Query 015811
Match_columns 400
No_of_seqs 695 out of 1579
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 19:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.6E-36 8.7E-41 277.1 33.1 371 8-393 147-576 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.5E-35 8.5E-40 270.6 35.8 376 9-393 82-542 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.4E-30 1.8E-34 222.4 43.2 361 17-393 5-365 (388)
4 4g26_A Pentatricopeptide repea 100.0 9.4E-33 3.2E-37 243.4 22.3 185 195-379 29-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-29 6.1E-34 219.1 42.0 358 7-381 29-387 (388)
6 4g26_A Pentatricopeptide repea 100.0 2.3E-32 7.8E-37 241.0 23.3 207 134-346 8-224 (501)
7 2y4t_A DNAJ homolog subfamily 100.0 3E-26 1E-30 202.9 38.3 366 6-388 21-446 (450)
8 2gw1_A Mitochondrial precursor 100.0 3.2E-26 1.1E-30 206.2 35.4 373 11-393 6-475 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 1.4E-24 4.8E-29 192.2 37.5 327 31-374 12-370 (450)
10 3fp2_A TPR repeat-containing p 99.9 1E-23 3.5E-28 190.9 36.1 365 11-393 25-488 (537)
11 2gw1_A Mitochondrial precursor 99.9 7.3E-24 2.5E-28 190.8 33.0 345 9-368 37-483 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1.6E-22 5.5E-27 173.3 37.6 303 10-326 2-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 1E-21 3.5E-26 168.3 37.2 317 45-377 2-350 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.4E-21 4.8E-26 176.9 35.3 341 7-362 55-492 (537)
15 3hym_B Cell division cycle pro 99.9 1.2E-21 4.2E-26 165.8 31.9 294 43-349 19-322 (330)
16 3hym_B Cell division cycle pro 99.9 2.6E-21 8.8E-26 163.8 33.2 285 80-377 21-314 (330)
17 2xm6_A Protein corresponding t 99.9 1.1E-18 3.6E-23 155.9 45.5 349 9-393 37-429 (490)
18 1fch_A Peroxisomal targeting s 99.9 1.8E-21 6E-26 167.5 23.1 303 58-391 37-354 (368)
19 1fch_A Peroxisomal targeting s 99.9 5.7E-21 2E-25 164.3 25.7 291 21-322 35-355 (368)
20 4eqf_A PEX5-related protein; a 99.9 2.7E-20 9.4E-25 159.9 25.3 278 10-323 64-353 (365)
21 4eqf_A PEX5-related protein; a 99.9 6E-21 2.1E-25 164.0 19.9 265 80-356 64-351 (365)
22 2xm6_A Protein corresponding t 99.9 1.5E-17 5E-22 148.5 40.9 321 10-363 74-434 (490)
23 3cv0_A Peroxisome targeting si 99.9 2.4E-19 8.1E-24 151.5 26.8 283 9-325 19-314 (327)
24 3cv0_A Peroxisome targeting si 99.9 3.8E-19 1.3E-23 150.2 27.1 281 45-359 20-313 (327)
25 2ooe_A Cleavage stimulation fa 99.9 1.5E-17 5.2E-22 149.9 37.5 372 7-392 9-488 (530)
26 4g1t_A Interferon-induced prot 99.8 1.3E-17 4.4E-22 148.4 32.9 366 6-394 46-457 (472)
27 3mkr_A Coatomer subunit epsilo 99.8 3.3E-18 1.1E-22 141.2 25.9 248 21-290 9-263 (291)
28 3mkr_A Coatomer subunit epsilo 99.8 6.7E-18 2.3E-22 139.4 26.4 278 53-355 6-288 (291)
29 1b89_A Protein (clathrin heavy 99.8 5.3E-19 1.8E-23 149.2 17.1 266 12-320 33-305 (449)
30 1b89_A Protein (clathrin heavy 99.8 7.5E-19 2.6E-23 148.3 15.5 281 23-353 15-303 (449)
31 2ooe_A Cleavage stimulation fa 99.8 2.1E-15 7.2E-20 135.9 36.7 339 7-360 42-491 (530)
32 3spa_A Mtrpol, DNA-directed RN 99.8 3.2E-19 1.1E-23 162.6 9.6 151 226-381 126-286 (1134)
33 3uq3_A Heat shock protein STI1 99.8 2.1E-16 7E-21 128.6 25.1 233 80-326 4-236 (258)
34 3uq3_A Heat shock protein STI1 99.8 5.3E-17 1.8E-21 132.1 21.3 225 11-255 5-235 (258)
35 3spa_A Mtrpol, DNA-directed RN 99.8 3.2E-19 1.1E-23 162.7 8.1 153 12-171 128-286 (1134)
36 2pl2_A Hypothetical conserved 99.8 1.2E-16 4E-21 126.3 21.7 199 8-218 2-211 (217)
37 4g1t_A Interferon-induced prot 99.8 1.5E-15 5.2E-20 135.0 30.2 333 7-362 90-460 (472)
38 2pl2_A Hypothetical conserved 99.8 1.4E-16 4.8E-21 125.8 20.2 200 43-254 2-212 (217)
39 3u4t_A TPR repeat-containing p 99.8 1E-15 3.5E-20 125.6 25.7 199 12-220 4-207 (272)
40 1xi4_A Clathrin heavy chain; a 99.8 1.3E-14 4.5E-19 137.0 35.3 321 10-393 984-1306(1630)
41 2h6f_A Protein farnesyltransfe 99.7 4.2E-16 1.4E-20 132.9 22.9 234 10-256 96-348 (382)
42 3u4t_A TPR repeat-containing p 99.7 1.6E-15 5.4E-20 124.5 24.8 234 47-292 4-251 (272)
43 1ouv_A Conserved hypothetical 99.7 1.2E-14 4E-19 119.3 29.9 226 8-257 3-252 (273)
44 3e4b_A ALGK; tetratricopeptide 99.7 1.4E-15 4.8E-20 133.7 25.7 343 15-392 7-383 (452)
45 1xi4_A Clathrin heavy chain; a 99.7 3.4E-14 1.2E-18 134.3 34.9 318 15-390 1053-1378(1630)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.2E-16 2.1E-20 127.1 20.5 198 82-291 44-244 (275)
47 2h6f_A Protein farnesyltransfe 99.7 3.4E-15 1.2E-19 127.4 25.2 217 46-275 97-322 (382)
48 2vq2_A PILW, putative fimbrial 99.7 3.8E-15 1.3E-19 118.4 23.8 205 8-221 5-211 (225)
49 2q7f_A YRRB protein; TPR, prot 99.7 8.7E-16 3E-20 123.7 20.0 201 10-221 22-222 (243)
50 2ho1_A Type 4 fimbrial biogene 99.7 3.1E-15 1.1E-19 121.2 23.3 203 46-257 37-239 (252)
51 1ouv_A Conserved hypothetical 99.7 5.2E-14 1.8E-18 115.5 30.2 224 45-292 5-252 (273)
52 1xnf_A Lipoprotein NLPI; TPR, 99.7 8E-16 2.7E-20 126.4 19.3 247 93-355 17-269 (275)
53 2ho1_A Type 4 fimbrial biogene 99.7 2.1E-14 7.2E-19 116.3 26.3 202 81-292 37-239 (252)
54 2vq2_A PILW, putative fimbrial 99.7 2.4E-14 8.2E-19 113.7 25.6 96 47-144 9-105 (225)
55 2q7f_A YRRB protein; TPR, prot 99.7 2.8E-15 9.7E-20 120.7 19.7 128 48-184 25-152 (243)
56 3sf4_A G-protein-signaling mod 99.7 2.6E-15 8.8E-20 130.7 18.4 280 8-289 6-334 (406)
57 3sf4_A G-protein-signaling mod 99.7 5.4E-15 1.9E-19 128.7 19.8 305 43-348 6-363 (406)
58 4a1s_A PINS, partner of inscut 99.7 4.5E-15 1.5E-19 129.5 17.4 275 84-360 51-371 (411)
59 4a1s_A PINS, partner of inscut 99.7 7.4E-15 2.5E-19 128.1 18.5 278 47-326 49-372 (411)
60 3e4b_A ALGK; tetratricopeptide 99.6 6.1E-13 2.1E-17 116.9 29.2 305 26-359 89-419 (452)
61 3ro2_A PINS homolog, G-protein 99.6 7.8E-15 2.7E-19 124.1 16.3 208 11-220 5-251 (338)
62 2ond_A Cleavage stimulation fa 99.6 3.4E-13 1.2E-17 112.5 25.9 233 11-255 8-269 (308)
63 3ulq_A Response regulator aspa 99.6 3.9E-14 1.3E-18 122.3 20.8 302 21-324 22-366 (383)
64 3ro2_A PINS homolog, G-protein 99.6 1.4E-14 4.6E-19 122.6 17.6 205 47-253 6-249 (338)
65 3vtx_A MAMA; tetratricopeptide 99.6 8.3E-14 2.8E-18 106.9 20.4 168 9-186 3-170 (184)
66 3ulq_A Response regulator aspa 99.6 1.1E-13 3.8E-18 119.4 22.8 300 56-360 22-367 (383)
67 2ond_A Cleavage stimulation fa 99.6 1.2E-12 4.1E-17 109.2 27.7 218 98-326 33-270 (308)
68 4abn_A Tetratricopeptide repea 99.6 9E-14 3.1E-18 123.0 20.5 214 97-323 84-318 (474)
69 3vtx_A MAMA; tetratricopeptide 99.6 3.9E-13 1.3E-17 103.1 21.2 167 156-326 4-170 (184)
70 4e6h_A MRNA 3'-END-processing 99.6 1.7E-11 5.8E-16 111.6 33.3 377 7-393 62-567 (679)
71 4abn_A Tetratricopeptide repea 99.6 1.3E-13 4.5E-18 121.9 19.1 215 131-358 83-318 (474)
72 3nf1_A KLC 1, kinesin light ch 99.6 8.2E-14 2.8E-18 116.5 15.5 249 7-256 23-307 (311)
73 3q15_A PSP28, response regulat 99.6 9.5E-13 3.3E-17 113.3 21.8 313 9-324 8-363 (378)
74 4gyw_A UDP-N-acetylglucosamine 99.5 2.7E-13 9.2E-18 124.8 18.8 171 5-185 3-173 (723)
75 3nf1_A KLC 1, kinesin light ch 99.5 5.5E-14 1.9E-18 117.6 13.0 176 45-220 26-223 (311)
76 3as5_A MAMA; tetratricopeptide 99.5 1.2E-12 4E-17 100.4 17.9 167 10-186 7-173 (186)
77 1hz4_A MALT regulatory protein 99.5 1.6E-11 5.5E-16 105.5 26.4 275 13-289 16-320 (373)
78 1hz4_A MALT regulatory protein 99.5 3.3E-11 1.1E-15 103.5 28.3 277 49-325 17-321 (373)
79 3q15_A PSP28, response regulat 99.5 7.2E-12 2.5E-16 107.8 23.3 314 43-360 7-364 (378)
80 4i17_A Hypothetical protein; T 99.5 1.1E-11 3.6E-16 98.7 21.1 198 8-222 4-210 (228)
81 4e6h_A MRNA 3'-END-processing 99.5 7.7E-10 2.6E-14 100.9 34.5 223 154-380 340-587 (679)
82 4i17_A Hypothetical protein; T 99.5 3.2E-11 1.1E-15 95.9 22.1 204 154-370 4-216 (228)
83 3as5_A MAMA; tetratricopeptide 99.5 1.6E-11 5.4E-16 94.0 19.5 165 47-221 9-173 (186)
84 4gyw_A UDP-N-acetylglucosamine 99.5 5.9E-12 2E-16 116.0 19.8 166 45-220 8-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.4 7.5E-12 2.6E-16 102.9 15.2 234 22-256 12-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.4 2.5E-11 8.5E-16 99.8 17.7 165 57-221 12-198 (283)
87 3mv2_B Coatomer subunit epsilo 99.4 6.3E-10 2.1E-14 90.2 23.9 246 18-292 20-283 (310)
88 3qky_A Outer membrane assembly 99.3 1.9E-10 6.5E-15 93.4 19.6 174 7-186 11-224 (261)
89 1qqe_A Vesicular transport pro 99.3 3.7E-10 1.3E-14 93.3 20.7 198 125-325 46-268 (292)
90 2pzi_A Probable serine/threoni 99.3 8.2E-11 2.8E-15 108.8 17.2 172 22-206 402-582 (681)
91 3qky_A Outer membrane assembly 99.3 1.6E-10 5.5E-15 93.9 17.0 215 154-390 12-255 (261)
92 2fo7_A Synthetic consensus TPR 99.3 3E-10 1E-14 81.7 16.5 131 12-145 2-132 (136)
93 3mv2_B Coatomer subunit epsilo 99.3 1.4E-09 4.8E-14 88.2 20.8 179 135-326 85-282 (310)
94 2r5s_A Uncharacterized protein 99.3 1.1E-10 3.7E-15 88.6 13.5 169 8-185 3-172 (176)
95 3urz_A Uncharacterized protein 99.3 5.5E-10 1.9E-14 87.2 17.7 138 232-375 59-198 (208)
96 2pzi_A Probable serine/threoni 99.3 5.7E-10 1.9E-14 103.2 20.5 186 127-324 402-603 (681)
97 1qqe_A Vesicular transport pro 99.3 3.7E-10 1.3E-14 93.2 17.2 233 99-360 3-268 (292)
98 2fo7_A Synthetic consensus TPR 99.2 8.7E-10 3E-14 79.2 16.9 129 48-185 3-131 (136)
99 3urz_A Uncharacterized protein 99.2 4E-10 1.4E-14 88.0 16.0 163 12-185 5-185 (208)
100 3dra_A Protein farnesyltransfe 99.2 4E-08 1.4E-12 80.5 27.3 218 62-290 49-286 (306)
101 4ga2_A E3 SUMO-protein ligase 99.2 8.3E-11 2.8E-15 86.5 10.4 146 17-172 3-149 (150)
102 3qou_A Protein YBBN; thioredox 99.2 3.8E-10 1.3E-14 92.9 15.0 167 43-219 114-282 (287)
103 3dra_A Protein farnesyltransfe 99.2 1.8E-08 6.1E-13 82.6 24.5 234 23-268 44-299 (306)
104 3rjv_A Putative SEL1 repeat pr 99.2 5.8E-09 2E-13 81.6 20.1 177 28-222 3-198 (212)
105 2uy1_A Cleavage stimulation fa 99.2 3.2E-07 1.1E-11 81.2 32.6 199 11-221 15-242 (493)
106 2yhc_A BAMD, UPF0169 lipoprote 99.2 6.7E-09 2.3E-13 82.1 19.5 185 11-222 4-214 (225)
107 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.3E-08 4.3E-13 80.5 21.1 184 45-257 3-214 (225)
108 3rjv_A Putative SEL1 repeat pr 99.2 5.5E-09 1.9E-13 81.7 18.4 178 175-364 4-200 (212)
109 2vsy_A XCC0866; transferase, g 99.1 2.7E-09 9.2E-14 97.0 18.5 154 24-187 2-158 (568)
110 4ga2_A E3 SUMO-protein ligase 99.1 5.1E-10 1.7E-14 82.3 10.6 143 54-206 5-148 (150)
111 3qou_A Protein YBBN; thioredox 99.1 6.4E-09 2.2E-13 85.5 18.0 162 81-252 117-280 (287)
112 2ifu_A Gamma-SNAP; membrane fu 99.1 3E-09 1E-13 88.5 16.0 165 159-324 38-222 (307)
113 2r5s_A Uncharacterized protein 99.1 1.4E-09 4.7E-14 82.4 12.2 160 49-218 9-170 (176)
114 2vsy_A XCC0866; transferase, g 99.1 4.9E-09 1.7E-13 95.3 17.7 154 59-222 2-158 (568)
115 2uy1_A Cleavage stimulation fa 99.1 1.8E-07 6.1E-12 82.8 25.9 209 23-256 6-242 (493)
116 4gco_A Protein STI-1; structur 99.0 3.9E-09 1.3E-13 74.8 12.1 114 7-123 9-122 (126)
117 2ifu_A Gamma-SNAP; membrane fu 99.0 2.6E-08 8.8E-13 82.8 17.6 135 118-254 78-222 (307)
118 2lni_A Stress-induced-phosphop 99.0 1.8E-08 6.3E-13 72.0 13.8 122 6-130 11-132 (133)
119 3q7a_A Farnesyltransferase alp 99.0 1.3E-06 4.6E-11 72.3 26.0 176 57-243 65-258 (349)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 9.1E-08 3.1E-12 74.8 18.5 129 12-146 7-151 (213)
121 3q7a_A Farnesyltransferase alp 99.0 3.5E-07 1.2E-11 75.8 22.4 183 14-207 57-257 (349)
122 2c2l_A CHIP, carboxy terminus 99.0 6.5E-09 2.2E-13 85.2 12.1 196 8-220 1-198 (281)
123 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.1E-07 3.7E-12 74.3 18.5 135 48-187 8-151 (213)
124 3gyz_A Chaperone protein IPGC; 99.0 8.2E-09 2.8E-13 75.4 11.0 124 13-146 11-134 (151)
125 1na0_A Designed protein CTPR3; 98.9 4.4E-08 1.5E-12 69.0 14.5 115 11-128 9-123 (125)
126 1a17_A Serine/threonine protei 98.9 4E-08 1.4E-12 73.4 14.7 131 11-144 13-145 (166)
127 3u3w_A Transcriptional activat 98.9 2E-07 6.7E-12 77.0 19.7 161 164-324 82-264 (293)
128 2vyi_A SGTA protein; chaperone 98.9 2.5E-08 8.6E-13 71.0 12.5 122 8-132 9-130 (131)
129 4gco_A Protein STI-1; structur 98.9 5.7E-08 2E-12 68.7 13.8 99 46-146 13-111 (126)
130 2qfc_A PLCR protein; TPR, HTH, 98.9 1.5E-07 5.2E-12 77.6 18.5 172 12-185 76-265 (293)
131 3u3w_A Transcriptional activat 98.9 3.8E-07 1.3E-11 75.2 20.7 165 121-290 80-265 (293)
132 1a17_A Serine/threonine protei 98.9 1.1E-07 3.6E-12 71.0 15.9 128 229-359 15-144 (166)
133 2e2e_A Formate-dependent nitri 98.9 2.5E-08 8.7E-13 75.5 12.5 123 21-146 20-145 (177)
134 2c2l_A CHIP, carboxy terminus 98.9 2.5E-08 8.7E-13 81.6 11.7 97 81-185 4-100 (281)
135 3gyz_A Chaperone protein IPGC; 98.8 5.3E-08 1.8E-12 71.1 12.0 100 80-187 35-134 (151)
136 2lni_A Stress-induced-phosphop 98.8 1.4E-07 4.9E-12 67.3 14.3 120 43-171 13-132 (133)
137 2e2e_A Formate-dependent nitri 98.8 6.4E-08 2.2E-12 73.2 12.9 120 204-326 22-144 (177)
138 2qfc_A PLCR protein; TPR, HTH, 98.8 5.1E-07 1.7E-11 74.4 19.2 170 81-254 75-264 (293)
139 1na0_A Designed protein CTPR3; 98.8 2.5E-07 8.4E-12 65.1 14.9 115 46-169 9-123 (125)
140 3gw4_A Uncharacterized protein 98.8 5E-08 1.7E-12 75.6 12.1 163 21-185 2-175 (203)
141 2vgx_A Chaperone SYCD; alterna 98.8 4.7E-08 1.6E-12 71.4 11.1 99 45-145 20-118 (148)
142 3dss_A Geranylgeranyl transfer 98.8 1.2E-05 4E-10 66.4 26.3 198 13-221 28-267 (331)
143 4f3v_A ESX-1 secretion system 98.8 2.6E-07 8.8E-12 74.0 15.9 190 23-222 18-238 (282)
144 2vgx_A Chaperone SYCD; alterna 98.8 6.7E-08 2.3E-12 70.6 11.7 102 7-110 17-118 (148)
145 3upv_A Heat shock protein STI1 98.8 1.3E-07 4.4E-12 67.0 12.8 100 9-110 2-101 (126)
146 2xcb_A PCRH, regulatory protei 98.8 5.2E-08 1.8E-12 70.7 10.7 102 7-110 14-115 (142)
147 1p5q_A FKBP52, FK506-binding p 98.8 7.7E-08 2.6E-12 80.9 13.2 132 10-143 146-292 (336)
148 2vyi_A SGTA protein; chaperone 98.8 2.1E-07 7E-12 66.1 13.8 120 45-173 11-130 (131)
149 3gw4_A Uncharacterized protein 98.8 1.4E-07 4.7E-12 73.0 13.1 163 57-220 3-175 (203)
150 2kck_A TPR repeat; tetratricop 98.8 1.5E-07 5.3E-12 64.7 12.1 102 8-111 3-107 (112)
151 4gcn_A Protein STI-1; structur 98.8 2E-07 7E-12 66.0 12.7 108 11-121 8-121 (127)
152 1p5q_A FKBP52, FK506-binding p 98.8 3E-07 1E-11 77.3 15.6 152 24-184 126-292 (336)
153 3sz7_A HSC70 cochaperone (SGT) 98.7 2.8E-07 9.7E-12 68.6 13.5 103 7-111 7-109 (164)
154 4f3v_A ESX-1 secretion system 98.7 5E-07 1.7E-11 72.3 15.5 196 93-292 18-238 (282)
155 1elw_A TPR1-domain of HOP; HOP 98.7 4.2E-07 1.5E-11 63.1 13.7 110 10-122 3-112 (118)
156 2fbn_A 70 kDa peptidylprolyl i 98.7 1.8E-08 6.1E-13 77.9 6.7 98 46-144 38-150 (198)
157 3q49_B STIP1 homology and U bo 98.7 1.9E-07 6.4E-12 67.2 11.7 103 6-110 4-106 (137)
158 2xcb_A PCRH, regulatory protei 98.7 1.1E-07 3.8E-12 68.9 10.5 100 45-146 17-116 (142)
159 3dss_A Geranylgeranyl transfer 98.7 3.5E-05 1.2E-09 63.6 26.2 165 57-232 40-232 (331)
160 2dba_A Smooth muscle cell asso 98.7 9.9E-07 3.4E-11 64.2 15.6 112 8-123 25-140 (148)
161 1elr_A TPR2A-domain of HOP; HO 98.7 1.4E-07 4.8E-12 67.1 10.4 113 10-125 3-121 (131)
162 1elw_A TPR1-domain of HOP; HOP 98.7 1.4E-06 4.8E-11 60.4 14.8 100 45-146 3-102 (118)
163 3upv_A Heat shock protein STI1 98.7 4.5E-07 1.5E-11 64.1 12.3 93 231-325 8-100 (126)
164 2fbn_A 70 kDa peptidylprolyl i 98.7 8.6E-08 2.9E-12 74.0 8.9 150 53-212 11-176 (198)
165 1wao_1 Serine/threonine protei 98.6 9.6E-08 3.3E-12 84.3 9.2 127 11-140 6-134 (477)
166 1hxi_A PEX5, peroxisome target 98.6 4.8E-07 1.6E-11 63.4 10.8 98 11-110 17-114 (121)
167 4gcn_A Protein STI-1; structur 98.6 6.3E-07 2.2E-11 63.4 11.5 113 81-196 8-120 (127)
168 2kck_A TPR repeat; tetratricop 98.6 9.6E-07 3.3E-11 60.6 12.1 90 268-359 12-104 (112)
169 3q49_B STIP1 homology and U bo 98.6 1.5E-06 5E-11 62.4 12.9 102 43-146 6-107 (137)
170 3sz7_A HSC70 cochaperone (SGT) 98.6 1.3E-06 4.5E-11 64.9 12.9 100 45-146 10-109 (164)
171 1elr_A TPR2A-domain of HOP; HO 98.6 6.6E-07 2.2E-11 63.5 10.5 92 233-325 10-107 (131)
172 1hxi_A PEX5, peroxisome target 98.5 9.3E-07 3.2E-11 61.9 10.6 91 268-360 23-113 (121)
173 4b4t_Q 26S proteasome regulato 98.5 6.1E-06 2.1E-10 72.1 18.3 203 17-220 10-244 (434)
174 2dba_A Smooth muscle cell asso 98.5 3.9E-06 1.3E-10 60.9 14.3 101 43-146 25-129 (148)
175 2xev_A YBGF; tetratricopeptide 98.5 6.2E-06 2.1E-10 58.3 14.2 97 13-111 4-106 (129)
176 4b4t_Q 26S proteasome regulato 98.5 1.1E-05 3.9E-10 70.4 18.8 165 54-219 12-202 (434)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.7E-06 5.7E-11 76.1 12.0 130 11-143 268-413 (457)
178 2xev_A YBGF; tetratricopeptide 98.4 7.5E-06 2.6E-10 57.8 13.2 92 233-326 8-105 (129)
179 3ro3_A PINS homolog, G-protein 98.4 1.9E-06 6.3E-11 63.7 10.0 137 48-185 11-157 (164)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 7.4E-06 2.5E-10 72.0 15.2 151 25-184 248-413 (457)
181 3k9i_A BH0479 protein; putativ 98.4 9.4E-07 3.2E-11 61.5 7.6 87 23-110 2-90 (117)
182 1wao_1 Serine/threonine protei 98.4 2E-06 6.7E-11 76.0 11.0 121 198-321 12-134 (477)
183 3rkv_A Putative peptidylprolyl 98.4 5.3E-06 1.8E-10 61.5 11.6 99 11-110 11-126 (162)
184 1ihg_A Cyclophilin 40; ppiase 98.4 3.6E-06 1.2E-10 71.6 11.8 122 13-137 225-362 (370)
185 3ro3_A PINS homolog, G-protein 98.3 6.5E-06 2.2E-10 60.7 11.4 139 81-220 9-157 (164)
186 3k9i_A BH0479 protein; putativ 98.3 1.3E-06 4.4E-11 60.8 7.0 88 58-146 2-91 (117)
187 1ihg_A Cyclophilin 40; ppiase 98.3 9.2E-06 3.1E-10 69.1 13.2 124 47-178 224-362 (370)
188 1dce_A Protein (RAB geranylger 98.3 8.1E-05 2.8E-09 67.0 19.9 175 23-208 40-242 (567)
189 3rkv_A Putative peptidylprolyl 98.3 2.1E-05 7.1E-10 58.2 13.5 100 46-146 11-127 (162)
190 2l6j_A TPR repeat-containing p 98.2 8.2E-06 2.8E-10 55.8 9.0 98 297-397 4-108 (111)
191 2if4_A ATFKBP42; FKBP-like, al 98.2 6.6E-06 2.2E-10 69.2 10.0 147 47-220 180-327 (338)
192 2if4_A ATFKBP42; FKBP-like, al 98.2 4.5E-06 1.5E-10 70.2 9.0 132 11-146 179-329 (338)
193 2hr2_A Hypothetical protein; a 98.2 2.6E-05 8.7E-10 56.4 11.2 96 13-109 13-130 (159)
194 1dce_A Protein (RAB geranylger 98.2 0.00017 5.9E-09 64.9 18.9 177 58-245 40-244 (567)
195 2hr2_A Hypothetical protein; a 98.2 4E-05 1.4E-09 55.4 12.0 100 46-146 11-132 (159)
196 1klx_A Cysteine rich protein B 98.1 9.8E-05 3.4E-09 52.8 13.0 112 24-146 8-127 (138)
197 1klx_A Cysteine rich protein B 98.1 0.00014 4.9E-09 51.9 13.3 109 207-326 10-126 (138)
198 3n71_A Histone lysine methyltr 98.1 2.5E-05 8.4E-10 68.7 10.8 125 236-360 318-463 (490)
199 2kat_A Uncharacterized protein 98.1 4.9E-05 1.7E-09 52.4 10.5 81 244-326 2-82 (115)
200 1na3_A Designed protein CTPR2; 98.1 3.3E-05 1.1E-09 50.5 9.1 80 10-91 8-87 (91)
201 3n71_A Histone lysine methyltr 98.1 1.8E-05 6.3E-10 69.5 9.9 125 20-144 318-463 (490)
202 2l6j_A TPR repeat-containing p 98.0 6.6E-06 2.2E-10 56.3 4.8 58 266-324 8-65 (111)
203 1zu2_A Mitochondrial import re 98.0 3.4E-05 1.2E-09 55.6 8.3 100 22-125 13-133 (158)
204 2kat_A Uncharacterized protein 98.0 0.00011 3.7E-09 50.6 10.5 80 29-110 3-82 (115)
205 3ma5_A Tetratricopeptide repea 98.0 3.9E-05 1.3E-09 51.4 7.8 68 7-75 3-70 (100)
206 1zu2_A Mitochondrial import re 97.9 4.5E-05 1.5E-09 55.0 7.7 70 239-310 14-93 (158)
207 1na3_A Designed protein CTPR2; 97.9 0.00018 6E-09 46.8 10.1 63 47-110 10-72 (91)
208 3ma5_A Tetratricopeptide repea 97.7 0.00018 6.2E-09 48.0 8.2 63 45-108 6-68 (100)
209 3ly7_A Transcriptional activat 97.7 0.0017 5.8E-08 54.0 15.0 137 7-146 190-340 (372)
210 3ly7_A Transcriptional activat 97.4 0.0083 2.8E-07 49.9 14.6 142 189-336 191-347 (372)
211 3bee_A Putative YFRE protein; 97.3 0.0014 4.9E-08 42.7 8.2 68 8-76 3-73 (93)
212 2kc7_A BFR218_protein; tetratr 97.3 0.0015 5E-08 43.2 8.0 55 236-291 9-64 (99)
213 3bee_A Putative YFRE protein; 97.2 0.0025 8.6E-08 41.6 8.4 66 260-326 4-72 (93)
214 3qww_A SET and MYND domain-con 97.2 0.0033 1.1E-07 54.3 11.3 61 48-108 342-409 (433)
215 2kc7_A BFR218_protein; tetratr 97.2 0.0026 9E-08 42.0 8.6 58 17-75 6-64 (99)
216 1pc2_A Mitochondria fission pr 97.2 0.0079 2.7E-07 42.9 11.2 88 26-116 13-104 (152)
217 3qwp_A SET and MYND domain-con 97.2 0.002 7E-08 55.7 9.6 89 20-108 296-398 (429)
218 3qwp_A SET and MYND domain-con 97.1 0.0029 9.9E-08 54.8 9.7 98 123-220 294-399 (429)
219 1pc2_A Mitochondria fission pr 97.1 0.0084 2.9E-07 42.7 10.3 65 295-360 30-99 (152)
220 3qww_A SET and MYND domain-con 97.1 0.0015 5.1E-08 56.4 7.9 93 128-220 310-410 (433)
221 4h7y_A Dual specificity protei 97.0 0.011 3.8E-07 41.6 10.1 115 7-124 9-136 (161)
222 2v5f_A Prolyl 4-hydroxylase su 96.7 0.029 9.9E-07 37.4 10.5 62 49-110 8-75 (104)
223 3mkq_B Coatomer subunit alpha; 96.7 0.076 2.6E-06 38.9 13.1 101 55-182 14-114 (177)
224 3mkq_A Coatomer beta'-subunit; 96.7 0.045 1.5E-06 51.9 15.3 45 92-142 663-707 (814)
225 2v5f_A Prolyl 4-hydroxylase su 96.6 0.017 5.7E-07 38.6 8.8 67 10-76 4-76 (104)
226 3mkq_A Coatomer beta'-subunit; 96.6 0.073 2.5E-06 50.5 15.9 102 55-183 661-762 (814)
227 3u64_A Protein TP_0956; tetrat 96.2 0.072 2.5E-06 42.6 11.2 84 279-364 180-272 (301)
228 3mkq_B Coatomer subunit alpha; 96.2 0.22 7.6E-06 36.5 16.7 131 17-183 11-141 (177)
229 1nzn_A CGI-135 protein, fissio 96.2 0.069 2.4E-06 36.6 9.6 96 17-115 7-106 (126)
230 4ady_A RPN2, 26S proteasome re 96.2 0.87 3E-05 43.2 22.9 312 56-383 384-722 (963)
231 3lvg_A Clathrin heavy chain 1; 96.1 1.1E-06 3.8E-11 74.2 -17.1 265 10-317 53-324 (624)
232 3u64_A Protein TP_0956; tetrat 96.1 0.091 3.1E-06 42.0 11.0 85 27-113 179-272 (301)
233 1nzn_A CGI-135 protein, fissio 96.0 0.098 3.3E-06 35.8 9.4 80 279-360 18-102 (126)
234 4h7y_A Dual specificity protei 95.9 0.28 9.7E-06 34.6 12.2 51 241-292 74-124 (161)
235 1wy6_A Hypothetical protein ST 95.2 0.46 1.6E-05 32.8 15.0 65 263-328 92-156 (172)
236 4gns_B Protein CSD3, chitin bi 95.2 0.32 1.1E-05 45.0 12.7 126 15-143 252-398 (754)
237 4ady_A RPN2, 26S proteasome re 95.1 2.4 8.3E-05 40.3 23.3 265 21-300 384-664 (963)
238 1wy6_A Hypothetical protein ST 94.8 0.62 2.1E-05 32.2 15.7 64 118-188 93-156 (172)
239 3lvg_A Clathrin heavy chain 1; 94.7 1.2E-06 3.9E-11 74.2 -21.8 204 156-380 53-276 (624)
240 2ff4_A Probable regulatory pro 94.1 0.3 1E-05 41.5 9.4 71 265-336 174-249 (388)
241 4b4t_P 26S proteasome regulato 94.0 1.8 6.2E-05 37.6 14.3 172 10-185 55-246 (445)
242 1qsa_A Protein (soluble lytic 93.8 3.8 0.00013 37.2 26.6 309 21-360 16-347 (618)
243 4b4t_P 26S proteasome regulato 93.7 3.2 0.00011 36.0 19.1 195 24-220 29-246 (445)
244 2ff4_A Probable regulatory pro 93.7 0.43 1.5E-05 40.6 9.6 109 10-119 111-248 (388)
245 4fhn_B Nucleoporin NUP120; pro 93.6 3.2 0.00011 41.1 16.7 150 86-242 817-986 (1139)
246 4fhn_B Nucleoporin NUP120; pro 93.5 3.3 0.00011 41.0 16.6 145 15-173 816-987 (1139)
247 4gns_B Protein CSD3, chitin bi 93.4 2.1 7E-05 39.8 13.9 127 50-183 252-397 (754)
248 3o48_A Mitochondria fission 1 92.5 1.8 6E-05 29.9 10.2 66 295-360 38-106 (134)
249 1v54_E Cytochrome C oxidase po 92.4 1.5 5E-05 28.5 8.8 48 27-74 26-73 (109)
250 3o48_A Mitochondria fission 1 91.3 2.5 8.6E-05 29.1 10.4 74 41-116 35-111 (134)
251 3ffl_A Anaphase-promoting comp 90.8 1.9 6.5E-05 31.1 8.3 65 10-74 19-91 (167)
252 2y69_E Cytochrome C oxidase su 90.5 3.1 0.0001 28.7 8.6 65 61-126 68-132 (152)
253 3ffl_A Anaphase-promoting comp 90.1 4.1 0.00014 29.4 11.0 26 301-326 126-151 (167)
254 1v54_E Cytochrome C oxidase po 89.8 2.8 9.7E-05 27.2 9.5 63 61-124 25-87 (109)
255 1y8m_A FIS1; mitochondria, unk 89.8 3.8 0.00013 28.6 11.9 66 295-360 37-105 (144)
256 4b4t_R RPN7, 26S proteasome re 88.7 7.7 0.00026 33.5 12.3 120 27-146 110-238 (429)
257 2wpv_A GET4, UPF0363 protein Y 88.2 9.4 0.00032 31.1 15.3 18 342-359 198-215 (312)
258 1y8m_A FIS1; mitochondria, unk 88.1 5.2 0.00018 28.0 12.2 72 43-116 36-110 (144)
259 2y69_E Cytochrome C oxidase su 87.2 5.7 0.00019 27.4 9.5 51 96-146 68-118 (152)
260 4b4t_R RPN7, 26S proteasome re 86.9 12 0.00041 32.2 12.4 83 62-144 110-196 (429)
261 1zbp_A Hypothetical protein VP 86.7 6.5 0.00022 31.0 9.4 56 19-75 5-60 (273)
262 2wpv_A GET4, UPF0363 protein Y 85.8 13 0.00044 30.3 16.1 173 48-254 35-215 (312)
263 2p58_C Putative type III secre 85.6 5.5 0.00019 25.8 7.2 78 26-111 22-99 (116)
264 2uwj_G Type III export protein 84.7 5.2 0.00018 25.8 6.5 78 26-111 21-98 (115)
265 3lpz_A GET4 (YOR164C homolog); 82.9 18 0.00063 29.7 18.3 173 48-254 37-214 (336)
266 3esl_A Checkpoint serine/threo 79.4 17 0.0006 27.2 9.8 73 153-225 73-148 (202)
267 2uwj_G Type III export protein 78.9 11 0.00037 24.4 6.9 79 60-146 20-98 (115)
268 2p58_C Putative type III secre 78.1 11 0.00039 24.3 7.7 79 60-146 21-99 (116)
269 3esl_A Checkpoint serine/threo 76.0 22 0.00076 26.6 9.1 57 275-331 92-149 (202)
270 1wdy_A 2-5A-dependent ribonucl 74.1 28 0.00097 27.3 9.9 47 275-321 192-240 (285)
271 3eiq_C Programmed cell death p 72.9 40 0.0014 28.1 13.0 66 264-330 219-286 (358)
272 1wdy_A 2-5A-dependent ribonucl 71.4 35 0.0012 26.7 10.7 23 238-260 190-212 (285)
273 2nsz_A Programmed cell death p 70.1 24 0.00081 24.2 7.3 65 264-329 9-75 (129)
274 2zu6_B Programmed cell death p 69.5 23 0.00079 28.8 8.0 64 160-224 169-234 (307)
275 3jxi_A Vanilloid receptor-rela 68.8 9.6 0.00033 29.8 5.8 119 17-140 8-161 (260)
276 2r9g_A AAA ATPase, central reg 68.0 35 0.0012 25.5 8.5 17 171-187 28-44 (204)
277 3txn_A 26S proteasome regulato 67.5 57 0.0019 27.7 22.1 166 81-253 19-207 (394)
278 2d2s_A Exocyst complex compone 67.5 41 0.0014 26.0 9.0 22 17-38 24-45 (235)
279 2ion_A PDCD4, programmed cell 67.1 29 0.001 24.6 7.3 66 264-330 11-78 (152)
280 4b4t_S RPN3, 26S proteasome re 66.8 19 0.00063 31.8 7.3 65 46-110 231-299 (523)
281 2r9g_A AAA ATPase, central reg 66.6 38 0.0013 25.3 10.6 83 203-286 25-112 (204)
282 3hra_A Ankyrin repeat family p 66.3 34 0.0012 25.1 8.3 15 212-226 158-172 (201)
283 1qsa_A Protein (soluble lytic 63.9 87 0.003 28.5 31.7 116 171-290 228-347 (618)
284 3bge_A Predicted ATPase; struc 63.9 43 0.0015 25.0 9.0 32 170-201 20-51 (201)
285 2d2s_A Exocyst complex compone 63.7 49 0.0017 25.6 9.3 89 52-143 24-118 (235)
286 4a1g_A Mitotic checkpoint seri 63.6 37 0.0013 24.1 9.0 47 176-222 84-131 (152)
287 4a1g_A Mitotic checkpoint seri 63.4 37 0.0013 24.1 8.9 50 281-330 84-134 (152)
288 3bge_A Predicted ATPase; struc 63.2 44 0.0015 24.9 8.3 55 203-257 18-77 (201)
289 3txn_A 26S proteasome regulato 61.2 76 0.0026 26.9 22.5 292 46-362 19-344 (394)
290 3kea_A K1L; tropism, ANK repea 60.7 61 0.0021 25.7 9.2 8 239-246 170-177 (285)
291 3lpz_A GET4 (YOR164C homolog); 60.2 71 0.0024 26.3 22.7 132 119-275 38-180 (336)
292 2zu6_B Programmed cell death p 59.3 70 0.0024 26.0 9.0 25 160-184 6-30 (307)
293 3ctd_A Putative ATPase, AAA fa 59.0 55 0.0019 24.6 8.4 20 206-225 49-68 (213)
294 3ctd_A Putative ATPase, AAA fa 58.8 56 0.0019 24.6 10.1 71 156-226 31-109 (213)
295 1k1a_A B-cell lymphoma 3-encod 57.4 55 0.0019 24.8 8.2 21 21-41 16-36 (241)
296 2wvi_A Mitotic checkpoint seri 56.4 53 0.0018 23.7 8.6 86 30-118 42-133 (164)
297 1zbp_A Hypothetical protein VP 56.4 73 0.0025 25.2 15.2 119 54-186 5-129 (273)
298 3eu9_A Huntingtin-interacting 55.1 65 0.0022 24.3 9.7 42 21-66 16-59 (240)
299 3eu9_A Huntingtin-interacting 54.6 66 0.0023 24.2 9.9 17 123-139 46-62 (240)
300 2wvi_A Mitotic checkpoint seri 54.5 58 0.002 23.5 9.2 50 176-225 79-129 (164)
301 4b4t_S RPN3, 26S proteasome re 53.7 43 0.0015 29.5 7.2 64 80-146 230-300 (523)
302 1bpo_A Protein (clathrin); cla 52.2 1.2E+02 0.004 26.4 10.6 113 24-141 342-454 (494)
303 3eiq_C Programmed cell death p 51.8 1E+02 0.0036 25.6 12.7 64 160-224 220-285 (358)
304 4gq2_M Nucleoporin NUP120; bet 51.8 1.3E+02 0.0045 29.1 11.1 108 268-381 816-950 (950)
305 3bu8_A Telomeric repeat-bindin 51.8 76 0.0026 24.0 11.3 21 89-109 122-142 (235)
306 3hra_A Ankyrin repeat family p 51.3 65 0.0022 23.5 7.5 154 20-191 11-172 (201)
307 4ets_A Ferric uptake regulatio 49.5 56 0.0019 23.4 6.4 56 39-95 26-83 (162)
308 1k1a_A B-cell lymphoma 3-encod 49.2 83 0.0028 23.7 11.3 85 53-141 13-101 (241)
309 4aez_C MAD3, mitotic spindle c 47.6 92 0.0031 23.8 8.3 86 29-117 95-186 (223)
310 3bu8_A Telomeric repeat-bindin 46.5 94 0.0032 23.6 7.7 49 27-75 88-143 (235)
311 3kea_A K1L; tropism, ANK repea 46.2 1.1E+02 0.0037 24.2 12.4 188 53-264 35-225 (285)
312 3mwm_A ZUR, putative metal upt 45.6 48 0.0016 23.0 5.4 44 17-60 19-62 (139)
313 4aez_C MAD3, mitotic spindle c 45.4 1E+02 0.0034 23.6 7.9 52 279-330 131-183 (223)
314 2f6m_A Suppressor protein STP2 45.4 42 0.0014 19.7 4.0 44 84-128 5-48 (65)
315 3ltm_A Alpha-REP4; protein eng 44.7 93 0.0032 23.0 18.3 80 44-131 31-110 (211)
316 2xig_A Ferric uptake regulatio 43.8 82 0.0028 22.1 6.9 47 196-242 30-76 (150)
317 2o03_A Probable zinc uptake re 43.3 54 0.0018 22.4 5.3 44 17-60 16-59 (131)
318 2qx5_A Nucleoporin NIC96; mRNA 43.3 2E+02 0.0068 26.5 16.7 44 12-57 154-197 (661)
319 2ion_A PDCD4, programmed cell 42.1 90 0.0031 22.1 7.8 66 13-79 11-78 (152)
320 4ets_A Ferric uptake regulatio 41.7 59 0.002 23.3 5.5 47 196-242 36-84 (162)
321 3eyy_A Putative iron uptake re 41.6 88 0.003 21.8 6.4 57 37-95 10-66 (145)
322 2keb_A DNA polymerase subunit 41.0 70 0.0024 20.6 5.8 57 280-338 27-88 (101)
323 2ijq_A Hypothetical protein; s 40.5 1E+02 0.0034 22.2 7.7 60 160-220 36-103 (161)
324 2xig_A Ferric uptake regulatio 40.5 94 0.0032 21.8 8.3 24 53-76 33-56 (150)
325 1mzb_A Ferric uptake regulatio 39.7 70 0.0024 22.0 5.5 61 36-97 8-69 (136)
326 1mzb_A Ferric uptake regulatio 39.4 91 0.0031 21.4 6.6 61 72-133 9-70 (136)
327 2b7e_A PRE-mRNA processing pro 39.4 22 0.00077 20.3 2.3 29 28-56 3-31 (59)
328 3pvs_A Replication-associated 39.4 1.9E+02 0.0064 25.0 13.4 56 204-259 267-327 (447)
329 2fe3_A Peroxide operon regulat 39.1 96 0.0033 21.6 7.7 58 37-95 13-70 (145)
330 3kae_A CDC27, possible protein 38.5 1.1E+02 0.0039 22.3 7.4 80 22-107 44-140 (242)
331 2qfz_A TBC1 domain family memb 38.4 1.6E+02 0.0055 24.2 8.4 77 249-325 231-314 (345)
332 2w57_A Ferric uptake regulatio 38.0 91 0.0031 21.9 5.9 46 198-243 22-68 (150)
333 2rg8_A Programmed cell death p 37.6 1.1E+02 0.0039 22.0 7.1 60 264-325 12-73 (165)
334 3ltm_A Alpha-REP4; protein eng 37.2 1.2E+02 0.0042 22.3 17.5 148 15-185 37-184 (211)
335 2etb_A Transient receptor pote 37.1 1.4E+02 0.0048 22.9 9.1 118 17-140 5-157 (256)
336 2o03_A Probable zinc uptake re 37.0 82 0.0028 21.5 5.4 44 88-131 17-60 (131)
337 1ug3_A EIF4GI, eukaryotic prot 36.7 1.8E+02 0.0061 24.0 8.9 24 84-107 14-37 (339)
338 2pnn_A Transient receptor pote 36.6 93 0.0032 24.2 6.6 126 9-140 9-169 (273)
339 2dod_A Transcription elongatio 36.5 70 0.0024 19.8 4.4 33 348-381 16-49 (82)
340 3pvs_A Replication-associated 36.4 2.1E+02 0.0072 24.7 13.8 47 173-221 167-221 (447)
341 2yru_A Steroid receptor RNA ac 36.3 64 0.0022 21.7 4.5 20 55-74 70-89 (118)
342 2nsz_A Programmed cell death p 35.5 1E+02 0.0036 21.0 9.1 66 13-79 9-76 (129)
343 2keb_A DNA polymerase subunit 35.5 88 0.003 20.1 7.0 34 27-60 25-58 (101)
344 2ko4_A Mediator of RNA polymer 35.5 67 0.0023 19.6 3.9 33 5-37 30-62 (81)
345 3ltj_A Alpharep-4; protein eng 35.1 1.3E+02 0.0045 22.0 17.7 171 44-240 26-196 (201)
346 2w57_A Ferric uptake regulatio 34.9 79 0.0027 22.2 5.2 62 35-97 6-68 (150)
347 1bd8_A P19INK4D CDK4/6 inhibit 34.6 1.1E+02 0.0036 21.1 6.1 12 93-104 11-22 (156)
348 3mwm_A ZUR, putative metal upt 33.4 80 0.0027 21.8 4.9 45 87-131 19-63 (139)
349 3c1d_A Protein ORAA, regulator 33.1 1.3E+02 0.0045 21.4 11.6 49 279-329 47-95 (159)
350 2fu4_A Ferric uptake regulatio 32.5 85 0.0029 19.0 7.0 57 37-94 8-65 (83)
351 3eyy_A Putative iron uptake re 32.4 82 0.0028 22.0 4.9 48 15-63 22-69 (145)
352 3jxi_A Vanilloid receptor-rela 32.4 63 0.0021 25.0 4.9 87 53-140 9-114 (260)
353 3kae_A CDC27, possible protein 31.8 1.5E+02 0.0051 21.7 7.1 28 262-289 114-141 (242)
354 3aji_A 26S proteasome non-ATPa 28.8 1.8E+02 0.0062 21.6 8.9 181 15-216 7-193 (231)
355 4gq2_M Nucleoporin NUP120; bet 28.6 4.2E+02 0.014 25.8 11.8 52 87-143 816-867 (950)
356 1ug3_A EIF4GI, eukaryotic prot 28.6 1.2E+02 0.0042 24.9 6.1 26 264-289 13-38 (339)
357 4fjo_A DNA repair protein REV1 28.1 45 0.0015 21.5 2.6 30 45-74 32-61 (97)
358 4fke_A Aminopeptidase N; zinc 27.8 4.2E+02 0.014 25.6 17.1 91 196-291 690-787 (909)
359 2rg8_A Programmed cell death p 27.6 85 0.0029 22.6 4.3 26 13-38 12-37 (165)
360 2yru_A Steroid receptor RNA ac 27.5 1.2E+02 0.0041 20.4 4.7 42 179-220 48-89 (118)
361 3ygs_P Procaspase 9; apoptosis 27.0 1.3E+02 0.0043 19.2 6.4 39 346-388 51-89 (97)
362 1bd8_A P19INK4D CDK4/6 inhibit 26.7 85 0.0029 21.6 4.4 16 56-71 9-24 (156)
363 3lxu_X Tripeptidyl-peptidase 2 26.3 5.2E+02 0.018 26.3 10.5 34 204-239 1296-1329(1354)
364 1gp8_A Protein (scaffolding pr 26.1 41 0.0014 17.1 1.6 20 373-392 16-35 (40)
365 2p1h_A APAF-1, apoptotic prote 26.1 1.3E+02 0.0043 18.9 5.7 41 345-389 49-89 (94)
366 1wgl_A TOLL-interacting protei 25.3 80 0.0027 18.0 3.1 13 276-288 37-49 (59)
367 3e3v_A Regulatory protein RECX 24.9 2E+02 0.0069 20.9 9.3 51 243-294 49-99 (177)
368 3qil_A Clathrin heavy chain 1; 24.5 87 0.003 21.2 3.5 51 49-102 35-85 (125)
369 2ijq_A Hypothetical protein; s 24.1 2E+02 0.0069 20.6 8.5 50 60-109 46-103 (161)
370 2p22_A Suppressor protein STP2 23.8 1.1E+02 0.0038 22.2 4.2 54 79-133 109-162 (174)
371 3ljn_A Hypothetical protein; a 23.8 2.9E+02 0.01 22.5 7.8 19 91-109 91-109 (364)
372 3l6a_A Eukaryotic translation 23.7 3.2E+02 0.011 22.8 15.0 209 15-239 16-245 (364)
373 2rfa_A Transient receptor pote 22.7 2.4E+02 0.0082 21.0 8.6 21 202-222 161-181 (232)
374 3qil_A Clathrin heavy chain 1; 22.3 86 0.0029 21.2 3.1 46 231-279 36-81 (125)
375 1ixm_A SPO0B, protein (sporula 21.9 1.2E+02 0.0041 22.5 4.3 47 277-325 14-60 (192)
376 2fe3_A Peroxide operon regulat 21.9 2E+02 0.007 19.9 8.2 19 239-257 33-51 (145)
377 3bqo_A Telomeric repeat-bindin 21.8 1.3E+02 0.0045 22.5 4.2 20 89-108 125-144 (211)
378 2p22_A Suppressor protein STP2 21.1 1.1E+02 0.0037 22.3 3.7 53 44-97 109-161 (174)
379 3bqo_A Telomeric repeat-bindin 20.9 2.1E+02 0.0071 21.4 5.1 25 122-146 123-147 (211)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-36 Score=277.14 Aligned_cols=371 Identities=12% Similarity=0.060 Sum_probs=310.7
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHh-C--------------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNS-I--------------GLFPDLYTYSILINCFCKMGQVSLGFVIFGRI 72 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--------------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 72 (400)
|+++.+++.++..|.+.|++++|+++|+++.. . |.+++..+|+.++.+|.+.|++++|.++|+++
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56777888888888888888888888874321 1 22334778888888888888888888888888
Q ss_pred HhccCCccHHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015811 73 LRSCFAPNVVTFTSL--------------------------------------IKGLCAESRIVEAAALFTKLKAFGCEP 114 (400)
Q Consensus 73 ~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 114 (400)
.+.++. +...+..+ +..|.+.|++++|.++|+++.+. ++
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 776422 23332222 44555677888888888887765 57
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh
Q 015811 115 NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVT 194 (400)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 194 (400)
+..+++.++.+|.+.|++++|+++|+++...+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..+
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 88899999999999999999999999998765 5578889999999999999999999999998653 457889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHc
Q 015811 195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCL 274 (400)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (400)
+..++..|.+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 9999999999999999999999998864 4467789999999999999999999999998875 5678899999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC----CCCcC--HHHHHHHHHHHhccchH
Q 015811 275 TGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK----GIKPT--VVTYNTLFHGLFEIRQA 348 (400)
Q Consensus 275 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~ 348 (400)
.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++
T Consensus 454 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 999999999999998875 568899999999999999999999999999875 66777 78999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 349 ERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
++|.+.++++.+.+ +.+..+|..+..+|...|++++|...++..
