.0 1.1E+02 0.0025 22.1 9.9 24 303-326 77-100 (149)
445 PF08311 Mad3_BUB1_I: Mad3/BUB 45.5 1.1E+02 0.0024 21.8 8.2 43 175-217 81-124 (126)
446 cd07153 Fur_like Ferric uptake 45.3 82 0.0018 21.8 5.4 37 95-131 14-50 (116)
447 PF14561 TPR_20: Tetratricopep 45.1 88 0.0019 20.6 8.4 54 80-133 21-75 (90)
448 KOG2471 TPR repeat-containing 44.9 2.5E+02 0.0053 25.7 15.8 107 271-379 249-381 (696)
449 COG5108 RPO41 Mitochondrial DN 44.9 2.4E+02 0.0053 26.8 9.1 73 162-237 33-113 (1117)
450 PRK12798 chemotaxis protein; R 44.6 2.3E+02 0.005 25.2 20.0 86 94-183 125-211 (421)
451 KOG4279 Serine/threonine prote 44.2 3.1E+02 0.0067 26.6 12.6 122 133-262 180-320 (1226)
452 KOG2659 LisH motif-containing 43.1 1.7E+02 0.0037 23.4 9.1 57 87-143 70-130 (228)
453 PHA02875 ankyrin repeat protei 43.0 2.4E+02 0.0052 25.1 15.3 236 31-289 15-265 (413)
454 PRK11639 zinc uptake transcrip 42.9 1.5E+02 0.0032 22.5 7.6 60 184-244 18-77 (169)
455 PF09986 DUF2225: Uncharacteri 42.4 1.7E+02 0.0038 23.2 11.5 22 89-110 173-194 (214)
456 PRK14700 recombination factor 42.3 2.1E+02 0.0046 24.1 18.2 67 158-224 124-198 (300)
457 KOG2062 26S proteasome regulat 41.8 3.4E+02 0.0073 26.4 19.7 26 160-185 213-238 (929)
458 PF02847 MA3: MA3 domain; Int 41.6 1.1E+02 0.0025 20.9 7.4 61 266-328 6-68 (113)
459 PF01475 FUR: Ferric uptake re 41.3 92 0.002 21.7 5.2 42 89-130 15-56 (120)
460 PF04090 RNA_pol_I_TF: RNA pol 39.9 1.8E+02 0.004 22.8 7.0 53 13-66 43-96 (199)
461 PRK11639 zinc uptake transcrip 39.4 1.7E+02 0.0036 22.2 8.0 36 95-130 39-74 (169)
462 PRK12798 chemotaxis protein; R 39.2 2.8E+02 0.0061 24.7 21.2 193 128-331 124-329 (421)
463 PF13934 ELYS: Nuclear pore co 39.1 2E+02 0.0044 23.1 15.0 106 230-346 79-186 (226)
464 PF07064 RIC1: RIC1; InterPro 38.9 2.2E+02 0.0048 23.5 14.6 25 84-108 85-109 (258)
465 PF04762 IKI3: IKI3 family; I 38.9 4.4E+02 0.0095 26.9 17.0 29 228-256 813-843 (928)
466 KOG4814 Uncharacterized conser 38.9 3.2E+02 0.007 26.0 8.9 87 21-109 364-456 (872)
467 PRK09462 fur ferric uptake reg 38.8 1.6E+02 0.0034 21.7 7.8 21 62-82 33-53 (148)
468 KOG4567 GTPase-activating prot 38.7 2.4E+02 0.0053 23.9 9.7 43 248-290 264-306 (370)
469 PF15297 CKAP2_C: Cytoskeleton 38.4 2.6E+02 0.0057 24.1 9.6 62 279-342 120-185 (353)
470 PF08311 Mad3_BUB1_I: Mad3/BUB 38.3 1.5E+02 0.0032 21.1 9.0 43 280-322 81-124 (126)
471 KOG2297 Predicted translation 37.0 2.6E+02 0.0057 23.7 17.7 72 206-282 269-341 (412)
472 PRK13342 recombination factor 36.9 3.1E+02 0.0067 24.5 18.4 57 240-296 243-304 (413)
473 KOG4814 Uncharacterized conser 36.4 3.2E+02 0.0069 26.0 8.5 85 238-324 365-455 (872)
474 PRK09857 putative transposase; 36.2 2.7E+02 0.0057 23.5 9.0 65 301-366 210-274 (292)
475 PF06855 DUF1250: Protein of u 36.1 39 0.00086 18.8 2.1 35 4-38 8-42 (46)
476 PF12926 MOZART2: Mitotic-spin 35.9 1.3E+02 0.0027 19.8 7.8 45 102-146 29-73 (88)
477 PRK09857 putative transposase; 35.6 2.7E+02 0.0059 23.5 9.1 54 92-146 217-270 (292)
478 PF04910 Tcf25: Transcriptiona 35.5 3.1E+02 0.0066 24.1 21.5 57 199-255 110-167 (360)
479 PF09868 DUF2095: Uncharacteri 34.9 1.6E+02 0.0034 20.5 5.3 39 87-126 67-105 (128)
480 PF04910 Tcf25: Transcriptiona 34.9 3.1E+02 0.0068 24.0 21.8 111 156-272 99-234 (360)
481 PF10345 Cohesin_load: Cohesin 34.4 4.2E+02 0.0091 25.3 34.0 188 28-219 38-252 (608)
482 KOG4521 Nuclear pore complex, 34.2 5.5E+02 0.012 26.6 13.1 126 81-215 983-1125(1480)
483 PRK13800 putative oxidoreducta 34.1 5.2E+02 0.011 26.3 27.2 249 43-326 632-881 (897)
484 COG0819 TenA Putative transcri 33.7 2.5E+02 0.0054 22.5 8.1 51 333-384 156-207 (218)
485 PF00244 14-3-3: 14-3-3 protei 33.4 2.6E+02 0.0057 22.6 10.3 166 17-185 7-197 (236)
486 PF08542 Rep_fac_C: Replicatio 32.9 1.4E+02 0.003 19.3 5.5 48 295-344 3-50 (89)
487 KOG0403 Neoplastic transformat 32.8 3.7E+02 0.0081 24.2 18.1 336 15-379 218-586 (645)
488 PF02607 B12-binding_2: B12 bi 32.8 97 0.0021 19.5 3.9 33 24-56 14-46 (79)
489 PRK13800 putative oxidoreducta 32.8 5.4E+02 0.012 26.1 27.4 109 261-379 755-864 (897)
490 COG5187 RPN7 26S proteasome re 32.6 3E+02 0.0066 23.1 12.9 98 156-255 114-220 (412)
491 KOG2422 Uncharacterized conser 32.2 4.3E+02 0.0094 24.8 15.8 177 21-202 248-460 (665)
492 PF10516 SHNi-TPR: SHNi-TPR; 32.0 86 0.0019 16.7 3.5 26 13-38 3-28 (38)
493 TIGR02710 CRISPR-associated pr 31.9 3.6E+02 0.0079 23.8 11.0 54 18-71 137-196 (380)
494 PF12796 Ank_2: Ankyrin repeat 31.7 1.1E+02 0.0025 19.5 4.2 13 103-115 74-86 (89)
495 PF09986 DUF2225: Uncharacteri 31.1 2.7E+02 0.0059 22.1 10.8 26 232-257 170-195 (214)
496 KOG0545 Aryl-hydrocarbon recep 30.7 3E+02 0.0066 22.5 8.4 59 162-221 235-293 (329)
497 COG4003 Uncharacterized protei 30.4 1.5E+02 0.0033 19.0 5.0 24 53-76 38-61 (98)
498 PHA02537 M terminase endonucle 30.4 2.9E+02 0.0063 22.3 9.3 26 198-223 89-114 (230)
499 PHA02537 M terminase endonucle 30.4 2.9E+02 0.0064 22.3 10.5 30 230-259 86-115 (230)
500 PF12968 DUF3856: Domain of Un 30.3 2E+02 0.0043 20.4 5.0 62 117-183 56-126 (144)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-62 Score=455.59 Aligned_cols=363 Identities=22% Similarity=0.396 Sum_probs=263.3
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHc--CCCcccccccCChhhHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTN--GNGEIGVVFKPNTVTYSIIIDG 166 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 166 (400)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .+ +.||..+|+.++.+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g------i~PD~vTynaLI~a 588 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP------IDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC------CCCcHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777754 22 56777777777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811 167 LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA 246 (400)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 246 (400)
|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777777777777677777777777777777777777777777777777
Q ss_pred CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 015811 327 GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGL 377 (400)
Q Consensus 327 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (400)
|+.||..+|+.++.+|.+.|+.++|.+++++|.+.|+.||..+|++++..|
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777776543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.7e-62 Score=451.73 Aligned_cols=383 Identities=20% Similarity=0.317 Sum_probs=370.8
Q ss_pred CCCCCCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccH
Q 015811 2 RHMHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNV 81 (400)
Q Consensus 2 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 81 (400)
...+..+++...++.++..|.+.|.+++|..+|+.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||.
T Consensus 397 ~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~ 472 (1060)
T PLN03218 397 EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADC 472 (1060)
T ss_pred HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence 34455678888899999999999999999999999974 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811 82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS 161 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+ +.||..+|+
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G------v~PD~vTYn 546 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKPDRVVFN 546 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------CCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH--cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKY--ENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK 239 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (400)
.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 999999999999999999999986 578999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015811 240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSL 319 (400)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 319 (400)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCC
Q 015811 320 YNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNS 394 (400)
Q Consensus 320 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (400)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|..+...+.
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998777664
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-57 Score=420.99 Aligned_cols=370 Identities=19% Similarity=0.290 Sum_probs=248.6
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+ ||..+|+.++
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li 196 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTII 196 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444444431 3444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++...|..+.+.+++..+.+.+ +.+|..+|+.++.+|+
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g------~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG------VVGDTFVSCALIDMYS 270 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC------CCccceeHHHHHHHHH
Confidence 4444444444444444444444444444444444333333333333333333333333 4566677777778888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811 169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR 248 (400)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 248 (400)
+.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 271 k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 271 KCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 8888888888887775 357778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811 249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI 328 (400)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 328 (400)
++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~ 422 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888775 36777888888888888888888888888888888
Q ss_pred CcCHHHHHHHHHHHhccchHHHHHHHHHHHhh-CCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCCCC
Q 015811 329 KPTVVTYNTLFHGLFEIRQAERALKLFVEMQG-NDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGN 396 (400)
Q Consensus 329 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (400)
.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|..+.+.+...
T Consensus 423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~ 491 (697)
T PLN03081 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491 (697)
T ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC
Confidence 88888888888888888888888888888864 578888888888888888888888888777766443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-56 Score=422.95 Aligned_cols=374 Identities=21% Similarity=0.296 Sum_probs=318.8
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
||+.+||.+|.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.|+
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|+++|++|...+ +.||..+|+.++.+|+
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN------VSPDEITIASVLSACA 400 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCCceeHHHHHHHHh
Confidence 99999999999999999886 5788889999999999999999999999998877 7888888888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811 169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR 248 (400)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 248 (400)
+.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888888888888888888888888888888888888887753 466677777777777777777777
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC------------------------------CCCHH
Q 015811 249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC------------------------------KHDDF 298 (400)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~ 298 (400)
+|++|.. +++||..+|+.++.+|++.|+.+.+.+++..+.+.|+ .||..
T Consensus 477 lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~ 555 (857)
T PLN03077 477 FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV 555 (857)
T ss_pred HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChh
Confidence 7777764 3667777666666555555444444444444433332 56888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh-hCCCCCChhhHHHHHHHh
Q 015811 299 SYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ-GNDVAADTCTYRTFIDGL 377 (400)
Q Consensus 299 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~ 377 (400)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 789999999999999999
Q ss_pred hcCCcchhhHhhhhCCCCCC
Q 015811 378 CVRPQVRFTYARRKGNSGNT 397 (400)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~ 397 (400)
++.|++++|..+.+.+...+
T Consensus 636 ~r~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITP 655 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCC
Confidence 99999999999999986544
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-56 Score=410.16 Aligned_cols=363 Identities=16% Similarity=0.263 Sum_probs=234.8
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
.||+.+|+.++..|.+.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 3566667777777777777777777776665 356666777777777777777777777777666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL 167 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (400)
+.+|+..|....+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|. ++|..+|+.++.+|
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----------~~~~vt~n~li~~y 300 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----------EKTTVAWNSMLAGY 300 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----------CCChhHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666653 34556666666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811 168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS 247 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (400)
++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh-C
Q 015811 248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF-K 326 (400)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~ 326 (400)
++|+.|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .
T Consensus 381 ~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 381 NVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 6666653 2455666666666666666666666666666666666666666666666666666666666666654 3
Q ss_pred CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811 327 GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK 391 (400)
Q Consensus 327 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 391 (400)
|+.|+..+|+.++.+|.+.|+.++|.+++++| ++.|+..+|++|+.+|+..|+++.|....+
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 56666666666666666666666666665544 345566666666666666666655544443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-56 Score=417.67 Aligned_cols=373 Identities=23% Similarity=0.338 Sum_probs=256.5
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
+||+.+||.+|.+|.+.|++++|+++|++|...|+.||..+|+.++.+|+..+++..+.+++..+.+.|+.||..+++.|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 47999999999999999999999999999999999999999888888877777777777777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL 167 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (400)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...+ +.||..+|+.++.+|
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS------VDPDLMTITSVISAC 298 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHH
Confidence 777777766666666666664 4566666666666666666666666666666655 556666666666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811 168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS 247 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (400)
++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHH
Confidence 6666666666666666555555555555555555555555555555555543 234455555555555555555555
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC-
Q 015811 248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK- 326 (400)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 326 (400)
++|++|.+.++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 454 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 5555555555555555555555555555555555555555555555555555555555554444444444444443321
Q ss_pred -----------------------------CC-------------------------------------------------
Q 015811 327 -----------------------------GI------------------------------------------------- 328 (400)
Q Consensus 327 -----------------------------~~------------------------------------------------- 328 (400)
++
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 12
Q ss_pred ----------------CcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhC
Q 015811 329 ----------------KPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKG 392 (400)
Q Consensus 329 ----------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 392 (400)
.||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|..+++.
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 3466678888889999999999999999999999999999999999999999999999988877
Q ss_pred CC
Q 015811 393 NS 394 (400)
Q Consensus 393 ~~ 394 (400)
+.
T Consensus 615 M~ 616 (857)
T PLN03077 615 ME 616 (857)
T ss_pred HH
Confidence 65
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.2e-27 Score=229.44 Aligned_cols=368 Identities=13% Similarity=0.095 Sum_probs=255.4
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
.+..++..+...+.+.|++++|..+++++.+.+ +.+...+..++..+...|++++|.++++.+.+.. +.+...|..+.
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 608 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG 608 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 344455555555555555555555555554443 3344455555555666666666666666655542 33555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
.++...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.... +.+..++..++..+.
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-------PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHH
Confidence 66666666666666666666543 3345556666666666666666666666666543 445566666677777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811 169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR 248 (400)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 248 (400)
..|++++|.++++.+.+.. +.+...+..+...+...|++++|...++.+...+ |+..++..+..++.+.|++++|.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777777766553 3355666667777777778888888777777653 444666677777888888888888
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811 249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI 328 (400)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 328 (400)
.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +++...++.+...+...|+ .+|+..++++....
T Consensus 758 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~- 833 (899)
T TIGR02917 758 TLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA- 833 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-
Confidence 888777764 5567777888888888888888888888888765 5677788888888888888 77888888877653
Q ss_pred CcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCC
Q 015811 329 KPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNS 394 (400)
Q Consensus 329 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (400)
+-+...+..+...+...|++++|.+.++++.+.+.. +..++..+..+++..|++++|...++.+.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 225556777788888999999999999999987643 78889999999999999999998887653
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.6e-26 Score=220.26 Aligned_cols=366 Identities=11% Similarity=0.044 Sum_probs=189.0
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
+++.+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 334444445555555555555555555544432 2233444444444555555555555555554432 22344444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
..+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++|..+++.+.... +.+...|..+..++.
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-------PDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 55555555555555555554433 2334444445555555555555555555554432 334455555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811 169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR 248 (400)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 248 (400)
..|++++|...|+.+.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|..
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555432 2234445555555555555555555555555442 2234455555555555555555555
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811 249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI 328 (400)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 328 (400)
+++.+.+.. +.+...+..+...+...|++++|...++.+...+ |+..++..++.++...|++++|...++++.+..
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~- 766 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH- 766 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 555555543 3344555555555556666666666666655543 333445555555666666666666666555442
Q ss_pred CcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhC
Q 015811 329 KPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKG 392 (400)
Q Consensus 329 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 392 (400)
+.+...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|+ .+|...++.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 2244555555556666666666666666665543 2344555566666666666 555555443
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2.8e-24 Score=187.08 Aligned_cols=313 Identities=14% Similarity=0.050 Sum_probs=249.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhc
Q 015811 53 INCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPN---VITYNTLINGLCRT 129 (400)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 129 (400)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445567889999999999999875 33667888888999999999999999998887532111 24577788889999
Q ss_pred CChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhc
Q 015811 130 GHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV----VTYTSLIHGFCHA 205 (400)
Q Consensus 130 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 205 (400)
|++++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.
T Consensus 121 g~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred CCHHHHHHHHHHHHcCC-------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999998754 456788889999999999999999999998876433221 2345677778889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHH
Q 015811 206 NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELF 285 (400)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 285 (400)
|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...+
T Consensus 194 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 194 GDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998764 33456777788899999999999999999987643333466788899999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc---cchHHHHHHHHHHHhhCC
Q 015811 286 VSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE---IRQAERALKLFVEMQGND 362 (400)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 362 (400)
+++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.++++|.+.+
T Consensus 273 ~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9998864 56666788999999999999999999998876 6888889888877664 568999999999999888
Q ss_pred CCCChhhHHHHHHHhhcCCcch
Q 015811 363 VAADTCTYRTFIDGLCVRPQVR 384 (400)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~g~~~ 384 (400)
+.|++. .+|.++|-..
T Consensus 349 ~~~~p~------~~c~~cg~~~ 364 (389)
T PRK11788 349 LKRKPR------YRCRNCGFTA 364 (389)
T ss_pred HhCCCC------EECCCCCCCC
Confidence 777776 2355555443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.6e-23 Score=182.33 Aligned_cols=308 Identities=14% Similarity=0.056 Sum_probs=254.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc---HHHHHHHHHH
Q 015811 14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN---VVTFTSLIKG 90 (400)
Q Consensus 14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 90 (400)
.......+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3344556678899999999999999875 45677899999999999999999999999988642222 3567888999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC---hhhHHHHHHHH
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN---TVTYSIIIDGL 167 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~ 167 (400)
|...|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+....+. ++. ...+..+...+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-----SLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHHH
Confidence 999999999999999998763 556788999999999999999999999999876521 111 22456677788
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811 168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS 247 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (400)
...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999998764 33466788888999999999999999999997643323456788899999999999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHhhhh
Q 015811 248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCK---NKEVEEALSLYNELP 324 (400)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~ 324 (400)
..++.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.
T Consensus 270 ~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 270 EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999999886 456666788999999999999999999999886 5888888888877764 568999999999999
Q ss_pred hCCCCcCHH
Q 015811 325 FKGIKPTVV 333 (400)
Q Consensus 325 ~~~~~p~~~ 333 (400)
+.++.|++.
T Consensus 346 ~~~~~~~p~ 354 (389)
T PRK11788 346 GEQLKRKPR 354 (389)
T ss_pred HHHHhCCCC
Confidence 877776665
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=8.9e-22 Score=179.54 Aligned_cols=335 Identities=10% Similarity=0.016 Sum_probs=274.8
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG 90 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (400)
..-...++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.|...++++.+.. +.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445567788889999999999999998765 4456677777788888999999999999999875 3367788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE 170 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (400)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------P~~~~a~~~~-~~l~~~ 190 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-------PPRGDMIATC-LSFLNK 190 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCCHHHHHHH-HHHHHc
Confidence 999999999999999999874 4567788889999999999999999999887654 2333444333 347889
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh----H
Q 015811 171 GFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN----A 246 (400)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a 246 (400)
|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++ |
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 9999999999998776433444555566778889999999999999999875 4466778888999999999986 8
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|...++++...
T Consensus 270 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 270 AEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998875 4567888999999999999999999999999875 456777888999999999999999999999876
Q ss_pred CCCcCHHH-HHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811 327 GIKPTVVT-YNTLFHGLFEIRQAERALKLFVEMQGN 361 (400)
Q Consensus 327 ~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (400)
.|+... +..+..++...|+.++|...|++..+.
T Consensus 348 --~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 --KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred --CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 455433 334566788999999999999998864
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=9e-21 Score=173.53 Aligned_cols=369 Identities=11% Similarity=-0.044 Sum_probs=285.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC 92 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
.+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++.. +.+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556778889999999999999998875 5788889999999999999999999999999875 336778888999999
Q ss_pred hcCCHHHHHHHHHHHHHcC-----------------------------CCCChhhHHHHHH-------------------
Q 015811 93 AESRIVEAAALFTKLKAFG-----------------------------CEPNVITYNTLIN------------------- 124 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~------------------- 124 (400)
..|++++|...|......+ .+++...+..+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999987654433211 0111111111100
Q ss_pred -----------HH------HhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 015811 125 -----------GL------CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN 187 (400)
Q Consensus 125 -----------~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 187 (400)
.. ...+++++|++.|+.....+.. .+.....+..+..++...|++++|+..+++..+..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~----~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 00 1125788899999988865410 13345678888889999999999999999998763
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHH
Q 015811 188 LNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNT 267 (400)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (400)
+.....|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 2235678888899999999999999999998874 4467788889999999999999999999999875 456777888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCH-----H-HHHHHHHH
Q 015811 268 LMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTV-----V-TYNTLFHG 341 (400)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~-~~~~l~~~ 341 (400)
+...+.+.|++++|...+++..+.. +.+...++.+..++...|++++|...|++........+. . .++.....
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 8999999999999999999998764 556888999999999999999999999998875221111 1 11222223
Q ss_pred HhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 342 LFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
+...|++++|.+++++...... .+...+..+...+...|++++|...++..
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3446999999999999887542 23446888999999999999998876653
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=6.5e-22 Score=166.30 Aligned_cols=367 Identities=16% Similarity=0.124 Sum_probs=267.9
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHH-HHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVV-TFT 85 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 85 (400)
.|.-..+|+.+...+-..|+++.|+.+|+.+.+.. +.....|..+..++...|+.+.|.+.|.+.++.+ |+.. ...
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s 188 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARS 188 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhc
Confidence 44556899999999999999999999999999875 4468899999999999999999999999998864 4433 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID 165 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (400)
.+...+...|+..+|...|.+.++.. +--..+|..|...+-.+|+...|+..|++..... +--...|..+..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------P~f~dAYiNLGn 260 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------PNFLDAYINLGN 260 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-------CcchHHHhhHHH
Confidence 45555566788888888888877663 2335678888888888888888888888887754 334567778888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811 166 GLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD 244 (400)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (400)
.|...+.++.|...|.+.... .| ....+..+...|...|..+-|+..+++.++.. +--...|+.+..++-..|++.
T Consensus 261 V~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 261 VYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchH
Confidence 888888888888888777654 33 34566667777777788888888887777653 223456777777777778888
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 245 NASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
+|.+.+....... +-.....+.|...|...|.++.|..+|....+.. +.-....+.|...|-++|++++|+..+++.+
T Consensus 338 ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 338 EAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 8888877777654 3345567777777777777777777777776653 2234556777777777777777777777776
Q ss_pred hCCCCcCH-HHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 325 FKGIKPTV-VTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT-CTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 325 ~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
.. .|+. ..++.+...|-..|+.+.|++.+.+.+.. .|.. ..++.|...|..+|+..+|+..++..
T Consensus 416 rI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 416 RI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred hc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 54 5553 35666777777777777777777776653 3432 35667777777777777776666543
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.1e-20 Score=172.41 Aligned_cols=358 Identities=11% Similarity=0.033 Sum_probs=284.9
Q ss_pred HHHccCChhHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH
Q 015811 20 CLAKNKHYDTVLSLFKRLNSI--GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI 97 (400)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (400)
.+.++.+++..--+|+...+. .-..+..-...++..+.+.|++++|..+++..+...+. +...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCH
Confidence 345667777666666554332 11123445566778889999999999999999987544 555666677888889999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHH
Q 015811 98 VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAK 177 (400)
Q Consensus 98 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 177 (400)
++|...++++.+.. +.+...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++|.
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999875 5567788889999999999999999999998864 556788889999999999999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 015811 178 ELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD 257 (400)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 257 (400)
..++.+...... +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++.+.+..
T Consensus 165 ~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 165 SLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999988765422 33333333 3478899999999999998876433444455556778899999999999999999875
Q ss_pred CCCcHHHHHHHHHHHHcCCChHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHH
Q 015811 258 VRPNAFTYNTLMDGFCLTGKINR----VKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333 (400)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 333 (400)
+.+...+..+...+...|++++ |...++++.+.. +.+...+..+...+...|++++|...+++..+... .+..
T Consensus 243 -p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~ 319 (656)
T PRK15174 243 -LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPY 319 (656)
T ss_pred -CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH
Confidence 5567788889999999999986 899999998875 55788899999999999999999999999988632 2456
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhh-HHHHHHHhhcCCcchhhHhhhhCC
Q 015811 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCT-YRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
.+..+..++...|++++|+..++++.+. .|+... +..+..++...|++++|...++..
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777888999999999999999999874 344433 444567889999999998887764
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=3e-20 Score=180.95 Aligned_cols=365 Identities=12% Similarity=0.033 Sum_probs=217.1
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc-HH----------H--H
Q 015811 18 LGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN-VV----------T--F 84 (400)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----------~--~ 84 (400)
...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++.++...... .. . .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 334444555555555555555432 22445555555555555555555555555554322110 00 0 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccc-----------
Q 015811 85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF----------- 153 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------- 153 (400)
......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.+..+......
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 112334444555555555555555442 22333444444555555555555555555443332110000
Q ss_pred ------------------------cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 015811 154 ------------------------KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWN 209 (400)
Q Consensus 154 ------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (400)
......+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 0001123344556667777777777777776653 224455666677777777777
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHH--------------------------------------------HHHHHhcCCchh
Q 015811 210 EAKGLLIEMVDQGVQPNVVSSNVI--------------------------------------------MNELCKNGKMDN 245 (400)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~~~~~~ 245 (400)
+|...++++.+.. +.+...+..+ ...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 7777777766542 1122222222 233445555555
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811 246 ASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 325 (400)
|..+++. .+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..++..+...|++++|...++.+.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5555541 24456667778888999999999999999999875 55788899999999999999999999998876
Q ss_pred CCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCC--CC---ChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 326 KGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDV--AA---DTCTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 326 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
.. +.+...+..+..++...|++++|.++++++..... .| +...+..+...+...|++++|...++..
T Consensus 666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 52 22455666777888899999999999999886432 12 2235566678889999999998887655
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.3e-19 Score=164.36 Aligned_cols=341 Identities=15% Similarity=0.061 Sum_probs=264.7
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC-----------
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF----------- 77 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 77 (400)
|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|+..|..+...+.
T Consensus 158 p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
T TIGR00990 158 PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVE 236 (615)
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 456789999999999999999999999999875 45678999999999999999999876654432110
Q ss_pred ------------------CccHHHHHHH------------------------------HHHH------HhcCCHHHHHHH
Q 015811 78 ------------------APNVVTFTSL------------------------------IKGL------CAESRIVEAAAL 103 (400)
Q Consensus 78 ------------------~~~~~~~~~l------------------------------~~~~------~~~~~~~~a~~~ 103 (400)
+++...+..+ +... ...+++++|.+.
T Consensus 237 ~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~ 316 (615)
T TIGR00990 237 RLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARA 316 (615)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHH
Confidence 0000000000 0000 112578899999
Q ss_pred HHHHHHcC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHH
Q 015811 104 FTKLKAFG-C-EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFL 181 (400)
Q Consensus 104 ~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 181 (400)
|+...+.+ . +.....+..+...+...|++++|+..+++..... +.....|..+..++...|++++|...|+
T Consensus 317 ~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-------PRVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99998764 1 2345667888888999999999999999998864 4456788889999999999999999999
Q ss_pred HHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCc
Q 015811 182 QMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPN 261 (400)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 261 (400)
++.+.. +.+...+..+...+...|++++|...+++.++.. +.+...+..+..++.+.|++++|...++...+.. +.+
T Consensus 390 ~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~ 466 (615)
T TIGR00990 390 KALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEA 466 (615)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 998764 3457888899999999999999999999999874 3456677788889999999999999999998764 556
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHH
Q 015811 262 AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDF------SYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTY 335 (400)
Q Consensus 262 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 335 (400)
...++.+...+...|++++|...|++..+.....+.. .++..+..+...|++++|..++++...... .+...+
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~ 545 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAV 545 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHH
Confidence 7889999999999999999999999998764221111 122222334457999999999999887642 244578
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhhC
Q 015811 336 NTLFHGLFEIRQAERALKLFVEMQGN 361 (400)
Q Consensus 336 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (400)
..+...+...|++++|++.|++..+.
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88999999999999999999998764
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=2.1e-19 Score=175.06 Aligned_cols=382 Identities=9% Similarity=-0.004 Sum_probs=263.9
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.|.....+...+..+-.......|...+.........|... ......++...|++++|...|++.++.. +.+...+..
T Consensus 231 ~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~ 308 (1157)
T PRK11447 231 SDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGA 308 (1157)
T ss_pred ChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 44455666666777766667788888888876543234332 2344667788999999999999999875 337888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hh------------hHHHHHHHHHhcCChHHHHHHHHHHHcCCCccc---
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPN-VI------------TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIG--- 150 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 150 (400)
+..++.+.|++++|+..|++..+...... .. ........+.+.|++++|+..|+++....+...
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~ 388 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAV 388 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999987642111 11 112335678899999999999999988653210
Q ss_pred -----------------------ccc-cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------CChHhHHHH
Q 015811 151 -----------------------VVF-KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN--------PNVVTYTSL 198 (400)
Q Consensus 151 -----------------------~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l 198 (400)
... +.+...+..+...+ ..++.++|..+++.+...... .....+..+
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 467 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQ 467 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 000 11222333344444 345677777777654322100 012235556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh
Q 015811 199 IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI 278 (400)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 278 (400)
...+...|++++|...+++.++.. +.+...+..+...|.+.|++++|...++.+.+.. +.+...+..+...+...++.
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCH
Confidence 777888999999999999999874 3356677888999999999999999999988754 33343333333334444555
Q ss_pred HHHHHHHHHHHhc---------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015811 279 NRVKELFVSMESM---------------------------------------GCKHDDFSYNILINGYCKNKEVEEALSL 319 (400)
Q Consensus 279 ~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 319 (400)
++|...++.+... ..+.+...+..+...+.+.|++++|+..
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444332110 1244556677788889999999999999
Q ss_pred HhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCCC
Q 015811 320 YNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSG 395 (400)
Q Consensus 320 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (400)
|+++.+.. +.+...+..+...+...|++++|++.++...+.. +.+...+..+..++...|++++|...++.+..
T Consensus 626 y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 626 YQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99988763 2367788888899999999999999999877642 12445566777888899999999888877643
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-20 Score=157.88 Aligned_cols=349 Identities=15% Similarity=0.119 Sum_probs=294.3
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLY-TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
.|..+.+|..+..++...|+.+.|.+.|.+.++.+ |+.. ....+...+...|++++|...|.+.++... --...|.
T Consensus 146 ~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiaws 222 (966)
T KOG4626|consen 146 KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWS 222 (966)
T ss_pred CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeeh
Confidence 45678999999999999999999999999998864 5544 344556666779999999999999988642 2456789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID 165 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (400)
.|.-.+..+|+...|++.|++..+.. +--...|..|...|...+.++.|+..+.+..... +.....+..+..
T Consensus 223 nLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-------pn~A~a~gNla~ 294 (966)
T KOG4626|consen 223 NLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-------PNHAVAHGNLAC 294 (966)
T ss_pred hcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-------CcchhhccceEE
Confidence 99999999999999999999999774 3346789999999999999999999999988764 455678888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811 166 GLCKEGFVDKAKELFLQMKYENLNPN-VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD 244 (400)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (400)
.|...|..+-|+..|++.++. .|+ ...|+.|..++-..|+..+|...+.+.+... +......+.|..+|...|.++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccch
Confidence 999999999999999999876 344 5789999999999999999999999998863 345677889999999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811 245 NASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD-DFSYNILINGYCKNKEVEEALSLYNEL 323 (400)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 323 (400)
.|..+|....+.. +--....+.|...|-++|++++|...+++..+. .|+ ...|+.+...|-..|+.+.|.+.+.+.
T Consensus 372 ~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 372 EATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 9999999998853 333567899999999999999999999999986 454 678999999999999999999999999
Q ss_pred hhCCCCcC-HHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChh-hHHHHHHH
Q 015811 324 PFKGIKPT-VVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTC-TYRTFIDG 376 (400)
Q Consensus 324 ~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 376 (400)
+.. .|. ...++.|...|-..|+..+|+.-++..++ ++||.. .+-.++.+
T Consensus 449 I~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 449 IQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred Hhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 875 454 35788899999999999999999999887 556553 34444443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2.4e-18 Score=160.55 Aligned_cols=365 Identities=10% Similarity=-0.017 Sum_probs=213.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
.-.+.+....|+.++|++++.+..... +.+...+..+..++...|++++|.++|++.++.. +.+...+..+..++...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 333444444445555554444444311 2233344444444444555555555555444432 11333344444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCCh-
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFV- 173 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 173 (400)
|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.... |.+...+..+..++...+..
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCChH
Confidence 55555555554444432 22223 4444444444455555555554444432 22222323333333333332
Q ss_pred ---------------------------------------------HHHHHHHHHHHHc-CCCCChH-hHH----HHHHHH
Q 015811 174 ---------------------------------------------DKAKELFLQMKYE-NLNPNVV-TYT----SLIHGF 202 (400)
Q Consensus 174 ---------------------------------------------~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~ 202 (400)
++|++.++.+.+. ...|+.. .+. ..+..+
T Consensus 168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 4455555565543 1122221 111 113345
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCC---cHHHHHHHHHHHHcCCCh
Q 015811 203 CHANDWNEAKGLLIEMVDQGVQ-PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRP---NAFTYNTLMDGFCLTGKI 278 (400)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 278 (400)
...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6778999999999998877522 222 22335678899999999999999887653111 134456667778899999
Q ss_pred HHHHHHHHHHHhcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc
Q 015811 279 NRVKELFVSMESMGC-----------KHD---DFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE 344 (400)
Q Consensus 279 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 344 (400)
++|...++.+.+... .|+ ...+..+...+...|++++|+.+++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999998876531 122 2345567778889999999999999988763 3356777888888889
Q ss_pred cchHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHhhcCCcchhhHhhhhCCC
Q 015811 345 IRQAERALKLFVEMQGNDVAAD-TCTYRTFIDGLCVRPQVRFTYARRKGNS 394 (400)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (400)
.|++++|++.+++..+. .|+ ...+......+...|++++|...++.+.
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999998874 354 4556677778889999999988776653
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.1e-17 Score=156.16 Aligned_cols=356 Identities=9% Similarity=0.010 Sum_probs=268.5
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.|.+..++..+...+...|++++|.++|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+.. +..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~ 121 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLA 121 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHH
Confidence 45566679999999999999999999999988764 5567788888899999999999999999999874 33566 888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH-------------------------
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKE------------------------- 141 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------------- 141 (400)
+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|+..++.
T Consensus 122 la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 122 LAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 8999999999999999999999874 34555566667777666776666655543
Q ss_pred ---------------------HHcCCCcccccccCChh-hHH----HHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHh
Q 015811 142 ---------------------MTNGNGEIGVVFKPNTV-TYS----IIIDGLCKEGFVDKAKELFLQMKYENLN-PNVVT 194 (400)
Q Consensus 142 ---------------------~~~~~~~~~~~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 194 (400)
+..... ..|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. .
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~-----~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a 274 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWH-----DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-A 274 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcc-----cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-H
Confidence 222100 012111 111 1133456779999999999999887532 322 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHhcCCchhHHHHHHHHHhCCC-----------CC
Q 015811 195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQP---NVVSSNVIMNELCKNGKMDNASRLLDLMVQCDV-----------RP 260 (400)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~ 260 (400)
...+...+...|++++|+..++.+.+..... .......+..++...|++++|...++.+.+... .|
T Consensus 275 ~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p 354 (765)
T PRK10049 275 QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIP 354 (765)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCC
Confidence 2335778999999999999999988653111 123455666788999999999999999987531 12
Q ss_pred c---HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC-HHHHH
Q 015811 261 N---AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT-VVTYN 336 (400)
Q Consensus 261 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~ 336 (400)
+ ...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|+..+++.... .|+ ...+.
T Consensus 355 ~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~ 431 (765)
T PRK10049 355 NDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEV 431 (765)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHH
Confidence 2 2345567778889999999999999998875 667889999999999999999999999999886 455 55666
Q ss_pred HHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 015811 337 TLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGL 377 (400)
Q Consensus 337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (400)
.....+...|++++|..+++++++ ..|+......+-+.+
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 667788999999999999999997 356666555555544
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=1.2e-17 Score=134.86 Aligned_cols=383 Identities=10% Similarity=0.120 Sum_probs=286.3
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.|.+..+|..+|.++++-...+.|.++|++......+.+..+||.+|.+-+-..+ .+++.+|.+....||..+||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 4677899999999999999999999999999887778899999999987654433 789999999999999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHHHcC--CCcccccccCChhh
Q 015811 87 LIKGLCAESRIVE----AAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIV-ALNLFKEMTNG--NGEIGVVFKPNTVT 159 (400)
Q Consensus 87 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--~~~~~~~~~~~~~~ 159 (400)
++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++.+. |.+..+..+.+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 46788999999999999999999999999887744 55555555432 22222223445567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYEN----LNPNV---VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNV 232 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 232 (400)
|...+..|.+..+.+-|.++...+.... +.|+. .-|..+....++....+.....++.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7788899999999999998877665321 22332 2355677778888899999999999998878889999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCC-Ch-------------HHHHHHHH-------HHHhc
Q 015811 233 IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTG-KI-------------NRVKELFV-------SMESM 291 (400)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-------------~~a~~~~~-------~~~~~ 291 (400)
++++....|.++-.-+++..++..|.........-++..+++.. .+ +-|..+++ ++.+
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~- 517 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA- 517 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence 99999999999999999988887764444444444444444332 11 11112222 2222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC----CCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCCh
Q 015811 292 GCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG----IKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT 367 (400)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (400)
........+.++-.+.+.|..++|.+++.-+.+.+ ..|.......++....+.++...|...++-|...+...-.
T Consensus 518 -~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 518 -QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred -ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 24556677888888999999999999999886543 2344444556677778889999999999999887755444
Q ss_pred hhHHHHHHHhhcCCcchhhHhhhhCCCC
Q 015811 368 CTYRTFIDGLCVRPQVRFTYARRKGNSG 395 (400)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (400)
..-+.+...|.-.....+++.-++++.+
T Consensus 597 ~La~RI~e~f~iNqeq~~~ls~l~~L~~ 624 (625)
T KOG4422|consen 597 GLAQRIMEDFAINQEQKEALSNLTALTS 624 (625)
T ss_pred HHHHHHHHhcCcCHHHHHHHhhhhhhcC
Confidence 4556677777766666677776666544
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=4.5e-16 Score=143.04 Aligned_cols=370 Identities=11% Similarity=0.015 Sum_probs=239.1
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL--YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
.+--.-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+..
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ 110 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAAR 110 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHH
Confidence 333344445678889999999999888764 442 233 77777888899999988888887321 223333444466
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
.+...|++++|.++|+++.+.. +.++..+..++..+...++.++|++.++++.... |+...+..++..+..
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------p~~~~~l~layL~~~ 181 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--------PTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------cchHHHHHHHHHHHh
Confidence 7888899999999999988875 4456667777788888888888988888887753 444555444444444
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH------------------------------------
Q 015811 170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG------------------------------------ 213 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------------------------------------ 213 (400)
.++..+|++.++++.+.. +-+...+..+..++.+.|-...|.+
T Consensus 182 ~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 182 TDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred cchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 566656888888887763 2244444555555444443322222
Q ss_pred ------------HHHHHHHC-CCCCCc-ccH----HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC
Q 015811 214 ------------LLIEMVDQ-GVQPNV-VSS----NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT 275 (400)
Q Consensus 214 ------------~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (400)
-++.+... +..|.. ..| .-.+-++...|+..++++.++.+...+.+....+-.++..+|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 22222221 111211 111 123446667778888888888887776555556777788888888
Q ss_pred CChHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC-------------CCcCHHH-HH
Q 015811 276 GKINRVKELFVSMESMG-----CKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG-------------IKPTVVT-YN 336 (400)
Q Consensus 276 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~p~~~~-~~ 336 (400)
+++++|..+++.+.... .+++......|.-+|...+++++|..+++.+.+.- ..||-.. +.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 88888888888876532 12233334667778888888888888888877631 1122222 23
Q ss_pred HHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCCCC
Q 015811 337 TLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGN 396 (400)
Q Consensus 337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (400)
.++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|...+|.....
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 34556777888888888888876542 336667777777888888888887777765443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.1e-15 Score=140.54 Aligned_cols=364 Identities=11% Similarity=0.033 Sum_probs=252.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES 95 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (400)
.++..+...|+.++|+..+++..... ..+......+...+...|++++|.++|+++.+..+. +...+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC
Confidence 67777777788888888888877211 122333333355777778888888888888877533 5666667777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHH
Q 015811 96 RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDK 175 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (400)
+.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. |.+...+..+..++.+.|-...
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-------P~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-------PTSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHH
Confidence 888888888887765 4555555444444444555656888888887764 3344454554444444443333
Q ss_pred HHH------------------------------------------------HHHHHHHc-CCCCCh-HhH----HHHHHH
Q 015811 176 AKE------------------------------------------------LFLQMKYE-NLNPNV-VTY----TSLIHG 201 (400)
Q Consensus 176 a~~------------------------------------------------~~~~~~~~-~~~~~~-~~~----~~l~~~ 201 (400)
|.+ -++.+... +..|.. ..| .-.+-+
T Consensus 222 a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~a 301 (822)
T PRK14574 222 ALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGA 301 (822)
T ss_pred HHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Confidence 333 23333321 111221 112 233556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHcCC
Q 015811 202 FCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD-----VRPNAFTYNTLMDGFCLTG 276 (400)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 276 (400)
+...++..++++.++.+...+.+....+-..+..+|...+++++|..++..+.... .+++......|..++...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 67889999999999999988866566688889999999999999999999987653 1233444578889999999
Q ss_pred ChHHHHHHHHHHHhcCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811 277 KINRVKELFVSMESMGC-----------KHDD---FSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL 342 (400)
Q Consensus 277 ~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 342 (400)
++++|..+++.+.+... .||+ ..+..++..+...|++.+|++.++++.... +-|......+...+
T Consensus 382 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~ 460 (822)
T PRK14574 382 QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIY 460 (822)
T ss_pred cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999999987321 1221 233456777889999999999999998763 44888888889999
Q ss_pred hccchHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 343 FEIRQAERALKLFVEMQGNDVAA-DTCTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
...|.+.+|.+.++..... .| +..+......++...|++++|..+...+
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 461 LARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999777664 44 4556677888888999999997766443
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=4.9e-15 Score=130.58 Aligned_cols=362 Identities=12% Similarity=0.061 Sum_probs=279.1
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL 91 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
...-.....+...|++++|.+++.+..+.. +.+...|..|...|-+.|+.+++...+-.+...+ +-|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 333344445555699999999999999876 5688999999999999999999998877766654 33779999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChh----hHHHHHHHH
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTV----TYSIIIDGL 167 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~ 167 (400)
...|.+.+|.-.|.+.++.. +++...+-.-+..|-+.|+...|..-|.++.... .+.+.. ....+++.+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHH
Confidence 99999999999999999885 5666666677888999999999999999998865 122222 233456667
Q ss_pred HhcCChHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------------------
Q 015811 168 CKEGFVDKAKELFLQMKYE-NLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG------------------------ 222 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------ 222 (400)
...++-+.|.+.++..... +-..+...++.++..+.+...++.+......+....
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 7778889999988887763 223456778889999999999999998888776611
Q ss_pred ---CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC--CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCH
Q 015811 223 ---VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD--VRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDD 297 (400)
Q Consensus 223 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 297 (400)
..++..+ -.++-++......+....+.....+.. +.-+...|.-+..++...|++.+|..++..+.....-.+.
T Consensus 371 ~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 371 GKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 1112222 123334555566666666666666666 3345678889999999999999999999999887656678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc-CHHHHHHHHHHHhccchHHHHHHHHHHHh--------hCCCCCChh
Q 015811 298 FSYNILINGYCKNKEVEEALSLYNELPFKGIKP-TVVTYNTLFHGLFEIRQAERALKLFVEMQ--------GNDVAADTC 368 (400)
Q Consensus 298 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~ 368 (400)
..|-.+..+|...|.+++|...|+..+.. .| +...--.|...+.+.|+.++|.+.++.+. ..+..|+..
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 89999999999999999999999999876 33 34455566677889999999999999854 334666677
Q ss_pred hHHHHHHHhhcCCcchh
Q 015811 369 TYRTFIDGLCVRPQVRF 385 (400)
Q Consensus 369 ~~~~l~~~~~~~g~~~~ 385 (400)
........+...|+.++
T Consensus 528 i~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhhhHHH
Confidence 77777778888888775
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.2e-15 Score=135.30 Aligned_cols=374 Identities=10% Similarity=0.018 Sum_probs=247.8
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLF--PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTF 84 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 84 (400)
.|.|+.+.+.|...|.-.|++..++.+.+.+...... .-...|..+.+++-..|++++|...|.+..+....-....+
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 3467788888999999999999999988888764311 12456888888889999999999999888776322113344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811 85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG----HTIVALNLFKEMTNGNGEIGVVFKPNTVTY 160 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
.-+.+.+.+.|+.+.+...|+...+.. +-+..+...|...|+..+ ..+.|..++.+..... +.|...|
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------~~d~~a~ 417 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-------PVDSEAW 417 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------cccHHHH
Confidence 557788888999999988888888763 444556666666666554 4466666666666553 5566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH----HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCcc-----
Q 015811 161 SIIIDGLCKEGFVDKAKELFLQMK----YENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ---GVQPNVV----- 228 (400)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~----- 228 (400)
-.+...+....-+.. +.+|..+. ..+..+.....|.+...+...|++..|...|...... ...++..
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 666666554433333 55555443 2344455666777777777777777777777666543 1112221
Q ss_pred -cHHHHHHH---------------------------HHhc-------CCchhHHHHHHHHHhCC----------------
Q 015811 229 -SSNVIMNE---------------------------LCKN-------GKMDNASRLLDLMVQCD---------------- 257 (400)
Q Consensus 229 -~~~~l~~~---------------------------~~~~-------~~~~~a~~~~~~~~~~~---------------- 257 (400)
+-..+... |.+. +...+|...+....+.+
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 11111111 2221 33344444444333211
Q ss_pred -------------------CCCcHHHHHHHHHHHHc------------CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 015811 258 -------------------VRPNAFTYNTLMDGFCL------------TGKINRVKELFVSMESMGCKHDDFSYNILING 306 (400)
Q Consensus 258 -------------------~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (400)
..+|+.+.-+|...|.. .+..++|+++|.++.+.. +.|...-|-+.-+
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiV 655 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIV 655 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhh
Confidence 11233333444443321 134678888888888876 6678888889999
Q ss_pred HHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh-hCCCCCChhhHHHHHHHhhcCCcchh
Q 015811 307 YCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ-GNDVAADTCTYRTFIDGLCVRPQVRF 385 (400)
Q Consensus 307 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (400)
++..|++.+|..+|.+.++.... ...+|-.+.++|..+|++..|+++|+... +..-.-+..+...|.+++...|.+.+
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999886432 45678889999999999999999999865 44445577788999999999999999
Q ss_pred hHhhhh
Q 015811 386 TYARRK 391 (400)
Q Consensus 386 a~~~~~ 391 (400)
|.+...
T Consensus 735 ak~~ll 740 (1018)
T KOG2002|consen 735 AKEALL 740 (1018)
T ss_pred HHHHHH
Confidence 866543
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2.2e-15 Score=122.03 Aligned_cols=347 Identities=16% Similarity=0.190 Sum_probs=255.0
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc--CChhh-HHHHHHHHHhccCCccHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKM--GQVSL-GFVIFGRILRSCFAPNVVTF 84 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--~~~~~-a~~~~~~~~~~~~~~~~~~~ 84 (400)
|..+.+=|.|+.. ..+|.+..+.-+|+.|.+.|++.+...-..+++.-+-. .++-- -++.|-.|.+.| ..+..+|
T Consensus 113 ~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW 190 (625)
T KOG4422|consen 113 PLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW 190 (625)
T ss_pred chhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc
Confidence 3455566666654 45788899999999999998887777666665543332 23222 233444444444 2244444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811 85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII 164 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 164 (400)
+.|+..+ ++.+.. +.+..++..+|.++++-...+.|.+++++..... .+.+..+||.+|
T Consensus 191 --------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI 249 (625)
T KOG4422|consen 191 --------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLI 249 (625)
T ss_pred --------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhh
Confidence 2354433 444433 6688899999999999999999999999988777 588999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 015811 165 DGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNE----AKGLLIEMVDQGVQPNVVSSNVIMNELCKN 240 (400)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (400)
.+-.-..+ .+++.+|......||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|+..+|..++..+++.
T Consensus 250 ~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 250 GASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 87644333 7889999999999999999999999999998765 567788899999999999999999999998
Q ss_pred CCchh-HHHHHHHHHhC----CC----CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC----CCCC---HHHHHHHH
Q 015811 241 GKMDN-ASRLLDLMVQC----DV----RPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG----CKHD---DFSYNILI 304 (400)
Q Consensus 241 ~~~~~-a~~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~ 304 (400)
+++.+ +..++.++... .+ +.|...|...+..|.+..+.+.|..+..-+.... +.|+ .+-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 88754 44444444332 12 2345667778888888899888888877664321 2222 23456677
Q ss_pred HHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCC
Q 015811 305 NGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRP 381 (400)
Q Consensus 305 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 381 (400)
.+.+.....+.-...|+.|.-.-+-|+..+...++++....+.++-..++|.+++..|..........++..+++..