T Consensus 533 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 533 DAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998764 347889999999999999999998877654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-35 Score=270.57 Aligned_cols=376 Identities=10% Similarity=-0.018 Sum_probs=321.4
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
+++..|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57788999999999999999999999999864 578899999999999999999999999988654 67888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccc---
Q 015811 89 KGLCAESRIVEAAALFTKLKAF---------------GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIG--- 150 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 150 (400)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|+++|+++...++...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 1223578899999999999999999999999876543200
Q ss_pred -------------------------------------------------------------ccccCChhhHHHHHHHHHh
Q 015811 151 -------------------------------------------------------------VVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 151 -------------------------------------------------------------~~~~~~~~~~~~l~~~~~~ 169 (400)
...+++..+++.++..+.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 0013677888889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHH
Q 015811 170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRL 249 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 249 (400)
.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998765 3377888999999999999999999999998654 55778889999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCC
Q 015811 250 LDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIK 329 (400)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 329 (400)
|+.+.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.+ +.+..+|..++.+|.+.|++++|..+|+++.+.. +
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 99998764 4567899999999999999999999999998875 5678899999999999999999999999998764 3
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHhhC----CCCCC--hhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 330 PTVVTYNTLFHGLFEIRQAERALKLFVEMQGN----DVAAD--TCTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|...++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 37889999999999999999999999999865 66777 678999999999999999998887654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.4e-30 Score=222.41 Aligned_cols=361 Identities=13% Similarity=0.017 Sum_probs=308.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR 96 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (400)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4567788999999999999988765 4567788888888999999999999999988864 4578889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHH
Q 015811 97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKA 176 (400)
Q Consensus 97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 176 (400)
+++|...|+++.+.. +.+..+|..+..++...|++++|++.|+++.... +.+...+..+...+...|++++|
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHH
Confidence 999999999998874 4456678999999999999999999999998754 44566778888889999999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811 177 KELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC 256 (400)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (400)
.+.|+++.+.. +.+..+|..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+.+..+.
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998764 3356888999999999999999999999998874 345677888889999999999999999998876
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHH
Q 015811 257 DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYN 336 (400)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 336 (400)
. +.+..++..+...+...|++++|...++++.+.+ +.+..+|..+..++.+.|++++|...++++.+.. +.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 5 4467888899999999999999999999998875 4567889999999999999999999999998763 45788899
Q ss_pred HHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 337 TLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
.+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...++..
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999998742 335678889999999999999998877654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.4e-33 Score=243.43 Aligned_cols=185 Identities=15% Similarity=0.166 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---------chhHHHHHHHHHhCCCCCcHHHH
Q 015811 195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK---------MDNASRLLDLMVQCDVRPNAFTY 265 (400)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 265 (400)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.+. ++.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444455555555555555555555555555555555555555544332 34455555555555555555555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhcc
Q 015811 266 NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEI 345 (400)
Q Consensus 266 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 345 (400)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred chHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 015811 346 RQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV 379 (400)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (400)
|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555544
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.8e-29 Score=219.10 Aligned_cols=358 Identities=15% Similarity=0.062 Sum_probs=311.7
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.|.+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...|..
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 106 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYIN 106 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHH
Confidence 45677888889999999999999999999988765 6688999999999999999999999999999874 336678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHH
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDG 166 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (400)
+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.... +.+..+|..+..+
T Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 107 LAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-------PNFAVAWSNLGCV 178 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 9999999999999999999999874 4455677788889999999999999999998864 5567899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811 167 LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA 246 (400)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 246 (400)
+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+..++..+..++...|++++|
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999874 3356788899999999999999999999998864 34577888999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
...++.+.+.+ +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 257 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 257 IDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999875 4567889999999999999999999999999875 678899999999999999999999999999876
Q ss_pred CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhhcCC
Q 015811 327 GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAA-DTCTYRTFIDGLCVRP 381 (400)
Q Consensus 327 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 381 (400)
. +.+..++..+...+.+.|++++|...|+++.+. .| +...+..+...+...|
T Consensus 335 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 335 F-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 3 336788999999999999999999999999874 34 4455666666555444
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.3e-32 Score=240.98 Aligned_cols=207 Identities=14% Similarity=0.135 Sum_probs=182.7
Q ss_pred HHHHHHHHHHcCCCcccccccCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-----
Q 015811 134 VALNLFKEMTNGNGEIGVVFKPN-TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND----- 207 (400)
Q Consensus 134 ~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 207 (400)
.+..+.+++.+.+ .... ...++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~------~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~ 81 (501)
T 4g26_A 8 PSENLSRKAKKKA------IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS 81 (501)
T ss_dssp ----------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS
T ss_pred hHHHHHHHHHHhc------ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh
Confidence 3455556666555 3333 346888999999999999999999999999999999999999999987654
Q ss_pred ----HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHH
Q 015811 208 ----WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKE 283 (400)
Q Consensus 208 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 283 (400)
.+.|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccc
Q 015811 284 LFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIR 346 (400)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 346 (400)
+|++|.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|...+
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999887643
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=3e-26 Score=202.85 Aligned_cols=366 Identities=12% Similarity=0.056 Sum_probs=296.2
Q ss_pred CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
..|.++.+|..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+..++.
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 98 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARL 98 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 456788899999999999999999999999998764 5678999999999999999999999999999875 34688899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHH------------HHHHHhcCChHHHHHHHHHHHcCCCccc
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNV---ITYNTL------------INGLCRTGHTIVALNLFKEMTNGNGEIG 150 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (400)
.+..++...|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|+..++++....
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---- 173 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---- 173 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999864 3333 555555 444889999999999999998764
Q ss_pred ccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 015811 151 VVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSS 230 (400)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 230 (400)
+.+...+..+..++...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.... +.+...+
T Consensus 174 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 248 (450)
T 2y4t_A 174 ---VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCF 248 (450)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ---CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHH
Confidence 5678889999999999999999999999998763 3467899999999999999999999999998763 2233444
Q ss_pred HHH------------HHHHHhcCCchhHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 015811 231 NVI------------MNELCKNGKMDNASRLLDLMVQCDVRPN-----AFTYNTLMDGFCLTGKINRVKELFVSMESMGC 293 (400)
Q Consensus 231 ~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 293 (400)
..+ ...+...|++++|...++.+.+.. |+ ...+..+...+.+.|++++|...++++.+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~- 325 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME- 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 444 788999999999999999998854 33 3478888999999999999999999998875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc-CHHHHHHHHHH------------Hhccc-----hHHHHHHHH
Q 015811 294 KHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP-TVVTYNTLFHG------------LFEIR-----QAERALKLF 355 (400)
Q Consensus 294 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~------------~~~~~-----~~~~a~~~~ 355 (400)
+.+...|..+..+|...|++++|...++++.+. .| +...+..+..+ |...| +.+++.+.+
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y 403 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHH
Confidence 557899999999999999999999999999876 44 45555555522 33333 556778888
Q ss_pred HH-HhhCC--CCCC-------hhhHHHHHHHhhcCCcchhhHh
Q 015811 356 VE-MQGND--VAAD-------TCTYRTFIDGLCVRPQVRFTYA 388 (400)
Q Consensus 356 ~~-~~~~~--~~~~-------~~~~~~l~~~~~~~g~~~~a~~ 388 (400)
++ ..+.. ..|+ ...+..+..+|...|+.+....
T Consensus 404 ~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 404 RKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 76 33321 1122 2367788888888888776543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-26 Score=206.25 Aligned_cols=373 Identities=13% Similarity=-0.019 Sum_probs=308.9
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG 90 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (400)
+..|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|.+.++++++.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567888899999999999999999999875 799999999999999999999999999999875 3477889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-------------------------------------------------------
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPN------------------------------------------------------- 115 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------------------------------- 115 (400)
+...|++++|...|+++.+.+ +++
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998765 211
Q ss_pred ------------------------hhhHHHHHHHHHh---cCChHHHHHHHHHHHc-----C--CCcccccccCChhhHH
Q 015811 116 ------------------------VITYNTLINGLCR---TGHTIVALNLFKEMTN-----G--NGEIGVVFKPNTVTYS 161 (400)
Q Consensus 116 ------------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~~~~~~~ 161 (400)
...+......+.. .|++++|+..++++.. . .+......+.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 2222223333333 7999999999999887 3 1100000023456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG 241 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (400)
.+..++...|++++|...++.+.+... +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 889999999999999999999998753 38888899999999999999999999998874 446778889999999999
Q ss_pred CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811 242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYN 321 (400)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 321 (400)
++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999875 4567788999999999999999999999998875 4567888999999999999999999999
Q ss_pred hhhhCCCC-cC----HHHHHHHHHHHhc---cchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 322 ELPFKGIK-PT----VVTYNTLFHGLFE---IRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 322 ~~~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+...|...|++++|...++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 98764211 11 3478888999999 999999999999998753 335677889999999999999998877643
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.4e-24 Score=192.19 Aligned_cols=327 Identities=11% Similarity=-0.001 Sum_probs=267.3
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 31 LSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 31 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
...+.++.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+.
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33344444332 4567889999999999999999999999999864 447889999999999999999999999999988
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh---hhHHHH------------HHHHHhcCChHH
Q 015811 111 GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT---VTYSII------------IDGLCKEGFVDK 175 (400)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~ 175 (400)
+ +.+..++..+..++...|++++|...|+++.... +.+. ..+..+ ...+...|++++
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 6 5567889999999999999999999999999865 3344 555555 445889999999
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811 176 AKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ 255 (400)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (400)
|...|+.+.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...++.+.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 3477889999999999999999999999998764 45678899999999999999999999999987
Q ss_pred CCCCCcHHHHHHH------------HHHHHcCCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 015811 256 CDVRPNAFTYNTL------------MDGFCLTGKINRVKELFVSMESMGCKHD----DFSYNILINGYCKNKEVEEALSL 319 (400)
Q Consensus 256 ~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~ 319 (400)
.. +.+...+..+ +..+...|++++|...++++.+.. +.+ ...+..+..++.+.|++++|...
T Consensus 240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 64 3344555444 788999999999999999998864 223 44788899999999999999999
Q ss_pred HhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC-hhhHHHHH
Q 015811 320 YNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD-TCTYRTFI 374 (400)
Q Consensus 320 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 374 (400)
++++.+.. +.+...|..+..+|...|++++|...++++.+. .|+ ...+..+.
T Consensus 318 ~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 318 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 99988763 336889999999999999999999999999874 454 44455554
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1e-23 Score=190.93 Aligned_cols=365 Identities=9% Similarity=0.009 Sum_probs=293.1
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG 90 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (400)
...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.++++++.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4678888999999999999999999998876 5688999999999999999999999999999875 3478889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChh-----------------------------------------------------
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPNVI----------------------------------------------------- 117 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------------------------------- 117 (400)
+...|++++|...|+.+. . .|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-L--NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-c--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999999996431 1 11110
Q ss_pred ----------------hHHHHHHHHHh--------cCChHHHHHHHHHHHcCCCcccccccCCh-------hhHHHHHHH
Q 015811 118 ----------------TYNTLINGLCR--------TGHTIVALNLFKEMTNGNGEIGVVFKPNT-------VTYSIIIDG 166 (400)
Q Consensus 118 ----------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~ 166 (400)
....+...+.. .|++++|+.+++++.... +.+. .++..+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-------TVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-------CCcchhhHHHHHHHHHHHHH
Confidence 11111111111 247889999999998865 2332 346677788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811 167 LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA 246 (400)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 246 (400)
+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 889999999999999999864 567888899999999999999999999999875 44677899999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999998875 4457788999999999999999999999998875 556778999999999999999999999998764
Q ss_pred C-----CCcCHHHHHHHHHHHhcc----------chHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811 327 G-----IKPTVVTYNTLFHGLFEI----------RQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK 391 (400)
Q Consensus 327 ~-----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 391 (400)
. .......+......+... |++++|...|++..+.. +.+...+..+...|...|++++|...++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1 111223344445667777 99999999999998753 2356788999999999999999988776
Q ss_pred CC
Q 015811 392 GN 393 (400)
Q Consensus 392 ~~ 393 (400)
..
T Consensus 487 ~a 488 (537)
T 3fp2_A 487 DS 488 (537)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.3e-24 Score=190.81 Aligned_cols=345 Identities=10% Similarity=-0.051 Sum_probs=287.4
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc---------
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--------- 79 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 79 (400)
|++.+|..+..++.+.|++++|+..++++.+.+ +.+..++..+..++...|++++|...|+++.+.+...
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 478899999999999999999999999999876 5578899999999999999999999999998765311
Q ss_pred ---------------------------------------------------------------------cHHHHHHHHHH
Q 015811 80 ---------------------------------------------------------------------NVVTFTSLIKG 90 (400)
Q Consensus 80 ---------------------------------------------------------------------~~~~~~~l~~~ 90 (400)
+...+......
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 12233333333
Q ss_pred HHh---cCCHHHHHHHHHHHHH-----cCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811 91 LCA---ESRIVEAAALFTKLKA-----FGC--------EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK 154 (400)
Q Consensus 91 ~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 154 (400)
+.. .|++++|..+|+++.+ ... +.+..++..+...+...|++++|...++++....
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------- 267 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-------- 267 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--------
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------
Confidence 443 8999999999999987 311 2234577888899999999999999999998864
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 015811 155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIM 234 (400)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 234 (400)
|+...+..+..++...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 345 (514)
T 2gw1_A 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLA 345 (514)
T ss_dssp CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHH
Confidence 338888999999999999999999999998764 3467788999999999999999999999999875 44677888899
Q ss_pred HHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHh
Q 015811 235 NELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCK-HD----DFSYNILINGYCK 309 (400)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~ 309 (400)
..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... ++ ...+..+..++..
T Consensus 346 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 346 CLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998864 456778899999999999999999999999765311 11 3388899999999
Q ss_pred ---cCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChh
Q 015811 310 ---NKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTC 368 (400)
Q Consensus 310 ---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 368 (400)
.|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+. .|+..
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred hhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 999999999999998763 336778888999999999999999999999874 44443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=1.6e-22 Score=173.29 Aligned_cols=303 Identities=13% Similarity=0.054 Sum_probs=217.3
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999998865 5578899999999999999999999999999875 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC---CChhhHHHH------------HHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCE---PNVITYNTL------------INGLCRTGHTIVALNLFKEMTNGNGEIGVVFK 154 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 154 (400)
++...|++++|...++++.+.. + .+...+..+ ...+...|++++|+..++++.... +
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~ 151 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-------V 151 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------C
Confidence 9999999999999999998763 2 244444444 467778888888888888887754 4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH---
Q 015811 155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSN--- 231 (400)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 231 (400)
.+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK 229 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH
Confidence 566777788888888888888888888887653 3456777778888888888888888888877653 22222222
Q ss_pred ---------HHHHHHHhcCCchhHHHHHHHHHhCCCCCcH----HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHH
Q 015811 232 ---------VIMNELCKNGKMDNASRLLDLMVQCDVRPNA----FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDF 298 (400)
Q Consensus 232 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 298 (400)
.+...+...|++++|...++.+.+.. +.+. ..+..+...+...|++++|...++++.+.. +.+..
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 307 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHH
Confidence 12444566666666666666665543 1122 123334555666666666666666665543 33555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 299 SYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 299 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
.+..+..++...|++++|...++++.+.
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666666666666666666554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=1e-21 Score=168.32 Aligned_cols=317 Identities=11% Similarity=0.006 Sum_probs=262.8
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678888999999999999999999999875 3478889999999999999999999999999874 446788999999
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCccccccc---CChhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCC
Q 015811 125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFK---PNTVTYSII------------IDGLCKEGFVDKAKELFLQMKYENLN 189 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 189 (400)
.+...|++++|...++++.... + .+...+..+ ...+...|++++|.+.++.+.+.. +
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 151 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-------PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-V 151 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHcCChHHHHHHHHHHHhcC-------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 9999999999999999998864 2 344455444 578889999999999999998864 3
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHH---
Q 015811 190 PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYN--- 266 (400)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 266 (400)
.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK 229 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH
Confidence 467889999999999999999999999999874 5567888999999999999999999999998864 33344333
Q ss_pred ---------HHHHHHHcCCChHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHH
Q 015811 267 ---------TLMDGFCLTGKINRVKELFVSMESMGCKHDDF----SYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333 (400)
Q Consensus 267 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 333 (400)
.+...+...|++++|...++++.+.. +.+.. .+..+..++...|++++|...+++..+.. +.+..
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 307 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHH
Confidence 23667889999999999999998865 33332 35567889999999999999999998863 33778
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHh
Q 015811 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD-TCTYRTFIDGL 377 (400)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 377 (400)
.+..+...+...|++++|...|++..+. .|+ ...+..+..+.
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 8999999999999999999999999975 454 44455555443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.4e-21 Score=176.92 Aligned_cols=341 Identities=10% Similarity=0.017 Sum_probs=272.4
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc------
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN------ 80 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 80 (400)
.|.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...|+.+ .....+.
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~ 132 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEP 132 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------C
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHH
Confidence 36788999999999999999999999999998876 557899999999999999999999999633 2211100
Q ss_pred -------------------------------HH------------------------------HHHHHHHHHH-------
Q 015811 81 -------------------------------VV------------------------------TFTSLIKGLC------- 92 (400)
Q Consensus 81 -------------------------------~~------------------------------~~~~l~~~~~------- 92 (400)
.. ....+...+.
T Consensus 133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence 00 1111221211
Q ss_pred -hcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811 93 -AESRIVEAAALFTKLKAFGCEPNV-------ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII 164 (400)
Q Consensus 93 -~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 164 (400)
..|++++|..+++++.+.. +.+. .++..+...+...|++++|+..++++.... |+...+..+.
T Consensus 213 ~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~l~ 283 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--------PTPNSYIFLA 283 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CCchHHHHHH
Confidence 1247889999999998763 2222 346667788889999999999999998854 5588889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811 165 DGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD 244 (400)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (400)
..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 3467889999999999999999999999999875 445678889999999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhc---------
Q 015811 245 NASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC-----KHDDFSYNILINGYCKN--------- 310 (400)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~--------- 310 (400)
+|...++.+.+.. +.+...+..+...+...|++++|...++++.+... ......+.....++...
T Consensus 362 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 440 (537)
T 3fp2_A 362 ESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440 (537)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CC
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 9999999998875 55677889999999999999999999999876431 11122244556677777
Q ss_pred -CCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCC
Q 015811 311 -KEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND 362 (400)
Q Consensus 311 -~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 362 (400)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++..+..
T Consensus 441 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 441 EEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999998763 3367888999999999999999999999998743
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.2e-21 Score=165.82 Aligned_cols=294 Identities=11% Similarity=-0.001 Sum_probs=195.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 122 (400)
+.+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455556666666666677777777777766653 2244555556666667777777777777776653 3455666666
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 015811 123 INGLCRTG-HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHG 201 (400)
Q Consensus 123 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 201 (400)
...+...| ++++|...++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 168 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 67777777 6777777777776654 3455666777777777777777777777776653 2234555666677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC--------CCCcHHHHHHHHHHHH
Q 015811 202 FCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD--------VRPNAFTYNTLMDGFC 273 (400)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 273 (400)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. .+....++..+...+.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 777777777777777776653 3345666677777777777777777777665531 1333567777888888
Q ss_pred cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH-hccchHH
Q 015811 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL-FEIRQAE 349 (400)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~ 349 (400)
..|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 248 ~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8888888888888887764 4466777788888888888888888888877653 22566666666666 4555543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.6e-21 Score=163.83 Aligned_cols=285 Identities=13% Similarity=0.021 Sum_probs=159.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT 159 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++.... +.+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 92 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNPVS 92 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSTHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHH
Confidence 44455555555666666666666666665553 3344455555556666666666666666665543 334555
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 015811 160 YSIIIDGLCKEG-FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC 238 (400)
Q Consensus 160 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (400)
+..+...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 566666666666 6666666666665442 2234555566666666666666666666665543 223444555556666
Q ss_pred hcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHhc
Q 015811 239 KNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG--------CKHDDFSYNILINGYCKN 310 (400)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 310 (400)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+..++...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 6666666666666665543 3345555666666666666666666666654421 022234555666666666
Q ss_pred CCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 015811 311 KEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGL 377 (400)
Q Consensus 311 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (400)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 250 g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 66666666666655542 1244555555666666666666666666655432 11334444454444
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=1.1e-18 Score=155.89 Aligned_cols=349 Identities=10% Similarity=0.025 Sum_probs=291.2
Q ss_pred CCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhccCCcc
Q 015811 9 PPVSSFNILLGCLAK----NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK----MGQVSLGFVIFGRILRSCFAPN 80 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 80 (400)
.++.++..+...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|.++|++..+.+ +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 356777788888887 899999999999998864 67788889999998 899999999999998865 5
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCccccc
Q 015811 81 VVTFTSLIKGLCA----ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIGVV 152 (400)
Q Consensus 81 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 152 (400)
...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|++.|++..+.+
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG------ 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------
Confidence 6677778888888 789999999999998875 56778888888887 789999999999988754
Q ss_pred ccCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 015811 153 FKPNTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQ 224 (400)
Q Consensus 153 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 224 (400)
+...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++++|..++++..+.+
T Consensus 182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 253 (490)
T 2xm6_A 182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-- 253 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--
T ss_pred ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 56788888888887 899999999999998864 56677778888776 789999999999998765
Q ss_pred CCcccHHHHHHHHHh----cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC-----CChHHHHHHHHHHHhcCCCC
Q 015811 225 PNVVSSNVIMNELCK----NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT-----GKINRVKELFVSMESMGCKH 295 (400)
Q Consensus 225 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~ 295 (400)
+...+..+...|.. .+++++|...|+...+.+ +...+..+...|... +++++|...+++..+.+
T Consensus 254 -~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--- 326 (490)
T 2xm6_A 254 -NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--- 326 (490)
T ss_dssp -CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---
T ss_pred -CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---
Confidence 45567777778887 899999999999998765 456777788888777 89999999999998875
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc----cchHHHHHHHHHHHhhCCCCCChh
Q 015811 296 DDFSYNILINGYCKNK---EVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE----IRQAERALKLFVEMQGNDVAADTC 368 (400)
Q Consensus 296 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 368 (400)
+...+..+...|...| ++++|..+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~ 400 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSA 400 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHH
Confidence 5567778888887766 7899999999998863 67778888888877 799999999999998865 466
Q ss_pred hHHHHHHHhhc----CCcchhhHhhhhCC
Q 015811 369 TYRTFIDGLCV----RPQVRFTYARRKGN 393 (400)
Q Consensus 369 ~~~~l~~~~~~----~g~~~~a~~~~~~~ 393 (400)
.+..+...|.. .+++++|..+++..
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 77778888887 89999998877653
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=1.8e-21 Score=167.53 Aligned_cols=303 Identities=13% Similarity=0.036 Sum_probs=152.8
Q ss_pred hcCChhhHHH-HHHHHHhccCC---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 015811 58 KMGQVSLGFV-IFGRILRSCFA---PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI 133 (400)
Q Consensus 58 ~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (400)
..|++++|.+ .+++....... .+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466677776 66655443211 124456667777777777777777777777664 445666777777777777777
Q ss_pred HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 015811 134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213 (400)
Q Consensus 134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 213 (400)
+|+..++++.... +.+..++..+..++...|++++|...++++...... +...+..+... ..
T Consensus 116 ~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~--- 177 (368)
T 1fch_A 116 LAISALRRCLELK-------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG--- 177 (368)
T ss_dssp HHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------
T ss_pred HHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh---
Confidence 7777777776654 445667777777777777777777777777665321 11111111000 00
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811 214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESMG 292 (400)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (400)
. ..+. ..+..+. .+...|++++|...++.+.+..... +..++..+...+...|++++|...++++.+..
T Consensus 178 ----~----~~~~-~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 178 ----G----AGLG-PSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp -----------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----h----hccc-HHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0 0000 0000111 1224455555555555554432110 34455555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCC--------
Q 015811 293 CKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVA-------- 364 (400)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------- 364 (400)
+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+.+.|++++|...|+++.+....
T Consensus 248 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 248 -PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 3344555555555555555555555555554432 123445555555555555555555555554432100
Q ss_pred --CChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811 365 --ADTCTYRTFIDGLCVRPQVRFTYARRK 391 (400)
Q Consensus 365 --~~~~~~~~l~~~~~~~g~~~~a~~~~~ 391 (400)
....+|..+..+|...|++++|....+
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 013455555555666666665555443
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=5.7e-21 Score=164.34 Aligned_cols=291 Identities=11% Similarity=0.033 Sum_probs=184.0
Q ss_pred HHccCChhHHHH-HHHHHHhCCC-CC--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811 21 LAKNKHYDTVLS-LFKRLNSIGL-FP--DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR 96 (400)
Q Consensus 21 ~~~~~~~~~a~~-~~~~~~~~g~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (400)
+.-.|++++|++ .|++...... .| +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 345678888888 8876654321 11 35678889999999999999999999999875 3477889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH--------------
Q 015811 97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI-------------- 162 (400)
Q Consensus 97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 162 (400)
+++|...|+++.+.. +.+..++..+...+...|++++|+..++++.... +.+...+..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-------PAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------TTTGGGCC---------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHhhhhcccHHH
Confidence 999999999999875 5578889999999999999999999999998865 222222221
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 015811 163 -IIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN 240 (400)
Q Consensus 163 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (400)
.+..+...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANG 264 (368)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHc
Confidence 1222235566666666666665542111 34555666666666666666666666665542 22345555556666666
Q ss_pred CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHhc
Q 015811 241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKH----------DDFSYNILINGYCKN 310 (400)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~ 310 (400)
|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+..... ...+|..+..+|...
T Consensus 265 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 66666666666655543 3345555556666666666666666666554432110 144555555566666
Q ss_pred CCHHHHHHHHhh
Q 015811 311 KEVEEALSLYNE 322 (400)
Q Consensus 311 ~~~~~A~~~~~~ 322 (400)
|++++|..++++
T Consensus 344 g~~~~A~~~~~~ 355 (368)
T 1fch_A 344 GQSDAYGAADAR 355 (368)
T ss_dssp TCGGGHHHHHTT
T ss_pred CChHhHHHhHHH
Confidence 666665555543
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=2.7e-20 Score=159.90 Aligned_cols=278 Identities=11% Similarity=-0.036 Sum_probs=137.5
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
+...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44556666666666666666666666666543 3455666666666666666666666666666553 224556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
++...|++++|...++++.+.. +.+...+..+ ......+..+...+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNK-------------------------------KGSPGLTRRMSKSPVD 189 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC--------------------------------------------------C
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhh-------------------------------ccchHHHHHHHHHHhh
Confidence 6666666666666666665542 1111111111 0011223333444444
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811 170 EGFVDKAKELFLQMKYENLN-PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR 248 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 248 (400)
.|++++|...++++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|..
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444443211 023444444444444444444444444444432 2233444445555555555555555
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-----------CCCHHHHHHHHHHHHhcCCHHHHH
Q 015811 249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC-----------KHDDFSYNILINGYCKNKEVEEAL 317 (400)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~ 317 (400)
.++.+.+.. +.+..++..+..+|...|++++|...++++.+... ..+...|..+..++...|+.+.+.
T Consensus 269 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 269 AYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 555544432 22344555555555555555555555555543210 012456667777777777777777
Q ss_pred HHHhhh
Q 015811 318 SLYNEL 323 (400)
Q Consensus 318 ~~~~~~ 323 (400)
.+.++-
T Consensus 348 ~~~~~~ 353 (365)
T 4eqf_A 348 AANLGD 353 (365)
T ss_dssp HHHTTC
T ss_pred HHHHhh
Confidence 766653
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=6e-21 Score=164.01 Aligned_cols=265 Identities=10% Similarity=-0.054 Sum_probs=179.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT 159 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|+..|+++.... +.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHH
Confidence 44557778888888888888888888888765 4567788888888888888888888888887754 455778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----------hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCc
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPN-----------VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ-PNV 227 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 227 (400)
+..+..++...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+.... .+.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 8888888888888888888888887642 22 122233466677777778888877777765321 145
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015811 228 VSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGY 307 (400)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 307 (400)
.++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...++++.+.. +.+..++..+..+|
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 667777777777777777777777776654 4456677777777777777777777777777654 44566777777777
Q ss_pred HhcCCHHHHHHHHhhhhhCCCC-----------cCHHHHHHHHHHHhccchHHHHHHHHH
Q 015811 308 CKNKEVEEALSLYNELPFKGIK-----------PTVVTYNTLFHGLFEIRQAERALKLFV 356 (400)
Q Consensus 308 ~~~~~~~~A~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~~~~~~a~~~~~ 356 (400)
...|++++|...++++.+.... .+...|..+..++...|+.+.+..+.+
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7777777777777776643100 023456666666666666666555544
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.5e-17 Score=148.52 Aligned_cols=321 Identities=14% Similarity=0.056 Sum_probs=272.0
Q ss_pred CcchHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhccCCccH
Q 015811 10 PVSSFNILLGCLAK----NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK----MGQVSLGFVIFGRILRSCFAPNV 81 (400)
Q Consensus 10 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 81 (400)
++.++..|...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|...|++..+.+ +.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 147 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RD 147 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45678888888988 899999999999998865 67788888888888 889999999999998875 56
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCcccccc
Q 015811 82 VTFTSLIKGLCA----ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIGVVF 153 (400)
Q Consensus 82 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 153 (400)
..+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|+..|++..+.+
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------- 217 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG------- 217 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-------
Confidence 677888888887 789999999999999865 67788888888888 899999999999998754
Q ss_pred cCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 015811 154 KPNTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQP 225 (400)
Q Consensus 154 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 225 (400)
+...+..+...+.. .+++++|..+|++..+.+ +...+..+...+.. .+++++|...++...+.+
T Consensus 218 --~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--- 289 (490)
T 2xm6_A 218 --DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--- 289 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---
Confidence 55677888888876 889999999999998764 45667777777777 899999999999998765
Q ss_pred CcccHHHHHHHHHhc-----CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCC---ChHHHHHHHHHHHhcCCCCCH
Q 015811 226 NVVSSNVIMNELCKN-----GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTG---KINRVKELFVSMESMGCKHDD 297 (400)
Q Consensus 226 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~ 297 (400)
+...+..+...|... +++++|...++...+.+ +...+..+...|...| ++++|...+++..+.+ ++
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~ 363 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EK 363 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CH
Confidence 456777788888887 89999999999999865 4567777888787766 7899999999999864 67
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc----cchHHHHHHHHHHHhhCCC
Q 015811 298 FSYNILINGYCK----NKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE----IRQAERALKLFVEMQGNDV 363 (400)
Q Consensus 298 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 363 (400)
..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.+.
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 888889999988 899999999999998864 56677778888877 8999999999999988663
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=2.4e-19 Score=151.53 Aligned_cols=283 Identities=8% Similarity=-0.060 Sum_probs=189.0
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
.+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 356778888999999999999999999998765 4578889999999999999999999999999875 34778888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH--H
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID--G 166 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 166 (400)
..+...|++++|.+.++++.+.. +.+...+..+... .|+......+.. .
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~ 147 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------------DVDIDDLNVQSEDFF 147 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------------CC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------------HHHHHHHHHHHHhHH
Confidence 99999999999999999998764 2233333333110 001111111211 2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811 167 LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA 246 (400)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 246 (400)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 444555566666666555442 2244555556666666666666666666665543 23445566666666667777777
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHH
Q 015811 247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKH-----------DDFSYNILINGYCKNKEVEE 315 (400)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~ 315 (400)
...++.+.+.. +.+...+..+...+...|++++|...++++.+..... +...|..+..++...|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 77776666543 3455666777777777777777777777776643111 46677778888888888888
Q ss_pred HHHHHhhhhh
Q 015811 316 ALSLYNELPF 325 (400)
Q Consensus 316 A~~~~~~~~~ 325 (400)
|..++++..+
T Consensus 305 A~~~~~~~l~ 314 (327)
T 3cv0_A 305 VELTYAQNVE 314 (327)
T ss_dssp HHHHTTCCSH
T ss_pred HHHHHHHHHH
Confidence 8888776553
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=3.8e-19 Score=150.22 Aligned_cols=281 Identities=9% Similarity=0.006 Sum_probs=225.1
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+...+......+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34567788889999999999999999999875 3477888899999999999999999999999875 557788999999
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH--HH
Q 015811 125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIH--GF 202 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~ 202 (400)
.+...|++++|++.++++.... +.+...+..+.... |+......+.. .+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-------PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFF 148 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-------TTTTTC------------------------------------------CCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHH
Confidence 9999999999999999998764 23333333331111 11112223312 36
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHH
Q 015811 203 CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVK 282 (400)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 282 (400)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 77899999999999999875 4467888999999999999999999999998865 556788999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc-----------CHHHHHHHHHHHhccchHHHH
Q 015811 283 ELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP-----------TVVTYNTLFHGLFEIRQAERA 351 (400)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~~~~~~a 351 (400)
..++++.+.. +.+...+..+..++...|++++|...++++.+..... +...|..+..++...|++++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 9999998875 5578899999999999999999999999988752221 467888999999999999999
Q ss_pred HHHHHHHh
Q 015811 352 LKLFVEMQ 359 (400)
Q Consensus 352 ~~~~~~~~ 359 (400)
..++++..
T Consensus 306 ~~~~~~~l 313 (327)
T 3cv0_A 306 ELTYAQNV 313 (327)
T ss_dssp HHHTTCCS
T ss_pred HHHHHHHH
Confidence 99987644
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.5e-17 Score=149.94 Aligned_cols=372 Identities=11% Similarity=0.033 Sum_probs=253.4
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.|.+..+|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++... |+...|..
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 4678899999998 478999999999999999864 5578899999999999999999999999999874 57777877
Q ss_pred HHHHH-HhcCCHHHHHH----HHHHHHHc-CCCC-ChhhHHHHHHHHHh---------cCChHHHHHHHHHHHcCCCccc
Q 015811 87 LIKGL-CAESRIVEAAA----LFTKLKAF-GCEP-NVITYNTLINGLCR---------TGHTIVALNLFKEMTNGNGEIG 150 (400)
Q Consensus 87 l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~ 150 (400)
++... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++......
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~--- 161 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM--- 161 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh---
Confidence 77533 34566665554 77766543 4443 45667777766554 6788899999988876321
Q ss_pred ccccCChhhHH-----------------------------------------------------------------HHHH
Q 015811 151 VVFKPNTVTYS-----------------------------------------------------------------IIID 165 (400)
Q Consensus 151 ~~~~~~~~~~~-----------------------------------------------------------------~l~~ 165 (400)
......|. ..+.
T Consensus 162 ---~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 162 ---INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp ---TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 11111221 1111
Q ss_pred HHHhc----CCh----HHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCC
Q 015811 166 GLCKE----GFV----DKAKELFLQMKYENLNPNVVTYTSLIHGFCH-------ANDWN-------EAKGLLIEMVDQGV 223 (400)
Q Consensus 166 ~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~ 223 (400)
..... ++. +.+..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 11110 111 24444555555432 2345566666666654 57766 78888888876322
Q ss_pred CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH-HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 015811 224 QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA-FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI 302 (400)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 302 (400)
+.+...+..++..+.+.|++++|..+|+.+.+.. +.+. ..|..++..+.+.|++++|..+|++..+.. +.+...|..
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~ 395 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT 395 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHH
Confidence 3456677777888888888888888888888753 2232 477777777778888888888888888753 222333322
Q ss_pred HHHH-HHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCC-CCCC--hhhHHHHHHHhh
Q 015811 303 LING-YCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND-VAAD--TCTYRTFIDGLC 378 (400)
Q Consensus 303 l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~ 378 (400)
.+.. +...|++++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2222 335788899999988887652 2257788888888888899999999999888653 2222 336777777777
Q ss_pred cCCcchhhHhhhhC
Q 015811 379 VRPQVRFTYARRKG 392 (400)
Q Consensus 379 ~~g~~~~a~~~~~~ 392 (400)
..|+.+.+..+.++
T Consensus 475 ~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 475 NIGDLASILKVEKR 488 (530)
T ss_dssp HSSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 88888887766554
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-17 Score=148.43 Aligned_cols=366 Identities=11% Similarity=-0.024 Sum_probs=247.2
Q ss_pred CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc-
Q 015811 6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSI--------GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC- 76 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 76 (400)
+.+..+..||.+...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++..+..
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 34455778999999999999999999999987542 113346789999999999999999999999887531
Q ss_pred -----C-CccHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCChHHHHHHHHHHHcC
Q 015811 77 -----F-APNVVTFTSLIKGLCA--ESRIVEAAALFTKLKAFGCEPNVITYNTLING---LCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 77 -----~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~ 145 (400)
. .....++.....++.. .+++++|...|++..+.. +-++..+..+..+ +...++.++|++.+++..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 0 1134556655555554 457999999999999874 3345555555544 34567888899999988875
Q ss_pred CCcccccccCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 146 NGEIGVVFKPNTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
. +.+...+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.
T Consensus 205 ~-------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 205 N-------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp C-------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 4 4455666666555544 467889999999988764 346778889999999999999999999999886
Q ss_pred CCCCCcccHHHHHHHHHhc-------------------CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHH
Q 015811 222 GVQPNVVSSNVIMNELCKN-------------------GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVK 282 (400)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 282 (400)
. +.+..++..+..+|... +..+.|...++...+.+ +.+...+..+...+...|++++|.
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence 4 33455666665555322 23566777777777654 445667888899999999999999
Q ss_pred HHHHHHHhcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 283 ELFVSMESMGCKHDDF--SYNILIN-GYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 283 ~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
..|++..+....+... .+..+.. .....|++++|+..+++..+. .|+..... +....+.+++++..
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l 423 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHH
Confidence 9999998865332221 2222322 235678999999999988875 44433222 22334445555555
Q ss_pred hCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCC
Q 015811 360 GNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNS 394 (400)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (400)
+.+ +.+..+|..+..+|...|++++|...+++..
T Consensus 424 ~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 424 SKN-GADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHC-C-CTTHHHHHHHHHHHHHHCC----------
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 3466788889999999999999988877654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=3.3e-18 Score=141.25 Aligned_cols=248 Identities=14% Similarity=0.089 Sum_probs=102.7
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHH
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPD--LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIV 98 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 98 (400)
....|++..|+..++..... .|+ ......+.++|...|+++.|+..++. . .+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 33445555555554443322 122 12333344455555555555443322 1 1334444444445555555555
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHH
Q 015811 99 EAAALFTKLKAFGCEP-NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAK 177 (400)
Q Consensus 99 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 177 (400)
+|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++.++.+.|++++|.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555555554443222 233333344445555555555555443 123334444444555555555555
Q ss_pred HHHHHHHHcCCCCChHhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 178 ELFLQMKYENLNPNVVTY---TSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
+.++.+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555544432 221110 011122222244444444444444431 2233334444444444444444444444444
Q ss_pred hCCCCCcHHHHHHHHHHHHcCCChHH-HHHHHHHHHh
Q 015811 255 QCDVRPNAFTYNTLMDGFCLTGKINR-VKELFVSMES 290 (400)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 290 (400)
+.. +-+..++..++..+...|+.++ +..+++++.+
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 332 2233344444444444444332 2334444433
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=6.7e-18 Score=139.39 Aligned_cols=278 Identities=10% Similarity=-0.000 Sum_probs=222.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 015811 53 INCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 132 (400)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 132 (400)
++.....|++..|+..++.+....+.........+.++|...|+++.|...++.. -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 3456678999999999988766533322345667789999999999999877552 266778888999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 015811 133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAK 212 (400)
Q Consensus 133 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 212 (400)
++|++.++++..... .|.+...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|.
T Consensus 82 ~~A~~~l~~ll~~~~-----~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 82 DAIVAELDREMSRSV-----DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHHHHSCC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999876531 134566777788999999999999999987 457888999999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHH----HHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015811 213 GLLIEMVDQGVQPNVVSSNVI----MNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSM 288 (400)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (400)
..++++.+.. |+.. ...+ +..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++
T Consensus 151 ~~l~~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 151 KELKKMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999874 4432 2223 334445689999999999999874 678899999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHH
Q 015811 289 ESMGCKHDDFSYNILINGYCKNKEVEE-ALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLF 355 (400)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 355 (400)
.+.. +.+..++..++..+...|+.++ +..+++++.+. .|+... +.....+.+.++++..-|
T Consensus 227 l~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 227 LDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 9876 5688899999999999999876 67899998876 454432 234566777888877655
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=5.3e-19 Score=149.21 Aligned_cols=266 Identities=12% Similarity=0.107 Sum_probs=125.8
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL 91 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++...+. .+++.+.+.++.+|
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 5888899999999999999988865 256678888888888889999998877776664 44567788888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG 171 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (400)
.+.|++.++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------------~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLG 162 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------------TCHHHHHHHHHTTT
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------hhHHHHHHHHHHhc
Confidence 99999888887774 366678888999999999999999998865 26888899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHH
Q 015811 172 FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLD 251 (400)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 251 (400)
++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|.+++|..+++
T Consensus 163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999988887 2678889999999999999988554443 22333445567888889999999999998
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH-hcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 015811 252 LMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME-SMGCKH------DDFSYNILINGYCKNKEVEEALSLY 320 (400)
Q Consensus 252 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~ 320 (400)
...... +.....|+.+..+|++- ++++..+.++... +.+++| +...|..++..|...++++.|....
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 888765 55667777777766654 3444444433332 122233 3557888888888889998887644
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=7.5e-19 Score=148.29 Aligned_cols=281 Identities=12% Similarity=0.099 Sum_probs=130.4
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811 23 KNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA 102 (400)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
+.|++++|.+.++++ +++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567899999998887 34458999999999999999999999652 477788899999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 015811 103 LFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ 182 (400)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (400)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88877764 4567788889999999999999887773 35666999999999999999999999987
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH
Q 015811 183 MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA 262 (400)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 262 (400)
+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCH
Confidence 6 36889999999999999999999887 26788999999999999999996554432 2334
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHhhhhhCCCCc------CHHH
Q 015811 263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN--KEVEEALSLYNELPFKGIKP------TVVT 334 (400)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~p------~~~~ 334 (400)
.....++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++..+.++.|..-. .++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHH
Confidence 445578888999999999999999988766 55677888888777764 34555555555332 2233 3456
Q ss_pred HHHHHHHHhccchHHHHHH
Q 015811 335 YNTLFHGLFEIRQAERALK 353 (400)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~ 353 (400)
|..++-.|...++++.|..
T Consensus 285 w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHH
Confidence 8888888888888888876
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.1e-15 Score=135.95 Aligned_cols=339 Identities=10% Similarity=0.026 Sum_probs=246.1
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCChhhHHH----HHHHHHhc-cCC-c
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCF-CKMGQVSLGFV----IFGRILRS-CFA-P 79 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~ 79 (400)
.|.+...|..++..+.+.|++++|..+|+++.... |+...|...+... ...|+.+.|.+ +|+..+.. |.. +
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~ 119 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc
Confidence 46788899999999999999999999999998764 6888888777533 45677777665 66666542 333 3
Q ss_pred cHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHH-------------HhcCChH--
Q 015811 80 NVVTFTSLIKGLCA---------ESRIVEAAALFTKLKAFGCEPN--VITYNTLINGL-------------CRTGHTI-- 133 (400)
Q Consensus 80 ~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~-------------~~~~~~~-- 133 (400)
+...|...+..... .|+++.|..+|++.++. +.+ ...|....... .+.+++.
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A 197 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNA 197 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHH
Confidence 45677777766554 67888888888887763 211 12222111100 0011122
Q ss_pred ----------------------------------------------------------HHHHHHHHHHcCCCcccccccC
Q 015811 134 ----------------------------------------------------------VALNLFKEMTNGNGEIGVVFKP 155 (400)
Q Consensus 134 ----------------------------------------------------------~a~~~~~~~~~~~~~~~~~~~~ 155 (400)
.+..+|++.... .+.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-------~p~ 270 (530)
T 2ooe_A 198 RRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-------LGH 270 (530)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-------HTT
T ss_pred HHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-------CCC
Confidence 333344444432 244
Q ss_pred ChhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 156 NTVTYSIIIDGLCK-------EGFVD-------KAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 156 ~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+++++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 56777777777765 68987 89999999986323345788999999999999999999999999986
Q ss_pred CCCCCc--ccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-HHcCCChHHHHHHHHHHHhcCCCCCHH
Q 015811 222 GVQPNV--VSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-FCLTGKINRVKELFVSMESMGCKHDDF 298 (400)
Q Consensus 222 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~ 298 (400)
.|+. ..|...+..+.+.|++++|..+|+...+.. +.+...+...+.. +...|+.++|..+|+...+.. +.+..
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~ 426 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE 426 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHH
Confidence 4442 478888888889999999999999998864 2333333333222 346899999999999998864 45788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhhCCC-CcC--HHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 299 SYNILINGYCKNKEVEEALSLYNELPFKGI-KPT--VVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 299 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
.|..++..+.+.|+.++|..+|++...... .|+ ...|...+......|+.+.+..+++++.+
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999987632 232 45788888888889999999999999875
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=162.63 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=112.0
Q ss_pred CcccHHHHHHHHHhcCCchhHHHHHHHHHh---CCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 015811 226 NVVSSNVIMNELCKNGKMDNASRLLDLMVQ---CDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI 302 (400)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 302 (400)
-..+|+.+|.+|++.|++++|.++|..|.+ .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877654 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC------hhhHHHHHH
Q 015811 303 LINGYCKNKE-VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD------TCTYRTFID 375 (400)
Q Consensus 303 l~~~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 375 (400)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+ +..++..+++ ..+..|+ ..+-..|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 8888888887 46788888888888888888888877654433 3444445444 3344443 333344555
Q ss_pred HhhcCC
Q 015811 376 GLCVRP 381 (400)
Q Consensus 376 ~~~~~g 381 (400)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555443
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.1e-16 Score=128.60 Aligned_cols=233 Identities=11% Similarity=0.018 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT 159 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
....+..+...+...|++++|...|++..+.. .+..++..+..++...|++++|+..+++.....+......+.....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34567778888888899999999998888876 6778888888889999999999999888876431100000001577
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK 239 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (400)
+..+..++...|++++|...++++.... |+. ..+...|++++|...++.+.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 8888899999999999999999988753 442 34556677888888888877753 3344566667777777
Q ss_pred cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015811 240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSL 319 (400)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 319 (400)
.|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777777777777777654 4456667777777777777777777777777654 44566677777777777777777777
Q ss_pred HhhhhhC
Q 015811 320 YNELPFK 326 (400)
Q Consensus 320 ~~~~~~~ 326 (400)
+++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776654
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.3e-17 Score=132.08 Aligned_cols=225 Identities=8% Similarity=0.007 Sum_probs=152.2
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--c----HHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--N----VVTF 84 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 84 (400)
+.+|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|.+.+++..+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777788888888888888888877766 667777888888888888888888888777643211 1 4667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811 85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII 164 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 164 (400)
..+...+...|++++|...|++..+. .|+. ..+...|++++|...++.+.... +.+...+..+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~ 146 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHHH
Confidence 77777777788888888888777765 3332 33445566777777777776653 34556666677
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811 165 DGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD 244 (400)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (400)
..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+..++...|+++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHH
Confidence 77777777777777777776653 2345666666666667777777777776666653 334455556666666666666
Q ss_pred hHHHHHHHHHh
Q 015811 245 NASRLLDLMVQ 255 (400)
Q Consensus 245 ~a~~~~~~~~~ 255 (400)
+|...++...+
T Consensus 225 ~A~~~~~~a~~ 235 (258)
T 3uq3_A 225 SALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=162.69 Aligned_cols=153 Identities=10% Similarity=0.172 Sum_probs=125.6
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHh---CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNS---IGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
.+||++|++|++.|++++|.++|++|.+ .|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4799999999999999999999988764 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccc--ccCChhhHHHHHH
Q 015811 89 KGLCAESR-IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVV--FKPNTVTYSIIID 165 (400)
Q Consensus 89 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 165 (400)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++.++++ .++.... .+|...+...+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv---~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV---KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG---CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh---CcccCCCCCCcccccchHHHHH
Confidence 99999998 578999999999999999999999998655443 334444444 2222111 1122455666777
Q ss_pred HHHhcC
Q 015811 166 GLCKEG 171 (400)
Q Consensus 166 ~~~~~~ 171 (400)
.+.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777654
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=1.2e-16 Score=126.25 Aligned_cols=199 Identities=13% Similarity=-0.021 Sum_probs=129.2
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
|+++.++..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 6778888888888888999999999998888765 5577888888888888899999998888888875 3366777778
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC
Q 015811 88 IKGLCAE-----------SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN 156 (400)
Q Consensus 88 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (400)
..++... |++++|...|++..+.. +.+...+..+..++...|++++|+..|++..+.. .+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~ 150 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--------DT 150 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--------cc
Confidence 8888777 66677776666666653 3345556666666666666666666666665531 34
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015811 157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEM 218 (400)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 218 (400)
...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5556666666666666666666666666543 224455566666666666666666666544
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.5e-15 Score=135.05 Aligned_cols=333 Identities=10% Similarity=-0.082 Sum_probs=228.2
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC-----C--CCCCHHhHHHHHHHHHhc--CChhhHHHHHHHHHhccC
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSI-----G--LFPDLYTYSILINCFCKM--GQVSLGFVIFGRILRSCF 77 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~ 77 (400)
.|....+|+.+..+|...|++++|...+++..+. + ......++.....++... +++++|.+.|++.++..+
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 4556788999999999999999999999987542 1 112356677666666554 578999999999998753
Q ss_pred CccHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCccc
Q 015811 78 APNVVTFTSLIKG---LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIG 150 (400)
Q Consensus 78 ~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 150 (400)
. +...+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.. .++.++|.+.+++.....
T Consensus 170 ~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---- 243 (472)
T 4g1t_A 170 K-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---- 243 (472)
T ss_dssp T-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC----
T ss_pred C-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC----
Confidence 2 55555555544 345677788999999988774 4455666666555544 467789999999988764
Q ss_pred ccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-------------------CCHHHH
Q 015811 151 VVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA-------------------NDWNEA 211 (400)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a 211 (400)
+.+...+..+...+...|++++|...+++..+.. +-+..++..+..+|... +.++.|
T Consensus 244 ---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 244 ---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319 (472)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Confidence 5677889999999999999999999999998764 23456666665554322 235678
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHH--HHHHHHH-HHHcCCChHHHHHHHHHH
Q 015811 212 KGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAF--TYNTLMD-GFCLTGKINRVKELFVSM 288 (400)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~ 288 (400)
...++...+.. +.+...+..+...+...|++++|...|++..+....+... .+..+.. .....|+.++|...+++.
T Consensus 320 ~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 320 VAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888887764 4567788899999999999999999999998865433221 2223322 345789999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCC
Q 015811 289 ESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND 362 (400)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 362 (400)
.+.. |+..... +....+..++++..... +.+..+|..+...+...|++++|++.|++.++.+
T Consensus 399 l~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 399 VKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 8864 4432222 12334455566555543 3467789999999999999999999999988754
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=1.4e-16 Score=125.76 Aligned_cols=200 Identities=16% Similarity=0.024 Sum_probs=144.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 122 (400)
+++...+..+...+.+.|++++|...|++.++.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677889999999999999999999999999876 3478889999999999999999999999999885 5567788888
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 015811 123 INGLCRT-----------GHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPN 191 (400)
Q Consensus 123 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 191 (400)
..++... |++++|+..+++..+.. |.+...+..+..++...|++++|+..|++..+.. .+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 8888888 77777777777777654 3456667777777777777777777777777665 46
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 192 VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6677777777777777777777777776653 3345556666666777777777776666543
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=1e-15 Score=125.63 Aligned_cols=199 Identities=12% Similarity=0.112 Sum_probs=114.9
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc--HHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN--VVTFTSLIK 89 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 89 (400)
..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++.+.+..++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445556666777777777777777776654 33445666666677777777777777777766321111 223566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
.+...|++++|...|++..+.. +.+..++..+...+...|++++|+..+++..... +.+...+..+...+..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-------TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-------CCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-------CCcHHHHHHHHHHHHH
Confidence 6677777777777777666653 3345566666666666666666666666666543 3344455555523333
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---HHHHHHHHHHHHH
Q 015811 170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND---WNEAKGLLIEMVD 220 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 220 (400)
.+++++|.+.|+++.+.. +.+...+..+...+...++ +++|...+++..+
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 346666666666665542 1223444444444444444 4445555554443
No 40
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=1.3e-14 Score=137.00 Aligned_cols=321 Identities=12% Similarity=0.127 Sum_probs=205.8
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
++.--...+..|...|.+.+|++++++....+- ..+...-+.++.+..+. +..+..+...+.... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 334445678888899999999999999984321 12345555566665555 445555555554421 1 2336
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL 167 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (400)
...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------------~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------------EPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------------CHHHHHHHHHHH
Confidence 667777888888888887752 11222222222 5677777777777542 355777777888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811 168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS 247 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (400)
...|++++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++..
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence 8888888888777553 256667777777888888888888887766653 33333445777777777776433
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC
Q 015811 248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG 327 (400)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 327 (400)
.+. + .++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++..
T Consensus 1188 ~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1188 EFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred HHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 332 2 334555666777777778888887777764 357777777777777777777777663
Q ss_pred CCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 328 IKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++.-
T Consensus 1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1249 ---STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred ---CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666666666666666666665442 2234445556666666777776666665443
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=4.2e-16 Score=132.93 Aligned_cols=234 Identities=7% Similarity=0.023 Sum_probs=153.5
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ-VSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
+..+|+.+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|+ +++|+..|+++++..+. +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 34567777777777777777777777777654 4456777777777777775 77777777777776533 666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
.++...|++++|+..|+++++.. +-+..+|..+..++...|++++|+..++++.... +.+...|+.+..++.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-------P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 77777777777777777777764 4466677777777777777777777777777654 445667777777777
Q ss_pred h-cCChHHH-----HHHHHHHHHcCCCCChHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 015811 169 K-EGFVDKA-----KELFLQMKYENLNPNVVTYTSLIHGFCHAN--DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN 240 (400)
Q Consensus 169 ~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (400)
. .|..++| +..+++.+... +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 6 4444555 36666666543 224556666666666665 466666666665 22 233445555666666655
Q ss_pred C---------CchhHHHHHHHH-HhC
Q 015811 241 G---------KMDNASRLLDLM-VQC 256 (400)
Q Consensus 241 ~---------~~~~a~~~~~~~-~~~ 256 (400)
| ..++|..+++.+ .+.
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred hcccccchHHHHHHHHHHHHHHHHHh
Confidence 3 135666666666 443
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=1.6e-15 Score=124.47 Aligned_cols=234 Identities=6% Similarity=0.019 Sum_probs=140.4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHH
Q 015811 47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVI----TYNTL 122 (400)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l 122 (400)
..+......+...|++++|...|+++++..+ .+...+..+..++...|++++|...+++..+.+ ++.. +|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHH
Confidence 3455566666777777777777777776542 244466667777777777777777777776632 2222 26666
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF 202 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (400)
...+...|++++|+..+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAY 152 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHH
Confidence 777777777777777777776653 3455667777777777777777777777666542 22445555555233
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---chhHHHHHHHHHhCC-CCCc------HHHHHHHHHHH
Q 015811 203 CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK---MDNASRLLDLMVQCD-VRPN------AFTYNTLMDGF 272 (400)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~ 272 (400)
...+++++|...++++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ...+..+...|
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 34447777777777766653 2234455555566666666 666666666554431 0122 13455555556
Q ss_pred HcCCChHHHHHHHHHHHhcC
Q 015811 273 CLTGKINRVKELFVSMESMG 292 (400)
Q Consensus 273 ~~~~~~~~a~~~~~~~~~~~ 292 (400)
...|++++|...++++.+..
T Consensus 232 ~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 66666666666666665543
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=1.2e-14 Score=119.33 Aligned_cols=226 Identities=9% Similarity=-0.049 Sum_probs=157.7
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhccCCccHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK----MGQVSLGFVIFGRILRSCFAPNVVT 83 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 83 (400)
|.++.++..+...+...|++++|+..|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 455677777788888888888888888887763 355677777777777 788888888888877764 5666
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCcccccccC
Q 015811 84 FTSLIKGLCA----ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIGVVFKP 155 (400)
Q Consensus 84 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (400)
+..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--------- 144 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--------- 144 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---------
Confidence 7777777777 788888888888777654 56667777777777 777777777777776643
Q ss_pred ChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCc
Q 015811 156 NTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQPNV 227 (400)
Q Consensus 156 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 227 (400)
+...+..+...+.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +.
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 218 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NG 218 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CH
Confidence 34556666666666 677777777777776653 34556666666666 677777777777766653 24
Q ss_pred ccHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 015811 228 VSSNVIMNELCK----NGKMDNASRLLDLMVQCD 257 (400)
Q Consensus 228 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 257 (400)
..+..+..+|.. .+++++|...++...+.+
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 455556666666 667777777776666654
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.74 E-value=1.4e-15 Score=133.75 Aligned_cols=343 Identities=13% Similarity=0.035 Sum_probs=198.7
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh---hhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811 15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV---SLGFVIFGRILRSCFAPNVVTFTSLIKGL 91 (400)
Q Consensus 15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
..+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|..+|++..+. +...+..+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 346778888999999999999998766 334555666667777877 8999999998864 555666677655
Q ss_pred HhcC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH---HHHHHHHHHHcCCCcccccccCChhhHHHH
Q 015811 92 CAES-----RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI---VALNLFKEMTNGNGEIGVVFKPNTVTYSII 163 (400)
Q Consensus 92 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (400)
...+ ++++|...|++..+.| +...+..|...|...+... ++.+.+......+ +......+
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---------~~~a~~~L 147 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---------YPEAGLAQ 147 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---------CTTHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---------CHHHHHHH
Confidence 5554 7889999999999876 3336677777777665433 3444444444322 45566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 015811 164 IDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAN---DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN 240 (400)
Q Consensus 164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (400)
...|...+.++++......+.+.-...+...+..+...|...| +.++|+..|+...+.| +++...+..+...|...
T Consensus 148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 148 VLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC
Confidence 6777766654444443222222111223336667777777777 7778888887777776 33444435555566444
Q ss_pred ----CCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-H--HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--
Q 015811 241 ----GKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-F--CLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNK-- 311 (400)
Q Consensus 241 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 311 (400)
+++++|...|+... . -++..+..+... + ...+++++|...|++..+.| +...+..+...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 57777888887776 2 244455555555 3 45677888888888877765 5666666666666 44
Q ss_pred ---CHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc----cchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----C
Q 015811 312 ---EVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE----IRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV----R 380 (400)
Q Consensus 312 ---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 380 (400)
++++|..+|++.. .| ++..+..|...|.. ..++++|..+|++..+.|. ......|...|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCC
Confidence 7888888887776 32 45555555555544 3377788888877776653 2233344444432 3
Q ss_pred CcchhhHhhhhC
Q 015811 381 PQVRFTYARRKG 392 (400)
Q Consensus 381 g~~~~a~~~~~~ 392 (400)
.+.++|..+++.
T Consensus 372 ~d~~~A~~~~~~ 383 (452)
T 3e4b_A 372 PDPLNAYVFSQL 383 (452)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 466666665543
No 45
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=3.4e-14 Score=134.27 Aligned_cols=318 Identities=11% Similarity=0.108 Sum_probs=226.9
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
..+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.+++ -+..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 345667777888888888887752 12222233332 567788888877754 2466788888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD 174 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (400)
|++++|.+.|.+. .+...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.++++
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--------~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------ccccccHHHHHHHHhhcCHH
Confidence 8888888888553 467777888888888888888888888776643 33333345788888888877
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 175 KAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
+...+. + .++...|..+...|...|++++|..+|... ..|..++.++.+.|+++.|.+.+++.
T Consensus 1185 ele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1185 ELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 533332 2 345666777888888888888888888774 36888888888888888888888876
Q ss_pred hCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHH
Q 015811 255 QCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVT 334 (400)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 334 (400)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 24578888888888888888887766542 3456677889999999999999999998887553 223445
Q ss_pred HHHHHHHHh--ccchHHHHHHHHHHHhhCCCCC------ChhhHHHHHHHhhcCCcchhhHhhh
Q 015811 335 YNTLFHGLF--EIRQAERALKLFVEMQGNDVAA------DTCTYRTFIDGLCVRPQVRFTYARR 390 (400)
Q Consensus 335 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 390 (400)
|+-+...+. +-++..++.++|..-.. ++| +...|..++-.|.+.|+++.|....
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 655555554 45566666666664322 333 4567999999999999999987443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=6.2e-16 Score=127.07 Aligned_cols=198 Identities=14% Similarity=-0.043 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811 82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS 161 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
.++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..++++.... +.+...+.
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~ 115 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHL 115 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------ccccHHHH
Confidence 334444444444444444444444444432 2234444444444444555555555554444432 22344444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811 162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG 241 (400)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (400)
.+..++...|++++|...++++.+.. |+.......+..+...|++++|...+....... +++... ..++..+...+
T Consensus 116 ~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 191 (275)
T 1xnf_A 116 NRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNI 191 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHH-HHHHHHHHHhc
Confidence 44555555555555555555544431 222222222233333455555555554444432 112222 22333444444
Q ss_pred CchhHHHHHHHHHhCCCC---CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811 242 KMDNASRLLDLMVQCDVR---PNAFTYNTLMDGFCLTGKINRVKELFVSMESM 291 (400)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (400)
+.++|...+....+.... .+...+..+...+...|++++|...++++.+.
T Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 444455544444332100 01234444444444555555555555554443
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=3.4e-15 Score=127.35 Aligned_cols=217 Identities=12% Similarity=0.025 Sum_probs=122.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR-IVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
...|..+..++...|++++|++.++++++..+ -+..+|+.+..++...|+ +++|+..|++.++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34566666666666667777777766666542 255566666666666664 666666666666654 335566666666
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811 125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH 204 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (400)
++...|++++|+..|+++.... +.+...|..+..++...|++++|+..++++++... -+...|+.+..++..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 6666666666666666666654 44556666666666666666666666666665532 245556666666555
Q ss_pred -cCCHHHH-----HHHHHHHHHCCCCCCcccHHHHHHHHHhcC--CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC
Q 015811 205 -ANDWNEA-----KGLLIEMVDQGVQPNVVSSNVIMNELCKNG--KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT 275 (400)
Q Consensus 205 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (400)
.|..++| +..+++.+... +-+...|..+..++...| ++++|.+.+..+ +.. +.+...+..++..|...
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHH
Confidence 3443444 34455554432 223344444444444444 345555555444 221 23344444455444443
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=3.8e-15 Score=118.39 Aligned_cols=205 Identities=10% Similarity=-0.045 Sum_probs=127.1
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
|.++.+|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 3456667777777777777777777777776654 3456666777777777777777777777776653 2255566666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811 88 IKGLCAE-SRIVEAAALFTKLKAFGCEP-NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID 165 (400)
Q Consensus 88 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (400)
...+... |++++|...++++.+.+..| +...+..+..++...|++++|+..++++.... +.+...+..+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~ 155 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-------PQFPPAFKELAR 155 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCchHHHHHHH
Confidence 6666677 77777777777666521122 24455666666666666666666666665543 334555666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 166 GLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
++...|++++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666666666666655432134445555555556666666666666665543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=8.7e-16 Score=123.73 Aligned_cols=201 Identities=14% Similarity=0.126 Sum_probs=117.1
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
...+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44566666777777777777777777776654 4456677777777777777777777777776653 235566666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|+..++++.... +.+...+..+..++..
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------ENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHH
Confidence 7777777777777777766654 3455666666666777777777777777666543 3445566666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
.|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666666666666542 224455566666666666666666666666554
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=3.1e-15 Score=121.25 Aligned_cols=203 Identities=13% Similarity=-0.028 Sum_probs=148.8
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING 125 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (400)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4566777777778888888888888877764 3356677777788888888888888888877764 3456677777778
Q ss_pred HHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015811 126 LCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA 205 (400)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (400)
+...|++++|++.++++..... .+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTL-----YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTT-----CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHhCcc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 8888888888888888776210 13355677777778888888888888888877653 23566777778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 015811 206 NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD 257 (400)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 257 (400)
|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88888888888877653 3455667777777888888888888888877753
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=5.2e-14 Score=115.47 Aligned_cols=224 Identities=14% Similarity=-0.038 Sum_probs=133.4
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCA----ESRIVEAAALFTKLKAFGCEPNVITYN 120 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 120 (400)
+..++..+...+...|++++|.+.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666666667777777777777776662 244556666666666 677777777777766654 555666
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCh
Q 015811 121 TLINGLCR----TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNV 192 (400)
Q Consensus 121 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 192 (400)
.+...+.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|+..|++..+.+ +.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 66666666 666667766666665532 44556666666666 666666666666666543 34
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCCchhHHHHHHHHHhCCCCCcHHH
Q 015811 193 VTYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK----NGKMDNASRLLDLMVQCDVRPNAFT 264 (400)
Q Consensus 193 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 264 (400)
..+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...++...+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 455555555555 566666666666665543 33444555555555 556666666665555543 1344
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHhcC
Q 015811 265 YNTLMDGFCL----TGKINRVKELFVSMESMG 292 (400)
Q Consensus 265 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 292 (400)
+..+...|.. .+++++|...+++..+.+
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4455555555 555555555555555543
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=8e-16 Score=126.42 Aligned_cols=247 Identities=11% Similarity=-0.022 Sum_probs=139.8
Q ss_pred hcCCHHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 93 AESRIVEAAALFTKLKAFGC---EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
..|++++|...++++.+... +.+..++..+...+...|++++|+..|+++.... +.+...+..+..++..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHH
Confidence 34667777777777765421 1134556666777777777777777777776653 3456667777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHH
Q 015811 170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRL 249 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 249 (400)
.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...
T Consensus 90 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHH
Confidence 777777777777776653 2245666666677777777777777777766642 3333333344444555666666666
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 250 LDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCK---HDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
+....... +++...+ .++..+...++.++|...+....+.... .+...+..+..+|...|++++|...++++.+.
T Consensus 167 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 167 LKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 65555442 2333333 2444555556666666666665443210 01345555666666666666666666666554
Q ss_pred CCCcCHHHHHHHHHHHhccchHHHHHHHH
Q 015811 327 GIKPTVVTYNTLFHGLFEIRQAERALKLF 355 (400)
Q Consensus 327 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 355 (400)
.|+. +.....++...|++++|++.+
T Consensus 245 --~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 --NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred --Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 2211 122233445555555555544
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=2.1e-14 Score=116.31 Aligned_cols=202 Identities=11% Similarity=0.017 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY 160 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|++.++++.... +.+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------SRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHH
Confidence 4556666666667777777777777766653 3455666666667777777777777777666543 3455666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 015811 161 SIIIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK 239 (400)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (400)
..+..++...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 666667777777777777777766522223 34556666666667777777777777766653 2345556666666777
Q ss_pred cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811 240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG 292 (400)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (400)
.|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 777777777777666643 3455566666666667777777777777766653
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=2.4e-14 Score=113.70 Aligned_cols=96 Identities=10% Similarity=-0.013 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811 47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL 126 (400)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (400)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444444444444444444444432 1133344444444444444444444444444332 22333444444444
Q ss_pred Hhc-CChHHHHHHHHHHHc
Q 015811 127 CRT-GHTIVALNLFKEMTN 144 (400)
Q Consensus 127 ~~~-~~~~~a~~~~~~~~~ 144 (400)
... |++++|+..++++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHc
Confidence 444 444444444444443
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=2.8e-15 Score=120.68 Aligned_cols=128 Identities=12% Similarity=0.075 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC 127 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (400)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444444444444444444444444432 1233444444444444444444444444444432 223334444444444
Q ss_pred hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 015811 128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMK 184 (400)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 184 (400)
..|++++|++.++++.+.. +.+...+..+..++...|++++|...++++.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-------MENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444444444444444332 2233334444444444444444444444443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=2.6e-15 Score=130.70 Aligned_cols=280 Identities=12% Similarity=0.018 Sum_probs=179.8
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc----cC-C
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRS----CF-A 78 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~ 78 (400)
++....+......+...|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +. +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3556677888899999999999999999998864 334 357888999999999999999999987653 11 1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------hH
Q 015811 79 PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE-PN----VITYNTLINGLCRTGH--------------------TI 133 (400)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 133 (400)
....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 23557888899999999999999999988754100 11 3467788888999999 88
Q ss_pred HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hHhHHHHHHHHHhcCCH
Q 015811 134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NPN----VVTYTSLIHGFCHANDW 208 (400)
Q Consensus 134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~ 208 (400)
+|+..+++........+. .+....++..+..++...|++++|...+++..+... .++ ..++..+...+...|++
T Consensus 165 ~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 888888776543110000 112234566777777788888888888777654310 011 12566666667777777
Q ss_pred HHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCchhHHHHHHHHHhCCC-----CCcHHHHHHHHHHHHcCCCh
Q 015811 209 NEAKGLLIEMVDQGVQ-PN----VVSSNVIMNELCKNGKMDNASRLLDLMVQCDV-----RPNAFTYNTLMDGFCLTGKI 278 (400)
Q Consensus 209 ~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 278 (400)
++|...+++..+.... .+ ..++..+...|...|++++|...++...+... .....++..+...|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 7777777666542100 01 23444555555566666666665555443210 00123444455555555555
Q ss_pred HHHHHHHHHHH
Q 015811 279 NRVKELFVSME 289 (400)
Q Consensus 279 ~~a~~~~~~~~ 289 (400)
++|...+++..
T Consensus 324 ~~A~~~~~~al 334 (406)
T 3sf4_A 324 DQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=5.4e-15 Score=128.65 Aligned_cols=305 Identities=11% Similarity=0.026 Sum_probs=217.6
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-C
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN---VVTFTSLIKGLCAESRIVEAAALFTKLKAF----GCE-P 114 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~ 114 (400)
.+....+......+...|++++|...|+++.+...... ..++..+...+...|++++|...+++.... +-. .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44666778888999999999999999999998743211 357888899999999999999999987643 111 1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC--------------------hH
Q 015811 115 NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF--------------------VD 174 (400)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~ 174 (400)
...++..+...+...|++++|+..+++.......... ......++..+...+...|+ ++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456778889999999999999999988764311000 01124478888889999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCch
Q 015811 175 KAKELFLQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ-PN----VVSSNVIMNELCKNGKMD 244 (400)
Q Consensus 175 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~ 244 (400)
+|...+.+.... +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998877543 1111 2346778888889999999999999888754111 11 236777888889999999
Q ss_pred hHHHHHHHHHhCC----CCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHH
Q 015811 245 NASRLLDLMVQCD----VRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESMGC-KHD----DFSYNILINGYCKNKEVE 314 (400)
Q Consensus 245 ~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 314 (400)
+|...++...+.. ..+ ...++..+...+...|++++|...+++..+... ..+ ..++..+..+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999998876431 111 145677888888999999999999888765311 111 456778888888999999
Q ss_pred HHHHHHhhhhhC----CCC-cCHHHHHHHHHHHhccchH
Q 015811 315 EALSLYNELPFK----GIK-PTVVTYNTLFHGLFEIRQA 348 (400)
Q Consensus 315 ~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~ 348 (400)
+|...+++..+. +.. ....++..+...+...|+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999988886643 111 1233455555566655554
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=4.5e-15 Score=129.48 Aligned_cols=275 Identities=15% Similarity=0.037 Sum_probs=156.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV----ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT 159 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+..+...+...|++++|...|+++.+.+ +.+. .++..+...+...|++++|+..+++........+. .+.....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-RLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-chHHHHH
Confidence 3344455555666666666666655542 1122 24555555566666666666666555432100000 1223345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChHhHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYE----NL-NPNVVTYTSLIHGFCHAND-----------------WNEAKGLLIE 217 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 217 (400)
+..+..++...|++++|...+++..+. +. .....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 566666666667777776666665443 10 1123355566666666677 6677666666
Q ss_pred HHHC----CC-CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHHcCCChHHHHHHHHH
Q 015811 218 MVDQ----GV-QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVR-PN----AFTYNTLMDGFCLTGKINRVKELFVS 287 (400)
Q Consensus 218 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 287 (400)
..+. +. ......+..+...+...|++++|...+++..+.... .+ ...+..+...+...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5432 10 111235566666777777777777777666543100 01 22566677777778888888877777
Q ss_pred HHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC----CC-CcCHHHHHHHHHHHhccchHHHHHHHHHH
Q 015811 288 MESMGCK-----HDDFSYNILINGYCKNKEVEEALSLYNELPFK----GI-KPTVVTYNTLFHGLFEIRQAERALKLFVE 357 (400)
Q Consensus 288 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 357 (400)
..+.... ....++..+..+|...|++++|...+++.... +. .....++..+...+...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6543100 11456667777777888888888877776543 10 11133566667777778888888888877
Q ss_pred Hhh
Q 015811 358 MQG 360 (400)
Q Consensus 358 ~~~ 360 (400)
..+
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=7.4e-15 Score=128.12 Aligned_cols=278 Identities=12% Similarity=0.028 Sum_probs=208.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCChh
Q 015811 47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNV----VTFTSLIKGLCAESRIVEAAALFTKLKAF----G-CEPNVI 117 (400)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 117 (400)
..+..+...+...|++++|...|+++++.... +. .++..+...+...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556677888999999999999999987433 32 46788889999999999999999887653 1 122345
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC-----------------hHHHHHHH
Q 015811 118 TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF-----------------VDKAKELF 180 (400)
Q Consensus 118 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 180 (400)
++..+...+...|++++|+..+++........+. .+....++..+..++...|+ +++|.+.+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6778888999999999999999887654210000 12234578888899999999 99999998
Q ss_pred HHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCchhHHHHH
Q 015811 181 LQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ-PN----VVSSNVIMNELCKNGKMDNASRLL 250 (400)
Q Consensus 181 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 250 (400)
++..+. +..+ ...++..+...+...|++++|...+++..+.... .+ ...+..+..+|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887542 1111 2357778889999999999999999988764211 11 226788889999999999999999
Q ss_pred HHHHhCCCC-----CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015811 251 DLMVQCDVR-----PNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC-----KHDDFSYNILINGYCKNKEVEEALSLY 320 (400)
Q Consensus 251 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 320 (400)
+...+.... ....++..+...+...|++++|...+++..+... .....++..+..+|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 887653210 1256778889999999999999999998865310 112347788899999999999999999
Q ss_pred hhhhhC
Q 015811 321 NELPFK 326 (400)
Q Consensus 321 ~~~~~~ 326 (400)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=6.1e-13 Score=116.94 Aligned_cols=305 Identities=9% Similarity=-0.028 Sum_probs=172.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh---hHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811 26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVS---LGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA 102 (400)
Q Consensus 26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
++++|+..|++..+.|. + ..+..+...|...+..+ .+.+.+......| +......+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 44555555555555431 1 14444444444433322 2233333332222 23344445555555553333322
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc----CChHH
Q 015811 103 LFTKLKAFGCEPNVITYNTLINGLCRTG---HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE----GFVDK 175 (400)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 175 (400)
....+.+.-...++..+..|...|...| +.++|++.|++..+.+ +++...+..+...|... +++++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-------~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-------TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-------CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 2222221111233446677777777777 7777888887777765 45555555666666544 67778
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-----CchhHH
Q 015811 176 AKELFLQMKYENLNPNVVTYTSLIHG-F--CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG-----KMDNAS 247 (400)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~ 247 (400)
|.++|++.. . -+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|.