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 77788888999999999999887788999999999999999999999999999998886666665556666666544
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=6e-15 Score=138.54 Aligned_cols=345 Identities=10% Similarity=-0.025 Sum_probs=182.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-c-CCccHHHHHHHHHHHHhcCC---HHH
Q 015811 25 KHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS-C-FAPNVVTFTSLIKGLCAESR---IVE 99 (400)
Q Consensus 25 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~ 99 (400)
+...++.+.+..|.+.. +-+......+.....+.|+.++|.++++..... + ..++......++..|.+.+. ..+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 45555555555555432 224555555555556666666666666666552 1 11223333345555555443 222
Q ss_pred HHHH----------------------HHHHHHc-CC-CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccc
Q 015811 100 AAAL----------------------FTKLKAF-GC-EP--NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF 153 (400)
Q Consensus 100 a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 153 (400)
+..+ .+..... +. ++ +...|..+..++.. ++.++|+..+.+....
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-------- 505 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-------- 505 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------
Confidence 2211 1111111 11 22 44555555555554 5666666666655543
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 015811 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVI 233 (400)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 233 (400)
.|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.. +.....+..+
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~L 582 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWL 582 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 233333333334445666777777666665443 2333444455556666667777777666666543 1122222222
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 015811 234 MNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEV 313 (400)
Q Consensus 234 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (400)
.......|++++|...++...+.. |+...+..+..++.+.|++++|...+++..+.. +.+...++.+..++...|++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 233334467777777776666543 345666666666666777777777776666654 44555666666666666777
Q ss_pred HHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHhhcCCcchhhHh
Q 015811 314 EEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT-CTYRTFIDGLCVRPQVRFTYA 388 (400)
Q Consensus 314 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~ 388 (400)
++|+..+++..+... -+...+..+..++...|++++|+..+++..+. .|+. .+.........+..+++.+.+
T Consensus 660 eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 660 AQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 777776666665421 24455666666666667777777766666653 2332 223333334444444554444
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=2.1e-14 Score=134.99 Aligned_cols=228 Identities=10% Similarity=-0.026 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811 82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS 161 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
..|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... +|+...+.
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~~~a~~ 546 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--------DMSNEDLL 546 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCcHHHH
Confidence 334444444433 4444444444444333 233222222222333444555555444444332 12222233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG 241 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (400)
.+...+.+.|++++|...++...+.. +.+...+..+.......|++++|...+++..+.. |+...+..+..++.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCC
Confidence 33444444455555555444444332 1111112122222223344555555554444432 23344444444444455
Q ss_pred CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811 242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYN 321 (400)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 321 (400)
++++|...++...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...++
T Consensus 624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555554444443 2333444444444444455555555554444432 2334444444444445555555555554
Q ss_pred hhhh
Q 015811 322 ELPF 325 (400)
Q Consensus 322 ~~~~ 325 (400)
+..+
T Consensus 702 ~Al~ 705 (987)
T PRK09782 702 LVID 705 (987)
T ss_pred HHHh
Confidence 4443
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=4.2e-18 Score=140.65 Aligned_cols=262 Identities=14% Similarity=0.101 Sum_probs=98.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45777778888888888885544332 2335555666666667778888888888888776533 55566666666 677
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD 174 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (400)
+++++|.+++....+. .+++..+..++..+...++++++.++++.+..... .+.+...|..+...+.+.|+++
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHH
Confidence 8888888877766554 35566667777777888888888888887664332 3456677777778888888888
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 175 KAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
+|++.+++..+.. +.|......++..+...|+.+++..++....+.. +.++..+..+..+|...|+.++|..+++...
T Consensus 164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 8888888887763 2246667777777888888888777777776653 4566667777788888888888888888877
Q ss_pred hCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811 255 QCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
+.. +.|+.....+..++...|+.++|.++..++.
T Consensus 242 ~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHS-TT-HHHHHHHHHHHT----------------
T ss_pred ccc-ccccccccccccccccccccccccccccccc
Confidence 754 5577777777888888888888887776654
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=8.4e-15 Score=127.22 Aligned_cols=289 Identities=8% Similarity=-0.042 Sum_probs=212.8
Q ss_pred HhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCChHH
Q 015811 57 CKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVI--TYNTLINGLCRTGHTIV 134 (400)
Q Consensus 57 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 134 (400)
...|+++.|.+.+.+..+.... ....+-....++...|+.+.|.+.+.+..+. .|+.. ........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 4689999999999888776422 2333445567788889999999999998765 34543 33445788888999999
Q ss_pred HHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH-HHHHHH---HhcCCHHH
Q 015811 135 ALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYT-SLIHGF---CHANDWNE 210 (400)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~ 210 (400)
|...++.+.+.. |-+......+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.
T Consensus 172 Al~~l~~l~~~~-------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 172 ARHGVDKLLEMA-------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999875 557778889999999999999999999999988654 333232 111221 23333344
Q ss_pred HHHHHHHHHHCCC---CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHH--H-HHHHHHHHcCCChHHHHHH
Q 015811 211 AKGLLIEMVDQGV---QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFT--Y-NTLMDGFCLTGKINRVKEL 284 (400)
Q Consensus 211 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~ 284 (400)
..+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. |+... + ..........++.+.+.+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 4445555554421 1367788888899999999999999999998864 33321 1 1122223445788888999
Q ss_pred HHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 285 FVSMESMGCKHDD--FSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 285 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
++...+.. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 322 ~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 322 IEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88887764 4455 66778999999999999999999954443347899889999999999999999999999864
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=7.9e-15 Score=126.69 Aligned_cols=284 Identities=11% Similarity=0.033 Sum_probs=198.8
Q ss_pred cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCChHHHH
Q 015811 59 MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYN--TLINGLCRTGHTIVAL 136 (400)
Q Consensus 59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 136 (400)
.|+++.|.+.+....+....| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 588888887777765542121 222333345557888888888888888765 45554333 3356777888888888
Q ss_pred HHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HhHHHHHHHHHhcCCHH
Q 015811 137 NLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV-------VTYTSLIHGFCHANDWN 209 (400)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~ 209 (400)
..++++.+.. |-++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+
T Consensus 174 ~~l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 174 HGVDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred HHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 8888888765 556777888888888888999888888888877544222 12223333333444455
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811 210 EAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
...++++.+.+. .+.++.....+...+...|+.++|.++++...+. +++.... ++.+....++.+++.+..+...
T Consensus 247 ~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 247 GLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHH
Confidence 555555555332 2446667777888888888888888888888773 4454322 2333345588888888888887
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 290 SMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 290 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
+.. +.|+..+..+...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++-..
T Consensus 322 k~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 322 KQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 764 556677788888888888888888888888876 68888888888888888888888888887653
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=1.5e-14 Score=124.92 Aligned_cols=284 Identities=13% Similarity=0.111 Sum_probs=221.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH--HHHHHHHhcCCHHHH
Q 015811 24 NKHYDTVLSLFKRLNSIGLFPDLYT-YSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT--SLIKGLCAESRIVEA 100 (400)
Q Consensus 24 ~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 100 (400)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 23333 333345558899999999999999886 44543332 446788899999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh------hhHHHHHHHHHhcCChH
Q 015811 101 AALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT------VTYSIIIDGLCKEGFVD 174 (400)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 174 (400)
...++++.+.. +-++.....+...|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-----~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-----GDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999886 55778888999999999999999999999998762 11111 13333444444555666
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 175 KAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
...++++.+.+. .+.+......+...+...|+.++|...+++..+. +++... .++.+....++.+++.+..+...
T Consensus 247 ~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 247 GLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHH
Confidence 777777776543 3457788889999999999999999999999884 445422 23344456699999999999998
Q ss_pred hCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811 255 QCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 325 (400)
+.. +-|+..+..+...+...+++++|.+.|+...+. .|+...+..+..++.+.|+.++|..++++...
T Consensus 322 k~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 322 KQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 875 567778889999999999999999999999986 68999999999999999999999999998754
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=9.6e-15 Score=126.87 Aligned_cols=285 Identities=12% Similarity=0.002 Sum_probs=207.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChh--hHHHHHHHHHh
Q 015811 93 AESRIVEAAALFTKLKAFGCEPNVI-TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTV--TYSIIIDGLCK 169 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 169 (400)
..|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.|.+.+.+..+.. |+.. .-......+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--------GNDNILVEIARTRILLA 165 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CcCchHHHHHHHHHHHH
Confidence 689999999999888776 34443 33445677788899999999999987643 4433 33445788889
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH---HhcCCchhH
Q 015811 170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNEL---CKNGKMDNA 246 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a 246 (400)
.|+++.|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.++.++......-..++ ...+..+.+
T Consensus 166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999875 3366788889999999999999999999999886543322211111222 333333334
Q ss_pred HHHHHHHHhCCC---CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHH
Q 015811 247 SRLLDLMVQCDV---RPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFS---YNILINGYCKNKEVEEALSLY 320 (400)
Q Consensus 247 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~ 320 (400)
...+..+.+... +.+...+..++..+...|+.++|...+++..+.. |+... ...........++.+.+...+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 445555544321 2377888889999999999999999999998864 33331 122222234457888899999
Q ss_pred hhhhhCCCCcC-H--HHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhC
Q 015811 321 NELPFKGIKPT-V--VTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKG 392 (400)
Q Consensus 321 ~~~~~~~~~p~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 392 (400)
++..+. .|+ + ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|...++.
T Consensus 323 e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 323 EKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888766 333 3 556688889999999999999999655444678998899999999999999999877764
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=7e-18 Score=139.34 Aligned_cols=257 Identities=14% Similarity=0.122 Sum_probs=61.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcc-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015811 53 INCFCKMGQVSLGFVIFGRILRSC-FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH 131 (400)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 131 (400)
...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+ +-++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444555555555555554333222 12233344444444444555555555555555443 1233344444444 34555
Q ss_pred hHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCCHHH
Q 015811 132 TIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN-LNPNVVTYTSLIHGFCHANDWNE 210 (400)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 210 (400)
+++|.+++....+. .+++..+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++
T Consensus 93 ~~~A~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 93 PEEALKLAEKAYER--------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred cccccccccccccc--------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55555555443332 1233444444455555555555555555544321 12333444444445555555555
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811 211 AKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMES 290 (400)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (400)
|+..+++..+.. |.|......++..+...|+.+++..++....+.. +.++..+..+..++...|+.++|...+++..+
T Consensus 165 A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 165 ALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 555555555442 2233444444444555555555444444444332 23333444444555555555555555555444
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 015811 291 MGCKHDDFSYNILINGYCKNKEVEEALSLYNE 322 (400)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 322 (400)
.. +.|+.....+..++...|+.++|..+.++
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT--------------
T ss_pred cc-ccccccccccccccccccccccccccccc
Confidence 32 33444444445555555555555544444
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=5.4e-15 Score=120.88 Aligned_cols=364 Identities=13% Similarity=0.110 Sum_probs=244.6
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC------------c
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA------------P 79 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~ 79 (400)
...+.+...+.+.|+++.|+..|+...+. .|+..+-..++-++...|+.++..+.|.+|+..... |
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 34555566678889999999999988775 478776666666777789999999999998864322 2
Q ss_pred cHHHHHHHHH-----HHHhcC--CHHHHHHHHHHHHHcCCCCChhh-------------H--------HHHHHHHHhcCC
Q 015811 80 NVVTFTSLIK-----GLCAES--RIVEAAALFTKLKAFGCEPNVIT-------------Y--------NTLINGLCRTGH 131 (400)
Q Consensus 80 ~~~~~~~l~~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-------------~--------~~l~~~~~~~~~ 131 (400)
+....+..+. -.-+.+ +.++++-.-.+++.--+.|+-.. + ..-...+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 3333332221 111111 11222221122221111222110 0 011224678899
Q ss_pred hHHHHHHHHHHHcCCCccccc-------------------------ccCChhhHHHHH-----HHHHhcCChHHHHHHHH
Q 015811 132 TIVALNLFKEMTNGNGEIGVV-------------------------FKPNTVTYSIII-----DGLCKEGFVDKAKELFL 181 (400)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~ 181 (400)
++.|+++++-+.......... +..+..-||.-. ......|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 999999988877655311000 000111111111 11223688999999999
Q ss_pred HHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCc
Q 015811 182 QMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPN 261 (400)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 261 (400)
+.....-.-....|+ +.-.+-..|+.++|++.|-++... +..+..++..+...|....++..|++++...... ++.|
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d 591 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND 591 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence 988653222222333 233456779999999999887654 2336677888888999999999999999887665 5778
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHH
Q 015811 262 AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHG 341 (400)
Q Consensus 262 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 341 (400)
+..+..|...|-+.|+-..|.+.+-.--+. .+.+..+...|...|....-+++|+.+|++..- ++|+..-|..++..
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHH
Confidence 999999999999999999998877655444 367888888899999999999999999998764 48999999998876
Q ss_pred H-hccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcch
Q 015811 342 L-FEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVR 384 (400)
Q Consensus 342 ~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 384 (400)
| .+.|++.+|..++++.... ++-|...+..|++.+...|-.+
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 5 5589999999999998754 5668888888999888877543
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.2e-13 Score=107.98 Aligned_cols=287 Identities=13% Similarity=0.114 Sum_probs=222.8
Q ss_pred cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCCh
Q 015811 59 MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV------ITYNTLINGLCRTGHT 132 (400)
Q Consensus 59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 132 (400)
+++.++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..+.|+++.+.+.+. ||. .+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 567899999999999864 335666778889999999999999999998864 443 2345567778889999
Q ss_pred HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcCCH
Q 015811 133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV----VTYTSLIHGFCHANDW 208 (400)
Q Consensus 133 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 208 (400)
+.|+.+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.
T Consensus 124 DRAE~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 124 DRAEDIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred hHHHHHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 99999999998765 344567788999999999999999999988877544432 3456666677777889
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015811 209 NEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSM 288 (400)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (400)
+.|..++.+..+.+ +.+...--.+.......|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+.++
T Consensus 197 d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 197 DRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998875 33455555677888999999999999999999876666778889999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc---cchHHHHHHHHHHHhhC
Q 015811 289 ESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE---IRQAERALKLFVEMQGN 361 (400)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 361 (400)
.+.. +....-..+.+.-......+.|..++.+-... +|+...+..++..-.. .|...+.+.++++|...
T Consensus 276 ~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 276 METN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8864 34444455555555566677777777666655 7999999999886543 45577778888888743
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1e-14 Score=119.32 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=164.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH------------------------------------HHHHhcCC
Q 015811 164 IDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLI------------------------------------HGFCHAND 207 (400)
Q Consensus 164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~------------------------------------~~~~~~~~ 207 (400)
..-+.+.|+++.|.+++.-..+..-..-...-+.|- .....+|+
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc
Confidence 446789999999999988776542211111111110 00113467
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Q 015811 208 WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVS 287 (400)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 287 (400)
+++|.+.+++.+..... ....+..+.-.+-..|++++|++.|-++... +..+..++..+...|....+...|.+++.+
T Consensus 506 ~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 88888888888765322 1222222334567789999999998776543 234667778888889889999999999988
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCCh
Q 015811 288 MESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT 367 (400)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (400)
.... ++.|+..++.|...|-+.|+-..|.+.+-+--.. ++-|..+...|...|....-+++++.+|++.-- +.|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 7765 4778999999999999999999999877655433 455788888899999999999999999998654 78999
Q ss_pred hhHHHHHHHh-hcCCcchhhHhhhhCC
Q 015811 368 CTYRTFIDGL-CVRPQVRFTYARRKGN 393 (400)
Q Consensus 368 ~~~~~l~~~~-~~~g~~~~a~~~~~~~ 393 (400)
.-|..++..| .++|+++.|+.+++.+
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999888755 4799999999999865
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=3.7e-13 Score=118.98 Aligned_cols=344 Identities=14% Similarity=0.120 Sum_probs=262.8
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.|.+..+|..|...|-+.|+.+++...+-.+.-.. +.|...|..+.....+.|.+++|.-.|.+.++.. +++...+--
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~e 246 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYE 246 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHH
Confidence 46788999999999999999999998776655444 5577999999999999999999999999999986 446666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVI----TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI 162 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
-...|-+.|+...|.+.|.++.....+.|.. .....++.+...++-+.|++.++....... -..+...++.
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~-----~~~~~ed~ni 321 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK-----DEASLEDLNI 321 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc-----ccccccHHHH
Confidence 7888999999999999999999874222222 223346667778888999999988877432 2456678889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 015811 163 IIDGLCKEGFVDKAKELFLQMKYEN---------------------------LNPNVVTYTSLIHGFCHANDWNEAKGLL 215 (400)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 215 (400)
++..+.+...++.+......+.... ..++... -.++-++.+.+..+....+.
T Consensus 322 ~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll 400 (895)
T KOG2076|consen 322 LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALL 400 (895)
T ss_pred HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHH
Confidence 9999999999999999888776521 1222222 12333445555555555566
Q ss_pred HHHHHCCC--CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 015811 216 IEMVDQGV--QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC 293 (400)
Q Consensus 216 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 293 (400)
..+.+..+ .-+...|..+..+|...|++++|..+|..+......-+...|-.+..+|...|.++.|...|+.+....
T Consensus 401 ~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~- 479 (895)
T KOG2076|consen 401 HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA- 479 (895)
T ss_pred HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 66666653 335567888999999999999999999999987656667899999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh--------CCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 294 KHDDFSYNILINGYCKNKEVEEALSLYNELPF--------KGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 294 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
+.+...-..|...+.+.|+.++|.++++.+.. .+..|+..........+...|+.++-+.....|+
T Consensus 480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 480 PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45566667788889999999999999998652 2344555555556667778888777555555544
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=4.7e-13 Score=107.86 Aligned_cols=293 Identities=11% Similarity=0.068 Sum_probs=211.5
Q ss_pred HHHHHHc--cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 17 LLGCLAK--NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 17 l~~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
+..++.+ .|+|.+|.++..+-.+.+ +.....|..-..+.-+.|+.+.+-.++.+..+....++....-+..+.....
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3444443 799999999999987776 4455667777888889999999999999999875566777888888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC-------hhhHHHHHHHH
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN-------TVTYSIIIDGL 167 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 167 (400)
|+...|..-++++.+.+ +..+........+|.+.|++.+...++..+.+.+. -.+ ..+|..+++-.
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~------l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL------LSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC------CChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886 66788889999999999999999999999998772 222 24566666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811 168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS 247 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (400)
...+..+.-...++..... ...++..-..++.-+.+.|+.++|.++..+..+++..|. . ...-.+.+-++.+.-.
T Consensus 240 ~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~ 314 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLI 314 (400)
T ss_pred hccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHH
Confidence 5555555555566655433 333555666677777777777777777777777654443 1 1122345566666666
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811 248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 325 (400)
+..+.-.+.. +.++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus 315 k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 315 KAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6665555443 344566777777777777777777777766665 56777777777777777777777777766553
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.3e-13 Score=106.46 Aligned_cols=294 Identities=16% Similarity=0.119 Sum_probs=223.3
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc---HHHHHHHHHHHHhcCCHHH
Q 015811 23 KNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN---VVTFTSLIKGLCAESRIVE 99 (400)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 99 (400)
-+.+.++|.++|-+|.+.. +.+..+..++.+.+.+.|..++|+.+.+.+.++.--+. ......|.+-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3678999999999999854 44667888999999999999999999999998621111 2344557778999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC-hhhHHHHHHHHHhcCChHHHHH
Q 015811 100 AAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN-TVTYSIIIDGLCKEGFVDKAKE 178 (400)
Q Consensus 100 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 178 (400)
|+++|..+.+.+ ..-......|+..|-...+|++|++.-+++...++.. .... ...|--+...+....+.+.|..
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---chhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999998765 4556778889999999999999999999888765210 0001 1334455556667789999999
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 015811 179 LFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDV 258 (400)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 258 (400)
++.+..+.+. ..+..--.+.+.....|+++.|.+.++.+.+++..--+.+...|..+|...|++++....+..+.+..
T Consensus 202 ~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~- 279 (389)
T COG2956 202 LLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN- 279 (389)
T ss_pred HHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 9999988742 24455556778888999999999999999998766566788889999999999999999999988864
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHhhhhhC
Q 015811 259 RPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN---KEVEEALSLYNELPFK 326 (400)
Q Consensus 259 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~ 326 (400)
+....-..+........-.+.|...+.+-... +|+...+..++...... |...+....++.|...
T Consensus 280 -~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 -TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33444444544444455566666666655554 69999999999887643 4466666777777643
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=7.7e-13 Score=106.65 Aligned_cols=286 Identities=11% Similarity=0.034 Sum_probs=203.4
Q ss_pred cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 015811 59 MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNL 138 (400)
Q Consensus 59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 138 (400)
.|++.+|.++..+-.+.+.. ....|..-..+.-..|+.+.+-+++.+..+..-.++....-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57888888888887776544 34455556677777888888888888887652244555666677777888888888888
Q ss_pred HHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HhHHHHHHHHHhcCCHHHH
Q 015811 139 FKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV-------VTYTSLIHGFCHANDWNEA 211 (400)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a 211 (400)
++++.... +.++.......++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-
T Consensus 176 v~~ll~~~-------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 176 VDQLLEMT-------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred HHHHHHhC-------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 88887765 566777888888888888888888888888887755443 3455555555555555554
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811 212 KGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESM 291 (400)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (400)
...+++.... .+-++..-..++.-+.+.|+.++|.++..+..+.+..|. ...+ -.+.+.++...-.+..+.-.+.
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHh
Confidence 4555554433 344566667777778888888888888888877765554 2222 2345666776666666665544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 292 GCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
. +.++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++...
T Consensus 324 h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 324 H-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred C-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3 445577788888888888888888888877665 67888888888888888888888888877653
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.6e-14 Score=121.38 Aligned_cols=282 Identities=12% Similarity=0.067 Sum_probs=144.6
Q ss_pred ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHH
Q 015811 61 QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGC--EPNVITYNTLINGLCRTGHTIVALNL 138 (400)
Q Consensus 61 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 138 (400)
+..+|...|+.+... +.-+..+...+.++|...+++++|.++|+.+.+... .-+...|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345555556553333 222334445555666666666666666666654410 0133444444433211 111222
Q ss_pred H-HHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHH
Q 015811 139 F-KEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLI 216 (400)
Q Consensus 139 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 216 (400)
+ +.+.+.. +..+.+|-.+..+|.-.++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+
T Consensus 409 Laq~Li~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 409 LAQDLIDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHHhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 2 2222222 344556666666666666666666666666553 22 44555555555555666666666666
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC
Q 015811 217 EMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD 296 (400)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 296 (400)
..+... +-+...|.-+...|.+.++++.|+-.|+++.+.+ +.+......+...+.+.|+.++|+++++++...+ +.|
T Consensus 480 ~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn 556 (638)
T KOG1126|consen 480 KALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKN 556 (638)
T ss_pred hhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCC
Confidence 554321 1122233334455666666666666666666554 3344555555555666666666666666665554 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC-HHHHHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811 297 DFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT-VVTYNTLFHGLFEIRQAERALKLFVEMQGN 361 (400)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (400)
+-.--.-+..+...+++++|+..++++.+. .|+ ...+..+...|.+.|+.+.|+..|--+.+.
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 333333444555556666666666666554 333 334444555666666666666666655543
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=5e-12 Score=108.24 Aligned_cols=360 Identities=8% Similarity=-0.031 Sum_probs=173.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC 92 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
+|..-...|.+.+-++-|+.+|...++.. +-+...|......--..|..+.-..++++....- +-....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 33344444444444444444444444321 2233344444443334444444444444444431 112333333334444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811 93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF 172 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (400)
..|+...|..++....+.. +-+...|..-+..-..+.+++.|..+|.+.... .|+...|..-+...--.++
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--------sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--------SGTERVWMKSANLERYLDN 666 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--------CCcchhhHHHhHHHHHhhh
Confidence 4455555555444444442 223344444444444444555555555444442 2344444444444444444
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHH
Q 015811 173 VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL 252 (400)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 252 (400)
.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++-....|-.+...--+.|.+-.|..+++.
T Consensus 667 ~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 667 VEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 55555555444433 1111233444444444444444444444333222 122233333344444444455555555555
Q ss_pred HHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCH
Q 015811 253 MVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTV 332 (400)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 332 (400)
..-.+ +.+...|-..|+.-.+.|+.+.|..++.+..+. ++.+...|..-|....+.++-......+++. .-|+
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dp 817 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDP 817 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCc
Confidence 44443 334445555555555555555555555544443 2334444444444444444433333332222 3366
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 333 VTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 333 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
+..-.+...+....++++|.+.|.+.++.+.. .-.+|.-+..-+.++|.-++-.++++..
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66667777788888899999999998875422 3457888888888899777777766665
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.5e-14 Score=120.25 Aligned_cols=284 Identities=14% Similarity=0.077 Sum_probs=174.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC--CccHHHHHHHHHHHHhcCCHHHHHHH
Q 015811 26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF--APNVVTFTSLIKGLCAESRIVEAAAL 103 (400)
Q Consensus 26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 103 (400)
+..+|+..|+.+... +.-+..+...+..+|...+++++|.++|+.+.+..+ .-+..+|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456677777774443 233345566667777777777777777777766421 12556666666543222 11222
Q ss_pred H-HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 015811 104 F-TKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ 182 (400)
Q Consensus 104 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (400)
+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+....++|.|...|+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 2 2222222 4456777777777777777777777777777654 33566777777777777777777777777
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH
Q 015811 183 MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA 262 (400)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 262 (400)
.+.... .+-..|--+...|.+.++++.|+-.|+++.+.+ +.+.+....+...+.+.|+.++|+.+++++...+ +.|+
T Consensus 481 Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~ 557 (638)
T KOG1126|consen 481 ALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNP 557 (638)
T ss_pred hhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCc
Confidence 664311 122333345566677777777777777776654 3345555566666777777777777777776655 3344
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
..--.-+..+...+++++|+..++++++.- +.+...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 443344455566677777777777776652 445556666777777777777777777666655
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=7.8e-13 Score=108.52 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 015811 157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNE 236 (400)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (400)
+.|+..+.+.|+-.++.++|...|+...+.+. .....|+.+..-|....+...|.+.++...+.. +.|-..|..+.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 34444455555555555556655655555431 133445555555555555555555555555543 3355555555555
Q ss_pred HHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015811 237 LCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEA 316 (400)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 316 (400)
|.-.+.+.-|+-.|++..+.. +-|+..|.+|..+|.+.++.++|++.|......| ..+...+..|...|-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 555555555555555555543 4455555555666655566666666665555544 22445555555555555555555
Q ss_pred HHHHhhhh
Q 015811 317 LSLYNELP 324 (400)
Q Consensus 317 ~~~~~~~~ 324 (400)
...+++-+
T Consensus 486 a~~yek~v 493 (559)
T KOG1155|consen 486 AQYYEKYV 493 (559)
T ss_pred HHHHHHHH
Confidence 55555443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.7e-12 Score=104.03 Aligned_cols=287 Identities=11% Similarity=0.033 Sum_probs=216.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc-CChhhHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK-PNTVTYSIIIDGL 167 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 167 (400)
.++....+.+++.+-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+ .. .|.++|+.++-+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP-----YRl~dmdlySN~LYv- 308 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP-----YRLDDMDLYSNVLYV- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----CcchhHHHHhHHHHH-
Confidence 44555566777777777777777665555555566666778899999999999988752 22 245666666533
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811 168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS 247 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (400)
+..+..- ..+.+-...-.+.-+.|...+.+-|.-.++.++|...|+..++.+ +.....|+.+..-|....+...|.
T Consensus 309 -~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 -KNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred -HhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 3222221 111111111012234677777888888899999999999999875 345678888899999999999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC
Q 015811 248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG 327 (400)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 327 (400)
+-++.+.+.. +.|-..|-.|.++|.-.+.+.=|+-.|++..... |.|+..|.+|..+|.+.++.++|+..|.+....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999987 7788999999999999999999999999999875 6789999999999999999999999999998765
Q ss_pred CCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh----CCCCCChh--hHHHHHHHhhcCCcchhhHh
Q 015811 328 IKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG----NDVAADTC--TYRTFIDGLCVRPQVRFTYA 388 (400)
Q Consensus 328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~--~~~~l~~~~~~~g~~~~a~~ 388 (400)
- .+...+..|...|-+.++.++|...|++.++ .|...+.. .-.-|..-+.+.+++++|..
T Consensus 463 d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 463 D-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred c-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 3 3668899999999999999999999988764 23332222 22235556778999999866
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=9.1e-11 Score=100.77 Aligned_cols=338 Identities=12% Similarity=0.005 Sum_probs=161.7
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHH----HhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRL----NSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NV 81 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 81 (400)
|.+..+|.+-...=-.+|+.+...+++.+- ...|+.-+...|..=...|-..|..-.+..+....+..|+.- -.
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 334444444443334444444444444332 223444444444444444444444444444444444333221 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811 82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS 161 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
.+|..-...|.+.+.++-|..+|...++.- +.+...|......=-..|..++...+|++....- +.....|-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-------pkae~lwl 588 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-------PKAEILWL 588 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------CcchhHHH
Confidence 234444444444444454555554444331 2233334333333333444555555555554432 33334444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG 241 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (400)
.....+-..|+...|..++..+.+... .+...|..-+..-..+.+++.|..+|.+.... .|+...|..-+...--.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 444445555666666666665555432 24455555555555556666666666555443 344555554444445555
Q ss_pred CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811 242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYN 321 (400)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 321 (400)
+.++|.+++++..+.- +.-...|..+.+.+-+.++.+.|...|..-.+. ++.....|-.+...=-+.|.+-.|..+++
T Consensus 666 ~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 5666666665555531 222344555555555555555555555444433 23334445555555555555666666666
Q ss_pred hhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 322 ELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 322 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
+.+-++. -+...|-..|+.-.+.|..+.|..+..+.+
T Consensus 744 rarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 744 RARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5554432 244555555555556666655555554443
No 48
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.2e-11 Score=110.57 Aligned_cols=355 Identities=12% Similarity=0.025 Sum_probs=236.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 27 YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTK 106 (400)
Q Consensus 27 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 106 (400)
++.|.+.|....+.. ++|.-.+..-.......+++..|+.+|...+..++.--+.....+..++.+.|+.+.|...|.+
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 588888888887654 4455444333334455678889999999877654322222233445677788899999999988
Q ss_pred HHHcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811 107 LKAFGCEPNVITYNTLINGLCR---TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQM 183 (400)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (400)
..+.. +.++.++..|.-.-.. ...+..+..++...-..+ +-++...+.|...|.-.|++..+..+...+
T Consensus 225 alqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-------~~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 225 ALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-------NENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-------CCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 88763 2223333332222222 234556777777766654 567788888888888899999999888888
Q ss_pred HHcCCC--CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCc
Q 015811 184 KYENLN--PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPN 261 (400)
Q Consensus 184 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 261 (400)
...... .-...|-.+.++|...|++++|..+|.+..+.........+.-+.+.+...|+++.+...|+.+.+.. +.+
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~ 375 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNN 375 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cch
Confidence 765311 12345778888888999999999988877765322113344557788889999999999998888764 455
Q ss_pred HHHHHHHHHHHHcCC----ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh----hCCCCcCHH
Q 015811 262 AFTYNTLMDGFCLTG----KINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP----FKGIKPTVV 333 (400)
Q Consensus 262 ~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~p~~~ 333 (400)
..+...|...|...+ ..+.|..++.+..+.. +.|...|-.+...+....-+.. +.++..+. ..+-.+.+.
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHH
Confidence 667777777776654 4567777777777654 5577777777777665544433 66666544 344457778
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhC---CCCCChh------hHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 334 TYNTLFHGLFEIRQAERALKLFVEMQGN---DVAADTC------TYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
..|.+.......|.+.+|...|...... ...+|.. +--.+...+-..++++.|.+.|+.+
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 8888888888889999999888887644 1223331 2223444555666777777777765
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.9e-11 Score=99.84 Aligned_cols=131 Identities=16% Similarity=0.181 Sum_probs=86.5
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
.+...|-..+..=.++..++.|..++++.... -|- ...|...+..--..|++..|.++|+...+. .|+...|.+.
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sf 180 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSF 180 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHH
Confidence 34455555566666666666666666666543 232 234455554445567777777777776664 6777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
++.=.+.+.++.|..++++..-. .|++.+|......=.+.|+...|..+|....+.
T Consensus 181 I~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 77777777777777777777654 577777777777777777777777777776653
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.5e-11 Score=101.75 Aligned_cols=369 Identities=14% Similarity=0.035 Sum_probs=241.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811 14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC 92 (400)
Q Consensus 14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
+.....-|.++|++++|++.|....+. .|+ +..|.....+|...|++++..+--...++.++. -+..+..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 455667788999999999999999886 577 788889999999999999988887777775321 2333444444555
Q ss_pred hcCCHHHHHH----------------------HHHH---------HHHcC--CCCChhhHHHHHHHHHh--------cC-
Q 015811 93 AESRIVEAAA----------------------LFTK---------LKAFG--CEPNVITYNTLINGLCR--------TG- 130 (400)
Q Consensus 93 ~~~~~~~a~~----------------------~~~~---------~~~~~--~~~~~~~~~~l~~~~~~--------~~- 130 (400)
..|++++|+. ++.+ +.+.+ +-|+.....+....+.. .+
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 5555555432 2211 11111 12333333333322211 00
Q ss_pred -------------------ChHHHHHHHHHHHcCCCcccccccCChh------hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811 131 -------------------HTIVALNLFKEMTNGNGEIGVVFKPNTV------TYSIIIDGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 131 -------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (400)
.+..|.+.+.+-..........-..|.. +...-...+.-.|+.-.+..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1111222221111100000000001111 111112223446888899999999887
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHH
Q 015811 186 ENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTY 265 (400)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 265 (400)
.... +...|-.+...|...++.++....|.+....+ +.++.+|..-.+.+.-.+++++|..=|++.+... +-+...|
T Consensus 355 l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred cCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 6433 23337777788899999999999999998876 4577788888888888999999999999998865 4456677
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC-----CCCcCHH--HHHHH
Q 015811 266 NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK-----GIKPTVV--TYNTL 338 (400)
Q Consensus 266 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~--~~~~l 338 (400)
..+..+..+.+.++++...|++..+. .|..+..|+.....+..+++++.|.+.|+..++. ++..+.. +...+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 77777778889999999999999876 3667888999999999999999999999988764 1111222 22222
Q ss_pred HHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811 339 FHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK 391 (400)
Q Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 391 (400)
+..- -.+++..|.+++++..+.+.+ ....+..|...-...|+.++|+++.+
T Consensus 511 l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 511 LVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred hhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2222 248899999999998875432 34468888888899999999987765
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=1.8e-12 Score=117.08 Aligned_cols=268 Identities=12% Similarity=0.026 Sum_probs=182.7
Q ss_pred CCCHHhHHHHHHHHHh-----cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH---------hcCCHHHHHHHHHHHH
Q 015811 43 FPDLYTYSILINCFCK-----MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC---------AESRIVEAAALFTKLK 108 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 108 (400)
..+...|...+.+... .++.++|.+.|++.++..+. +...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666655322 23467889999998887432 4555665555443 2345789999999998
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 015811 109 AFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL 188 (400)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (400)
+.+ +.+..++..+...+...|++++|...|++..+.+ |.+...+..+..++...|++++|...+++..+...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 875 4567778888888888999999999999988865 45667788888889999999999999999887642
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHH
Q 015811 189 NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTL 268 (400)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (400)
. +...+..++..+...|++++|...++++.....+.+...+..+..++...|+.++|...+..+.... +.+....+.+
T Consensus 404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l 481 (553)
T PRK12370 404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLL 481 (553)
T ss_pred C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHH
Confidence 2 2223334455566788899999999888765422244456777788889999999999998876642 2334445556
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 269 MDGFCLTGKINRVKELFVSMESMG-CKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 269 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
...|...| +.|...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 66667666 47777777665421 12222222 34445556776666655 777665
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=5.3e-12 Score=101.93 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=136.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35566677777777777777777777776653 2345666667777777777777777777777654 344556666777
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811 125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH 204 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (400)
.+...|++++|.+.+++...... .+.....+..+..++...|++++|...+.+..... +.+...+..+...+..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 77777777777777777765321 12234456666677777778888877777776653 2245566677777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811 205 ANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ 255 (400)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (400)
.|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77888887777777665 233445555666677777777777777766654
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3.8e-10 Score=93.43 Aligned_cols=352 Identities=11% Similarity=0.085 Sum_probs=252.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC 92 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
.|-..+..=-..|++..|.++|++..+- .|+...|.+.+..-.+-+.++.|..+|+..+-. .|++..|-...+.=.
T Consensus 143 lWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~ 218 (677)
T KOG1915|consen 143 LWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEE 218 (677)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHH
Confidence 3444444455679999999999998875 799999999999999999999999999999875 589999999999999
Q ss_pred hcCCHHHHHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcc---------------------
Q 015811 93 AESRIVEAAALFTKLKAF-GCE-PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEI--------------------- 149 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------- 149 (400)
+.|....|..+|+...+. |-. .+...+.+...-=.++..++.|.-+|+-..+.-+..
T Consensus 219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence 999999999999998864 210 111223333322223444444444444333221100
Q ss_pred ----------------cccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HhHHHHHHHH---H
Q 015811 150 ----------------GVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV-------VTYTSLIHGF---C 203 (400)
Q Consensus 150 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~ 203 (400)
....+.|-.+|-..++.-...|+.+...++|+..+.. ++|-. ..|..+-.++ .
T Consensus 299 IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0002445667777777777888999999999988854 44422 1222222222 2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH----HhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChH
Q 015811 204 HANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNEL----CKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKIN 279 (400)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 279 (400)
...+.+.+.++++..++. ++-...||..+--.| .++.++..|.+++...+. .-|...+|...|..-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHH
Confidence 457888888999888874 555667776665554 467889999999988765 4677888888888888999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC-CCcCHHHHHHHHHHHhccchHHHHHHHHHHH
Q 015811 280 RVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG-IKPTVVTYNTLFHGLFEIRQAERALKLFVEM 358 (400)
Q Consensus 280 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 358 (400)
.+..++++.++.+ |-+..+|......-...|+.+.|..+|+-+++.. +......|...|..-...|.++.|..+++++
T Consensus 455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 9999999999987 5678889888888889999999999999888652 2223445666677667899999999999998
Q ss_pred hhCCCCCChhhHHHHHH
Q 015811 359 QGNDVAADTCTYRTFID 375 (400)
Q Consensus 359 ~~~~~~~~~~~~~~l~~ 375 (400)
++.. +...+|.++..
T Consensus 534 L~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 534 LDRT--QHVKVWISFAK 548 (677)
T ss_pred HHhc--ccchHHHhHHH
Confidence 8643 22335544443
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=1.2e-11 Score=111.80 Aligned_cols=269 Identities=15% Similarity=0.069 Sum_probs=188.8
Q ss_pred CccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---------hcCChHHHHHHHHHHH
Q 015811 78 APNVVTFTSLIKGLCA-----ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC---------RTGHTIVALNLFKEMT 143 (400)
Q Consensus 78 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 143 (400)
..+...|...+++... .++.++|...|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3455555555544321 234689999999999874 334555665555443 2345789999999999
Q ss_pred cCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 015811 144 NGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGV 223 (400)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 223 (400)
+.. +.+...+..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+...
T Consensus 332 ~ld-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 332 ELD-------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred hcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 876 5677888888889999999999999999999874 33566788888999999999999999999998742
Q ss_pred CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 015811 224 QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNIL 303 (400)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 303 (400)
. +...+..++..+...|++++|...++++.+...+-++..+..+..++...|+.++|...+.++.... +.+....+.+
T Consensus 404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l 481 (553)
T PRK12370 404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLL 481 (553)
T ss_pred C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHH
Confidence 2 2333444455677789999999999998775423345567778888899999999999999886652 3334455666
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhC-CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCC
Q 015811 304 INGYCKNKEVEEALSLYNELPFK-GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND 362 (400)
Q Consensus 304 ~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 362 (400)
...|...| ++|...++.+.+. .-.|....+..+ .+.-.|+.+.+..+ +++.+.+
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 66777777 4777777776653 112222233333 34445666665555 7777654
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.3e-11 Score=99.96 Aligned_cols=284 Identities=11% Similarity=0.024 Sum_probs=200.5
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+......-.+-|...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-.-+=.++.+.- |..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444455555666788888888888888764 4566666666777778888777766666776653 556778888888
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811 125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH 204 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (400)
-|...|+..+|.+.|.+....+ +.-...|-.+...+.-.+..++|+..+..+-+. ++-...-+.-+.--|.+
T Consensus 321 YYl~i~k~seARry~SKat~lD-------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMR 392 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHH
Confidence 8888888888888888877655 333457778888888888888888888777654 11111112223344666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC------CCCCcHHHHHHHHHHHHcCCCh
Q 015811 205 ANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC------DVRPNAFTYNTLMDGFCLTGKI 278 (400)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~ 278 (400)
.++.+.|.+.|.+..... |.|+...+.+.-.....+.+.+|..+|+..... .......+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 788888888888777653 556777777777777778888888888766521 0112345677888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811 279 NRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL 342 (400)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 342 (400)
++|+..+++..... +.+..++.++.-.|...|+++.|...|.+.+.. .|+..+...++..+
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 88888888887765 667888888888888888888888888887754 67776666666544
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=2e-11 Score=98.57 Aligned_cols=201 Identities=14% Similarity=0.063 Sum_probs=135.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT 159 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~ 101 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------PNNGDV 101 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHH
Confidence 34556667777777777777777777776653 3345666667777777777777777777777654 345556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYENL-NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC 238 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (400)
+..+...+...|++++|.+.++....... ......+..+...+...|++++|...+.+..... +.+...+..+...+.
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 66777777777777777777777765422 1223455566667777777777777777777653 224456666777777
Q ss_pred hcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811 239 KNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMES 290 (400)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (400)
..|++++|...+++..+.. +.+...+..++..+...|+.+.|..+.+.+..
T Consensus 181 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777777777776652 44555556666667777777777777766654
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=3.4e-12 Score=100.30 Aligned_cols=230 Identities=11% Similarity=-0.051 Sum_probs=157.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 015811 119 YNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSL 198 (400)
Q Consensus 119 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 198 (400)
-+.+.++|.+.|.+.+|.+.++..... .|-+.||..+.++|.+..++..|+.++.+-.+. ++.++....-+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ 296 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQ 296 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhh
Confidence 345677777777777777777776664 456667777777777777777777777776654 23333334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh
Q 015811 199 IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI 278 (400)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 278 (400)
.+.+-..++.++|.++++...+.. +.+......+...|.-.++++.|...+.++.+.|+ -++..|+.+.-+|...+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 666666777777777777777653 44566666666677777777777777777777774 3667777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHH
Q 015811 279 NRVKELFVSMESMGCKHD--DFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFV 356 (400)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 356 (400)
+-++..|.+....--.|+ ...|-.+.......||+..|.+.|+-....+.. +...++.|.-.-.+.|+.++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 777777777765432232 345666777777777777777777777665322 45567777666677777777777777
Q ss_pred HHhh
Q 015811 357 EMQG 360 (400)
Q Consensus 357 ~~~~ 360 (400)
....
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 6654
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=2.7e-10 Score=99.83 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 015811 231 NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN 310 (400)
Q Consensus 231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 310 (400)
..+.+.|...|++++|.+.++..+++. +..+..|..-.+.+-..|++++|...++.....+ .-|...=+..+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 334444555555555555555555543 2224444444555555555555555555555544 22444444444555555
Q ss_pred CCHHHHHHHHhhhhhC
Q 015811 311 KEVEEALSLYNELPFK 326 (400)
Q Consensus 311 ~~~~~A~~~~~~~~~~ 326 (400)
|+.++|..++......
T Consensus 276 ~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 276 GRIEEAEKTASLFTRE 291 (517)
T ss_pred CCHHHHHHHHHhhcCC
Confidence 5555555555554443
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.6e-10 Score=95.88 Aligned_cols=336 Identities=11% Similarity=0.062 Sum_probs=229.4
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHH------------------H
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFG------------------R 71 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~------------------~ 71 (400)
+.-|.....+|...|+|+++.+--...++.+ |+ +..+..-..++-+.|++++|+.=.. +
T Consensus 149 piFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR 226 (606)
T KOG0547|consen 149 PIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAER 226 (606)
T ss_pred chhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHH
Confidence 6788899999999999999999888887764 44 4566666677777777666542111 0
Q ss_pred H------------Hh-cc--CCccHHHHHHHHHHHHhc-------------------------C---CHHHHHHHHHHHH
Q 015811 72 I------------LR-SC--FAPNVVTFTSLIKGLCAE-------------------------S---RIVEAAALFTKLK 108 (400)
Q Consensus 72 ~------------~~-~~--~~~~~~~~~~l~~~~~~~-------------------------~---~~~~a~~~~~~~~ 108 (400)
. .+ .+ +-|+.....+....+... + .+..|.+.+.+-.
T Consensus 227 ~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~ 306 (606)
T KOG0547|consen 227 VLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEEC 306 (606)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Confidence 0 01 11 224444444444433211 0 1222222222211
Q ss_pred Hc-CCCCC-----------hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHH
Q 015811 109 AF-GCEPN-----------VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKA 176 (400)
Q Consensus 109 ~~-~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 176 (400)
.. -..++ ..+.......+.-.|+...|..-|+...... +.+...|-.+...|....+.++.
T Consensus 307 ~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-------~~~~~lyI~~a~~y~d~~~~~~~ 379 (606)
T KOG0547|consen 307 LGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-------PAFNSLYIKRAAAYADENQSEKM 379 (606)
T ss_pred hhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-------cccchHHHHHHHHHhhhhccHHH
Confidence 10 00111 1222222233445799999999999998875 33344488888889999999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811 177 KELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC 256 (400)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (400)
.+.|.+..+.+. -++.+|..-.+...-.+++++|..=|++.+... +.+...|..+.-+..+.+.+++++..|++.++.
T Consensus 380 ~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 380 WKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK 457 (606)
T ss_pred HHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999987653 366777777777778889999999999998764 335566666666777889999999999999886
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-----CCHHHH--HHHHHHHHhcCCHHHHHHHHhhhhhCCCC
Q 015811 257 DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCK-----HDDFSY--NILINGYCKNKEVEEALSLYNELPFKGIK 329 (400)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 329 (400)
++..+..|+.....+..+++++.|.+.|+..++.... .+...+ -.++. +--.+++..|..++++..+.+.+
T Consensus 458 -FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 458 -FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred -CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch
Confidence 4667889999999999999999999999998775311 112211 12221 12348999999999999876432
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 330 PTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
....+..|...-.+.|+.++|+++|++...
T Consensus 536 -ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 536 -CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445788888999999999999999998653
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=4e-10 Score=98.71 Aligned_cols=294 Identities=11% Similarity=0.065 Sum_probs=210.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc--
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE-- 94 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 94 (400)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++ .+...|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 456678899999999999885543 344556777888999999999999999999999863 3666666666665322
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811 95 ---SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI-VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE 170 (400)
Q Consensus 95 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (400)
.+.+....+|+++... -|.......+.-.+.....+. .+..++..+...| + +.+|+.+-..|...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------v---PslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG------V---PSLFSNLKPLYKDP 156 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC------C---chHHHHHHHHHcCh
Confidence 3567778889988766 354444444433333323333 3445556666655 2 34666666666655
Q ss_pred CChHHHHHHHHHHHHc----C----------CCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 015811 171 GFVDKAKELFLQMKYE----N----------LNPNV--VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIM 234 (400)
Q Consensus 171 ~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 234 (400)
...+-..+++...... + -+|+. .++..+...|-..|++++|+++++..+++. +..+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5555555666555432 1 12333 344566778889999999999999999884 33467788888
Q ss_pred HHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHH--------HHHHHHH
Q 015811 235 NELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFS--------YNILING 306 (400)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~ 306 (400)
+.+-..|++.+|.+.++.....+ .-|...-+-.+..+.+.|+.++|..++....+.+..|.... ......+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 56777888888999999999999999999987664333221 2456678
Q ss_pred HHhcCCHHHHHHHHhhhhh
Q 015811 307 YCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 307 ~~~~~~~~~A~~~~~~~~~ 325 (400)
|.+.|++..|+.-|..+.+
T Consensus 315 ~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 8999999999887766654
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=5.4e-12 Score=99.16 Aligned_cols=232 Identities=14% Similarity=0.024 Sum_probs=185.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC 127 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (400)
--+.+..+|.+.|-+.+|.+-++..++. .|-+.+|..|-++|.+..++..|+.++.+-.+.- +-++.......+.+-
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 3367888889999999999988888776 5667788888899999999999999998887662 334444455677788
Q ss_pred hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015811 128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND 207 (400)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (400)
..++.++|.++++...+.. +.+......+...|.-.++++-|+.+|+.+.+.|.. +...|+.+.-+|.-.++
T Consensus 302 am~~~~~a~~lYk~vlk~~-------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 8889999999999888765 556667777777788888999999999999988875 78888888888888899
Q ss_pred HHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHH
Q 015811 208 WNEAKGLLIEMVDQGVQPN--VVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELF 285 (400)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 285 (400)
++-++..|++.+.....|+ ..+|..+.......|++..|.+.|+.....+ ......++.|...-.+.|+++.|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 9999988888876543333 3456667777788899999999998888776 456778888888888999999999999
Q ss_pred HHHHhc
Q 015811 286 VSMESM 291 (400)
Q Consensus 286 ~~~~~~ 291 (400)
+.....