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 888887776 3 244555555555 3 45677888888888777765 4556666666665 44 777787
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHc----CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 015811 248 RLLDLMVQCDVRPNAFTYNTLMDGFCL----TGKINRVKELFVSMESMGCKHDDFSYNILINGYCK----NKEVEEALSL 319 (400)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 319 (400)
..|++.. . -++.....|...|.. ..++++|...|++..+.| +......|...|.. ..++++|..+
T Consensus 308 ~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 7777766 3 345566666666655 337778888888777765 23344455555553 4577788888
Q ss_pred HhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 320 YNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 320 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
|+...+.|.. +.......+......++..+|..+.++..
T Consensus 381 ~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 381 SQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8877776532 33333333333444556666766666544
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=7.8e-15 Score=124.08 Aligned_cols=208 Identities=13% Similarity=0.037 Sum_probs=144.6
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc----c-CCccH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRS----C-FAPNV 81 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 81 (400)
...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. + .+...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3456667788899999999999999998864 234 467888999999999999999999987653 1 12235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCC--------------------hHHHH
Q 015811 82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGC-EPN----VITYNTLINGLCRTGH--------------------TIVAL 136 (400)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 136 (400)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788889999999999999999998765421 112 3367788888889999 88888
Q ss_pred HHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hHhHHHHHHHHHhcCCHHHH
Q 015811 137 NLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NPN----VVTYTSLIHGFCHANDWNEA 211 (400)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a 211 (400)
..+++.......... .+.....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 164 ~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 164 DLYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888776542110000 112234667777778888888888888877654310 001 12455556666666666666
Q ss_pred HHHHHHHHH
Q 015811 212 KGLLIEMVD 220 (400)
Q Consensus 212 ~~~~~~~~~ 220 (400)
...+++..+
T Consensus 243 ~~~~~~al~ 251 (338)
T 3ro2_A 243 SEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=3.4e-13 Score=112.53 Aligned_cols=233 Identities=11% Similarity=0.043 Sum_probs=115.0
Q ss_pred cchHHHHHHHHHcc----CCh----hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------cCCh-------hhHHHH
Q 015811 11 VSSFNILLGCLAKN----KHY----DTVLSLFKRLNSIGLFPDLYTYSILINCFCK-------MGQV-------SLGFVI 68 (400)
Q Consensus 11 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 68 (400)
...|...+....++ ++. ++|+.+|+++.... +.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34555555554433 122 46666666666543 3456666666655542 3554 566666
Q ss_pred HHHHHh-ccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811 69 FGRILR-SCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPN-VI-TYNTLINGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 69 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
|++.++ .. +.+...|..++..+...|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+.
T Consensus 87 ~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 87 YERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 666655 22 224445555666666666666666666666553 232 22 4555555555566666666666665554
Q ss_pred CCcccccccCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 015811 146 NGEIGVVFKPNTVTYSIIIDGLC-KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG-V 223 (400)
Q Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 223 (400)
. +.+...|........ ..|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... .
T Consensus 164 ~-------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 164 A-------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp T-------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred C-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 3 222333332222211 1355555555555554432 1234444455555555555555555555555431 2
Q ss_pred CC--CcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811 224 QP--NVVSSNVIMNELCKNGKMDNASRLLDLMVQ 255 (400)
Q Consensus 224 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (400)
+| ....+..++..+.+.|+.+.|..+++++.+
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 122344444444445555555555544444
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=3.9e-14 Score=122.26 Aligned_cols=302 Identities=9% Similarity=-0.060 Sum_probs=171.1
Q ss_pred HHccCChhHHHHHHHHHHhC--CCCCCHH--hHHHHHHH--HHhcCChhhHH-----------HHHHHHHhccCCcc---
Q 015811 21 LAKNKHYDTVLSLFKRLNSI--GLFPDLY--TYSILINC--FCKMGQVSLGF-----------VIFGRILRSCFAPN--- 80 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~--g~~~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~--- 80 (400)
+.+.+++++|..+++++.+. .+..+.. .|..++.. ..-.++.+.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999998653 2223433 33333322 22234444444 66776654321111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811 81 -VVTFTSLIKGLCAESRIVEAAALFTKLKAFG--CEP---NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK 154 (400)
Q Consensus 81 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 154 (400)
...+......+...|++++|...+++..+.- .+. ...++..+...+...|++++|+..+++........+...+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1112235667788999999999999998641 111 2467888999999999999999999988764311000001
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-C
Q 015811 155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN-PN----VVTYTSLIHGFCHANDWNEAKGLLIEMVDQ----GV-Q 224 (400)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~ 224 (400)
....+++.+..++...|++++|...+++..+.... ++ ..++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12356777888888899999999888887653100 11 135666777777777777777777766652 11 2
Q ss_pred CCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC----CCCcHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhcCCCCCH
Q 015811 225 PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD----VRPNAFTYNTLMDGFCLTGK---INRVKELFVSMESMGCKHDD 297 (400)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~ 297 (400)
....++..+..++...|++++|...+++..+.. -+.....+..+...+...|+ .++|..++++.... +...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHH
Confidence 223445556666666666666666665554321 01111223344444555555 33444443333110 1112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 298 FSYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 298 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
..+..+...|...|++++|...+++..
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 234444455555555555555554443
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=1.4e-14 Score=122.61 Aligned_cols=205 Identities=11% Similarity=0.033 Sum_probs=131.2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChh
Q 015811 47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN----VVTFTSLIKGLCAESRIVEAAALFTKLKAF----GCE-PNVI 117 (400)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 117 (400)
..+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++..+. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44556677889999999999999999987433 3 467888999999999999999999887643 111 2245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC--------------------hHHHH
Q 015811 118 TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF--------------------VDKAK 177 (400)
Q Consensus 118 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~ 177 (400)
++..+...+...|++++|...+++........+. ......++..+...+...|+ +++|.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788889999999999999999987654310000 01113467778888888888 77777
Q ss_pred HHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCchhHH
Q 015811 178 ELFLQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ-PN----VVSSNVIMNELCKNGKMDNAS 247 (400)
Q Consensus 178 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~ 247 (400)
+.+++.... +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777765432 1111 1234555556666666666666666655432100 00 113344444444455555555
Q ss_pred HHHHHH
Q 015811 248 RLLDLM 253 (400)
Q Consensus 248 ~~~~~~ 253 (400)
..++..
T Consensus 244 ~~~~~a 249 (338)
T 3ro2_A 244 EYYKKT 249 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=8.3e-14 Score=106.91 Aligned_cols=168 Identities=11% Similarity=0.028 Sum_probs=124.5
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
.++.+|..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+........ .+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 356677888888888888888888888877765 44677777888888888888888888887777643 3566666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
..+...++++.|...+.+..+.. +.+...+..+...+...|++++|++.|++..+.. +.+..+|..+..++.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-------PGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-------chhhhHHHHHHHHHH
Confidence 77777888888888887777664 4456677777777778888888888887777654 456677777777788
Q ss_pred hcCChHHHHHHHHHHHHc
Q 015811 169 KEGFVDKAKELFLQMKYE 186 (400)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~ 186 (400)
+.|++++|++.|++..+.
T Consensus 153 ~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHhC
Confidence 888888888888777764
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=1.1e-13 Score=119.41 Aligned_cols=300 Identities=8% Similarity=-0.036 Sum_probs=209.1
Q ss_pred HHhcCChhhHHHHHHHHHhcc--C--CccHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCChhh
Q 015811 56 FCKMGQVSLGFVIFGRILRSC--F--APNVVTFTSLIKG--LCAESRIVEAA-----------ALFTKLKAFGCEPNVIT 118 (400)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 118 (400)
+.+.+++++|..+++++.+.- . .++...|-.++.. ..-.++.+.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 456899999999999987642 1 2333344444332 11223344444 666665543 112222
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-
Q 015811 119 ------YNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NP- 190 (400)
Q Consensus 119 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~- 190 (400)
+......+...|++++|+..+++........+. ......++..+..++...|++++|...+.+..+... .+
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 222556778899999999999999875211000 011346788899999999999999999999876411 11
Q ss_pred ----ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCchhHHHHHHHHHh-----C
Q 015811 191 ----NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ-PN----VVSSNVIMNELCKNGKMDNASRLLDLMVQ-----C 256 (400)
Q Consensus 191 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~ 256 (400)
...++..+...|...|++++|...+++..+.... ++ ..++..+..+|...|++++|...+++..+ .
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 1356788889999999999999999988754111 11 23678888999999999999999988876 3
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHhhhhhCCCC
Q 015811 257 DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESM----GCKHDDFSYNILINGYCKNKE---VEEALSLYNELPFKGIK 329 (400)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~ 329 (400)
..+....++..+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++.... .
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~ 336 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--A 336 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--H
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--H
Confidence 32344677888999999999999999999988653 111122335678888888998 88888888776321 2
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 330 PTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
.....+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2344667788899999999999999998764
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=1.2e-12 Score=109.20 Aligned_cols=218 Identities=9% Similarity=-0.022 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCh-------HHHHHHHHHHHcCCCcccccccCChhhHHHH
Q 015811 98 VEAAALFTKLKAFGCEPNVITYNTLINGLC-------RTGHT-------IVALNLFKEMTNGNGEIGVVFKPNTVTYSII 163 (400)
Q Consensus 98 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (400)
++|..+|++..+.. +.++..|..++..+. ..|+. ++|..+|++....- .+.+...|..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~------~p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh------CcccHHHHHHH
Confidence 57777888877653 456677777776665 35775 89999999998831 14456788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-hH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hc
Q 015811 164 IDGLCKEGFVDKAKELFLQMKYENLNPN-VV-TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC-KN 240 (400)
Q Consensus 164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 240 (400)
+..+...|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999875 343 33 78888888888899999999999988764 233333333222211 26
Q ss_pred CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhcCCHHHHH
Q 015811 241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG-CKH--DDFSYNILINGYCKNKEVEEAL 317 (400)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~ 317 (400)
|++++|..+|+...+.. +.+...+..++..+...|++++|..+|++..... .+| ....|..++....+.|+.+.|.
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888777653 3456777777777788888888888888887752 233 4567777777777788888888
Q ss_pred HHHhhhhhC
Q 015811 318 SLYNELPFK 326 (400)
Q Consensus 318 ~~~~~~~~~ 326 (400)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877764
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=9e-14 Score=123.01 Aligned_cols=214 Identities=10% Similarity=-0.088 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHH
Q 015811 97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT-IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDK 175 (400)
Q Consensus 97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (400)
++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..++...|++++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-------PELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHH
Confidence 455666666555442 34566777777777778888 88888888777654 4456777777778888888888
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc------
Q 015811 176 AKELFLQMKYENLNPNVVTYTSLIHGFCHA---------NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN------ 240 (400)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 240 (400)
|.+.|++..+. .|+...+..+...+... |++++|...+++..+.. +.+...+..+..+|...
T Consensus 156 A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 156 AHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcc
Confidence 88888877765 35567777777777777 77777777777777654 33556667777777776
Q ss_pred --CCchhHHHHHHHHHhCCCC---CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 015811 241 --GKMDNASRLLDLMVQCDVR---PNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEE 315 (400)
Q Consensus 241 --~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 315 (400)
|++++|...|+...+.. + .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++
T Consensus 233 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776653 2 356677777777777777777777777776654 4456666677777777777777
Q ss_pred HHHHHhhh
Q 015811 316 ALSLYNEL 323 (400)
Q Consensus 316 A~~~~~~~ 323 (400)
|...+.++
T Consensus 311 Ai~~~~~~ 318 (474)
T 4abn_A 311 LLESKGKT 318 (474)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccc
Confidence 77665544
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=3.9e-13 Score=103.11 Aligned_cols=167 Identities=17% Similarity=0.061 Sum_probs=115.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 015811 156 NTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMN 235 (400)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 235 (400)
++..|..+..++...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45667777777777777777777777777653 2355667777777777777777777777776653 334455666666
Q ss_pred HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 015811 236 ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEE 315 (400)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 315 (400)
.+...++++.+...+....+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6777777777777777766654 4456666677777777777777777777776664 4456667777777777777777
Q ss_pred HHHHHhhhhhC
Q 015811 316 ALSLYNELPFK 326 (400)
Q Consensus 316 A~~~~~~~~~~ 326 (400)
|...|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777776654
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=1.7e-11 Score=111.62 Aligned_cols=377 Identities=10% Similarity=0.003 Sum_probs=240.6
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---hhhHHHHHHHHHhccC-CccHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ---VSLGFVIFGRILRSCF-APNVV 82 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~ 82 (400)
.|-|..+|..++..+.+.+.++.+..+|+++...- +.....|...+..-.+.++ ++.+.++|++.+.... +|++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 46789999999999999999999999999998863 6678899999999888888 9999999999998741 37888
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CCC-hhhHHHHHHHHHh---------cCChHHHHHHHHHH
Q 015811 83 TFTSLIKGLCAESRI--------VEAAALFTKLKA-FGC-EPN-VITYNTLINGLCR---------TGHTIVALNLFKEM 142 (400)
Q Consensus 83 ~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 142 (400)
.|...+....+.++. +...++|+.... .|. .++ ...|...+..... .++.+.+..+|+++
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 898888766655543 334577777664 365 443 4567766654432 23456677777777
Q ss_pred HcCCCcccccccCChhhH--------------------------------------------------------------
Q 015811 143 TNGNGEIGVVFKPNTVTY-------------------------------------------------------------- 160 (400)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 160 (400)
..... ..-..+|
T Consensus 221 L~iP~------~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~ 294 (679)
T 4e6h_A 221 LCQPM------DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKP 294 (679)
T ss_dssp TTSCC------SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCT
T ss_pred HhCcc------HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCC
Confidence 64220 0001111
Q ss_pred -----------HHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 015811 161 -----------SIIIDGLCKEG-------FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAK-GLLIEMVDQ 221 (400)
Q Consensus 161 -----------~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~ 221 (400)
...+..--..+ ..+.+..+|+++... .+.....|...+..+.+.|+.++|. .+++.....
T Consensus 295 ~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~ 373 (679)
T 4e6h_A 295 NEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373 (679)
T ss_dssp TCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 11111100000 011223334444333 1223445555555556667777775 888887764
Q ss_pred CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCC---------CC------------cHHHHHHHHHHHHcCCChHH
Q 015811 222 GVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDV---------RP------------NAFTYNTLMDGFCLTGKINR 280 (400)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~ 280 (400)
.+.+...+...+....+.|+++.|..+|+.+.+... .| ...+|...+....+.|+.+.
T Consensus 374 -~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~ 452 (679)
T 4e6h_A 374 -IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAA 452 (679)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred -CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHH
Confidence 344444556667777788888888888887765310 12 12356666676677788888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811 281 VKELFVSMESMGCKHDDFSYNILINGYCKN-KEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
|..+|.++.+.-.......|...+..-.+. ++++.|..+|+...+. .+-+...|..++......|+.+.|..+|++..
T Consensus 453 AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 453 SRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 888888887651122233343333333333 4588888888888775 23355666677777777888888888888887
Q ss_pred hCCCCC--ChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811 360 GNDVAA--DTCTYRTFIDGLCVRPQVRFTYARRKGN 393 (400)
Q Consensus 360 ~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (400)
.....+ ....|...++--...|+.+.+..+.+++
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 654322 2346777777777888888877776654
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=1.3e-13 Score=121.95 Aligned_cols=215 Identities=12% Similarity=-0.018 Sum_probs=184.0
Q ss_pred ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 015811 131 HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFV-DKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWN 209 (400)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (400)
..++++..++...... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|+++
T Consensus 83 ~~~~al~~l~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3667778888776653 55788899999999999999 99999999998874 335788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---------CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC-----
Q 015811 210 EAKGLLIEMVDQGVQPNVVSSNVIMNELCKN---------GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT----- 275 (400)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 275 (400)
+|...+++..+.. |+...+..+..++... |++++|...+++..+.. +.+...+..+..+|...
T Consensus 155 ~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 155 SAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999874 5678888889999999 99999999999998875 55688899999999888
Q ss_pred ---CChHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHH
Q 015811 276 ---GKINRVKELFVSMESMGCK---HDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAE 349 (400)
Q Consensus 276 ---~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 349 (400)
|++++|...|++..+.. + .+...|..+..+|...|++++|...|++..+... -+...+..+...+...|+++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 3 5888999999999999999999999999987632 25667888888999999999
Q ss_pred HHHHHHHHH
Q 015811 350 RALKLFVEM 358 (400)
Q Consensus 350 ~a~~~~~~~ 358 (400)
+|++.+.++
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 998766543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=8.2e-14 Score=116.51 Aligned_cols=249 Identities=11% Similarity=0.020 Sum_probs=174.7
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSI-------GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS---- 75 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 75 (400)
.|.+..++..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+++..+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999998763 22334677889999999999999999999998864
Q ss_pred --c-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811 76 --C-FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF------GC-EPNVITYNTLINGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 76 --~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
+ .+....++..+...+...|++++|...+++..+. +. +....++..+...+...|++++|+..++++...
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1334667888999999999999999999998764 21 223456788889999999999999999998764
Q ss_pred CCccc-ccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCChHh-------HHHHHHHHHhcCCHHH
Q 015811 146 NGEIG-VVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE-------NLNPNVVT-------YTSLIHGFCHANDWNE 210 (400)
Q Consensus 146 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~-------~~~l~~~~~~~~~~~~ 210 (400)
..... ...+....++..+..++...|++++|.+.++++.+. ...+.... +..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 10000 001233467888899999999999999999998753 11122211 1222222334455566
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811 211 AKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC 256 (400)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (400)
+...+....... +....++..+..+|...|++++|...+++..+.
T Consensus 263 a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 263 YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666666665432 335567888999999999999999999988763
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=9.5e-13 Score=113.32 Aligned_cols=313 Identities=10% Similarity=-0.045 Sum_probs=185.5
Q ss_pred CCcchHHHHHHHH--HccCChhHHHHHHHHHHhC--CCCCCH--HhHHHHHHH--HHhcCChhhHH---------HHHHH
Q 015811 9 PPVSSFNILLGCL--AKNKHYDTVLSLFKRLNSI--GLFPDL--YTYSILINC--FCKMGQVSLGF---------VIFGR 71 (400)
Q Consensus 9 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--g~~~~~--~~~~~l~~~--~~~~~~~~~a~---------~~~~~ 71 (400)
|+..+=+.|-..| ...+++++|..+++++.+. .+..|. ..|..++.. ..-.+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4455555566666 7899999999999997552 222333 333444332 11123333333 66666
Q ss_pred HHhccCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811 72 ILRSCFAPNV----VTFTSLIKGLCAESRIVEAAALFTKLKAFGC-EPN----VITYNTLINGLCRTGHTIVALNLFKEM 142 (400)
Q Consensus 72 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 142 (400)
+.....+.+. ..+......+...|++++|...|++..+... .++ ..++..+...+...|++++|+..+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6543211111 1233345567789999999999999886421 122 356788889999999999999999987
Q ss_pred HcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811 143 TNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIE 217 (400)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (400)
................+++.+..++...|++++|.+.+++..+. +..+ ...++..+..++...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 65421100000112456778888899999999999999887653 1111 124566677777788888888888877
Q ss_pred HHH-----CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC----CCCcHHHHHHHHHHHHcCCC---hHHHHHHH
Q 015811 218 MVD-----QGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD----VRPNAFTYNTLMDGFCLTGK---INRVKELF 285 (400)
Q Consensus 218 ~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 285 (400)
..+ .. +....++..+..++.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|...+
T Consensus 248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 765 22 2224556666667777777777777776665431 11122334444455555555 44555444
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 286 VSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
+.... .+.....+..+...|...|++++|...|++..
T Consensus 327 ~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 327 EKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44211 01122344455566666666666666666554
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.55 E-value=2.7e-13 Score=124.78 Aligned_cols=171 Identities=11% Similarity=0.046 Sum_probs=152.6
Q ss_pred CCCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHH
Q 015811 5 HPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTF 84 (400)
Q Consensus 5 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 84 (400)
.+.|.++.+|+.+...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++.++... -+...|
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~ 80 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAY 80 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 3467788999999999999999999999999998875 45789999999999999999999999999999753 368899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811 85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII 164 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 164 (400)
..+..++...|++++|++.|++..+.. +-+..+|+.+..++...|++++|+..|++..+.. +-+...+..+.
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~ 152 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLA 152 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhh
Confidence 999999999999999999999999875 4567899999999999999999999999999865 55678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 015811 165 DGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~ 185 (400)
.++...|++++|.+.++++.+
T Consensus 153 ~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 153 HCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHTTCCTTHHHHHHHHHH
T ss_pred hHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999888764
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=5.5e-14 Score=117.57 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=137.5
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRS-------CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF------G 111 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 111 (400)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677888999999999999999999999873 23445677888999999999999999999998764 2
Q ss_pred C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcc-cccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 015811 112 C-EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEI-GVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE--- 186 (400)
Q Consensus 112 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 186 (400)
- +....++..+...+...|++++|+..++++....... +...+.....+..+..++...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 2235678888999999999999999999887642000 0001334567888889999999999999999998764
Q ss_pred ---CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 187 ---NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 187 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (400)
+..| ...++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 235677888889999999999999988875
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=1.2e-12 Score=100.41 Aligned_cols=167 Identities=18% Similarity=0.042 Sum_probs=139.9
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
....|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34667788888999999999999999887664 4577888889999999999999999999988864 346778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHH
Confidence 9999999999999999988774 5567788888889999999999999999988764 4567788888888899
Q ss_pred cCChHHHHHHHHHHHHc
Q 015811 170 EGFVDKAKELFLQMKYE 186 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~ 186 (400)
.|++++|...++.+.+.
T Consensus 157 ~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 157 MGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 99999999998887764
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.52 E-value=1.6e-11 Score=105.46 Aligned_cols=275 Identities=11% Similarity=-0.009 Sum_probs=172.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhhHHHHHHHHHhccCC-cc----HHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLY----TYSILINCFCKMGQVSLGFVIFGRILRSCFA-PN----VVT 83 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 83 (400)
........+...|++++|...+++........+.. ++..+...+...|+++.|...+++..+.... .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445566778999999999999987754222322 4666777888899999999999988763211 11 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKLKAF----GCE--P-NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN 156 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (400)
+..+...+...|++++|...+++..+. +.+ | ...++..+...+...|++++|...+++........+. +..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~ 173 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--QQQ 173 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--GGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc--HHH
Confidence 566788889999999999999887753 211 2 2345666778889999999999999988765422110 112
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---c
Q 015811 157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV-VTYT-----SLIHGFCHANDWNEAKGLLIEMVDQGVQPN---V 227 (400)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 227 (400)
...+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 345677778888899999999998887654211111 1111 223346677888888888777654321111 1
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHhC----CCCCcH-HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811 228 VSSNVIMNELCKNGKMDNASRLLDLMVQC----DVRPNA-FTYNTLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
..+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12344555666666666666666555332 111111 133444455555555555555555554
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.52 E-value=3.3e-11 Score=103.49 Aligned_cols=277 Identities=12% Similarity=-0.013 Sum_probs=192.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhH
Q 015811 49 YSILINCFCKMGQVSLGFVIFGRILRSCFAPNV----VTFTSLIKGLCAESRIVEAAALFTKLKAFGC-EPN----VITY 119 (400)
Q Consensus 49 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 119 (400)
.......+...|++++|...+++........+. ..+..+...+...|++++|...+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455667899999999999998876432222 2466677888899999999999998875311 112 1235
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--ChHh
Q 015811 120 NTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP-NTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN--P--NVVT 194 (400)
Q Consensus 120 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~ 194 (400)
..+...+...|++++|...+++........+....| ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667788899999999999999876543110000002 2345666788899999999999999998765321 1 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccHH-----HHHHHHHhcCCchhHHHHHHHHHhCCCCC---cHHHH
Q 015811 195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV-VSSN-----VIMNELCKNGKMDNASRLLDLMVQCDVRP---NAFTY 265 (400)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 265 (400)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+.........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 777888889999999999999988764212221 1121 22344778999999999998887643211 12345
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811 266 NTLMDGFCLTGKINRVKELFVSMESM----GCKHDD-FSYNILINGYCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 266 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 325 (400)
..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67778888999999999999887542 211122 2566677888889999999999888765
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=7.2e-12 Score=107.82 Aligned_cols=314 Identities=8% Similarity=-0.024 Sum_probs=211.2
Q ss_pred CCCHHhHHHHHHHH--HhcCChhhHHHHHHHHHhcc--C--CccHHHHHHHHHHH--HhcCCHH---------HHHHHHH
Q 015811 43 FPDLYTYSILINCF--CKMGQVSLGFVIFGRILRSC--F--APNVVTFTSLIKGL--CAESRIV---------EAAALFT 105 (400)
Q Consensus 43 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~--~~~~~~~---------~a~~~~~ 105 (400)
.|+..+-..+-.-| ...+++++|..+++++.+.. . .++...|-.++..- .-.+... ...+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555555555555 78899999999999886632 1 22333444444321 1111111 1225555
Q ss_pred HHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHH
Q 015811 106 KLKAFGCEPNV----ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFL 181 (400)
Q Consensus 106 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 181 (400)
.+.....+.+. ..+......+...|++++|+..+++........+. .+....++..+..++...|+++.|...+.
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 55432101111 12233455667899999999999998875321000 11234578888999999999999999999
Q ss_pred HHHHcC--C---CC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCcccHHHHHHHHHhcCCchhHHHHH
Q 015811 182 QMKYEN--L---NP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ----GVQ-PNVVSSNVIMNELCKNGKMDNASRLL 250 (400)
Q Consensus 182 ~~~~~~--~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 250 (400)
+..+.. . .+ ...++..+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 887531 1 11 2456778889999999999999999988763 111 11346777888999999999999999
Q ss_pred HHHHh-----CCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCC---HHHHHH
Q 015811 251 DLMVQ-----CDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG----CKHDDFSYNILINGYCKNKE---VEEALS 318 (400)
Q Consensus 251 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~A~~ 318 (400)
++..+ .. +....++..+...+...|++++|...+++..+.. -+.....+..+...+...++ +.+|+.
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 98876 43 3346778889999999999999999999987642 12223456666677778888 888888
Q ss_pred HHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 319 LYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
.+++.... ......+..+...|...|++++|...|++..+
T Consensus 325 ~~~~~~~~--~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKKNLH--AYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCh--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88764321 22234566778889999999999999998764
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=1.1e-11 Score=98.65 Aligned_cols=198 Identities=13% Similarity=0.007 Sum_probs=156.9
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
+.++..|......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.+++..+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 45668899999999999999999999999998764378888888999999999999999999999987533 77889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC--Chh
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNV-------ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP--NTV 158 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~ 158 (400)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|++..+.. +. +..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 154 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-------SKKWKTD 154 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-------CHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-------CCcccHH
Confidence 999999999999999999999874 3344 457788888999999999999999998864 33 456
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015811 159 TYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG 222 (400)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 222 (400)
.+..+..++...| ...++.+...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7777777776544 34455555443 22344444333 234567899999999998864
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=7.7e-10 Score=100.86 Aligned_cols=223 Identities=9% Similarity=-0.046 Sum_probs=166.2
Q ss_pred cCChhhHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------
Q 015811 154 KPNTVTYSIIIDGLCKEGFVDKAK-ELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGV--------- 223 (400)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------- 223 (400)
+-....|...+..+...|+.++|. ++|+..... .+.+...|...+....+.|+++.|..+|+.++....
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 345566667777777889988996 999999875 344666777888888899999999999999886410
Q ss_pred CCC------------cccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC-CChHHHHHHHHHHHh
Q 015811 224 QPN------------VVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT-GKINRVKELFVSMES 290 (400)
Q Consensus 224 ~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 290 (400)
.|+ ...|...+....+.|..+.|..+|..+.+.........|...+..-.+. ++.+.|..+|+...+
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 121 2356667777778899999999999998861122344444444333344 458999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc--CHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChh
Q 015811 291 MGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP--TVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTC 368 (400)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 368 (400)
. .+.+...|...+......|+.+.|..+|++.......+ ....|..++..-...|+.+.+.++.+++.+. .|+..
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~ 575 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVN 575 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCC
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCc
Confidence 6 35577788888888889999999999999998763321 3457888888888899999999999999974 46666
Q ss_pred hHHHHHHHhhcC
Q 015811 369 TYRTFIDGLCVR 380 (400)
Q Consensus 369 ~~~~l~~~~~~~ 380 (400)
....+++-|.-.
T Consensus 576 ~~~~f~~ry~~~ 587 (679)
T 4e6h_A 576 KLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHHHHTCBT
T ss_pred HHHHHHHHhcCC
Confidence 666666665433
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=3.2e-11 Score=95.87 Aligned_cols=204 Identities=10% Similarity=-0.049 Sum_probs=156.5
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 015811 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVI 233 (400)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 233 (400)
+.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 456788888999999999999999999999987643677788889999999999999999999999874 3366788889
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 015811 234 MNELCKNGKMDNASRLLDLMVQCDVRPNA-------FTYNTLMDGFCLTGKINRVKELFVSMESMGCKH--DDFSYNILI 304 (400)
Q Consensus 234 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 304 (400)
..++...|++++|...++...+.. +.+. ..+..+...+...|++++|...++++.+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 999999999999999999998864 3344 457788888899999999999999998874 33 356777788
Q ss_pred HHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhH
Q 015811 305 NGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTY 370 (400)
Q Consensus 305 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 370 (400)
.+|...|+ .+++++...+ ..+...+.... ....+.+++|+..+++..+. .|+....
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~ 216 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEI 216 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHH
Confidence 88765543 3444444432 22344444333 33457789999999998874 4554433
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=1.6e-11 Score=94.03 Aligned_cols=165 Identities=14% Similarity=0.014 Sum_probs=116.2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811 47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL 126 (400)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (400)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456666777777788888888887776653 2356667777777777888888888887777663 44566677777777
Q ss_pred HhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015811 127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAN 206 (400)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (400)
...|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcC-------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 77777777777777776653 4456667777777777777777777777776653 234566667777777777
Q ss_pred CHHHHHHHHHHHHHC
Q 015811 207 DWNEAKGLLIEMVDQ 221 (400)
Q Consensus 207 ~~~~a~~~~~~~~~~ 221 (400)
++++|...++.+.+.
T Consensus 159 ~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 159 RHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 777777777776654
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=5.9e-12 Score=115.95 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=147.9
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+..+|+.+..++.+.|++++|++.|++.++... -+..++..+..+|.+.|++++|+..|++.++.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 467899999999999999999999999999753 368889999999999999999999999999875 456789999999
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811 125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH 204 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (400)
++...|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.. +-+...+..+..++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 9999999999999999998865 5567899999999999999999999999999874 2357889999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 015811 205 ANDWNEAKGLLIEMVD 220 (400)
Q Consensus 205 ~~~~~~a~~~~~~~~~ 220 (400)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998887764
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.40 E-value=7.5e-12 Score=102.89 Aligned_cols=234 Identities=11% Similarity=-0.020 Sum_probs=160.2
Q ss_pred HccCChhHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc------cC-CccHHHHHHH
Q 015811 22 AKNKHYDTVLSLFKRLNSI-------GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS------CF-APNVVTFTSL 87 (400)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 87 (400)
...|++++|+.+|++..+. ..+....++..+...+...|++++|...++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888776542 21234678899999999999999999999998864 11 2346678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccc-ccccCChhh
Q 015811 88 IKGLCAESRIVEAAALFTKLKAF-----G--CEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIG-VVFKPNTVT 159 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (400)
..++...|++++|...+++..+. + .+....++..+...+...|++++|+..+++......... ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 122356788899999999999999999999876410000 001234567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCh-HhHHHHHHHHHhcCCHHH------HHHHHHHHHHCCCCC
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYE-------NLNPNV-VTYTSLIHGFCHANDWNE------AKGLLIEMVDQGVQP 225 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~ 225 (400)
+..+..++...|++++|...++++.+. ...+.. ..+..+.......+.... +...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998753 122222 233333333333332222 2222221111 1122
Q ss_pred CcccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811 226 NVVSSNVIMNELCKNGKMDNASRLLDLMVQC 256 (400)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (400)
...++..+..+|...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456788899999999999999999988763
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.39 E-value=2.5e-11 Score=99.75 Aligned_cols=165 Identities=13% Similarity=0.037 Sum_probs=124.0
Q ss_pred HhcCChhhHHHHHHHHHhc-------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhhHHHH
Q 015811 57 CKMGQVSLGFVIFGRILRS-------CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF------GC-EPNVITYNTL 122 (400)
Q Consensus 57 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 122 (400)
...|++++|...+++.++. ..+....++..+...+...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888877777652 22335677889999999999999999999998764 21 2235678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCccccc-ccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-ChHh
Q 015811 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVV-FKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE------NLNP-NVVT 194 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 194 (400)
...+...|++++|+..+++........... .+....++..+..++...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999887641000000 1334677888999999999999999999998765 1122 3467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 195 YTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
+..+...+...|++++|...+++..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888999999999999999888753
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.37 E-value=6.3e-10 Score=90.24 Aligned_cols=246 Identities=10% Similarity=0.013 Sum_probs=154.6
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH
Q 015811 18 LGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI 97 (400)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (400)
++...-.|++..++.-.. +.........-..+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 455556889988887333 222122334444556788888877642 12234443444443333 322
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHH
Q 015811 98 VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAK 177 (400)
Q Consensus 98 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 177 (400)
|+..|++..+.+ +++..++..+..++...|++++|++++.+....+. ..-+...+...+.++.+.|+.+.|.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 677777776654 45555666777888888888888888888766541 0135667777888888888888888
Q ss_pred HHHHHHHHcCCCC-----ChHhHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811 178 ELFLQMKYENLNP-----NVVTYTSLIHGFC--HAN--DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR 248 (400)
Q Consensus 178 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 248 (400)
+.+++|.+. .| +..+...++.++. ..| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+
T Consensus 157 k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 157 TIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 888888765 34 2455555555532 223 788888888887654 3442333444557788888888888
Q ss_pred HHHHHHhCC---------CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811 249 LLDLMVQCD---------VRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG 292 (400)
Q Consensus 249 ~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (400)
.++.+.+.. -+-++.++..++......|+ .|.++++++.+..
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 887665421 13356666555555555665 7778888887764
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.34 E-value=1.9e-10 Score=93.43 Aligned_cols=174 Identities=9% Similarity=-0.052 Sum_probs=138.7
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--ccH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PNV 81 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~ 81 (400)
.|.++..+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+++++..+. ...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 45667888889999999999999999999998864 334 678899999999999999999999999986431 234
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCChhhH-----------------HHHHHHHHhcCChHHHH
Q 015811 82 VTFTSLIKGLCA--------ESRIVEAAALFTKLKAFGCEPNVITY-----------------NTLINGLCRTGHTIVAL 136 (400)
Q Consensus 82 ~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~ 136 (400)
..+..+..++.. .|++++|...|+++.+.. +.+.... ..+...|...|++++|+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 567778888888 999999999999999874 2233444 45678899999999999
Q ss_pred HHHHHHHcCCCcccccccCChhhHHHHHHHHHhc----------CChHHHHHHHHHHHHc
Q 015811 137 NLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE----------GFVDKAKELFLQMKYE 186 (400)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 186 (400)
..|+++....+. .+.....+..+..++... |++++|...|+++.+.
T Consensus 169 ~~~~~~l~~~p~----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 169 VTYEAVFDAYPD----TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHCTT----STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC----CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999876421 011345677777888766 8889999999998876
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=3.7e-10 Score=93.29 Aligned_cols=198 Identities=9% Similarity=-0.081 Sum_probs=98.9
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChHhHHHHH
Q 015811 125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL---NP--NVVTYTSLI 199 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 199 (400)
.|...|++++|+..|.+........+. ......+|+.+..+|...|++++|+..+++..+... .+ ...++..+.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666655432100000 011134566666666666777777666666554210 00 023455555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHCCCCC-C----cccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH------HHHHH
Q 015811 200 HGFCHA-NDWNEAKGLLIEMVDQGVQP-N----VVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA------FTYNT 267 (400)
Q Consensus 200 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ 267 (400)
..|... |++++|+..+++..+..... + ..++..+...+...|++++|...++...+....... ..+..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 666664 66666666666655431000 0 233555556666666666666666666554322111 13445
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHH--hcCCHHHHHHHHhhhhh
Q 015811 268 LMDGFCLTGKINRVKELFVSMESMGCKHD------DFSYNILINGYC--KNKEVEEALSLYNELPF 325 (400)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~ 325 (400)
+..++...|++++|...+++..+.. |+ ...+..++.++. ..+++++|+..|+++..
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 5555666666666666666665432 11 112233444443 34556666666666543
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.30 E-value=8.2e-11 Score=108.82 Aligned_cols=172 Identities=8% Similarity=-0.094 Sum_probs=111.0
Q ss_pred HccCChhHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHh
Q 015811 22 AKNKHYDTVLSLFKRLN--------SIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCA 93 (400)
Q Consensus 22 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (400)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.|+++++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777766 332 3355666677777777777777777777777654 2256666777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCCh
Q 015811 94 ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFV 173 (400)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (400)
.|++++|...|++..+.. +.+...+..+..++...|++++ +..|++..+.. +.+...|..+..++.+.|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCH
Confidence 777777777777777664 3355666677777777777777 77777776654 44556677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcC
Q 015811 174 DKAKELFLQMKYENLNPN-VVTYTSLIHGFCHAN 206 (400)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 206 (400)
++|.+.|+++.+. .|+ ...+..+..++...+
T Consensus 551 ~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 551 VGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 7777777766654 233 345555555554433
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=1.6e-10 Score=93.86 Aligned_cols=215 Identities=9% Similarity=-0.020 Sum_probs=133.5
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCcc
Q 015811 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPN---VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ--PNVV 228 (400)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 228 (400)
+.+...+......+.+.|++++|...|+.+.+... .+ ...+..+..++.+.|++++|...++.+.+.... ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44556677777788888888888888888877532 12 456777778888888888888888888875311 1133
Q ss_pred cHHHHHHHHHh--------cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHH
Q 015811 229 SSNVIMNELCK--------NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSY 300 (400)
Q Consensus 229 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 300 (400)
.+..+..++.. .|++++|...|+.+.+.. +.+......+.. +..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 45566667777 778888888887777653 222222211111 0000000 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhCCCC-c-CHHHHHHHHHHHhcc----------chHHHHHHHHHHHhhCCCCCCh-
Q 015811 301 NILINGYCKNKEVEEALSLYNELPFKGIK-P-TVVTYNTLFHGLFEI----------RQAERALKLFVEMQGNDVAADT- 367 (400)
Q Consensus 301 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~- 367 (400)
..+..+|...|++++|...|+++.+.... + ....+..+..++... |++++|...|+++.+. .|+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 56677888888888888888888765211 1 234566666677655 8888888888888763 3443
Q ss_pred ---hhHHHHHHHhhcCCcchhhHhhh
Q 015811 368 ---CTYRTFIDGLCVRPQVRFTYARR 390 (400)
Q Consensus 368 ---~~~~~l~~~~~~~g~~~~a~~~~ 390 (400)
.....+-..+...++++++..+.
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 23444555555666666554443
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.29 E-value=3e-10 Score=81.72 Aligned_cols=131 Identities=13% Similarity=0.163 Sum_probs=115.8
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL 91 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
.+|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 467888999999999999999999998765 4578889999999999999999999999998875 34677888899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 145 (400)
...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++...
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999998875 456778888999999999999999999998764
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=1.4e-09 Score=88.23 Aligned_cols=179 Identities=9% Similarity=-0.044 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCCHHHHHH
Q 015811 135 ALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NPNVVTYTSLIHGFCHANDWNEAKG 213 (400)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 213 (400)
|+..|++....+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+
T Consensus 85 a~~~l~~l~~~~-------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDK-------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTS-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 455555555432 23344445566666666777777776666654432 1244555666666666677777777
Q ss_pred HHHHHHHCCCCC-----CcccHHHHHHH--HHhcC--CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHH
Q 015811 214 LLIEMVDQGVQP-----NVVSSNVIMNE--LCKNG--KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKEL 284 (400)
Q Consensus 214 ~~~~~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 284 (400)
.+++|.+. .| +..+...++.+ ....| ++..|..+|+++.+. .|+......++.++...|++++|...
T Consensus 158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 77666554 33 23444444444 22223 666666666666543 23322222333356666666666666
Q ss_pred HHHHHhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 285 FVSMESMG---------CKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 285 ~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
++.+.+.. -+.++.++..++......|+ +|.++++++.+.
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 66554320 02345555444444444454 566666666654
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=1.1e-10 Score=88.58 Aligned_cols=169 Identities=13% Similarity=0.021 Sum_probs=129.5
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
|.+...+......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+..+ +...+..+
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~ 79 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLI 79 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHH
Confidence 3445677788889999999999999999987654 45788999999999999999999999999887643 44433332
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHH
Q 015811 88 IKG-LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDG 166 (400)
Q Consensus 88 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (400)
... +...+....|...+++..+.. +.+...+..+...+...|++++|+..|+++....+ -..+...+..+..+
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~a~~~l~~~ 153 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDI 153 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TTTTTHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----ccChHHHHHHHHHH
Confidence 222 122223335788888888774 44678889999999999999999999999988652 11235688899999
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 015811 167 LCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~ 185 (400)
+...|+.++|...|++...
T Consensus 154 ~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 154 LSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHH
Confidence 9999999999999987653
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.26 E-value=5.5e-10 Score=87.19 Aligned_cols=138 Identities=12% Similarity=-0.003 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 015811 232 VIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNK 311 (400)
Q Consensus 232 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 311 (400)
.+..+|.+.|++++|...++...+.. +-+...+..+..++...|++++|...|+++.+.. +.+...+..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 37778888888888888888888765 4567788888888888888888888888888875 556778888887776554
Q ss_pred C--HHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015811 312 E--VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFID 375 (400)
Q Consensus 312 ~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (400)
+ .+.+...++..... .|....+.....++...|++++|+..|++..+ +.|+......+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 3 44555666655421 22223333445556667888889988888886 4566655444433
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=5.7e-10 Score=103.24 Aligned_cols=186 Identities=10% Similarity=0.005 Sum_probs=153.7
Q ss_pred HhcCChHHHHHHHHHHH--------cCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 015811 127 CRTGHTIVALNLFKEMT--------NGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSL 198 (400)
Q Consensus 127 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 198 (400)
...|++++|++.+++.. ... +.+...+..+..++...|++++|+..|+++.+.. +.+...+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHH
Confidence 77899999999999998 432 5567889999999999999999999999998864 3367888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh
Q 015811 199 IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI 278 (400)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 278 (400)
..++...|++++|...|++..+.. +.+...+..+..++.+.|++++ ...|+++.+.+ +.+...+..+..++...|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999875 4467788899999999999999 99999998876 55678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHhhhh
Q 015811 279 NRVKELFVSMESMGCKHDDFSYNILINGYCKNKE--------VEEALSLYNELP 324 (400)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~ 324 (400)
++|...|+++.+.+ +.+...+..+..++...++ +++|.+.+..+.
T Consensus 551 ~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 551 VGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99999999998864 3346677778888766444 666666666554
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=3.7e-10 Score=93.24 Aligned_cols=233 Identities=12% Similarity=0.010 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--C-ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHH
Q 015811 99 EAAALFTKLKAFGCEPNVITYNTLINGLCRT--G-HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDK 175 (400)
Q Consensus 99 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (400)
+|.+++.+..+.- +++...| .+ .+. + ++++|...|++. ...+...|++++
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------------~~~~~~~g~~~~ 55 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------------ATIYRLRKELNL 55 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------------HHHHHHTTCTHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------------HHHHHHcCCHHH
Confidence 3566666666552 2222222 22 232 2 477888777765 335678899999
Q ss_pred HHHHHHHHHHc----CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----cccHHHHHHHHHhc-CCch
Q 015811 176 AKELFLQMKYE----NLNPN-VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP-N----VVSSNVIMNELCKN-GKMD 244 (400)
Q Consensus 176 a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~ 244 (400)
|...|.+..+. +.+++ ..+|..+..+|...|++++|+..+++..+..... + ..++..+..+|... |+++
T Consensus 56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~ 135 (292)
T 1qqe_A 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence 99999887653 22222 4678889999999999999999999887642110 1 34677888889996 9999
Q ss_pred hHHHHHHHHHhCCCCC-c----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCH
Q 015811 245 NASRLLDLMVQCDVRP-N----AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDD------FSYNILINGYCKNKEV 313 (400)
Q Consensus 245 ~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 313 (400)
+|...|++..+..... + ..++..+...+...|++++|...+++..+....... ..|..+..++...|++
T Consensus 136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 9999998887642110 1 356788899999999999999999999886432221 1567788889999999
Q ss_pred HHHHHHHhhhhhCCCCcCH------HHHHHHHHHHh--ccchHHHHHHHHHHHhh
Q 015811 314 EEALSLYNELPFKGIKPTV------VTYNTLFHGLF--EIRQAERALKLFVEMQG 360 (400)
Q Consensus 314 ~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 360 (400)
++|...+++..+. .|+. ..+..++.++. ..+++++|+..|+++..
T Consensus 216 ~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 216 VAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 9999999998864 3332 12344555554 45778888888877654
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=8.7e-10 Score=79.23 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC 127 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (400)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555566666666666666666666543 2245555556666666666666666666665543 334455555566666
Q ss_pred hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811 128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (400)
..|++++|.+.++++.... +.+...+..+..++...|++++|...++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666655532 33445555555566666666666666655554
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=4e-10 Score=87.99 Aligned_cols=163 Identities=10% Similarity=0.042 Sum_probs=84.3
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHH----------------HHHHHHhcCChhhHHHHHHHHHhc
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSI----------------LINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
..+-.....+.+.|++++|+..|++..+.. +.+...|.. +..++.+.|++++|...|++.++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455566777888888888888877653 223445555 555555666666666666665554
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHcCCCcccccc
Q 015811 76 CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH--TIVALNLFKEMTNGNGEIGVVF 153 (400)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 153 (400)
.+ .+...+..+..++...|++++|...|++..+.. +.+..++..+..+|...|+ ...+...++.... .
T Consensus 84 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--------~ 153 (208)
T 3urz_A 84 AP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--------P 153 (208)
T ss_dssp CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--------C
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--------C
Confidence 32 245555555566666666666666666655543 3344455555555443332 2223333333321 1
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (400)
.|....+.....++...|++++|...|++..+
T Consensus 154 ~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11122222333344445555555555555554
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.22 E-value=4e-08 Score=80.53 Aligned_cols=218 Identities=10% Similarity=0.025 Sum_probs=145.5
Q ss_pred hhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----Hhc---CCh
Q 015811 62 VSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES--RIVEAAALFTKLKAFGCEPNVITYNTLINGL----CRT---GHT 132 (400)
Q Consensus 62 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 132 (400)
.++|+++++.++..++. +..+|+.--.++...+ +++++++.++.+.... +-+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 35677777777776432 5556666666666666 7888888888887764 44555666544444 444 788
Q ss_pred HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---
Q 015811 133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD--KAKELFLQMKYENLNPNVVTYTSLIHGFCHAND--- 207 (400)
Q Consensus 133 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 207 (400)
++++.+++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+... -|...|+.-...+.+.+.
T Consensus 127 ~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 127 YREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp HHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch
Confidence 99999999998875 667888888888888888888 99999999998754 377777766666666555
Q ss_pred ---HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh-HHHHHHHHHhCC--CCCcHHHHHHHHHHHHcCCChHHH
Q 015811 208 ---WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN-ASRLLDLMVQCD--VRPNAFTYNTLMDGFCLTGKINRV 281 (400)
Q Consensus 208 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 281 (400)
++++++.++.++... +-|...++.....+.+.|+... +..+...+.+.+ -+.++..+..++..+.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 677777777777664 3466666666666666666333 334445444321 123455566666666666666666
Q ss_pred HHHHHHHHh
Q 015811 282 KELFVSMES 290 (400)
Q Consensus 282 ~~~~~~~~~ 290 (400)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=8.3e-11 Score=86.51 Aligned_cols=146 Identities=8% Similarity=-0.058 Sum_probs=117.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR 96 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (400)
|...+...|++++|++.++...... +.+...+..+...|.+.|++++|.+.|++.++..+ -+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 4566778899999999999987642 22455777889999999999999999999999753 378899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811 97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNL-FKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF 172 (400)
Q Consensus 97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (400)
+++|...|++..+.. +-+..++..+...+.+.|+.++|.+. +++..+.. |-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHhCc
Confidence 999999999999885 45678899999999999999876665 57777754 4566777777777776664
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=3.8e-10 Score=92.87 Aligned_cols=167 Identities=9% Similarity=-0.041 Sum_probs=101.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH-
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNT- 121 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 121 (400)
+.+...+..+...+.+.|++++|...|++.++..+ .+...+..+..++...|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 33445566666666777777777777777766542 25566666677777777777777777766554 233332222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChHhHHHHHH
Q 015811 122 LINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY-ENLNPNVVTYTSLIH 200 (400)
Q Consensus 122 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 200 (400)
....+...++.++|+..+++..... |.+...+..+...+...|++++|...|..+.+ ..-..+...+..++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 2223445566666666676666653 45566666777777777777777777766543 311223556666777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 015811 201 GFCHANDWNEAKGLLIEMV 219 (400)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~ 219 (400)
.+...|+.++|...+++..
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 7777777777666666544
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=1.8e-08 Score=82.58 Aligned_cols=234 Identities=8% Similarity=-0.030 Sum_probs=183.0
Q ss_pred ccC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--ChhhHHHHHHHHHhccCCccHHHHHHHHHHH----Hhc-
Q 015811 23 KNK-HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG--QVSLGFVIFGRILRSCFAPNVVTFTSLIKGL----CAE- 94 (400)
Q Consensus 23 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 94 (400)
+.| ..++|+.+++.++..+ +-+..+|+.--.++...| +++++++.++.++..+++ +..+|+.-..++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 444 4579999999999876 557788999999999999 999999999999998644 666776655555 445
Q ss_pred --CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811 95 --SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI--VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE 170 (400)
Q Consensus 95 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (400)
+++++++.+++.+.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.+ +.|...|+.-...+...
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-------~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-------LKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHSS
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhc
Confidence 78999999999999876 668888888888888889888 9999999999876 56788888777777777
Q ss_pred CC------hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH-HHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcC
Q 015811 171 GF------VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWN-EAKGLLIEMVDQG--VQPNVVSSNVIMNELCKNG 241 (400)
Q Consensus 171 ~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 241 (400)
+. ++++++.+..++.... -|...|+.+-..+.+.|+.. .+..+..++.+.+ -+.++..+..++.+|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 76 8999999999988753 47888888888888877744 3555666555432 1346677888899999999
Q ss_pred CchhHHHHHHHHHhC-CCCCcHHHHHHH
Q 015811 242 KMDNASRLLDLMVQC-DVRPNAFTYNTL 268 (400)
Q Consensus 242 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l 268 (400)
+.++|.++++.+.+. + +.....|+..
T Consensus 273 ~~~~A~~~~~~l~~~~D-pir~~yW~~~ 299 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYN-PIRSNFWDYQ 299 (306)
T ss_dssp CHHHHHHHHHHHHHTTC-GGGHHHHHHH
T ss_pred CHHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence 999999999999863 3 4444455443
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=5.8e-09 Score=81.58 Aligned_cols=177 Identities=12% Similarity=-0.028 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC----CHHHHHHH
Q 015811 28 DTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES----RIVEAAAL 103 (400)
Q Consensus 28 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 103 (400)
.+|++.|++..+.| +...+..+...+...+++++|.++|++..+.+ +...+..|...|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35777888887754 77888888888888999999999999988765 56677777777777 6 89999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCccccccc-CChhhHHHHHHHHHh----cCChH
Q 015811 104 FTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIGVVFK-PNTVTYSIIIDGLCK----EGFVD 174 (400)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~ 174 (400)
|++..+.| +...+..|...|.. .+++++|+.+|++..+.+. . .....+..+..+|.. .++++
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~------~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE------SDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT------SHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC------CcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99987754 66677778777776 7889999999998887651 0 126777788888877 77888
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 015811 175 KAKELFLQMKYENLNPNVVTYTSLIHGFCHA-N-----DWNEAKGLLIEMVDQG 222 (400)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 222 (400)
+|..+|++..+. ..+...+..|...|... | ++++|..+++...+.|
T Consensus 147 ~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 147 KASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 888888888776 23445566666666543 2 7888888888877765
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.17 E-value=3.2e-07 Score=81.18 Aligned_cols=199 Identities=11% Similarity=-0.010 Sum_probs=118.0
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhc-cC-CccHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ-VSLGFVIFGRILRS-CF-APNVVTFTSL 87 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l 87 (400)
-.+|...+..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|+..+.. |. ..+...|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 3567777777655 8999999999999874 5799999999988877763 46677888887763 32 3367888888
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHh-------------cCChHHHHHHHHHHHcCCCc
Q 015811 88 IKGLC----AESRIVEAAALFTKLKAFGCEPN--VITYNTLINGLCR-------------TGHTIVALNLFKEMTNGNGE 148 (400)
Q Consensus 88 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~ 148 (400)
+..+. ..++.+.+.++|++.+.. ++. ...|......-.. .+.+..|..+++.+...-
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~-- 167 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI-- 167 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH--
Confidence 87754 346788899999999874 322 1222222111000 112223333343333210
Q ss_pred ccccccCChhhHHHHHHHHHhcC--C-----hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 149 IGVVFKPNTVTYSIIIDGLCKEG--F-----VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
...+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++....
T Consensus 168 ----~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 168 ----RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp ----HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 0012234444443322211 0 234556677766542 334566666666677777777777777777765
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=6.7e-09 Score=82.12 Aligned_cols=185 Identities=11% Similarity=0.004 Sum_probs=124.0
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccH--HHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLF-P-DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNV--VTFTS 86 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 86 (400)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+++++..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 456667788899999999999999999875321 1 1467888899999999999999999999986433111 23444
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCc
Q 015811 87 LIKGLCA------------------ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGE 148 (400)
Q Consensus 87 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (400)
+..++.. .|++++|...|+++.+.. +-+..++...... ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH------
Confidence 4444443 567888888888888662 2222222211110 0000111
Q ss_pred ccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015811 149 IGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV----VTYTSLIHGFCHANDWNEAKGLLIEMVDQG 222 (400)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 222 (400)
......+...+.+.|++++|+..|+.+.+.. |+. ..+..+..++.+.|++++|.+.++.+...+
T Consensus 147 --------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1122345677888888888888888888763 332 457778888888888888888888887764
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=1.3e-08 Score=80.53 Aligned_cols=184 Identities=9% Similarity=-0.004 Sum_probs=133.1
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-h---h
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV-I---T 118 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~ 118 (400)
+...+..+...+...|++++|...|+++++..+.. ....+..+..++.+.|++++|...|+++.+.. |+. . +
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 45566777788999999999999999999864321 23577888999999999999999999999874 332 2 3
Q ss_pred HHHHHHHHHh------------------cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHH
Q 015811 119 YNTLINGLCR------------------TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELF 180 (400)
Q Consensus 119 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 180 (400)
+..+..++.. .|+.++|+..|+++.+.. |-+...+....... .+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~----------~~~ 143 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLV----------FLK 143 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHH----------HHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHH----------HHH
Confidence 4444444443 578999999999999865 33333332221111 011
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811 181 LQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV----VSSNVIMNELCKNGKMDNASRLLDLMVQC 256 (400)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (400)
..+. .....+...+.+.|++++|...++.+++.. |+. ..+..+..++.+.|++++|.+.++.+...
T Consensus 144 ~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 144 DRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1111 112345677889999999999999999873 332 46788899999999999999999999886
Q ss_pred C
Q 015811 257 D 257 (400)
Q Consensus 257 ~ 257 (400)
+
T Consensus 214 ~ 214 (225)
T 2yhc_A 214 S 214 (225)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=5.5e-09 Score=81.70 Aligned_cols=178 Identities=10% Similarity=-0.022 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC----CchhHHHHH
Q 015811 175 KAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG----KMDNASRLL 250 (400)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 250 (400)
+|+++|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777754 66777788888888889999999998888765 55667777777776 6 788899999
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHc----CCChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHh
Q 015811 251 DLMVQCDVRPNAFTYNTLMDGFCL----TGKINRVKELFVSMESMGCK-HDDFSYNILINGYCK----NKEVEEALSLYN 321 (400)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 321 (400)
+...+.+ ++..+..|...|.. .+++++|...|++..+.+.. .++..+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887754 56677778777876 78899999999988887521 126777788888887 788999999999
Q ss_pred hhhhCCCCcCHHHHHHHHHHHhcc-c-----hHHHHHHHHHHHhhCCCC
Q 015811 322 ELPFKGIKPTVVTYNTLFHGLFEI-R-----QAERALKLFVEMQGNDVA 364 (400)
Q Consensus 322 ~~~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~~ 364 (400)
+..+. ..+...+..|...|... | +.++|...|++..+.|..
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88776 23444566666666542 2 789999999888877643
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=2.7e-09 Score=96.97 Aligned_cols=154 Identities=12% Similarity=0.008 Sum_probs=114.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 015811 24 NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAAL 103 (400)
Q Consensus 24 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 103 (400)
.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999887764 4467888899999999999999999999998875 33677888899999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc---CChHHHHHHH
Q 015811 104 FTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE---GFVDKAKELF 180 (400)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 180 (400)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99988875 4467788888999999999999999999988764 45677888888888888 9999999999
Q ss_pred HHHHHcC
Q 015811 181 LQMKYEN 187 (400)
Q Consensus 181 ~~~~~~~ 187 (400)
++..+.+
T Consensus 152 ~~al~~~ 158 (568)
T 2vsy_A 152 RAAVAQG 158 (568)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9988764
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.12 E-value=5.1e-10 Score=82.26 Aligned_cols=143 Identities=10% Similarity=-0.090 Sum_probs=89.6
Q ss_pred HHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 015811 54 NCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI 133 (400)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (400)
..+...|++++|++.++...... +.+...+..+...|...|++++|++.|++..+.. +-+..+|..+..++...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34445567777777777766542 1234455567777777777777777777777664 445667777777777777777
Q ss_pred HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015811 134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKEL-FLQMKYENLNPNVVTYTSLIHGFCHAN 206 (400)
Q Consensus 134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (400)
+|+..|++..+.. |-+...+..+..++.+.|+++++.+. +++..+.. +-+..+|......+...|
T Consensus 83 ~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 7777777777654 34566677777777777777655443 46665542 224455555555544444
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.12 E-value=6.4e-09 Score=85.50 Aligned_cols=162 Identities=14% Similarity=0.031 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY 160 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.... |+....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--------p~~~~~ 187 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--------QDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------CSHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------cchHHH
Confidence 3344444455555555555555555555442 2234444555555555555555555555544321 222211
Q ss_pred HHH-HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHH
Q 015811 161 SII-IDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP-NVVSSNVIMNELC 238 (400)
Q Consensus 161 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 238 (400)
... ...+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++.+..... +...+..++..+.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 111 112334444444555555544432 2234444455555555555555555555555442110 1334444455555
Q ss_pred hcCCchhHHHHHHH
Q 015811 239 KNGKMDNASRLLDL 252 (400)
Q Consensus 239 ~~~~~~~a~~~~~~ 252 (400)
..|+.++|...+++
T Consensus 267 ~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 267 ALGTGDALASXYRR 280 (287)
T ss_dssp HHCTTCHHHHHHHH
T ss_pred HcCCCCcHHHHHHH
Confidence 55555555444443
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=3e-09 Score=88.49 Aligned_cols=165 Identities=10% Similarity=-0.067 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--Ccc
Q 015811 159 TYSIIIDGLCKEGFVDKAKELFLQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGV---QP--NVV 228 (400)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 228 (400)
.|......|...|++++|...|.+..+. +..+ -..+|..+...|...|++++|...+++..+... .+ ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444455566667777777666665432 1000 123555666666666666666666666554210 11 123
Q ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHhCCCC---C--cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC----CCCC-HH
Q 015811 229 SSNVIMNELCKNGKMDNASRLLDLMVQCDVR---P--NAFTYNTLMDGFCLTGKINRVKELFVSMESMG----CKHD-DF 298 (400)
Q Consensus 229 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~ 298 (400)
++..+..+|.. |++++|...+++..+.... + ...++..+...+...|++++|...+++..+.. ..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 44555555655 6666666666655442100 0 13445556666666666666666666665421 0011 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 299 SYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 299 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
.+..++.++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44445555555666666666666665
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=1.4e-09 Score=82.45 Aligned_cols=160 Identities=9% Similarity=-0.012 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HH
Q 015811 49 YSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING-LC 127 (400)
Q Consensus 49 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 127 (400)
+......+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3344445555555555555555555442 2244455555555555555555555555554432 222222111111 11
Q ss_pred hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcC
Q 015811 128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHAN 206 (400)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 206 (400)
..+...+|+..+++..... |.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred hhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 1112222444444444432 2234444445555555555555555555544432111 1234444444444455
Q ss_pred CHHHHHHHHHHH
Q 015811 207 DWNEAKGLLIEM 218 (400)
Q Consensus 207 ~~~~a~~~~~~~ 218 (400)
+.++|...+++.
T Consensus 159 ~~~~A~~~y~~a 170 (176)
T 2r5s_A 159 QGNAIASKYRRQ 170 (176)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555554444443
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=4.9e-09 Score=95.25 Aligned_cols=154 Identities=9% Similarity=-0.007 Sum_probs=117.6
Q ss_pred cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 015811 59 MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNL 138 (400)
Q Consensus 59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 138 (400)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 3367888999999999999999999999999874 45678888999999999999999999
Q ss_pred HHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CCHHHHHHHH
Q 015811 139 FKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA---NDWNEAKGLL 215 (400)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 215 (400)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+
T Consensus 80 ~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 80 LQQASDAA-------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99998865 5567889999999999999999999999998764 23567888899999999 9999999999
Q ss_pred HHHHHCC
Q 015811 216 IEMVDQG 222 (400)
Q Consensus 216 ~~~~~~~ 222 (400)
++..+.+
T Consensus 152 ~~al~~~ 158 (568)
T 2vsy_A 152 RAAVAQG 158 (568)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9998875
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=1.8e-07 Score=82.81 Aligned_cols=209 Identities=9% Similarity=-0.038 Sum_probs=129.6
Q ss_pred ccC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC-HHHH
Q 015811 23 KNK-HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR-IVEA 100 (400)
Q Consensus 23 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 100 (400)
+.| +++.|+.+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488888888888764 233 8899999999999986 5699999999888877764 4556
Q ss_pred HHHHHHHHHc-CC-CCChhhHHHHHHHHH----hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh-----
Q 015811 101 AALFTKLKAF-GC-EPNVITYNTLINGLC----RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK----- 169 (400)
Q Consensus 101 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 169 (400)
..+|+..... |. +.+...|...+..+. ..++.+.+.++|++..... ...-...|......-..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P------~~~~~~lw~~Y~~fE~~~~~~~ 141 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP------MGSLSELWKDFENFELELNKIT 141 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC------CTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh------hhhHHHHHHHHHHHHHHhcccc
Confidence 7788877753 43 336677777776554 2456788999999998732 11112233322221111
Q ss_pred --------cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc--CC-----HHHHHHHHHHHHHCCCCCCcccHHHHH
Q 015811 170 --------EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA--ND-----WNEAKGLLIEMVDQGVQPNVVSSNVIM 234 (400)
Q Consensus 170 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 234 (400)
.+.+..|..+++.+...-...+...|...+..-... +- .+.+..++++++... +.+...|...+
T Consensus 142 ~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya 220 (493)
T 2uy1_A 142 GKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYS 220 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 122333444444443210011334555555443221 11 345677888888753 45567787788
Q ss_pred HHHHhcCCchhHHHHHHHHHhC
Q 015811 235 NELCKNGKMDNASRLLDLMVQC 256 (400)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~ 256 (400)
..+.+.|+++.|..++++....
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC
Confidence 8888999999999999998876
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.05 E-value=3.9e-09 Score=74.83 Aligned_cols=114 Identities=11% Similarity=0.039 Sum_probs=95.1
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.|.....+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.+++.++.+ +.+...|..
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 34566788889999999999999999999998875 5578899999999999999999999999999875 336788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLI 123 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 123 (400)
+..++...|++++|.+.|++..+.. |-+...+..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 9999999999999999999999874 33444444443
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=2.6e-08 Score=82.83 Aligned_cols=135 Identities=10% Similarity=-0.079 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--Ch
Q 015811 118 TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN---P--NV 192 (400)
Q Consensus 118 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~ 192 (400)
+|+.+...|...|++++|+..|++........+. ......++..+..+|.. |++++|+..|++..+.... + ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 3444444455555555555554443322100000 11123445555555544 5555555555544332100 0 02
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-cccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQG----VQPN-VVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
.++..+...+.+.|++++|+..+++..+.. ..+. ...+..+..++...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344455555555555555555555554321 0000 1133444445555566666666665555
No 118
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.98 E-value=1.8e-08 Score=72.02 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=101.6
Q ss_pred CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
+.|.++.+|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 345677889999999999999999999999998765 4578899999999999999999999999999875 33678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 130 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 130 (400)
.+..++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99999999999999999999998774 334556666666665544
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.97 E-value=1.3e-06 Score=72.35 Aligned_cols=176 Identities=9% Similarity=-0.040 Sum_probs=125.1
Q ss_pred HhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-ChH
Q 015811 57 CKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES-RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRT-G-HTI 133 (400)
Q Consensus 57 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 133 (400)
...+..++|+++++.++..++. +..+|+.--.++...| .++++++.++.+.... +-+..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 3344556788888888887533 6667777666776777 5888888888888775 45667777766666665 6 788
Q ss_pred HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015811 134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD--------KAKELFLQMKYENLNPNVVTYTSLIHGFCHA 205 (400)
Q Consensus 134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (400)
+++.+++++.+.. +.+..+|+.-.-++.+.+.++ ++++.++++.+... -|...|+.....+.+.
T Consensus 143 ~EL~~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHHHHHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 9999999988875 567777776666665555555 88999999888753 4778888777777776
Q ss_pred CC-------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCc
Q 015811 206 ND-------WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKM 243 (400)
Q Consensus 206 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (400)
+. ++++++.+++++... +-|...++.+-..+.+.|..
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 65 677888887777764 44666666665555555543
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=9.1e-08 Score=74.77 Aligned_cols=129 Identities=10% Similarity=-0.091 Sum_probs=112.7
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL 91 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
..+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345677888899999999999998874 5688999999999999999999999999999875 34778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNV----------------ITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
...|++++|...|++..+.. +.+. ..+..+..++...|++++|...|++.....
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999864 2222 678889999999999999999999998865
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.97 E-value=3.5e-07 Score=75.83 Aligned_cols=183 Identities=10% Similarity=-0.024 Sum_probs=141.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811 14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG-QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC 92 (400)
Q Consensus 14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
++.+-....+.+..++|+++++.+...+ +-+..+|+.--.++...| .++++++.++.++...++ +..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 3444444455666789999999999876 557788999888888888 599999999999998654 7888888777777
Q ss_pred hc-C-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811 93 AE-S-RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI--------VALNLFKEMTNGNGEIGVVFKPNTVTYSI 162 (400)
Q Consensus 93 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
.. + ++++++++++++.+.. +.+..+|+...-.+.+.+.++ ++++.++++.+.. +-|...|+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------p~N~SAW~~ 206 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------GRNNSAWGW 206 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 76 6 8899999999999775 557777777666665555555 8999999998875 668888888
Q ss_pred HHHHHHhcCC-------hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015811 163 IIDGLCKEGF-------VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND 207 (400)
Q Consensus 163 l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (400)
....+.+.+. ++++++.+.+++... +-|...|+.+-..+.+.|+
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 8888877776 688999998888764 3467777776666655554
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=6.5e-09 Score=85.16 Aligned_cols=196 Identities=11% Similarity=0.007 Sum_probs=125.9
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
|.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...+..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4567788888899999999999999999988764 4478888889999999999999999999988875 3367788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL 167 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (400)
..++...|++++|...|++..+.. +.+...+...+....+ ..++..... ..... .+.+......+...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~------~~~~~~i~~~l~~l- 146 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKRWNS-IEERR------IHQESELHSYLTRL- 146 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHHHHH-HHHTC------CCCCCHHHHHHHHH-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHHHHH-HHHHH------HhhhHHHHHHHHHH-
Confidence 899999999999999998887653 1111111112211111 111112211 11122 23444444433332
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 015811 168 CKEGFVDKAKELFLQMKYENLNPNV-VTYTSLIHGFCHA-NDWNEAKGLLIEMVD 220 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 220 (400)
..|++++|.+.++...+. .|+. .....+...+.+. +.++++.++|..+.+
T Consensus 147 -~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 257888888888776654 3443 3333333333333 557778888876654
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=1.1e-07 Score=74.34 Aligned_cols=135 Identities=12% Similarity=-0.108 Sum_probs=110.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC 127 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (400)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566778889999999999999874 5578899999999999999999999999999875 557788999999999
Q ss_pred hcCChHHHHHHHHHHHcCCCccc--------c-cccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 015811 128 RTGHTIVALNLFKEMTNGNGEIG--------V-VFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN 187 (400)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 187 (400)
..|++++|+..|++.....+... . ..+.....+..+..++...|++++|...|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999988642100 0 001123678888899999999999999999988763
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.95 E-value=8.2e-09 Score=75.42 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=75.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC 92 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (400)
....+.+.+...+.+.+++.+ . +.+...+..+...+.+.|++++|...|+++++.. +.+...|..+..++.
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l-------~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI-------P-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS-------C-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHhCC-------C-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344555555555444444322 1 2234456666666667777777777777776654 225666666677777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
..|++++|...|++..+.. +.++..|..+..+|...|++++|+..|++.....
T Consensus 82 ~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777766654 3455666666777777777777777777666654
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.95 E-value=4.4e-08 Score=69.04 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=95.0
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG 90 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (400)
..+|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 6788889999999999999999999998765 4578889999999999999999999999998864 3467788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR 128 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (400)
+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999998774 3455555555555443
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=4e-08 Score=73.37 Aligned_cols=131 Identities=7% Similarity=-0.015 Sum_probs=109.3
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG 90 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (400)
...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4567888889999999999999999998865 4578899999999999999999999999999875 3467888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHhcCChHHHHHHHHHHHc
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPNVITYNT--LINGLCRTGHTIVALNLFKEMTN 144 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 144 (400)
+...|++++|...|++..+.. +.+...+.. ....+...|++++|+..+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999874 334455533 44447788999999999887643
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=2e-07 Score=76.95 Aligned_cols=161 Identities=12% Similarity=0.029 Sum_probs=87.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCChH----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-----ccHHHH
Q 015811 164 IDGLCKEGFVDKAKELFLQMKYENL-NPNVV----TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV-----VSSNVI 233 (400)
Q Consensus 164 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l 233 (400)
+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...+++..+.....+. .+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777766655321 11111 1223444555556677777777776663222111 145666
Q ss_pred HHHHHhcCCchhHHHHHHHHHh----C-CCCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhc----CCCCC-HHHHHH
Q 015811 234 MNELCKNGKMDNASRLLDLMVQ----C-DVRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESM----GCKHD-DFSYNI 302 (400)
Q Consensus 234 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 302 (400)
..+|...|++++|...++.+.+ . +..+ ...++..+...|...|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666667777777666666652 1 1111 1235566666677777777777766665432 11111 455666
Q ss_pred HHHHHHhcCC-HHHHHHHHhhhh
Q 015811 303 LINGYCKNKE-VEEALSLYNELP 324 (400)
Q Consensus 303 l~~~~~~~~~-~~~A~~~~~~~~ 324 (400)
+..+|...|+ +++|...+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666663 466666666554
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.92 E-value=2.5e-08 Score=70.99 Aligned_cols=122 Identities=10% Similarity=0.079 Sum_probs=103.5
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL 87 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (400)
|.+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|.+.++...+.. +.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 4566788889999999999999999999998764 4578889999999999999999999999999874 3367788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 132 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 132 (400)
..++...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998874 44667777777777776654
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=5.7e-08 Score=68.72 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=89.5
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING 125 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (400)
...+......+.+.|++++|++.|++.++.. +.+...|..+..++...|++++|+..+++.++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4578888999999999999999999999875 3478899999999999999999999999999885 5578889999999
Q ss_pred HHhcCChHHHHHHHHHHHcCC
Q 015811 126 LCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~ 146 (400)
+...|++++|++.|++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999998864
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.91 E-value=1.5e-07 Score=77.63 Aligned_cols=172 Identities=9% Similarity=0.021 Sum_probs=119.3
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH------HhHHHHHHHHHhcCChhhHHHHHHHHHhccCC---cc--
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL------YTYSILINCFCKMGQVSLGFVIFGRILRSCFA---PN-- 80 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-- 80 (400)
..+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++..+.... +.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455677788899999999999888765322 22 22344556677788999999999988763211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFG-CEPN-----VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK 154 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 154 (400)
..+++.+...|...|++++|...|++..+.. ..|+ ..++..+...|...|++++|+..+++.......... ..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-~~ 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MA 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-HH
Confidence 4578888899999999999999998887320 0122 257788888999999999999999887653210000 11
Q ss_pred CChhhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 015811 155 PNTVTYSIIIDGLCKEGFVDKA-KELFLQMKY 185 (400)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 185 (400)
.-..+|..+..++.+.|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1256777888888889999888 776776653
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=3.8e-07 Score=75.20 Aligned_cols=165 Identities=7% Similarity=0.025 Sum_probs=121.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----
Q 015811 121 TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT----VTYSIIIDGLCKEGFVDKAKELFLQMKYENLN-PN---- 191 (400)
Q Consensus 121 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 191 (400)
..+..+...|++++|..++++...... ..++. ..+..+...+...+++++|+..++++...... ++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 346678889999999999999887542 12221 13334666777788999999999999874322 22
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CcccHHHHHHHHHhcCCchhHHHHHHHHHhC----CCCC-
Q 015811 192 VVTYTSLIHGFCHANDWNEAKGLLIEMVDQ-----GVQP-NVVSSNVIMNELCKNGKMDNASRLLDLMVQC----DVRP- 260 (400)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 260 (400)
..+++.+...|...|++++|...++++.+. +..+ ...++..+..+|.+.|++++|...+++..+. +..+
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 236888999999999999999999998842 1111 1236778889999999999999999887643 2122
Q ss_pred cHHHHHHHHHHHHcCCC-hHHHHHHHHHHHh
Q 015811 261 NAFTYNTLMDGFCLTGK-INRVKELFVSMES 290 (400)
Q Consensus 261 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 290 (400)
-..++..+..++...|+ +++|...+++...
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 26688889999999995 6999999988754
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=1.1e-07 Score=71.01 Aligned_cols=128 Identities=13% Similarity=0.001 Sum_probs=91.3
Q ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015811 229 SSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC 308 (400)
Q Consensus 229 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (400)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 35556666777778888888777776654 4456777777788888888888888888887764 456777888888888
Q ss_pred hcCCHHHHHHHHhhhhhCCCCcCHHHHHH--HHHHHhccchHHHHHHHHHHHh
Q 015811 309 KNKEVEEALSLYNELPFKGIKPTVVTYNT--LFHGLFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 309 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 359 (400)
..|++++|...++++.+... .+...+.. ....+...|++++|+..+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888776532 23444433 3334667788888888887654
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=2.5e-08 Score=75.47 Aligned_cols=123 Identities=12% Similarity=0.133 Sum_probs=103.0
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH-HHhcCCH--
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG-LCAESRI-- 97 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 97 (400)
+...|++++|+..++...+.. +.+...|..+..++...|++++|...|++..+... .+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 456889999999999988765 55788999999999999999999999999998753 367788888888 7789998
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 98 VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 98 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
++|...+++..+.. +.+...+..+...+...|++++|...++++....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999875 4567788889999999999999999999998865
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=2.5e-08 Score=81.63 Aligned_cols=97 Identities=10% Similarity=-0.046 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY 160 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 75 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHH
Confidence 3445555555556666666666666655542 2345555556666666666666666666665543 3344555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 015811 161 SIIIDGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (400)
..+..++...|++++|...|++..+
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666666665544
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=5.3e-08 Score=71.10 Aligned_cols=100 Identities=18% Similarity=-0.016 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT 159 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..... |.+...
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SSCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------CCCcHH
Confidence 55677778888889999999999999988875 5577888888889999999999999999888865 556788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYEN 187 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 187 (400)
|..+..++...|++++|...|++..+..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888889999999999999999888763
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=1.4e-07 Score=67.27 Aligned_cols=120 Identities=5% Similarity=-0.071 Sum_probs=100.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 122 (400)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3457788999999999999999999999999875 3377889999999999999999999999999875 4567888999
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC
Q 015811 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG 171 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (400)
..++...|++++|...+++..... +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-------SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhc
Confidence 999999999999999999998764 345566666666666554
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.84 E-value=6.4e-08 Score=73.22 Aligned_cols=120 Identities=9% Similarity=0.055 Sum_probs=54.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-HHcCCCh--HH
Q 015811 204 HANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-FCLTGKI--NR 280 (400)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 280 (400)
..|++++|...++...+.. +.+...+..+..+|...|++++|...++.+.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3444555555555544432 2233444445555555555555555555544432 2234444444444 4444554 55
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 281 VKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
|...++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555554443 223444444555555555555555555554443
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=5.1e-07 Score=74.44 Aligned_cols=170 Identities=10% Similarity=-0.043 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV------ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK 154 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 154 (400)
...+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++........ ..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~ 150 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG---ID 150 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS---SC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC---Cc
Confidence 445566777888999999999999888775321 21 123345566677889999999998887543210 01
Q ss_pred CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----
Q 015811 155 PN--TVTYSIIIDGLCKEGFVDKAKELFLQMKYE-NLNPN-----VVTYTSLIHGFCHANDWNEAKGLLIEMVDQG---- 222 (400)
Q Consensus 155 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 222 (400)
+. ..+++.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++..+..
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 11 347778888888889999999888887632 00111 1467777788888888888888888766431
Q ss_pred CCC-CcccHHHHHHHHHhcCCchhH-HHHHHHHH
Q 015811 223 VQP-NVVSSNVIMNELCKNGKMDNA-SRLLDLMV 254 (400)
Q Consensus 223 ~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 254 (400)
... -..++..+..+|...|++++| ...++...
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 000 134556666777777777777 55565543
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=2.5e-07 Score=65.08 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=96.2
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING 125 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (400)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999999874 3467788899999999999999999999999875 5577888899999
Q ss_pred HHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 126 LCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
+...|++++|...++++.... +.+...+..+..++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-------PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHh
Confidence 999999999999999998754 3445555555555443
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.83 E-value=5e-08 Score=75.57 Aligned_cols=163 Identities=8% Similarity=-0.062 Sum_probs=113.0
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----c-CCccHHHHHHHHHHHHhcC
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS----C-FAPNVVTFTSLIKGLCAES 95 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~ 95 (400)
+...|++++|.++++.+.. .......++..+...+...|++++|...+++..+. + .+....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3568999999996665543 22235678888999999999999999999988762 1 1224567788889999999
Q ss_pred CHHHHHHHHHHHHHc----CCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 96 RIVEAAALFTKLKAF----GCE--PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
++++|...+++..+. +-. ....++..+...+...|++++|...+++........+. ......++..+..++..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHH
Confidence 999999999887654 101 12345777888888999999999999887643210000 11112345677778888
Q ss_pred cCChHHHHHHHHHHHH
Q 015811 170 EGFVDKAKELFLQMKY 185 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~ 185 (400)
.|++++|.+.+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 8899888888887664
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=4.7e-08 Score=71.40 Aligned_cols=99 Identities=11% Similarity=-0.132 Sum_probs=66.2
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+...+..+...+...|++++|...|+..+... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 44556666666777777777777777776654 2356666667777777777777777777776654 345566666777
Q ss_pred HHHhcCChHHHHHHHHHHHcC
Q 015811 125 GLCRTGHTIVALNLFKEMTNG 145 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~ 145 (400)
++...|++++|+..|++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776653
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.82 E-value=1.2e-05 Score=66.44 Aligned_cols=198 Identities=10% Similarity=-0.012 Sum_probs=139.8
Q ss_pred hHHHHHHHH---HccCChh-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhccCC
Q 015811 13 SFNILLGCL---AKNKHYD-TVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ----------VSLGFVIFGRILRSCFA 78 (400)
Q Consensus 13 ~~~~l~~~~---~~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~ 78 (400)
.|..+...+ .+.|.+. +|+.+++.+...+ +-+..+|+.--..+...+. +++++.+++.++...++
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 444444433 3566665 8999999999876 4466777776665555443 67899999999987644
Q ss_pred ccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHcCCCcccccccC
Q 015811 79 PNVVTFTSLIKGLCAES--RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH-TIVALNLFKEMTNGNGEIGVVFKP 155 (400)
Q Consensus 79 ~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 155 (400)
+..+|+.-..++...+ .+++++.+++.+.+.. +.+..+|+.-.-.+...|. ++++++.++.+.... +.
T Consensus 107 -ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-------p~ 177 (331)
T 3dss_A 107 -SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FS 177 (331)
T ss_dssp -CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------SC
T ss_pred -CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-------CC
Confidence 8888888888887877 4899999999999886 5688888888878888888 589999999999875 66
Q ss_pred ChhhHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-----------CCHHH
Q 015811 156 NTVTYSIIIDGLCKE--------------GFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA-----------NDWNE 210 (400)
Q Consensus 156 ~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~ 210 (400)
|...|+.....+.+. +.++++++.+....... +-|...|+-+-..+.+. +.+++
T Consensus 178 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 178 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 778888777666655 34677777777777653 33556665444333333 22445
Q ss_pred HHHHHHHHHHC
Q 015811 211 AKGLLIEMVDQ 221 (400)
Q Consensus 211 a~~~~~~~~~~ 221 (400)
+++.++++.+.