T Consensus 453 ~~A~s~ 458 (478)
T KOG1129|consen 453 NAAKSV 458 (478)
T ss_pred HHhhhh
Confidence 888765
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3e-10 Score=96.02 Aligned_cols=285 Identities=11% Similarity=0.053 Sum_probs=228.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT 159 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+......-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+.. |....+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-------P~~a~s 314 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-------PSKALS 314 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCCcc
Confidence 34445555666778899999999999999875 7788888888889999999988888888888764 677889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK 239 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (400)
|-.+.-.|...|..++|.+.|.+....+.. =...|..+...+.-.+.-++|...+...-+. ++-...-+-.+..-|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHH
Confidence 999999999999999999999998764321 2467888888999999999999999887764 12223334445567888
Q ss_pred cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc----C--CCCCHHHHHHHHHHHHhcCCH
Q 015811 240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESM----G--CKHDDFSYNILINGYCKNKEV 313 (400)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~ 313 (400)
.++.+.|.++|....... |-|+..++-+.......+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 999999999999998865 678888999988888889999999999987621 1 011334688999999999999
Q ss_pred HHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhh
Q 015811 314 EEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLC 378 (400)
Q Consensus 314 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (400)
++|+..+++.+... +-+..++.++.-.|...|+++.|...|.+.+. +.|+..+...++..+.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999999988763 34888899998899999999999999999875 6788877777776543
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=9.2e-12 Score=110.15 Aligned_cols=274 Identities=16% Similarity=0.225 Sum_probs=178.6
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015811 33 LFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGC 112 (400)
Q Consensus 33 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 112 (400)
.+-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-.+.+.+...|+.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556667788888888888888888888888887 8887777766677778888888877777776665
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCC
Q 015811 113 EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY-ENLNPN 191 (400)
Q Consensus 113 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 191 (400)
.|.+.+|..|..+|...|+... ++..++ ....+...+...|.-.....++..+.- .+.-||
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHH-----------------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 5777888888888888887655 222222 112233344555555555555544321 122333
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 015811 192 VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG 271 (400)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (400)
.. +.+......|.|+.+.+++..+....-. . .+..+++-+... ..-..+++.......-.|++.+|..++.+
T Consensus 142 a~---n~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 142 AE---NAILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKR 213 (1088)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence 32 3344445567777777777554322100 0 111123222222 22333444333332225788888888888
Q ss_pred HHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccch
Q 015811 272 FCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQ 347 (400)
Q Consensus 272 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 347 (400)
-...|+.+.|..++.+|.+.|.+.+...|-.|+-+ .++..-+..+++-|.+.|+.|+..|+...+-.+...|.
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888999999999999888888887777666655 77888888888888888888888888888777777554
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=5.3e-11 Score=105.47 Aligned_cols=245 Identities=14% Similarity=0.095 Sum_probs=157.5
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.-||-++|..+|.-|+..|+.+.|- +|..|.....+.+...++.++......++.+.+. .|...+|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 3478899999999999999999998 9999988777778889999999988989888765 578889999
Q ss_pred HHHHHHhcCCHHH---HHHHHHHHH----HcCCCCChhh--------------HHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811 87 LIKGLCAESRIVE---AAALFTKLK----AFGCEPNVIT--------------YNTLINGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 87 l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~--------------~~~l~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
|..+|...||... +.+.+..+. ..|+-....- -...+......|.++.+++++..+...
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999999765 222222211 1221111110 112233333445555555555544332
Q ss_pred CCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 015811 146 NGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP 225 (400)
Q Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 225 (400)
.. ..+ +-.+++-+... +....++........-.|++.+|..++.+...+|+.+.|..++.+|.+.|++.
T Consensus 169 a~-------~~p--~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 169 AW-------NAP--FQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred cc-------cch--HHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 21 011 11123333222 22233333332222114777778888887777888888888888888888777
Q ss_pred CcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCC
Q 015811 226 NVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGK 277 (400)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (400)
+..-|-.++-+ .++...+..++..|.+.|+.|+..|+...+..+...|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77666666544 67777777777777777888888777766666655443
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=1.8e-08 Score=86.90 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=129.8
Q ss_pred CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
..+.+.+.|..+.-.+....++++|++.|..+...+ +.|...|.-+.-.-++.|+++.......++.+.. +.....|.
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~ 147 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWI 147 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHH
Confidence 345677888888888888888999999998888876 5577778777777778888888888777777763 23556778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHH------HHHHhcCChHHHHHHHHHHHcCCCcccccccCChh
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAFG-CEPNVITYNTLI------NGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTV 158 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (400)
.+..++.-.|+...|..+++...+.. ..|+...+.... ......|..++|++.+......- -....
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-------~Dkla 220 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-------VDKLA 220 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-------HHHHH
Confidence 88888888899999998888887654 235555544322 23445777777777776654431 11222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811 159 TYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF 202 (400)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (400)
.-..-...+.+.+++++|..++..++.. .||...|...+..+
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 2334556777888999999999888876 36666555544433
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=7.6e-13 Score=77.06 Aligned_cols=50 Identities=48% Similarity=0.794 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 015811 330 PTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV 379 (400)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (400)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 55566666666666666666666666666666666666666666666553
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=8.1e-13 Score=76.93 Aligned_cols=50 Identities=42% Similarity=0.805 Sum_probs=39.5
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK 58 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 58 (400)
||+.+||.+|.+|.+.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888877753
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=1.5e-09 Score=81.58 Aligned_cols=198 Identities=14% Similarity=0.026 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015811 49 YSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR 128 (400)
Q Consensus 49 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (400)
...+.-.|.+.|+...|..-+++.++..+ .+..+|..+...|.+.|..+.|.+.|++..+.. +-+-.+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 34444555666666666666666665532 244455555666666666666666666665553 3344555556666666
Q ss_pred cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH
Q 015811 129 TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDW 208 (400)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (400)
.|++++|...|++...... +..-..+|..+.-+..+.|+++.|...|++..+... -...+...+.......|++
T Consensus 116 qg~~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 116 QGRPEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDY 189 (250)
T ss_pred CCChHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccc
Confidence 6666666666666554332 233345555666666666666666666666555421 1234455555555666666
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811 209 NEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ 255 (400)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (400)
-.|...++.....+. ++..+.-..|+.--..|+.+.+-+.=..+.+
T Consensus 190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666666665555543 5555555555555566665555554444443
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=3.5e-10 Score=97.91 Aligned_cols=244 Identities=16% Similarity=0.106 Sum_probs=154.0
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----c-CCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRS-----C-FAPNVV-TFTSLIKGLCAESRIVEAAALFTKLKAF-----G-- 111 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 111 (400)
..+...+...|...|+++.|..+++..++. | ..|... ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456777899999999999999999988875 1 123333 3445778899999999999999998753 2
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHc---C
Q 015811 112 CEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT-VTYSIIIDGLCKEGFVDKAKELFLQMKYE---N 187 (400)
Q Consensus 112 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 187 (400)
.+.-..+++.|..+|.+.|++++|...++...+..........|.. ..++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1112356777888899999999998888876553311000011222 23455666777788888888887765432 1
Q ss_pred CCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C---CCCcccHHHHHHHHHhcCCchhHHHHHHHHHh-
Q 015811 188 LNPN----VVTYTSLIHGFCHANDWNEAKGLLIEMVDQG----V---QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ- 255 (400)
Q Consensus 188 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 255 (400)
+.++ ..+++.|...|...|++++|.+++++++... . .-....++.+...|.+.+.+++|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1111 2567777777777777777777777765431 1 11123455566666666666666666654322
Q ss_pred ---CC--CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811 256 ---CD--VRPNAFTYNTLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 256 ---~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
.| .+....+|..|...|...|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 11223455666666666666666666655553
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=9.5e-09 Score=83.90 Aligned_cols=289 Identities=10% Similarity=-0.013 Sum_probs=194.0
Q ss_pred cCChhhHHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 015811 59 MGQVSLGFVIFGRILRS-CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALN 137 (400)
Q Consensus 59 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 137 (400)
.++...|...+-.+... -++.|+.....+.+++...|+..+|+..|++....+ +-+........-.+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 34444444444333332 245577778888888889999999998888887552 1122222223334456778877777
Q ss_pred HHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 138 LFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIE 217 (400)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (400)
+...+.... +-+...|-.-+......++++.|+.+-++.++.+ +.+...+..-...+...++.++|.-.|+.
T Consensus 288 L~~~Lf~~~-------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 288 LMDYLFAKV-------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HHHHHHhhh-------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHH
Confidence 777766543 2334445455555566778888888888877653 22445555555667778888888888888
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHH-HHHH-cCCChHHHHHHHHHHHhcCCCC
Q 015811 218 MVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLM-DGFC-LTGKINRVKELFVSMESMGCKH 295 (400)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~ 295 (400)
.+... +.+..+|.-++.+|...|.+.+|..+-....+. ++.+..++..+. ..+. ...--++|.++++...... |.
T Consensus 360 Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~ 436 (564)
T KOG1174|consen 360 AQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PI 436 (564)
T ss_pred HHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-Cc
Confidence 77653 456788888999999889888888777665553 244555555542 2222 2223467888888777653 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811 296 DDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGN 361 (400)
Q Consensus 296 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (400)
-....+.+...+...|..+.++.++++.... .||....+.|.+.+...+.+++|+..|......
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455677778888888888899988887765 678888888888888888888888888877663
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.1e-08 Score=83.51 Aligned_cols=298 Identities=16% Similarity=0.049 Sum_probs=220.7
Q ss_pred HHHHHHHHc--cCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811 15 NILLGCLAK--NKHYDTVLSLFKRLNSI-GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL 91 (400)
Q Consensus 15 ~~l~~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
..-+.++++ .++...|.+++-.+... -++-|+.....+..++...|+.++|...|++....++. +........-.+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHH
Confidence 333444443 45555555555444332 34567888999999999999999999999998875321 333333344455
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG 171 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (400)
.+.|+.+....+...+.... ..+...|-.-...+....+++.|+.+-++..+.+ +.+...+-.-...+...+
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-------~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-------PRNHEALILKGRLLIALE 348 (564)
T ss_pred HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-------cccchHHHhccHHHHhcc
Confidence 67888888888888776542 2344455555666677889999999999988765 456667777778889999
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH-HHHH-hcCCchhHHHH
Q 015811 172 FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIM-NELC-KNGKMDNASRL 249 (400)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~ 249 (400)
++++|.-.|+...... +.+..+|.-|+.+|...|.+.+|...-+..... ++.+..+...+. ..+. ...--++|.++
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 9999999999988652 346789999999999999999998887776654 244555555542 2222 22334789999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 250 LDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
++...+.. +.-....+.+...+...|..+.+..+++..... .||....+.|.+.+...+.+++|.+.|......
T Consensus 427 ~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 427 AEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99887754 333556777888899999999999999998875 689999999999999999999999999998876
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=6.4e-08 Score=82.73 Aligned_cols=370 Identities=13% Similarity=0.032 Sum_probs=223.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES 95 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (400)
+=+..+.+++++++|.+...++...+ +.+...+.+=+-++.+.+++++|+.+.+.-... ..+...+-.=..+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34566778899999999999999876 556777888788899999999999665543221 111111112234455788
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcc-----------------c----cccc
Q 015811 96 RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEI-----------------G----VVFK 154 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~----~~~~ 154 (400)
..++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+... . ....
T Consensus 94 k~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 94 KLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred cHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 9999999888322 2234466666788889999999999999986554310 0 0001
Q ss_pred CChhhHHHHHH---HHHhcCChHHHHHHHHHHHHc-------CCCCCh-------HhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 155 PNTVTYSIIID---GLCKEGFVDKAKELFLQMKYE-------NLNPNV-------VTYTSLIHGFCHANDWNEAKGLLIE 217 (400)
Q Consensus 155 ~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (400)
....+|..+.+ .+...|++.+|+++++...+. +..-+. .+-.-+...+-..|+-.+|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 11234544443 455789999999999988321 111111 1122344556678999999999988
Q ss_pred HHHCCCCCCcccHHH---------------------------------------------------HHHHHHh-------
Q 015811 218 MVDQGVQPNVVSSNV---------------------------------------------------IMNELCK------- 239 (400)
Q Consensus 218 ~~~~~~~~~~~~~~~---------------------------------------------------l~~~~~~------- 239 (400)
.++... +|...... ++..|..
T Consensus 250 ~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 250 IIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 887642 22211100 0000100
Q ss_pred -------------------------cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHH--------
Q 015811 240 -------------------------NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFV-------- 286 (400)
Q Consensus 240 -------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------- 286 (400)
......+..++...-+....-...+.-..++.....|+++.|.+++.
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 00112222222222222111112334445566677888998888888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC------CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 287 SMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK------GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
.+.+.+..| .+...++..+.+.++-+.|..++...... +-.--..++..+...-.+.|+-++|..+++++.+
T Consensus 409 s~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 409 SILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 555544333 44556677777777766666666655431 1111122333344444667999999999999998
Q ss_pred CCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCCCCC
Q 015811 361 NDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGNT 397 (400)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 397 (400)
.+ ++|..+...++-+|++. +.+.|..+-+.+.+..
T Consensus 487 ~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 487 FN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLK 521 (652)
T ss_pred hC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCcc
Confidence 64 56888899999999876 5677777777665543
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=3.3e-09 Score=79.73 Aligned_cols=199 Identities=12% Similarity=0.006 Sum_probs=148.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811 83 TFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI 162 (400)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
+...|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhh
Confidence 44556677888888888888888888775 4456778888888888888888888888888765 556778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811 163 IIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG 241 (400)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (400)
....+|..|.+++|...|+.......-+ ...+|..+.-+..+.|+++.|...|++.++.. +-...+...+.....+.|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcc
Confidence 8888888888888888888887653222 23577777777788888888888888888764 334456666777778888
Q ss_pred CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811 242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESM 291 (400)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (400)
++-.|...++.....+. ++...+-..|+.-...|+.+.+.+.=..+.+.
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888888888777663 67777777777777778777776666555543
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.36 E-value=1.6e-08 Score=87.21 Aligned_cols=203 Identities=8% Similarity=-0.042 Sum_probs=121.4
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCC-CCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGL-FPDL-YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
|..+..|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+..+ .+...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHH
Confidence 45566777777777777888887776666554321 1121 2222333455677888888888888877632 2333333
Q ss_pred H---HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811 86 S---LIKGLCAESRIVEAAALFTKLKAFGCEPN-VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS 161 (400)
Q Consensus 86 ~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
. +.......+....+.+.+... ....|+ ......+...+...|++++|...+++..+.. +.+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~ 152 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVH 152 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHH
Confidence 2 111112234444444444431 111222 2333445566777888888888888887764 44566677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYENL-NPNV--VTYTSLIHGFCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (400)
.+..++...|++++|...+++...... .++. ..|..+...+...|++++|..++++...
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777788888888888888887765421 1222 2344566777778888888888877754
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=3e-09 Score=88.27 Aligned_cols=217 Identities=16% Similarity=0.011 Sum_probs=107.3
Q ss_pred ChhhHHHHHHHHHhccC-Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 015811 61 QVSLGFVIFGRILRSCF-AP--NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALN 137 (400)
Q Consensus 61 ~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 137 (400)
..+.++.-+.+++.... .| ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44555555555554211 11 12345555556666666666666666666553 3345666666666666666666666
Q ss_pred HHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 138 LFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIE 217 (400)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (400)
.|++..+.. +.+..++..+..++...|++++|.+.|+...+.. |+..........+...+++++|...+..
T Consensus 120 ~~~~Al~l~-------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 120 AFDSVLELD-------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 666666543 3344555556666666666666666666666542 2222111112222334556666666654
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC---C---CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811 218 MVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD---V---RPNAFTYNTLMDGFCLTGKINRVKELFVSMESM 291 (400)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (400)
..... .++...+ .......|+...+ ..+..+.+.. + +.....|..+...+...|++++|...|++..+.
T Consensus 191 ~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 43321 2221111 1222334444333 2333332210 0 011234555555555566666666666655554
Q ss_pred C
Q 015811 292 G 292 (400)
Q Consensus 292 ~ 292 (400)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 3
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=3e-10 Score=98.33 Aligned_cols=248 Identities=16% Similarity=0.121 Sum_probs=180.1
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC-----CC-CCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhc----
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSI-----GL-FPDLY-TYSILINCFCKMGQVSLGFVIFGRILRS---- 75 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 75 (400)
.|.-..+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++.+|..+|+.++..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3344566677999999999999999999998664 21 23333 3344778899999999999999998863
Q ss_pred -cC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811 76 -CF--APNVVTFTSLIKGLCAESRIVEAAALFTKLKAF-----GC-EPNV-ITYNTLINGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 76 -~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
|. +.-..+++.|..+|.+.|++++|..++++..+. |. .|.+ ..++.+...+...+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 21 123456778888999999999999888876532 21 1222 23566777888999999999998876543
Q ss_pred CCccccccc-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----C--CC-ChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 146 NGEIGVVFK-PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN----L--NP-NVVTYTSLIHGFCHANDWNEAKGLLIE 217 (400)
Q Consensus 146 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (400)
-........ --..+++.+...|...|++++|.++++.++... . .+ ....++.+...|.+.+++.+|..+|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 211000011 224678999999999999999999999987541 1 12 235677888899999999989888877
Q ss_pred HHHC----CC--CCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 218 MVDQ----GV--QPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 218 ~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
.... |. +....+|..|...|...|+++.|.++.+.+.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5432 21 2234678889999999999999999988775
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=2.5e-09 Score=88.72 Aligned_cols=219 Identities=12% Similarity=0.014 Sum_probs=159.4
Q ss_pred cCChhHHHHHHHHHHhCC-CCC--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHH
Q 015811 24 NKHYDTVLSLFKRLNSIG-LFP--DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEA 100 (400)
Q Consensus 24 ~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 100 (400)
.+..+.++.-+.++.... ..| ....|..+...+...|+.+.|...|++.++..+ .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 456677888888887542 122 245688888899999999999999999999753 4788999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHH
Q 015811 101 AALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELF 180 (400)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 180 (400)
...|++..+.. +-+..++..+..++...|++++|++.++...... |+..........+...+++++|...+
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--------PNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999874 3456788888889999999999999999998864 33322233333445678899999999
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC---CCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 181 LQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ---GV---QPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
....... .++...+ .+ .....|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|...|+...
T Consensus 189 ~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7765432 3332222 22 22334555443 344444422 11 1123578889999999999999999999999
Q ss_pred hCC
Q 015811 255 QCD 257 (400)
Q Consensus 255 ~~~ 257 (400)
+.+
T Consensus 264 ~~~ 266 (296)
T PRK11189 264 ANN 266 (296)
T ss_pred HhC
Confidence 876
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=5.6e-09 Score=81.55 Aligned_cols=295 Identities=14% Similarity=0.119 Sum_probs=205.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH-HHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS-LIKGL 91 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 91 (400)
-|++.+..+.+..+++.|++++....++. +.+......+..+|....++..|-+.|+++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 47788888899999999999999888775 337788899999999999999999999999876 344444432 34666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNVI--TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
.+.+.+..|+++...|... +... +...-.......+++..+..++++....+ +..+.+...-...+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYK 156 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeec
Confidence 7889999999999888642 2221 11111222345778888888888876433 44555555556678
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------Ccc--------
Q 015811 170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP-------------NVV-------- 228 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~-------- 228 (400)
.|+++.|.+-|+...+-+---....|+..+ ++.+.++++.|++...+++++|++. |..
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 899999999999988764333455665544 5567789999999999988876532 111
Q ss_pred -------cHHHHHHHHHhcCCchhHHHHHHHHHhC-CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHH
Q 015811 229 -------SSNVIMNELCKNGKMDNASRLLDLMVQC-DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSY 300 (400)
Q Consensus 229 -------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 300 (400)
.++.-...+.+.++++.|.+.+..|.-+ ....|+.|+..+.-.- -.+++....+-+.-+...+ +....||
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHH
Confidence 1222233456778888888888777432 2345677776665432 2345555555566666655 4567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811 301 NILINGYCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 301 ~~l~~~~~~~~~~~~A~~~~~~~~~ 325 (400)
..++-.||+..-++.|-.++.+-..
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcc
Confidence 8888899999889998888866443
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=8.3e-08 Score=82.76 Aligned_cols=306 Identities=10% Similarity=-0.032 Sum_probs=186.3
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhccC-CccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH--
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCF-APNV-VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNT-- 121 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 121 (400)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44566666677777888887777777665422 1121 222233445667899999999999988763 334444442
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 015811 122 -LINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIH 200 (400)
Q Consensus 122 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 200 (400)
........+....+.+.+...... .+........+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPE-------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 111122245555555555542111 23334455566678889999999999999999864 335677788889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCc--ccHHHHHHHHHhcCCchhHHHHHHHHHhCCC-CCcHHHH-H--HHHHHHH
Q 015811 201 GFCHANDWNEAKGLLIEMVDQGVQ-PNV--VSSNVIMNELCKNGKMDNASRLLDLMVQCDV-RPNAFTY-N--TLMDGFC 273 (400)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~ 273 (400)
.+...|++++|...+++....... ++. ..+..+...+...|++++|..+++....... .+..... + .++.-+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 999999999999999998875321 222 2344677889999999999999999864432 1112111 1 2233333
Q ss_pred cCCChHHHHHH--H-HHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCC------cCHHHHHHHH--HH
Q 015811 274 LTGKINRVKEL--F-VSMESM-GCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIK------PTVVTYNTLF--HG 341 (400)
Q Consensus 274 ~~~~~~~a~~~--~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------p~~~~~~~l~--~~ 341 (400)
..|....+.+. + ...... ..............++...|+.+.|..+++.+...... ....+-..++ .+
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 44433333322 1 111111 00111222235667778899999999999888653211 0011112222 34
Q ss_pred HhccchHHHHHHHHHHHhh
Q 015811 342 LFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~ 360 (400)
+...|++++|.+.+.....
T Consensus 317 ~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 317 AFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5678999999999988764
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=6.7e-08 Score=77.57 Aligned_cols=88 Identities=13% Similarity=0.137 Sum_probs=59.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH
Q 015811 18 LGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI 97 (400)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (400)
+.-+..++++..|+.+++--...+-.....+-.-+..++...|++++|...|..+.+.. .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566778888888888876654422222333344566778899999999988887754 55666777777776677777
Q ss_pred HHHHHHHHH
Q 015811 98 VEAAALFTK 106 (400)
Q Consensus 98 ~~a~~~~~~ 106 (400)
.+|..+-.+
T Consensus 108 ~eA~~~~~k 116 (557)
T KOG3785|consen 108 IEAKSIAEK 116 (557)
T ss_pred HHHHHHHhh
Confidence 777766544
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.1e-08 Score=81.94 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=76.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC-------------------
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF------------------- 77 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 77 (400)
+...+.+.|++++|+..|..+.+.. .++...+..+.-++.-.|.+.+|..+-.+..+...
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence 5667788999999999999987755 67777788887777778888888877665433210
Q ss_pred ------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCChHHHHHHHHHHHcC
Q 015811 78 ------APNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL-INGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 78 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
..+..--.+|.....-.-.+++|++++.+.... .|+-...|.. .-+|.+..-++-+.++++-..+.
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 000111112222222223456677777766654 3444444443 33455666666666666666554
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=2.5e-07 Score=80.09 Aligned_cols=335 Identities=11% Similarity=0.093 Sum_probs=190.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRS-CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL 126 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (400)
.|...++.+..+|++......|+..+.. .+.....+|...+......+-++-+..++++.++. ++..-...+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4555556666777777777777777653 22334557888888888888888999999998854 444467778888
Q ss_pred HhcCChHHHHHHHHHHHcCCCcccccccCChhh--------------------------------------HHHHHHHHH
Q 015811 127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT--------------------------------------YSIIIDGLC 168 (400)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~l~~~~~ 168 (400)
+..+++++|-+.+..........+...+.+... |.+|...|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 889999998888877766543222112333333 444555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHCCC---
Q 015811 169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND----------------------WNEAKGLLIEMVDQGV--- 223 (400)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~~--- 223 (400)
+.|.+++|.++|++.... ..+..-|..+..+|+.-.. ++-....|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 555555555555554443 1233333344443332111 0111111111111100
Q ss_pred --------CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCC------cHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811 224 --------QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRP------NAFTYNTLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 224 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
+-+...|.. +.-+..|+..+-...+.++.+. +.| -...|..+...|-..|+++.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 000000000 0112234455555556555442 122 13457777888888899999999999887
Q ss_pred hcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC----------CCc-------CHHHHHHHHHHHhccchHH
Q 015811 290 SMGCKHD---DFSYNILINGYCKNKEVEEALSLYNELPFKG----------IKP-------TVVTYNTLFHGLFEIRQAE 349 (400)
Q Consensus 290 ~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------~~p-------~~~~~~~l~~~~~~~~~~~ 349 (400)
+...+-- ..+|......=.+..+++.|++++++..... ..| +...|..+++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7543221 2345555555567778888888888765321 111 2334555555555567788
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhC
Q 015811 350 RALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKG 392 (400)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 392 (400)
....+++++.+..+. ++.+......-+-...-++++++.+++
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 888888888876654 333333344445566777888777765
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.24 E-value=1.4e-09 Score=88.94 Aligned_cols=249 Identities=13% Similarity=0.036 Sum_probs=131.7
Q ss_pred HHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 015811 56 FCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVA 135 (400)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 135 (400)
+.-.|++..++.-.+ ........+.....-+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344566666665444 222222223334445556666666655433 2332222 45555554444444333444455
Q ss_pred HHHHHHHHcCCCccccccc-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 015811 136 LNLFKEMTNGNGEIGVVFK-PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGL 214 (400)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 214 (400)
+.-++...... .. .+.........++...|++++|++++... .+.......+..+.+.++++.|.+.
T Consensus 86 l~~l~~~~~~~------~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 86 LEELKELLADQ------AGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp HHHHHHCCCTS---------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhc------cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 54444433322 11 12222222233455567777777666532 2455566667777777777777777
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHh----cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811 215 LIEMVDQGVQPNVVSSNVIMNELCK----NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMES 290 (400)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (400)
++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+++.+..++...|++++|..++.+...
T Consensus 154 l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77776542 33444444444432 23577777777776554 356667777777777777777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHhhhhhC
Q 015811 291 MGCKHDDFSYNILINGYCKNKEV-EEALSLYNELPFK 326 (400)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~ 326 (400)
.+ +.++.++..++.+....|+. +.+.+.+.++...
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 54 34556666666666666665 5566677766654
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=1.6e-07 Score=75.16 Aligned_cols=302 Identities=10% Similarity=0.038 Sum_probs=224.5
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHH-HHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVT-FTSL 87 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 87 (400)
.++.-.-.+...+..+|++..|+.-|....+.+ +.+-.++..-...|...|+...|+.-+..+++. +||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 444555567778888999999999999988653 333445566667889999999999999999886 555432 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhh----------------HHHHHHHHHhcCChHHHHHHHHHHHcCCCcccc
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVIT----------------YNTLINGLCRTGHTIVALNLFKEMTNGNGEIGV 151 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (400)
...+.++|.+++|..=|+..++.. |+..+ ....+..+...|+...|+..+..+.+..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~----- 185 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ----- 185 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-----
Confidence 456789999999999999998873 32211 2233445667899999999999999874
Q ss_pred cccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc--
Q 015811 152 VFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVS-- 229 (400)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 229 (400)
+.+...+..-..+|...|++..|+.=++...+.. ..++.++--+-..+...|+.+.++..+++.++. .||...
T Consensus 186 --~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf 260 (504)
T KOG0624|consen 186 --PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCF 260 (504)
T ss_pred --cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHH
Confidence 6788889999999999999999998887776653 335667777778888999999999999988875 455432
Q ss_pred --HHHH---------HHHHHhcCCchhHHHHHHHHHhCCCCCcHH---HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 015811 230 --SNVI---------MNELCKNGKMDNASRLLDLMVQCDVRPNAF---TYNTLMDGFCLTGKINRVKELFVSMESMGCKH 295 (400)
Q Consensus 230 --~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 295 (400)
|..+ +......++|-++.+..+...+........ .+..+-.++...+++.+|++.-.++.+.. +.
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~ 339 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-ch
Confidence 2111 123345677888888887777764332222 34455667778899999999999998875 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 296 DDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 296 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
|+.++..-..+|.-...++.|+.-|+...+.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5888888899999999999999999998875
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=3.3e-07 Score=81.00 Aligned_cols=371 Identities=12% Similarity=0.054 Sum_probs=252.3
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc-cHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP-NVVTFTSL 87 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 87 (400)
.+...|..+.-++...|+++.+.+.|++.... ..-....|..+...+...|.-..|..+++........| +...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 46778888888999999999999999997653 24467788999889999999999999998877654334 33333333
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHcCCCcccc
Q 015811 88 IKGLC-AESRIVEAAALFTKLKAF--GC--EPNVITYNTLINGLCRT-----------GHTIVALNLFKEMTNGNGEIGV 151 (400)
Q Consensus 88 ~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 151 (400)
-+.|. +.+..++++++-.+.... +. ......+..+.-+|... ....++++.+++..+.+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d----- 474 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD----- 474 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-----
Confidence 34444 346677777777666652 11 12334444444444321 12356788888887766
Q ss_pred cccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------
Q 015811 152 VFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ-GVQ------ 224 (400)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------ 224 (400)
+.|+.....+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...+. |..
T Consensus 475 --~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 475 --PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred --CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 33444444455557778899999999999998866668889999999999999999999998876643 110
Q ss_pred ------------CCcccHHHHHHHHH-----------------------hcCCchhHHHHHHHHH--------hCC----
Q 015811 225 ------------PNVVSSNVIMNELC-----------------------KNGKMDNASRLLDLMV--------QCD---- 257 (400)
Q Consensus 225 ------------~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~---- 257 (400)
....|...++..+- ..++..++.+....+. ..+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 00111222222111 0112222222221110 001
Q ss_pred -----C--CCc------HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 258 -----V--RPN------AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 258 -----~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
+ .|+ ...|......+.+.+..++|...+.+..... +-....|......+...|.+.+|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1 122 2245566677888999999999998887764 5567778888888999999999999999887
Q ss_pred hCCCCc-CHHHHHHHHHHHhccchHHHHHH--HHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811 325 FKGIKP-TVVTYNTLFHGLFEIRQAERALK--LFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK 391 (400)
Q Consensus 325 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 391 (400)
.. .| ++....++...+.+.|+..-|.. ++.++.+.+ +.+...|..+-..+.+.|+.+.|...+.
T Consensus 712 ~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 712 AL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 65 34 45577888889999998888877 999998865 3377789999999999999998865443
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=1.2e-06 Score=75.97 Aligned_cols=221 Identities=11% Similarity=0.044 Sum_probs=134.7
Q ss_pred cCChHHHHHHHHHHHHcCCCC------ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhc
Q 015811 170 EGFVDKAKELFLQMKYENLNP------NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPN---VVSSNVIMNELCKN 240 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 240 (400)
.|+..+....|.++.+. +.| -...|..+...|-..|+.+.|..+|++..+-..+-- ..+|......-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45666677777776654 222 124577788888889999999999988876532211 22333344444567
Q ss_pred CCchhHHHHHHHHHhCCC-----------CC------cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 015811 241 GKMDNASRLLDLMVQCDV-----------RP------NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNIL 303 (400)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 303 (400)
.+++.|.++++......- ++ +...|...+..--..|-++....+++++.+..+. ++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 778888888877643211 11 2234444555555667888888888888876643 33333333
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhCCCCcCH-HHHHHHHHHHhc---cchHHHHHHHHHHHhhCCCCCChhhHHHHHH--Hh
Q 015811 304 INGYCKNKEVEEALSLYNELPFKGIKPTV-VTYNTLFHGLFE---IRQAERALKLFVEMQGNDVAADTCTYRTFID--GL 377 (400)
Q Consensus 304 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~ 377 (400)
...+-.+.-++++.+++++-+..--.|++ ..|+..+.-+.+ ..+.+.|..+|++.++ |.+|...-+--|+- .=
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 44445666788999999887665334554 367776665543 3468899999999988 55554432222221 11
Q ss_pred hcCCcchhhHhhhhCC
Q 015811 378 CVRPQVRFTYARRKGN 393 (400)
Q Consensus 378 ~~~g~~~~a~~~~~~~ 393 (400)
-..|-...|...+++.
T Consensus 597 Ee~GLar~amsiyera 612 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERA 612 (835)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 2456666776666553
No 87
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.20 E-value=1.2e-06 Score=74.39 Aligned_cols=376 Identities=11% Similarity=0.116 Sum_probs=222.8
Q ss_pred CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
..|.|+.+|+.||+-+..+ .++++++.++++...- +-....|..-+..-...++++....+|.+.+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 3578999999999988776 9999999999998642 446789999999999999999999999999886 34566666
Q ss_pred HHHHHHHh-cCCHHH----HHHHHHHH-HHcCCCCC-hhhHHHHHHH---------HHhcCChHHHHHHHHHHHcCCCcc
Q 015811 86 SLIKGLCA-ESRIVE----AAALFTKL-KAFGCEPN-VITYNTLING---------LCRTGHTIVALNLFKEMTNGNGEI 149 (400)
Q Consensus 86 ~l~~~~~~-~~~~~~----a~~~~~~~-~~~~~~~~-~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~ 149 (400)
..+.--.+ .++... ..+.|+-. .+.|..+- -..|+..+.- +....+.+...++++++....
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP--- 167 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP--- 167 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc---
Confidence 65543332 222222 22233322 23343332 2334444432 233445666777777776532
Q ss_pred cccccCChhhHH------HHHHHH-------HhcCChHHHHHHHHHHHHc--CCCCChH---------------hHHHHH
Q 015811 150 GVVFKPNTVTYS------IIIDGL-------CKEGFVDKAKELFLQMKYE--NLNPNVV---------------TYTSLI 199 (400)
Q Consensus 150 ~~~~~~~~~~~~------~l~~~~-------~~~~~~~~a~~~~~~~~~~--~~~~~~~---------------~~~~l~ 199 (400)
+.-=...|+ .-++.. -+...+..|.++++++... |+..... .|..+|
T Consensus 168 ---m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I 244 (656)
T KOG1914|consen 168 ---MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWI 244 (656)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Confidence 111111221 111111 1234455666666655321 2111110 121121
Q ss_pred HH-------------------------------------------------HHhcCC-------HHHHHHHHHHHHHCCC
Q 015811 200 HG-------------------------------------------------FCHAND-------WNEAKGLLIEMVDQGV 223 (400)
Q Consensus 200 ~~-------------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~ 223 (400)
.. +...|+ -+++..+++.....-.
T Consensus 245 ~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 245 KWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 11 001111 1222333332222111
Q ss_pred CCCcccHHHHHHHHHh---cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC-CHHH
Q 015811 224 QPNVVSSNVIMNELCK---NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKH-DDFS 299 (400)
Q Consensus 224 ~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 299 (400)
..+..+|..+...--. -...+.....++++......--..+|..++..-.+..-+..|..+|.++.+.+..+ ++..
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence 1111111111111000 11244455556555544322234567777887788888999999999998876666 6777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHh
Q 015811 300 YNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT--CTYRTFIDGL 377 (400)
Q Consensus 300 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 377 (400)
+++++..|+. ++.+-|.++|+--.++ ..-++..-...+..+...++-..+..+|++....++.||. .+|..+++-=
T Consensus 405 a~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 405 AAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 8888887765 7789999999986654 1223444466777888889999999999999987666544 6899999988
Q ss_pred hcCCcchhhHhhhhCC
Q 015811 378 CVRPQVRFTYARRKGN 393 (400)
Q Consensus 378 ~~~g~~~~a~~~~~~~ 393 (400)
..-|+...+..+.++.
T Consensus 483 S~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRR 498 (656)
T ss_pred HhcccHHHHHHHHHHH
Confidence 8999999887776654
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=4e-07 Score=78.90 Aligned_cols=243 Identities=14% Similarity=0.115 Sum_probs=163.7
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG 90 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (400)
...|..++..| ..+++...++..+.+++. .+....+.....-.+...|+.++|........+..+. +...|..+.-.
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHH
Confidence 34455555544 567888888888888773 3445566666666667788889998888888776544 77788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE 170 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (400)
+....++++|++.|......+ +.+...+.-+.-.-+..++++.....-....+.. +.....|..+..++.-.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLL 156 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHH
Confidence 888888999999999888775 5566777777666667777777777666666543 44556677777788888
Q ss_pred CChHHHHHHHHHHHHcC-CCCChHhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCc
Q 015811 171 GFVDKAKELFLQMKYEN-LNPNVVTYTSLI------HGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKM 243 (400)
Q Consensus 171 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (400)
|++..|..+++...+.. -.|+...+.... ......|.++.|.+.+..-... +......-..-...+.+.+++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhH
Confidence 88888888888877653 245555444322 2334567777777766655433 111222233345566778888
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHH
Q 015811 244 DNASRLLDLMVQCDVRPNAFTYNT 267 (400)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~ 267 (400)
++|..++..+.... ||...|..
T Consensus 236 EeA~~~y~~Ll~rn--Pdn~~Yy~ 257 (700)
T KOG1156|consen 236 EEAVKVYRRLLERN--PDNLDYYE 257 (700)
T ss_pred HhHHHHHHHHHhhC--chhHHHHH
Confidence 88888888887753 55444433
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.3e-07 Score=76.50 Aligned_cols=212 Identities=12% Similarity=0.072 Sum_probs=148.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-------
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNV------- 232 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 232 (400)
...+.+...+..++..+++.+....+.. -+..-++....+|...|.+..+...-....+.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3456777778888999999999888764 35566677778888888888877777766665422 2222222
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHH-------------------------HHHHHHHHcCCChHHHHHHHHH
Q 015811 233 IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTY-------------------------NTLMDGFCLTGKINRVKELFVS 287 (400)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~ 287 (400)
+..+|.+.++++.+...|.+.......|+...- ..-...+.+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 334566677888888888776654433332111 1113456678999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC-HHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC
Q 015811 288 MESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT-VVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD 366 (400)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 366 (400)
++... |.|...|....-+|.+.|.+..|+.-.+..++. .|+ ...|..=..++....++++|++.|.+.++.+ |+
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~ 458 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PS 458 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ch
Confidence 99887 678899999999999999999999988887766 333 3344444556666788999999999988753 55
Q ss_pred hhhHHHHHHHhhc
Q 015811 367 TCTYRTFIDGLCV 379 (400)
Q Consensus 367 ~~~~~~l~~~~~~ 379 (400)
..-+..-+.-|..
T Consensus 459 ~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 459 NAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHH
Confidence 5544444444444
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=4.6e-09 Score=85.87 Aligned_cols=250 Identities=16% Similarity=0.082 Sum_probs=163.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
+-+.-.|++..++.-.+ .....-+.+......+.+++...|+.+.++ .++.... +|.......+...+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-------~~~l~av~~la~y~~ 77 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-------SPELQAVRLLAEYLS 77 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-------SCCCHHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-------ChhHHHHHHHHHHHh
Confidence 44556788888886665 222211122344556678888899877544 4443332 566666666666555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811 169 KEGFVDKAKELFLQMKYENLNPNVVTY-TSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS 247 (400)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (400)
...+-+.+..-++........++..++ ......+...|++++|++++... .+.......+.+|.+.++++.|.
T Consensus 78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAE 151 (290)
T ss_dssp TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHH
Confidence 444555555555444333322222233 33345566789999999988642 35667778889999999999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHH----cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811 248 RLLDLMVQCDVRPNAFTYNTLMDGFC----LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNEL 323 (400)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 323 (400)
+.++.|.+.+ .| .+...+..++. -...+.+|..+|+++.+. .++++.+.+.+..++...|++++|..++.+.
T Consensus 152 k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 152 KELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999998753 34 34444544443 234689999999998765 4678999999999999999999999999998
Q ss_pred hhCCCCcCHHHHHHHHHHHhccchH-HHHHHHHHHHhh
Q 015811 324 PFKGIKPTVVTYNTLFHGLFEIRQA-ERALKLFVEMQG 360 (400)
Q Consensus 324 ~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 360 (400)
...+.. ++.++..++.+....|+. +.+.+++.++..
T Consensus 228 l~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 228 LEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 876433 666777777777777877 667788888876
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=1.1e-06 Score=85.70 Aligned_cols=331 Identities=9% Similarity=-0.027 Sum_probs=202.3
Q ss_pred HHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CCh--hhHHHHHHHH
Q 015811 55 CFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE------PNV--ITYNTLINGL 126 (400)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~ 126 (400)
.....|+++.+..+++.+.......+..........+...|+++++...+....+.--. +.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34556777776666665422111112223344455566789999999998877543101 111 1122233455
Q ss_pred HhcCChHHHHHHHHHHHcCCCcccccccCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHhHHH
Q 015811 127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPN----TVTYSIIIDGLCKEGFVDKAKELFLQMKYENL---NPN--VVTYTS 197 (400)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ 197 (400)
...|++++|...+++...... ..+ ....+.+...+...|++++|...+.+...... .+. ..++..
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 463 INDGDPEEAERLAELALAELP------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCC------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 678999999999998765321 111 12345566677889999999999988764311 111 234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC---CcccHHHHHHHHHhcCCchhHHHHHHHHHhCC--CCC--cHHHHH
Q 015811 198 LIHGFCHANDWNEAKGLLIEMVDQ----GVQP---NVVSSNVIMNELCKNGKMDNASRLLDLMVQCD--VRP--NAFTYN 266 (400)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~ 266 (400)
+...+...|++++|...+++.... +... ....+..+...+...|++++|...+....... ..+ ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 667788899999999998886653 2111 11233445566777899999999988765431 111 233445
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhcC--CCCCHHH----HHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCH---HHHHH
Q 015811 267 TLMDGFCLTGKINRVKELFVSMESMG--CKHDDFS----YNILINGYCKNKEVEEALSLYNELPFKGIKPTV---VTYNT 337 (400)
Q Consensus 267 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~ 337 (400)
.+...+...|+++.|...+....... ....... ....+..+...|+.+.|..++............ ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 56667788999999999988875421 1111111 011224455688999999998776543211111 11344
Q ss_pred HHHHHhccchHHHHHHHHHHHhhC----CCCCC-hhhHHHHHHHhhcCCcchhhHhhhh
Q 015811 338 LFHGLFEIRQAERALKLFVEMQGN----DVAAD-TCTYRTFIDGLCVRPQVRFTYARRK 391 (400)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 391 (400)
+..++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566778889999999999887642 32222 2355666778889999988866544
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=6.8e-08 Score=75.68 Aligned_cols=294 Identities=11% Similarity=0.062 Sum_probs=196.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNT-LINGL 126 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 126 (400)
-+...+..+.+..+++.|++++..-.++..+ +......|..+|....++..|-+.++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 4566777778888999999999988887532 7778888999999999999999999999876 566555543 35677
Q ss_pred HhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015811 127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAN 206 (400)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (400)
.+.+.+..|+++...|.... ..-..+...-.......+++..+..++++....| +..+.+...-...+.|
T Consensus 89 Y~A~i~ADALrV~~~~~D~~-------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNP-------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHhcccHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 78899999999999887632 1111222222223345788888888888766432 3334444444456889
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCC-------------CcHH--------HH
Q 015811 207 DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVR-------------PNAF--------TY 265 (400)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~ 265 (400)
+++.|.+-|+...+-+--.....|+..+ +..+.++++.|.+...+++++|++ ||.. .-
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999999999988764333445566544 566789999999999999887653 1211 11
Q ss_pred HHHHH-------HHHcCCChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHH
Q 015811 266 NTLMD-------GFCLTGKINRVKELFVSMES-MGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNT 337 (400)
Q Consensus 266 ~~l~~-------~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 337 (400)
+.++. .+.+.++++.|.+.+-.|.- .....|+.|...+.-.- ..+++.+..+-+.-+..... -...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 22333 34567888888877777632 12234566655443222 23344444444444444432 35678888
Q ss_pred HHHHHhccchHHHHHHHHHH
Q 015811 338 LFHGLFEIRQAERALKLFVE 357 (400)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~ 357 (400)
++-.|++..-++-|-.++.+
T Consensus 316 lLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhh
Confidence 88888888888888777765
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=2.1e-06 Score=76.12 Aligned_cols=340 Identities=13% Similarity=0.028 Sum_probs=219.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhH
Q 015811 41 GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPN-VITY 119 (400)
Q Consensus 41 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 119 (400)
.+.-+...|..+.-++...|+++.+.+.|++.....+. ....|..+...+...|.-..|..+++......-.|+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567889999999999999999999999998875433 677899999999999999999999988765432233 3333
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh-----------cCChHHHHHHHHHHHHcC
Q 015811 120 NTLINGLC-RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK-----------EGFVDKAKELFLQMKYEN 187 (400)
Q Consensus 120 ~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~ 187 (400)
-..-..|. +.+..++++.+-.++....+.....++| ..|..+.-+|.. .....++++.+++..+.+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 33333333 4677788887777776632211111233 333333333332 122456777788877654
Q ss_pred C-CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCC-------
Q 015811 188 L-NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVR------- 259 (400)
Q Consensus 188 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------- 259 (400)
. .|+...| +.--|+..++.+.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....-..
T Consensus 475 ~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 2 3333333 33345677899999999999999866778899999999999999999999998776543100
Q ss_pred ------------CcHHHHHHHHHHHHc---------C--------------CChHHHHHHHHHH--------HhcC----
Q 015811 260 ------------PNAFTYNTLMDGFCL---------T--------------GKINRVKELFVSM--------ESMG---- 292 (400)
Q Consensus 260 ------------~~~~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~--------~~~~---- 292 (400)
....|...++..+-. . ++..++....+.+ ...+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 001122222222210 0 1111111111111 0111
Q ss_pred -----C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 293 -----C--KHD------DFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 293 -----~--~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
. .|+ ...|......+.+.+..++|...+.+..... +.....|......+...|.+.+|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 0 111 1245567788899999999998888887652 3345566666677888999999999999888
Q ss_pred hCCCCC-ChhhHHHHHHHhhcCCcchhhHh
Q 015811 360 GNDVAA-DTCTYRTFIDGLCVRPQVRFTYA 388 (400)
Q Consensus 360 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 388 (400)
.. .| +.....++...+...|+..-|..
T Consensus 712 ~l--dP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 712 AL--DPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred hc--CCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 64 44 44577889999999997776554
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=1.2e-06 Score=70.31 Aligned_cols=305 Identities=12% Similarity=0.034 Sum_probs=190.7
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HH
Q 015811 44 PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYN-TL 122 (400)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l 122 (400)
.++.-..-+...+...|++..|+.-|-..++.++. +-.++-.-...|...|+...|+.=+.+.++. +||-..-. .-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 34555666777888888999998888888765211 2223333445677888888888888888876 56654322 23
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH------------HHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 015811 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS------------IIIDGLCKEGFVDKAKELFLQMKYENLNP 190 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 190 (400)
...+.+.|.+++|..-|+...+..+.. ......+. ..+..+...|+...|+.....+++.. +-
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~----~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~W 187 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSN----GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PW 187 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCc----chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cc
Confidence 456778899999999999888765210 01111221 22334455677777777777777653 34
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHH----HH
Q 015811 191 NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFT----YN 266 (400)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~ 266 (400)
|...+..-..+|...|.+..|+.=++...+.. ..+...+..+-..+...|+.+.++...++..+. .||... |.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 66667777777777788877777666665543 334555666667777777777777777777664 344322 11
Q ss_pred HH---------HHHHHcCCChHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC-HH
Q 015811 267 TL---------MDGFCLTGKINRVKELFVSMESMGCKHDDFS---YNILINGYCKNKEVEEALSLYNELPFKGIKPT-VV 333 (400)
Q Consensus 267 ~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~ 333 (400)
.+ +......+++.++..-.+...+......... +..+-.++...+++.+|++...+.++. .|+ +.
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~ 342 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHH
Confidence 11 1122345666666666666666542222222 334445566677777777777777654 333 55
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811 334 TYNTLFHGLFEIRQAERALKLFVEMQGN 361 (400)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (400)
++.--..+|.-...+++|+.-|+...+.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6666666777777777777777777663
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=1e-06 Score=85.95 Aligned_cols=340 Identities=12% Similarity=-0.007 Sum_probs=208.6
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC------Ccc--HHHHHHHHHHHH
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF------APN--VVTFTSLIKGLC 92 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~ 92 (400)
+...|++..+..+++.+.......+..........+...|+++++..++......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344556666555555542111111222233445556678999999999887754311 111 122233345566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 93 AESRIVEAAALFTKLKAFGCEPNV----ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
..|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+........+. ......+...+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV-YHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHH
Confidence 889999999999988763111121 23455666677899999999999887653311100 1111234556677788
Q ss_pred hcCChHHHHHHHHHHHHc----CCC--C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CcccHHHHHHHH
Q 015811 169 KEGFVDKAKELFLQMKYE----NLN--P-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG--VQP--NVVSSNVIMNEL 237 (400)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 237 (400)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998887643 211 1 12334455566777899999999998876531 111 123344456677
Q ss_pred HhcCCchhHHHHHHHHHhCC--CCCcHH--H-H-HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHH
Q 015811 238 CKNGKMDNASRLLDLMVQCD--VRPNAF--T-Y-NTLMDGFCLTGKINRVKELFVSMESMGCKHDD---FSYNILINGYC 308 (400)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~--~~~~~~--~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 308 (400)
...|+++.|...+....... ...... . . ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988775421 111110 1 0 11224445678999999988776542211111 11346677888
Q ss_pred hcCCHHHHHHHHhhhhhC----CCCcC-HHHHHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811 309 KNKEVEEALSLYNELPFK----GIKPT-VVTYNTLFHGLFEIRQAERALKLFVEMQGN 361 (400)
Q Consensus 309 ~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (400)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999987653 32222 234555667888999999999999998754
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1e-07 Score=81.39 Aligned_cols=224 Identities=15% Similarity=0.012 Sum_probs=133.8
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHH
Q 015811 19 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIV 98 (400)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 98 (400)
..+.++|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+++.++..+. +....-.|...|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34566777777777777777665 446677777777777777777777777777776432 6667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHH-------HHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC
Q 015811 99 EAAALFTKLKAFGCEPNVITYNT-------LINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG 171 (400)
Q Consensus 99 ~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (400)
.|.+.++..+....+ -...-.. .-..+.....+....++|-++....+ ..+|+.+...|.-.|.-.|
T Consensus 371 ~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhhHHHHhcch
Confidence 777777776554210 0000000 00111112223334444444443331 2356666666666666667
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCchhHHHHH
Q 015811 172 FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPN-VVSSNVIMNELCKNGKMDNASRLL 250 (400)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 250 (400)
++++|.+.|+.++... +-|..+||.|...++...+..+|+..|.+.++. .|+ ..+...|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 7777777777666543 225566777777777666777777777766664 333 234444555666677777666665
Q ss_pred HHH
Q 015811 251 DLM 253 (400)
Q Consensus 251 ~~~ 253 (400)
-..
T Consensus 522 L~A 524 (579)
T KOG1125|consen 522 LEA 524 (579)
T ss_pred HHH
Confidence 444
No 97
>PLN02789 farnesyltranstransferase
Probab=99.03 E-value=2.5e-06 Score=71.01 Aligned_cols=205 Identities=12% Similarity=0.026 Sum_probs=108.6
Q ss_pred hcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh--HH
Q 015811 58 KMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES-RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT--IV 134 (400)
Q Consensus 58 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 134 (400)
..++.++|+.++.++++..+. +..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|.. ++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 344556666666666655322 3344444444444445 4566666666666553 33444555444444444432 45
Q ss_pred HHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CC----
Q 015811 135 ALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA---ND---- 207 (400)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~---- 207 (400)
++.+++++.+.. +-+..+|+...-++...|+++++++.++++++.+.. +...|+.....+.+. |.
T Consensus 127 el~~~~kal~~d-------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 127 ELEFTRKILSLD-------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred HHHHHHHHHHhC-------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 566666666554 455666666666666667777777777777665432 444555444333332 11
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc----CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHc
Q 015811 208 WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN----GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCL 274 (400)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (400)
.++......+++... +-+...|+.+...+... +...+|.+.+....+.+ +.+...+..|+..|+.
T Consensus 199 ~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 234555555555543 33555666665555542 23344666665555543 3345556666666553
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.6e-06 Score=77.82 Aligned_cols=200 Identities=12% Similarity=0.149 Sum_probs=118.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 015811 157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNE 236 (400)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (400)
+..|+.+..+-.+.|...+|++-|-+. .|+..|..++....+.|.|++-.+++....+..-.|. .-..++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHH
Confidence 456777777777777777777665442 2556677777777777888777777776666544433 33456677
Q ss_pred HHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015811 237 LCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEA 316 (400)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 316 (400)
|++.++..+.++++. -|+......+..-|...+.++.|.-+|..+ ..|..|...+...|+++.|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 777777666554432 456666666666677777776666665433 2355566666666666666
Q ss_pred HHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811 317 LSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK 391 (400)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 391 (400)
...-++.- +..+|..+-.+|...+.+.-| +|...++.....-+..++.-|-..|-+++-..+.+
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 65554432 445666666666555444322 23333333334444555555555555555444443
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.6e-07 Score=76.33 Aligned_cols=233 Identities=13% Similarity=0.076 Sum_probs=136.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811 93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF 172 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (400)
+..++..|++.+....+.. -+..-++....+|...|.+.++........+.+.+....+..=...+..+..++.+.++
T Consensus 236 kkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 3334444444444444432 23333444555566666666655555555544422111011111122223335556677
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCCchhHHHHHH
Q 015811 173 VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV-VSSNVIMNELCKNGKMDNASRLLD 251 (400)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 251 (400)
++.++..|.+.......|+. ..+....+++....+...-.+ |.. .-...-...+.+.|++..|...|.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 77788877776654333221 122233344444433333222 221 112223566788999999999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC
Q 015811 252 LMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT 331 (400)
Q Consensus 252 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 331 (400)
++++.. +-|...|..-.-+|.+.|.+..|..-.+...+.+ ++....|.-=..++....++++|...|++.++. .|+
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~ 458 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPS 458 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cch
Confidence 998887 6788899999999999999999998888888775 455666666666777778899999999988876 355
Q ss_pred HHHHHHHHHHH
Q 015811 332 VVTYNTLFHGL 342 (400)
Q Consensus 332 ~~~~~~l~~~~ 342 (400)
..-+..-+.-|
T Consensus 459 ~~e~~~~~~rc 469 (539)
T KOG0548|consen 459 NAEAIDGYRRC 469 (539)
T ss_pred hHHHHHHHHHH
Confidence 44443333333
No 100
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=8.8e-07 Score=73.63 Aligned_cols=215 Identities=10% Similarity=0.064 Sum_probs=159.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG-QVSLGFVIFGRILRSCFAPNVVTFTSLIKGL 91 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
+++.+-..+...++.++|+.+++++.+.. +-+..+|+....++...| ++++++..++++.+.+.+ +..+|+....++
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 45566667778889999999999999875 446677887777777787 679999999999987644 666787766666
Q ss_pred HhcCCH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 92 CAESRI--VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 92 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
.+.|+. +++..+++++.+.. +-+..+|+...-++...|+++++++.++++.+.+ +.+...|+....++.+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------VRNNSAWNQRYFVITR 188 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-------CCchhHHHHHHHHHHh
Confidence 666653 67888998998875 5678899998889999999999999999999876 5567777776666555
Q ss_pred c---CCh----HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 015811 170 E---GFV----DKAKELFLQMKYENLNPNVVTYTSLIHGFCHA----NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC 238 (400)
Q Consensus 170 ~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (400)
. |.. ++.++...+++... +-+...|+.+...+... +...+|.+.+.+....+ +.+...+..++..|+
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 4 222 46677776777653 34667787777777663 34466878877766643 335566777777776
Q ss_pred h
Q 015811 239 K 239 (400)
Q Consensus 239 ~ 239 (400)
.
T Consensus 267 ~ 267 (320)
T PLN02789 267 E 267 (320)
T ss_pred h
Confidence 5
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.5e-07 Score=80.44 Aligned_cols=251 Identities=15% Similarity=0.125 Sum_probs=158.3
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811 125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH 204 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (400)
-+.+.|++.+|.-.|+...... |-+...|..|.......++-..|+..+++..+.. +-+......|.-.|..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTN 365 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhh
Confidence 3456677777777777777665 5566777777777777777777777777777653 2245666666667777
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------CCcccHHHHHHHHHhcCCchhHHHHH-HHHHhCCCCCcHHHHHHHHHHHHcC
Q 015811 205 ANDWNEAKGLLIEMVDQGVQ--------PNVVSSNVIMNELCKNGKMDNASRLL-DLMVQCDVRPNAFTYNTLMDGFCLT 275 (400)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (400)
.|.-..|...++.-+....+ ++...-.. ..+..........++| +...+.+..+|+.+...|...|.-.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 77777777777766543210 00000000 0111111222333333 3344444446777777888788888
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHH-HHHHHHHHHhccchHHHHHHH
Q 015811 276 GKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV-TYNTLFHGLFEIRQAERALKL 354 (400)
Q Consensus 276 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~ 354 (400)
|++++|.+.|+.++... |.|..+||.|...++...+.++|+..|.+.++. .|+.+ ....|.-+|...|.+++|.+.
T Consensus 444 ~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 88888888888887765 556778888888888888888888888888775 55532 444566678888888888887
Q ss_pred HHHHhh---C------CCCCChhhHHHHHHHhhcCCcchhhHh
Q 015811 355 FVEMQG---N------DVAADTCTYRTFIDGLCVRPQVRFTYA 388 (400)
Q Consensus 355 ~~~~~~---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 388 (400)
|-..+. . +..++..+|.+|=.++...++.+-+..
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 766541 1 112234567777667777777664443
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=8.9e-07 Score=83.33 Aligned_cols=245 Identities=11% Similarity=0.083 Sum_probs=158.8
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-cCC---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 34 FKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS-CFA---PNVVTFTSLIKGLCAESRIVEAAALFTKLKA 109 (400)
Q Consensus 34 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 109 (400)
|+++.... +-+...|...+....+.++.++|.++.++.+.. ++. --...|.++++.-...|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444332 334567777777777888888888887777753 111 1234566777766667777777778877776
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 015811 110 FGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN 189 (400)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 189 (400)
. -.....|..|...|.+.+.+++|.++++.|.+.. ......|..++..+.+..+-+.|..++.++.+.-..
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 4 2233456677777888888888888888887763 456677777788888877777888887777654111
Q ss_pred -CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH--HHHH
Q 015811 190 -PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA--FTYN 266 (400)
Q Consensus 190 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 266 (400)
-........+..-.+.|+.+.+..+|+...... +--...|+..+..-.++|+.+.+..+|+++...++.|.. ..|.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 012333444555567788888888887777653 334566777777777888888888888888777665542 3455
Q ss_pred HHHHHHHcCCChHHHHHHHHHHH
Q 015811 267 TLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 267 ~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
..+..--..|+-..++.+=.++.
T Consensus 1676 kwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHHHhcCchhhHHHHHHHHH
Confidence 55555555566555544444443
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=1e-06 Score=77.88 Aligned_cols=177 Identities=16% Similarity=0.141 Sum_probs=108.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh
Q 015811 199 IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI 278 (400)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 278 (400)
+.+......|.+|+.+++.++.+. .-..-|..+...|+..|+++.|.++|.+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 445556677888888888877764 23445677778888888888888887643 1345566778888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh----------CC-----------CCcC--HHHH
Q 015811 279 NRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF----------KG-----------IKPT--VVTY 335 (400)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~-----------~~p~--~~~~ 335 (400)
+.|.++-.+... .......|-+-..-.-+.|++.+|.+++-.+.. .| ..|+ ..|.
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 888777666542 123344444444444455555554444322110 00 1122 2344
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCCCCC
Q 015811 336 NTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGNT 397 (400)
Q Consensus 336 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 397 (400)
..+..-+-..|+...|...|-+.. -|.+-+..|..++-|++|+...+...|.+
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n 938 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGAN 938 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhcccccc
Confidence 455556666777777776664432 46677778888888888888877666554
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.94 E-value=1.1e-06 Score=82.64 Aligned_cols=249 Identities=11% Similarity=0.037 Sum_probs=191.6
Q ss_pred hhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC---CChhhHHHHHHHHHhcCChHHHHH
Q 015811 62 VSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF-GCE---PNVITYNTLINGLCRTGHTIVALN 137 (400)
Q Consensus 62 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 137 (400)
.+.|.+.-+.+... +-+...|-..|......++.++|.++.++.+.. ++. --...|.++++.-..-|.-+...+
T Consensus 1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 33444444444332 345667888999999999999999999998753 111 123467788888778888899999
Q ss_pred HHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 138 LFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIE 217 (400)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (400)
+|+++.+.. ..-..|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+
T Consensus 1519 VFeRAcqyc--------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1519 VFERACQYC--------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred HHHHHHHhc--------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999998854 34567889999999999999999999999876 334678899999999999999999999999
Q ss_pred HHHCCCC-CCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC
Q 015811 218 MVDQGVQ-PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD 296 (400)
Q Consensus 218 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 296 (400)
.++.-.. -........+..-.+.|+.+++..+|+...... +--...|+..+..-.++|+.+.+..+|+++...+++|-
T Consensus 1590 AL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8876211 123445556677789999999999999988764 44577899999999999999999999999998876654
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHhh
Q 015811 297 --DFSYNILINGYCKNKEVEEALSLYNE 322 (400)
Q Consensus 297 --~~~~~~l~~~~~~~~~~~~A~~~~~~ 322 (400)
-+.|...+..=-+.|+-+.+..+=.+
T Consensus 1669 kmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1669 KMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 45677777776677775554444333
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=2.8e-07 Score=74.34 Aligned_cols=186 Identities=12% Similarity=-0.018 Sum_probs=112.6
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccH--HH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNV--VT 83 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 83 (400)
.....+..+...+.+.|++++|...|+++.... +.+ ..++..+..++...|+++.|...++.+.+..+.... ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 455667777788888888888888888887653 222 246677788888888888888888888876432111 13
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811 84 FTSLIKGLCAE--------SRIVEAAALFTKLKAFGCEPNV-ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK 154 (400)
Q Consensus 84 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 154 (400)
+..+..++... |+.++|.+.++.+.+. .|+. ..+..+..... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~------------ 165 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL------------ 165 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH------------
Confidence 44444555443 6778888888888766 3332 22221111100 0 0000
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE--NLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
......+...+.+.|++++|...++...+. +.+.....+..+..++...|++++|..+++.+...
T Consensus 166 --~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 --AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 001123445566777777777777776543 22334556667777777777777777776666543
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=1.6e-07 Score=82.39 Aligned_cols=220 Identities=16% Similarity=0.099 Sum_probs=170.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 015811 114 PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVV 193 (400)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 193 (400)
|-...=..+...+...|-...|+.+++++. .|...+.+|...|+..+|..+..+..+. +|+..
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ 458 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPR 458 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcch
Confidence 333344556777888899999999988764 4667788899999999999888887763 67888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015811 194 TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273 (400)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (400)
.|..+........-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAAL 530 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence 8888888777777788888888765432 12222223344788999999998877765 556778888888888
Q ss_pred cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHH
Q 015811 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALK 353 (400)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 353 (400)
+.++++.|.+.|....... +.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|++
T Consensus 531 qlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 9999999999999888764 5567789999999999999999999999998876 3366677777788888999999999
Q ss_pred HHHHHhh
Q 015811 354 LFVEMQG 360 (400)
Q Consensus 354 ~~~~~~~ 360 (400)
.+.++..
T Consensus 609 A~~rll~ 615 (777)
T KOG1128|consen 609 AYHRLLD 615 (777)
T ss_pred HHHHHHH
Confidence 9988773
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.7e-05 Score=67.26 Aligned_cols=318 Identities=14% Similarity=0.080 Sum_probs=185.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015811 51 ILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 130 (400)
Q Consensus 51 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 130 (400)
+=++.+...|++++|.+...+++..+ +.+...+..=+-+....+++++|+.+.+.-... ..+...+-.-.-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 33456677899999999999999886 446677777777888999999999665543211 111111112233445789
Q ss_pred ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--------------------
Q 015811 131 HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP-------------------- 190 (400)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------- 190 (400)
..++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+.+-
T Consensus 94 k~Dealk~~~~~~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLD----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred cHHHHHHHHhccc----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence 9999999998322 2344567777888999999999999999985443210
Q ss_pred -------ChHhHHHHH---HHHHhcCCHHHHHHHHHHHHHCC-------CCCCc-------ccHHHHHHHHHhcCCchhH
Q 015811 191 -------NVVTYTSLI---HGFCHANDWNEAKGLLIEMVDQG-------VQPNV-------VSSNVIMNELCKNGKMDNA 246 (400)
Q Consensus 191 -------~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~~~~~~a 246 (400)
...+|..+. -.+...|++.+|+++++.....+ -..+. ..-..+..++...|+-++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 112333333 33456799999999999883221 00001 1122345567789999999
Q ss_pred HHHHHHHHhCCCCCcHHHH----HHHHHHHHcCCChHH--------------HHHHHHH---------------------
Q 015811 247 SRLLDLMVQCDVRPNAFTY----NTLMDGFCLTGKINR--------------VKELFVS--------------------- 287 (400)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~--------------a~~~~~~--------------------- 287 (400)
..++...++.. ++|.... |.|+.. ....++-. +......
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988876 4444222 222211 11111000 0000000
Q ss_pred -------H-Hhc-CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHhhhhhCCCCcCH--HHHHHHHHHHhccchHHHHHHH
Q 015811 288 -------M-ESM-GCKHDDFSYNILINGYCK--NKEVEEALSLYNELPFKGIKPTV--VTYNTLFHGLFEIRQAERALKL 354 (400)
Q Consensus 288 -------~-~~~-~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 354 (400)
. ... +..| ...+..++..+.+ ......|..++...-+. .|.. ...-..+......|+++.|+++
T Consensus 322 k~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0 000 1112 2233344433322 22466677777766655 3333 3444556677889999999999
Q ss_pred HH--------HHhhCCCCCChhhHHHHHHHhhcCCcchhhHh
Q 015811 355 FV--------EMQGNDVAADTCTYRTFIDGLCVRPQVRFTYA 388 (400)
Q Consensus 355 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 388 (400)
+. .+.+.+..|- +...++..+.+.++-+.|-.
T Consensus 399 l~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~ 438 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASA 438 (652)
T ss_pred HHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHH
Confidence 98 5555555444 44455555666665554433
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=2.8e-06 Score=75.98 Aligned_cols=230 Identities=13% Similarity=0.087 Sum_probs=154.4
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-c-------C-CccHHHHHHHHHH
Q 015811 20 CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS-C-------F-APNVVTFTSLIKG 90 (400)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~ 90 (400)
.|...|+.+.|.+-.+.+. +...|..+...|.+..+++-|.-.+..|... | . .|+ ..=......
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 3566788888877766654 5568999999999999988888777666532 1 1 121 222233334
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE 170 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (400)
....|..++|+.+|++.++. ..|-..|-..|++++|.++-+.-.... -..||......+-..
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhh
Confidence 45779999999999998754 345566777899999998876533321 234666677777778
Q ss_pred CChHHHHHHHHHHH----------HcC---------CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 015811 171 GFVDKAKELFLQMK----------YEN---------LNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSN 231 (400)
Q Consensus 171 ~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 231 (400)
++.+.|++.|++.. ... -..|...|......+-..|+.+.|+.++..... |.
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 88888888887632 110 112444555555555666777777777765543 34
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811 232 VIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 232 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
.+++..|-.|+.++|.++-++- -|....-.|.+.|-..|++.+|..+|.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5566667778888777765542 355666678888888899888888887764
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.4e-06 Score=67.35 Aligned_cols=159 Identities=12% Similarity=0.044 Sum_probs=107.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811 85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII 164 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 164 (400)
..+-..+.-.|+-+....+........ +.+......++....+.|++.+|+..+++..... ++|...|+.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------p~d~~~~~~lg 141 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------PTDWEAWNLLG 141 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------CCChhhhhHHH
Confidence 445566666677666666666644321 3344555567777777777777777777777764 67777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811 165 DGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD 244 (400)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (400)
-+|.+.|+++.|..-|.+..+... -+....+.+.-.+.-.|+.+.|..++......+ .-|...-..+..+....|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 777777777777777777776532 245566677777777777777777777777654 335566666777777777777
Q ss_pred hHHHHHHHH
Q 015811 245 NASRLLDLM 253 (400)
Q Consensus 245 ~a~~~~~~~ 253 (400)
+|..+...-
T Consensus 220 ~A~~i~~~e 228 (257)
T COG5010 220 EAEDIAVQE 228 (257)
T ss_pred HHHhhcccc
Confidence 777766543
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=3.9e-07 Score=80.13 Aligned_cols=239 Identities=15% Similarity=0.046 Sum_probs=186.3
Q ss_pred CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
+.||--..-..+...+...|-...|+.+|+++. .|..++.+|...|+..+|..+..+-.+. +|+...|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 344555566677888899999999999998875 3677788999999999999999888884 78999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID 165 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (400)
.+.++.....-+++|.++.+..... +-..+.....+.+++.++.+.|+.-...+ +....+|-.+..
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-------plq~~~wf~~G~ 527 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-------PLQLGTWFGLGC 527 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-------ccchhHHHhccH
Confidence 9999988888888898888765432 22233333445789999999999888775 567788888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh
Q 015811 166 GLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN 245 (400)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (400)
+..+.++++.|.+.|....... +-+...|+++-.+|.+.++-.+|...+.+..+.+ .-+...+...+....+.|.++.
T Consensus 528 ~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHH
Confidence 9999999999999999887642 3356889999999999999999999999999876 4456677777778889999999
Q ss_pred HHHHHHHHHhCC-CCCcHHHHHHHHHH
Q 015811 246 ASRLLDLMVQCD-VRPNAFTYNTLMDG 271 (400)
Q Consensus 246 a~~~~~~~~~~~-~~~~~~~~~~l~~~ 271 (400)
|.+.+..+.... ...|..+...++..
T Consensus 606 a~~A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 606 AIKAYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHHHHHHHhhhhcccchhhHHHHHH
Confidence 999998875432 11244444444443
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=1.6e-06 Score=67.12 Aligned_cols=116 Identities=9% Similarity=0.077 Sum_probs=53.9
Q ss_pred CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHH
Q 015811 242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGY-CKNKE--VEEALS 318 (400)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~ 318 (400)
+.+++...++...+.+ +.+...|..+...|...|+++.|...+++..+.. +.+...+..+..++ ...|+ .++|..
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444444433 3344455555555555555555555555554443 23444444444432 33343 255555
Q ss_pred HHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 319 LYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
++++..+.+.. +...+..+...+...|++++|+..|+++.+
T Consensus 132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555444221 334444444445555555555555555544
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=6.1e-06 Score=63.98 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811 208 WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ 255 (400)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (400)
..+|.-+|++|-+. .+|+..+.+-.+.++...|++++|..+++....
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34444444444332 233333344444444444444444444444433
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=1.7e-06 Score=69.80 Aligned_cols=187 Identities=9% Similarity=-0.055 Sum_probs=132.8
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC-c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---h
Q 015811 44 PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA-P-NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVI---T 118 (400)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 118 (400)
.....+..+...+...|+++.|...++++....+. | ....+..+..++...|++++|...++++.+.. +.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 35677888888999999999999999999886422 1 12467778899999999999999999999764 22222 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 015811 119 YNTLINGLCRT--------GHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP 190 (400)
Q Consensus 119 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 190 (400)
+..+..++... |+.++|.+.++.+.... +.+...+..+..... ... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~----~~~------~~~------ 166 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDY----LRN------RLA------ 166 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHH----HHH------HHH------
Confidence 55555556554 77899999999998764 222233322221111 000 000
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811 191 NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGV--QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC 256 (400)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (400)
.....+...+.+.|++.+|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1122456678899999999999999987632 223467888999999999999999999988765
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=2.3e-06 Score=66.18 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=123.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 015811 156 NTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMN 235 (400)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 235 (400)
|... ..+-..+...|+-+....+....... .+.|......++....+.|++..|...+.+..... ++|...++.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3444 55666777778888777777775533 23355556667888888888888888888887764 678888888888
Q ss_pred HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 015811 236 ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEE 315 (400)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 315 (400)
+|.+.|+++.|..-|.+..+.. +-++..++.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 8888888888888888888764 4456777888888888888888888888887764 3366677778888888888888
Q ss_pred HHHHHhhhh
Q 015811 316 ALSLYNELP 324 (400)
Q Consensus 316 A~~~~~~~~ 324 (400)
|..+...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 888776544
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=5.3e-06 Score=77.13 Aligned_cols=235 Identities=10% Similarity=0.084 Sum_probs=135.7
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
.|.+..+|..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++.+++.-+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 3567788889999998999999999999877665 343 34444444466666665544433
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID 165 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (400)
.++.......++.-...+...+.+. .-+..++..+..+|-+.|+.++|..+++++.+.. +-|+.+.|.+..
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY 158 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLAT 158 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHH
Confidence 2333333333443333333344433 2233456666667777777777777777776654 456666677776
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH---H--HhcCCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHh
Q 015811 166 GLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHG---F--CHANDWNEAKGLLIEMVDQ-GVQPNVVSSNVIMNELCK 239 (400)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 239 (400)
.|... +.++|.+++.+....-+ +..-|+.+... + ....+.+.-..+.+.+..+ +..--..++..+...|-.
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence 66666 77777776666654311 11111111110 0 1112233333333443333 222234455566677778
Q ss_pred cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015811 240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273 (400)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (400)
..+++++..+++.+.+.. +.+.....-++.+|.
T Consensus 236 ~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 888888888888888876 446666777777665
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=6.1e-07 Score=69.39 Aligned_cols=119 Identities=11% Similarity=0.107 Sum_probs=99.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH-HhcCC--HHHHH
Q 015811 25 KHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL-CAESR--IVEAA 101 (400)
Q Consensus 25 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~ 101 (400)
++.++++..++...+.+ +.+...|..+...|...|+++.|...|++..+..+ .+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34456666666666554 66889999999999999999999999999999863 3778888888764 67777 59999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 102 ALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
+++++..+.+ +.+..++..+...+...|++++|+..++++.+..
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999886 5577888999999999999999999999999875
No 117
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=4.8e-05 Score=69.99 Aligned_cols=212 Identities=15% Similarity=0.176 Sum_probs=151.4
Q ss_pred HHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015811 126 LCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA 205 (400)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (400)
+...+-+++|..+|++. ..+....+.++.- -+..+.|.++-++.. .+..|..+..+-.+.
T Consensus 1058 ai~~~LyEEAF~ifkkf-----------~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----------DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HhhhhHHHHHHHHHHHh-----------cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhc
Confidence 33444556666666553 2333344444432 244555555444332 456788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHH
Q 015811 206 NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELF 285 (400)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 285 (400)
|...+|++-|-+. .|+..|..++....+.|.+++..+.+....+..-.|. .=..|+-+|++.++..+.+.++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh
Confidence 9888888776432 3677899999999999999999999988877654444 3457888899998877655543
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCC
Q 015811 286 VSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAA 365 (400)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 365 (400)
..||......+.+-|...|.++.|.-+|. ++..|..|...+...|++..|...-++.-
T Consensus 1190 -------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1190 -------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred -------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 25788888889999999999999988875 45568888888999999999887766542
Q ss_pred ChhhHHHHHHHhhcCCcchhhH
Q 015811 366 DTCTYRTFIDGLCVRPQVRFTY 387 (400)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~ 387 (400)
+..||..+-.+|...+.+.-|.
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHH
Confidence 5568988888888888777653
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=1.5e-08 Score=52.83 Aligned_cols=32 Identities=50% Similarity=1.071 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811 292 GCKHDDFSYNILINGYCKNKEVEEALSLYNEL 323 (400)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 323 (400)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555544444
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=9.5e-09 Score=53.55 Aligned_cols=33 Identities=45% Similarity=0.769 Sum_probs=26.2
Q ss_pred CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 327 GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 327 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
|+.||..+|+.||.+|++.|+.++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887763
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=5e-06 Score=75.95 Aligned_cols=166 Identities=12% Similarity=0.041 Sum_probs=114.4
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC-ccHHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA-PNVVTFTSLI 88 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 88 (400)
=..+|..|...|....+...|...|+...+.+ ..+...+......|++..+++.|..+.-..-+.... .-...|....
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 34577788888887778888888888887765 457778888888888888888888873333222110 0112233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh-hhHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT-VTYSIIIDGL 167 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 167 (400)
-.|.+.++...|..-|+...+.. +.|...|..+..+|.+.|++..|+++|.++.... |+. ..---..-.-
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--------P~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--------PLSKYGRFKEAVME 640 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--------cHhHHHHHHHHHHH
Confidence 45667788888888888877665 5577888899999999999999999998887643 332 2212222334
Q ss_pred HhcCChHHHHHHHHHHHH
Q 015811 168 CKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~ 185 (400)
+..|.+.++...+.....
T Consensus 641 cd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 567888888888777654
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=5.8e-06 Score=64.10 Aligned_cols=88 Identities=24% Similarity=0.115 Sum_probs=40.7
Q ss_pred HHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHH----cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 015811 235 NELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC----LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN 310 (400)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 310 (400)
..+.+..+++-|.+.++.|.+.+ +..+++.|..++. ..+.+.+|..+|+++.+.- +|+..+.+....++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHh
Confidence 33444444555555555554421 3334443333332 1233445555555554421 44555555555555555
Q ss_pred CCHHHHHHHHhhhhhC
Q 015811 311 KEVEEALSLYNELPFK 326 (400)
Q Consensus 311 ~~~~~A~~~~~~~~~~ 326 (400)
|++++|..++++...+
T Consensus 221 ~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDK 236 (299)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 5555555555555444
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=1.1e-05 Score=74.19 Aligned_cols=135 Identities=10% Similarity=0.068 Sum_probs=85.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 122 (400)
+.+...+..|.....+.|.+++|..+++.+.+.. +.+......+..++.+.+++++|...+++..... +-+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3346666666666666777777777777766653 2245555666666667777777777777666653 3344555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 015811 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE 186 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 186 (400)
..++...|++++|..+|+++...+ +.+..++..+...+...|+.++|...|+...+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666777777777777766532 344566666666666677777777777666654
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=1.5e-06 Score=79.77 Aligned_cols=137 Identities=11% Similarity=0.036 Sum_probs=121.9
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.|.++.++-.|.....+.|.+++|..+++...+.. +.+......+...+.+.+++++|...+++..+..+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 45678999999999999999999999999999874 446778888999999999999999999999998633 7778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
+..++...|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999843 4557899999999999999999999999998765
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=2e-05 Score=73.40 Aligned_cols=239 Identities=10% Similarity=0.022 Sum_probs=144.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+...+..|+..+...+++++|.++.+...+..+. ....|..+...+...++...+..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 4567788888888888888888888866665321 333333344455566654444333 2333
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811 125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH 204 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (400)
......++.....+...+... .-+...+..+..+|-+.|+.+++..+|+++.+.. +-|..+.+.+...|..
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 333334443334444444442 3455577888888889999999999999998876 4477888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHH
Q 015811 205 ANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKEL 284 (400)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 284 (400)
. ++++|..++.+.... +...+++..+.++|.++.... +.+...+..+.+.....
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~--------- 216 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGH--------- 216 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhh---------
Confidence 8 889988888877654 555667777777777776653 22222222222211111
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHh
Q 015811 285 FVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLF 343 (400)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 343 (400)
.+..--..++-.+-..|...++|+++..+++.+.+.... |.....-++.+|.
T Consensus 217 ------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 ------REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ------hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 011223344555556666677777777777777765322 4444555555543
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=1.2e-06 Score=64.06 Aligned_cols=92 Identities=11% Similarity=-0.068 Sum_probs=43.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR 96 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (400)
+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+.....+ +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444444555555555555544433 2344444444445555555555555555554433 2244444444444445555
Q ss_pred HHHHHHHHHHHHHc
Q 015811 97 IVEAAALFTKLKAF 110 (400)
Q Consensus 97 ~~~a~~~~~~~~~~ 110 (400)
+++|...|+...+.
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=1.5e-06 Score=63.62 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=94.2
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 31 LSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 31 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
..+|++..+. .|+ .+......+...|++++|...|+...... +.+...|..+..++...|++++|...|++..+.
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4566666654 244 35567888899999999999999999875 448889999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 111 GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
. +.+...+..+..++...|+.++|+..|+......
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5 6688899999999999999999999999998864
No 127
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=5.2e-05 Score=68.33 Aligned_cols=217 Identities=15% Similarity=0.110 Sum_probs=146.4
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhC-CC--------CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSI-GL--------FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN 80 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 80 (400)
+-..|..+...|.+.++++-|.-.+-.|... |. .|+ ..-....-.....|-+++|..+|++..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 4568999999999999999888777666432 11 122 22223333456789999999999988763
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccc----------
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIG---------- 150 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------- 150 (400)
..|=+.|-..|.+++|.++-+.--+.. =-.||.....-+-..++.+.|++.|++.....-+..
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 334456667899999988766533222 224566666666677888888888776432211000
Q ss_pred ---ccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 015811 151 ---VVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV 227 (400)
Q Consensus 151 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 227 (400)
..-..|...|.-....+-..|+.+.|+.+|....+ |-.+++..+-.|+.++|-.+-++ .| |.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---SG---DK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---cc---cH
Confidence 00122445566666666677888888888877653 45666777788999999887653 22 56
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 228 VSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
.....+.+.|-..|++.+|..+|.+..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667778899999999999999887653
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=6.8e-05 Score=57.94 Aligned_cols=188 Identities=12% Similarity=0.053 Sum_probs=130.4
Q ss_pred cCChHHHHHHHHHHHHc---C-CCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811 170 EGFVDKAKELFLQMKYE---N-LNPNV-VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD 244 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (400)
..+.++..+++..+... | ..++. ..|..++-+....|+.+.|...++.+...- +-+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35667777777777643 3 33444 345566667777888889999888888763 334444333344456788899
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 245 NASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
+|+++++.+.+.+ +.|..++-.=+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999888876 556666665555556677777787777777664 36688899999999999999999999999887
Q ss_pred hCCCCcCHHHHHHHHHHHhccc---hHHHHHHHHHHHhhC
Q 015811 325 FKGIKPTVVTYNTLFHGLFEIR---QAERALKLFVEMQGN 361 (400)
Q Consensus 325 ~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 361 (400)
-.. +.++..+..+...+.-.| +..-+.++|.+.++.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 652 235555666666554433 566778888887764
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=8.5e-05 Score=62.96 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=50.0
Q ss_pred hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcC
Q 015811 128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPN-VVTYTSLIHGFCHAN 206 (400)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 206 (400)
..|++++|+..++.+.... |-|...+......+.+.++..+|.+.++++... .|+ ......+..++.+.|
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-------PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 4444555555555544432 333444444444455555555555555554443 222 333334444445555
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811 207 DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA 246 (400)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 246 (400)
++.+|..+++...... +.|+..|..|.++|...|+..++
T Consensus 389 ~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 389 KPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred ChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH
Confidence 5555555554444432 33444455555555554444443
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.62 E-value=3.8e-06 Score=61.14 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=68.2
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015811 33 LFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGC 112 (400)
Q Consensus 33 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 112 (400)
.|++..... +.+......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344444432 2234445555666666777777777777766654 3355666666677777777777777777666554
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811 113 EPNVITYNTLINGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 113 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
+.+...+..+...+...|++++|...|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445556666666677777777777777766664
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.62 E-value=1.9e-06 Score=62.74 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=92.7
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
|.+......+...+.+.|++++|.+.|+.+...+ +.+...+..+..++...|++++|...++...+.+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 4456677788889999999999999999998876 5588899999999999999999999999998875 4467788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYN 120 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 120 (400)
..++...|++++|...|+...+. .|+...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 89999999999999999999987 45554443
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.00018 Score=55.74 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=34.4
Q ss_pred cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH
Q 015811 129 TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDW 208 (400)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (400)
.|++++|+++++.+.+.+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++
T Consensus 99 ~~~~~~A~e~y~~lL~dd-------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred hhchhhHHHHHHHHhccC-------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHH
Confidence 344444444444444433 333333333333333334444444444333332 223444444444444444444
Q ss_pred HHHHHHHHHHH
Q 015811 209 NEAKGLLIEMV 219 (400)
Q Consensus 209 ~~a~~~~~~~~ 219 (400)
++|.-.++++.
T Consensus 171 ~kA~fClEE~l 181 (289)
T KOG3060|consen 171 EKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 133
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.52 E-value=0.00018 Score=64.33 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=28.5
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHH
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPDL-YTYSILINCFCKMGQVSLGFVIF 69 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~ 69 (400)
....|+++.|...++.... .|+. ..|..+.......|++--|...|
T Consensus 454 aid~~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred ccccCchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4567899999998887653 3554 45666665555555544444433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=0.00013 Score=61.91 Aligned_cols=116 Identities=15% Similarity=0.079 Sum_probs=53.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811 93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF 172 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (400)
..|++++|+..++.+++.- +-|+..+......+.+.++..+|.+.++++.... +......-.+..++.+.|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-------P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-------PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCccHHHHHHHHHHHhcCC
Confidence 4455555555555544431 2233333333444555555555555555554432 1123344444455555555
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 173 VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIE 217 (400)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (400)
+.+|+.+++...... +-|...|..|.++|...|+..++..-..+
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 555555555444332 23444555555555555555444444433
No 135
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.48 E-value=7.3e-05 Score=68.73 Aligned_cols=136 Identities=13% Similarity=0.075 Sum_probs=99.7
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
.|.+..++....+.|++..+++.|..+.-..-+.. ...-...|....-.|...++...|...|+...+..+. |...|.
T Consensus 522 Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~ 600 (1238)
T KOG1127|consen 522 DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWL 600 (1238)
T ss_pred CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHH
Confidence 35678889999999999999999999833322211 0011233445556677889999999999999988644 889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNV-ITYNTLINGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
.+..+|.+.|++..|.++|.+.... .|+. ..-.-....-+..|.+.+|+..+..+...
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998865 3432 22222333455688899998888776543
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=2.1e-05 Score=57.84 Aligned_cols=127 Identities=12% Similarity=0.030 Sum_probs=97.5
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc--HHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN--VVTFTS 86 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 86 (400)
..|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++ ......
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4566777766 4899999999999998864 333 23445566788899999999999999999763333 234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEM 142 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 142 (400)
+..++...|++++|+..++..... ......+......+.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999999775433 334556777889999999999999999864
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.44 E-value=1.9e-05 Score=67.23 Aligned_cols=124 Identities=16% Similarity=0.158 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHc
Q 015811 195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCL 274 (400)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (400)
...++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++++..+.. +.+...+..-...+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555555667777777777776653 22 34456666666667777777777766543 4455566666666777
Q ss_pred CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 275 TGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 275 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
.++++.|..+.+++.+.. |-+-.+|..|..+|...|+++.|+..+..+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777653 3334477777777777777777777776654
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=3e-05 Score=57.01 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=50.7
Q ss_pred cCCchhHHHHHHHHHhCCCCCc---HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHH
Q 015811 240 NGKMDNASRLLDLMVQCDVRPN---AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD--DFSYNILINGYCKNKEVE 314 (400)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 314 (400)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 444555555555554432 111 11122233444555555555555555554431111 112223444455555555
Q ss_pred HHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHH
Q 015811 315 EALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVE 357 (400)
Q Consensus 315 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 357 (400)
+|+..++..... ......+......+.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443322 12233344444455555555555555543
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=2.1e-05 Score=66.96 Aligned_cols=125 Identities=18% Similarity=0.145 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811 83 TFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI 162 (400)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
....|+..+...++++.|..+|+++.+.. |+ ....++..+...++..+|.+++++..... +.+......
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-------p~d~~LL~~ 239 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-------PQDSELLNL 239 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 34455666666777777777777777552 33 34456666666777777777777777543 445556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 163 IIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMV 219 (400)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 219 (400)
....+.+.++++.|+++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666777777777777777777652 2244577777777777777777777776543
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.36 E-value=8.7e-07 Score=46.61 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=26.0
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFP 44 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 44 (400)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888777766
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.35 E-value=9.7e-07 Score=46.81 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=27.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD 45 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 45 (400)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888887776
No 142
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.30 E-value=2e-05 Score=67.36 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC--CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHH
Q 015811 224 QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC--DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYN 301 (400)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 301 (400)
+.+......++..+....+.+.+..++.+.... ....-+.|..++++.|...|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555555443 111222344455566666666666666665555566666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc
Q 015811 302 ILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE 344 (400)
Q Consensus 302 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 344 (400)
.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666655555544444444444444444433
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.28 E-value=2.6e-05 Score=66.69 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAF--GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT 157 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 157 (400)
+......+++.+....+.+.+..++.+.+.. ....-..|..++++.|...|..++++.+++.=...| +-||.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG------iF~D~ 138 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG------IFPDN 138 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc------cCCCh
Confidence 3334444444444444455555555444432 111122333455555555555555555555444444 44555
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 015811 158 VTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFC 203 (400)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (400)
.+++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555555544444433333344443333333
No 144
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.27 E-value=2.1e-05 Score=52.51 Aligned_cols=77 Identities=18% Similarity=0.374 Sum_probs=51.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcC--------ChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYSILINCFCKMG--------QVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345566667788888888888887777 777888887777766542 23345566666666666666666666
Q ss_pred HHHHHH
Q 015811 87 LIKGLC 92 (400)
Q Consensus 87 l~~~~~ 92 (400)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665543
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.27 E-value=0.0034 Score=57.61 Aligned_cols=107 Identities=12% Similarity=0.164 Sum_probs=60.6
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHH
Q 015811 22 AKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINC--FCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVE 99 (400)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (400)
...+++.+|++....+.+. .|+.. |..++.+ +.+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3455666666666666554 23322 2222332 34566666666666665554433 56666666666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 015811 100 AAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIV 134 (400)
Q Consensus 100 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 134 (400)
|..+|++.... .|+......+..+|.+.+++.+
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 66666666654 4555555556666666555543
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.2e-06 Score=45.42 Aligned_cols=33 Identities=45% Similarity=0.684 Sum_probs=17.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC
Q 015811 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD 366 (400)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 366 (400)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555554
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=8.3e-05 Score=52.60 Aligned_cols=100 Identities=10% Similarity=-0.044 Sum_probs=76.6
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--ccHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLF--PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PNVVTFTSL 87 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 87 (400)
.++..++..+.+.|++++|.+.|+.+...... .....+..+..++.+.|+++.|.+.|+.+....+. ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788888899999999999998765311 12456777888889999999999999988875322 124567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFG 111 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~ 111 (400)
..++...|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888888999999999999988774
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.21 E-value=0.0046 Score=56.81 Aligned_cols=200 Identities=15% Similarity=0.152 Sum_probs=134.1
Q ss_pred HHHHHHH--HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811 14 FNILLGC--LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL 91 (400)
Q Consensus 14 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++..+. .|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 3344444 45789999999999988766533 8889999999999999999999999999987 46688888888999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-C---------hHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG-H---------TIVALNLFKEMTNGNGEIGVVFKPNTVTYS 161 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
.+.+.+.+-.+.--++.+. .+-....+-++++.+.... . ..-|.+.++.+.+.++ .-.+..-..
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-----k~~s~aE~~ 194 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-----KIESEAEII 194 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-----ccchHHHHH
Confidence 9998877655554444443 2445555555655554322 1 1235556666665442 111222233
Q ss_pred HHHHHHHhcCChHHHHHHHHH-HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015811 162 IIIDGLCKEGFVDKAKELFLQ-MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG 222 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 222 (400)
.....+...|++++|.+++.. ..+.-...+...-+.-+..+...++|.+..++..++...|
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 344556677889999999843 3333223334444456667777788888888888888775
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.19 E-value=4e-06 Score=44.02 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015811 82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEP 114 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 114 (400)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.17 E-value=5.7e-05 Score=50.85 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=62.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC 92 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
++..+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 34556666677777777777777776653 3344566666677777777777777777766654 224456666666777
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 015811 93 AESRIVEAAALFTKLKAF 110 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~ 110 (400)
..|+++.|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 777777777777666543
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.16 E-value=0.00011 Score=55.92 Aligned_cols=86 Identities=7% Similarity=0.008 Sum_probs=48.9
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
....|..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++..+... .+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 444556666666666667777666666654332221 34566666666666666666666666666432 234445555
Q ss_pred HHHHHhcCC
Q 015811 88 IKGLCAESR 96 (400)
Q Consensus 88 ~~~~~~~~~ 96 (400)
..++...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 555555554
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=0.00015 Score=51.25 Aligned_cols=100 Identities=14% Similarity=-0.003 Sum_probs=80.7
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHH
Q 015811 47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE--PNVITYNTL 122 (400)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 122 (400)
.++..+...+.+.|++++|.+.|+.+.+.... .....+..+..++...|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677788889999999999999999876422 12456677899999999999999999999875311 124567788
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCC
Q 015811 123 INGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
..++...|+.++|...++++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999999998865
No 153
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.13 E-value=0.0045 Score=53.64 Aligned_cols=175 Identities=9% Similarity=0.038 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCC-cHHHHHHHHHHHHcCCChHHHHHHHH
Q 015811 208 WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRP-NAFTYNTLMDGFCLTGKINRVKELFV 286 (400)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 286 (400)
.+.....+++++..-..--.-+|-..+....+..-++.|..+|.++.+.+..+ +..+.++++..++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566666666654322233567777888888889999999999999988776 6677788887665 678899999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC--HHHHHHHHHHHhccchHHHHHHHHHHHhhC---
Q 015811 287 SMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT--VVTYNTLFHGLFEIRQAERALKLFVEMQGN--- 361 (400)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 361 (400)
.-.+.- ..++..-...+..+...++-..|..+|++....++.|+ ...|..++..-..-|+...+.++-+++...
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 876642 34455556778888899999999999999998865554 468999999888999999999988876532
Q ss_pred CCCCChhhHHHHHHHhhcCCcch
Q 015811 362 DVAADTCTYRTFIDGLCVRPQVR 384 (400)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~g~~~ 384 (400)
...+....-..+++.|.-.+.+.
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 13333344455666666555544
No 154
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.12 E-value=0.004 Score=52.76 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=60.7
Q ss_pred CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
..|.|..+|-.|+..+..++.+++..+++++|..- .+-=..+|...+..-...+++.....+|.+.+.... +...|.
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 35789999999999999999999999999999753 122345677777776777788888888888777633 344444
Q ss_pred HHHH
Q 015811 86 SLIK 89 (400)
Q Consensus 86 ~l~~ 89 (400)
..+.
T Consensus 114 lYl~ 117 (660)
T COG5107 114 LYLE 117 (660)
T ss_pred HHHH
Confidence 4443
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.10 E-value=7.2e-05 Score=50.34 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=38.7
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchH
Q 015811 269 MDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQA 348 (400)
Q Consensus 269 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 348 (400)
...+...|++++|...++++.+.. +.+...+..+..++...+++++|...++...... +.+...+..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 333444444444444444444332 2222334444444444455555555544444332 11223344444444445555
Q ss_pred HHHHHHHHHHh
Q 015811 349 ERALKLFVEMQ 359 (400)
Q Consensus 349 ~~a~~~~~~~~ 359 (400)
++|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.09 E-value=8.9e-05 Score=53.57 Aligned_cols=100 Identities=9% Similarity=-0.092 Sum_probs=74.3
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+......+...+...|++++|.++|+.+....+. +...|-.|.-++-..|++.+|+..|....... +-++..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3344555566667788888888888887776432 66667777788888888888888888887776 456777777888
Q ss_pred HHHhcCChHHHHHHHHHHHcCC
Q 015811 125 GLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
++...|+.+.|.+.|+......
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888888888888776664
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.07 E-value=0.0002 Score=61.20 Aligned_cols=101 Identities=8% Similarity=0.002 Sum_probs=82.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES 95 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (400)
.-...+...|++++|++.|+++.+.. +.+...|..+..++...|+++.|+..++.+++... .+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 34566778899999999999998876 45778888889999999999999999999998753 36778888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHH
Q 015811 96 RIVEAAALFTKLKAFGCEPNVITYN 120 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~~~~~~~ 120 (400)
++++|...|++..+.. |+.....
T Consensus 85 ~~~eA~~~~~~al~l~--P~~~~~~ 107 (356)
T PLN03088 85 EYQTAKAALEKGASLA--PGDSRFT 107 (356)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHH
Confidence 9999999999998863 4443333
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.06 E-value=0.00012 Score=48.97 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhccC-CccHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhh
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSCF-APNVVTFTSLIKGLCAES--------RIVEAAALFTKLKAFGCEPNVIT 118 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 118 (400)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345566677778999999999999999999 899999999998877653 34567889999999999999999
Q ss_pred HHHHHHHHHh
Q 015811 119 YNTLINGLCR 128 (400)
Q Consensus 119 ~~~l~~~~~~ 128 (400)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.06 E-value=0.00017 Score=61.70 Aligned_cols=90 Identities=13% Similarity=-0.015 Sum_probs=51.7
Q ss_pred HHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 015811 235 NELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVE 314 (400)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 314 (400)
..+...|+++.|...|..+++.. +.+...+..+..+|...|++++|...++++.+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34445566666666666665544 3345555555556666666666666666665554 334555555666666666666
Q ss_pred HHHHHHhhhhhC
Q 015811 315 EALSLYNELPFK 326 (400)
Q Consensus 315 ~A~~~~~~~~~~ 326 (400)
+|...|++..+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 666666665554
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.04 E-value=0.00021 Score=51.72 Aligned_cols=87 Identities=11% Similarity=-0.030 Sum_probs=40.5
Q ss_pred HHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHH
Q 015811 271 GFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAER 350 (400)
Q Consensus 271 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 350 (400)
.+...|++++|..+|+.+...+ +.+..-|-.|..++-..|++++|+..|.......+. |+..+-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHH
Confidence 3344455555555555544443 233444444444444555555555555544443321 34444444444555555555
Q ss_pred HHHHHHHHh
Q 015811 351 ALKLFVEMQ 359 (400)
Q Consensus 351 a~~~~~~~~ 359 (400)
|.+.|+..+
T Consensus 122 A~~aF~~Ai 130 (157)
T PRK15363 122 AIKALKAVV 130 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.04 E-value=0.00018 Score=59.24 Aligned_cols=128 Identities=9% Similarity=0.033 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-HHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015811 230 SNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-FCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC 308 (400)
Q Consensus 230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (400)
|..++...-+.+..+.|..+|.+..+.+ ..+..+|...+.. +...++.+.|..+|+...+. .+.+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 3334444444444555555555544322 2222333333222 12233444455555554443 2334444445555555
Q ss_pred hcCCHHHHHHHHhhhhhCCCCcCH---HHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 309 KNKEVEEALSLYNELPFKGIKPTV---VTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 309 ~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
..|+.+.|..+|++.... +.++. ..|..++..=.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555554433 11111 2444444444445555555555554443
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.04 E-value=2e-05 Score=51.70 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=38.7
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811 24 NKHYDTVLSLFKRLNSIGLF-PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA 102 (400)
Q Consensus 24 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
+|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566666666665554311 1233344455556666666666666655 22221 122333334555556666666655
Q ss_pred HHHH
Q 015811 103 LFTK 106 (400)
Q Consensus 103 ~~~~ 106 (400)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.03 E-value=8.5e-06 Score=41.63 Aligned_cols=30 Identities=20% Similarity=0.485 Sum_probs=23.2
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIG 41 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 41 (400)
.+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367788888888888888888888887765
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.03 E-value=0.00039 Score=62.20 Aligned_cols=139 Identities=12% Similarity=-0.006 Sum_probs=101.0
Q ss_pred CCCCCCcchHHHHHHHHHcc-----CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--------ChhhHHHHHHH
Q 015811 5 HPSPPPVSSFNILLGCLAKN-----KHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG--------QVSLGFVIFGR 71 (400)
Q Consensus 5 ~~~p~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~ 71 (400)
...|.|..+|...+++.... ++...|+.+|++..+.. +-....|..+..++.... +...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34568889999999886542 23779999999999875 334555555544443321 22344444444
Q ss_pred HHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 72 ILRS-CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 72 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
.... ..+.+...|..+.-.....|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++....+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3332 12335577887777777889999999999999988 4688899999999999999999999999998865
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0058 Score=51.18 Aligned_cols=89 Identities=16% Similarity=-0.005 Sum_probs=52.2
Q ss_pred HHhcCCchhHHHHHHHHHhCC---CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 015811 237 LCKNGKMDNASRLLDLMVQCD---VRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEV 313 (400)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (400)
..+.|.+..|.+.|.+.+..+ ..++...|.....+..+.|+..+|+.--++..+.+ +.-...|..-..++...++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777766542 33445556666666667777777777666666542 11122233333455566677
Q ss_pred HHHHHHHhhhhhC
Q 015811 314 EEALSLYNELPFK 326 (400)
Q Consensus 314 ~~A~~~~~~~~~~ 326 (400)
++|.+-+++..+.