T Consensus 257 el~~~~elle~ 267 (331)
T 3dss_A 257 ELESCKELQEL 267 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 55555555543
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.82 E-value=2.6e-07 Score=74.03 Aligned_cols=190 Identities=7% Similarity=-0.089 Sum_probs=129.0
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCChhhHHHHHHHHHhccC-----Ccc----------
Q 015811 23 KNKHYDTVLSLFKRLNSIGLFPDLYTYSIL-------INCFCKMGQVSLGFVIFGRILRSCF-----APN---------- 80 (400)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~---------- 80 (400)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-....+ .-+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5789999999999998875 4567888877 5666666666666666666554210 001
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC
Q 015811 81 -----VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP 155 (400)
Q Consensus 81 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (400)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------d~ 167 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-------DK 167 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------CH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-------Cc
Confidence 2234456677778888888888888877543 433355566667888888888888887554321 11
Q ss_pred --ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015811 156 --NTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPN--VVTYTSLIHGFCHANDWNEAKGLLIEMVDQG 222 (400)
Q Consensus 156 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 222 (400)
....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 123567777788888888888888888774332143 2355566677778888888888888888763
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=6.7e-08 Score=70.58 Aligned_cols=102 Identities=15% Similarity=0.069 Sum_probs=91.4
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.|.+...+..+...+.+.|++++|+..|+...... +.+...|..+..++...|++++|...|++.++..+ .+...+..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHH
Confidence 35677788889999999999999999999998875 55889999999999999999999999999998753 36788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
+..++...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999876
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.3e-07 Score=66.98 Aligned_cols=100 Identities=7% Similarity=-0.024 Sum_probs=84.2
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI 88 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 88 (400)
.+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++.++..+ .+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 79 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 345678888888999999999999999988765 45788889999999999999999999999888753 3677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 015811 89 KGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
.++...|++++|...|++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHh
Confidence 9999999999999999888765
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=5.2e-08 Score=70.70 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=80.5
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.|.+...+..+...+.+.|++++|+..|+.+...+ +.+...|..+..++...|++++|...|+..++..+ .+...+..
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 91 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFH 91 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHH
Confidence 34556677777888888888888888888887765 45777888888888888888888888888887653 36667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
+..++...|++++|...|++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888888765
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=7.7e-08 Score=80.92 Aligned_cols=132 Identities=17% Similarity=0.078 Sum_probs=110.3
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD--------------LYTYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
+..+|..+...+.+.|++++|+..|++..+...... ..+|..+..++.+.|++++|+..+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788889999999999999999999988652211 588999999999999999999999999987
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 015811 76 CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVA-LNLFKEMT 143 (400)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 143 (400)
. +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++...|+.++| ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 3478889999999999999999999999999875 45677888888889889988888 44555553
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=2.1e-07 Score=66.12 Aligned_cols=120 Identities=12% Similarity=0.031 Sum_probs=102.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+...+..+...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45678888899999999999999999999874 3467888999999999999999999999999874 456778889999
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCCh
Q 015811 125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFV 173 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (400)
.+...|++++|...+++..... +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998764 44667777787887777664
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=1.4e-07 Score=73.04 Aligned_cols=163 Identities=13% Similarity=-0.066 Sum_probs=112.3
Q ss_pred HhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCC
Q 015811 57 CKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF----GCE-PNVITYNTLINGLCRTGH 131 (400)
Q Consensus 57 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 131 (400)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678999999966655442 2346778889999999999999999999988762 111 234567788889999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--hHhHHHHHHHHHhcC
Q 015811 132 TIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN---LNPN--VVTYTSLIHGFCHAN 206 (400)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~ 206 (400)
+++|...+++........+.........+..+...+...|++++|...+++..... ..+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987664210000000123457778888889999999999998876431 1111 233566777778888
Q ss_pred CHHHHHHHHHHHHH
Q 015811 207 DWNEAKGLLIEMVD 220 (400)
Q Consensus 207 ~~~~a~~~~~~~~~ 220 (400)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888776654
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.77 E-value=1.5e-07 Score=64.73 Aligned_cols=102 Identities=9% Similarity=0.039 Sum_probs=83.7
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cHHHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NVVTFT 85 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 85 (400)
|.+..+|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 5677888888889999999999999999988765 4567788888888888999999999998888764 33 567788
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 015811 86 SLIKGLCAE-SRIVEAAALFTKLKAFG 111 (400)
Q Consensus 86 ~l~~~~~~~-~~~~~a~~~~~~~~~~~ 111 (400)
.+..++... |++++|.+.++......
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 888888888 88888888888888764
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=2e-07 Score=65.97 Aligned_cols=108 Identities=6% Similarity=0.003 Sum_probs=87.5
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--cc----HHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PN----VVTF 84 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 84 (400)
..++..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.+++.++.... ++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4578889999999999999999999998875 557889999999999999999999999998875321 11 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 015811 85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNT 121 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 121 (400)
..+..++...|++++|++.|++..+. .|++.+...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 77888888999999999999998875 566655443
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=3e-07 Score=77.34 Aligned_cols=152 Identities=9% Similarity=-0.027 Sum_probs=110.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc--------------HHHHHHHHH
Q 015811 24 NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN--------------VVTFTSLIK 89 (400)
Q Consensus 24 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 89 (400)
.+++++|+..|+...... +.+...+..+...+.+.|++++|...|++.++...... ..+|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345556665555443321 12456778888888888999999999988887643321 477888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
++.+.|++++|+..+++.++.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHH
Confidence 8888888888888888888775 4567788888888888888888888888887764 4566777778888888
Q ss_pred cCChHHH-HHHHHHHH
Q 015811 170 EGFVDKA-KELFLQMK 184 (400)
Q Consensus 170 ~~~~~~a-~~~~~~~~ 184 (400)
.|+.+++ ...|..|.
T Consensus 277 ~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777 44555554
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=2.8e-07 Score=68.64 Aligned_cols=103 Identities=12% Similarity=-0.006 Sum_probs=90.6
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS 86 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (400)
.+.+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++.. +.+...|..
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 84 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSR 84 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 44567788999999999999999999999998875 4578899999999999999999999999999875 336888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFG 111 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~ 111 (400)
+..++...|++++|...|++..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998763
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.75 E-value=5e-07 Score=72.34 Aligned_cols=196 Identities=9% Similarity=-0.057 Sum_probs=125.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHhcCChHHHHHHHHHHHcCCCcc-cccc-----------
Q 015811 93 AESRIVEAAALFTKLKAFGCEPNVITYNTL-------INGLCRTGHTIVALNLFKEMTNGNGEI-GVVF----------- 153 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~----------- 153 (400)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-....+.. ...+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788999999999998874 4456777777 455555555566666555554422110 0000
Q ss_pred --cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--ccc
Q 015811 154 --KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPN--VVS 229 (400)
Q Consensus 154 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 229 (400)
.......-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0112334556777888999999999998877543 433355555567788888888888887543321 111 235
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhCCCCC--cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811 230 SNVIMNELCKNGKMDNASRLLDLMVQCDVRP--NAFTYNTLMDGFCLTGKINRVKELFVSMESMG 292 (400)
Q Consensus 230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (400)
+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666777888888888888888776543213 23345556667777888888888888887763
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=4.2e-07 Score=63.11 Aligned_cols=110 Identities=12% Similarity=-0.004 Sum_probs=88.1
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
++..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 35677888888999999999999999988764 4578888888899999999999999999988874 336778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 122 (400)
++...|++++|.+.+++..+.. +.+...+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 9999999999999999988764 3344444433
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=1.8e-08 Score=77.89 Aligned_cols=98 Identities=13% Similarity=0.027 Sum_probs=53.2
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN---------------VVTFTSLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
...+..+...+...|++++|...|++.++...... ..++..+..++...|++++|...+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34555666666677777777777777665421100 144445555555555555555555555544
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHc
Q 015811 111 GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTN 144 (400)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 144 (400)
. +.+...+..+..++...|++++|+..|++...
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 33444455555555555555555555555544
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.73 E-value=1.9e-07 Score=67.15 Aligned_cols=103 Identities=16% Similarity=0.062 Sum_probs=90.2
Q ss_pred CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811 6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT 85 (400)
Q Consensus 6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (400)
+.|.++..|..+...+...|++++|+..|+...... +.+...|..+..++...|++++|...++..++.. +.+...+.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 81 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 81 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence 445778899999999999999999999999998875 4578899999999999999999999999999875 33678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
.+..++...|++++|...|++..+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.73 E-value=1.1e-07 Score=68.95 Aligned_cols=100 Identities=11% Similarity=-0.155 Sum_probs=88.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 45667778888999999999999999999875 3478889999999999999999999999999885 557788889999
Q ss_pred HHHhcCChHHHHHHHHHHHcCC
Q 015811 125 GLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
++...|++++|+..|+......
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988753
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.72 E-value=3.5e-05 Score=63.63 Aligned_cols=165 Identities=8% Similarity=-0.045 Sum_probs=106.7
Q ss_pred HhcCChh-hHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811 57 CKMGQVS-LGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR----------IVEAAALFTKLKAFGCEPNVITYNTLING 125 (400)
Q Consensus 57 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (400)
.+.|.++ +|+++++.++..++. +..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556555 789999999887533 55566654444433332 567788888887764 4567777777777
Q ss_pred HHhcC--ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811 126 LCRTG--HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF-VDKAKELFLQMKYENLNPNVVTYTSLIHGF 202 (400)
Q Consensus 126 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (400)
+...+ .+++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.+..+++..+ -|...|+.....+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll 189 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLL 189 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 77767 4788888888888765 5677777777777777777 5788888888887653 3666666655544
Q ss_pred Hhc--------------CCHHHHHHHHHHHHHCCCCCCcccHHH
Q 015811 203 CHA--------------NDWNEAKGLLIEMVDQGVQPNVVSSNV 232 (400)
Q Consensus 203 ~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 232 (400)
.+. +.++++++.+...+... +-|...|+.
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y 232 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFY 232 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 443 23555566665555543 224444443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=9.9e-07 Score=64.15 Aligned_cols=112 Identities=12% Similarity=0.062 Sum_probs=92.8
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHH
Q 015811 8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVT 83 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 83 (400)
|.+...+..+...+...|++++|+..|++..+.. |+ ...+..+..++...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 4577888999999999999999999999998764 55 6788889999999999999999999998874 336778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLI 123 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 123 (400)
+..+..++...|++++|...|++..+.. +.+...+..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence 8889999999999999999999998873 33344444333
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.71 E-value=1.4e-07 Score=67.06 Aligned_cols=113 Identities=10% Similarity=0.073 Sum_probs=92.6
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--cc----HHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PN----VVT 83 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 83 (400)
...+|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+.... ++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 45678889999999999999999999998765 557888999999999999999999999999876421 11 677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING 125 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (400)
+..+..++...|++++|.+.|++..+. .|+......+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 888899999999999999999999887 4565555544443
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=1.4e-06 Score=60.42 Aligned_cols=100 Identities=10% Similarity=-0.026 Sum_probs=88.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45677888899999999999999999999875 3377888899999999999999999999999875 446788889999
Q ss_pred HHHhcCChHHHHHHHHHHHcCC
Q 015811 125 GLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
++...|++++|...+++.....
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999998864
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=4.5e-07 Score=64.10 Aligned_cols=93 Identities=12% Similarity=-0.020 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 015811 231 NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN 310 (400)
Q Consensus 231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 310 (400)
......+.+.|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 334444455555555555555544433 2334445555555555555555555555555443 33344455555555555
Q ss_pred CCHHHHHHHHhhhhh
Q 015811 311 KEVEEALSLYNELPF 325 (400)
Q Consensus 311 ~~~~~A~~~~~~~~~ 325 (400)
|++++|...|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555555443
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=8.6e-08 Score=74.00 Aligned_cols=150 Identities=11% Similarity=-0.032 Sum_probs=90.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----------------
Q 015811 53 INCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV---------------- 116 (400)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------- 116 (400)
+......|+++++.+.++.-.... ......+..+...+...|++++|...|++..+.. +.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHH
Confidence 334445566666666665433321 1245567778888899999999999999998763 2222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 015811 117 ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYT 196 (400)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 196 (400)
.++..+..++...|++++|+..+++..... +.+...+..+..++...|++++|...|++..+.. +.+...+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 160 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 566667777777777777777777776653 4456667777777777777777777777776653 22445555
Q ss_pred HHHHHHHhcCCHHHHH
Q 015811 197 SLIHGFCHANDWNEAK 212 (400)
Q Consensus 197 ~l~~~~~~~~~~~~a~ 212 (400)
.+..++...++.+++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555444
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.63 E-value=9.6e-08 Score=84.35 Aligned_cols=127 Identities=6% Similarity=-0.028 Sum_probs=103.2
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG 90 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (400)
..+|..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|.+.+++.++... .+...+..+..+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 83 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 83 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3455566677888999999999999998875 45789999999999999999999999999999753 377889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLING--LCRTGHTIVALNLFK 140 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 140 (400)
|...|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999874 3345566666655 788899999999998
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=4.8e-07 Score=63.39 Aligned_cols=98 Identities=8% Similarity=-0.117 Sum_probs=76.0
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG 90 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (400)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++..+ .+...+..+..+
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~ 94 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 94 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3456667777888888888888888887765 44777888888888888888888888888887653 366677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 015811 91 LCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~ 110 (400)
+...|++++|...+++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888887754
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=6.3e-07 Score=63.40 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY 160 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
...+..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|...|++++|++.+++..+..+........-..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3456677888888888888888888888774 456777888888888999999999888887764311000000012356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 015811 161 SIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYT 196 (400)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 196 (400)
..+..++...|++++|++.|++.... .|+.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 67778888899999999999988765 35554433
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.61 E-value=9.6e-07 Score=60.62 Aligned_cols=90 Identities=12% Similarity=-0.030 Sum_probs=35.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc--CHHHHHHHHHHHhcc
Q 015811 268 LMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP--TVVTYNTLFHGLFEI 345 (400)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~ 345 (400)
+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence 3333344444444444444443332 2233333444444444444444444444443321 11 233334444444444
Q ss_pred -chHHHHHHHHHHHh
Q 015811 346 -RQAERALKLFVEMQ 359 (400)
Q Consensus 346 -~~~~~a~~~~~~~~ 359 (400)
|++++|.+.+++..
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 90 EGKEVEAEIAEARAK 104 (112)
T ss_dssp SSCSHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHHHh
Confidence 44444444444443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=1.5e-06 Score=62.39 Aligned_cols=102 Identities=11% Similarity=-0.077 Sum_probs=90.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 122 (400)
+.+...+..+...+...|++++|...|+..++.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4578889999999999999999999999999875 3367889999999999999999999999999875 5567889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCC
Q 015811 123 INGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
..++...|++++|+..|++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999987753
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.58 E-value=1.3e-06 Score=64.95 Aligned_cols=100 Identities=9% Similarity=-0.028 Sum_probs=89.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+...+..+...+...|++++|.+.|++.++.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46678889999999999999999999999875 3378889999999999999999999999999885 556888999999
Q ss_pred HHHhcCChHHHHHHHHHHHcCC
Q 015811 125 GLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
++...|++++|+..|++.....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.56 E-value=6.6e-07 Score=63.47 Aligned_cols=92 Identities=22% Similarity=0.293 Sum_probs=37.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC--CCC----HHHHHHHHHH
Q 015811 233 IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC--KHD----DFSYNILING 306 (400)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~~~ 306 (400)
+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++++.+... .++ ...+..+..+
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 88 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence 3334444444444444444443332 22333344444444444444444444444433210 011 3334444444
Q ss_pred HHhcCCHHHHHHHHhhhhh
Q 015811 307 YCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 307 ~~~~~~~~~A~~~~~~~~~ 325 (400)
+...|++++|...++++.+
T Consensus 89 ~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 89 YFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4444444444444444443
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=9.3e-07 Score=61.90 Aligned_cols=91 Identities=11% Similarity=-0.043 Sum_probs=43.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccch
Q 015811 268 LMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQ 347 (400)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 347 (400)
+...+.+.|++++|...++++.+.. +.+...|..+..++...|++++|+..+++..+.... +...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344444555555555555554443 234444445555555555555555555554443211 33444444445555555
Q ss_pred HHHHHHHHHHHhh
Q 015811 348 AERALKLFVEMQG 360 (400)
Q Consensus 348 ~~~a~~~~~~~~~ 360 (400)
+++|+..+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=6.1e-06 Score=72.14 Aligned_cols=203 Identities=11% Similarity=-0.021 Sum_probs=143.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCC----------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC-c
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPD----------------LYTYSILINCFCKMGQVSLGFVIFGRILRSCFA-P 79 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 79 (400)
-...+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+...-.. +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35667889999999999999987542211 134778899999999999999999988763111 1
Q ss_pred cH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccc
Q 015811 80 NV----VTFTSLIKGLCAESRIVEAAALFTKLKAF----GCEP-NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIG 150 (400)
Q Consensus 80 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (400)
+. .+.+.+...+...|+.+.|..++...... +..+ -..++..+...+...|++++|..+++++........
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 21 23334444555678999999998887642 2222 245677889999999999999999998765321100
Q ss_pred ccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-C-C--hHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 151 VVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE--NLN-P-N--VVTYTSLIHGFCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (400)
. .+....++..++..|...|++++|..++++.... ... | . ...+..+...+...+++++|...+.+..+
T Consensus 170 ~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 D-KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp C-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred c-chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0 1122457888899999999999999999887643 111 1 1 24456666777788999999988877764
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3.9e-06 Score=60.94 Aligned_cols=101 Identities=11% Similarity=-0.056 Sum_probs=88.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 015811 43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN----VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT 118 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 118 (400)
+.+...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 3467888999999999999999999999999874 44 6788889999999999999999999998874 446778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 119 YNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 119 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
+..+..++...|++++|...|++.....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8889999999999999999999998754
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=6.2e-06 Score=58.29 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=80.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc---HHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL---YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN---VVTFTS 86 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 86 (400)
.+..+...+.+.|++++|+..|+.+.+.. +.+. ..+..+..++...|++++|...|+.+.+..+. + ...+..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 45567788889999999999999998764 2233 57888889999999999999999999886432 3 566788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFG 111 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~ 111 (400)
+..++...|++++|...|+++.+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8899999999999999999998773
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.1e-05 Score=70.40 Aligned_cols=165 Identities=8% Similarity=-0.078 Sum_probs=73.6
Q ss_pred HHHHhcCChhhHHHHHHHHHhccCCccH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCh
Q 015811 54 NCFCKMGQVSLGFVIFGRILRSCFAPNV----------------VTFTSLIKGLCAESRIVEAAALFTKLKAFG-CEPNV 116 (400)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 116 (400)
..+.+.|++++|.+.|..+++....... ..+..+...|...|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4455667777777777766664322110 124455555666666666666555544321 01111
Q ss_pred hh---HHHHH-HHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--
Q 015811 117 IT---YNTLI-NGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE--NL-- 188 (400)
Q Consensus 117 ~~---~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 188 (400)
.+ ....+ ..+...|+.++|..+++........... ......++..+...+...|++++|..+++.+... +.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR-VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC-CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 11111 1122345555555555555544321100 0001223444555555555555555555554432 11
Q ss_pred CC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 189 NP-NVVTYTSLIHGFCHANDWNEAKGLLIEMV 219 (400)
Q Consensus 189 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 219 (400)
.+ ...++..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 01 12344445555555555555555555444
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.45 E-value=1.7e-06 Score=76.13 Aligned_cols=130 Identities=11% Similarity=0.006 Sum_probs=98.3
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC---------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD---------------LYTYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
...|..+...+.+.|++++|+..|++..+.. +.+ ...|..+..++.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4567778888888999999999999887753 222 578888888889999999999999998887
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH-HHHHHH
Q 015811 76 CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALN-LFKEMT 143 (400)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 143 (400)
.. .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.+ .+..|.
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 367788888888999999999999999888764 4456677778888888777776653 444443
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.43 E-value=7.5e-06 Score=57.84 Aligned_cols=92 Identities=16% Similarity=0.078 Sum_probs=46.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCCCcH---HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHH
Q 015811 233 IMNELCKNGKMDNASRLLDLMVQCDVRPNA---FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD---DFSYNILING 306 (400)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 306 (400)
+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...++++.+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 3444555555555555555555432 1112 344445555555555555555555555443 222 3444555555
Q ss_pred HHhcCCHHHHHHHHhhhhhC
Q 015811 307 YCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 307 ~~~~~~~~~A~~~~~~~~~~ 326 (400)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555666666555555543
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.42 E-value=1.9e-06 Score=63.70 Aligned_cols=137 Identities=10% Similarity=-0.005 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhccCC-c----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hh
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSCFA-P----NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE-PN----VI 117 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 117 (400)
++..+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++..+.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555554432110 0 0124555556666666666666666655432100 01 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811 118 TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 118 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (400)
++..+...+...|++++|...+++........+. .......+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4555566666667777776666665432100000 011123455556666666666666666666543
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=7.4e-06 Score=71.99 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=114.8
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc--------------HHHHHHHHHH
Q 015811 25 KHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN--------------VVTFTSLIKG 90 (400)
Q Consensus 25 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 90 (400)
+++++|+..|+...... +.....+..+...+.+.|+++.|...|++.++...... ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554433221 12456788888999999999999999999998643321 5788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811 91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE 170 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (400)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHH
Confidence 999999999999999999875 5578889999999999999999999999999875 45667888888888888
Q ss_pred CChHHHHH-HHHHHH
Q 015811 171 GFVDKAKE-LFLQMK 184 (400)
Q Consensus 171 ~~~~~a~~-~~~~~~ 184 (400)
++.+++.+ .+..|.
T Consensus 399 ~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 399 KEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 88877664 444443
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.41 E-value=9.4e-07 Score=61.48 Aligned_cols=87 Identities=11% Similarity=-0.011 Sum_probs=67.5
Q ss_pred ccCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHH
Q 015811 23 KNKHYDTVLSLFKRLNSIG--LFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEA 100 (400)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 100 (400)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|...|++.++..+. +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 4688899999999988764 1234567888888899999999999999999887533 677888888899999999999
Q ss_pred HHHHHHHHHc
Q 015811 101 AALFTKLKAF 110 (400)
Q Consensus 101 ~~~~~~~~~~ 110 (400)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988876
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.39 E-value=2e-06 Score=76.00 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=86.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCC
Q 015811 198 LIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGK 277 (400)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (400)
+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445667788888888888888763 3356777888888888888888888888888765 4467778888888888888
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHh
Q 015811 278 INRVKELFVSMESMGCKHDDFSYNILING--YCKNKEVEEALSLYN 321 (400)
Q Consensus 278 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 321 (400)
+++|...++++.+.. +.+...+..+..+ +.+.|++++|...++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888887764 3344455555555 777788888888887
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=5.3e-06 Score=61.49 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=77.8
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhC-------CC----------CCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSI-------GL----------FPDLYTYSILINCFCKMGQVSLGFVIFGRIL 73 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 73 (400)
+..+......+.+.|++++|+..|++.... +- +.+...|..+..++.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999998764 00 1234577778888888888888888888888
Q ss_pred hccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 74 RSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
+.. +.+...|..+..++...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 765 336777888888888888888888888888876
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.37 E-value=3.6e-06 Score=71.63 Aligned_cols=122 Identities=10% Similarity=0.013 Sum_probs=98.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHh----------------CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNS----------------IGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC 76 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 76 (400)
.|..+...+.+.|++++|+..|++..+ .. +.+..+|..+..++.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 477888899999999999999999876 21 2345788889999999999999999999999875
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 015811 77 FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALN 137 (400)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 137 (400)
+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367888889999999999999999999998874 3356666667777666666655543
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=6.5e-06 Score=60.69 Aligned_cols=139 Identities=12% Similarity=-0.009 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE-PN----VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP 155 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (400)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++........+. ...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cHH
Confidence 446777888888899999999998887754211 11 136677788888888999888888887653210000 011
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 156 NTVTYSIIIDGLCKEGFVDKAKELFLQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (400)
....+..+..++...|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1345666777778888888888888776543 1110 123455566666677777777777766554
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.34 E-value=1.3e-06 Score=60.78 Aligned_cols=88 Identities=9% Similarity=-0.031 Sum_probs=72.8
Q ss_pred hcCChhhHHHHHHHHHhcc--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 015811 58 KMGQVSLGFVIFGRILRSC--FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVA 135 (400)
Q Consensus 58 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 135 (400)
..|++++|+..|++.++.+ -+.+...+..+..++...|++++|...|++..+.. +.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999999874 23466788899999999999999999999999885 45678888999999999999999
Q ss_pred HHHHHHHHcCC
Q 015811 136 LNLFKEMTNGN 146 (400)
Q Consensus 136 ~~~~~~~~~~~ 146 (400)
+..+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999988753
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=9.2e-06 Score=69.10 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=100.5
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhc---------------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015811 47 YTYSILINCFCKMGQVSLGFVIFGRILRS---------------CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFG 111 (400)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 111 (400)
..+..+...+.+.|++++|.+.|++.++. ..+.+..+|..+..++.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777888899999999999999998871 112356788889999999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHH
Q 015811 112 CEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKE 178 (400)
Q Consensus 112 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 178 (400)
+.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999998864 4456677777777776666666543
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.32 E-value=8.1e-05 Score=67.04 Aligned_cols=175 Identities=11% Similarity=-0.006 Sum_probs=140.4
Q ss_pred ccCC-hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811 23 KNKH-YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ----------VSLGFVIFGRILRSCFAPNVVTFTSLIKGL 91 (400)
Q Consensus 23 ~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
+.|+ .++|++.++.+.... +-+..+|+.--.++...|+ ++++++.++.+++..++ +..+|..-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3444 568899999999876 4577888888888887777 89999999999998654 888999888888
Q ss_pred HhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811 92 CAES--RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG-HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC 168 (400)
Q Consensus 92 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (400)
.+.+ +++++++.++++.+.. +.+..+|+.....+...| .++++++.++++.+.. +-+...|+.....+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-------p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSCLLP 189 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------CCCHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-------CCCccHHHHHHHHHH
Confidence 8999 7799999999999986 568888988888888888 8999999999998875 667888888777766
Q ss_pred hc--------------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH
Q 015811 169 KE--------------GFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDW 208 (400)
Q Consensus 169 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (400)
+. +.++++++.+.++.... +-+...|..+-..+.+.++.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 63 45688888888888764 33667777776666666653
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=2.1e-05 Score=58.21 Aligned_cols=100 Identities=9% Similarity=-0.074 Sum_probs=85.9
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhc--------c---------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRS--------C---------FAPNVVTFTSLIKGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
...+......+.+.|+++.|...|.+.+.. . .+.+...|..+..++.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999998875 0 12245678889999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 109 AFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
+.. +.+...|..+..++...|++++|...|++.....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 885 5578889999999999999999999999998854
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=8.2e-06 Score=55.83 Aligned_cols=98 Identities=11% Similarity=-0.007 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC-------hhh
Q 015811 297 DFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD-------TCT 369 (400)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~ 369 (400)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 3445555566666666666666666655542 124555555666666666666666666666553 233 334
Q ss_pred HHHHHHHhhcCCcchhhHhhhhCCCCCC
Q 015811 370 YRTFIDGLCVRPQVRFTYARRKGNSGNT 397 (400)
Q Consensus 370 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 397 (400)
+..+..++...|++++|...++.+....
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 108 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELPEGY 108 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhHHHh
Confidence 5555556666667777766666655443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=6.6e-06 Score=69.17 Aligned_cols=147 Identities=8% Similarity=-0.045 Sum_probs=56.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811 47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL 126 (400)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (400)
..+..+...+.+.|++++|...|++.++.. |+... +...++..++...+ ...+|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 345555566666677777777777666542 22221 11122222221111 012445555555
Q ss_pred HhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH-HHhc
Q 015811 127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHG-FCHA 205 (400)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 205 (400)
.+.|++++|+..+++..... +.+...|..+..++...|++++|...|++..+.. +.+...+..+... ....
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 55666666666665555533 3344555555556666666666666665554331 1122233333322 1223
Q ss_pred CCHHHHHHHHHHHHH
Q 015811 206 NDWNEAKGLLIEMVD 220 (400)
Q Consensus 206 ~~~~~a~~~~~~~~~ 220 (400)
+..+.+...+..+..
T Consensus 313 ~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 313 ALYQKQKEMYKGIFK 327 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHhhC
Confidence 444555555555544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=4.5e-06 Score=70.17 Aligned_cols=132 Identities=11% Similarity=0.050 Sum_probs=82.1
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHH------------------hHHHHHHHHHhcCChhhHHHHHHHH
Q 015811 11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLY------------------TYSILINCFCKMGQVSLGFVIFGRI 72 (400)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~ 72 (400)
...+..+...+.+.|++++|+..|++..... |+.. .|..+..++.+.|++++|+..+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567778888999999999999999987753 4433 7888889999999999999999999
Q ss_pred HhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHcCC
Q 015811 73 LRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING-LCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~ 146 (400)
++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+++...|..+....
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9875 3377889999999999999999999999987653 2344455555444 234556677788888876643
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=2.6e-05 Score=56.41 Aligned_cols=96 Identities=16% Similarity=0.028 Sum_probs=51.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCC-C-----CH-----HhHHHHHHHHHhcCChhhHHHHHHHHHhc------
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLF-P-----DL-----YTYSILINCFCKMGQVSLGFVIFGRILRS------ 75 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 75 (400)
.+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3455566666777777777777777654311 0 11 15555555555555555555555555543
Q ss_pred -cCCccHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 76 -CFAPNVVTF----TSLIKGLCAESRIVEAAALFTKLKA 109 (400)
Q Consensus 76 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 109 (400)
.+ .+...| .....++...|++++|+..|++..+
T Consensus 93 ~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 21 133344 4445555555555555555555443
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=0.00017 Score=64.92 Aligned_cols=177 Identities=9% Similarity=-0.069 Sum_probs=137.3
Q ss_pred hcC-ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811 58 KMG-QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR----------IVEAAALFTKLKAFGCEPNVITYNTLINGL 126 (400)
Q Consensus 58 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (400)
+.| ..++|++.+++++..++. +..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344 446789999999987643 66777776666666666 899999999999876 55778888888888
Q ss_pred HhcC--ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 015811 127 CRTG--HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG-FVDKAKELFLQMKYENLNPNVVTYTSLIHGFC 203 (400)
Q Consensus 127 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (400)
.+.+ +++++++.++++.+.. +.+..+|+.-..++.+.| .++++++.+.++++..+ -+...|+.....+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~ 189 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 189 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhc-------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHH
Confidence 8889 6799999999999876 668888888888888888 89999999999987653 36777777666655
Q ss_pred hc--------------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh
Q 015811 204 HA--------------NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN 245 (400)
Q Consensus 204 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (400)
+. +.++++++.+.+.+... +-+...|...-..+.+.++.++
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 52 45788999998888764 4466777777777766666443
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=4e-05 Score=55.39 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=83.3
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc------c-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP------N-----VVTFTSLIKGLCAESRIVEAAALFTKLKAF---- 110 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 110 (400)
...+......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3456677788889999999999999999864331 2 238999999999999999999999999986
Q ss_pred ---CCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 111 ---GCEPNVITY----NTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 111 ---~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
. +-+...| .....++...|++++|+..|++..+..
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4 3456678 889999999999999999999987743
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=9.8e-05 Score=52.80 Aligned_cols=112 Identities=9% Similarity=-0.075 Sum_probs=95.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHH
Q 015811 24 NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCA----ESRIVE 99 (400)
Q Consensus 24 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 99 (400)
.+++++|+++|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 457899999999999987 44444 6677777788899999999999875 66778888888888 899999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCC
Q 015811 100 AAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 100 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 146 (400)
|...|++..+.| ++..+..|...|.. .++.++|..+|++..+.+
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999999875 67778888888888 899999999999998876
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.09 E-value=0.00014 Score=51.93 Aligned_cols=109 Identities=9% Similarity=0.013 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHc----CCChHHHH
Q 015811 207 DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCL----TGKINRVK 282 (400)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 282 (400)
++++|...|++..+.| .++ .. +...|...+..++|.+.|++..+.+ +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555544 111 11 3444444444445555555554433 33344444444444 44555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHhhhhhC
Q 015811 283 ELFVSMESMGCKHDDFSYNILINGYCK----NKEVEEALSLYNELPFK 326 (400)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 326 (400)
..|++..+.| ++..+..|...|.. .+++++|..+|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555554433 33444444444444 44455555555444443
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=2.5e-05 Score=68.68 Aligned_cols=125 Identities=7% Similarity=-0.036 Sum_probs=92.3
Q ss_pred HHHhcCCchhHHHHHHHHHhCC---CC---C-cHHHHHHHHHHHHcCCChHHHHHHHHHHHh-----cCC--CCCHHHHH
Q 015811 236 ELCKNGKMDNASRLLDLMVQCD---VR---P-NAFTYNTLMDGFCLTGKINRVKELFVSMES-----MGC--KHDDFSYN 301 (400)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~---~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~ 301 (400)
.+...|++++|..++++..+.. .. | ...+++.|..+|...|++++|..++++..+ .|. +....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999988775431 11 2 246788999999999999999999988754 231 12245688
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhC-----CC-CcCHH-HHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 302 ILINGYCKNKEVEEALSLYNELPFK-----GI-KPTVV-TYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 302 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
.|...|...|++++|..++++..+. |. .|+.. +...+-.++...+.+++|..++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987642 32 23333 445556677889999999999999875
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.07 E-value=4.9e-05 Score=52.35 Aligned_cols=81 Identities=9% Similarity=0.009 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811 244 DNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNEL 323 (400)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 323 (400)
+.|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35666777776654 4456777777777888888888888888877765 445667777788888888888888888777
Q ss_pred hhC
Q 015811 324 PFK 326 (400)
Q Consensus 324 ~~~ 326 (400)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.07 E-value=3.3e-05 Score=50.49 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=46.0
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+..+ .+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 34556666666666666666666666665543 33455666666666666666666666666665432 23444444444
Q ss_pred HH
Q 015811 90 GL 91 (400)
Q Consensus 90 ~~ 91 (400)
++
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.07 E-value=1.8e-05 Score=69.46 Aligned_cols=125 Identities=11% Similarity=-0.025 Sum_probs=95.4
Q ss_pred HHHccCChhHHHHHHHHHHhCC---CCC----CHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----c--CCccHHHHH
Q 015811 20 CLAKNKHYDTVLSLFKRLNSIG---LFP----DLYTYSILINCFCKMGQVSLGFVIFGRILRS-----C--FAPNVVTFT 85 (400)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~g---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 85 (400)
.+..+|++++|+.++++.++.. ..| ...+++.+..+|...|++++|..++++.++. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567999999999999876531 112 2467899999999999999999999988752 2 122355788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHc
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAF-----GCE-P-NVITYNTLINGLCRTGHTIVALNLFKEMTN 144 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 144 (400)
.|...|...|++++|+.++++..+. |.. | ...+.+.+..++...+.+++|+.+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642 411 1 233455667778888999999999998865
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=6.6e-06 Score=56.33 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811 266 NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP 324 (400)
Q Consensus 266 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 324 (400)
..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333334444444444444444443332 2233334444444444444444444444443
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.99 E-value=3.4e-05 Score=55.64 Aligned_cols=100 Identities=8% Similarity=-0.024 Sum_probs=81.6
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh----------hhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811 22 AKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV----------SLGFVIFGRILRSCFAPNVVTFTSLIKGL 91 (400)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (400)
.+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++.++..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45667899999999998876 56889999999999888765 5999999999998643 677888999999
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811 92 CAES-----------RIVEAAALFTKLKAFGCEPNVITYNTLING 125 (400)
Q Consensus 92 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (400)
...| ++++|++.|++..+. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 8774 899999999999987 6776666555544
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=0.00011 Score=50.59 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 29 TVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 29 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
+|+..|++..+.. +.+...+..+..++...|++++|...|++.++.. +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666554 3456667777777777777777777777776654 2245566666777777777777777777665
Q ss_pred Hc
Q 015811 109 AF 110 (400)
Q Consensus 109 ~~ 110 (400)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.95 E-value=3.9e-05 Score=51.36 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=53.7
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
.|.+..+|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++.++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888888888888888888888888887765 446678888888888888888888888887754
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=4.5e-05 Score=55.02 Aligned_cols=70 Identities=7% Similarity=-0.055 Sum_probs=36.3
Q ss_pred hcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015811 239 KNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI----------NRVKELFVSMESMGCKHDDFSYNILINGYC 308 (400)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (400)
+.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++.++.+ +.+...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3445555666666555544 34555555555555555443 35555555555543 334445555555555
Q ss_pred hc
Q 015811 309 KN 310 (400)
Q Consensus 309 ~~ 310 (400)
..
T Consensus 92 ~l 93 (158)
T 1zu2_A 92 SF 93 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.89 E-value=0.00018 Score=46.85 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=31.8
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344445555555555555555555555442 123444445555555555555555555555444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.73 E-value=0.00018 Score=48.01 Aligned_cols=63 Identities=19% Similarity=0.108 Sum_probs=32.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
+...+..+..++...|++++|...|++.++..+. +...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555555554321 34445555555555555555555555544
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.71 E-value=0.0017 Score=53.95 Aligned_cols=137 Identities=8% Similarity=-0.081 Sum_probs=95.9
Q ss_pred CCCCcchHHHHHHHHHc--c---CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cC-Ch-hhH---HHHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAK--N---KHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK---MG-QV-SLG---FVIFGRIL 73 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~~-~~-~~a---~~~~~~~~ 73 (400)
.|.+..+|...+++... . .+..+|+.+|++..+.. +-....|..+..++.. .+ .. ... ...++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 56788999998877643 2 34589999999999875 3344555544444431 11 11 111 11222211
Q ss_pred h-ccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 74 R-SCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 74 ~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
. ...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++....+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1 1225577788888877788899999999999999985 788788888889999999999999999998853
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.36 E-value=0.0083 Score=49.92 Aligned_cols=142 Identities=15% Similarity=0.084 Sum_probs=75.9
Q ss_pred CCChHhHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHh---cCCch--hH---HHHHHHHH
Q 015811 189 NPNVVTYTSLIHGFCH--A---NDWNEAKGLLIEMVDQGVQPN-VVSSNVIMNELCK---NGKMD--NA---SRLLDLMV 254 (400)
Q Consensus 189 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~--~a---~~~~~~~~ 254 (400)
+.+...|...+++... . .+..+|..+|++.++.. |+ ...+..+..+|.. .+.+. .. ...+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4566777776665432 2 23577888888888763 33 2344443333321 11001 11 11111111
Q ss_pred h-CCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHH
Q 015811 255 Q-CDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333 (400)
Q Consensus 255 ~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 333 (400)
. ...+.++..+..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...+++.... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1124455566666555555677777777777776664 55556666666666777777777777666654 45555
Q ss_pred HHH
Q 015811 334 TYN 336 (400)
Q Consensus 334 ~~~ 336 (400)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.35 E-value=0.0014 Score=42.75 Aligned_cols=68 Identities=12% Similarity=-0.028 Sum_probs=41.1
Q ss_pred CCCcchHHHHHHHHHccCC---hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc
Q 015811 8 PPPVSSFNILLGCLAKNKH---YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC 76 (400)
Q Consensus 8 p~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 76 (400)
|+|+..+..+..++...++ .++|..++++.++.. +.+..+...+...+.+.|++++|+..|+.+++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4556666666666543333 566666666666654 3455666666666666666666666666666653
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.28 E-value=0.0015 Score=43.23 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=26.2
Q ss_pred HHHhcCCchhHHHHHHHHHhCCCCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811 236 ELCKNGKMDNASRLLDLMVQCDVRPNAF-TYNTLMDGFCLTGKINRVKELFVSMESM 291 (400)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (400)
.+...|++++|...++.+.+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555544432 22333 4444444555555555555555555444
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.23 E-value=0.0025 Score=41.58 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 260 PNAFTYNTLMDGFCLTGK---INRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 260 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
.++..+..+..++...++ .++|..++++..+.+ +.++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344455555555443333 456666666665554 345555555556666666666666666665554
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.0033 Score=54.34 Aligned_cols=61 Identities=7% Similarity=-0.079 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhc-----cC-Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRS-----CF-AP-NVVTFTSLIKGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
+++.+..+|...|++++|..++++.++. |. .| ...+++.|...|...|++++|+.++++..