T Consensus 338 e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 338 EEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766554
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.01 E-value=2.3e-05 Score=51.33 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=63.4
Q ss_pred cCChhhHHHHHHHHHhccCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 015811 59 MGQVSLGFVIFGRILRSCFA-PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALN 137 (400)
Q Consensus 59 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 137 (400)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ +.+......+..++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999997542 2455666689999999999999999988 4332 2344555566899999999999999
Q ss_pred HHHHH
Q 015811 138 LFKEM 142 (400)
Q Consensus 138 ~~~~~ 142 (400)
.|++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.96 E-value=0.00038 Score=57.33 Aligned_cols=133 Identities=8% Similarity=0.022 Sum_probs=79.4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811 47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG-LCAESRIVEAAALFTKLKAFGCEPNVITYNTLING 125 (400)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (400)
.+|..++....+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777667667777777777776542 2234444444444 22345556677777776655 24566666777777
Q ss_pred HHhcCChHHHHHHHHHHHcCCCcccccccC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 015811 126 LCRTGHTIVALNLFKEMTNGNGEIGVVFKP-NTVTYSIIIDGLCKEGFVDKAKELFLQMKYE 186 (400)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 186 (400)
+...++.+.|..+|++....-. ... ....|..++..=.+.|+.+.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~-----~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLP-----KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSS-----CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777765421 011 2246777777777777777777777776654
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.95 E-value=0.0039 Score=50.12 Aligned_cols=58 Identities=9% Similarity=-0.009 Sum_probs=42.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYE--NLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMV 219 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 219 (400)
.+.+.|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4566678888888888888887764 555566777777888888888888877766554
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.92 E-value=0.00045 Score=52.28 Aligned_cols=109 Identities=10% Similarity=0.008 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cHHHHHHHHHHHHhcCCHHHHHHH
Q 015811 27 YDTVLSLFKRLN-SIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NVVTFTSLIKGLCAESRIVEAAAL 103 (400)
Q Consensus 27 ~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 103 (400)
+..+...+..+. ..+..-....|..+...+...|++++|...|+........+ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444555543 22222234555666666666777777777777776543222 224566667777777777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHH-------hcCChHHHH
Q 015811 104 FTKLKAFGCEPNVITYNTLINGLC-------RTGHTIVAL 136 (400)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~ 136 (400)
+++..... +....++..+...+. ..|++++|+
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence 77766542 223344445555554 566655333
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.91 E-value=0.0018 Score=53.59 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhccCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--h
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSCFA-----PNVVTFTSLIKGLCAESRIVEAAALFTKLKAF----GCEPN--V 116 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~ 116 (400)
.|......|...+++++|.+.|.+....... .-...|.....+|.+. ++++|.+.+++..+. | .++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 4555556666677777777777666432111 1122344444444333 666776666665431 2 111 1
Q ss_pred hhHHHHHHHHHhc-CChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----
Q 015811 117 ITYNTLINGLCRT-GHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP----- 190 (400)
Q Consensus 117 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----- 190 (400)
.++..+...|... |++++|++.|++..+.....+. ...-...+..+...+.+.|++++|.++|++........
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 2344445555555 6666666666665442100000 01112334455555666666666666666655432111
Q ss_pred ChH-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 191 NVV-TYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 191 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
+.. .+...+-++...|+...|...+++....
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 111 1222233444455666666666555443
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.90 E-value=0.00048 Score=52.15 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEP--NVITYNTLINGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
+..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..+++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444444455555555555444331111 1123444444444555555555555444433
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.87 E-value=0.00087 Score=50.92 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCCCCc--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015811 231 NVIMNELCKNGKMDNASRLLDLMVQCDVRPN--AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC 308 (400)
Q Consensus 231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (400)
..+...+...|++++|...+++..+....+. ...+..+...+...|++++|...+.+..+.. +.+...+..+..++.
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3334444444555555555544443221111 2344455555555555555555555555442 223444444445555
Q ss_pred hcCCH
Q 015811 309 KNKEV 313 (400)
Q Consensus 309 ~~~~~ 313 (400)
..|+.
T Consensus 118 ~~g~~ 122 (172)
T PRK02603 118 KRGEK 122 (172)
T ss_pred HcCCh
Confidence 54443
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.87 E-value=0.0015 Score=45.57 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=77.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cHHHHHHHHH
Q 015811 14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NVVTFTSLIK 89 (400)
Q Consensus 14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 89 (400)
.-.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++......+.+ +......+.-
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 33556777888999999999999998886544 3567778888999999999999999988753220 2223333445
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC 127 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (400)
++...|+.++|.+.+-.... ++...|..-|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 67788999999988876653 23335555555543
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.86 E-value=0.00014 Score=45.42 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=40.8
Q ss_pred cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHH
Q 015811 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTL 338 (400)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 338 (400)
..|++++|..+++.+.+.. +.+...+..+..+|.+.|++++|..+++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4677777777777776664 446666667777777777777777777777765 4554444433
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.86 E-value=0.0094 Score=47.96 Aligned_cols=179 Identities=10% Similarity=0.017 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVT---YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNE 236 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (400)
+-.....+...|++++|.+.|+.+...... +... .-.+..++.+.+++++|...+++..+........-+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 334455566788899999998888875322 1222 235667778888899999888888876322222233333333
Q ss_pred HHh--cC---------------C---chhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC
Q 015811 237 LCK--NG---------------K---MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD 296 (400)
Q Consensus 237 ~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 296 (400)
.+. .+ + ...|...|+.+++ -|-...-..+|...+..+... -
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~----l 174 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR----L 174 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH----H
Confidence 321 11 1 1122233333333 222222233333333333221 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhhhhC--CCCcCHHHHHHHHHHHhccchHHHHHHHHHHH
Q 015811 297 DFSYNILINGYCKNKEVEEALSLYNELPFK--GIKPTVVTYNTLFHGLFEIRQAERALKLFVEM 358 (400)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 358 (400)
...--.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.+....+
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 001114556677777777777777776654 22333445556666777777777776665544
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0015 Score=52.43 Aligned_cols=100 Identities=9% Similarity=0.043 Sum_probs=46.9
Q ss_pred CCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCC---ChHHHHHHHHHHHhcCCCCCHHHHH
Q 015811 225 PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTG---KINRVKELFVSMESMGCKHDDFSYN 301 (400)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~ 301 (400)
-|...|..|..+|...|+.+.|..-|....+.. ++++..+..+..++..+. ...++..+++++...+ +-|.....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 344555555555555555555555555554442 333444444443332221 2334455555555443 33444444
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 302 ILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 302 ~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4445555555555555555555543
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00025 Score=56.50 Aligned_cols=100 Identities=21% Similarity=0.205 Sum_probs=82.0
Q ss_pred HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 015811 236 ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEE 315 (400)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 315 (400)
-..+.+++.+|+..|...++.. +-|...|..=..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 4567889999999999999875 5677778888889999999999998888888875 4457789999999999999999
Q ss_pred HHHHHhhhhhCCCCcCHHHHHHHH
Q 015811 316 ALSLYNELPFKGIKPTVVTYNTLF 339 (400)
Q Consensus 316 A~~~~~~~~~~~~~p~~~~~~~l~ 339 (400)
|.+.|++.++. .|+..+|..=+
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHH
Confidence 99999988875 67777665433
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0015 Score=52.49 Aligned_cols=113 Identities=11% Similarity=0.035 Sum_probs=83.4
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHhhhhhCCCCcCHHHH
Q 015811 259 RPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNK---EVEEALSLYNELPFKGIKPTVVTY 335 (400)
Q Consensus 259 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~ 335 (400)
+-|...|..|...|...|+.+.|..-|.+..+.. ++++..+..+..++.... ...++..+|+++...+. -|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 6678888889999999999999999998888865 567777777777765433 36778888888887642 255666
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015811 336 NTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFID 375 (400)
Q Consensus 336 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (400)
..|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 666778888899999999999988753 33334444444
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=2.7e-05 Score=39.70 Aligned_cols=29 Identities=41% Similarity=0.642 Sum_probs=15.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhCC
Q 015811 334 TYNTLFHGLFEIRQAERALKLFVEMQGND 362 (400)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 362 (400)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555555443
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.80 E-value=9.5e-05 Score=46.14 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=33.6
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 22 AKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
.+.|++++|+++|+.+.... +.+...+..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566677777777766553 335666666666677777777777776666665
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.0018 Score=58.03 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=83.8
Q ss_pred CCCCcccHHHHHHHHHhc--C---CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC--------CChHHHHHHHHHHH
Q 015811 223 VQPNVVSSNVIMNELCKN--G---KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT--------GKINRVKELFVSME 289 (400)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 289 (400)
.+.+...|...+++.... + +...|..+|++..+.+ +-....+..+..++... .+...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345556666666654332 2 2556777777777754 22334444433333211 11223333333333
Q ss_pred hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChh
Q 015811 290 SM-GCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTC 368 (400)
Q Consensus 290 ~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 368 (400)
.. ..+.++..|..+.......|++++|...++++... .|+...|..+...+...|+.++|...+++... +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 32 12345566776766666678888888888887776 46777777777788888888888888887765 344444
Q ss_pred hH
Q 015811 369 TY 370 (400)
Q Consensus 369 ~~ 370 (400)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00039 Score=55.39 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=82.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChH
Q 015811 200 HGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKIN 279 (400)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 279 (400)
.-+.+.+++.+|+..|.+.++.. +-|...|..-..+|++.|.++.|++=.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 34677899999999999999874 4577778888999999999999999999888865 445789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHH
Q 015811 280 RVKELFVSMESMGCKHDDFSYN 301 (400)
Q Consensus 280 ~a~~~~~~~~~~~~~~~~~~~~ 301 (400)
+|.+.|++.++.. |+-.+|-
T Consensus 167 ~A~~aykKaLeld--P~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALELD--PDNESYK 186 (304)
T ss_pred HHHHHHHhhhccC--CCcHHHH
Confidence 9999999999874 5554443
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=0.0015 Score=54.14 Aligned_cols=130 Identities=11% Similarity=0.096 Sum_probs=62.3
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCC-CCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCC-----CcHH
Q 015811 195 YTSLIHGFCHA-NDWNEAKGLLIEMVDQ----GVQ-PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVR-----PNAF 263 (400)
Q Consensus 195 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 263 (400)
+..+...|... |+++.|.+.|++..+. +.+ .-..++..+...+.+.|++++|.++|+++...... .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33344455555 6677777766665532 100 01233455556667777777777777666543211 1111
Q ss_pred -HHHHHHHHHHcCCChHHHHHHHHHHHhcC--CCCC--HHHHHHHHHHHHh--cCCHHHHHHHHhhhh
Q 015811 264 -TYNTLMDGFCLTGKINRVKELFVSMESMG--CKHD--DFSYNILINGYCK--NKEVEEALSLYNELP 324 (400)
Q Consensus 264 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~--~~~~~~A~~~~~~~~ 324 (400)
.+-..+-++...||+..|...+++..... ...+ ......|+.++-. ...++.|..-|+.+.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 22223334455667777777777665432 1111 2344455555543 233555555555554
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0084 Score=44.46 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=43.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh
Q 015811 114 PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NPNV 192 (400)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 192 (400)
|++..-..|..++.+.|+..+|...|.+....- +.-|....-.+.++....+++..|...++++.+.+. ..+.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGI------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 344444444444444555555555554444433 344444444444444444555555444444443310 0011
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 193 VTYTSLIHGFCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (400)
.+...+.+.+...|.+.+|+.-|+....
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2223334444444455545554444444
No 185
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.76 E-value=0.0012 Score=50.36 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=58.9
Q ss_pred CCcccHHHHHHHHHhc-----CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHH
Q 015811 225 PNVVSSNVIMNELCKN-----GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFS 299 (400)
Q Consensus 225 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 299 (400)
.+..+|..++..|.+. |..+-....+..|.+.|+.-|..+|+.|+..+=+ |.+- |...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~- 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF- 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH-
Confidence 3555666666665433 4444455555666666666666666666665543 2211 1100
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccc
Q 015811 300 YNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIR 346 (400)
Q Consensus 300 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 346 (400)
+..+-.- .-.+-+-|++++++|...|+.||..++..++..+.+.+
T Consensus 108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 0000000 11245668889999999999999999999988885544
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.73 E-value=0.00099 Score=50.76 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=66.3
Q ss_pred CCcHHHHHHHHHHHHcC-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHH
Q 015811 259 RPNAFTYNTLMDGFCLT-----GKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333 (400)
Q Consensus 259 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 333 (400)
..+..+|..++..|.+. |..+=....++.|.+.|+..|..+|+.|++.+=+ |.+- -..+|
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f------------- 108 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF------------- 108 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH-------------
Confidence 34556666666666433 4455555556666666666666666666665543 2211 01111
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcc
Q 015811 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQV 383 (400)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 383 (400)
......| -.+.+-|++++++|...|+-||..++..|++.+.+.+..
T Consensus 109 --Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 109 --QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred --HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 1111111 234677999999999999999999999999999877643
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.015 Score=48.80 Aligned_cols=273 Identities=14% Similarity=0.048 Sum_probs=149.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
..+.+..++..|+..+...++.. +.+..-|..-+..+...+++++|+--.+.-.+... -......-.-+++.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-------~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-------GFSKGQLREGQCHL 128 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-------Cccccccchhhhhh
Confidence 34445556666666666666654 33344444455555555666665555444433221 11111112222222
Q ss_pred hcCChHHHHHHH---------------HHHHHcCC-CCChHhHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 015811 169 KEGFVDKAKELF---------------LQMKYENL-NPNVVTYTSL-IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSN 231 (400)
Q Consensus 169 ~~~~~~~a~~~~---------------~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 231 (400)
..++..+|.+.+ +....... +|.-.++..+ ..++.-.++.++|.+.--..++.. ....+.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~a 205 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEA 205 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHH
Confidence 222222222222 11111111 1222333333 234556688888887777666653 112223
Q ss_pred HHHH--HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHH-------------HHHHHHcCCChHHHHHHHHHHHhcC---C
Q 015811 232 VIMN--ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNT-------------LMDGFCLTGKINRVKELFVSMESMG---C 293 (400)
Q Consensus 232 ~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~~---~ 293 (400)
..++ ++--.++.+.+...|.+.++.+ |+...-.. =..-..+.|++..|.+.|.+.+..+ .
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence 3332 3445667788888888777653 33222111 1223467899999999999998653 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHH---HHHhccchHHHHHHHHHHHhhCCCCC-Chhh
Q 015811 294 KHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLF---HGLFEIRQAERALKLFVEMQGNDVAA-DTCT 369 (400)
Q Consensus 294 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 369 (400)
.|+...|........+.|+.++|+.--++.... |......++ .++...++|++|.+-+++..+....+ ...+
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~ 359 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRT 359 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 566677877888888999999999998888754 544433333 35667889999999998876543222 2334
Q ss_pred HHHHHHHhh
Q 015811 370 YRTFIDGLC 378 (400)
Q Consensus 370 ~~~l~~~~~ 378 (400)
+.....++-
T Consensus 360 l~~A~~aLk 368 (486)
T KOG0550|consen 360 LREAQLALK 368 (486)
T ss_pred HHHHHHHHH
Confidence 444443443
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.72 E-value=0.00012 Score=45.81 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=29.9
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHh
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG-QVSLGFVIFGRILR 74 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 74 (400)
.+|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344445555555555555555555554443 223444444445555554 35555555544443
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.70 E-value=0.00021 Score=44.09 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=30.4
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 18 LGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
...+.+.|++++|++.|+.+.+.. +-+...+..+..++...|++++|...|+.+++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555555555543 224455555555555555555555555555543
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.69 E-value=0.0045 Score=43.23 Aligned_cols=56 Identities=23% Similarity=0.125 Sum_probs=28.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHc
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPN--VITYNTLINGLCRTGHTIVALNLFKEMTN 144 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 144 (400)
.++-..|+.++|+.+|++....|+... ...+..+...+...|++++|+.++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555543322 22344444555555555555555555544
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.67 E-value=0.00025 Score=43.77 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=18.9
Q ss_pred HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811 273 CLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNEL 323 (400)
Q Consensus 273 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 323 (400)
...|++++|...|+++.+.. +-+...+..+..++...|++++|...|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444443332 223333333334444444444444444433
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.65 E-value=0.02 Score=51.02 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811 102 ALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEM 142 (400)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 142 (400)
--++++.+.|-.|+... +...++-.|.+.+|-++|.+-
T Consensus 621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 34556666665565543 445566677888888777653
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.62 E-value=0.014 Score=43.33 Aligned_cols=155 Identities=12% Similarity=0.005 Sum_probs=91.3
Q ss_pred HHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 015811 54 NCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI 133 (400)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (400)
.+..+.=+.+....-..+-.. ..|++..-..|..++.+.|+..+|...|++...--...|......+.++....+++.
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 64 MALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 333444444444333333222 245666666677777777777777777777765433456666666777777777777
Q ss_pred HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 015811 134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213 (400)
Q Consensus 134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 213 (400)
.|...++.+.+.++ -..++++.-.+.+.+...|.+.+|...|+.....- |+...-......+.+.|+.+++..
T Consensus 142 ~a~~tLe~l~e~~p-----a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 142 AAQQTLEDLMEYNP-----AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHHhhcCC-----ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 77777777766542 12234455566677777777777777777777653 343333333344455665555544
Q ss_pred HHHH
Q 015811 214 LLIE 217 (400)
Q Consensus 214 ~~~~ 217 (400)
-+.+
T Consensus 215 q~~~ 218 (251)
T COG4700 215 QYVA 218 (251)
T ss_pred HHHH
Confidence 3333
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.57 E-value=0.00076 Score=42.14 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=44.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES-RIVEAAALFTKLKAF 110 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 110 (400)
++.+|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45566777777777777777777777777764 225666777777777777 577777777776654
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.53 E-value=0.001 Score=55.46 Aligned_cols=132 Identities=13% Similarity=0.043 Sum_probs=86.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCcccHHHHHHHHHhcCCchhHHHHHHHHHh----CC-CCCcH
Q 015811 193 VTYTSLIHGFCHANDWNEAKGLLIEMVD----QGV-QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ----CD-VRPNA 262 (400)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~ 262 (400)
..|..|...|.-.|+++.|+...+.-+. -|- ......+..+..++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566777777778889988876654322 121 11234566777888888999999888876532 22 12234
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 263 FTYNTLMDGFCLTGKINRVKELFVSMESM-----GCKHDDFSYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
...-+|...|.-..+++.|+.++.+-... +..-....+-+|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45667777787778888888887764321 111234566778888888888888887776543
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.04 Score=46.17 Aligned_cols=297 Identities=14% Similarity=0.153 Sum_probs=163.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC 92 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
+|..+.......|+.+-|..+++. .|+..- =+..+.+.|+.+.| +.+..+.| .||. +|..|+..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence 577788888888888888876542 555532 24455667777776 44555654 3333 4455554433
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811 93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF 172 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (400)
... .. +++ .+... .|.. ..+...|++..+.+.-..+|.+-.+ ........+-.++ +..+
T Consensus 68 ~l~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~----------~~~~a~~~l~~~~-~~~~ 126 (319)
T PF04840_consen 68 KLS-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDR----------FQELANLHLQEAL-SQKD 126 (319)
T ss_pred hCC-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcch----------HHHHHHHHHHHHH-hCCC
Confidence 222 21 233 33322 2332 2345566666666665555543211 0111111222222 2244
Q ss_pred hHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCCHHHHHHHHH---HHHH-CCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811 173 VDKAKELFLQMKYE-NLNPNVVTYTSLIHGFCHANDWNEAKGLLI---EMVD-QGVQPNVVSSNVIMNELCKNGKMDNAS 247 (400)
Q Consensus 173 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (400)
.+.-...+....+. +-..+......++ ++-.++++ .+.. .+......+.+..+.-+...|+...|.
T Consensus 127 ~~~~~~~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~ 197 (319)
T PF04840_consen 127 VEEKISFLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAE 197 (319)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHH
Confidence 44444444443322 0011111111111 11112221 1111 122223345666677788888888888
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC
Q 015811 248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG 327 (400)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 327 (400)
++-.+. . -|+...|..-+.+++..++|++...+... +-++.-|...+.+|.+.|+..+|..++.++.
T Consensus 198 kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~--- 264 (319)
T PF04840_consen 198 KLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKIP--- 264 (319)
T ss_pred HHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC---
Confidence 776655 2 47888888889999999999887766432 2245778889999999999999998887732
Q ss_pred CCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 015811 328 IKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV 379 (400)
Q Consensus 328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (400)
+ ..-+..|.+.|++.+|.+.--+.. |...+..+...+..
T Consensus 265 ---~----~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 265 ---D----EERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPG 303 (319)
T ss_pred ---h----HHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCC
Confidence 1 345667888999999988765543 44455555544433
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.53 E-value=0.026 Score=44.12 Aligned_cols=61 Identities=15% Similarity=0.079 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC--CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 161 SIIIDGLCKEGFVDKAKELFLQMKYENLN--PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
-.....+...|++.+|.+.|+.+...... --......++.++.+.|+++.|...++.+++.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445566778888888888888765211 12244556677777888888888888887765
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.0022 Score=53.58 Aligned_cols=132 Identities=16% Similarity=0.069 Sum_probs=89.7
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHH----HhCCCC-CcHHHHHHHHHHHHcCCChHHHHHHHHHHH----hcCC-CCCH
Q 015811 228 VSSNVIMNELCKNGKMDNASRLLDLM----VQCDVR-PNAFTYNTLMDGFCLTGKINRVKELFVSME----SMGC-KHDD 297 (400)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~ 297 (400)
..|..+...|.-.|+++.|+...+.- .+.|-+ .....+..+..++.-.|+++.|.+.|+... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 44555666667788999988765432 222211 224567788889999999999999888753 3331 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhhhC-----CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 298 FSYNILINGYCKNKEVEEALSLYNELPFK-----GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 298 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
...-+|...|.-..++++|+.++.+-... +..-....+.+|..++...|..++|+.+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34456777788888899999887763321 123356678889999999999999998877655
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.51 E-value=0.016 Score=45.38 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 14 FNILLGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
+-.....+.+.|++.+|+..|+.+..... +--......++.++.+.|+++.|...++..++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445556667777777777777765421 112345556666777777777777777777664
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.49 E-value=0.0042 Score=50.38 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=53.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--ccHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PNVVTFTS 86 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 86 (400)
.|...+..+.+.|++++|+..|+.+.+.. |+ ..++..+..+|...|+++.|...|+.+.+..+. .....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444455566666666666666542 22 245556666666666666666666666653211 12333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
+..++...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455555666666666666666654
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.43 E-value=0.034 Score=47.12 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=40.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHh---cCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYSILINCFCK---MGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
.++-+|....+++..+++.+.+...- +..+...-.....++.+ .|+.++|++++..++.....++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445666666666666666665431 11122222333444455 5666666666666444444555666655555
Q ss_pred HH
Q 015811 90 GL 91 (400)
Q Consensus 90 ~~ 91 (400)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.42 E-value=0.0096 Score=43.80 Aligned_cols=108 Identities=21% Similarity=0.370 Sum_probs=64.4
Q ss_pred cchHHHHHH---HHHccCChhHHHHHHHHHHhC--C-CCCC------------------HHhHHHHHHHHHhcCChhhHH
Q 015811 11 VSSFNILLG---CLAKNKHYDTVLSLFKRLNSI--G-LFPD------------------LYTYSILINCFCKMGQVSLGF 66 (400)
Q Consensus 11 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~--g-~~~~------------------~~~~~~l~~~~~~~~~~~~a~ 66 (400)
+..|..++. .....++...+.+.++++... | +-|+ ..+...++..+...|+++.|.
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 344555533 335677888999988888764 2 1111 112334445556678888888
Q ss_pred HHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCChhhH
Q 015811 67 VIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK-----AFGCEPNVITY 119 (400)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 119 (400)
.+.+.+.... +.+...|..+|.++...|+...|.+.|+++. +.|+.|+..+-
T Consensus 83 ~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 83 RLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 8888887764 3467778888888888888888888877764 34777776553
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.38 E-value=0.067 Score=48.33 Aligned_cols=179 Identities=11% Similarity=-0.003 Sum_probs=104.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-cCCc--------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRS-CFAP--------NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE 113 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 113 (400)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+ --|.+++|+++|-++-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 578888888888777777777777766655432 2210 11111111222 2477888888887765442
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 015811 114 PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVV 193 (400)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 193 (400)
..+..+.+.|++-...++++.--.... -..-...|+.+...+.....|++|.+.|..-..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~d-----D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------- 824 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDD-----DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------- 824 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 245566677777766666554221110 011235677888888888888888887765432
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHH
Q 015811 194 TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLD 251 (400)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 251 (400)
....+.++.+..++++.+.+...+ +.+....-.+..++.+.|.-++|.+.+-
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 123456666666666655444333 4455566666677777777666665553
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.36 E-value=0.0086 Score=51.41 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=57.8
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-H---HhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD-L---YTYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
.|.+...|+.+..+|.+.|++++|+..|++.++.. |+ . .+|..+..+|...|+.++|++.+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46678899999999999999999999999988764 44 3 35899999999999999999999999885
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.33 E-value=0.0019 Score=40.87 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=37.3
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc
Q 015811 19 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC 76 (400)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 76 (400)
..|.+++++++|+++++.+...+ +.+...+.....++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45566677777777777766654 3455666666666677777777777777766653
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.33 E-value=0.0084 Score=48.67 Aligned_cols=91 Identities=10% Similarity=-0.019 Sum_probs=40.0
Q ss_pred HhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHh
Q 015811 127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL--NPNVVTYTSLIHGFCH 204 (400)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 204 (400)
.+.|++++|+..|+.+....+.. .-....+..+..+|...|++++|...|+.+.+... +.....+..+...+..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s----~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDS----TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 34455555555555555443110 01123344444555555555555555555543310 0112223333444445
Q ss_pred cCCHHHHHHHHHHHHHC
Q 015811 205 ANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 205 ~~~~~~a~~~~~~~~~~ 221 (400)
.|+.++|..+++.+.+.
T Consensus 230 ~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55555555555555543
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.31 E-value=0.0019 Score=40.81 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=26.1
Q ss_pred HHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 272 FCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 272 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
|.+.++++.|..+++.+...+ +.+...+.....++...|++++|...++...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444455555555555554443 334444444445555555555555555554443
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.061 Score=42.52 Aligned_cols=139 Identities=6% Similarity=-0.003 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHH-----HH
Q 015811 195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNT-----LM 269 (400)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~ 269 (400)
.+.++..+.-.+.+.-....+.++++...+.++.....+.+.-.+.||.+.|...|+...+..-..+..+++. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455566666677777777788877776566777777777777888888888888876655432333333332 33
Q ss_pred HHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHH
Q 015811 270 DGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYN 336 (400)
Q Consensus 270 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 336 (400)
..|.-++++..|...+.++...+ +.|+...|.-.-+..-.|+...|.+.++.|.+. .|...+-+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 34556677777777777777665 445555555555555667888888888888765 44444433
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.25 E-value=0.093 Score=44.06 Aligned_cols=293 Identities=12% Similarity=0.072 Sum_probs=177.9
Q ss_pred HHHHHHHHH--ccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH--HhcCChhhHHHHHHHHHhccCCccHHH--HHHH
Q 015811 14 FNILLGCLA--KNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCF--CKMGQVSLGFVIFGRILRSCFAPNVVT--FTSL 87 (400)
Q Consensus 14 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 87 (400)
|..|-.++. -.|+-..|.++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 356777777776665422 244555666666543 4579999999999999873 33222 2334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh--HHHHHH
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT--YSIIID 165 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~ 165 (400)
.-..-+.|+.+.|.++-+..-... +.-...+...+...+..|+++.|+++++.-..... +.++..- -..|+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----ie~~~aeR~rAvLLt 234 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-----IEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----hchhhHHHHHHHHHH
Confidence 444457899999998888877653 33456788899999999999999999998765432 2333221 112221
Q ss_pred HH---HhcCChHHHHHHHHHHHHcCCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811 166 GL---CKEGFVDKAKELFLQMKYENLNPNVV-TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG 241 (400)
Q Consensus 166 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (400)
+- .-..+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+....|+ +...|....
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~------ia~lY~~ar 306 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD------IALLYVRAR 306 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH------HHHHHHHhc
Confidence 11 112345555555544443 345432 223345667788888888888888887643333 223343333
Q ss_pred CchhHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 015811 242 KMDNASRLLDLMVQC-DVRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC-KNKEVEEALS 318 (400)
Q Consensus 242 ~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~ 318 (400)
.-+.+..-++...+. ..+| +......+..+-...|++..|..--+...+. .|....|..|.+.-. ..|+-.++..
T Consensus 307 ~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 307 SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHH
Confidence 333444444333221 1223 3455556667777788888777776666654 577777777766654 4488888888
Q ss_pred HHhhhhhC
Q 015811 319 LYNELPFK 326 (400)
Q Consensus 319 ~~~~~~~~ 326 (400)
++.+..+.
T Consensus 385 wlAqav~A 392 (531)
T COG3898 385 WLAQAVKA 392 (531)
T ss_pred HHHHHhcC
Confidence 88777654
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.067 Score=42.28 Aligned_cols=141 Identities=9% Similarity=0.018 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH----
Q 015811 158 VTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVI---- 233 (400)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 233 (400)
...+.++.++.-.|.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..-..+..+.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4566778888888999999999999998766667788888999999999999999999988765434444444443
Q ss_pred -HHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHH
Q 015811 234 -MNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYN 301 (400)
Q Consensus 234 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 301 (400)
...|.-++++..|...+.++...+ +.++...|.-.-+....|+..+|.+.++.+.+.. |...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 345666788888888888888765 4455555555555556789999999999998864 4444433
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.097 Score=43.95 Aligned_cols=124 Identities=11% Similarity=0.128 Sum_probs=89.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015811 193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGF 272 (400)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (400)
.+.+.-+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++...+-.. +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345555667778888888888766652 46888889999999999999987775432 22457788889999
Q ss_pred HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811 273 CLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL 342 (400)
Q Consensus 273 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 342 (400)
...|+..+|..+..++ + +..-+..|.+.|++.+|.+.--+.. |...+..+...+
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~ 301 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRC 301 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHC
Confidence 9999999998888762 2 2456788899999999987755443 444444444444
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.004 Score=45.86 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh-----CCCCcCHHH
Q 015811 264 TYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF-----KGIKPTVVT 334 (400)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~ 334 (400)
....++..+...|+++.|..+.+.+.... |.+...|..++.+|...|+...|.+.|+++.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33444555555666666666666666554 44555666666666666666666666665532 255555544
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.20 E-value=0.1 Score=43.78 Aligned_cols=286 Identities=14% Similarity=0.126 Sum_probs=185.9
Q ss_pred hcCChhhHHHHHHHHHhccCCccHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCChH
Q 015811 58 KMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG--LCAESRIVEAAALFTKLKAFGCEPNVIT--YNTLINGLCRTGHTI 133 (400)
Q Consensus 58 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 133 (400)
..|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |.... ...|.-..-+.|..+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 356777777776655432 22344444455533 34579999999999999852 33322 233444445789999
Q ss_pred HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChH--hHHHHHHHHHh---cCC
Q 015811 134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN-LNPNVV--TYTSLIHGFCH---AND 207 (400)
Q Consensus 134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~---~~~ 207 (400)
.|..+-+..-... +.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-.. ..+
T Consensus 172 aAr~yAe~Aa~~A-------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 172 AARHYAERAAEKA-------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HHHHHHHHHHhhc-------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 9999888887764 4456788899999999999999999998876542 333432 22233332211 134
Q ss_pred HHHHHHHHHHHHHCCCCCCcccH-HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHH
Q 015811 208 WNEAKGLLIEMVDQGVQPNVVSS-NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFV 286 (400)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 286 (400)
...|...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+....|+ ... +..+.+.|+. +.+-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdt--a~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDT--ALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCc--HHHHHH
Confidence 5555555544444 35554332 3345788999999999999999999765554 322 2234555553 333344
Q ss_pred HHH---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH-hccchHHHHHHHHHHHhhCC
Q 015811 287 SME---SMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL-FEIRQAERALKLFVEMQGND 362 (400)
Q Consensus 287 ~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~ 362 (400)
+.. ... +.+......+.++-...|++..|..--+..... .|....|..|...- ...|+-.++...+.+.++..
T Consensus 317 Ra~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 317 RAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 332 222 345667777888889999999988877776654 67888888777754 45599999999998887643
Q ss_pred CCC
Q 015811 363 VAA 365 (400)
Q Consensus 363 ~~~ 365 (400)
-.|
T Consensus 394 rdP 396 (531)
T COG3898 394 RDP 396 (531)
T ss_pred CCC
Confidence 333
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=97.12 E-value=0.043 Score=40.28 Aligned_cols=92 Identities=11% Similarity=-0.044 Sum_probs=75.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015811 52 LINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH 131 (400)
Q Consensus 52 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 131 (400)
...-+...|++++|..+|+-+.-.++. +...|..|..++-..+++++|...|......+ .-|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 344456789999999999998886543 67778888899999999999999999887665 3466666678889999999
Q ss_pred hHHHHHHHHHHHcC
Q 015811 132 TIVALNLFKEMTNG 145 (400)
Q Consensus 132 ~~~a~~~~~~~~~~ 145 (400)
.+.|...|......
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988763
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.21 Score=45.64 Aligned_cols=345 Identities=12% Similarity=0.105 Sum_probs=187.3
Q ss_pred HccCChhHHHHHHHHH--------HhCCCCCCHHhHHH-----HHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 22 AKNKHYDTVLSLFKRL--------NSIGLFPDLYTYSI-----LINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 22 ~~~~~~~~a~~~~~~~--------~~~g~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
.+.-++++-+.+...+ ...|++.+..-|.. ++.-+...+.+..|.++-..+-..-.. ...+|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHH
Confidence 3444555554444443 33466666655544 455566778888888887766432212 245666666
Q ss_pred HHHHhcCCH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHH
Q 015811 89 KGLCAESRI--VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDG 166 (400)
Q Consensus 89 ~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (400)
.-+.+..+. +++.+.+.+=...-. .+-..|..+.......|+.+-|..+++.=...+.... .-.+..-+...+.-
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~--lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVP--LLLKMKDSSLALKK 555 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhH--HHhccchHHHHHHH
Confidence 666665332 222222222222111 2345677777777788999999888875433321111 11233445666777
Q ss_pred HHhcCChHHHHHHHHHHHHcC-----------CCCChHhHHHHHH--------HHHhcCCHHHHHHHH--HHHHHC-CCC
Q 015811 167 LCKEGFVDKAKELFLQMKYEN-----------LNPNVVTYTSLIH--------GFCHANDWNEAKGLL--IEMVDQ-GVQ 224 (400)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~-~~~ 224 (400)
+...|+.+-...++-.+.+.- .+.....|.-+++ .+.+.++-.++...+ +...+. -+.
T Consensus 556 aies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~ 635 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIE 635 (829)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhc
Confidence 778888888777776665431 1111122222222 011111111111111 110000 011
Q ss_pred CCcccHHHHHHHHHhcCCchhHHHHH----------HHHH-hCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 015811 225 PNVVSSNVIMNELCKNGKMDNASRLL----------DLMV-QCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC 293 (400)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~a~~~~----------~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 293 (400)
+-..........+.+.....-..+.. +.+. +.+......+.+--+.-+...|+..+|.++-.+..
T Consensus 636 ~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---- 711 (829)
T KOG2280|consen 636 GRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---- 711 (829)
T ss_pred ccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----
Confidence 11222333344444443322211111 1111 11222333445555666777888888888877665
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHH
Q 015811 294 KHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTF 373 (400)
Q Consensus 294 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (400)
-||...|-.-+.+++..++|++-+++-+... ++.-|..++.+|.+.|+.++|.+++-+... +.-.
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ek 776 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEK 776 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHH
Confidence 5688888888889999999988777766544 244566788889999999999988865432 1156
Q ss_pred HHHhhcCCcchhhHhh
Q 015811 374 IDGLCVRPQVRFTYAR 389 (400)
Q Consensus 374 ~~~~~~~g~~~~a~~~ 389 (400)
..+|.+.|++.+|...
T Consensus 777 v~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 777 VKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHHHhccHHHHHHH
Confidence 7788888888887544
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=97.09 E-value=0.025 Score=41.45 Aligned_cols=93 Identities=9% Similarity=-0.089 Sum_probs=77.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES 95 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (400)
.....+...|++++|..+|.-+...+ +-+..-|..|..++-..+++++|...|......+. -|+..+-....++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 44555678999999999999998776 44777788888888899999999999998877653 35555667789999999
Q ss_pred CHHHHHHHHHHHHHc
Q 015811 96 RIVEAAALFTKLKAF 110 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~ 110 (400)
+.+.|...|+.....
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999998873
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.98 E-value=0.022 Score=40.25 Aligned_cols=88 Identities=13% Similarity=0.023 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHcCCC---------cccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 015811 117 ITYNTLINGLCRTGHTIVALNLFKEMTNGNG---------EIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE- 186 (400)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 186 (400)
.++..++.++++.|+.+....+++..-.... ..+....|+..+..+++.+|+..+++..|+++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3444555555555555555555544322110 111125677777777777777778888888777776654
Q ss_pred CCCCChHhHHHHHHHHHh
Q 015811 187 NLNPNVVTYTSLIHGFCH 204 (400)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~ 204 (400)
+++.+..+|..|++-+..
T Consensus 83 ~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 555566777777765443
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.96 E-value=0.0013 Score=42.31 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811 117 ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP-NTVTYSIIIDGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (400)
.+++.+...|...|++++|+..|++..+.....+. -.| ...++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777888888888888888888877654211110 122 256778888899999999999999988754
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.94 E-value=0.0036 Score=40.21 Aligned_cols=61 Identities=26% Similarity=0.319 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhhC----CC-CcC-HHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 299 SYNILINGYCKNKEVEEALSLYNELPFK----GI-KPT-VVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 299 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
+++.+...|...|++++|+..+++..+. |- .|+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554421 10 111 2344445555555666666666555543
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.094 Score=42.37 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=24.2
Q ss_pred HhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 57 CKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 57 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
...|++..|...|......... +...-..++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 4445555555555555443222 23334444455555555555555555443
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.94 E-value=0.025 Score=39.99 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015811 261 NAFTYNTLMDGFCLTGKINRVKELFVSM 288 (400)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (400)
|..++..++.++++.|+.+....+++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 4567778888888888888877777654
No 222
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.32 Score=44.31 Aligned_cols=274 Identities=18% Similarity=0.157 Sum_probs=130.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015811 52 LINCFCKMGQVSLGFVIFGRILRS-CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 130 (400)
Q Consensus 52 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 130 (400)
.+....+.|++-...++++.--.. .-..-...|+.+...++....+++|.+.|..-... ...+.++.+..
T Consensus 766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le 836 (1189)
T KOG2041|consen 766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLE 836 (1189)
T ss_pred hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHH
Confidence 344555666666555554431110 00112346777777777777778777777654311 23455555555
Q ss_pred ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 015811 131 HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNE 210 (400)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (400)
.+++-..+...+ +.+....-.+..++...|.-++|.+.|-+.. . |. ..+..|...++|.+
T Consensus 837 ~f~~LE~la~~L-----------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-pk-----aAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 837 LFGELEVLARTL-----------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-PK-----AAVHTCVELNQWGE 896 (1189)
T ss_pred hhhhHHHHHHhc-----------CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-cH-----HHHHHHHHHHHHHH
Confidence 555554444432 3444555666666777777766666554322 1 11 23345555566666
Q ss_pred HHHHHHHHHHCCC-----------CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC----CCCCcH----HHHHHHH-H
Q 015811 211 AKGLLIEMVDQGV-----------QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC----DVRPNA----FTYNTLM-D 270 (400)
Q Consensus 211 a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~----~~~~~l~-~ 270 (400)
|.++-+...-..+ -.+.. ...-+..+.+.|..-.|.+++.+|.+. +.++-. .++.+++ .
T Consensus 897 avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE 975 (1189)
T KOG2041|consen 897 AVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVE 975 (1189)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 6555443211000 00111 112344556666666666666555432 222111 1111111 1
Q ss_pred HH----------HcCCChHHHHHHHHHHHhcC---C------CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC-CCCc
Q 015811 271 GF----------CLTGKINRVKELFVSMESMG---C------KHDDFSYNILINGYCKNKEVEEALSLYNELPFK-GIKP 330 (400)
Q Consensus 271 ~~----------~~~~~~~~a~~~~~~~~~~~---~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p 330 (400)
-+ -..|..++|.++++...-.. + -.....|..|.+-....|.++.|+..--.+.+. .+-|
T Consensus 976 ~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lp 1055 (1189)
T KOG2041|consen 976 NHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLP 1055 (1189)
T ss_pred HHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCC
Confidence 11 12344455554443321110 0 012234445555566677788777654444432 4566
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHH
Q 015811 331 TVVTYNTLFHGLFEIRQAERALKLF 355 (400)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~a~~~~ 355 (400)
....|+.+.-+.+....+...-+.|
T Consensus 1056 P~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1056 PAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 6777776655444444443333333
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.85 E-value=0.25 Score=42.13 Aligned_cols=168 Identities=10% Similarity=0.064 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCChHhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCcccH
Q 015811 157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYEN---LNPNVVTYTSLIHGFCH---ANDWNEAKGLLIEMVDQGVQPNVVSS 230 (400)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 230 (400)
..+...++-.|....+++...++++.+.... +.-....-....-++.+ .|+.++|+.++..+......+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3444456666888899999999999988652 11122222334455566 78999999999996666667788888
Q ss_pred HHHHHHHHh---------cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCC-hH---HHHHHH---H-HHHhcC-
Q 015811 231 NVIMNELCK---------NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGK-IN---RVKELF---V-SMESMG- 292 (400)
Q Consensus 231 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~-~~~~~~- 292 (400)
..+.+.|-. ....++|...|.+.-+.. |+...=-.++..+...|. .+ +..++- . .+.+.|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 888776632 123566777776665532 443322222222222222 11 122222 1 111222
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 293 --CKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 293 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
-..+-..+..++.++.-.|++++|.+..++|...
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1233444566677777777777777777777755
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.72 E-value=0.43 Score=43.11 Aligned_cols=88 Identities=10% Similarity=0.141 Sum_probs=50.6
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-----------CHHhHHHHHHHHHhcCChh--hHHHHHHHHHhccCC
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFP-----------DLYTYSILINCFCKMGQVS--LGFVIFGRILRSCFA 78 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-----------~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~ 78 (400)
..+.+-+..|...|.+++|.++- -.|+.. +.-.++..=.+|.+-.+.. +...-++++.++|-.
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~ia----clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIA----CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccchhhhhccchhhhhccc----ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 44455556777888888886541 112211 2222333344555544433 334445667777777
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 79 PNVVTFTSLIKGLCAESRIVEAAALFTK 106 (400)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 106 (400)
|+... +...++-.|++.+|.++|.+
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 77644 44566678888888888765
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.23 Score=38.99 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRIL 73 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 73 (400)
.|.....+|....++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44444555555666666666555544
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.61 E-value=0.4 Score=41.33 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=84.2
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCC------HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH--HH
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPD------LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG--LC 92 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 92 (400)
+-+++++.+|..+|.+....- ..+ ...-+.++++|.. ++.+.....+....+.. | ...|..+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 457889999999999986542 222 2233456666653 45666666666555542 2 2233334333 34
Q ss_pred hcCCHHHHHHHHHHHHHc--CCCC------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChh
Q 015811 93 AESRIVEAAALFTKLKAF--GCEP------------NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTV 158 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (400)
+.+.+.+|.+.+...... +..+ |...-+..+.++...|++.++..+++++...--. .....+..
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk--rE~~w~~d 168 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK--RECEWNSD 168 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh--hhhcccHH
Confidence 678888888888776654 2221 1122245677888899999999988888664300 00236777
Q ss_pred hHHHHHHHHH
Q 015811 159 TYSIIIDGLC 168 (400)
Q Consensus 159 ~~~~l~~~~~ 168 (400)
+|+.++-.+.
T Consensus 169 ~yd~~vlmls 178 (549)
T PF07079_consen 169 MYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHHh
Confidence 7777544443
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.59 E-value=0.13 Score=36.89 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=58.3
Q ss_pred CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHH
Q 015811 6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVT 83 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 83 (400)
|..|....|+ -.....+.|++++|.+.|+.+..+-. +-...+-..++.++.+.++++.|...+++.++..+.-...-
T Consensus 6 ~~~~~~~ly~-~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 6 PDKSPQELYQ-EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 3333334443 44555678899999999998877521 22456677788888889999999999988888754433344
Q ss_pred HHHHHHHHHhcC
Q 015811 84 FTSLIKGLCAES 95 (400)
Q Consensus 84 ~~~l~~~~~~~~ 95 (400)
|...+.+++...
T Consensus 85 Ya~Y~~gL~~~~ 96 (142)
T PF13512_consen 85 YAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHHHHHHH
Confidence 555555544433
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=96.59 E-value=0.23 Score=43.16 Aligned_cols=79 Identities=16% Similarity=0.033 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 245 NASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
+|.++-+...+.+ +.|+.....+..+....++++.|...|++....+ +.....|......+.-.|+.++|...+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444455544 4455555555555555555556666666555543 2233444444444555556666666555544
Q ss_pred h
Q 015811 325 F 325 (400)
Q Consensus 325 ~ 325 (400)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.56 E-value=0.055 Score=46.73 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=36.7
Q ss_pred cccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH----HHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811 227 VVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA----FTYNTLMDGFCLTGKINRVKELFVSMESM 291 (400)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (400)
...+..+..+|...|++++|...|+..++.+ |+. .+|..+..+|...|+.++|...+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445556666666666666666666665543 331 23556666666666666666666666553
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.067 Score=45.11 Aligned_cols=95 Identities=12% Similarity=0.014 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811 263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL 342 (400)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 342 (400)
.++..+.-++.+.+++..|+..-+..+..+ ++|....-.-.+++...|+++.|+..|+++++. .|+......=+..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 456677778889999999999999988887 678888878888999999999999999999876 56655544433333
Q ss_pred -hccchH-HHHHHHHHHHhh
Q 015811 343 -FEIRQA-ERALKLFVEMQG 360 (400)
Q Consensus 343 -~~~~~~-~~a~~~~~~~~~ 360 (400)
-+..++ +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 333333 344677777764
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=96.52 E-value=0.47 Score=41.33 Aligned_cols=167 Identities=9% Similarity=0.041 Sum_probs=100.5
Q ss_pred CCCc---chH--HHHHHHHHcc-----CChhHHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhc---------CChhhHH
Q 015811 8 PPPV---SSF--NILLGCLAKN-----KHYDTVLSLFKRLNSI-GLFPD-LYTYSILINCFCKM---------GQVSLGF 66 (400)
Q Consensus 8 p~~~---~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-g~~~~-~~~~~~l~~~~~~~---------~~~~~a~ 66 (400)
|.+. .+| ..++.+.... ...+.|+.+|.+.... ...|+ ...|..+..++... .+..+|.
T Consensus 245 ~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~ 324 (458)
T PRK11906 245 KQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKAL 324 (458)
T ss_pred CCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 3455 667 6666666552 2356788888888721 22343 44555444443321 2344666
Q ss_pred HHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 67 VIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
++-+...+.+ +.|......+..+..-.++++.|...|++....+ +-...+|......+.-.|+.++|.+.+++..+..
T Consensus 325 ~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 325 ELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 7777777765 3377777777777777788888888888888764 3344555555556667888888888888876654
Q ss_pred CcccccccCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 015811 147 GEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ 182 (400)
Q Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (400)
+ .+.-.......+..|+.. ..+.++++|-+
T Consensus 403 P-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 403 P-----RRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred c-----hhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 2 222233333444445443 45666666544
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.51 E-value=0.58 Score=42.01 Aligned_cols=164 Identities=13% Similarity=0.097 Sum_probs=104.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 015811 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSL 198 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 198 (400)
+....-.|+-+.+++.+.+..+..+-.++....-.-.|...+..++. ..+.+.|.+++..+.+. -|+...|...
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~ 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFF 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 34444578999999999987764421100000111234444443333 45678899999998876 4676666543
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHH-HHH
Q 015811 199 -IHGFCHANDWNEAKGLLIEMVDQG---VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMD-GFC 273 (400)
Q Consensus 199 -~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 273 (400)
.+.+...|+.++|++.++...... .+.....+-.+...+.-.++|++|...+..+.+.. ..+..+|.-+.. ++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 345667799999999999766421 11223445556677888999999999999998864 445555554433 344
Q ss_pred cCCCh-------HHHHHHHHHHH
Q 015811 274 LTGKI-------NRVKELFVSME 289 (400)
Q Consensus 274 ~~~~~-------~~a~~~~~~~~ 289 (400)
..++. ++|..++.++.
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHH
Confidence 56666 77888887764
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.50 E-value=0.31 Score=43.70 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=98.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChH------hHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHH
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVV------TYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQPNVVSSN 231 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 231 (400)
.+++...-.||-+.+++.+....+.+--..+. .|..++..++. ..+.+.|.+++..+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 44455556788888888888766542111111 23333333332 34578888888888876 45554443
Q ss_pred H-HHHHHHhcCCchhHHHHHHHHHhCC---CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHH-H
Q 015811 232 V-IMNELCKNGKMDNASRLLDLMVQCD---VRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILIN-G 306 (400)
Q Consensus 232 ~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 306 (400)
. -.+.+...|++++|.+.|+...... .+.....+--+.-.+...+++++|...|..+.+.. ..+..+|..+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 3 3456677889999999988765321 11223344455566777888999999998888754 445555554443 3
Q ss_pred HHhcCCH-------HHHHHHHhhhh
Q 015811 307 YCKNKEV-------EEALSLYNELP 324 (400)
Q Consensus 307 ~~~~~~~-------~~A~~~~~~~~ 324 (400)
+...++. ++|..++.+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4456666 77888887764
No 234
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.49 E-value=0.21 Score=38.44 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=28.6
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKA 109 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 109 (400)
+.+||.+.--+...|+++.|.+.|+...+.++.-+-...|.-|. +.-.|++.-|.+-+...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 34555555555555555555555555555432222222222222 1234555555544444443
No 235
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.7 Score=42.52 Aligned_cols=321 Identities=12% Similarity=0.080 Sum_probs=175.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--hhHHHHHHHHHhccCCccHHHHHHHHHHHHh
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV--SLGFVIFGRILRSCFAPNVVTFTSLIKGLCA 93 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (400)
.+|.-+...+.|..|+++-..+...-.. ....|.....-+.+..+. +.+.+..++=++... -....|..+.+-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 4566677788899999887776532111 145566665555554322 222222222222212 245567778877788
Q ss_pred cCCHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccc-----ccCChhhHHHHH
Q 015811 94 ESRIVEAAALFTKLKAFGCE----PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVV-----FKPNTVTYSIII 164 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ 164 (400)
.|+++.|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+.+.-...... .+.....|.-++
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~ 599 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFM 599 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 99999998877652222100 122234445555666777777666665555432100000 011112222222
Q ss_pred H--------HHHhcCChHHHHHHHH--HHHHc-CCCCChHhHHHHHHHHHhcCCHH----------HHHHHHHHHHHC-C
Q 015811 165 D--------GLCKEGFVDKAKELFL--QMKYE-NLNPNVVTYTSLIHGFCHANDWN----------EAKGLLIEMVDQ-G 222 (400)
Q Consensus 165 ~--------~~~~~~~~~~a~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~-~ 222 (400)
+ -+.+.++-.++...|. ..... .+.+-..........+.+..... .-..+.+.+..+ |
T Consensus 600 r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~ 679 (829)
T KOG2280|consen 600 RHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG 679 (829)
T ss_pred HhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 0111112112221111 10000 01111122233334444433311 111222222222 3
Q ss_pred CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 015811 223 VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI 302 (400)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 302 (400)
.....-+.+.-+.-+...|+-.+|.++-.+.. -||...|-.=+.+++..+++++.+++-+... .+.-|.-
T Consensus 680 ~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P 749 (829)
T KOG2280|consen 680 GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP 749 (829)
T ss_pred cccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence 33444566667777888999999988877663 5788888888999999999988777665443 2455778
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHH
Q 015811 303 LINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVE 357 (400)
Q Consensus 303 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 357 (400)
.+.+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.++--+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 899999999999999998776432 1 466788888998888876544
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.46 E-value=0.5 Score=40.76 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhcCCCCCHH----HHHHHHHH--HHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHH
Q 015811 278 INRVKELFVSMESMGCKHDDF----SYNILING--YCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERA 351 (400)
Q Consensus 278 ~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 351 (400)
+.+-.++-+-+.+.|++|-.. .-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 344444444455556555332 33444333 4566777777655544443 367777777777777777788888
Q ss_pred HHHHHHH
Q 015811 352 LKLFVEM 358 (400)
Q Consensus 352 ~~~~~~~ 358 (400)
..++..+
T Consensus 515 ~~~l~~L 521 (549)
T PF07079_consen 515 WEYLQKL 521 (549)
T ss_pred HHHHHhC
Confidence 8777764
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.27 E-value=0.32 Score=43.05 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=26.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811 115 NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (400)
+...|..|.....+.|+++-|.+.|.+..+ |..++-.|.-.|+.+...++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 444555555555555555555555554322 33444444555555544444444443
No 238
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.23 E-value=0.015 Score=32.30 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=22.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSIL 52 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 52 (400)
+|..+...|.+.|++++|+++|+++.+.. +-|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45556666666666666666666666553 3344444443
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.15 Score=43.20 Aligned_cols=124 Identities=18% Similarity=0.114 Sum_probs=85.9
Q ss_pred HHHHhcCChhhHHHHHHHHHhc-----cCC---------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 015811 54 NCFCKMGQVSLGFVIFGRILRS-----CFA---------PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITY 119 (400)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 119 (400)
..+.+.|++..|...|++.+.. +.+ .-..++..+.-++.+.+++..|++.-++.+..+ +.++...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4566777777777777765542 111 123456777888889999999999988888876 6788888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH-HHHHHHHHHHH
Q 015811 120 NTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD-KAKELFLQMKY 185 (400)
Q Consensus 120 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~ 185 (400)
..-..++...|+++.|...|+++.+.. |.|...-+-++.+-.+..... ...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~-------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE-------PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888999999999999999998864 334444444444444444433 34667777754
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.14 E-value=0.66 Score=38.84 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=12.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHH
Q 015811 266 NTLMDGFCLTGKINRVKELFVSM 288 (400)
Q Consensus 266 ~~l~~~~~~~~~~~~a~~~~~~~ 288 (400)
..+...|...|+.+.|+.-|+..
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHH
Confidence 34445555556666655555543
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.05 E-value=0.092 Score=42.01 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHHHHc-----CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 015811 260 PNAFTYNTLMDGFCL-----TGKINRVKELFVSMESMGCKHDDFSYNILINGYCK 309 (400)
Q Consensus 260 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (400)
-|...|-..+..+.. .+..+=....++.|.+.|+.-|..+|+.|+..+-+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 355566666655543 24455555666777777777788888777776543
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.04 E-value=0.31 Score=34.14 Aligned_cols=92 Identities=15% Similarity=0.033 Sum_probs=64.9
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHH---HHHHHHHHHHhcC
Q 015811 19 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVV---TFTSLIKGLCAES 95 (400)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 95 (400)
-+++..|+.+.|++.|.+....- +.....||.-.+++.-.|+.++|++-+++.++..-..+.. .|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35667888888888888877653 4467788888888888888888888888877643222222 2333445566778
Q ss_pred CHHHHHHHHHHHHHcC
Q 015811 96 RIVEAAALFTKLKAFG 111 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~ 111 (400)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888887777666
No 243
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.03 E-value=0.58 Score=37.26 Aligned_cols=81 Identities=11% Similarity=-0.005 Sum_probs=50.4
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhccC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCF--APNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLI 123 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 123 (400)
...|+..+ .-.+.|++++|.+.|+.+....+ +-...+...++.++.+.++++.|+..+++....-.......|...|
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 33444433 34677888888888888886532 1234455666777788888888888888887763222233344444
Q ss_pred HHHH
Q 015811 124 NGLC 127 (400)
Q Consensus 124 ~~~~ 127 (400)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 4444
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.01 E-value=0.38 Score=34.97 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=16.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFC 203 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (400)
.++..+...+.+.....+++.+...+ ..+....+.++..|+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 33333333344444444444443332 123333444444443
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.35 Score=39.94 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=110.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH----HHHHHHHHhcCCc
Q 015811 168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSS----NVIMNELCKNGKM 243 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 243 (400)
-..|+..+|-..++++.+. .+.|...+...=.+|.-.|+...-...++++... -.+|...| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567888888888888865 4557777777788888999999888888888764 12344333 3344556788999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015811 244 DNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESM---GCKHDDFSYNILINGYCKNKEVEEALSLY 320 (400)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 320 (400)
++|++.-++..+.+ +.|...-.+....+.-.|+..++.++..+-... +.-.-...|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999998876 667777788888888889999988887665431 10011122333444566778999999999
Q ss_pred hhhhhC
Q 015811 321 NELPFK 326 (400)
Q Consensus 321 ~~~~~~ 326 (400)
+.-+-.
T Consensus 271 D~ei~k 276 (491)
T KOG2610|consen 271 DREIWK 276 (491)
T ss_pred HHHHHH
Confidence 864433
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.59 Score=36.81 Aligned_cols=208 Identities=13% Similarity=0.063 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY 160 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
...|.....+|....++++|...+.+..+- .+.+...|. .....+.|.-+.+++... +--...|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--------sEvvdl~ 94 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--------SEVVDLY 94 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--------HHHHHHH
Confidence 344555666777788888888877766532 122222222 123345555555555542 2234455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCcccHHHHHH
Q 015811 161 SIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ---G--VQPNVVSSNVIMN 235 (400)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~ 235 (400)
+.....|...|.++.|-..+++.-+. ..+-++++|+.++++...- + ...-...+..+.+
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 66666777777777776666655432 1223344444444443221 0 0001122333444
Q ss_pred HHHhcCCchhHHHHHHHHH----hCCCCCc-HHHHHHHHHHHHcCCChHHHHHHHHHHHhcC---CCCCHHHHHHHHHHH
Q 015811 236 ELCKNGKMDNASRLLDLMV----QCDVRPN-AFTYNTLMDGFCLTGKINRVKELFVSMESMG---CKHDDFSYNILINGY 307 (400)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~ 307 (400)
.+.+...+++|-..+.+-. +..-.++ -..|...|-.+....++..|...++.-.+.+ -+.+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 5556666666554443321 1111122 2234455555666678888888887754432 233455666666665
Q ss_pred HhcCCHHHHHHHHh
Q 015811 308 CKNKEVEEALSLYN 321 (400)
Q Consensus 308 ~~~~~~~~A~~~~~ 321 (400)
..|+.+++..++.
T Consensus 239 -d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 -DEGDIEEIKKVLS 251 (308)
T ss_pred -ccCCHHHHHHHHc
Confidence 4566666665553
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.52 Score=43.91 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=40.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811 165 DGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD 244 (400)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (400)
..+.+.|++++|...|-+-+.. +.|+ .++.-|.......+-..+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3344556666666555544322 1221 2333444444555555555666555533 3344455556666666655
Q ss_pred hHHHHHHHH
Q 015811 245 NASRLLDLM 253 (400)
Q Consensus 245 ~a~~~~~~~ 253 (400)
+..++.+..
T Consensus 449 kL~efI~~~ 457 (933)
T KOG2114|consen 449 KLTEFISKC 457 (933)
T ss_pred HHHHHHhcC
Confidence 555444433
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.95 E-value=0.2 Score=44.27 Aligned_cols=142 Identities=15% Similarity=0.111 Sum_probs=86.9
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH-------HHHHHhcc----------CCccHH
Q 015811 20 CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI-------FGRILRSC----------FAPNVV 82 (400)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~-------~~~~~~~~----------~~~~~~ 82 (400)
...-+++++++.++.+.-.-.. .-+....+.++..+-+.|-.+.|+++ |+-.++.| ...+..
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~ 348 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPE 348 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHH
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHH
Confidence 3344666666655554111000 01133455555555666666655544 22222222 134778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811 83 TFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI 162 (400)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
.|..|......+|+++-|++.|.+... +..|+-.|.-.|+.+...++.+.....+ -++.
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------------~~n~ 407 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------------DINI 407 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------------HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------------CHHH
Confidence 999999999999999999999988653 5677778888999988888888777665 3666
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 015811 163 IIDGLCKEGFVDKAKELFLQM 183 (400)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~ 183 (400)
...++.-.|+.++..+++...
T Consensus 408 af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 408 AFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHc
Confidence 677777789998888877653
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.91 E-value=0.34 Score=40.46 Aligned_cols=233 Identities=9% Similarity=0.021 Sum_probs=139.9
Q ss_pred HHHccCChhHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc--cCC---ccHHHHHHHHHHHH
Q 015811 20 CLAKNKHYDTVLSLFKRLNSI--GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS--CFA---PNVVTFTSLIKGLC 92 (400)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~ 92 (400)
-+....+.++|+..+..-+.. +...-..++..+..+.++.|.+++++..--..++. ... .--..|..+.+++-
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888776542 11112346777788888888888776542222111 001 12234555666666
Q ss_pred hcCCHHHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 93 AESRIVEAAALFTKLKAF-GCEPN---VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
+..++.+++.+-..-... |..|. -....++..++...+.++++++.|+...+...+.+- ......+|-.+.+.|.
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHH
Confidence 666666666655544432 22221 123344666777778899999999887665422110 1233467889999999
Q ss_pred hcCChHHHHHHHHHHHHc----CCCCCh-HhH-----HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CcccHHHH
Q 015811 169 KEGFVDKAKELFLQMKYE----NLNPNV-VTY-----TSLIHGFCHANDWNEAKGLLIEMVD----QGVQP-NVVSSNVI 233 (400)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~----~~~~~~-~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l 233 (400)
+..|+++|.-+..+..+. ++. |. .-| ..+.-++...|....|.+.-++..+ .|-.+ .......+
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 999999998777665432 222 22 112 2234456677888777777776554 33211 22344556
Q ss_pred HHHHHhcCCchhHHHHHHHHH
Q 015811 234 MNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 234 ~~~~~~~~~~~~a~~~~~~~~ 254 (400)
...|...|+.+.|..-|+...
T Consensus 253 aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHH
Confidence 778889999999988887654
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.35 Score=39.89 Aligned_cols=152 Identities=9% Similarity=-0.006 Sum_probs=92.5
Q ss_pred hcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh----HHHHHHHHHhcCChH
Q 015811 58 KMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT----YNTLINGLCRTGHTI 133 (400)
Q Consensus 58 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~ 133 (400)
..|+..+|-..++++++.- +.|...+..-=.+|...|+...-...++++...= .++... ...+.-++...|.++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 3566667777777777652 4466666666667777777777777777766431 233322 223344556678888
Q ss_pred HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CChHhHHHHHHHHHhcCCHHH
Q 015811 134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN---PNVVTYTSLIHGFCHANDWNE 210 (400)
Q Consensus 134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 210 (400)
+|.+.-++..+.+ +.|..........+...|++.++.+++.+-...--. .-.+-|=...-.+...+.++.
T Consensus 193 dAEk~A~ralqiN-------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 193 DAEKQADRALQIN-------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred hHHHHHHhhccCC-------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 8888888877765 566677777777777788888887776654322000 001112222334455577888
Q ss_pred HHHHHHHH
Q 015811 211 AKGLLIEM 218 (400)
Q Consensus 211 a~~~~~~~ 218 (400)
|+++|+.-
T Consensus 266 aleIyD~e 273 (491)
T KOG2610|consen 266 ALEIYDRE 273 (491)
T ss_pred HHHHHHHH
Confidence 88887653
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.84 E-value=2 Score=41.99 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=21.2
Q ss_pred CCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHc
Q 015811 113 EPNVITYNTLINGLCRTG--HTIVALNLFKEMTN 144 (400)
Q Consensus 113 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 144 (400)
.|+ .-...++.+|.+.+ ..++++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 44556788888877 66777777777664
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.82 E-value=0.89 Score=37.69 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh
Q 015811 118 TYNTLINGLCRTGHTI---VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVT 194 (400)
Q Consensus 118 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 194 (400)
++..++.++...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+.+.+.+..|...- ......
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~ 157 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESN 157 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccch
Confidence 4556667777666543 4555666665543 2334555566677777788888888888887652 212334
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCC
Q 015811 195 YTSLIHGFCHA--NDWNEAKGLLIEMVDQGVQPN 226 (400)
Q Consensus 195 ~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~ 226 (400)
+...+..+... .....+...+..+....+.|.
T Consensus 158 ~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 158 FDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 44444443211 223445555555544433333
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.79 E-value=0.27 Score=39.41 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=37.4
Q ss_pred cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-ChHhHHHHHHHHHhcC
Q 015811 129 TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NP-NVVTYTSLIHGFCHAN 206 (400)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~ 206 (400)
.|++..|...|....+..+.. .-....+-.|..++...|++++|..+|..+.+... .| -+..+..|..+..+.|
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 344555555555544443211 11222333444455555555555555544443310 00 1133333444444444
Q ss_pred CHHHHHHHHHHHHHC
Q 015811 207 DWNEAKGLLIEMVDQ 221 (400)
Q Consensus 207 ~~~~a~~~~~~~~~~ 221 (400)
+.++|..+|+++.+.
T Consensus 230 ~~d~A~atl~qv~k~ 244 (262)
T COG1729 230 NTDEACATLQQVIKR 244 (262)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555444443
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.68 E-value=0.043 Score=30.39 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=10.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHh
Q 015811 267 TLMDGFCLTGKINRVKELFVSMES 290 (400)
Q Consensus 267 ~l~~~~~~~~~~~~a~~~~~~~~~ 290 (400)
.+...|...|++++|.++++++.+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.55 E-value=1.1 Score=37.06 Aligned_cols=163 Identities=10% Similarity=0.062 Sum_probs=99.7
Q ss_pred HHccCChhHHHHHHHHHHhCC--CCCCHH------hHHHHHHHHHhcC-ChhhHHHHHHHHHhc----c----CCcc---
Q 015811 21 LAKNKHYDTVLSLFKRLNSIG--LFPDLY------TYSILINCFCKMG-QVSLGFVIFGRILRS----C----FAPN--- 80 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~--- 80 (400)
..++|+++.|..++.+..... ..|+.. .|+.- ......+ +++.|..++++..+. + ..|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 357899999999999986532 233321 23333 3334455 888888777766543 1 1222
Q ss_pred --HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC
Q 015811 81 --VVTFTSLIKGLCAESRIV---EAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP 155 (400)
Q Consensus 81 --~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (400)
..++..++.+|...+..+ +|..+++.+.... +-.+.++..-+..+.+.++.+++.+.+.+|...- ..
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-------~~ 153 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-------DH 153 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-------cc
Confidence 345677778888877654 5566666665442 3335556566777777899999999999998763 32
Q ss_pred ChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCh
Q 015811 156 NTVTYSIIIDGLCK--EGFVDKAKELFLQMKYENLNPNV 192 (400)
Q Consensus 156 ~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 192 (400)
....+..++..+.. ......+...+..+....+.|..
T Consensus 154 ~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44555555555422 23345566666666555444443
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.46 E-value=0.2 Score=40.22 Aligned_cols=101 Identities=11% Similarity=0.117 Sum_probs=72.8
Q ss_pred CCCHHhHHHHHHHHHh-----cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC----------------CHHHHH
Q 015811 43 FPDLYTYSILINCFCK-----MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES----------------RIVEAA 101 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 101 (400)
..|-.+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3456666666666644 3456666677778888888888888888887754322 234578
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHH
Q 015811 102 ALFTKLKAFGCEPNVITYNTLINGLCRTGHTI-VALNLFKEMT 143 (400)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~ 143 (400)
+++++|...|+-||..+-..|++++.+.+..- +..+++-.|.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999999999887643 3444444443
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.45 E-value=0.97 Score=36.36 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=61.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC-c-cHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA-P-NVVTFTSLI 88 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 88 (400)
.|+.-+..+ +.|++..|...|....+... .-....+.-|..++...|+++.|..+|..+.+.-++ | -+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 465555444 45667777777777776531 112345566677777777777777777777664221 1 234555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 015811 89 KGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6677777777777777777765
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=1.3 Score=36.18 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMT 143 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 143 (400)
...|++.+|..+|....... +-+......+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34444445555444444432 2223333344444455555555555554443
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.25 E-value=0.78 Score=33.32 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=18.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK 58 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 58 (400)
.++..+.+.+.......+++.+...+ ..+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444444444444444443 2344444444444443
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.18 E-value=0.32 Score=39.59 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh-----CCCCcCHHHHHHH
Q 015811 264 TYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF-----KGIKPTVVTYNTL 338 (400)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 338 (400)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555666666666666666666666654 45666666677777777777666666666543 3666666665555
Q ss_pred HHH
Q 015811 339 FHG 341 (400)
Q Consensus 339 ~~~ 341 (400)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.09 E-value=0.3 Score=39.74 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=66.3
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKA-----FGCEPNVITY 119 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 119 (400)
-..++..++..+...|+.+.+...++.+.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34577888888889999999999999998875 34888899999999999999999998888765 5788888887
Q ss_pred HHHHHHH
Q 015811 120 NTLINGL 126 (400)
Q Consensus 120 ~~l~~~~ 126 (400)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 7766663
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.07 E-value=0.78 Score=32.31 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811 263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI 328 (400)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 328 (400)
......+......|+-+...+++..+.+.+ .+++...-.+..+|.+.|+..++-+++.++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344444555566666666666666665433 55666666666666666666666666666665554
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=3.2 Score=39.09 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=74.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG 90 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (400)
....-+..+.+...++-|+.+-+. .+..++ ..........+.+.|++++|...|-+.+.. +.|. .++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 344566777777888888777544 222222 223344445566788888888877766553 1222 24555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMT 143 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 143 (400)
|........--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 56666667777777777777743 44555667778888777766666555443
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.97 E-value=0.52 Score=33.05 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=47.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh---hhHHHHHHH
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT---VTYSIIIDG 166 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~ 166 (400)
+++..|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+++..+..+ ..+. ..|-.-...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag------~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAG------DQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHH
Confidence 3445566666666666655542 34555666666666666666666666665554432 1111 122222234
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 015811 167 LCKEGFVDKAKELFLQMKYEN 187 (400)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~ 187 (400)
|...|+-+.|..=|+...+.|
T Consensus 125 yRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhC
Confidence 445556666665555554443
No 265
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.97 E-value=0.84 Score=32.16 Aligned_cols=122 Identities=12% Similarity=0.073 Sum_probs=77.2
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc-----------------CCccHHH
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC-----------------FAPNVVT 83 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~ 83 (400)
+.-.|..++..++..+.... .+..-+|-++--....-+-+-..++++.+-+.- ...+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence 34578889999999888763 355555555544444444444444444332210 0124455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
....+..+...|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 6677788888999999999999987654 7888889999999999999999999999998876
No 266
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.90 E-value=1.1 Score=33.35 Aligned_cols=133 Identities=16% Similarity=0.211 Sum_probs=72.7
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 015811 31 LSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES--RIVEAAALFTKLK 108 (400)
Q Consensus 31 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 108 (400)
.+.+..+.+.+++|+...+..++..+.+.|++... .++++.++-+|.......+-.+.... -.+-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45556666777788888888888888888876543 33444444455544443332222211 1223333333332
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811 109 AFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (400)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 90 --------~~~~~iievLL~~g~vl~ALr~ar~~~~~----------~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 --------TAYEEIIEVLLSKGQVLEALRYARQYHKV----------DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----------ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12445666777778888887777665322 222334556666666665554444444443
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.80 E-value=0.065 Score=28.09 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=12.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHH
Q 015811 14 FNILLGCLAKNKHYDTVLSLFKR 36 (400)
Q Consensus 14 ~~~l~~~~~~~~~~~~a~~~~~~ 36 (400)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 268
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.80 E-value=2 Score=35.79 Aligned_cols=139 Identities=11% Similarity=0.096 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCCC---CCcccHHHHHHHHHhcCC-
Q 015811 173 VDKAKELFLQMKYENLNPNVVTYTSLIHGFCH--AN----DWNEAKGLLIEMVDQGVQ---PNVVSSNVIMNELCKNGK- 242 (400)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~- 242 (400)
+++.+.+++.+.+.|+.-+..+|.+....... .. ....+..+++.|.+.... ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788888988888777666553333332 22 357788999999887422 233444444322 3333
Q ss_pred ---chhHHHHHHHHHhCCCCCcH--HHHHHHHHHHHcCCC--hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 015811 243 ---MDNASRLLDLMVQCDVRPNA--FTYNTLMDGFCLTGK--INRVKELFVSMESMGCKHDDFSYNILINGYCKNKEV 313 (400)
Q Consensus 243 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (400)
.+.++.+|+.+.+.|+..+- .....++........ ..++..+++.+.+.++++....|..+.-...-.+..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 34566777788776655432 333444433322222 347788888899999888888777666544443333
No 269
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.75 E-value=3.1 Score=37.58 Aligned_cols=133 Identities=13% Similarity=0.140 Sum_probs=86.6
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL-YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
+...|..+|.---...+.+.+...+..++.. .|-. .-|......=.+.|..+.+.++|++.+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3455666666555555667777777777754 3443 35566666667788888888888888764 455666776665
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811 89 KGLC-AESRIVEAAALFTKLKAF-GCE-PNVITYNTLINGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 89 ~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
..+. ..|+.+...+.|+..... |.. .+...|...|.--...+++.....+++++.+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5443 456777777777777653 322 23455666666666777777777777777653
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.72 E-value=0.71 Score=35.13 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=71.8
Q ss_pred HHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 34 FKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NVVTFTSLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 34 ~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
++...+..+.-+ ...+..+...|.+.|+.+.|.+.|.++.+....+ -...+-.+++.....+++..+...+.+....
T Consensus 23 lk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 23 LKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333334433333 3577888889999999999999999988764433 3445677888888889998888888776643
Q ss_pred CCCCChhhHHHHHH-----HHHhcCChHHHHHHHHHHHcCC
Q 015811 111 GCEPNVITYNTLIN-----GLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 111 ~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
--.........-+. .+...+++.+|-+.|-......
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 11111111111111 2335678888888877665444
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.69 E-value=0.84 Score=34.74 Aligned_cols=96 Identities=16% Similarity=0.033 Sum_probs=55.6
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
.++..+...|.+.|+.+.|++.|.++......+. ...+..+++.....+++..+...+.+....-..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3566677777777777777777777766543332 34566677777777777777777666655321211111111121
Q ss_pred -----HHHhcCCHHHHHHHHHHH
Q 015811 90 -----GLCAESRIVEAAALFTKL 107 (400)
Q Consensus 90 -----~~~~~~~~~~a~~~~~~~ 107 (400)
.+...+++..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 233456666666666554
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.62 E-value=1.4 Score=32.94 Aligned_cols=99 Identities=12% Similarity=0.172 Sum_probs=48.0
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHh
Q 015811 213 GLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTG--KINRVKELFVSMES 290 (400)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 290 (400)
++++.+.+.+++|+...+..++..+.+.|++... ..+.+.++-+|.......+-.+.... -.+.+.+++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 3444445556666666666666666666654433 33333334444444443332222211 12233333333321
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811 291 MGCKHDDFSYNILINGYCKNKEVEEALSLYNEL 323 (400)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 323 (400)
.+..+++.+...|++-+|.++.+..
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 2345566666777777777776654
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=1.4 Score=32.79 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=54.6
Q ss_pred HhcCChHHHHHHHHHHHcCCCcccccccCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-hHHHH--HHHH
Q 015811 127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPN-TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVV-TYTSL--IHGF 202 (400)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~ 202 (400)
.+.+..++|+.-|..+.+.+- ..- .-.--.........|+...|...|+++-.....|... -...| ...+
T Consensus 69 A~~~k~d~Alaaf~~lektg~------g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGY------GSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCC------CcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 345556666666666655441 110 1111112223445566666666666655443222221 11111 1123
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811 203 CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ 255 (400)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (400)
...|.+++.....+.+-..+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34555555555555443333222222333444444555666666666655544
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.48 E-value=1.4 Score=32.46 Aligned_cols=53 Identities=13% Similarity=-0.033 Sum_probs=24.9
Q ss_pred HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 273 CLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 273 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
...++.+++..++..+.-.. |-....-..-...+...|+|.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34455555555555554432 111222222233445556666666666665443
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.36 E-value=3.5 Score=36.51 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=84.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL-YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
.++...-+..+.+.-++.-.+.++. .|+- ..|..|.. -......++.++|++..+.|- ..+..- ......
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~ 243 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHH 243 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcc
Confidence 3444445556666666666666553 2433 23332221 123446677777777665431 111100 000011
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD 174 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (400)
|. .++........+-..+-..+..++-+.|+.++|++.++++.+..+ ..........++.++...+.+.
T Consensus 244 g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-----~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 244 GH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-----NLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred cc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-----ccchhhHHHHHHHHHHhcCCHH
Confidence 11 111122221122233344566677788888888888888876541 1123346677888888888888
Q ss_pred HHHHHHHHHHHcCCCCC-hHhHHHHH
Q 015811 175 KAKELFLQMKYENLNPN-VVTYTSLI 199 (400)
Q Consensus 175 ~a~~~~~~~~~~~~~~~-~~~~~~l~ 199 (400)
++..++.+..+...+.+ ...|+..+
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHH
Confidence 88888888654333222 24455444
No 276
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.19 E-value=1.5 Score=31.63 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 015811 161 SIIIDGLCKEGFVDKAKELFLQMKYENL--NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC 238 (400)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (400)
-.-.....+.|++++|.+.|+.+...-. +-....-..++.+|.+.++++.|...++++++....-...-|...+.+++
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344455678899999998888876521 12334566778888889999999999988888754333345555555554
Q ss_pred hc
Q 015811 239 KN 240 (400)
Q Consensus 239 ~~ 240 (400)
.-
T Consensus 94 ~~ 95 (142)
T PF13512_consen 94 YY 95 (142)
T ss_pred HH
Confidence 43
No 277
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=1.2 Score=36.64 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=68.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 015811 111 GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP 190 (400)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 190 (400)
|.+.+..+...++..-....+++.+...+-++....... ..++. +-...++.+ -.-++++++.++..-++.|+.|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~---~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW---YLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh---hhccc-cHHHHHHHH-HccChHHHHHHHhCcchhcccc
Confidence 445555666666666666677788887777776543110 11111 122233333 2346678888887777788888
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 191 NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
|..+++.++..+.+.+++.+|..+...|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888888877776654
No 278
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.04 E-value=3.8 Score=35.74 Aligned_cols=131 Identities=11% Similarity=0.091 Sum_probs=85.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 015811 193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQG-VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG 271 (400)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (400)
..|...+....+..-.+.|..+|-++.+.+ +.++...+++++..++ .|++..|..+|+.-.... +.++.-....+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 455666666666677888888888888777 4566677777776544 577778888887665542 2223333445555
Q ss_pred HHcCCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 272 FCLTGKINRVKELFVSMESMGCKHD--DFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 272 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
+...++-+.|..+|+.....- ..+ ...|..++..-..-|+...+..+=+++.+.
T Consensus 476 Li~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 667778888888887554321 112 456777777777778877777776666554
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.95 E-value=0.13 Score=26.88 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhh
Q 015811 300 YNILINGYCKNKEVEEALSLYNE 322 (400)
Q Consensus 300 ~~~l~~~~~~~~~~~~A~~~~~~ 322 (400)
|..|...|.+.|++++|+.++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555556666666666666555
No 280
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.84 E-value=4.5 Score=35.92 Aligned_cols=182 Identities=15% Similarity=0.126 Sum_probs=123.5
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
|-|-...-+++..+.++....-...+..+|...| .+-..|..++++|... ..++-..+++++.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3455667788899999999999999999998876 5778889999999888 567788899988887544 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPN-----VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI 162 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
...| ..++.+.+...|.++...=++.. -..|..+.... ..+.+..+.+...+....+ ...-...+..
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg-----~~~~~Vl~qd 210 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG-----EGRGSVLMQD 210 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc-----cchHHHHHHH
Confidence 4444 45888888888888775432211 12444444321 4566777777777766543 2334455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811 163 IIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF 202 (400)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (400)
+-.-|....++.+|++++..+.+..- .|...-..++.-+
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 66778888999999999988776542 3555544454443
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.81 E-value=2.1 Score=31.95 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=93.8
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHH-HHH--HH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFP-DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVV-TFT--SL 87 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~l 87 (400)
..|..-+ -+.+.+..++|+.-|..+.+.|... ..-..........+.|+...|...|+++-.....|-.. -.. .-
T Consensus 60 d~flaAL-~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAAL-KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 4444433 3467788999999999999876442 22233444556778999999999999998765444332 111 12
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
...+...|.++......+-+...+-+.-...-..|.-+-.+.|++..|.++|..+.+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 23456788999988888877765544445555667777789999999999999998754
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.78 E-value=0.1 Score=26.95 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=16.0
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015811 287 SMESMGCKHDDFSYNILINGYCKNKEVEEAL 317 (400)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 317 (400)
+.++.. |-+...|..+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 333433 445555666666666666665553
No 283
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.77 E-value=2.9 Score=33.48 Aligned_cols=176 Identities=12% Similarity=0.047 Sum_probs=93.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc--
Q 015811 165 DGLCKEGFVDKAKELFLQMKYENL--NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN-- 240 (400)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 240 (400)
..-.+.|++++|.+.|+.+..... +-...+-..++.++.+.++++.|+..+++....-......-|..-+.+++.-
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 344577899999999988886521 2233455667777888889999998888888764333334455555555421
Q ss_pred -----CCchh---HHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 015811 241 -----GKMDN---ASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE 312 (400)
Q Consensus 241 -----~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 312 (400)
.|... |..-|+.+++. -|+ +.=...|...+..+... =...=..+.+.|.+.|.
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~r--yPn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQR--YPN-------------SRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHH--CCC-------------CcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Confidence 11111 22222222222 111 11111111111111110 00001245566777788
Q ss_pred HHHHHHHHhhhhhCCCCcC---HHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 313 VEEALSLYNELPFKGIKPT---VVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 313 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
+-.|..-+++|++. .+-+ ...+-.+..+|...|-.++|.+.-+-+..
T Consensus 183 ~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 183 YVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 87777777777765 2212 22344455677777777777666554443
No 284
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.45 E-value=3.2 Score=32.92 Aligned_cols=118 Identities=17% Similarity=0.065 Sum_probs=53.8
Q ss_pred CChhhHHHHHHHHHhccCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHH
Q 015811 60 GQVSLGFVIFGRILRSCFA-PNVVTFTSLIKGLCAESRIVEAAALFTKLKAF-GCEPNVITYNTLINGLCRTGHTIVALN 137 (400)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 137 (400)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444433211 02344455555555566666665555555431 112333444444455555555566666
Q ss_pred HHHHHHcCCCcccccccCChhhHHHHHH-HHHhcCChHHHHHHHHHHH
Q 015811 138 LFKEMTNGNGEIGVVFKPNTVTYSIIID-GLCKEGFVDKAKELFLQMK 184 (400)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~ 184 (400)
.+........ .+......... .+...|+++.+...+....
T Consensus 117 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 117 LLEKALALDP-------DPDLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHcCCC-------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6665554331 11111222222 4555555555555555553
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.35 E-value=0.06 Score=27.80 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=21.4
Q ss_pred CCCCcchHHHHHHHHHccCChhHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVL 31 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~ 31 (400)
.|.|+.+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4678889999999999999998886
No 286
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.34 E-value=3.3 Score=32.81 Aligned_cols=224 Identities=16% Similarity=0.034 Sum_probs=120.9
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHcC-CCcccccccCChhhHHHHHHHHHhcC
Q 015811 94 ESRIVEAAALFTKLKAFGCE-PNVITYNTLINGLCRTGHTIVALNLFKEMTNG-NGEIGVVFKPNTVTYSIIIDGLCKEG 171 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (400)
.+....+...+......... .....+......+...+....+...+...... . .......+......+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL------LPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh------ccchHHHHHHHHHHHHHHh
Confidence 34555555555555544211 12456666777777788888887777776642 1 2445566666667777777
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCC--CCcccHHHHHHHHHhcCCchhHHH
Q 015811 172 FVDKAKELFLQMKYENLNPNVVTYTSLIH-GFCHANDWNEAKGLLIEMVDQGVQ--PNVVSSNVIMNELCKNGKMDNASR 248 (400)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 248 (400)
++..+.+.+.........+ ......... .+...|+++.+...+......... .....+......+...++.+.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 110 KYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 7888888887777643222 122222222 566777777777777776442110 111222222233445566666666
Q ss_pred HHHHHHhCCCCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 249 LLDLMVQCDVRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 249 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
.+....... +. ....+..+...+...++++.+...+....... +.....+..+...+...+..+.+...+.+....
T Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 189 LLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666665543 22 24455555555555666666666666665542 111223333333333444555555555555543
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.16 E-value=9.7 Score=37.70 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=19.9
Q ss_pred CccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 015811 78 APNVVTFTSLIKGLCAES--RIVEAAALFTKLKA 109 (400)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 109 (400)
.|+ .....+|.+|.+.+ ..+.++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 44556777888777 56667666666654
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.13 E-value=7.2 Score=36.14 Aligned_cols=44 Identities=7% Similarity=0.119 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHH-----HHhcCChhhHHHHHHHHHh
Q 015811 28 DTVLSLFKRLNSIGLFPDLYTYSILINC-----FCKMGQVSLGFVIFGRILR 74 (400)
Q Consensus 28 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~ 74 (400)
..|..+++...+.| +......+..+ +....+.+.|+.+|+...+
T Consensus 229 ~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 45666666665554 22222222222 2234466666666666655
No 289
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.10 E-value=4.3 Score=35.71 Aligned_cols=101 Identities=10% Similarity=0.082 Sum_probs=61.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 015811 155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIM 234 (400)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 234 (400)
.++.........+...|+++.+...+...... +.....+...+++...+.|+++.|..+-+-|+...++ ++.......
T Consensus 321 ~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa 398 (831)
T PRK15180 321 QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAA 398 (831)
T ss_pred CCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhheeeec
Confidence 34444444455566678888877777665443 2234556667777777778888888877777765443 333333333
Q ss_pred HHHHhcCCchhHHHHHHHHHhCC
Q 015811 235 NELCKNGKMDNASRLLDLMVQCD 257 (400)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~ 257 (400)
...-..|-++++...|+.+...+
T Consensus 399 ~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 399 GSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ccHHHHhHHHHHHHHHHHHhccC
Confidence 33445566777777777776554
No 290
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=9.2 Score=37.06 Aligned_cols=117 Identities=14% Similarity=0.071 Sum_probs=74.3
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHhcCCh--hhHHHHHHHHHhccCCccHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYSILINCFCKMGQV--SLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.-|..|+..|...|+.++|++++.+..... -.--...+..++.-+...+.. +-.++.-+...+........++..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 357889999999999999999999987632 111123444566666666654 666666666655432211111211
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015811 87 ------------LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR 128 (400)
Q Consensus 87 ------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (400)
.+-.|......+-+..+++.+....-.++....+.++..|.+
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 223455667778888889888866545566777777777764
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.97 E-value=6.3 Score=35.00 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhCCCCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811 230 SNVIMNELCKNGKMDNASRLLDLMVQCDVRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESM 291 (400)
Q Consensus 230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (400)
-..+..++-+.|+.++|.+.+.++.+..... .......|+.++...+.+.++..++.+..+.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3445666667788888888887776543221 2335566777777788888888877776543
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=2.6 Score=34.75 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=52.0
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHH
Q 015811 188 LNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG---VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFT 264 (400)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 264 (400)
.+.+..+...++..-...++++.++..+-++..+. ..++.. -...++.+ -.-++++++.++..=++-|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 33344444444444444556666666665555431 111111 11222222 23345566666666666666666666
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811 265 YNTLMDGFCLTGKINRVKELFVSMES 290 (400)
Q Consensus 265 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (400)
++.++..+.+.+++.+|..+...|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666666555544
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.43 E-value=3.4 Score=30.54 Aligned_cols=87 Identities=13% Similarity=-0.057 Sum_probs=44.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNT-LINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
.-.+.++.+++..++..+.-. .|....... -...+...|++.+|+++|+.+.... |.......|+..|.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--------~~~p~~kALlA~CL 88 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--------PGFPYAKALLALCL 88 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--------CCChHHHHHHHHHH
Confidence 344556777777777776654 343332221 2234556777777777777766543 33344444544444
Q ss_pred hcCChHHHHHHHHHHHHc
Q 015811 169 KEGFVDKAKELFLQMKYE 186 (400)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~ 186 (400)
....-..-...-+++.+.
T Consensus 89 ~~~~D~~Wr~~A~evle~ 106 (160)
T PF09613_consen 89 YALGDPSWRRYADEVLES 106 (160)
T ss_pred HHcCChHHHHHHHHHHhc
Confidence 433333333333444444
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.25 E-value=6.9 Score=33.73 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=47.7
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811 191 NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP---NVVSSNVIMNELCKNGKMDNASRLLDLMVQ 255 (400)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (400)
...++..++..+.+.|+++.|...+..+...+... .+.....-+...-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677888888889999999998888887653222 344455556677788888888888877766
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.13 E-value=3.4 Score=29.98 Aligned_cols=51 Identities=8% Similarity=-0.076 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 275 TGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 275 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
.++++++..++..+.-.. |.....-..-...+...|+|++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555554332 111111122233344555555555555555544
No 296
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.86 E-value=3.2 Score=33.63 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=64.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 015811 122 LINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHG 201 (400)
Q Consensus 122 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 201 (400)
=|.+++..+++.+++...-+.-+.. -+.........|-.|.+.+++..+.++-..-....-.-+...|..++..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~p------EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaEL 162 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVP------EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAEL 162 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCc------ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHH
Confidence 4788899999999988766655443 2445566777788899999999999988887765333344557777776
Q ss_pred HHh-----cCCHHHHHHHH
Q 015811 202 FCH-----ANDWNEAKGLL 215 (400)
Q Consensus 202 ~~~-----~~~~~~a~~~~ 215 (400)
|.. .|.+++|+++.
T Consensus 163 yLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 163 YLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHhccccHHHHHHHH
Confidence 654 59999998887
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.86 E-value=0.48 Score=24.16 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 300 YNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 300 ~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
|..+..+|...|++++|+..|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3334444444444444444444443
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.81 E-value=6.9 Score=32.76 Aligned_cols=134 Identities=12% Similarity=0.124 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cC----ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811 97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCR--TG----HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE 170 (400)
Q Consensus 97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (400)
+++...+++.+.+.|...+..+|-+....... .. ....|..+|+.|++..+-. ..++...+..++.. ..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL---Ts~~D~~~a~lLA~--~~ 152 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL---TSPEDYPFAALLAM--TS 152 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---cCccchhHHHHHhc--cc
Confidence 44556788899999988888776654333333 22 3456888999998876321 22334444444433 33
Q ss_pred CCh----HHHHHHHHHHHHcCCCCChH--hHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 015811 171 GFV----DKAKELFLQMKYENLNPNVV--TYTSLIHGFCHAND--WNEAKGLLIEMVDQGVQPNVVSSNVIMN 235 (400)
Q Consensus 171 ~~~----~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 235 (400)
++. +.+..+|+.+.+.|+..+.. ....++..+....+ ...+.++++.+.+.|+++....|..+.-
T Consensus 153 ~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 153 EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 333 45667777777767655432 22223322222222 3467788888888888877777665543
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.67 E-value=0.51 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhh
Q 015811 302 ILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 302 ~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
.+..++...|++++|...+++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444433
No 300
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.42 E-value=2.2 Score=28.23 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015811 28 DTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRIL 73 (400)
Q Consensus 28 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 73 (400)
-++.+-++.+...+..|++......+++|.+.+++..|..+++-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555555555555566666666666666666666666665554
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.09 E-value=6.1 Score=30.84 Aligned_cols=30 Identities=17% Similarity=0.060 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
+.+||-+.--+...|+++.|.+.|+...+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 344555555555555555555555555544
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.05 E-value=3.7 Score=31.60 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=51.2
Q ss_pred HHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh---CCCCCChhhHHHHHHHhhcCCcc
Q 015811 307 YCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG---NDVAADTCTYRTFIDGLCVRPQV 383 (400)
Q Consensus 307 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 383 (400)
+.+.|+ +.|...|-.+...+.--++.....|...| ...+.+++..++.+..+ .+-.+|+..+.+|...+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 56666666666554443444444444433 45677777777777663 23366777888888888888888
Q ss_pred hhhHhhh
Q 015811 384 RFTYARR 390 (400)
Q Consensus 384 ~~a~~~~ 390 (400)
+.|+-+.
T Consensus 195 e~AYiwa 201 (203)
T PF11207_consen 195 EQAYIWA 201 (203)
T ss_pred hhhhhhe
Confidence 8876553
No 303
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.04 E-value=1.7 Score=36.18 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=26.0
Q ss_pred HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811 236 ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
-|.++|.+++|+..|....... +-++.++..-..+|.+...+..|+.--....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3555555555555555544432 1244445445555555555554444444433
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.02 E-value=0.4 Score=25.84 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=15.0
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLN 38 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 38 (400)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555666666666666666665543
No 305
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.99 E-value=14 Score=34.80 Aligned_cols=65 Identities=8% Similarity=0.078 Sum_probs=40.2
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-------hhhHHHHHHHHHhc
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ-------VSLGFVIFGRILRS 75 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 75 (400)
.+...| .+|-.|.+.|++++|.++....... .......+...+..+....+ -++...-|++..+.
T Consensus 110 ~~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 344556 5777899999999999999555432 34455667777777766432 23445555555544
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.95 E-value=1 Score=22.89 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811 49 YSILINCFCKMGQVSLGFVIFGRILR 74 (400)
Q Consensus 49 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 74 (400)
|..+..++...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33344444444444444444444433
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.75 E-value=2.8 Score=27.76 Aligned_cols=27 Identities=4% Similarity=0.060 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811 295 HDDFSYNILINGYCKNKEVEEALSLYN 321 (400)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~~~~A~~~~~ 321 (400)
|++....+.+++|.+.+++..|.++++
T Consensus 40 P~P~ii~aaLrAcRRvND~alAVR~lE 66 (103)
T cd00923 40 PEPKVIEAALRACRRVNDFALAVRILE 66 (103)
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333333333333333333333333333
No 308
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.30 E-value=17 Score=34.49 Aligned_cols=252 Identities=11% Similarity=-0.007 Sum_probs=129.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811 85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII 164 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 164 (400)
...+..+.+.+++....+.+.. .+.+...-.....+....|+.++|....+.+-..+ ...+..+..++
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-------~~~p~~cd~l~ 170 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-------KSLPNACDKLF 170 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCChHHHHHH
Confidence 3445556667777766652211 13455555667778888899888888777776655 45677788888
Q ss_pred HHHHhcCChHHHH--HHHHHHHHcCCCCChHhHHHHHHHHHhc------------CCHHHHHHHHHHHHHCCCCCCcccH
Q 015811 165 DGLCKEGFVDKAK--ELFLQMKYENLNPNVVTYTSLIHGFCHA------------NDWNEAKGLLIEMVDQGVQPNVVSS 230 (400)
Q Consensus 165 ~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~ 230 (400)
..+.+.|...... +=+..+...| +...-..+...+... .+...+...+. .++++...-
T Consensus 171 ~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~ 242 (644)
T PRK11619 171 SVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTR 242 (644)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhH
Confidence 8888666544332 2222222222 222222222211000 11111111111 112222111
Q ss_pred HHHHHHH--HhcCCchhHHHHHHHHHhCC-CCCc--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015811 231 NVIMNEL--CKNGKMDNASRLLDLMVQCD-VRPN--AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILIN 305 (400)
Q Consensus 231 ~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 305 (400)
..++.++ ....+.+.|..++....... ..+. ..+...+.......+...++...+...... ..+......-+.
T Consensus 243 ~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r 320 (644)
T PRK11619 243 QMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVR 320 (644)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHH
Confidence 2122222 23445678888887764432 2211 122334443333332245556565554332 234445555566
Q ss_pred HHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 306 GYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 306 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
.....++++.+...+..|....-. ...-.--+..++...|+.++|...|+.+.
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666888888888888887653211 22333345566666788888888888764
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.29 E-value=4 Score=27.35 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=19.1
Q ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 66 FVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
.+-+..+......|++.+..+.+++|.+.+++..|.++|+.++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444555555555555555555555555555444
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.16 E-value=5.7 Score=28.91 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=32.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNVITYN-TLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
...++++++..+++.|.-. .|+..-.. .-.-.+...|++++|+++|+.+.+..
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3467777777777777655 33332221 12233556788888888888877654
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.14 E-value=1.3 Score=22.37 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 015811 86 SLIKGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
.+..++...|++++|.+.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444443
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.80 E-value=7.7 Score=29.96 Aligned_cols=79 Identities=9% Similarity=-0.028 Sum_probs=59.2
Q ss_pred HHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCh
Q 015811 56 FCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF---GCEPNVITYNTLINGLCRTGHT 132 (400)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 132 (400)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+. +-.+|+..+.+|+..+.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 568888888887765556666666666665 77889999999888764 2357788999999999999999
Q ss_pred HHHH
Q 015811 133 IVAL 136 (400)
Q Consensus 133 ~~a~ 136 (400)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.60 E-value=0.91 Score=24.34 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 299 SYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 299 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555666666666666555544
No 314
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=89.40 E-value=18 Score=33.71 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC----CCCcCHHHHH
Q 015811 261 NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK----GIKPTVVTYN 336 (400)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~ 336 (400)
+......++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..+.+.|+......+.+.+.+. |...+....+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~ 481 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLD 481 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 344455556666666666666666665533211 1233445555556666655555544444422 1111111111
Q ss_pred HH---------------HH---HHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 015811 337 TL---------------FH---GLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDG 376 (400)
Q Consensus 337 ~l---------------~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (400)
.+ .. ...+.|++.+|.+.+-.+.+.++.|...-...|.++
T Consensus 482 ~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 482 NIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ----------------------------------------------------------
T ss_pred HhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 00 00 113346777777777777776676666544444443
No 315
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.36 E-value=11 Score=31.01 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh-----hCCCCCChhh
Q 015811 299 SYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ-----GNDVAADTCT 369 (400)
Q Consensus 299 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 369 (400)
+++.....|..+|.+.+|.++.++....+ +.+...+..|+..+...|+--.+.+.++++. +.|+..|...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 45666778889999999999999888753 3467778888889999999888888777765 3466655544
No 316
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.34 E-value=8.1 Score=29.77 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=54.3
Q ss_pred HHHhcCChhhHHHHHHHHHhccCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015811 55 CFCKMGQVSLGFVIFGRILRSCFAPN----VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 130 (400)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 130 (400)
-+...|++++|..-|...+..-+... ...|..-..++.+.+.++.|+.--.+.++.+ +....+...-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 34556777777777777766532211 2234444456667777777777666666654 223333334455667777
Q ss_pred ChHHHHHHHHHHHcCC
Q 015811 131 HTIVALNLFKEMTNGN 146 (400)
Q Consensus 131 ~~~~a~~~~~~~~~~~ 146 (400)
.+++|+.-|+++....
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 7777777777777665
No 317
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.27 E-value=36 Score=36.92 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=99.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHh
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFP--DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCA 93 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (400)
.+..+-.+.+.+..|...++.-.....+- ....+..+...|...++++...-+...... +...+ .-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 55566778899999999998842111111 223344444489999999988777664221 22222 33445567
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH-HHHHHHHhcCC
Q 015811 94 ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS-IIIDGLCKEGF 172 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 172 (400)
.|++..|...|+.+.+.+ ++...+++.++......|.+...+-..+...... .+....++ .-..+.-+.++
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-------se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-------SEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-------CHHHHHHHHHHHHHHhhhcc
Confidence 899999999999999885 4457788888888888888888877666655443 23333333 33444567777
Q ss_pred hHHHHHHHH
Q 015811 173 VDKAKELFL 181 (400)
Q Consensus 173 ~~~a~~~~~ 181 (400)
++.......
T Consensus 1534 wD~~e~~l~ 1542 (2382)
T KOG0890|consen 1534 WDLLESYLS 1542 (2382)
T ss_pred hhhhhhhhh
Confidence 777776655
No 318
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.24 E-value=8.4 Score=29.55 Aligned_cols=89 Identities=9% Similarity=0.050 Sum_probs=58.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHh
Q 015811 269 MDGFCLTGKINRVKELFVSMESMGCKHDDFSYN-----ILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLF 343 (400)
Q Consensus 269 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 343 (400)
...+...++++.|...++..... |....+. .|.+.....|.+++|+.+++.....+. .......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 45667778888888888777653 2222222 344556778888888888887765432 2222333345778
Q ss_pred ccchHHHHHHHHHHHhhCC
Q 015811 344 EIRQAERALKLFVEMQGND 362 (400)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~ 362 (400)
..|+.++|..-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8888888888888887764
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.05 E-value=5.1 Score=26.86 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=51.5
Q ss_pred chHHHHHHHHHccCC--hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKH--YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
..|+.--..+....+ .=+..+-++.+...++.|++......+.+|.+.+++..|..+++-+...- .+....|..+++
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 444444445554444 33777888888888889999999999999999999999999999887642 223336666654
Q ss_pred H
Q 015811 90 G 90 (400)
Q Consensus 90 ~ 90 (400)
-
T Consensus 88 E 88 (108)
T PF02284_consen 88 E 88 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.04 E-value=4.9 Score=31.39 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChHhHH
Q 015811 119 YNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN--LNPNVVTYT 196 (400)
Q Consensus 119 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 196 (400)
.+..++.+.+.+...+++...++-.+.. |.+...-..++..++-.|+|++|..-++..-+.. ..+...+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 3445556666777777777776665543 4556666677777777777777776666554431 122334555
Q ss_pred HHHHH
Q 015811 197 SLIHG 201 (400)
Q Consensus 197 ~l~~~ 201 (400)
.++.+
T Consensus 77 ~lir~ 81 (273)
T COG4455 77 HLIRC 81 (273)
T ss_pred HHHHH
Confidence 55543
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.70 E-value=0.28 Score=35.82 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=46.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 015811 233 IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE 312 (400)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 312 (400)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++... ..-...++..|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 344555566666666666666655444556666666777776666566655555111 1222345555566666
Q ss_pred HHHHHHHHhhhh
Q 015811 313 VEEALSLYNELP 324 (400)
Q Consensus 313 ~~~A~~~~~~~~ 324 (400)
+++|.-++.++-
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666666665543
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.65 E-value=0.26 Score=35.99 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=54.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES 95 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (400)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356677777888888888888877665556777888888888887767766666511 1122244566666666
Q ss_pred CHHHHHHHHHHH
Q 015811 96 RIVEAAALFTKL 107 (400)
Q Consensus 96 ~~~~a~~~~~~~ 107 (400)
.++++.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666655543
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=20 Score=32.88 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT 159 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+..-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+....+-....+.+ .