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4444555555555555555555544431 10 11 12234445555555555555555544443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.21 E-value=0.0026 Score=41.96 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=34.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLY-TYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
....+.+.|++++|+..|+++.+.. +.+.. .+..+..++...|++++|.+.|++.++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556666666666666665543 23445 5666666666666666666666666654
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.21 E-value=0.0079 Score=42.88 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=69.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhcc-CCccHHHHHHHHHHHHhcCCHHHHH
Q 015811 26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG---QVSLGFVIFGRILRSC-FAPNVVTFTSLIKGLCAESRIVEAA 101 (400)
Q Consensus 26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 101 (400)
....+.+-|++....| .++..+...+..++++++ +.++++.+++.+.+.+ +......+-.+.-++.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 4566777777777766 478888888999999988 6669999999999875 2124566667788889999999999
Q ss_pred HHHHHHHHcCCCCCh
Q 015811 102 ALFTKLKAFGCEPNV 116 (400)
Q Consensus 102 ~~~~~~~~~~~~~~~ 116 (400)
+.++.+.+. .|+-
T Consensus 92 ~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 92 KYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHhc--CCCC
Confidence 999999987 5543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.18 E-value=0.002 Score=55.69 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=40.0
Q ss_pred HHHccCChhHHHHHHHHHHhCC---CCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----cC-Cc-cHHHHH
Q 015811 20 CLAKNKHYDTVLSLFKRLNSIG---LFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRS-----CF-AP-NVVTFT 85 (400)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~g---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 85 (400)
.+.++|++++|+.++++.++.. ..|+ ..+++.+..+|...|++++|..++++.+.. |. .| ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3444555555555555554321 1111 234455555555555555555555544431 10 11 123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 015811 86 SLIKGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~ 108 (400)
.|...|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 45555555555555555554443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.09 E-value=0.0029 Score=54.75 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=72.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCcc-cccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCC-hHh
Q 015811 123 INGLCRTGHTIVALNLFKEMTNGNGEI-GVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE-----N-LNPN-VVT 194 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 194 (400)
+..+...|++++|+.++++........ +...+....+++.+..+|...|++++|+.++++.... | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999988654321 1112223467888999999999999999999987642 2 1222 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 195 YTSLIHGFCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (400)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888889999999999998887764
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.08 E-value=0.0084 Score=42.74 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHhhhhhCCCCc--CHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 295 HDDFSYNILINGYCKNK---EVEEALSLYNELPFKGIKP--TVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 295 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
++..+...+..++++.+ +.++++.++++..+.+ .| +...+-.+.-++.+.|++++|.++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44444444455555544 3345555555544432 12 122333333344555555555555555554
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.0015 Score=56.45 Aligned_cols=93 Identities=5% Similarity=-0.147 Sum_probs=64.8
Q ss_pred hcCChHHHHHHHHHHHcCCCcc-cccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCC-hHhHHHHH
Q 015811 128 RTGHTIVALNLFKEMTNGNGEI-GVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE-----N-LNPN-VVTYTSLI 199 (400)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~ 199 (400)
..|++++|+.++++........ +...+....+++.+..+|...|++++|..++++.... | ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3577889999888876532211 1112223467888888999999999999988887642 2 1222 35678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 015811 200 HGFCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~ 220 (400)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888887664
No 221
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.02 E-value=0.011 Score=41.55 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=83.2
Q ss_pred CCCCcchHHHHHHHHHccCCh------hHHHHHHHHHHhCCCCCCHH-hHHHHHH------HHHhcCChhhHHHHHHHHH
Q 015811 7 SPPPVSSFNILLGCLAKNKHY------DTVLSLFKRLNSIGLFPDLY-TYSILIN------CFCKMGQVSLGFVIFGRIL 73 (400)
Q Consensus 7 ~p~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~g~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~ 73 (400)
.|.|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|...+. .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 467889999999999999999 8999999998764 455421 1222211 1234589999999999998
Q ss_pred hccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 74 RSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+..-. =...|......-.++|+...|.+++.+.+..+.. +...+...+.
T Consensus 88 ~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 88 ANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred HHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 75323 3777888888888999999999999999988744 3344444443
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.74 E-value=0.029 Score=37.39 Aligned_cols=62 Identities=15% Similarity=0.020 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcc------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 49 YSILINCFCKMGQVSLGFVIFGRILRSC------FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 49 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
+..+...+...|++..|..+|+...+.. ..+...++..+..++.+.|+++.|...+++..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344444444444444444444443321 0123344444555555555555555555555443
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.076 Score=38.93 Aligned_cols=101 Identities=10% Similarity=0.130 Sum_probs=55.3
Q ss_pred HHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 015811 55 CFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIV 134 (400)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 134 (400)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344566666666665543 2455666666666666666666666665432 2334444555566555
Q ss_pred HHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 015811 135 ALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ 182 (400)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (400)
..++-+.....+ -++....++.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g------------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 554444444333 244445555556666666666643
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.69 E-value=0.045 Score=51.90 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=24.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811 92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEM 142 (400)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 142 (400)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456666655553321 24455566666666666666666665554
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.64 E-value=0.017 Score=38.56 Aligned_cols=67 Identities=7% Similarity=0.002 Sum_probs=56.6
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIG------LFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC 76 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 76 (400)
++.-+-.+...+.+.+++..|...|+...+.- ..+....+..+..++.+.|+++.|...++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44566788999999999999999999987631 13457789999999999999999999999999864
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.57 E-value=0.073 Score=50.46 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=69.2
Q ss_pred HHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 015811 55 CFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIV 134 (400)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 134 (400)
.....|+++.|.++.+. ..+...|..+...+.+.++++.|++.|.++.. |..+...+...|+.+.
T Consensus 661 ~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEG 725 (814)
T ss_dssp HHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHH
T ss_pred hhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHH
Confidence 34556677777666433 23678999999999999999999999998752 3455555666777777
Q ss_pred HHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811 135 ALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQM 183 (400)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (400)
..++.+.....+ -++....++.+.|++++|.+++.++
T Consensus 726 ~~~~~~~a~~~~------------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 726 LVTLAKDAETTG------------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC------------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666665555443 2344455566667777777766554
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.24 E-value=0.072 Score=42.55 Aligned_cols=84 Identities=11% Similarity=0.004 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc-cchHH
Q 015811 279 NRVKELFVSMESMGCKHD---DFSYNILINGYCK-----NKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE-IRQAE 349 (400)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~ 349 (400)
..|...+++..+.+ |+ ...|..+...|.. -|+.++|.+.|++.++....-+..++..+...++. .|+.+
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 34444444444442 22 3345555555555 25555555555555544111123444444444444 25555
Q ss_pred HHHHHHHHHhhCCCC
Q 015811 350 RALKLFVEMQGNDVA 364 (400)
Q Consensus 350 ~a~~~~~~~~~~~~~ 364 (400)
++.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 555555555554443
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.22 Score=36.47 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=94.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR 96 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (400)
-.....+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 345667899999999998776 3788999999999999999999999988643 3455566667888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHH
Q 015811 97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKA 176 (400)
Q Consensus 97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 176 (400)
.+...++-+.....| -++.....+...|+++++.++|.+... +..........|-.+.|
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------------~~eA~~~A~t~g~~~~a 134 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------------LPLAYAVAKANGDEAAA 134 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------------hHHHHHHHHHcCcHHHH
Confidence 877776666655544 356666677788999999999876432 11122222335666777
Q ss_pred HHHHHHH
Q 015811 177 KELFLQM 183 (400)
Q Consensus 177 ~~~~~~~ 183 (400)
.++.+.+
T Consensus 135 ~~~~~~~ 141 (177)
T 3mkq_B 135 SAFLEQA 141 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7776655
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.22 E-value=0.069 Score=36.58 Aligned_cols=96 Identities=16% Similarity=0.066 Sum_probs=67.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh---HHHHHHHHHhccCC-ccHHHHHHHHHHHH
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSL---GFVIFGRILRSCFA-PNVVTFTSLIKGLC 92 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 92 (400)
++..-........+.+-|++....| .++..+-..+..++.++.+... ++.+++.+.+.+.+ ......-.|.-++.
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 3344444455666677777666655 4788887888888888876665 88888888876411 24455556777888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC
Q 015811 93 AESRIVEAAALFTKLKAFGCEPN 115 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~ 115 (400)
+.|++++|.+.++.+++. .|+
T Consensus 86 klg~Y~~A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTT
T ss_pred HhhhHHHHHHHHHHHHHh--CCC
Confidence 999999999999988887 454
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.21 E-value=0.87 Score=43.17 Aligned_cols=312 Identities=12% Similarity=0.062 Sum_probs=162.2
Q ss_pred HHhcCChhhHHHHHHHHHhcc--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-----CChhhHHHHHHHH
Q 015811 56 FCKMGQVSLGFVIFGRILRSC--FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGC--E-----PNVITYNTLINGL 126 (400)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~~ 126 (400)
....|+.++++.++...+..+ ..+....=..+.-+....|...++..++.......- . +....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 456778888877777665421 111222223333444555555567777776654320 0 1111122333333
Q ss_pred HhcCC-hHHHHHHHHHHHcCCCcccccccCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH--HHH
Q 015811 127 CRTGH-TIVALNLFKEMTNGNGEIGVVFKPNT--VTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSL--IHG 201 (400)
Q Consensus 127 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~ 201 (400)
+-.|. -+++.+.+..+.... .+.. ..-..+...+.-.|+.+....++..+.+.. +......+ .-+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-------~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLG 533 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-------SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLA 533 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHH
Confidence 33343 245566666655432 1111 111233344556678777777777766532 23333333 334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccH--HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChH
Q 015811 202 FCHANDWNEAKGLLIEMVDQGVQPNVVSS--NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKIN 279 (400)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 279 (400)
+...|+.+.+..+++.+.... .|....- ..+.-+|+..|+.....++++.+.... ..+......+.-++...|+.+
T Consensus 534 ll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 534 LINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 446788888888888877642 2222211 223446778888877777888887643 233333444444555677777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHhhhhhCCCCcCHHHHHHHHHH--Hhccc-------hHH
Q 015811 280 RVKELFVSMESMGCKHDDFSYNILINGYCKNKEV-EEALSLYNELPFKGIKPTVVTYNTLFHG--LFEIR-------QAE 349 (400)
Q Consensus 280 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~-------~~~ 349 (400)
.+.++++.+.+.+ .|....-..+.-+....|.. .++..++..+... +|..+-...+.+ ..-.| +..
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva 687 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVA 687 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHH
Confidence 7777777666654 45554444444455545443 6778888888753 344433333322 22222 344
Q ss_pred HHHHHHHHHhhC-CCCCChhhHHHHHHHhhcCCcc
Q 015811 350 RALKLFVEMQGN-DVAADTCTYRTFIDGLCVRPQV 383 (400)
Q Consensus 350 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 383 (400)
..++.+...... .-.++......+..+....|.-
T Consensus 688 ~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 688 DINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 444444444332 2234455555666666666543
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.13 E-value=1.1e-06 Score=74.23 Aligned_cols=265 Identities=12% Similarity=0.102 Sum_probs=146.0
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
.+..|+.|..+..+.+...+|++.|-+ ..|+..|..++.+..+.|.+++-...+....+.. -++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 345677777777777777777655422 1244556677777777777777777666555442 23344456777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (400)
+|++.++..+-++++ -.|+..-...+..-|...|.++.|.-+|..+.+. ..|..++.+
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------------akLAstLV~ 182 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------------GRLASTLVH 182 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------------TTTSSSSSS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------------HHHHHHHHH
Confidence 777777654433222 1355555566666666667666666555544332 223333445
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHH
Q 015811 170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRL 249 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 249 (400)
.|++..|.+.-++ .-++.||..+-.+|...+.+.-|.-.--.++-. ......++..|-..|.+++.+.+
T Consensus 183 L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 183 LGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp CSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555554433222 125567777777777777766655444333322 22233455566677777777777
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH-hcCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 015811 250 LDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME-SMGCKH------DDFSYNILINGYCKNKEVEEAL 317 (400)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~A~ 317 (400)
++...... +.....|+-|.-.|++- ++++..+.++..- +.+++. ....|..++-.|.+-.+++.|.
T Consensus 252 lEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 252 LEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 77666433 45566677666666654 3444333333221 111111 1234666666666666666554
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.05 E-value=0.091 Score=41.99 Aligned_cols=85 Identities=14% Similarity=0.249 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhc-----CChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc-CCH
Q 015811 27 YDTVLSLFKRLNSIGLFPD---LYTYSILINCFCKM-----GQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE-SRI 97 (400)
Q Consensus 27 ~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 97 (400)
...|..++++..+.. |+ ...|..+...|.+. |+.++|.+.|++.++.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 467888888888764 55 56889999999884 99999999999999986433477788888888885 999
Q ss_pred HHHHHHHHHHHHcCCC
Q 015811 98 VEAAALFTKLKAFGCE 113 (400)
Q Consensus 98 ~~a~~~~~~~~~~~~~ 113 (400)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999987544
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.96 E-value=0.098 Score=35.84 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHhhhhhCCCCc--CHHHHHHHHHHHhccchHHHHHH
Q 015811 279 NRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEE---ALSLYNELPFKGIKP--TVVTYNTLFHGLFEIRQAERALK 353 (400)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~ 353 (400)
..+.+-|......| .++..+--.+..++++..+... ++.+++.+...+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444444444444 3555555556666666665444 666666665542 12 22233334446667777777777
Q ss_pred HHHHHhh
Q 015811 354 LFVEMQG 360 (400)
Q Consensus 354 ~~~~~~~ 360 (400)
.++.+++
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.87 E-value=0.28 Score=34.61 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=25.2
Q ss_pred CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811 241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG 292 (400)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (400)
+++++|.++|+.+.+.+-.- ...|....+.-.++|+...|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554332111 3444444444455555555555555555544
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.23 E-value=0.46 Score=32.84 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811 263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI 328 (400)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 328 (400)
..++..+......|.-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34455555566666666666666664332 255666666666666666666666666666666554
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.32 Score=45.04 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=80.5
Q ss_pred HHHHHHHHccCC-hhHHHHHHHHHHhCCCCCCHHhH--HHHHHHHHhcCC-hhhHHHHHHHHHhc------cCCc-c---
Q 015811 15 NILLGCLAKNKH-YDTVLSLFKRLNSIGLFPDLYTY--SILINCFCKMGQ-VSLGFVIFGRILRS------CFAP-N--- 80 (400)
Q Consensus 15 ~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~--- 80 (400)
..++..+...++ ++.|+.+|+++.+.. |....+ ..++..+...++ --+|.+++.+.++. ...+ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344555555666 588999999998764 433332 223333222222 22345544444321 0111 1
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 015811 81 -------VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMT 143 (400)
Q Consensus 81 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 143 (400)
......-.+.+...|+++.|+.+-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1123333456778999999999999998873 5567899999999999999999999998874
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.06 E-value=2.4 Score=40.27 Aligned_cols=265 Identities=11% Similarity=0.023 Sum_probs=143.2
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCChhhHHHHHHHHHhccC-------CccHHHHHHHH--H
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPDLY--TYSILINCFCKMGQVSLGFVIFGRILRSCF-------APNVVTFTSLI--K 89 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~--~ 89 (400)
....|+.++++.++......+...+.. .-..+.-+....|..+++..++...+...- .+....-..+. .
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 456788888888877655421112222 223333345566666677887777665321 01112222222 2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811 90 GLCAESRIVEAAALFTKLKAFGCEPNVITYN--TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL 167 (400)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (400)
++.-.++ +++.+.+..+.... .+...... ++...+.-.|+.+....++..+.+.. ..+..-...+.-++
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-------~e~vrR~aalgLGl 534 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-------HGNITRGLAVGLAL 534 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHH
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-------cHHHHHHHHHHHHh
Confidence 3333344 34555555555431 11111122 23334556778777778887766532 11222223333345
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh
Q 015811 168 CKEGFVDKAKELFLQMKYENLNPNVVTYT--SLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN 245 (400)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (400)
...|+.+.+..+++.+.... .|....-. .+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 57789999998888887642 22222222 23445677888888888988887652 2233333333344556788888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhcCCCCCHHHH
Q 015811 246 ASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI-NRVKELFVSMESMGCKHDDFSY 300 (400)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~ 300 (400)
+.++++.+.+.+ .|....-..+..+....|.. .++.+.+..+.. .++..+-
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 888887776654 45444444444455545544 577788888865 3454443
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.83 E-value=0.62 Score=32.24 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 015811 118 TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL 188 (400)
Q Consensus 118 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (400)
.+...+..+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..++.+++.++.+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-------~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-------NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444455555555555555553322 144455555555555555555555555555555443
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.66 E-value=1.2e-06 Score=74.17 Aligned_cols=204 Identities=11% Similarity=0.149 Sum_probs=120.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 015811 156 NTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMN 235 (400)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 235 (400)
.+..|+.+..+....+...+|++.|-+. -|+..|..++.+..+.|.+++-...+....+. .-++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3456777777777777777766655322 25556777777777888888877777666554 224455567777
Q ss_pred HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--------------------CCC
Q 015811 236 ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG--------------------CKH 295 (400)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 295 (400)
+|++.++..+..+++. .|+..-...+..-|...|.++.|.-+|..+.... -..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7888777665444332 3444455556666666666666655554432210 023
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015811 296 DDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFID 375 (400)
Q Consensus 296 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (400)
++.||-.+-.+|...+++.-|...--.++-+ |+ ....++..|-..|.+++.+.+++.-... -.....+|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 5567777777777777766654433333211 11 1233555677777777777777766532 1234556666666
Q ss_pred HhhcC
Q 015811 376 GLCVR 380 (400)
Q Consensus 376 ~~~~~ 380 (400)
.|++-
T Consensus 272 LYsKY 276 (624)
T 3lvg_A 272 LYSKF 276 (624)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 66553
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.07 E-value=0.3 Score=41.54 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh-----CCCCcCHHHHH
Q 015811 265 YNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF-----KGIKPTVVTYN 336 (400)
Q Consensus 265 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~ 336 (400)
...++..+...|+++++...+..+.... +.+...|..++.++...|+..+|++.|++..+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445556666777777777777766654 55666777777777777777777777776543 37777666533
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.04 E-value=1.8 Score=37.57 Aligned_cols=172 Identities=12% Similarity=0.063 Sum_probs=98.4
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHH----HhcCChhhH--HHHHHHHHh--cc-CCc
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSI-GLFPDLYTYSILINCF----CKMGQVSLG--FVIFGRILR--SC-FAP 79 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~----~~~~~~~~a--~~~~~~~~~--~~-~~~ 79 (400)
+......++..|...|+++...+.+..+.+. |..+ ..-..+++.+ ......+.. ..+.+.+.. .| +-.
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kifl 132 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFV 132 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHH
Confidence 3445566777777777777776666655432 3221 1222222222 222322211 111111100 00 000
Q ss_pred ---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccc
Q 015811 80 ---NVVTFTSLIKGLCAESRIVEAAALFTKLKAF--GCEPN---VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGV 151 (400)
Q Consensus 80 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (400)
.......|...+...|++.+|.+++..+... |.... ...+...++.|...+++..|..+++++........
T Consensus 133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~- 211 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP- 211 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-
Confidence 1233456788899999999999999998743 21111 34566778889999999999999988743210000
Q ss_pred cccCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811 152 VFKPN--TVTYSIIIDGLCKEGFVDKAKELFLQMKY 185 (400)
Q Consensus 152 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (400)
.+|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 212 -~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 212 -KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1122 24556677778888999999888877754
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.82 E-value=3.8 Score=37.24 Aligned_cols=309 Identities=10% Similarity=-0.009 Sum_probs=159.2
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc-cHHHHHHHHHHHHhcCCHH
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP-NVVTFTSLIKGLCAESRIV 98 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 98 (400)
..+.|++..+..+...+... +.. -..|..+...+ .....+ ++-..+.+..-.| ....-...+..+.+.+++.
T Consensus 16 a~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHH
Confidence 34568888777776655321 211 11232222211 111233 3333333332122 2333455667777788887
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHH--H
Q 015811 99 EAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDK--A 176 (400)
Q Consensus 99 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a 176 (400)
.....+.. .+.+...-.....+....|+..+|......+-..+ ...+..+..++..+.+.|.... .
T Consensus 90 ~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-------~~~p~~c~~l~~~~~~~g~lt~~~~ 157 (618)
T 1qsa_A 90 GLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-------KSQPNACDKLFSVWRASGKQDPLAY 157 (618)
T ss_dssp HHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-------SCCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-------CCCcHHHHHHHHHHHHCCCCCHHHH
Confidence 76664443 14455555556777888899888888888877665 4566778888888887665433 3
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHH-----------Hhc-CCHHHHHHHHHHHHHCCCCCCccc---HHHHHHHHHhcC
Q 015811 177 KELFLQMKYENLNPNVVTYTSLIHGF-----------CHA-NDWNEAKGLLIEMVDQGVQPNVVS---SNVIMNELCKNG 241 (400)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~-~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 241 (400)
..=++.+...| +...-..++... ... .+...+..... . ..++... +...+.-+.+ .
T Consensus 158 ~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 158 LERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFAR---T--TGATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHh---c--cCCChhhHHHHHHHHHHHHh-c
Confidence 33333333332 111111111111 000 11111111111 1 1222211 1112222333 3
Q ss_pred CchhHHHHHHHHHhCCCCCcHHHH----HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015811 242 KMDNASRLLDLMVQCDVRPNAFTY----NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEAL 317 (400)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 317 (400)
+.+.|...+....+.. ..+.... ..++......+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 7788888888776533 2233222 22333334445344555566554443 344444445555556779999999
Q ss_pred HHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 318 SLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 318 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
..|+.|...... .....--+..++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999988764211 233233445577778999999998888753
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.70 E-value=3.2 Score=36.02 Aligned_cols=195 Identities=9% Similarity=0.001 Sum_probs=108.5
Q ss_pred cCChhHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH----hc
Q 015811 24 NKHYDTVLSLFKRLNSI-----GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC----AE 94 (400)
Q Consensus 24 ~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 94 (400)
.|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+.+..... ......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888877666532 234456778888999999999998888777666532221 122233333222 22
Q ss_pred CCHHH--HHHHHHHHHH--cC-CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHH
Q 015811 95 SRIVE--AAALFTKLKA--FG-CEP---NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDG 166 (400)
Q Consensus 95 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (400)
...+. -..+.+.+.. .| +-. .......|...+...|++.+|.+++..+...-.... ...--...+...++.
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~-~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM-EMSEKIQFILEQMEL 186 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHH
Confidence 22221 1112211110 01 000 112234567778888888888888888754220000 000112456666778
Q ss_pred HHhcCChHHHHHHHHHHHH----cCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 167 LCKEGFVDKAKELFLQMKY----ENLNPNV--VTYTSLIHGFCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (400)
|...+++..|..++.++.. ....|+. ..+...+..+...+++.+|...|.++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888888888888877642 1112221 3345556666677888887777766654
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.66 E-value=0.43 Score=40.60 Aligned_cols=109 Identities=12% Similarity=0.104 Sum_probs=73.0
Q ss_pred CcchHHHHHHHHH---ccCChhHHHHHHHHHHhC--CCC-CC------H------------HhHHHHHHHHHhcCChhhH
Q 015811 10 PVSSFNILLGCLA---KNKHYDTVLSLFKRLNSI--GLF-PD------L------------YTYSILINCFCKMGQVSLG 65 (400)
Q Consensus 10 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~--g~~-~~------~------------~~~~~l~~~~~~~~~~~~a 65 (400)
|...|..++.... ..|+.+.|.+.++++... |-. ++ . .+...++..+...|+++++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4445555554432 357888999999888764 311 11 0 1223344556678888888
Q ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhH
Q 015811 66 FVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKA-----FGCEPNVITY 119 (400)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 119 (400)
...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 191 ~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 191 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 88888877664 44777888888888888888888888887653 4777777653
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.59 E-value=3.2 Score=41.08 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=76.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccc-------------
Q 015811 86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVV------------- 152 (400)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------- 152 (400)
.++..+...+..+.+.++.... +.+...--.+..++...|++++|.+.|.+....-......
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3444455555555554433222 3344444566778889999999999998764321100000
Q ss_pred ---ccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 015811 153 ---FKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV----VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP 225 (400)
Q Consensus 153 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 225 (400)
...-..-|..++..+.+.+.++.+.++-...++...+.+. ..|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0001123455555666666666666655555443211111 1355556666666666666666655544321
Q ss_pred CcccHHHHHHHHHhcCC
Q 015811 226 NVVSSNVIMNELCKNGK 242 (400)
Q Consensus 226 ~~~~~~~l~~~~~~~~~ 242 (400)
-...+..++..++..|.
T Consensus 970 r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 23344444444444443
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.49 E-value=3.3 Score=41.04 Aligned_cols=145 Identities=15% Similarity=0.097 Sum_probs=92.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC-----------------
Q 015811 15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF----------------- 77 (400)
Q Consensus 15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------- 77 (400)
..++..+.+.+.++-+.++.... +.+...-..+..++...|++++|.+.|++... ++
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 34566666777777766654332 23444445667788889999999999976532 11
Q ss_pred ------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 015811 78 ------APNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV----ITYNTLINGLCRTGHTIVALNLFKEMTNGNG 147 (400)
Q Consensus 78 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 147 (400)
..-...|..++..+-+.+.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 011245677788888888888888777766654322221 246777888888888888888887776532
Q ss_pred cccccccCChhhHHHHHHHHHhcCCh
Q 015811 148 EIGVVFKPNTVTYSIIIDGLCKEGFV 173 (400)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (400)
.-......++...+..+..
T Consensus 969 -------~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 969 -------LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp -------SCHHHHHHHHHHHHHHCCH
T ss_pred -------HHHHHHHHHHHHHHhCCCh
Confidence 2334555565555555543
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.37 E-value=2.1 Score=39.80 Aligned_cols=127 Identities=13% Similarity=0.003 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCC-hhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc------CCCCCh-----
Q 015811 50 SILINCFCKMGQ-VSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES-RIVEAAALFTKLKAF------GCEPNV----- 116 (400)
Q Consensus 50 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~~~----- 116 (400)
..++..+...++ .+.|..+++++....+..+......++..+...+ +--+|.+++.+..+. ..++..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344444555666 5889999999988743222222233444433333 233455555554321 112111
Q ss_pred ------hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811 117 ------ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQM 183 (400)
Q Consensus 117 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (400)
.....-...+...|+++-|+.+-++..... |.+-.+|..|..+|...|+++.|+-.++-+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122223445667899999999999998853 556789999999999999999999988876
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.55 E-value=1.8 Score=29.88 Aligned_cols=66 Identities=9% Similarity=-0.016 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 295 HDDFSYNILINGYCKNKE---VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
|+..+--.+..++++..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443334444444333 233444444444432111122333333445555555555555555544
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.36 E-value=1.5 Score=28.48 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811 27 YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILR 74 (400)
Q Consensus 27 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 74 (400)
.=++.+-++.+...+..|++......+++|.+.+++..|..+++-+..
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555555555555555556666555666666555555544
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.34 E-value=2.5 Score=29.13 Aligned_cols=74 Identities=18% Similarity=0.068 Sum_probs=52.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCh---hhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 015811 41 GLFPDLYTYSILINCFCKMGQV---SLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV 116 (400)
Q Consensus 41 g~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 116 (400)
+..|+..+--.+..+++++.+. .+++.+++.+.+.+.......+-.|.-++.+.|+++.|.+..+.+.+. .|+-
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 3366777777777777777654 467788888887653334556666777888888888888888888876 4543
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.82 E-value=1.9 Score=31.09 Aligned_cols=65 Identities=9% Similarity=-0.049 Sum_probs=45.5
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCC-CCCC-------HHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811 10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIG-LFPD-------LYTYSILINCFCKMGQVSLGFVIFGRILR 74 (400)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 74 (400)
+..++-.-+..+...+.++.|+-+.+.+.... ..|+ ..++..+.+++...|++.+|...|++.++
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34455666778888899999988888765421 1233 23567777888889999999999988754
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.54 E-value=3.1 Score=28.70 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=49.3
Q ss_pred ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811 61 QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL 126 (400)
Q Consensus 61 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (400)
|.-+..+-++.+...+..|++.+..+.+++|.+.+|+..|.++|+-++..- .+....|..+++-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHH
Confidence 344566677777777888899999999999999999999999998887652 34455677776653
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.07 E-value=4.1 Score=29.41 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811 301 NILINGYCKNKEVEEALSLYNELPFK 326 (400)
Q Consensus 301 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 326 (400)
-.+..+|.+.+++++|+.+++.+...
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 34667777777777777777776544
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.82 E-value=2.8 Score=27.19 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=49.9
Q ss_pred ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811 61 QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN 124 (400)
Q Consensus 61 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 124 (400)
+.-+..+-++.+......|++.+..+.+++|.+.+++..|.++|+-++..- ......|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444667777788888889999999999999999999999999999988652 333455766654
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.76 E-value=3.8 Score=28.65 Aligned_cols=66 Identities=9% Similarity=-0.016 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811 295 HDDFSYNILINGYCKNKE---VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360 (400)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (400)
|+..+--.+..++.+..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443344444444433 233444555444432111222222333355555555555555555554
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.71 E-value=7.7 Score=33.46 Aligned_cols=120 Identities=7% Similarity=-0.059 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHhCC-CCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc--CCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811 27 YDTVLSLFKRLNSIG-LFP-DLYTYSILINCFCKMGQVSLGFVIFGRILRSC--FAPNVVTFTSLIKGLCAESRIVEAAA 102 (400)
Q Consensus 27 ~~~a~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
.++-.+......+.. ... -..++..+...+.+.|+++.|.+.|.++.... ..--...+-..++.+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 444444445444422 122 23467778888888899999998888887642 23345667778888888889988888
Q ss_pred HHHHHHHcC-CCCChhhHHH----HHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 103 LFTKLKAFG-CEPNVITYNT----LINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 103 ~~~~~~~~~-~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
.+.+....- -.++....+. -...+...+++..|-+.|-+.....
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 888875431 0122222111 1122345678888887776654433
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.17 E-value=9.4 Score=31.08 Aligned_cols=18 Identities=11% Similarity=-0.191 Sum_probs=12.5
Q ss_pred HhccchHHHHHHHHHHHh
Q 015811 342 LFEIRQAERALKLFVEMQ 359 (400)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~ 359 (400)
|.-.++...|..++....
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 445577888888877654
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.06 E-value=5.2 Score=27.99 Aligned_cols=72 Identities=17% Similarity=0.050 Sum_probs=54.7
Q ss_pred CCCHHhHHHHHHHHHhcCCh---hhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 015811 43 FPDLYTYSILINCFCKMGQV---SLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV 116 (400)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 116 (400)
.|+..+--.+..++.++.+. .+++.+++.+.+.+........-.|.-++.+.|++++|.++.+.+++. .|+-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 57777777778888887754 467888888888654445556666778888999999999999999887 5544
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.17 E-value=5.7 Score=27.43 Aligned_cols=51 Identities=10% Similarity=0.108 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 96 RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
|.-+..+-++.+....+.|++....+.+++|-+.+++..|.++|+-++.+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 334455566666666667777777777777777777777777777766554
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.86 E-value=12 Score=32.24 Aligned_cols=83 Identities=5% Similarity=-0.127 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHhccC-Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHH
Q 015811 62 VSLGFVIFGRILRSCF-AP-NVVTFTSLIKGLCAESRIVEAAALFTKLKAFG--CEPNVITYNTLINGLCRTGHTIVALN 137 (400)
Q Consensus 62 ~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 137 (400)
.++-.+......+... .. -..+...+...|.+.|+++.|.+.|.++...- ...-...+-.+++.+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4444444444444222 11 23466778899999999999999999998753 23345667788899999999999999
Q ss_pred HHHHHHc
Q 015811 138 LFKEMTN 144 (400)
Q Consensus 138 ~~~~~~~ 144 (400)
.+.++..
T Consensus 190 ~~~ka~~ 196 (429)
T 4b4t_R 190 KLEAVNS 196 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888754
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.69 E-value=6.5 Score=31.03 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=42.8
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 19 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
..+.+.|++++|++....-++.. +.|...-..+++.+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45667788888888887777765 557777777888888888888888877777765
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.85 E-value=13 Score=30.28 Aligned_cols=173 Identities=10% Similarity=0.075 Sum_probs=88.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCChhhHHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA----LFTKLKAFGCEPNVITYNTLI 123 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 123 (400)
.|.++..=|.+.+++++|.+++..-. ..+.+.|+...|-+ +++.+.+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44555555666667776666654322 22334455544443 345555667777777777777
Q ss_pred HHHHhcCChH-HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811 124 NGLCRTGHTI-VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF 202 (400)
Q Consensus 124 ~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (400)
..+......+ .=.++++++.......+....-++.....+...|.+.+++.+|...|-. +-.-+...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 6665532111 1123333332211000000133667778888888888888888776642 1111344455544444
Q ss_pred Hhc---CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 203 CHA---NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 203 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
... |...++- ...-. .+-.|...++...|..+++...
T Consensus 176 ~~~~~~~~~~e~d--------------lf~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTVA--------------EFFSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHHH--------------HHHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHH--------------HHHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 433 3333221 11111 2224556778888888777654
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.58 E-value=5.5 Score=25.77 Aligned_cols=78 Identities=9% Similarity=0.030 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015811 26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFT 105 (400)
Q Consensus 26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 105 (400)
..++|..+-+-+...+. ...+-..-+..+...|++++|..+.+..- .||...|.+|... +.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 45666666666665432 11111222234556677777766654432 4566666655443 5566666666665
Q ss_pred HHHHcC
Q 015811 106 KLKAFG 111 (400)
Q Consensus 106 ~~~~~~ 111 (400)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.69 E-value=5.2 Score=25.84 Aligned_cols=78 Identities=13% Similarity=0.063 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015811 26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFT 105 (400)
Q Consensus 26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 105 (400)
..++|..+-+-+...+. ...+-..-+..+...|++++|..+.+..- .||...|.+|... +.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 45667666666665442 11111222334556777777766554332 4666666655443 6666666666666
Q ss_pred HHHHcC
Q 015811 106 KLKAFG 111 (400)
Q Consensus 106 ~~~~~~ 111 (400)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666555
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.89 E-value=18 Score=29.68 Aligned_cols=173 Identities=10% Similarity=0.081 Sum_probs=87.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCChhhHHHHH
Q 015811 48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA----LFTKLKAFGCEPNVITYNTLI 123 (400)
Q Consensus 48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 123 (400)
+|.++..=|.+.+++++|.+++-.-. ..+.+.|+...+-+ +++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445555677788888777654322 12233444443333 335555666777776666666
Q ss_pred HHHHhcCChH-HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811 124 NGLCRTGHTI-VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF 202 (400)
Q Consensus 124 ~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (400)
..+......+ .=.++++++.......+....-++.....+...|.+.+++.+|...|- .|..++...|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 6665544311 112222222211100000023456677778888888888888877662 23333335665555444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811 203 CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254 (400)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (400)
...+...++ +...-.. +-.|...++...|..+++...
T Consensus 178 ~~~~~~~e~--------------dlfiaRa-VL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHTA--------------PLYCARA-VLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGGH--------------HHHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCccH--------------HHHHHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence 443322111 1122222 234566777777777665544
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.41 E-value=17 Score=27.17 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=44.6
Q ss_pred ccCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 015811 153 FKPNTVTYSIIIDGLCK--EGFVDKAKELFLQMKYENLNPN-VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP 225 (400)
Q Consensus 153 ~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 225 (400)
++-|..-....+...-. .++..+..++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+..|
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34455444444433322 3446677777777777654322 3456666667777778888888887777765555
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.89 E-value=11 Score=24.43 Aligned_cols=79 Identities=14% Similarity=0.024 Sum_probs=56.3
Q ss_pred CChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 015811 60 GQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLF 139 (400)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 139 (400)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+... .||...|.+|.. .+.|-.+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 367788888888777642 22222333456778999999998776654 678888876654 4788889998888
Q ss_pred HHHHcCC
Q 015811 140 KEMTNGN 146 (400)
Q Consensus 140 ~~~~~~~ 146 (400)
.++...+
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 8887776
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.11 E-value=11 Score=24.34 Aligned_cols=79 Identities=11% Similarity=0.003 Sum_probs=56.4
Q ss_pred CChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 015811 60 GQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLF 139 (400)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 139 (400)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+... .||...|.+|.. .+.|-.+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 467788888888777642 22222333456778999999998877654 688888876654 4778888888888
Q ss_pred HHHHcCC
Q 015811 140 KEMTNGN 146 (400)
Q Consensus 140 ~~~~~~~ 146 (400)
.++...+
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 8887766
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.02 E-value=22 Score=26.60 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC
Q 015811 275 TGKINRVKELFVSMESMGCK-HDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT 331 (400)
Q Consensus 275 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 331 (400)
.++...+.++|..|...|+- --...|......+...|++++|..+|+.-++.+..|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44477889999999877654 3466788888888899999999999999888877773
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.09 E-value=28 Score=27.28 Aligned_cols=47 Identities=9% Similarity=-0.026 Sum_probs=20.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHh
Q 015811 275 TGKINRVKELFVSMESMGCKHDDFS--YNILINGYCKNKEVEEALSLYN 321 (400)
Q Consensus 275 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~ 321 (400)
.++......+.+.+.+.|..++... -...+...+..|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3443334445555555554333211 1122333445566655555554
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=72.92 E-value=40 Score=28.09 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHhhhhhCCCCc
Q 015811 264 TYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE--VEEALSLYNELPFKGIKP 330 (400)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~p 330 (400)
....++.-|...++.++|...++++.... -........+..++-+.++ .+....++..+...|+-+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 35677777888888888888888875321 1122333444444444333 345667777777666553
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.43 E-value=35 Score=26.75 Aligned_cols=23 Identities=4% Similarity=0.086 Sum_probs=12.9
Q ss_pred HhcCCchhHHHHHHHHHhCCCCC
Q 015811 238 CKNGKMDNASRLLDLMVQCDVRP 260 (400)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~ 260 (400)
+..++.....++++.+.+.|..+
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCS
T ss_pred HHccccchHHHHHHHHHHcCCCC
Confidence 44555555556666666665443
No 273
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=70.07 E-value=24 Score=24.25 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHhhhhhCCCC
Q 015811 264 TYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE--VEEALSLYNELPFKGIK 329 (400)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~ 329 (400)
....++.-|...|+.++|...++++.... -........+..++-+.++ .+.+..++..+...|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45677888888899999998888875211 1122333344444444432 35566777777666554
No 274
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=69.46 E-value=23 Score=28.76 Aligned_cols=64 Identities=9% Similarity=0.219 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND--WNEAKGLLIEMVDQGVQ 224 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 224 (400)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 456777788889999999888887521111 11223333344444322 45566777777766543
No 275
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=68.83 E-value=9.6 Score=29.80 Aligned_cols=119 Identities=10% Similarity=-0.068 Sum_probs=63.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHh-------HHHHHHHHH--hcCChhhHHHHHHHHHhcc---------CC
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYT-------YSILINCFC--KMGQVSLGFVIFGRILRSC---------FA 78 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~ 78 (400)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34455678999998888888777665555332 233333322 5677777766666543311 00
Q ss_pred -ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh----------------HHHHHHHHHhcCChHHHHHHHH
Q 015811 79 -PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT----------------YNTLINGLCRTGHTIVALNLFK 140 (400)
Q Consensus 79 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~ 140 (400)
.+..-.+ .+...+..|+.+- .+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 88 ~~d~~g~t-~L~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 88 DVYYRGQT-ALHIAIERRCKHY----VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CSSEESBC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCC-HHHHHHHcCCHHH----HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 0111122 3344456677654 444455665555432 2234455566777665555544
No 276
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=68.02 E-value=35 Score=25.46 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=8.2
Q ss_pred CChHHHHHHHHHHHHcC
Q 015811 171 GFVDKAKELFLQMKYEN 187 (400)
Q Consensus 171 ~~~~~a~~~~~~~~~~~ 187 (400)
.+++.|+-++..|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44444444444444444
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.54 E-value=57 Score=27.66 Aligned_cols=166 Identities=12% Similarity=0.026 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhh---HHHHHHHHHhc-CChHHHHHHHHHHHcCCCcccccccC
Q 015811 81 VVTFTSLIKGLCAESRIVEAAALFTKLKAF-GCEPNVIT---YNTLINGLCRT-GHTIVALNLFKEMTNGNGEIGVVFKP 155 (400)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~---~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (400)
......|...|.+.|+.++..+++...... +.-+...+ ...++..+... +..+.-.++..+..+.. ..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-------~~ 91 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-------KQ 91 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-------HH
Confidence 456677888888999988888888776532 11122222 34556666553 44555556666655543 22
Q ss_pred ChhhH------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--C
Q 015811 156 NTVTY------SIIIDGLCKEGFVDKAKELFLQMKYENLNPN-----VVTYTSLIHGFCHANDWNEAKGLLIEMVDQ--G 222 (400)
Q Consensus 156 ~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~ 222 (400)
...+| ..++..|...|++.+|.+++..+.+.=...| ...+..-+..|...+++.++...+...... .
T Consensus 92 ~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 92 EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 22333 1467778888888888888877766411112 133455566677778888888888776543 2
Q ss_pred CCCCcccHHHH----HHHHH-hcCCchhHHHHHHHH
Q 015811 223 VQPNVVSSNVI----MNELC-KNGKMDNASRLLDLM 253 (400)
Q Consensus 223 ~~~~~~~~~~l----~~~~~-~~~~~~~a~~~~~~~ 253 (400)
+.+++.....+ ...+. ..+++..|...|-+.