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g------------~ 723 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG------------K 723 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc------------c
Confidence 334455555555555555555555554432 2234444444555443333333333332 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQ 182 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~ 182 (400)
.|...-++...|+++++.+++..
T Consensus 724 ~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cchHHHHHHHcCCHHHHHHHHHh
Confidence 22233344455666666555543
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.94 E-value=0.9 Score=22.76 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=8.0
Q ss_pred HHHhcCCHHHHHHHHhhhh
Q 015811 306 GYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 306 ~~~~~~~~~~A~~~~~~~~ 324 (400)
++.+.|++++|...|++++
T Consensus 9 ~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 3334444444444444443
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.59 E-value=7 Score=30.58 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=24.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEM 142 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 142 (400)
+..+.+.+...+++...+.-.+.. +.+...-..+++.++-.|++++|+.-++-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334444455555555444444432 223334444455555555555554444433
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.55 E-value=10 Score=28.65 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811 313 VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGN 361 (400)
Q Consensus 313 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (400)
+++|...|++..+. .|+...|+.-+... ++|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 44555555555544 67777777665544 2345555555443
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.52 E-value=24 Score=32.81 Aligned_cols=275 Identities=13% Similarity=0.046 Sum_probs=155.3
Q ss_pred hhhHHHHHHHHHhccCCccHHHHHHHHHH---HHhcCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhcC-
Q 015811 62 VSLGFVIFGRILRSCFAPNVVTFTSLIKG---LCAESRIVEAAALFTKLKA-------FGCEPNVITYNTLINGLCRTG- 130 (400)
Q Consensus 62 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 130 (400)
...+.++++...+.|.. .......++.. +....+.+.|..+|+...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 46788888888887622 22222222222 3356789999999999877 44 3445666777777643
Q ss_pred ----ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH--
Q 015811 131 ----HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK-EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFC-- 203 (400)
Q Consensus 131 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 203 (400)
+.+.|+.++.+....+ .|+....-..+..... ..+...|.++|....+.|.. ..+-.+..+|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G 373 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELG 373 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhC
Confidence 5677999999988876 4554443333332222 35678999999999988743 22222222222
Q ss_pred --hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-H---Hc---
Q 015811 204 --HANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-F---CL--- 274 (400)
Q Consensus 204 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~---~~--- 274 (400)
-..+...|..++.+.-+.| .|........+..+.. +.++.+.-.+..+.+.+.. ...+-...+.. . ..
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~ 450 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRG 450 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccc
Confidence 2346889999999998887 3332222222333344 7777777777777666532 22222222111 1 11
Q ss_pred -CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHhhhhhCCCCcCHHHHHHHHH----HHhcc
Q 015811 275 -TGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN----KEVEEALSLYNELPFKGIKPTVVTYNTLFH----GLFEI 345 (400)
Q Consensus 275 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~ 345 (400)
..+.+.+...+.+....| +......+...|..- .+++.|...+......+ ....|+ +.. +....
T Consensus 451 ~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~ 523 (552)
T KOG1550|consen 451 VISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIK 523 (552)
T ss_pred cccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcc
Confidence 124556666666666554 444455555555432 34677777777666553 222222 111 11112
Q ss_pred chHHHHHHHHHHHhhC
Q 015811 346 RQAERALKLFVEMQGN 361 (400)
Q Consensus 346 ~~~~~a~~~~~~~~~~ 361 (400)
. ...|.+++.+..+.
T Consensus 524 ~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 524 V-LHLAKRYYDQASEE 538 (552)
T ss_pred h-hHHHHHHHHHHHhc
Confidence 2 56666666665543
No 328
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.32 E-value=29 Score=33.50 Aligned_cols=231 Identities=14% Similarity=0.068 Sum_probs=123.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChh-------hHHHHH-HHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVI-------TYNTLI-NGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS 161 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
.....+++.+|..++.++...-..|+.. .++.+- ......|++++|.++.+.....-+... ..+....+.
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~--~~~r~~~~s 501 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA--YRSRIVALS 501 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--chhhhhhhh
Confidence 3446788999999998887542232221 233332 223457889999998887765431110 234456667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH-----HHHHhcCCH--HHHHHHHHHHHHCC---CC---CCcc
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLI-----HGFCHANDW--NEAKGLLIEMVDQG---VQ---PNVV 228 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~ 228 (400)
.+..+..-.|++++|..+.....+..-..+...+.... ..+...|+. .+.+..+....... .+ +-..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 77788888999999999888776543233444333322 224455632 23333333332221 11 1123
Q ss_pred cHHHHHHHHHhc-CCchhHHHHHHHHHhCCCCCcHH--HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC----CHHHHH
Q 015811 229 SSNVIMNELCKN-GKMDNASRLLDLMVQCDVRPNAF--TYNTLMDGFCLTGKINRVKELFVSMESMGCKH----DDFSYN 301 (400)
Q Consensus 229 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 301 (400)
++..++.++.+. +...++..-+.-.......|-.. .+..|+......|+++.|...+.++......+ +..+-.
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 344444455441 11222222222222222122222 22367788889999999999999886543222 222212
Q ss_pred HHH--HHHHhcCCHHHHHHHHhh
Q 015811 302 ILI--NGYCKNKEVEEALSLYNE 322 (400)
Q Consensus 302 ~l~--~~~~~~~~~~~A~~~~~~ 322 (400)
..+ ......|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 222 234567888888777665
No 329
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.31 E-value=8.7 Score=34.03 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=33.3
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 015811 22 AKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVS 63 (400)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 63 (400)
..++.++..++++..+...|.......++.-...|.+.|...
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 346889999999999998887666666888888888877654
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.15 E-value=0.93 Score=21.52 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=12.4
Q ss_pred HHHHHHHHHccCChhHHHHHHH
Q 015811 14 FNILLGCLAKNKHYDTVLSLFK 35 (400)
Q Consensus 14 ~~~l~~~~~~~~~~~~a~~~~~ 35 (400)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555666666666665554
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.12 E-value=1.1 Score=24.77 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 303 LINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 303 l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
+..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666665543
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.92 E-value=16 Score=30.10 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 015811 28 DTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIF 69 (400)
Q Consensus 28 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 69 (400)
.+|+++|.-+.... -...+-..++.++....+..+|...+
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHH
Confidence 56788887776642 12233344555555555555554443
No 333
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.85 E-value=12 Score=28.87 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=45.8
Q ss_pred HHhcCCchhHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 015811 237 LCKNGKMDNASRLLDLMVQCDVRPN-----AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNK 311 (400)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 311 (400)
+...|++++|..-|...+..- ++. ...|..-..++.+.+.++.|..--...++.+ +........-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 445566666666666555542 211 1223333445556666666666655555554 222223333344566666
Q ss_pred CHHHHHHHHhhhhhC
Q 015811 312 EVEEALSLYNELPFK 326 (400)
Q Consensus 312 ~~~~A~~~~~~~~~~ 326 (400)
.+++|+.=|+++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 667777666666654
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.64 E-value=1.7 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=15.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHh
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNS 39 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 39 (400)
+|..+...+.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555566666666666666665544
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.64 E-value=12 Score=28.36 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHH---HHhcCChh-------hHHHHHHHHHhccCCcc-HHHHHHHHHHHHhcC
Q 015811 27 YDTVLSLFKRLNSIGLFPDLYTYSILINC---FCKMGQVS-------LGFVIFGRILRSCFAPN-VVTFTSLIKGLCAES 95 (400)
Q Consensus 27 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~-------~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 95 (400)
++.|.+.++.-...+ +.|...++.-.-+ +++..+.. +|..-|++.+.. .|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 456666666654444 4555554443333 33444433 444444444544 343 345555666665443
Q ss_pred -----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 96 -----------RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 96 -----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
.+++|...|++.... .|+...|+.-+.... +|-++..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 255666666666665 789999998887753 4566666665543
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.53 E-value=2.1 Score=21.30 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=10.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 015811 88 IKGLCAESRIVEAAALFTKLKA 109 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~ 109 (400)
..++.+.|++++|.+.|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 337
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.42 E-value=33 Score=33.18 Aligned_cols=226 Identities=11% Similarity=0.014 Sum_probs=123.2
Q ss_pred HHhcCChHHHHHHHHHHHcCCCcccccccCChh-------hHHHHH-HHHHhcCChHHHHHHHHHHHHc----CCCCChH
Q 015811 126 LCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTV-------TYSIII-DGLCKEGFVDKAKELFLQMKYE----NLNPNVV 193 (400)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 193 (400)
.....++.+|..++.++...-+ .|+.. .++.+- ......|+++.|.++.+..... -..+...
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~------~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK------APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC------cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 3457889999999988876542 22211 233332 2345678999999988887654 1223445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH-----HHHHHhcCCchhH--HHHHHHHHhCC---CC---C
Q 015811 194 TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVI-----MNELCKNGKMDNA--SRLLDLMVQCD---VR---P 260 (400)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a--~~~~~~~~~~~---~~---~ 260 (400)
.+..+..+..-.|++++|..+..+..+..-.-+...+... ...+...|+...+ ...+....... .+ +
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 5667777788889999999998887765322233333222 2345566743322 23333332211 11 1
Q ss_pred cHHHHHHHHHHHHcC-CChHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHhhhhhCC----CCcCHH
Q 015811 261 NAFTYNTLMDGFCLT-GKINRVKELFVSMESMGCKHDDFSY--NILINGYCKNKEVEEALSLYNELPFKG----IKPTVV 333 (400)
Q Consensus 261 ~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~~~ 333 (400)
-..+...+..++.+. +...++..-++--......|-...+ ..|+.+....|++++|...++++.... ..++..
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 123344444554441 1122222222222222222222222 367788889999999999999887542 233333
Q ss_pred HHHHHHH--HHhccchHHHHHHHHHH
Q 015811 334 TYNTLFH--GLFEIRQAERALKLFVE 357 (400)
Q Consensus 334 ~~~~l~~--~~~~~~~~~~a~~~~~~ 357 (400)
+-...+. .....|+...+.....+
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 3333333 23457777777666555
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.34 E-value=1.7 Score=23.99 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=12.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHh
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNS 39 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~ 39 (400)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 339
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.11 E-value=14 Score=28.48 Aligned_cols=124 Identities=10% Similarity=0.045 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-----HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHH--
Q 015811 194 TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNV-----IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYN-- 266 (400)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 266 (400)
.|..++.... .+.. +.....+.+.... ...+|.. +...+...+++++|...++..... |....+.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l 127 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence 3444444432 2333 4444555555442 2233332 345677888899998888877653 2222232
Q ss_pred ---HHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC
Q 015811 267 ---TLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG 327 (400)
Q Consensus 267 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 327 (400)
.|.+.....|.++.|...++.....+ ........-.+.+...|+-++|..-|++..+.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34556677888999988888777653 233344556678888999999999998888764
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.07 E-value=5.8 Score=33.27 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=66.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChH
Q 015811 200 HGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKIN 279 (400)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 279 (400)
..|.+.|.+++|+..+...+... +-+..++..-..+|.+...+..|+.=.......+ ..-...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 46889999999999998877653 3378888888889999999888877666665543 222344555555555667777
Q ss_pred HHHHHHHHHHhcCCCCC
Q 015811 280 RVKELFVSMESMGCKHD 296 (400)
Q Consensus 280 ~a~~~~~~~~~~~~~~~ 296 (400)
+|.+-++...+. .|+
T Consensus 183 EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhHHHHHhh--Ccc
Confidence 777777777765 455
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.06 E-value=25 Score=31.57 Aligned_cols=181 Identities=13% Similarity=0.147 Sum_probs=116.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh
Q 015811 78 APNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT 157 (400)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 157 (400)
..|.....+++..+.....+.-.+.+-.+|...| .+-..|..++.+|... ..+.-..+++++.+.. -+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--------fnD 131 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--------FND 131 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--------chh
Confidence 3466677788888888888888888888888775 4667788888888877 5667778888777643 333
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcccHH
Q 015811 158 VTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP--N---VVTYTSLIHGFCHANDWNEAKGLLIEMVDQ-GVQPNVVSSN 231 (400)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 231 (400)
.....-+..+...++.+.+..+|.++...-++. + ...|..+... -..+.+....+..++... |...-...+.
T Consensus 132 vv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 132 VVIGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 444444444444477788888888776542210 1 1234444432 135667777777766654 3333445556
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015811 232 VIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGF 272 (400)
Q Consensus 232 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (400)
.+-.-|....++.+|++++..+.+.+ ..|...-..++..+
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 66677788888888888888887765 44555555555443
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.00 E-value=2.6 Score=21.28 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILR 74 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 74 (400)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555556666666666666665554
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.85 E-value=18 Score=29.63 Aligned_cols=128 Identities=11% Similarity=-0.025 Sum_probs=86.5
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhC-----CC-CCC-------HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSI-----GL-FPD-------LYTYSILINCFCKMGQVSLGFVIFGRILRSCFA 78 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 78 (400)
.....-.+.+.-..||..|++.-++-.+. +. .+. ......-|++++..+++.+++.+.-+..+..-+
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 34444555666778999999888876432 01 111 123445689999999999998877666554323
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-----hcCChHHHHHHH
Q 015811 79 PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC-----RTGHTIVALNLF 139 (400)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 139 (400)
....+...=|-.|.+.+.+..+.++-....+.--..+...|..++..|. =.|.+++|.++.
T Consensus 116 lPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3344556666778899999999998888876522334445776666554 479999999987
No 344
>PRK09687 putative lyase; Provisional
Probab=85.58 E-value=20 Score=29.86 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=7.4
Q ss_pred cHHHHHHHHHHHHcCCC
Q 015811 261 NAFTYNTLMDGFCLTGK 277 (400)
Q Consensus 261 ~~~~~~~l~~~~~~~~~ 277 (400)
+..+-...+.++.+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33344444444444444
No 345
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.84 E-value=21 Score=29.49 Aligned_cols=63 Identities=6% Similarity=0.020 Sum_probs=36.5
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811 259 RPNAFTYNTLMDGFCLTGKINRVKELFVSMESM-GCKHDDFSYNILINGYCKNKEVEEALSLYN 321 (400)
Q Consensus 259 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 321 (400)
.++..+...++..++..+++....++|...... +...|...|..++......|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 455555566666666666666666666655443 334455566666666666666555555444
No 346
>PRK09687 putative lyase; Provisional
Probab=84.81 E-value=21 Score=29.64 Aligned_cols=235 Identities=10% Similarity=-0.033 Sum_probs=146.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCChhh
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI----VEAAALFTKLKAFGCEPNVIT 118 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 118 (400)
.+|.......+.++...|.. .+...+..+... +|...-...+.++...|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 46777777777788777753 344444445443 3566666677777777763 4677777776443 566666
Q ss_pred HHHHHHHHHhcCCh-----HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 015811 119 YNTLINGLCRTGHT-----IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVV 193 (400)
Q Consensus 119 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 193 (400)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++..
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---------D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~ 174 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---------DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGD 174 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---------CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHH
Confidence 66666666655422 233444443332 3455666677777877776 4566666666643 4555
Q ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015811 194 TYTSLIHGFCHAN-DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGF 272 (400)
Q Consensus 194 ~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (400)
.-...+.++.+.+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~AL 245 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAA 245 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHH
Confidence 5556666666543 24466666666664 34667777788888888884 5666665555543 2 234677788
Q ss_pred HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015811 273 CLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC 308 (400)
Q Consensus 273 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (400)
...|+. +|...+..+.+. .||...-...+.++.
T Consensus 246 g~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 888885 688888888764 347766666666554
No 347
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.73 E-value=24 Score=30.11 Aligned_cols=139 Identities=12% Similarity=-0.009 Sum_probs=96.4
Q ss_pred CCCCCcchHHHHHHHHHccCC------------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015811 6 PSPPPVSSFNILLGCLAKNKH------------YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRIL 73 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 73 (400)
..|.|+.+|-.++..--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.+...+.++.++
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467889999888865433221 456678899988875 5678888999999999999999999999999
Q ss_pred hccCCccHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc------CC----CCChh-------hHHHHHHHHHhcCChH
Q 015811 74 RSCFAPNVVTFTSLIKGLCA---ESRIVEAAALFTKLKAF------GC----EPNVI-------TYNTLINGLCRTGHTI 133 (400)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~~~-------~~~~l~~~~~~~~~~~ 133 (400)
...+ -+...|...+..... .-.+.....+|.+..+. +. .+... .+..+...+...|..+
T Consensus 93 ~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 93 FKNP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence 8743 377788888776554 23456666666554421 11 01111 2333344455789999
Q ss_pred HHHHHHHHHHcCC
Q 015811 134 VALNLFKEMTNGN 146 (400)
Q Consensus 134 ~a~~~~~~~~~~~ 146 (400)
.|..+++.+.+-+
T Consensus 172 ~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 172 RAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 348
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.36 E-value=33 Score=31.42 Aligned_cols=96 Identities=8% Similarity=0.040 Sum_probs=71.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhhHHHHHHHHHhc-cCC-ccHHHHHHHHHH
Q 015811 14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFC-KMGQVSLGFVIFGRILRS-CFA-PNVVTFTSLIKG 90 (400)
Q Consensus 14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~ 90 (400)
|......=.+.|..+.+.++|++... |++.+...|...+..+. ..|+.+.....|+..... |.. .+...|...|..
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 44445555678899999999999875 56778888888776554 457777888888887763 211 255678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 015811 91 LCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~ 110 (400)
-..++++.....++++.++.
T Consensus 161 en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccccHHHHHHHHHHHHhh
Confidence 88889999999999998864
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.46 E-value=2.3 Score=26.87 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHhhhhhCCCCcC--HHHHHHHHHHHhccchHHHHHHHH
Q 015811 309 KNKEVEEALSLYNELPFKGIKPT--VVTYNTLFHGLFEIRQAERALKLF 355 (400)
Q Consensus 309 ~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~ 355 (400)
..++.++|+..|+...+.-..|. -.++..++.+++..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777766665422221 124445566666666666666543
No 350
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.83 E-value=25 Score=28.91 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-------HHHHHHhcCCchhHHHHH----HHHHhCCCCCcHHHHH
Q 015811 198 LIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNV-------IMNELCKNGKMDNASRLL----DLMVQCDVRPNAFTYN 266 (400)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~ 266 (400)
+.+-..+.+++++|+..+.++...|+..+..+.+. +...|...|+.....++. +.|.+..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHcCCC-hHHHHHHHHHHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811 267 TLMDGFCLTGK-INRVKELFVSMESMGCKHDDFSY-----NILINGYCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 267 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~ 325 (400)
.++..+....+ ++....+.....+.......... ..++..+.+.|.+.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.36 E-value=6.2 Score=25.03 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=19.4
Q ss_pred cCCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 015811 274 LTGKINRVKELFVSMESMGCKHDD--FSYNILINGYCKNKEVEEALS 318 (400)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~ 318 (400)
...+.++|...|....+.-..+.. .++..++.+|+..|++.+++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555443211111 133444445555555554444
No 352
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.58 E-value=31 Score=31.77 Aligned_cols=84 Identities=18% Similarity=0.108 Sum_probs=62.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-....+.| . .|....
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~-----~N~AF~ 729 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-K-----NNLAFL 729 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-c-----cchHHH
Confidence 566789999999999999999998877543 4567777778888776666666666655 2 233445
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 015811 125 GLCRTGHTIVALNLFKEMT 143 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~ 143 (400)
+|...|+++++++++..-.
T Consensus 730 ~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHcCCHHHHHHHHHhcC
Confidence 6677899999999887643
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.85 E-value=14 Score=24.75 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015811 26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFT 105 (400)
Q Consensus 26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 105 (400)
..++|..+-+-+...+-. ...+-..-+..+...|+++.|..+.+.. ..||...|.+|-.. +.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 356666666666543311 1222222233456677777777766554 25676666665443 5666666666666
Q ss_pred HHHHcCCCCChhhH
Q 015811 106 KLKAFGCEPNVITY 119 (400)
Q Consensus 106 ~~~~~~~~~~~~~~ 119 (400)
++...| .|....|
T Consensus 93 rla~sg-~p~lq~F 105 (115)
T TIGR02508 93 RLAASG-DPRLQTF 105 (115)
T ss_pred HHHhCC-CHHHHHH
Confidence 666665 4444433
No 354
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.75 E-value=53 Score=31.27 Aligned_cols=78 Identities=9% Similarity=0.029 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHH
Q 015811 173 VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL 252 (400)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 252 (400)
..++...+....... .+......-+....+.++++.+...+..|.... .....-..-+.+++...|+.++|...|+.
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444433221 233334444444556667766666666654321 22333444555665666777777777666
Q ss_pred H
Q 015811 253 M 253 (400)
Q Consensus 253 ~ 253 (400)
+
T Consensus 372 ~ 372 (644)
T PRK11619 372 L 372 (644)
T ss_pred H
Confidence 5
No 355
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.79 E-value=19 Score=25.42 Aligned_cols=61 Identities=8% Similarity=0.115 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811 64 LGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING 125 (400)
Q Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (400)
+..+.+..+...++.|++.+....++++.+.+|+..|.++|+-++.. +.+....|..++.-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 34555666666777788888888888888888888888888877654 12333345555543
No 356
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.74 E-value=32 Score=28.07 Aligned_cols=199 Identities=13% Similarity=0.102 Sum_probs=111.9
Q ss_pred cCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--C
Q 015811 154 KPNTVTYSIIIDG-LCKEGFVDKAKELFLQMKYENLNPNV---VTYTSLIHGFCHANDWNEAKGLLIEMVDQ---GV--Q 224 (400)
Q Consensus 154 ~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~ 224 (400)
.||...=|..-.. -.+..++++|+.-|++..+....... .....++....+.+++++....+.+++.- .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555443333221 12445788888888888765322222 33445677788888888888888777532 11 2
Q ss_pred CCcccHHHHHHHHHhcCCchhHHHHHHHHHh----C-CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC------
Q 015811 225 PNVVSSNVIMNELCKNGKMDNASRLLDLMVQ----C-DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC------ 293 (400)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------ 293 (400)
-+..+.+.++...+...+.+-...+++.-.+ . +-+.--.|-..|...|...+++.+..++++++...--
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 2445666676665555555554444433221 1 1111222334566777777788887777777754210
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC-CCCcCHHHHHHHHHHH-----hccchHHHHHH
Q 015811 294 -----KHDDFSYNILINGYCKNKEVEEALSLYNELPFK-GIKPTVVTYNTLFHGL-----FEIRQAERALK 353 (400)
Q Consensus 294 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~ 353 (400)
..-...|..-++.|..+++-.+-..++++.... ...|.+.... .|+-| .+.|++++|..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 112345666777788877777777777776543 2234444333 33333 45667776653
No 357
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.55 E-value=19 Score=25.40 Aligned_cols=47 Identities=6% Similarity=0.046 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 280 RVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 280 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
+..+.++.+...++-|++......+++|.+-+|+..|.++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455556666677777777777788888888888888887776654
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.27 E-value=33 Score=27.98 Aligned_cols=158 Identities=12% Similarity=0.087 Sum_probs=81.7
Q ss_pred cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCChHhHHHHHHHHH
Q 015811 129 TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE-----NLNPNVVTYTSLIHGFC 203 (400)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~ 203 (400)
...+++|+.-|.+..+..++.+ ...-.....++....+.+++++.+..|.++... .-..+..+.++++....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKg---eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKG---EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccc---hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 3466777777777666543211 112233445667777778888877777776532 01123445566665554
Q ss_pred hcCCHHHHHHHHHHHH----HC-CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCC----C-------CcHHHHHH
Q 015811 204 HANDWNEAKGLLIEMV----DQ-GVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDV----R-------PNAFTYNT 267 (400)
Q Consensus 204 ~~~~~~~a~~~~~~~~----~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-------~~~~~~~~ 267 (400)
.+.+.+-....++.-+ .. +-..=-.|-..+...|...+++.+..+++..+.+.-- . .-...|..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 4444433333332211 11 0011112234455666666777776677666644210 1 11234555
Q ss_pred HHHHHHcCCChHHHHHHHHHHH
Q 015811 268 LMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
-++.|..+.+-.....++++..
T Consensus 197 EIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHH
Confidence 5667777766666666666654
No 359
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.12 E-value=40 Score=29.62 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=42.1
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHh--cCChhhHHHHHHHHHhc
Q 015811 18 LGCLAKNKHYDTVLSLFKRLNSIGLFPDLY--TYSILINCFCK--MGQVSLGFVIFGRILRS 75 (400)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 75 (400)
+..+...++|..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556889999999999999886 555554 45555555544 55788999999987765
No 360
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.94 E-value=12 Score=34.08 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=40.8
Q ss_pred cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 015811 59 MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNL 138 (400)
Q Consensus 59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 138 (400)
.|+...|...+.......+.........|.+...+.|....|-.++.+..... ...+-++..+.+++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555544433222222223334444444455555555555444433 23334444555555555555555555
Q ss_pred HHHHHcCC
Q 015811 139 FKEMTNGN 146 (400)
Q Consensus 139 ~~~~~~~~ 146 (400)
|++..+..
T Consensus 699 ~~~a~~~~ 706 (886)
T KOG4507|consen 699 FRQALKLT 706 (886)
T ss_pred HHHHHhcC
Confidence 55554443
No 361
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.38 E-value=5.9 Score=23.86 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 331 TVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
|....-.+|.++...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444445666666666666666666554
No 362
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.53 E-value=25 Score=25.66 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=67.7
Q ss_pred HHhCCCCCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhccC-----CccHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 015811 37 LNSIGLFPDL--YTYSILINCFCKMGQVSLGFVIFGRILRSCF-----APNVVTFTSLIKGLCAESR-IVEAAALFTKLK 108 (400)
Q Consensus 37 ~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 108 (400)
|.+.+..++. ...+.++......+++.....+++.+..... ..+...|..++.+.+.... ---+..+|.-+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3434444443 3457777777777888888888777743211 2356678999999877766 445678888888
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCh
Q 015811 109 AFGCEPNVITYNTLINGLCRTGHT 132 (400)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~~~~~~ 132 (400)
+.+.+.++.-|..++.++.+....
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCCC
Confidence 888899999999999988776433
No 363
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.88 E-value=50 Score=28.81 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcc--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSC--FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKA 109 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 109 (400)
.+.-+...|...|+++.|++.|.+....- .+-....|-.+|..-...|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45556666677777777777776644321 112344455556666666666666655555543
No 364
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.77 E-value=70 Score=30.37 Aligned_cols=198 Identities=15% Similarity=0.133 Sum_probs=109.1
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHH-hccCCcc--HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCChh--
Q 015811 44 PDLYTYSILINCFCKMGQVSLGFVIFGRIL-RSCFAPN--VVTFTSLIKGLC-AESRIVEAAALFTKLKAFGCEPNVI-- 117 (400)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 117 (400)
.+...|..+|.. |++.++-+. +..++|. ..++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 455667777654 566666666 3334443 334445566555 6678999999998776543222221
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHH-HHHHHhcCChHHHHHHHHHHHHcC---CCC
Q 015811 118 ---TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSII-IDGLCKEGFVDKAKELFLQMKYEN---LNP 190 (400)
Q Consensus 118 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~ 190 (400)
+-..++..+.+.+... |...+++..+.....+ ..+-...|..+ +..+...+++..|.+.++.+...- ..|
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 1224556666666555 8888887665432100 11222333333 333333478888998888876542 233
Q ss_pred ChHhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCC---------CCCcccHHHHHHHH--HhcCCchhHHHHHHHH
Q 015811 191 NVVTYTSLIHGFC--HANDWNEAKGLLIEMVDQGV---------QPNVVSSNVIMNEL--CKNGKMDNASRLLDLM 253 (400)
Q Consensus 191 ~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 253 (400)
...++..++.+.. +.+..+++.+.++.+..... .|...++..++..+ ...|+++.+...++.+
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555544 34556777777776643211 22344555555543 4567766666655544
No 365
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.25 E-value=4.9 Score=19.11 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=13.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLN 38 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 38 (400)
+|..+...+...++++.|...|+...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 366
>PRK10941 hypothetical protein; Provisional
Probab=75.03 E-value=46 Score=27.48 Aligned_cols=63 Identities=14% Similarity=0.014 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 83 TFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
..+.+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..-++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 34556677889999999999999999875 5566667777778899999999999888887765
No 367
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.40 E-value=49 Score=27.46 Aligned_cols=135 Identities=10% Similarity=0.063 Sum_probs=88.6
Q ss_pred chhHHHHHHHHHh-CCCCCcHHHHHHHHHHHHc-CC-ChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015811 243 MDNASRLLDLMVQ-CDVRPNAFTYNTLMDGFCL-TG-KINRVKELFVSMES-MGCKHDDFSYNILINGYCKNKEVEEALS 318 (400)
Q Consensus 243 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 318 (400)
+.+|.++|+...- ..+--|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..++..++|.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666653221 2244566677777766654 22 22222333333332 2346788888899999999999999999
Q ss_pred HHhhhhhC-CCCcCHHHHHHHHHHHhccchHHHHHHHHHHH-----hhCCCCCChhhHHHHHHHh
Q 015811 319 LYNELPFK-GIKPTVVTYNTLFHGLFEIRQAERALKLFVEM-----QGNDVAADTCTYRTFIDGL 377 (400)
Q Consensus 319 ~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 377 (400)
+|+..... +..-|...|..+|......|+..-..++..+- .+.++..+...-..+-+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99987755 45568889999999999999988777777652 2556666665555444443
No 368
>PRK10941 hypothetical protein; Provisional
Probab=74.05 E-value=49 Score=27.33 Aligned_cols=77 Identities=9% Similarity=-0.057 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHH
Q 015811 49 YSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFG-CEPNVITYNTLINGL 126 (400)
Q Consensus 49 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 126 (400)
.+.+-.+|.+.++++.|+.+.+.+.... +.+..-+..-.-.|.+.|.+..|..=++...+.- -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3455567788888888888888888864 3355556666777888888888888888777652 123444444444444
No 369
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.46 E-value=63 Score=28.28 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=46.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
.+.-+...|...|+++.|++.|.+.+..- .+.....|..+|..-...|+|........+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 56677888999999999999999965431 1223456777777778888888887777776654
No 370
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.39 E-value=89 Score=29.99 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=63.2
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 18 LGCLAKNKHYDTVLSLFKRLNSIGLFP---DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
|+-+.+.+.+++|+.+.+... |..| -...+...+..+...|+++.|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 566778889999998876643 3344 3456788888889999999998888887754 455555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR 128 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (400)
++......++ .......+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 5544322221 111111244556655555554
No 371
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.94 E-value=27 Score=23.84 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=35.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015811 26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFT 105 (400)
Q Consensus 26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 105 (400)
..++|..+.+.+...+. ....+--.-+..+...|+++.| +..- .....||...|.+|-.. +.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~-~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLP-QCHCYPDLEPWAALCAW--KLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHH-TTS--GGGHHHHHHHHH--HCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhc-ccCCCccHHHHHHHHHH--hhccHHHHHHHHH
Confidence 45666666666665442 1222222233345566666666 1111 12224555555544333 5666666666666
Q ss_pred HHHHcC
Q 015811 106 KLKAFG 111 (400)
Q Consensus 106 ~~~~~~ 111 (400)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555444
No 372
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.25 E-value=16 Score=21.18 Aligned_cols=22 Identities=27% Similarity=0.076 Sum_probs=10.7
Q ss_pred HHHHhcCCHHHHHHHHhhhhhC
Q 015811 305 NGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 305 ~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
-++.+.|++++|.+..+.+.+.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhh
Confidence 3445555555555555555543
No 373
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.99 E-value=42 Score=25.65 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=12.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKA 109 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~ 109 (400)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345556666666666665554
No 374
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.87 E-value=1.7e+02 Score=32.50 Aligned_cols=152 Identities=7% Similarity=-0.010 Sum_probs=94.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhccC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015811 51 ILINCFCKMGQVSLGFVIFGRILRSCF--APNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR 128 (400)
Q Consensus 51 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (400)
.+..+-.+.+.+.+|...++.-..... ......+..+...|...++++...-+...-. .+...+ ..+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHHHh
Confidence 444556678888999988888311100 1123344455558999999998887776421 122223 34445667
Q ss_pred cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH-HHHHHHhcCC
Q 015811 129 TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTS-LIHGFCHAND 207 (400)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 207 (400)
.|++..|...|+.+.+.+ ++...+++.++......+.++.+.-..+-.... ..+....+++ =+.+--+.++
T Consensus 1462 ~g~~~da~~Cye~~~q~~-------p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-------PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-------CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcc
Confidence 899999999999999876 455777888887777778887777655554432 2222222322 2333355666
Q ss_pred HHHHHHHHH
Q 015811 208 WNEAKGLLI 216 (400)
Q Consensus 208 ~~~a~~~~~ 216 (400)
|+.....+.
T Consensus 1534 wD~~e~~l~ 1542 (2382)
T KOG0890|consen 1534 WDLLESYLS 1542 (2382)
T ss_pred hhhhhhhhh
Confidence 666655543
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.15 E-value=31 Score=23.74 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=22.2
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 334 TYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367788888888888888888888776
No 376
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.99 E-value=25 Score=32.93 Aligned_cols=62 Identities=10% Similarity=-0.039 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMT 143 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 143 (400)
+...-..++..|.+.|-.+.|.++.+.+-..- ....-|..-+..+.+.|+...+-.+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344445555555555555555544433221 112233444444455555544444444433
No 377
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.86 E-value=12 Score=22.55 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=11.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 015811 121 TLINGLCRTGHTIVALNLFKEMT 143 (400)
Q Consensus 121 ~l~~~~~~~~~~~~a~~~~~~~~ 143 (400)
.++.++...|++++|.++++.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555555543
No 378
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.51 E-value=69 Score=27.54 Aligned_cols=193 Identities=11% Similarity=0.039 Sum_probs=100.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC----CccHHHHHHHHHHHH
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF----APNVVTFTSLIKGLC 92 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 92 (400)
...+.-+.|+++...+........ .++...+..+... ..++.+++...++.....-. ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 456777889998855555544422 2344444444433 78888888888877665311 011222222222222
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-----cCChHHHHHHH---HHHHc--CCCcccccccCChhhHHH
Q 015811 93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR-----TGHTIVALNLF---KEMTN--GNGEIGVVFKPNTVTYSI 162 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~---~~~~~--~~~~~~~~~~~~~~~~~~ 162 (400)
....+.+..++.+-.... ..+......++..+.. ..+++.-..++ ..+.. .. ......+|..
T Consensus 80 ~lq~L~Elee~~~~~~~~--~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~------~~~~~~~~l~ 151 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNL--SQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILL------PEELAETWLK 151 (352)
T ss_pred HHhHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccc------hhHHHHHHHH
Confidence 223333333322222111 0001111122221111 11111111111 11111 00 2345578889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC---ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 163 IIDGLCKEGFVDKAKELFLQMKYENLNP---NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
+++.+.+.|.++.|...+..+...+... .......-+...-..|+..+|...++.....
T Consensus 152 ~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 152 FAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988753211 3344445566677889999999999888873
No 379
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.35 E-value=40 Score=24.67 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhC------CCCcCHHHHHHHHHHHhccch-HHHHHHHHHHHhhCCCCCChhhHHH
Q 015811 300 YNILINGYCKNKEVEEALSLYNELPFK------GIKPTVVTYNTLFHGLFEIRQ-AERALKLFVEMQGNDVAADTCTYRT 372 (400)
Q Consensus 300 ~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (400)
.+.++......+++.....+++.+... | ..+...|..++.+.....- --.+..+|.-|.+.+.+++...|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~-~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIG-WLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhh-hcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 455555556666666666666655321 1 2255678888888866555 4456777888887778888888888
Q ss_pred HHHHhhcC
Q 015811 373 FIDGLCVR 380 (400)
Q Consensus 373 l~~~~~~~ 380 (400)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88876655
No 380
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.31 E-value=82 Score=28.30 Aligned_cols=126 Identities=12% Similarity=0.039 Sum_probs=82.2
Q ss_pred HHHHHHccCChhHHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811 17 LLGCLAKNKHYDTVLS-LFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES 95 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (400)
-|.--...|+...|-+ ++.-+......|+....... .....|+++.+.+.+...... +.....+...+++.....|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 3444556777766644 44444443334444443333 456789999999888776553 2335567788899999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 96 RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
+++.|..+-+.|....++ ++..........-..|-++++.-.++++...+
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999888876544 33333333333344577888888888887665
No 381
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.95 E-value=1e+02 Score=29.29 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=40.9
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh---
Q 015811 234 MNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG-CKHDDFSYNILINGYCK--- 309 (400)
Q Consensus 234 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 309 (400)
...+.-.|+++.|.+.+... .....+..++...+..|.-.+-.+... ..+.... -.|....+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 34556688889988888762 223455555555544332221111111 2222111 01222567788888875
Q ss_pred cCCHHHHHHHHhhhhhC
Q 015811 310 NKEVEEALSLYNELPFK 326 (400)
Q Consensus 310 ~~~~~~A~~~~~~~~~~ 326 (400)
..+..+|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 46788899888877654
No 382
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.79 E-value=18 Score=20.42 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=19.2
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 015811 22 AKNKHYDTVLSLFKRLNSIGLFPDLYTYSILIN 54 (400)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 54 (400)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666555555555543
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.71 E-value=28 Score=22.71 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=28.7
Q ss_pred HHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhh
Q 015811 318 SLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFT 386 (400)
Q Consensus 318 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 386 (400)
++++.+.+.|+- +......+-.+--..|+.+.|.+++..+. .|. .-|..++.++...|.-+-|
T Consensus 23 ~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 344444444432 33333333222234455566666666555 332 1455555555555544433
No 384
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.29 E-value=16 Score=20.57 Aligned_cols=32 Identities=6% Similarity=-0.011 Sum_probs=17.2
Q ss_pred ccchHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015811 344 EIRQAERALKLFVEMQGNDVAADTCTYRTFID 375 (400)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (400)
+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34444555555556655555555555554443
No 385
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.08 E-value=20 Score=20.78 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015811 337 TLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFID 375 (400)
Q Consensus 337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (400)
.+.-++.+.|++++|.+..+.+++ +.|+..-...|-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 355678999999999999999998 5777766555544
No 386
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.72 E-value=8.4 Score=27.43 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811 94 ESRIVEAAALFTKLKAFGCEPNVITYNTLING 125 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (400)
.|.-..|..+|++|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34455566777777777755553 4555443
No 387
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=66.27 E-value=35 Score=22.50 Aligned_cols=56 Identities=11% Similarity=-0.068 Sum_probs=34.2
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc-cHHHHHHHHHHHHhcCCHH
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP-NVVTFTSLIKGLCAESRIV 98 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 98 (400)
+.|...-..+...+...|+++.|++.+-.+++..... +...-..++..+.-.|.-+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4466777777777888888888888877777754322 3445566666666666533
No 388
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.59 E-value=1.5e+02 Score=29.45 Aligned_cols=120 Identities=14% Similarity=0.048 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCCh--HHHHHHHHHHHcCCCcccccccCC--
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKLKAFG---CEPNVITYNTLINGLCRTGHT--IVALNLFKEMTNGNGEIGVVFKPN-- 156 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 156 (400)
|..|+..|...|+.++|+++|.+..... -..-...+..++.-+...+.. +-.+++-+...+..++.+..+-.+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5566666666677777777766665421 000011122233333333333 444444444444433222111111
Q ss_pred h---hhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 015811 157 T---VTY-SIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFC 203 (400)
Q Consensus 157 ~---~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (400)
. .+. ..-+-.|......+-+..+++.+....-.++....+.++..|+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 0 000 0112223444555556666666655444444555555555444
No 389
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=65.42 E-value=35 Score=22.19 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=23.3
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015811 32 SLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRIL 73 (400)
Q Consensus 32 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 73 (400)
++|+-....|+..|...|..++..+.-.=-.+...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556655556666666666666655444444444455555444
No 390
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.17 E-value=82 Score=26.41 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=9.6
Q ss_pred cHHHHHHHHHhcCCchh
Q 015811 229 SSNVIMNELCKNGKMDN 245 (400)
Q Consensus 229 ~~~~l~~~~~~~~~~~~ 245 (400)
.|..|+.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 35556666666665543
No 391
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.15 E-value=21 Score=31.67 Aligned_cols=103 Identities=14% Similarity=0.006 Sum_probs=52.7
Q ss_pred HHHHhcCCchhHHHHHHHHHhCCCCCcHHHH-HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 015811 235 NELCKNGKMDNASRLLDLMVQCDVRPNAFTY-NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEV 313 (400)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (400)
..+...+.++.|..++.++++. .|+...| ..=..++.+.+++..|..=...+++.. +-....|-.-..++.+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHH
Confidence 3445556666677777666664 3433333 222355666666666666666665543 21222333333344444555
Q ss_pred HHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811 314 EEALSLYNELPFKGIKPTVVTYNTLFHGL 342 (400)
Q Consensus 314 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 342 (400)
.+|...|+..... .|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 5555555554433 55555555444433
No 392
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.15 E-value=5.8 Score=33.27 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHc
Q 015811 94 ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTN 144 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 144 (400)
.|.++.|++.|...+... ++....|..-.+++.+.+++..|++-+.....
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc
Confidence 344444444444444332 22333333333444444444444444444443
No 393
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=64.93 E-value=82 Score=26.30 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=85.9
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHh----c
Q 015811 23 KNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK----MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCA----E 94 (400)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 94 (400)
..+++..+...+......+ +......+...+.. ..+...|.++|+...+.|.. .....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 4567777888887776644 22344444444433 34577888888877776532 333335555544 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG-------HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL 167 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (400)
.+..+|...|++..+.|..+...+...+...|.... +...|...+.+....+ +......+...|
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---------~~~a~~~lg~~y 197 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---------NPDAQLLLGRMY 197 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---------CHHHHHHHHHHH
Confidence 478889999999888874433222333444443321 2235666666666543 333444444444
Q ss_pred Hh----cCChHHHHHHHHHHHHcCC
Q 015811 168 CK----EGFVDKAKELFLQMKYENL 188 (400)
Q Consensus 168 ~~----~~~~~~a~~~~~~~~~~~~ 188 (400)
.. ..+..+|..+|....+.|.
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 32 3466777777777766653
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.81 E-value=46 Score=25.75 Aligned_cols=32 Identities=16% Similarity=0.015 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811 294 KHDDFSYNILINGYCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 294 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 325 (400)
.|++..|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555555555555555555555555555443
No 395
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.58 E-value=7.3 Score=27.71 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 015811 346 RQAERALKLFVEMQGNDVAADTCTYRTFIDG 376 (400)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (400)
|.-.+|-.+|++|++.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 445566677777777776666 35665554
No 396
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.57 E-value=1.2e+02 Score=28.15 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=66.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHH
Q 015811 204 HANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKE 283 (400)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 283 (400)
-.|+...|...+.........-.......+.+...+.|..-.|..++....... ...+-++-.+..++....+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 357777787777766654333344455566677777777777877777666554 3445566677788888888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHH
Q 015811 284 LFVSMESMGCKHDDFSYNILIN 305 (400)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~ 305 (400)
.|+...+.. +.+...-+.|..
T Consensus 698 ~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 698 AFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHhcC-CCChhhHHHHHH
Confidence 888887765 345555554443
No 397
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=64.31 E-value=1.6e+02 Score=30.25 Aligned_cols=163 Identities=11% Similarity=0.013 Sum_probs=97.0
Q ss_pred HHHHHccCChhHHHH------HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHH-------HhccCCccHHHH
Q 015811 18 LGCLAKNKHYDTVLS------LFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRI-------LRSCFAPNVVTF 84 (400)
Q Consensus 18 ~~~~~~~~~~~~a~~------~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~ 84 (400)
.......|.+.++.+ +++.....-.++....|..+...+-+.|+.++|...-... ...+..-+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 344556777777777 5553222222455678888888899999999888764433 222222244456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccc-cccCC
Q 015811 85 TSLIKGLCAESRIVEAAALFTKLKAF-----G--CEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGV-VFKPN 156 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 156 (400)
..+.......+....|...+.+.... | .+|...+++.+-..+...++.+.|+++++.+......... ..-.+
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 66655555666777777776665532 1 2344445555555555668889999988887764422111 11234
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHH
Q 015811 157 TVTYSIIIDGLCKEGFVDKAKELF 180 (400)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~a~~~~ 180 (400)
..++..+.+.+...+++..|....
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHH
Confidence 556666666666666666655443
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.27 E-value=48 Score=25.65 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=23.0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 113 EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 113 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
.|++.+|..++..+...|+.++|.+...++....
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5666666666767777777777777666666653
No 399
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.83 E-value=56 Score=23.97 Aligned_cols=29 Identities=0% Similarity=-0.063 Sum_probs=13.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhccCCcc
Q 015811 52 LINCFCKMGQVSLGFVIFGRILRSCFAPN 80 (400)
Q Consensus 52 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 80 (400)
++..+.+.++.-.|.++|+.+.+.++..+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 34444444444555555555555443333
No 400
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=63.77 E-value=19 Score=22.01 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015811 79 PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR 128 (400)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (400)
|....++.++..+++..-.++++..+.+..+.| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555 2344444444444433
No 401
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.63 E-value=5.6 Score=33.35 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=40.3
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811 23 KNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA 102 (400)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
..|.++.|++.|-...... ++....|..-..++.+.++...|+.=+...+..+.. +..-|-.--.+..-.|++.+|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 3455555555555554443 334444444445555555555555555554443211 11122222222333455555555
Q ss_pred HHHHHHHcCC
Q 015811 103 LFTKLKAFGC 112 (400)
Q Consensus 103 ~~~~~~~~~~ 112 (400)
.|+...+.++
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 5555555443
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.42 E-value=56 Score=25.01 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhcCCCCCH--HH-----HHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccc
Q 015811 278 INRVKELFVSMESMGCKHDD--FS-----YNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIR 346 (400)
Q Consensus 278 ~~~a~~~~~~~~~~~~~~~~--~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 346 (400)
++.|..+|+.+.+.-..|.. .. -...+-.|.+.|.+++|.+++++... .|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 67888888888765322211 11 12344568888999999999888876 345555555555544443
No 403
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.19 E-value=16 Score=30.33 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=20.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhH
Q 015811 335 YNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTY 370 (400)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 370 (400)
|+..|....+.||.++|++++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 445556666666666666666666666555444443
No 404
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.19 E-value=89 Score=26.10 Aligned_cols=189 Identities=11% Similarity=0.010 Sum_probs=105.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cC
Q 015811 170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK----NG 241 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 241 (400)
.+++..+...+......+. ......+...|.. ..+...|..++...-+.|.. .....+...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCccc
Confidence 4556666666666554321 1233333333332 23567788888766665532 233334444444 33
Q ss_pred CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCC-------ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----c
Q 015811 242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTG-------KINRVKELFVSMESMGCKHDDFSYNILINGYCK----N 310 (400)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 310 (400)
+..+|..++....+.|..+.......+...|.... +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 77888888888888774332222334444443321 2336888888887765 44444455555533 4
Q ss_pred CCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccc---------------hHHHHHHHHHHHhhCCCCCChhhHH
Q 015811 311 KEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIR---------------QAERALKLFVEMQGNDVAADTCTYR 371 (400)
Q Consensus 311 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~ 371 (400)
.++++|..+|...-+.|. ......+- .+...| +...|...+......+.........
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 478888888888887764 22222222 333333 6777788888777776665555544
No 405
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=63.16 E-value=31 Score=21.08 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFC 57 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 57 (400)
...++.++...++..-.+.++..+.++...|. -+..+|..-++.++
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34455555555555555555555555555552 34444444444433
No 406
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=62.93 E-value=1.1e+02 Score=26.96 Aligned_cols=137 Identities=17% Similarity=0.110 Sum_probs=81.9
Q ss_pred CCCCCcchHHHHHHHHH--ccCChhHHHHHHHHHHhCCCCCCHHhHHH--------HHHHHHhcCChhhHHHHHHHHHhc
Q 015811 6 PSPPPVSSFNILLGCLA--KNKHYDTVLSLFKRLNSIGLFPDLYTYSI--------LINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--------l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
|.|+.+.+|-.++..+. .+.++.+|..+-+.....-.--|..++.. +-..+-..|+...-...+......
T Consensus 119 ~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrt 198 (493)
T KOG2581|consen 119 PLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRT 198 (493)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 44445667766665544 45889999888777643211223333333 333444566666655555554432
Q ss_pred -----cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHhcCChHHHHHHHHHHH
Q 015811 76 -----CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL-------INGLCRTGHTIVALNLFKEMT 143 (400)
Q Consensus 76 -----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~ 143 (400)
.........|.|++.|...+.++.|..+..+.. -|+...-+.. ....+-.+++..|.+.|-...
T Consensus 199 AtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~ 274 (493)
T KOG2581|consen 199 ATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQAL 274 (493)
T ss_pred hhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHH
Confidence 112234567888899999999999988877654 3444332222 223334678888998888877
Q ss_pred cCC
Q 015811 144 NGN 146 (400)
Q Consensus 144 ~~~ 146 (400)
...
T Consensus 275 rka 277 (493)
T KOG2581|consen 275 RKA 277 (493)
T ss_pred HhC
Confidence 654
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.92 E-value=21 Score=29.66 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 015811 82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITY 119 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 119 (400)
..|+..|....+.||+++|++++++..+.|..--..+|
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 34567888888888888888888888887755333333
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.08 E-value=35 Score=27.78 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHH----HcC-CCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015811 157 TVTYSIIIDGLCKEGFVDKAKELFLQMK----YEN-LNPNVVTYTSLIHGFCHANDWNEAKGLLIEM 218 (400)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 218 (400)
....-.+...|.+.|++++|.++|+.+. +.| ..+...+...+..++.+.|+.+....+.-++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444455666666666666666666542 233 2233445555666666666666666555444
No 409
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.74 E-value=1e+02 Score=26.35 Aligned_cols=117 Identities=7% Similarity=-0.032 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh---cCChHH
Q 015811 99 EAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK---EGFVDK 175 (400)
Q Consensus 99 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ 175 (400)
.-+.++++.++.+ +.+......++..+.+..+.++..+.++++.... +-+...|...+..... .-.++.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-------~~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-------PGSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHhccCcHHH
Confidence 3445555555542 3444455555566666556666666666665543 3345555555544433 223444
Q ss_pred HHHHHHHHHHc------CC----CCCh-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 015811 176 AKELFLQMKYE------NL----NPNV-------VTYTSLIHGFCHANDWNEAKGLLIEMVDQGV 223 (400)
Q Consensus 176 a~~~~~~~~~~------~~----~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 223 (400)
+..+|.+..+. +. .+.. ..+..+...+.++|..+.|..+++.+.+.++
T Consensus 121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44444443321 10 0011 1223333444567888888888888887654
No 410
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.06 E-value=49 Score=22.38 Aligned_cols=79 Identities=13% Similarity=0.015 Sum_probs=53.4
Q ss_pred ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 015811 61 QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFK 140 (400)
Q Consensus 61 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 140 (400)
..++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+. .||...|.+|.. .+.|-.+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 456777777766654311 22222333456778899999998887763 788888876654 36777777777777
Q ss_pred HHHcCC
Q 015811 141 EMTNGN 146 (400)
Q Consensus 141 ~~~~~~ 146 (400)
++...+
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 777766
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=60.65 E-value=83 Score=29.64 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=52.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChh------hHHHHHHHHHhccCCccHHHHHHH
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYSILINCFCKMGQVS------LGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
+|+.+|..+|++-.+.++++.+.... -+.=...+|..++...+.|.++ .|.+.+++.. +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999987542 2223457888888889998765 3444555444 23466677666
Q ss_pred HHHHHh
Q 015811 88 IKGLCA 93 (400)
Q Consensus 88 ~~~~~~ 93 (400)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 412
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.36 E-value=58 Score=23.89 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811 197 SLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG 241 (400)
Q Consensus 197 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (400)
.++..+.+.++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 444555555555556666666665554444444444444444444
No 413
>PRK13342 recombination factor protein RarA; Reviewed
Probab=60.00 E-value=1.3e+02 Score=26.91 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 015811 206 NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNEL 237 (400)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (400)
.+.+.|+.++..|.+.|..|....-..+..++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45666666666666655544433333333333
No 414
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.00 E-value=1.2e+02 Score=26.66 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=34.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHH--hcCCchhHHHHHHHHHhC
Q 015811 200 HGFCHANDWNEAKGLLIEMVDQGVQPNVV--SSNVIMNELC--KNGKMDNASRLLDLMVQC 256 (400)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 256 (400)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677888888888888776 444443 3333444443 355667777777776654
No 415
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.44 E-value=92 Score=25.07 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=16.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC
Q 015811 165 DGLCKEGFVDKAKELFLQMKYENL 188 (400)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~ 188 (400)
......+++.+|+++|++.....+
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556777888888887766543
No 416
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.29 E-value=75 Score=25.87 Aligned_cols=59 Identities=14% Similarity=-0.010 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKLKAF----G-CEPNVITYNTLINGLCRTGHTIVALNLFKEM 142 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 142 (400)
-..+...|...|++++|.++|+.+... | ..+...+...+..++...|+.+..+.+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345667777788888888877776422 2 1234455666777777778877776665444
No 417
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=59.25 E-value=31 Score=28.85 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=43.7
Q ss_pred CCCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHH-HHHHHHhcCChhhHHHHHHHHHhcc
Q 015811 5 HPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSI-LINCFCKMGQVSLGFVIFGRILRSC 76 (400)
Q Consensus 5 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~ 76 (400)
...|.|+..|...+....+.+.+.+.-.+|.+..+.. |.|+..|.. --.-+...++++.+..+|...++.+
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 3455667777777766666677777777777766654 445555543 2223445566777777777666654
No 418
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.66 E-value=96 Score=24.99 Aligned_cols=26 Identities=4% Similarity=0.135 Sum_probs=16.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC
Q 015811 198 LIHGFCHANDWNEAKGLLIEMVDQGV 223 (400)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~~~ 223 (400)
+...-...+++.+|+++|+++....+
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444556777778888777766543
No 419
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=58.29 E-value=1.5e+02 Score=27.02 Aligned_cols=91 Identities=8% Similarity=-0.017 Sum_probs=61.3
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH--hccchHHHHHHHHHHHh-hCCCCCChhh
Q 015811 294 KHDDFSY-NILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL--FEIRQAERALKLFVEMQ-GNDVAADTCT 369 (400)
Q Consensus 294 ~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~-~~~~~~~~~~ 369 (400)
.|+..++ +.++..+.+.|.+.+|..++..+... .+|+...|..+|..- ...-+...+..+++.|. ..| -|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4444444 56777888888899999999888765 355677777776532 11223677788888876 455 56777
Q ss_pred HHHHHHHhhcCCcchhhH
Q 015811 370 YRTFIDGLCVRPQVRFTY 387 (400)
Q Consensus 370 ~~~l~~~~~~~g~~~~a~ 387 (400)
|...+.-=...|..+-+=
T Consensus 533 w~~y~~~e~~~g~~en~~ 550 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCG 550 (568)
T ss_pred HHHHHHhhccCCCccccc
Confidence 777777666777766553
No 420
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=56.05 E-value=26 Score=17.81 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhhCCCCcCHHHH
Q 015811 313 VEEALSLYNELPFKGIKPTVVTY 335 (400)
Q Consensus 313 ~~~A~~~~~~~~~~~~~p~~~~~ 335 (400)
++.|..+|++.+.. .|++.+|
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHH
Confidence 44555555554443 3444444
No 421
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.04 E-value=1.3e+02 Score=25.55 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=71.6
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh----CCCCCcH
Q 015811 188 LNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ-GVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ----CDVRPNA 262 (400)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 262 (400)
+..|...++.|..+ +....++-.+..++..+. |-.--...+......|++.|+.+.|.+.+....+ .|.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455555554432 222344444445555443 2112234556667789999999999988866544 4556665
Q ss_pred HHHHHHHH-HHHcCCChHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811 263 FTYNTLMD-GFCLTGKINRVKELFVSMESMGCKHDDF----SYNILINGYCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 263 ~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~ 325 (400)
..+..-+. .|....-..+-.+..+.+.+.|...+.. +|..+ .+....++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 54433222 2222222344444455555555544433 34333 23455688888888776553
No 422
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.93 E-value=42 Score=29.91 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=72.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL-YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
.-+..+.+.+.++.|+.++.++.+.. ||. ..|..-..++.+.+++..|+.=+...++..+. -...|..-..++.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMAL 85 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhH
Confidence 34556677889999999999998864 544 44444457888899999998888888776422 233344344555666
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGL 126 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (400)
+.+.+|...|+..... .|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 7777888888777665 67766665555544
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.90 E-value=60 Score=21.50 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=27.1
Q ss_pred HHccCChhHHHHHHHHHHh----CCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811 21 LAKNKHYDTVLSLFKRLNS----IGLFPD----LYTYSILINCFCKMGQVSLGFVIFGRILR 74 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~----~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 74 (400)
..+.|++.+|.+.+.+... .+.... ......+.......|+.++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467777777665555432 221110 11222233444556666666666666554
No 424
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.78 E-value=2.6e+02 Score=28.75 Aligned_cols=152 Identities=15% Similarity=0.195 Sum_probs=90.5
Q ss_pred HHhcCChHHHHHHHHHHHcCCCcc-------------------c-ccccCC--hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811 126 LCRTGHTIVALNLFKEMTNGNGEI-------------------G-VVFKPN--TVTYSIIIDGLCKEGFVDKAKELFLQM 183 (400)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~~~~-------------------~-~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (400)
|...|+..+|+..|.+.....++. + ...++. .+-|...++.+-+.+-.+.+.++-..+
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 556778888888887765543321 0 001122 344677888888889999998888777
Q ss_pred HHcCCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCchh----------
Q 015811 184 KYENLNPN----VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV----VSSNVIMNELCKNGKMDN---------- 245 (400)
Q Consensus 184 ~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~---------- 245 (400)
++. ++++ ..+++.+.+.+...|.+-+|...+-. .||. .....++..++.+|.++.
T Consensus 1010 Ie~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1010 IEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Confidence 764 2222 24567778888888888888766532 2333 345666677777776553
Q ss_pred --HHH-HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHH
Q 015811 246 --ASR-LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKEL 284 (400)
Q Consensus 246 --a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 284 (400)
... +++..-+.........|+.|-..+...+++.+|-.+
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 233 223222222222233455555556677777766543
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.36 E-value=25 Score=16.95 Aligned_cols=27 Identities=4% Similarity=-0.050 Sum_probs=13.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 015811 26 HYDTVLSLFKRLNSIGLFPDLYTYSILI 53 (400)
Q Consensus 26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 53 (400)
+.+.|..+|+++.... +-+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 4555666666655432 23444444444
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.07 E-value=62 Score=21.42 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=29.6
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 167 LCKEGFVDKAKELFLQMKYE----NLNPN----VVTYTSLIHGFCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (400)
..+.|++..|.+.+....+. +.... ......+...+...|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677888876655554432 22110 12222344455566777777777777654
No 427
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.04 E-value=1.3e+02 Score=24.80 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=18.0
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHH
Q 015811 154 KPNTVTYSIIIDGLCKEGFVDKAKELFL 181 (400)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 181 (400)
.-++.....+...+.+.+++.+|...|-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3456677777788888888877776553
No 428
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.92 E-value=63 Score=21.16 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=8.5
Q ss_pred hcCChHHHHHHHHHHH
Q 015811 128 RTGHTIVALNLFKEMT 143 (400)
Q Consensus 128 ~~~~~~~a~~~~~~~~ 143 (400)
..|+.+.|.+++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3455555555555554
No 429
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=52.75 E-value=1.2e+02 Score=24.44 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=54.2
Q ss_pred HHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh-cC-----------CCCCHHHHHHHH
Q 015811 237 LCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMES-MG-----------CKHDDFSYNILI 304 (400)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-----------~~~~~~~~~~l~ 304 (400)
|.+..+..-..++.+-....+++-+..-+.+++ +...||..+|...++.-.. .| -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444444444555444455555555555554 4567888887777765432 11 145666666666
Q ss_pred HHHHhcCCHHHHHHHHhhhhhCCCCcC
Q 015811 305 NGYCKNKEVEEALSLYNELPFKGIKPT 331 (400)
Q Consensus 305 ~~~~~~~~~~~A~~~~~~~~~~~~~p~ 331 (400)
..|. .+++++|.+++.++-+.|+.|.
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 5554 3567888888888777777654
No 430
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.49 E-value=1.2e+02 Score=24.47 Aligned_cols=118 Identities=14% Similarity=0.006 Sum_probs=69.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHH-HHHHHHHHHHcCCChH
Q 015811 202 FCHANDWNEAKGLLIEMVDQGVQPNV-VSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAF-TYNTLMDGFCLTGKIN 279 (400)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 279 (400)
|.....++.|...+.+.+.. .|+. .-|+.-+.++.+..+++.+..=-...++. .|+.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44455677888877666654 4555 34455566777777887777666665553 34433 3334555666777788
Q ss_pred HHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811 280 RVKELFVSMES----MGCKHDDFSYNILINGYCKNKEVEEALSLYNEL 323 (400)
Q Consensus 280 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 323 (400)
.|...+.+... ..+++-......|..+=-..=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88888877633 333444445555555544444455555555544
No 431
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=51.68 E-value=56 Score=22.60 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=25.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ 61 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 61 (400)
++..+...+..-.|.++++.+.+.+...+..|-...+..+.+.|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 444455555555666666666665544555555555555555554
No 432
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.30 E-value=92 Score=22.57 Aligned_cols=68 Identities=13% Similarity=0.024 Sum_probs=43.4
Q ss_pred CCCHHhHHHHHHHHHhcCC---hhhHHHHHHHHHh-ccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 43 FPDLYTYSILINCFCKMGQ---VSLGFVIFGRILR-SCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
.++..+-..+..++.++.+ ..+.+.+++.+.+ ...........-|.-++.+.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4566666666667766654 4456677777776 222223334444566777888888888888887765
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.36 E-value=1.6e+02 Score=24.94 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=19.8
Q ss_pred HHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 67 VIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
++|+.+...++.|.-..+..+.-.+...=.+..++.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444444444444444444444444444555555444
No 434
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=50.13 E-value=48 Score=23.19 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 015811 16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG 60 (400)
Q Consensus 16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 60 (400)
.++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 345555555556666666666666555555555555555555554
No 435
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=50.10 E-value=3e+02 Score=28.53 Aligned_cols=161 Identities=14% Similarity=0.011 Sum_probs=89.7
Q ss_pred HHHHhcCChhhHHH------HHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HcCCCCChhhHH
Q 015811 54 NCFCKMGQVSLGFV------IFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK-------AFGCEPNVITYN 120 (400)
Q Consensus 54 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~ 120 (400)
+.....|.+..+.+ ++......-.++....|..+...+.+.++.++|...=.... ...-+-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33444555665555 55533332224466778888889999999999887654432 112122334455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCc-ccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----C---CCCh
Q 015811 121 TLINGLCRTGHTIVALNLFKEMTNGNGE-IGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN----L---NPNV 192 (400)
Q Consensus 121 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~ 192 (400)
.+.......++...|+..+.+......- .+...||...+++.+-..+...++++.|.++.+.+.... . -...
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 5555555556777777766665443211 111135555566666656666688888888888776531 1 1233
Q ss_pred HhHHHHHHHHHhcCCHHHHHHH
Q 015811 193 VTYTSLIHGFCHANDWNEAKGL 214 (400)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~ 214 (400)
.++..+.+.+...+++..|...
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHH
Confidence 4455555555555555544433
No 436
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=49.05 E-value=86 Score=21.67 Aligned_cols=24 Identities=4% Similarity=0.065 Sum_probs=14.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcc
Q 015811 53 INCFCKMGQVSLGFVIFGRILRSC 76 (400)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~~~~~~ 76 (400)
+..+.++...++|+++++.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344455566666777766666665
No 437
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=48.67 E-value=1.9e+02 Score=25.56 Aligned_cols=53 Identities=13% Similarity=-0.021 Sum_probs=33.3
Q ss_pred cCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015811 154 KPNTVTYSIIIDGLCK---EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAN 206 (400)
Q Consensus 154 ~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (400)
..+...+..+++++.+ -.+.+.|+-++..|++.|-.|-...-..++-++-.-|
T Consensus 243 Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 243 DKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 4455566667777654 3678888888888888876655544444444444333
No 438
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=48.15 E-value=2.8e+02 Score=27.19 Aligned_cols=133 Identities=11% Similarity=0.024 Sum_probs=78.0
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH---HhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCF---CKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
-+...+..||..+.+.|++++...--..|.+.- +.+...|..-+... ...++...+..+|++.+..-. ++..|.
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~ 187 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWE 187 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHH
Confidence 455677889999999999988877777776653 44666666655543 334677778888887776533 333333
Q ss_pred HHHHHH-------HhcCCHHHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHc
Q 015811 86 SLIKGL-------CAESRIVEAAALFTKLKAF-GCEPN-----VITYNTLINGLCRTGHTIVALNLFKEMTN 144 (400)
Q Consensus 86 ~l~~~~-------~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 144 (400)
-.+..+ ...++++....+|++.+.. |...+ ...|.-+-..|..+-..++...++..-..
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~ 259 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK 259 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 333322 2345677777888877643 32222 12222222334444444556666665544
No 439
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=48.03 E-value=1.8e+02 Score=25.04 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhccCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811 63 SLGFVIFGRILRSCFAPN----VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC 127 (400)
Q Consensus 63 ~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (400)
++...++..+++. -|+ ...|..+++.....|.++.++.+|++.+..|..|-...-..++..+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455555555554 233 34567777777778888888888888888877776666666666654
No 440
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.11 E-value=1.5e+02 Score=23.98 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=6.9
Q ss_pred HhcCChHHHHHHHHHH
Q 015811 168 CKEGFVDKAKELFLQM 183 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~ 183 (400)
.....++.|+..+.+.
T Consensus 89 l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRA 104 (284)
T ss_pred HhhccccHHHHHHHHH
Confidence 3344444444444443
No 441
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=46.60 E-value=1.4e+02 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
..+.+++.|...|+++.|.+.|.-+++.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4566677777777777777777777765
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.46 E-value=1.3e+02 Score=26.65 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh----------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 015811 155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVT----------------YTSLIHGFCHANDWNEAKGLLIEM 218 (400)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~ 218 (400)
|+......+++.+...-+-.+..+.++... .|..|+..+ ...|++.++-.|++..|+++++.+
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~-~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEK-RGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhh-ccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Q ss_pred HHCC-------CCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 219 VDQG-------VQPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 219 ~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
.-.. ......++..+.-+|.-.+++..|.++|..+.
T Consensus 149 dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 149 DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 443
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.03 E-value=96 Score=21.26 Aligned_cols=60 Identities=8% Similarity=0.031 Sum_probs=30.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--ChhhHHHHHHHHHhcc
Q 015811 15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG--QVSLGFVIFGRILRSC 76 (400)
Q Consensus 15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~ 76 (400)
..++.-|...|+.++|...+.++... .-.......++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 45666777889999998888775321 112233334444444332 1223344555555444
No 444
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.03 E-value=1.1e+02 Score=22.13 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=11.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 303 LINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 303 l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
|.-++.+.++++++.++.+.+.+.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333444555555555555554443
No 445
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.50 E-value=1.1e+02 Score=21.78 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 175 KAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIE 217 (400)
Q Consensus 175 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (400)
.+.++|..|...|+-. -...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666655432 234455566666666777777766654
No 446
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.26 E-value=82 Score=21.75 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH 131 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 131 (400)
+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333444444444444433344444444444444443
No 447
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.12 E-value=88 Score=20.61 Aligned_cols=54 Identities=15% Similarity=0.025 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChH
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEP-NVITYNTLINGLCRTGHTI 133 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 133 (400)
|...-..+...+...|++++|++.+-.+.+..... +...-..++..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 55666667777777777777777777776553222 3344455666665555543
No 448
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.93 E-value=2.5e+02 Score=25.67 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=65.8
Q ss_pred HHHcCCChHHHHHHHHHHH---hcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHhhhhh-------CCCCcCH---
Q 015811 271 GFCLTGKINRVKELFVSME---SMGCKHD-----DFSYNILINGYCKNKEVEEALSLYNELPF-------KGIKPTV--- 332 (400)
Q Consensus 271 ~~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~p~~--- 332 (400)
.+.-.|++.+|.+++...- ..|...+ -..||.+...+.+.|.+..+..+|.+..+ .|+.|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3456788888888776542 1221112 22346666666777777777777776653 3544432
Q ss_pred --------HHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 015811 333 --------VTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV 379 (400)
Q Consensus 333 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (400)
.+||. .-.|...|++-.|.+.|.+.... +.-++..|-.+..+|.-
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 22332 23467788888888888877643 45577788888887764
No 449
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.92 E-value=2.4e+02 Score=26.83 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=51.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCcccHHHH
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYE--NLNPNVVTYTSLIHGFCHANDWN------EAKGLLIEMVDQGVQPNVVSSNVI 233 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 233 (400)
+++.+|...|++..+.++++..... |.+.-...++..++...+.|.++ .+.+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7899999999999999999988764 22223466888888888988753 333333333 345577777776
Q ss_pred HHHH
Q 015811 234 MNEL 237 (400)
Q Consensus 234 ~~~~ 237 (400)
..+.
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 6554
No 450
>PRK12798 chemotaxis protein; Reviewed
Probab=44.56 E-value=2.3e+02 Score=25.21 Aligned_cols=86 Identities=16% Similarity=0.037 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811 94 ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC-RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF 172 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (400)
.|+..++.+.+..+.....++....+..|+.+-. ...+..+|+.+|+...-..+. .-........-+......|+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPG----TLvEEAALRRsi~la~~~g~ 200 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPG----TLVEEAALRRSLFIAAQLGD 200 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCc----hHHHHHHHHHhhHHHHhcCc
Confidence 4556666666665554444555555555554332 334556666666654433210 11122333334444555555
Q ss_pred hHHHHHHHHHH
Q 015811 173 VDKAKELFLQM 183 (400)
Q Consensus 173 ~~~a~~~~~~~ 183 (400)
.++...+-...
T Consensus 201 ~~rf~~la~~Y 211 (421)
T PRK12798 201 ADKFEALARNY 211 (421)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 451
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.18 E-value=3.1e+02 Score=26.65 Aligned_cols=122 Identities=12% Similarity=0.105 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH----------hHHHHHHHH
Q 015811 133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVV----------TYTSLIHGF 202 (400)
Q Consensus 133 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~ 202 (400)
++-...+.+|..+-.+. --....+...++-.|....+++...++.+.+... ||.. .|...++--
T Consensus 180 ~~l~~~L~~mR~RlDnp---~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRR 253 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNP---DVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRR 253 (1226)
T ss_pred HHHHHHHHHHHhhcCCc---cccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhccc
Confidence 34455667776654211 1123455667777788888999999999988764 3221 233333333
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCcccH-----HHH--HHHHHhcCCchhHHHHHHHHHhCCCCCcH
Q 015811 203 CHANDWNEAKGLLIEMVDQG--VQPNVVSS-----NVI--MNELCKNGKMDNASRLLDLMVQCDVRPNA 262 (400)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~-----~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 262 (400)
.+-|+-++|+.+.-.+.+.. +.||.... .-+ ...|...+..+.|.++|++.-+. .|..
T Consensus 254 Nr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~ 320 (1226)
T KOG4279|consen 254 NRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLE 320 (1226)
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--Cchh
Confidence 34577888888887777653 44554322 111 12234455667788888877653 4443
No 452
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.10 E-value=1.7e+02 Score=23.39 Aligned_cols=57 Identities=25% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHhcCChHHHHHHHHHHH
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLI----NGLCRTGHTIVALNLFKEMT 143 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~ 143 (400)
-|......|+.+.|.+....+-..=+..|...+-.|. --+.+.|..++|+++.+.-.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 3444556666666666555543221122221111111 12345566666666665543
No 453
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.05 E-value=2.4e+02 Score=25.05 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChhhHHHHHHHHHhccCCccHH--HHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 31 LSLFKRLNSIGLFPDLYT--YSILINCFCKMGQVSLGFVIFGRILRSCFAPNVV--TFTSLIKGLCAESRIVEAAALFTK 106 (400)
Q Consensus 31 ~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 106 (400)
.++++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 015811 107 LKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE 186 (400)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 186 (400)
-.... ......-.+.+...+..|+.+-+..+++.-.. +......-.+.+...+..|+.+-+..+++.-...
T Consensus 91 ~~~~~-~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad--------~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~ 161 (413)
T PHA02875 91 GKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIARGAD--------PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL 161 (413)
T ss_pred CCccc-ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC--------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH---HHHHHHHhcCCchhHHHHHHHHHhCCCCCcHH
Q 015811 187 NLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSN---VIMNELCKNGKMDNASRLLDLMVQCDVRPNAF 263 (400)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 263 (400)
... |..-.+.+..+..... .++.+.+.+.|..++...-. ..+...+..|+. ++.+.+.+.|..++..
T Consensus 162 ~~~-d~~g~TpL~~A~~~g~-----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 162 DIE-DCCGCTPLIIAMAKGD-----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNIM 231 (413)
T ss_pred CCC-CCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcchH
Q ss_pred --------HHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811 264 --------TYNTLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 264 --------~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
+.-.++..+......+....+...+.
T Consensus 232 ~~~~~~~~t~l~~~~~~~~~~~~~~~~~li~~i~ 265 (413)
T PHA02875 232 FMIEGEECTILDMICNMCTNLESEAIDALIADIA 265 (413)
T ss_pred hhcCCCchHHHHHHHhhcCCcccHHHHHHHHHHH
No 454
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.87 E-value=1.5e+02 Score=22.50 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=33.1
Q ss_pred HHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811 184 KYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD 244 (400)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (400)
...|+..+. .-..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 18 ~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 334544332 233444444444555666777777776665566666555566666665543
No 455
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.38 E-value=1.7e+02 Score=23.21 Aligned_cols=22 Identities=14% Similarity=-0.025 Sum_probs=11.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 015811 89 KGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
....+.|+.++|.+.|.++...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcC
Confidence 4444555555555555555543
No 456
>PRK14700 recombination factor protein RarA; Provisional
Probab=42.28 E-value=2.1e+02 Score=24.14 Aligned_cols=67 Identities=13% Similarity=0.023 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCC
Q 015811 158 VTYSIIIDGLCK---EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND-----WNEAKGLLIEMVDQGVQ 224 (400)
Q Consensus 158 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 224 (400)
..+..+++++.+ -.|++.|+-++..|++.|-.|....-..++-++-.-|. ...|...++.....|.+
T Consensus 124 d~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 124 KEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred chhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 344445555544 46778888888888887766666655556655555553 23344444444444543
No 457
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.84 E-value=3.4e+02 Score=26.37 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (400)
|..+..++.-..+.+.+.++++++.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 34455566666666666666666665
No 458
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.55 E-value=1.1e+02 Score=20.87 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHhhhhhCCC
Q 015811 266 NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE--VEEALSLYNELPFKGI 328 (400)
Q Consensus 266 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~ 328 (400)
..++.-|...++.++|...+.++... .........++..+...++ -+....++..+...+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 34555666667777777777665321 1122233344444444322 2334445555554443
No 459
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.29 E-value=92 Score=21.74 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=17.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 130 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 130 (400)
..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 15 ~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 15 ELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 333333334444445555444443444444334444444444
No 460
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.88 E-value=1.8e+02 Score=22.75 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=37.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL-YTYSILINCFCKMGQVSLGF 66 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~ 66 (400)
..+.++..+...|+++.|-+.|.-+.+.. ..|. ..|..-+..+.+.+.-....
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~ 96 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSEL 96 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHH
Confidence 45678888999999999999999998754 3343 34666666666555444333
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.43 E-value=1.7e+02 Score=22.19 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 130 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 130 (400)
++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334444555555554444444444444444444444
No 462
>PRK12798 chemotaxis protein; Reviewed
Probab=39.21 E-value=2.8e+02 Score=24.70 Aligned_cols=193 Identities=11% Similarity=0.073 Sum_probs=114.1
Q ss_pred hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHH
Q 015811 128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL-CKEGFVDKAKELFLQMKYENLNPNV----VTYTSLIHGF 202 (400)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 202 (400)
-.|+..++.+.+..+.... .++....+-.|+.+- ....++..|+++|+...-. -|.+ .....-+...
T Consensus 124 ~~Gr~~~a~~~La~i~~~~------l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la 195 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEY------LPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIA 195 (421)
T ss_pred HcCCHHHHHHHhhcCChhh------cCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHH
Confidence 3689999999998887766 566667777776654 4557899999999987643 2332 2334445556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChH
Q 015811 203 CHANDWNEAKGLLIEMVDQGVQPNV---VSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKIN 279 (400)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 279 (400)
.+.|+.+++..+-..-...- .-++ ..+..+...+.+.++-..-..+...+......--...|-.+.+.-...|+.+
T Consensus 196 ~~~g~~~rf~~la~~Y~rRF-~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~ 274 (421)
T PRK12798 196 AQLGDADKFEALARNYLRRF-RHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTE 274 (421)
T ss_pred HhcCcHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHH
Confidence 78888888776655554431 1111 2233344444444433322222222222121223457888888888899998
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHhhhhhCCCCcC
Q 015811 280 RVKELFVSMESMGCKHDDFSYNILINGY-----CKNKEVEEALSLYNELPFKGIKPT 331 (400)
Q Consensus 280 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~~~p~ 331 (400)
.|.-.-++........+. -......| .-..+++++...+..+....+.|.
T Consensus 275 lA~~As~~A~~L~~~~~~--~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 275 LARFASERALKLADPDSA--DAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHHHHHHHHhccCCCc--chHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 888888777664312111 11122222 335668888888888776655543
No 463
>PF13934 ELYS: Nuclear pore complex assembly
Probab=39.08 E-value=2e+02 Score=23.06 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHHHH--HhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015811 230 SNVIMNEL--CKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGY 307 (400)
Q Consensus 230 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 307 (400)
+...++++ ...+++++|.+.+..- .+.| ..-..++.++...|+.+.|..+++...... .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-
Confidence 44444444 3456677777666322 1122 222346777777888888888887764321 122233333333
Q ss_pred HhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccc
Q 015811 308 CKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIR 346 (400)
Q Consensus 308 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 346 (400)
..++.+.+|+.+.+...+. -....+..++..+....
T Consensus 151 La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHh
Confidence 6678889998888776652 12456777777666443
No 464
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=38.94 E-value=2.2e+02 Score=23.45 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
...+++.+.+.+....|..+.+.+.
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhc
Confidence 3456666666666666666666554
No 465
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.94 E-value=4.4e+02 Score=26.86 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHhcC--CchhHHHHHHHHHhC
Q 015811 228 VSSNVIMNELCKNG--KMDNASRLLDLMVQC 256 (400)
Q Consensus 228 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 256 (400)
..+..++.+|++.+ +++.|+.....+.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34455666666666 666666666666654
No 466
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.87 E-value=3.2e+02 Score=25.96 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=60.1
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCC------HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPD------LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
..+..+|..+.+.|..-... ++.| ......+.-+|....++++|.+++++..+... .+..+---+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-QSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHh
Confidence 34566788888888776543 2222 22455666677788899999999999988642 2455555566777788
Q ss_pred CCHHHHHHHHHHHHH
Q 015811 95 SRIVEAAALFTKLKA 109 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~ 109 (400)
+..++|+........
T Consensus 442 ~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKS 456 (872)
T ss_pred cchHHHHHHHHHHHh
Confidence 888888887766543
No 467
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.80 E-value=1.6e+02 Score=21.66 Aligned_cols=21 Identities=5% Similarity=-0.032 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHhccCCccHH
Q 015811 62 VSLGFVIFGRILRSCFAPNVV 82 (400)
Q Consensus 62 ~~~a~~~~~~~~~~~~~~~~~ 82 (400)
.-.|.++++.+.+.+...+..
T Consensus 33 h~sa~eI~~~l~~~~~~i~~a 53 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLA 53 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHH
Confidence 444455555544444333333
No 468
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.74 E-value=2.4e+02 Score=23.87 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811 248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMES 290 (400)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (400)
++++.+.+.++.|.-..+..+.-.+.+.=.+.++..+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555555555555555555566666665553
No 469
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.35 E-value=2.6e+02 Score=24.13 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811 279 NRVKELFVSMESMGCKHDD----FSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL 342 (400)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 342 (400)
+++..+++.++.. -|+. ..|-++++.....|.++.++.+|++++..|..|-...-..++..+
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4555555555443 2332 345666666666777777777777777776666555544444443
No 470
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.31 E-value=1.5e+02 Score=21.15 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 015811 280 RVKELFVSMESMGCK-HDDFSYNILINGYCKNKEVEEALSLYNE 322 (400)
Q Consensus 280 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 322 (400)
.+.++|..|...|+- --+..|......+...|++++|..+|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555666666554432 2344555555556666666666666543
No 471
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.95 E-value=2.6e+02 Score=23.69 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHH-HHHHhCCCCCcHHHHHHHHHHHHcCCChHHHH
Q 015811 206 NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLL-DLMVQCDVRPNAFTYNTLMDGFCLTGKINRVK 282 (400)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 282 (400)
..+++.....++-.+..--|+......+-.+......|.+-.++. +...+ ....|..|+.+++.+|+.+..+
T Consensus 269 ~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHH
Confidence 345555555544333333455554444444444444444333332 22222 2346777888888888876543
No 472
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.93 E-value=3.1e+02 Score=24.55 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=32.1
Q ss_pred cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHhcCCCCC
Q 015811 240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGK-----INRVKELFVSMESMGCKHD 296 (400)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 296 (400)
..+++.|..++..|.+.|..|....-..++.++-..|. ...|...++.....|.+--
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~ 304 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEG 304 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHH
Confidence 46777788888888877766554444444444433332 2344555555566664433
No 473
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.39 E-value=3.2e+02 Score=25.99 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=58.3
Q ss_pred HhcCCchhHHHHHHHHHhCCCCCc------HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 015811 238 CKNGKMDNASRLLDLMVQCDVRPN------AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNK 311 (400)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 311 (400)
.+..++..+.+.|..-... ++.| ......+..+|....+.|.|.++++++.+.+ +.++.+--.+..+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhc
Confidence 4556677777777655432 1222 2345666777888889999999999998875 445555556667777888
Q ss_pred CHHHHHHHHhhhh
Q 015811 312 EVEEALSLYNELP 324 (400)
Q Consensus 312 ~~~~A~~~~~~~~ 324 (400)
.-++|+.......
T Consensus 443 ~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 443 KSEEALTCLQKIK 455 (872)
T ss_pred chHHHHHHHHHHH
Confidence 8888888776654
No 474
>PRK09857 putative transposase; Provisional
Probab=36.20 E-value=2.7e+02 Score=23.54 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC
Q 015811 301 NILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD 366 (400)
Q Consensus 301 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 366 (400)
..++......++.++-..+++.+.+. .+......-++..-+...|.-+++++..++|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33444434455555555555544433 122222333444455555655667777777777776544
No 475
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=36.12 E-value=39 Score=18.82 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=24.2
Q ss_pred CCCCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 015811 4 MHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLN 38 (400)
Q Consensus 4 ~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 38 (400)
.+..|.....+..+...+..++....++++|+++.
T Consensus 8 D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 8 DHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp STTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 34567777888888887777777777777777654
No 476
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.93 E-value=1.3e+02 Score=19.75 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 102 ALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
++|+-....|+..|+.+|..++..+.-.=.++...++++.+....
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~ 73 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGS 73 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHccc
Confidence 566666667777777777777776666666666677777665543
No 477
>PRK09857 putative transposase; Provisional
Probab=35.56 E-value=2.7e+02 Score=23.48 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=21.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
...++.++..++++.+.+. .+......-++..-+...|..++++++..+|...|
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g 270 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESG 270 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444333 12222223333344444444444555555554443
No 478
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.55 E-value=3.1e+02 Score=24.06 Aligned_cols=57 Identities=5% Similarity=0.080 Sum_probs=35.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hcCCchhHHHHHHHHHh
Q 015811 199 IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC-KNGKMDNASRLLDLMVQ 255 (400)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 255 (400)
+..+.+.|.+..|.++.+-+...+..-|+.....+|..|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4455677777777777777777654446655555665553 55666666666665443
No 479
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.94 E-value=1.6e+02 Score=20.50 Aligned_cols=39 Identities=23% Similarity=0.056 Sum_probs=27.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL 126 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (400)
+++.+.++...++|+++++-|.+.| ..+...-+.|-..+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4566677888899999999999888 55555544444333
No 480
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.91 E-value=3.1e+02 Score=24.00 Aligned_cols=111 Identities=12% Similarity=0.130 Sum_probs=69.2
Q ss_pred ChhhHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH-hcCCHHHHHHHHHHHHHC--C----CCC
Q 015811 156 NTVTYSII---IDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFC-HANDWNEAKGLLIEMVDQ--G----VQP 225 (400)
Q Consensus 156 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~----~~~ 225 (400)
|...|.++ +..+.+.|.+..|+++.+-+...+..-|+.....+|..|+ ++++++-.+++.+..... . .-|
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 44444443 5677899999999999999988765546666666777664 667888788887776552 1 112
Q ss_pred CcccHHHHHHHHHhcCCc---------------hhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015811 226 NVVSSNVIMNELCKNGKM---------------DNASRLLDLMVQCDVRPNAFTYNTLMDGF 272 (400)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~---------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (400)
...|...+ ++...++. +.|...+......- +.++..|+..+
T Consensus 179 -n~a~S~aL-A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f----P~vl~~Ll~~l 234 (360)
T PF04910_consen 179 -NFAFSIAL-AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF----PWVLVPLLDKL 234 (360)
T ss_pred -cHHHHHHH-HHHHhcCccccccccccccccchhHHHHHHHHHHHHh----HHHHHHHHHHh
Confidence 23444433 34444554 67777776665532 34455555544
No 481
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=34.41 E-value=4.2e+02 Score=25.32 Aligned_cols=188 Identities=13% Similarity=0.077 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHh-CCCCCC--HHhHHHHHHHHH-hcCChhhHHHHHHHHHhccCCccHH-----HHHHHHHHHHhcCCHH
Q 015811 28 DTVLSLFKRLNS-IGLFPD--LYTYSILINCFC-KMGQVSLGFVIFGRILRSCFAPNVV-----TFTSLIKGLCAESRIV 98 (400)
Q Consensus 28 ~~a~~~~~~~~~-~g~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 98 (400)
..|+..++.+.+ ..++|. ..++..+...+. ...+++.|...+++.....-.++.. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 345666666663 333332 345666666665 6789999999999876543222211 2234566666666655
Q ss_pred HHHHHHHHHHHcCCC----CChhhHHHH-HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH--HhcC
Q 015811 99 EAAALFTKLKAFGCE----PNVITYNTL-INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL--CKEG 171 (400)
Q Consensus 99 ~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~ 171 (400)
|...+++.++.--. +-...|..+ +..+...++...|++.++.+....... ..|...++-.++.+. .+.+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~~~ 193 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLRRG 193 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhcCC
Confidence 98888887654211 222233333 233333479999999998887654210 123334444444443 3456
Q ss_pred ChHHHHHHHHHHHHcC---------CCCChHhHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 015811 172 FVDKAKELFLQMKYEN---------LNPNVVTYTSLIHGF--CHANDWNEAKGLLIEMV 219 (400)
Q Consensus 172 ~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 219 (400)
..+++.+.++.+.... ..|...+|..++..+ ...|+++.+...++++.
T Consensus 194 ~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 194 SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777888777764321 123455666666655 45677777777666554
No 482
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.18 E-value=5.5e+02 Score=26.64 Aligned_cols=126 Identities=12% Similarity=0.078 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPN----VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN 156 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (400)
...|..+++.+-+.+-.+.+.++-...++.- +++ ..+++.+.+.....|.+.+|...+-.-... ...
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--------err 1053 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--------ERR 1053 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--------HHH
Confidence 3456777788878888888877776666541 222 234556666677777777776655432111 111
Q ss_pred hhhHHHHHHHHHhcCChH------------HHHH-HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 015811 157 TVTYSIIIDGLCKEGFVD------------KAKE-LFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLL 215 (400)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 215 (400)
......++-.++..|.++ +... +++..-+........-|..|-..+...+++.+|-.+.
T Consensus 1054 rdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1054 RDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 223444455555555543 2333 2222222222222334555555556667776665443
No 483
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=34.11 E-value=5.2e+02 Score=26.27 Aligned_cols=249 Identities=8% Similarity=-0.029 Sum_probs=145.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 122 (400)
.++..+-...+..+.+.+..+ +...+..+++. ++..+-...+.++.+.+........+..+.. .++..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHH
Confidence 578888888888888877644 55555566543 3444444555555544322222234444443 2566665566
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF 202 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (400)
+..+...+..+ ...++. ... .+|...-...+.++...+..+. +..... .++...-...+.++
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---------D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL 766 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---------DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGL 766 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---------CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHH
Confidence 66665543221 222333 322 3455555666777766655432 222322 35667777777777
Q ss_pred HhcCCHHH-HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHH
Q 015811 203 CHANDWNE-AKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRV 281 (400)
Q Consensus 203 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 281 (400)
...+..+. +...+..+.. .++...-...+.++...|..+.+...+..+.+ .++..+-...+.++...+.. ++
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a 839 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VA 839 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-ch
Confidence 77765443 3455555554 34677778888889888887666555555554 34566666677777777764 45
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 282 KELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
...+..+.+ .|+...-...+.++.+.+....+...+..+.+.
T Consensus 840 ~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 840 VPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 555555554 456666667777777764445666677666653
No 484
>COG0819 TenA Putative transcription activator [Transcription]
Probab=33.72 E-value=2.5e+02 Score=22.47 Aligned_cols=51 Identities=4% Similarity=-0.002 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHh-hCCCCCChhhHHHHHHHhhcCCcch
Q 015811 333 VTYNTLFHGLFEIRQAERALKLFVEMQ-GNDVAADTCTYRTFIDGLCVRPQVR 384 (400)
Q Consensus 333 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~ 384 (400)
..|...+..|... ++.++.+.+.+.+ +..-..+..-+..+...+..+-+++
T Consensus 156 ~~Y~~Wi~~Y~s~-ef~~~v~~~~~~ld~~~~~~~~~~~~~l~~iF~~ss~~E 207 (218)
T COG0819 156 PPYQEWIDTYASE-EFQEAVEELEALLDSLAENSSEEELEKLKQIFLTASRFE 207 (218)
T ss_pred CcHHHHHHHcCCH-HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3455556655442 2333333222222 2222233344555555555544444
No 485
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.38 E-value=2.6e+02 Score=22.64 Aligned_cols=166 Identities=14% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc-
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCF-CKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE- 94 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 94 (400)
++..+-+.++++++...+.++...+...+..--+.+-.+| ...|....++.++..+.+....-.......++.-|...
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred -CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-----------------HHHHHHHHHHHcCCCcccccccCC
Q 015811 95 -SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT-----------------IVALNLFKEMTNGNGEIGVVFKPN 156 (400)
Q Consensus 95 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~a~~~~~~~~~~~~~~~~~~~~~ 156 (400)
.....--.-+-.++...+-|....-...+-.+-..|++ +.|.+.|+......... .+|.
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~---L~~~ 163 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKE---LPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHH---SCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcc---cCCC
Q ss_pred hhhHHHHHHHHHh-----cCChHHHHHHHHHHHH
Q 015811 157 TVTYSIIIDGLCK-----EGFVDKAKELFLQMKY 185 (400)
Q Consensus 157 ~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~ 185 (400)
..++-.++--++- .|+.++|.++-+...+
T Consensus 164 ~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 486
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=32.90 E-value=1.4e+02 Score=19.33 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc
Q 015811 295 HDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE 344 (400)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 344 (400)
|++.....++..+.. ++++++...+.++...|+.++ .....+...+..
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~ 50 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSAS-DILKQLHEVLVE 50 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHH
Confidence 344444555555544 477777777777777666533 233344443333
No 487
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.78 E-value=3.7e+02 Score=24.25 Aligned_cols=336 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
|-++.-|...|+..+|-+..+++. .+.......-+++...+.-..|..+.-.+...+...+...-..+.+++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~-----vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELG-----VSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhC-----CCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhh
Q ss_pred C--------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHH
Q 015811 95 S--------RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDG 166 (400)
Q Consensus 95 ~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (400)
+ +...|...|+.+.-..+.-+...-+.+-..-...|+.+. ++.|++ ....+|+-
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------------~~~~IIqE 354 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------------DLTPIIQE 354 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-----------------hhHHHHHH
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC----
Q 015811 167 LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK---- 242 (400)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 242 (400)
|...|+..+..+.++.+-.....|-...+..-+..=.++..-+.|..++..+.-. +-+....-+.+...+-...+
T Consensus 355 YFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD 433 (645)
T KOG0403|consen 355 YFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALD 433 (645)
T ss_pred HHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhcc
Q ss_pred chhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHH-----HhcCCCCCHHHH----------------H
Q 015811 243 MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSM-----ESMGCKHDDFSY----------------N 301 (400)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~----------------~ 301 (400)
.-.|-+.+.....+-+-.+.-.-..+=.......-...+.+.++.+ .+++-+--...| .
T Consensus 434 ~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~ 513 (645)
T KOG0403|consen 434 IPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKID 513 (645)
T ss_pred ccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 015811 302 ILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV 379 (400)
Q Consensus 302 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (400)
.|+.-|...|+..+|.+.++++----+. ....+.+++.+.-+.|+-...+.+++..-..|+- |-+.+-++|.+
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~R 586 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFER 586 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhh
No 488
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=32.78 E-value=97 Score=19.48 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=17.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 015811 24 NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCF 56 (400)
Q Consensus 24 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 56 (400)
.++.+.+.+++++....|.+|.......+..++
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 566666666666666655555544444444443
No 489
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.78 E-value=5.4e+02 Score=26.12 Aligned_cols=109 Identities=8% Similarity=-0.012 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHHcCCChHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHH
Q 015811 261 NAFTYNTLMDGFCLTGKINR-VKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLF 339 (400)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 339 (400)
+..+-...+.++...+..+. +...+..+.. .++...-...+.++...|..+.+...+..+.+. ++...-...+
T Consensus 755 ~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa 828 (897)
T PRK13800 755 NREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAA 828 (897)
T ss_pred CHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHH
Confidence 44444444445544443322 2233333332 234555555566666666544443333333322 2444444445
Q ss_pred HHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 015811 340 HGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV 379 (400)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (400)
.++...+. +++...+..+.+ .|+...-...+.++.+
T Consensus 829 ~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 829 RALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhc
Confidence 55554443 234444444432 3344444444555544
No 490
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.61 E-value=3e+02 Score=23.13 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=52.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCChHhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCc---
Q 015811 156 NTVTYSIIIDGLCKEGFVDKAKELFLQMKYE----NLNPNVVTYTS-LIHGFCHANDWNEAKGLLIEMVDQGVQPNV--- 227 (400)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 227 (400)
....+..+...|++.++.+.+.++..+..+. |.+.|+..... |.-.|....-.++.++..+.+.+.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 3456777778888888888887776665433 44444322221 222233333356667777777777643322
Q ss_pred -ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811 228 -VSSNVIMNELCKNGKMDNASRLLDLMVQ 255 (400)
Q Consensus 228 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (400)
.+|.-+- +....++.+|-.++.....
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2222221 2334556677666655543
No 491
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=4.3e+02 Score=24.79 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCC------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhcc------------
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPD------------LYTYSILINCFCKMGQVSLGFVIFGRILRSC------------ 76 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------ 76 (400)
+-....+++|...|.-....- .|+ +.+...+...+...|+.+.+-+++++.+=.=
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred eecchHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Q ss_pred --------CCccHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHc
Q 015811 77 --------FAPNVVTFTSL---IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC-RTGHTIVALNLFKEMTN 144 (400)
Q Consensus 77 --------~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 144 (400)
.+-|...|.++ +..+.+.|.+..|.++-..+.+....-|+.....+|+.|+ +..++.=.+++++....
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred CCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811 145 GNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF 202 (400)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (400)
.+.- .......|+..+..+.-.++-+.+.+.-......-+..-+...+-|+..+
T Consensus 407 ~n~l----~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~ 460 (665)
T KOG2422|consen 407 MNKL----SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLSELLDEL 460 (665)
T ss_pred hccH----hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHHhc
No 492
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=31.99 E-value=86 Score=16.65 Aligned_cols=26 Identities=8% Similarity=0.291 Sum_probs=15.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLN 38 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 38 (400)
+|..|...-..+++|++|..=|...+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45556666666666666666555543
No 493
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.86 E-value=3.6e+02 Score=23.81 Aligned_cols=54 Identities=7% Similarity=-0.143 Sum_probs=37.5
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHh--cCChhhHHHHHHH
Q 015811 18 LGCLAKNKHYDTVLSLFKRLNSIGLFPDLY----TYSILINCFCK--MGQVSLGFVIFGR 71 (400)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~--~~~~~~a~~~~~~ 71 (400)
+..+.+.+++..|.++|+++.....+|... .+..+..+|.. .-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 335677899999999999999876554443 33444444443 4577788888875
No 494
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=31.66 E-value=1.1e+02 Score=19.51 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=5.3
Q ss_pred HHHHHHHcCCCCC
Q 015811 103 LFTKLKAFGCEPN 115 (400)
Q Consensus 103 ~~~~~~~~~~~~~ 115 (400)
+++.+.+.|..++
T Consensus 74 ~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCCCC
Confidence 3444444444443
No 495
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.06 E-value=2.7e+02 Score=22.13 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhCC
Q 015811 232 VIMNELCKNGKMDNASRLLDLMVQCD 257 (400)
Q Consensus 232 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 257 (400)
.+.....+.|+.++|.+.|..+...+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34455566777777777777776654
No 496
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.68 E-value=3e+02 Score=22.54 Aligned_cols=59 Identities=17% Similarity=0.041 Sum_probs=33.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
.+..++...|++-++++.-..+.... +.++..|-.-..+.+..-+..+|..=|..+++.
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 33445555666666666666665542 334555555555555555666666666666554
No 497
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.42 E-value=1.5e+02 Score=19.02 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=15.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcc
Q 015811 53 INCFCKMGQVSLGFVIFGRILRSC 76 (400)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~~~~~~ 76 (400)
+..+.++.-.++|+++++.+.++|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444555666667777777776665
No 498
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.41 E-value=2.9e+02 Score=22.29 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=16.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC
Q 015811 198 LIHGFCHANDWNEAKGLLIEMVDQGV 223 (400)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~~~ 223 (400)
++--+...|+++.|+++...++++|.
T Consensus 89 ~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 89 VMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 33344566777777777777776664
No 499
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.37 E-value=2.9e+02 Score=22.28 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhCCCC
Q 015811 230 SNVIMNELCKNGKMDNASRLLDLMVQCDVR 259 (400)
Q Consensus 230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 259 (400)
+..++--+...|+++.|+++.+.++++|.+
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 334444567888999999999888888743
No 500
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.33 E-value=2e+02 Score=20.40 Aligned_cols=62 Identities=13% Similarity=0.011 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH----cCCCcccccccC-ChhhHHHH----HHHHHhcCChHHHHHHHHHH
Q 015811 117 ITYNTLINGLCRTGHTIVALNLFKEMT----NGNGEIGVVFKP-NTVTYSII----IDGLCKEGFVDKAKELFLQM 183 (400)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~-~~~~~~~l----~~~~~~~~~~~~a~~~~~~~ 183 (400)
.++..|..++...|++++++.--+... .++. ... .-..|... ..++...|..++|+..|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE-----L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE-----LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-------TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc-----cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 345566777778888877554333221 1110 111 12222222 23455678888888877654
Done!