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22333332222 22345 677888887776554
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=67.45 E-value=41 Score=26.02 Aligned_cols=22 Identities=0% Similarity=0.105 Sum_probs=15.0
Q ss_pred HHHHHHccCChhHHHHHHHHHH
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLN 38 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~ 38 (400)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3566677777777777777654
No 279
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=67.14 E-value=29 Score=24.62 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHhhhhhCCCCc
Q 015811 264 TYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE--VEEALSLYNELPFKGIKP 330 (400)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~p 330 (400)
....++.-|...|+.++|...++++.... -........+..++-+.++ .+.+..++..+...++-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45678888989999999999999885311 1122333444444544332 455667777777666543
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.77 E-value=19 Score=31.75 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=37.6
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhc-cCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRS-CFAPNV---VTFTSLIKGLCAESRIVEAAALFTKLKAF 110 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 110 (400)
...++.+++.|...+.++.|..+..+..-- ...++. ..+--+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 556677777777777777777777665310 001111 12223455666677777777777766544
No 281
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=66.61 E-value=38 Score=25.29 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=50.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC-----chhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCC
Q 015811 203 CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK-----MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGK 277 (400)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (400)
.+-.+.+.|+-++.+|++.| .|....-..++.+.-.-|. ...|...++.....|.+--...+...+..++..-+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPK 103 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPK 103 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc
Confidence 44578999999999999999 6666666666666665554 23455666777777755444444444444444444
Q ss_pred hHHHHHHHH
Q 015811 278 INRVKELFV 286 (400)
Q Consensus 278 ~~~a~~~~~ 286 (400)
...+...++
T Consensus 104 SNs~y~A~~ 112 (204)
T 2r9g_A 104 SNSAYMALD 112 (204)
T ss_dssp CCHHHHHHH
T ss_pred cHHHHHHHH
Confidence 434433333
No 282
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=66.29 E-value=34 Score=25.13 Aligned_cols=15 Identities=7% Similarity=0.388 Sum_probs=7.2
Q ss_pred HHHHHHHHHCCCCCC
Q 015811 212 KGLLIEMVDQGVQPN 226 (400)
Q Consensus 212 ~~~~~~~~~~~~~~~ 226 (400)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 444455555554443
No 283
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.94 E-value=87 Score=28.53 Aligned_cols=116 Identities=8% Similarity=-0.041 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811 171 GFVDKAKELFLQMKYENLNPNVVTYT----SLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA 246 (400)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 246 (400)
.+.+.|...+....+... .+..... .+.......+...++...+...... ..+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 367778887777754331 2322222 2222223334244555555554433 23333344444555567888888
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811 247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMES 290 (400)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (400)
...|..|.... .......-.+.+++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887775532 12333445566677778888888888777653
No 284
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=63.89 E-value=43 Score=24.95 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=16.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 015811 170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHG 201 (400)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 201 (400)
-.+++.|+-++..|++.|-.|....-..++-+
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35666666666666665544443333333333
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.67 E-value=49 Score=25.58 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=57.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc--cCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811 52 LINCFCKMGQVSLGFVIFGRILRS--CFAP----NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING 125 (400)
Q Consensus 52 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (400)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 467788899999999999887652 2221 11222334444444444445555555553 2 4556667778888
Q ss_pred HHhcCChHHHHHHHHHHH
Q 015811 126 LCRTGHTIVALNLFKEMT 143 (400)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~ 143 (400)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 999999999999886654
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.61 E-value=37 Score=24.11 Aligned_cols=47 Identities=9% Similarity=0.129 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015811 176 AKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG 222 (400)
Q Consensus 176 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 222 (400)
..++|..|...|+-. -...|......+...|++.+|.++++.-++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444455554443321 12334444444444555555555555554443
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.36 E-value=37 Score=24.08 Aligned_cols=50 Identities=12% Similarity=0.103 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc
Q 015811 281 VKELFVSMESMGCKH-DDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP 330 (400)
Q Consensus 281 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 330 (400)
+.++|..|...|+-. -...|......+...|++++|..+|+.-++.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666665554332 34455555666666666666666666666655555
No 288
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=63.19 E-value=44 Score=24.88 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=32.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC-----chhHHHHHHHHHhCC
Q 015811 203 CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK-----MDNASRLLDLMVQCD 257 (400)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 257 (400)
.+-.+.+.|+-++.+|++.|..|....-..++.+.-.-|. ...|...++.....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 3457888888888888888866655555555555544443 123444444445555
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.17 E-value=76 Score=26.91 Aligned_cols=292 Identities=11% Similarity=-0.006 Sum_probs=156.8
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcc-CCc---cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhH-
Q 015811 46 LYTYSILINCFCKMGQVSLGFVIFGRILRSC-FAP---NVVTFTSLIKGLCAE-SRIVEAAALFTKLKAFGCEPNVITY- 119 (400)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 119 (400)
..+...+...|.+.|+.++..+++......= .-+ .......++..+... +..+.-.++..+..+.. .-+-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4567788899999999999999888765421 111 334566777777664 34455556666665542 1222333
Q ss_pred HH-H---HHHHHh-cCChHHHHHHHHHHHcCCCcccccccCCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHc--C
Q 015811 120 NT-L---INGLCR-TGHTIVALNLFKEMTNGNGEIGVVFKPNT-----VTYSIIIDGLCKEGFVDKAKELFLQMKYE--N 187 (400)
Q Consensus 120 ~~-l---~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~ 187 (400)
.. + +..+.- .|++.+|.+++..+.+.- ...|. ..+..-+..|...+++.++...+...... .
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~------~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLREL------KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------TTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------hccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 11 1 112222 689999999999999864 23232 23555667788999999999999887653 2
Q ss_pred CCCChHhHHHH----HHHHH-hcCCHHHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHhcCCchhHHHHHH-H-HHhC
Q 015811 188 LNPNVVTYTSL----IHGFC-HANDWNEAKGLLIEMVDQGVQPNVV----SSNVIMNELCKNGKMDNASRLLD-L-MVQC 256 (400)
Q Consensus 188 ~~~~~~~~~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~-~-~~~~ 256 (400)
+.+++..-..+ ...+. ..++|..|...|-+..+.--..... ....++-+..-.++..+...++. . ....
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~ 251 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY 251 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc
Confidence 22333332221 22345 6789999998887765321111111 11112222233344444444332 2 1222
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC----C-CcC
Q 015811 257 DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG----I-KPT 331 (400)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~-~p~ 331 (400)
..|....+..++.+| ..+++.....+++.... .+..|......+ ..+++.++.+. + +-+
T Consensus 252 -~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~pYs 315 (394)
T 3txn_A 252 -SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-------------GTLYDTMLEQNLCRIIEPYS 315 (394)
T ss_dssp -CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-------------HHHHHHHHHHHHHHHHTTCS
T ss_pred -CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-------------HHHHHHHHHHHHHHHhHhhc
Confidence 245555566666654 45677666666655432 234454421111 11111221110 0 112
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhhCC
Q 015811 332 VVTYNTLFHGLFEIRQAERALKLFVEMQGND 362 (400)
Q Consensus 332 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 362 (400)
..++..+...+.- ..+++...+-+|...|
T Consensus 316 rIsl~~iA~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 316 RVQVAHVAESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp EEEHHHHHHHHTC--CHHHHHHHHHHHHHTT
T ss_pred eeeHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 3344445444433 5678888888887543
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.73 E-value=61 Score=25.69 Aligned_cols=8 Identities=50% Similarity=0.734 Sum_probs=3.1
Q ss_pred hcCCchhH
Q 015811 239 KNGKMDNA 246 (400)
Q Consensus 239 ~~~~~~~a 246 (400)
..|+.+-+
T Consensus 170 ~~g~~~~v 177 (285)
T 3kea_A 170 KNGHVDMM 177 (285)
T ss_dssp HTTCHHHH
T ss_pred HcChHHHH
Confidence 33443333
No 291
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.24 E-value=71 Score=26.30 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCChHh
Q 015811 119 YNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELF----LQMKYENLNPNVVT 194 (400)
Q Consensus 119 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~ 194 (400)
|.++..-|.+.+++++|++++..-.. .+.+.|+...+-++- +...+.++++|...
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~ 96 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGAS 96 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 33444556677777777776654321 233334444433332 33344455666666
Q ss_pred HHHHHHHHHhcCCHH-HHHHHHHHHHH----CC--CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHH
Q 015811 195 YTSLIHGFCHANDWN-EAKGLLIEMVD----QG--VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNT 267 (400)
Q Consensus 195 ~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (400)
...++..+.....-+ .-..+++.+++ .| ..-|+.....+...|.+.+++.+|..-|- .+-.++...+..
T Consensus 97 ~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~ 172 (336)
T 3lpz_A 97 RGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLAR 172 (336)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHH
Confidence 556665555443211 11223333322 12 23356677778888888888888776662 122333456655
Q ss_pred HHHHHHcC
Q 015811 268 LMDGFCLT 275 (400)
Q Consensus 268 l~~~~~~~ 275 (400)
++.-+...
T Consensus 173 mL~ew~~~ 180 (336)
T 3lpz_A 173 MEYEWYKQ 180 (336)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55444433
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.32 E-value=70 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMK 184 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~ 184 (400)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567777888899999988888754
No 293
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=58.98 E-value=55 Score=24.65 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 015811 206 NDWNEAKGLLIEMVDQGVQP 225 (400)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~ 225 (400)
.+.+.|+-++.+|++.|..|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44555555555555544333
No 294
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=58.78 E-value=56 Score=24.63 Aligned_cols=71 Identities=13% Similarity=0.002 Sum_probs=44.8
Q ss_pred ChhhHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCC
Q 015811 156 NTVTYSIIIDGLC---KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND-----WNEAKGLLIEMVDQGVQPN 226 (400)
Q Consensus 156 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 226 (400)
+...+..+++++. +-.+++.|+-++..|++.|-.|....-..++-+.-.-|. ...|...++.....|.+-.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 3345555666665 458999999999999999877666555566655554443 3445555555555565433
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.45 E-value=55 Score=24.80 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=10.6
Q ss_pred HHccCChhHHHHHHHHHHhCC
Q 015811 21 LAKNKHYDTVLSLFKRLNSIG 41 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g 41 (400)
.++.|+.+.+..+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344555555555555444443
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.45 E-value=53 Score=23.66 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCC-----CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc-cHHHHHHHHHHHHhcCCHHHHHHH
Q 015811 30 VLSLFKRLNSIG-----LFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP-NVVTFTSLIKGLCAESRIVEAAAL 103 (400)
Q Consensus 30 a~~~~~~~~~~g-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 103 (400)
-..++++..+.- ..-|..-...-+. |+.. .+.+.++|..|...|+-. -...|......+-..|++.+|..+
T Consensus 42 L~~lLErc~~~f~~~~~YknD~RyLklWl~-ya~~--~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~I 118 (164)
T 2wvi_A 42 MSTLLERAVEALQGEKRYYSDPRFLNLWLK-LGRL--CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAI 118 (164)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHHH--CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhccCHHHHHHHHH-HHHh--cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455666665431 2335443333332 2222 245788999999887643 455678888888999999999999
Q ss_pred HHHHHHcCCCCChhh
Q 015811 104 FTKLKAFGCEPNVIT 118 (400)
Q Consensus 104 ~~~~~~~~~~~~~~~ 118 (400)
|..-++.+..|-...
T Consensus 119 y~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 119 FQEGIQQKAEPLERL 133 (164)
T ss_dssp HHHHHHTTCBSHHHH
T ss_pred HHHHHHcCCCcHHHH
Confidence 999999887776543
No 297
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=56.44 E-value=73 Score=25.23 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=69.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhc
Q 015811 54 NCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVI----TYNTLINGLCRT 129 (400)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 129 (400)
..+.+.|+++.+++....-++.. +.|...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 34566788888888887777765 347777777888888888888888888887766 33332 33333332
Q ss_pred CChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 015811 130 GHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC--KEGFVDKAKELFLQMKYE 186 (400)
Q Consensus 130 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 186 (400)
+..=.+....+..... +.....-...++.+.. ..|+.++|..+-..+.+.
T Consensus 78 ------E~~R~~vfaG~~~P~~-~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKV-LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEEC-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCC-CCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 2222222222211111 1112223344444443 457888888777777554
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.05 E-value=65 Score=24.26 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=18.6
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCChhhHH
Q 015811 21 LAKNKHYDTVLSLFKRLNSIGLFPDLY--TYSILINCFCKMGQVSLGF 66 (400)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~ 66 (400)
.++.|+++....+++ .|..++.. .-...+...+..|+.+-+.
T Consensus 16 A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 59 (240)
T 3eu9_A 16 ATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVK 59 (240)
T ss_dssp HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHH
Confidence 445666655544443 44333211 1112344455566655433
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.64 E-value=66 Score=24.22 Aligned_cols=17 Identities=0% Similarity=-0.126 Sum_probs=7.6
Q ss_pred HHHHHhcCChHHHHHHH
Q 015811 123 INGLCRTGHTIVALNLF 139 (400)
Q Consensus 123 ~~~~~~~~~~~~a~~~~ 139 (400)
+...+..|+.+-+..++
T Consensus 46 L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33444555554443333
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.52 E-value=58 Score=23.48 Aligned_cols=50 Identities=12% Similarity=0.306 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 015811 176 AKELFLQMKYENLNPN-VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP 225 (400)
Q Consensus 176 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 225 (400)
..++|..|...|+-.. ...|......+-..|++.+|.++|..-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3445555555443222 2334444445555555555555555555554333
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.68 E-value=43 Score=29.55 Aligned_cols=64 Identities=9% Similarity=0.070 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh------H-HHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT------Y-NTLINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
-...+|.+++.|...+.++.|..+..+.. .+.+... | .-+...+.-.+++.+|.+.+.......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 35678899999999999999999999875 1212111 1 223456667899999999999987764
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=52.15 E-value=1.2e+02 Score=26.38 Aligned_cols=113 Identities=13% Similarity=0.037 Sum_probs=69.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 015811 24 NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAAL 103 (400)
Q Consensus 24 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 103 (400)
..+.+-|.++ +.+.|++--...|..-.+.+...|++++|-++-....+ |+-.+..+.+.+-.+=..-|+..--+.+
T Consensus 342 l~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 3566666555 34456565666777778888888999988887666543 3344666666555544445666667777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 015811 104 FTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKE 141 (400)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 141 (400)
|..+.+.| ..+..----+++.-...|+.+-..+++.+
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 77777766 44443333455555556665554444443
No 303
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=51.84 E-value=1e+02 Score=25.64 Aligned_cols=64 Identities=8% Similarity=0.214 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND--WNEAKGLLIEMVDQGVQ 224 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 224 (400)
...++.-|...++.++|.+.++++....+. .......+..++-+.++ .+....++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 466777777888888888888877521111 12233334444443322 34566667666666543
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.84 E-value=1.3e+02 Score=29.15 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=67.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCC------------------
Q 015811 268 LMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIK------------------ 329 (400)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------ 329 (400)
++..+...+.++-|.++ ... ++.++..--.+..+|...|++++|...|+++-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL----~~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQL----IGW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHH----GGG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHH----Hhh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 45556666666655443 232 234444434677889999999999999987642 111
Q ss_pred -----cCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChh----hHHHHHHHhhcCC
Q 015811 330 -----PTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTC----TYRTFIDGLCVRP 381 (400)
Q Consensus 330 -----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 381 (400)
.....|..++..+-+.+-++-++++-+..++.--.-|.. .|..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 012356777888888888888888888877542222222 4666666665544
No 305
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=51.79 E-value=76 Score=24.04 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=11.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLKA 109 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~ 109 (400)
..|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345555556666555555543
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=51.34 E-value=65 Score=23.50 Aligned_cols=154 Identities=10% Similarity=0.028 Sum_probs=65.8
Q ss_pred HHHccCChhHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHH---HHHHHHHHHHhcC
Q 015811 20 CLAKNKHYDTVLSLFKRLN-SIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVV---TFTSLIKGLCAES 95 (400)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 95 (400)
..+..|+.+....++..-. ... ..+..-++ .+...+..|+.+ +++.+++.|..++.. -.+ .+...+..|
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~ 83 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVD-EVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDS-PYLYAGAQG 83 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTT-CCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHcCCCCCC-CCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHHHcC
Confidence 3445677777766654321 000 11222222 333445566654 444444445443321 122 233444566
Q ss_pred CHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCChHHHHHHHHHH-HcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811 96 RIVEAAALFTKLKAFGCEPNVIT--YNTLINGLCRTGHTIVALNLFKEM-TNGNGEIGVVFKPNTVTYSIIIDGLCKEGF 172 (400)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (400)
+.+-+..+++. .+..++... -.+.+...+..|+.+-+..+++.- .... ..+..-.+.+..+. ..++
T Consensus 84 ~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~~g~t~L~~A~-~~~~ 152 (201)
T 3hra_A 84 RTEILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-------FQNDFGYTALIEAV-GLRE 152 (201)
T ss_dssp CHHHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-------CCCTTSCCHHHHHH-HSSC
T ss_pred CHHHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-------CCCCCCCCHHHHHH-Hhcc
Confidence 66554444432 221222111 112233445567766655555543 1111 22333333333333 3333
Q ss_pred -hHHHHHHHHHHHHcCCCCC
Q 015811 173 -VDKAKELFLQMKYENLNPN 191 (400)
Q Consensus 173 -~~~a~~~~~~~~~~~~~~~ 191 (400)
...-.++++.+.+.|..++
T Consensus 153 ~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 153 GNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp CSHHHHHHHHHHHHTTCCTT
T ss_pred chhhHHHHHHHHHHCCCCCC
Confidence 3333556666666665554
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.54 E-value=56 Score=23.43 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=24.2
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc--cCCccHHHHHHHHHHHHhcC
Q 015811 39 SIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS--CFAPNVVTFTSLIKGLCAES 95 (400)
Q Consensus 39 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 95 (400)
+.|.+.+.. -..++..+...++.-.|.++++.+.+. ++..+..|.-.-+..+...|
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 344444332 233344444444555555555555544 33333333333334444433
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.18 E-value=83 Score=23.75 Aligned_cols=85 Identities=8% Similarity=0.044 Sum_probs=38.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccCCccHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHh
Q 015811 53 INCFCKMGQVSLGFVIFGRILRSCFAPNVVT--FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT--YNTLINGLCR 128 (400)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 128 (400)
+...+..|+.+....+++.+.+.+..++... -.+.+...+..|+.+ +++.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3344556777766666665555443332110 112233344455553 3344444554443221 1123333445
Q ss_pred cCChHHHHHHHHH
Q 015811 129 TGHTIVALNLFKE 141 (400)
Q Consensus 129 ~~~~~~a~~~~~~ 141 (400)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 5665555444444
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.64 E-value=92 Score=23.80 Aligned_cols=86 Identities=10% Similarity=0.162 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc-cHHHHHHHHHHHHhcCCHHHHHH
Q 015811 29 TVLSLFKRLNSI-----GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP-NVVTFTSLIKGLCAESRIVEAAA 102 (400)
Q Consensus 29 ~a~~~~~~~~~~-----g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
.-..++++..+. ...-|..-...-+. |+. ..+.+.++|..|...|+-- -...|......+-..|++.+|..
T Consensus 95 ~L~~lLErc~~~F~~~~rYknD~RyLklWl~-Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 171 (223)
T 4aez_C 95 GLVTLLERCTREFVRNPLYKDDVRYLRIWMQ-YVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADE 171 (223)
T ss_dssp CHHHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHhcccccccCCHHHHHHHHH-HHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345666666543 12334433332222 222 2367889999999887643 45678888888999999999999
Q ss_pred HHHHHHHcCCCCChh
Q 015811 103 LFTKLKAFGCEPNVI 117 (400)
Q Consensus 103 ~~~~~~~~~~~~~~~ 117 (400)
+|+.-++.+..|-..
T Consensus 172 Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 172 VYQKGKRMKAKPFLR 186 (223)
T ss_dssp HHHHHHHHTCBSHHH
T ss_pred HHHHHHHcCCccHHH
Confidence 999999887776543
No 310
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.50 E-value=94 Score=23.57 Aligned_cols=49 Identities=4% Similarity=0.050 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhCCCCCCHH-------hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811 27 YDTVLSLFKRLNSIGLFPDLY-------TYSILINCFCKMGQVSLGFVIFGRILRS 75 (400)
Q Consensus 27 ~~~a~~~~~~~~~~g~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 75 (400)
++.|+.+|+.+.+.-..++.. .-...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 467899999887653222211 1224456789999999999999999876
No 311
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.19 E-value=1.1e+02 Score=24.21 Aligned_cols=188 Identities=11% Similarity=-0.042 Sum_probs=88.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcC
Q 015811 53 INCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT--YNTLINGLCRTG 130 (400)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 130 (400)
+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKI----VKILLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 34445677776554444 44433332212234455556677554 444455565544321 112344455677
Q ss_pred ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHH
Q 015811 131 HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWN 209 (400)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 209 (400)
+.+-+.-+++.-.... ..+..-+...+...+..|+.+-+. .+.+.|..+ +...-.+.+...+..|+.+
T Consensus 107 ~~~~v~~Ll~~ga~~~-------~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 107 NMQTVKLFVKKNWRLM-------FYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVD 175 (285)
T ss_dssp CHHHHHHHHHHCGGGG-------GCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHhcCCCCC-------ccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHH
Confidence 7766655555421111 122222234455556667765444 334444332 2213344455556778887
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHH
Q 015811 210 EAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFT 264 (400)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 264 (400)
-+..+++.-..... .+..-.+..+...+..|+. ++.+.+.+.|..++...
T Consensus 176 ~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 176 MMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 77666655433221 1222222222333445553 44555566666655443
No 312
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=45.60 E-value=48 Score=23.00 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=22.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG 60 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 60 (400)
++..+...+..-.|.++++.+.+.+...+..|-...+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44444444445555555555555544444444444445555544
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.41 E-value=1e+02 Score=23.60 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc
Q 015811 279 NRVKELFVSMESMGCKH-DDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP 330 (400)
Q Consensus 279 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 330 (400)
+...++|..|...|+-. -...|......+...|++.+|..+|+.-++.+..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45667777777665432 35567777777777888888888888877776666
No 314
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=45.36 E-value=42 Score=19.67 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR 128 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (400)
++.++..++...-.++++..+++..+.| ..+..+|..-.+.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3444455555555555555555555555 3444444444444433
No 315
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=44.65 E-value=93 Score=23.02 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=34.8
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015811 44 PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLI 123 (400)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 123 (400)
++...-...+..+.+.+..+ +...+..+... ++..+-...+.++...++.+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 45555555555566555533 23333333332 24444444455555555422 2222222221 33444444445
Q ss_pred HHHHhcCC
Q 015811 124 NGLCRTGH 131 (400)
Q Consensus 124 ~~~~~~~~ 131 (400)
.++.+.++
T Consensus 103 ~aL~~~~~ 110 (211)
T 3ltm_A 103 VALGQIGD 110 (211)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 55555554
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.81 E-value=82 Score=22.15 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 015811 196 TSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK 242 (400)
Q Consensus 196 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (400)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34444444444555566666666555444444444444555555543
No 317
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=43.30 E-value=54 Score=22.40 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG 60 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 60 (400)
++..+...+..-.|.++++.+.+.+...+..|-...+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444455556666666555544444545444455555544
No 318
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.27 E-value=2e+02 Score=26.46 Aligned_cols=44 Identities=7% Similarity=0.082 Sum_probs=26.6
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 015811 12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFC 57 (400)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 57 (400)
..| .+|-.|.+.|++++|.++.++.... +.--...|...+..++
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 466 5777899999999999998776432 1111134444555554
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.14 E-value=90 Score=22.11 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=39.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--hhhHHHHHHHHHhccCCc
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ--VSLGFVIFGRILRSCFAP 79 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 79 (400)
..+.++.-|...|+.++|...++++..-. .....+...+..++-+.++ .+.+..++..+...++-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45678888889999999999999885211 1112233334444443322 345666777776655443
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.69 E-value=59 Score=23.30 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcccHHHHHHHHHhcCC
Q 015811 196 TSLIHGFCHANDWNEAKGLLIEMVDQ--GVQPNVVSSNVIMNELCKNGK 242 (400)
Q Consensus 196 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 242 (400)
..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33444444444455555555555544 333344444444444444443
No 321
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.61 E-value=88 Score=21.84 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=24.2
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811 37 LNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES 95 (400)
Q Consensus 37 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (400)
+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344454444321 22233333334 4455556655555444434443333333333333
No 322
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=41.00 E-value=70 Score=20.56 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh-----hhCCCCcCHHHHHHH
Q 015811 280 RVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNEL-----PFKGIKPTVVTYNTL 338 (400)
Q Consensus 280 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~~~~p~~~~~~~l 338 (400)
.+..+.++....|+.|+......++..|...+- + +..+.++. ...|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 455666666666777777666666666655443 1 22222221 123556666655543
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.50 E-value=1e+02 Score=22.17 Aligned_cols=60 Identities=8% Similarity=0.052 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 015811 160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNP--NVVTYTSLIH-G-----FCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 220 (400)
|...+..+ ..|++-+|.++++..-.....+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33334333 3488888888888876654344 4455666666 2 2456888888888887765
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.46 E-value=94 Score=21.85 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=11.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcc
Q 015811 53 INCFCKMGQVSLGFVIFGRILRSC 76 (400)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~~~~~~ 76 (400)
+..+...+..-.|.++++.+.+.+
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~ 56 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKD 56 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhC
Confidence 333334444444555555554443
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.66 E-value=70 Score=21.99 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=39.1
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH
Q 015811 36 RLNSIGLFPDLYTYSILINCFCKMG-QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI 97 (400)
Q Consensus 36 ~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (400)
.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355677665543 234455555555 6777888888888776666666666667777776654
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.41 E-value=91 Score=21.40 Aligned_cols=61 Identities=11% Similarity=0.194 Sum_probs=40.2
Q ss_pred HHhccCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 015811 72 ILRSCFAPNVVTFTSLIKGLCAES-RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI 133 (400)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (400)
+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 44566664443 334555665555 56678889999888776667777777777787777544
No 327
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=39.39 E-value=22 Score=20.32 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 015811 28 DTVLSLFKRLNSIGLFPDLYTYSILINCF 56 (400)
Q Consensus 28 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 56 (400)
++|.+.|-+|++..-.++..+|...+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45566666655433233445566555555
No 328
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.37 E-value=1.9e+02 Score=25.02 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=34.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC-----chhHHHHHHHHHhCCCC
Q 015811 204 HANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK-----MDNASRLLDLMVQCDVR 259 (400)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 259 (400)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++.....|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 446788888888888887766555444555555544443 23455566666666643
No 329
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.09 E-value=96 Score=21.59 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=26.0
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811 37 LNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES 95 (400)
Q Consensus 37 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (400)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 44455444432 22333344444445556666666655544334444333344443333
No 330
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=38.45 E-value=1.1e+02 Score=22.26 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=44.9
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--cc---------------HHHH
Q 015811 22 AKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PN---------------VVTF 84 (400)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~---------------~~~~ 84 (400)
.-+|.+..++-++.... ..+..-|.. -++-+..++..|+..++.++...+. || ...+
T Consensus 44 yyngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy 117 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE 117 (242)
T ss_dssp HHTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred hhcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence 34677777766544321 112222222 2567788999999999999865433 22 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 015811 85 TSLIKGLCAESRIVEAAALFTKL 107 (400)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~ 107 (400)
+.+...+...|+.++|+..+..-
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhhhHhhhh
Confidence 44445555556666665555443
No 331
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=38.39 E-value=1.6e+02 Score=24.23 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC-HHHHH--HHHHH----HHhcCCHHHHHHHHh
Q 015811 249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD-DFSYN--ILING----YCKNKEVEEALSLYN 321 (400)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--~l~~~----~~~~~~~~~A~~~~~ 321 (400)
++..+.+.++.|...++..++..+.+.=.++.+..+|+.+...|.... ...+- +++.. .....++++...+++
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~ 310 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQ 310 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 444555566666666777777777766677777777777776653322 11111 11211 123466666666666
Q ss_pred hhhh
Q 015811 322 ELPF 325 (400)
Q Consensus 322 ~~~~ 325 (400)
.+..
T Consensus 311 ~~p~ 314 (345)
T 2qfz_A 311 NLPT 314 (345)
T ss_dssp SCSC
T ss_pred cCCC
Confidence 5543
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.02 E-value=91 Score=21.91 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=22.7
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCc
Q 015811 198 LIHGFCHAN-DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKM 243 (400)
Q Consensus 198 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (400)
++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344444443 4455566666665554444444444445555555443
No 333
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=37.64 E-value=1.1e+02 Score=21.96 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHhhhhh
Q 015811 264 TYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE--VEEALSLYNELPF 325 (400)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~ 325 (400)
....++.-|...++.++|...++++.... ........++......++ -+.+..++..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34667888888899999999998876322 112223334443334443 2345566666643
No 334
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.25 E-value=1.2e+02 Score=22.31 Aligned_cols=148 Identities=10% Similarity=0.009 Sum_probs=80.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
...+..+.+.+.. .+...+..+.. .++...-...+.++...++.+ +...+..+.. .++..+-...+.++.+.
T Consensus 37 ~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 37 RAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQI 108 (211)
T ss_dssp HHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 3344444444442 23333333333 346666666677777777644 3344444443 34666666777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH
Q 015811 95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD 174 (400)
Q Consensus 95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (400)
++.+ +...+..+.. .++..+-...+.++...+..+ +...+..+.. .++..+-...+.++.+.+. .
T Consensus 109 ~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---------d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 109 GDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---------DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp CCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---------CSSHHHHHHHHHHHHHHCS-H
T ss_pred CcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---------CCCHHHHHHHHHHHHHhCc-h
Confidence 7643 3344444442 456666666777777777643 4444444443 2455555666666666665 3
Q ss_pred HHHHHHHHHHH
Q 015811 175 KAKELFLQMKY 185 (400)
Q Consensus 175 ~a~~~~~~~~~ 185 (400)
.+...+..+.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 44445555544
No 335
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.08 E-value=1.4e+02 Score=22.86 Aligned_cols=118 Identities=9% Similarity=-0.101 Sum_probs=63.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHhc---CChhhHHHHHHHHHhccCCc-------
Q 015811 17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDL-------YTYSILINCFCKM---GQVSLGFVIFGRILRSCFAP------- 79 (400)
Q Consensus 17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~------- 79 (400)
.+...++.|+.+....+++.+.+.|..++. .-.+.+ ...+.. |+.+-+..+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 445566789999888888887777655443 223333 334445 77777777776544432110
Q ss_pred ---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---------------HHHHHHHHHhcCChHHHHHHHH
Q 015811 80 ---NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT---------------YNTLINGLCRTGHTIVALNLFK 140 (400)
Q Consensus 80 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~ 140 (400)
+..-.+ .+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 84 ~~~d~~g~t-~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 84 TDEFYQGHS-ALHIAIEKRSLQCV----KLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CSTTTTTCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCCC-HHHHHHHcCCHHHH----HHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 112223 33444566766544 44455565544332 2234445556777665555544
No 336
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.03 E-value=82 Score=21.46 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=21.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015811 88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH 131 (400)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 131 (400)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33333444444555555555555444444454455555555543
No 337
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.70 E-value=1.8e+02 Score=23.97 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 015811 84 FTSLIKGLCAESRIVEAAALFTKL 107 (400)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~ 107 (400)
...++.-|...|+.++|.+.++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 345566666666766666666655
No 338
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=36.61 E-value=93 Score=24.23 Aligned_cols=126 Identities=10% Similarity=0.021 Sum_probs=63.9
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-------CHHhHHHHHHHHH--hcCChhhHHHHHHHHHhcc---
Q 015811 9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFP-------DLYTYSILINCFC--KMGQVSLGFVIFGRILRSC--- 76 (400)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~--- 76 (400)
++..-.+.|. ..++.|+.+.+..+++.....+... +..-++.|..++. +.|+.+-+..+++.-...+
T Consensus 9 ~d~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 9 PRLYDRRSIF-DAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp --CCCHHHHH-HHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCcccchHHH-HHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 3444444444 4556899999988888877655332 2233444444443 2477776666666543211
Q ss_pred ------CC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh----------------HHHHHHHHHhcCChH
Q 015811 77 ------FA-PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT----------------YNTLINGLCRTGHTI 133 (400)
Q Consensus 77 ------~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~ 133 (400)
.. .+..-.+. +...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+
T Consensus 88 ~~i~~~~~~~d~~g~tp-L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTA-LHIAIERRNMTLV----TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162 (273)
T ss_dssp HHHTCCCCSTTTTTCCH-HHHHHHTTCHHHH----HHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred HHhhcccccccCCCCCH-HHHHHHcCCHHHH----HHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 11 11222233 3334456766544 44445565544332 223444555667766
Q ss_pred HHHHHHH
Q 015811 134 VALNLFK 140 (400)
Q Consensus 134 ~a~~~~~ 140 (400)
-+.-+++
T Consensus 163 ~v~~Ll~ 169 (273)
T 2pnn_A 163 IVKFLLQ 169 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5554444
No 339
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=36.48 E-value=70 Score=19.82 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHh-hCCCCCChhhHHHHHHHhhcCC
Q 015811 348 AERALKLFVEMQ-GNDVAADTCTYRTFIDGLCVRP 381 (400)
Q Consensus 348 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g 381 (400)
.++|...|.+|+ +.++.|+. +|...+...+.-.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~Dp 49 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIVFDP 49 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCC
Confidence 345555555554 33444333 4555544444433
No 340
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.45 E-value=2.1e+02 Score=24.72 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHc--------CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811 173 VDKAKELFLQMKYE--------NLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ 221 (400)
Q Consensus 173 ~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (400)
.++...++...... ++..+......++.. ..|+...+..+++.+...
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 34455555555442 222344555555554 457888888888776654
No 341
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.33 E-value=64 Score=21.71 Aligned_cols=20 Identities=10% Similarity=-0.227 Sum_probs=10.9
Q ss_pred HHHhcCChhhHHHHHHHHHh
Q 015811 55 CFCKMGQVSLGFVIFGRILR 74 (400)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~ 74 (400)
.+...++++.|.+++..+..
T Consensus 70 ~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 70 QELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33455566666666555544
No 342
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.54 E-value=1e+02 Score=20.96 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=38.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--hhhHHHHHHHHHhccCCc
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ--VSLGFVIFGRILRSCFAP 79 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 79 (400)
..+.++.-|...|+.++|...++++..-. .....+...+..++-+.++ .+....++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34677888888999999999998875211 1112233333344443332 345666777776655443
No 343
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=35.52 E-value=88 Score=20.12 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 015811 27 YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG 60 (400)
Q Consensus 27 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 60 (400)
.-.|.++.+++...|+.|+..+...++..|..-+
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3456666777777777777777777777776655
No 344
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=35.50 E-value=67 Score=19.59 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=21.1
Q ss_pred CCCCCCcchHHHHHHHHHccCChhHHHHHHHHH
Q 015811 5 HPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRL 37 (400)
Q Consensus 5 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 37 (400)
.+.||++.+|+-+...+-+..-..+++.+.+++
T Consensus 30 PnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 30 PNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 445777777777776666555555666655554
No 345
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=35.11 E-value=1.3e+02 Score=21.95 Aligned_cols=171 Identities=10% Similarity=0.023 Sum_probs=85.7
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015811 44 PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLI 123 (400)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 123 (400)
++...-...+.++...+..+....+. .+.. .++...-...+.++...++.+ +...+..+.. .++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 44444444555555555433322222 3332 234444455555565556543 2333333332 35666666666
Q ss_pred HHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 015811 124 NGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFC 203 (400)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (400)
.++.+.++.+. ...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++...-...+.++.
T Consensus 98 ~aL~~~~~~~~-~~~L~~~l~---------d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 98 VALGQIGDERA-VEPLIKALK---------DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp HHHHHHCCGGG-HHHHHHHTT---------CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred HHHHHhCcHHH-HHHHHHHHc---------CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 67777666543 333333332 345555566666666666643 3334444443 246666666677777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 015811 204 HANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN 240 (400)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (400)
+.+.. ++...+..+... ++...-...+.++.+.
T Consensus 164 ~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 164 EIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred HhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 76653 455555555543 2444444444444443
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.90 E-value=79 Score=22.22 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=39.5
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH
Q 015811 35 KRLNSIGLFPDLYTYSILINCFCKMG-QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI 97 (400)
Q Consensus 35 ~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (400)
+.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.++..+..|....+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34566776665432 33444555555 5667888888888776666666666667777777654
No 347
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=34.61 E-value=1.1e+02 Score=21.11 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=4.8
Q ss_pred hcCCHHHHHHHH
Q 015811 93 AESRIVEAAALF 104 (400)
Q Consensus 93 ~~~~~~~a~~~~ 104 (400)
..|+.+.+..++
T Consensus 11 ~~g~~~~v~~ll 22 (156)
T 1bd8_A 11 ARGDVQEVRRLL 22 (156)
T ss_dssp HHTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 334444433333
No 348
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.39 E-value=80 Score=21.85 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH 131 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 131 (400)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444444555555555555444444444445555555543
No 349
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.10 E-value=1.3e+02 Score=21.37 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCC
Q 015811 279 NRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIK 329 (400)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 329 (400)
+.+..++..+.+.|.-.|...-...+......| -....+-.++..+|+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 344455555555554433333334444443322 1233444555555553
No 350
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.52 E-value=85 Score=19.00 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=23.8
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811 37 LNSIGLFPDLYTYSILINCFCKMG-QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE 94 (400)
Q Consensus 37 ~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (400)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 344454444332 23333333332 3444555555555443333344433344444333
No 351
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.42 E-value=82 Score=21.99 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=35.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 015811 15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVS 63 (400)
Q Consensus 15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 63 (400)
..++..+...+ .-.|.++++.+.+.+...+..|-..-+..+...|-+.
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 44566666666 7789999999988776667777777777777777443
No 352
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.42 E-value=63 Score=24.96 Aligned_cols=87 Identities=13% Similarity=-0.088 Sum_probs=47.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccCCccHH-------HHHHHHHHHH--hcCCHHHHHHHHHHHHHcC---------CC-
Q 015811 53 INCFCKMGQVSLGFVIFGRILRSCFAPNVV-------TFTSLIKGLC--AESRIVEAAALFTKLKAFG---------CE- 113 (400)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~- 113 (400)
+...++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 445567899998888888777766544422 2233443332 5677776666666543311 01
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHH
Q 015811 114 PNVITYNTLINGLCRTGHTIVALNLFK 140 (400)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~a~~~~~ 140 (400)
.+..-. +.+...+..|+.+-+.-+++
T Consensus 89 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~ 114 (260)
T 3jxi_A 89 VYYRGQ-TALHIAIERRCKHYVELLVE 114 (260)
T ss_dssp SSEESB-CHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCC-CHHHHHHHcCCHHHHHHHHh
Confidence 011112 23444556787765555554
No 353
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.78 E-value=1.5e+02 Score=21.66 Aligned_cols=28 Identities=21% Similarity=0.062 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811 262 AFTYNTLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 262 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
...++.+...+...|+.++|...+..--
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 3456667778888899999988887543
No 354
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.83 E-value=1.8e+02 Score=21.63 Aligned_cols=181 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH--HHHHHHH
Q 015811 15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT--SLIKGLC 92 (400)
Q Consensus 15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 92 (400)
+..+...++.|+.+....+++.-...-..++..-.+.+..++.... .++++.+.+.|..++..... +.+...+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811 93 AESRIVEAAALFTKLKAFGCEPNVITYN--TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE 170 (400)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (400)
..|+.+ +++.+.+.|..++..... +.+...+..|+.+-+..+++.-.... ..+....+.+..+....
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~~ 150 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-------AKDHYDATAMHRAAAKG 150 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHHHHHT
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-------CcCCCCCcHHHHHHHcC
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHH--HHHHHHHhcCCHHHHHHHHH
Q 015811 171 GFVDKAKELFLQMKYENLNPNVVTYT--SLIHGFCHANDWNEAKGLLI 216 (400)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~ 216 (400)
. .++++.+.+.|..++..... +.+...+..|+.+-+..+++
T Consensus 151 ~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 151 N-----LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp C-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred C-----HHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.63 E-value=4.2e+02 Score=25.77 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=33.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 015811 87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMT 143 (400)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 143 (400)
++..+...|..+-|.++... ++.++..-..+..+|...|++++|...|+++-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44455555665554433222 24454444567788999999999999998865
No 356
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.62 E-value=1.2e+02 Score=24.91 Aligned_cols=26 Identities=0% Similarity=0.156 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811 264 TYNTLMDGFCLTGKINRVKELFVSME 289 (400)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (400)
....++.-|...|+.++|...++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35667788888899999888887775
No 357
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=28.11 E-value=45 Score=21.47 Aligned_cols=30 Identities=7% Similarity=-0.017 Sum_probs=19.6
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811 45 DLYTYSILINCFCKMGQVSLGFVIFGRILR 74 (400)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 74 (400)
|...+...+.-+...++.+++..+++.+..
T Consensus 32 DV~~l~~yL~~lv~~~~lek~~~vlk~l~r 61 (97)
T 4fjo_A 32 DILQVVRYCTDLIEEKDLEKLDLVIKYMKR 61 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 345566666666777888888777655543
No 358
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.76 E-value=4.2e+02 Score=25.56 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHCC----CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHH
Q 015811 196 TSLIHGFCHAND---WNEAKGLLIEMVDQG----VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTL 268 (400)
Q Consensus 196 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (400)
..++...+..|+ .+.|.+.|+.....+ ++|+. -..+...-.+.|..++-..+++...+.. +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345666677776 456777777766542 34443 3444444556777776667777776643 34445667
Q ss_pred HHHHHcCCChHHHHHHHHHHHhc
Q 015811 269 MDGFCLTGKINRVKELFVSMESM 291 (400)
Q Consensus 269 ~~~~~~~~~~~~a~~~~~~~~~~ 291 (400)
+.+++...+.....++++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCC
Confidence 88888888888888888777653
No 359
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.59 E-value=85 Score=22.61 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=21.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 015811 13 SFNILLGCLAKNKHYDTVLSLFKRLN 38 (400)
Q Consensus 13 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 38 (400)
....++.-|...++.++|...++++.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34567888888999999999998876
No 360
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.46 E-value=1.2e+02 Score=20.38 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=22.3
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811 179 LFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVD 220 (400)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (400)
+|+.+....+.|+...-..-+..+...++++.|..+...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444544433333333444566777777777766654
No 361
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.97 E-value=1.3e+02 Score=19.24 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHh
Q 015811 346 RQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYA 388 (400)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 388 (400)
...+.|.+++..+...|. ..|..++.++...|...-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHHH
Confidence 355666666666655442 256666666655555554433
No 362
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.74 E-value=85 Score=21.62 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=8.3
Q ss_pred HHhcCChhhHHHHHHH
Q 015811 56 FCKMGQVSLGFVIFGR 71 (400)
Q Consensus 56 ~~~~~~~~~a~~~~~~ 71 (400)
.+..|+.+....+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3445555555555544
No 363
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=26.31 E-value=5.2e+02 Score=26.30 Aligned_cols=34 Identities=0% Similarity=-0.003 Sum_probs=17.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 015811 204 HANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK 239 (400)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (400)
..+++..|++++.++.+. +++...|..++..+..
T Consensus 1296 ~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~ 1329 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGA 1329 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 445556666665555554 2344455555544433
No 364
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=26.09 E-value=41 Score=17.07 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=9.2
Q ss_pred HHHHhhcCCcchhhHhhhhC
Q 015811 373 FIDGLCVRPQVRFTYARRKG 392 (400)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~ 392 (400)
-|.+.|..|+++.+..+...
T Consensus 16 qiyvA~seGd~etv~~Le~Q 35 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKAK 35 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 34444455555544444433
No 365
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.08 E-value=1.3e+02 Score=18.94 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhh
Q 015811 345 IRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYAR 389 (400)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 389 (400)
....++|.++++.+...| ...|..++.++...|...-|..+
T Consensus 49 ~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHHHHHH
Confidence 345566666666555433 33556666666655544444433
No 366
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.33 E-value=80 Score=18.01 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=5.5
Q ss_pred CChHHHHHHHHHH
Q 015811 276 GKINRVKELFVSM 288 (400)
Q Consensus 276 ~~~~~a~~~~~~~ 288 (400)
|+.+.|...+-.|
T Consensus 37 gdvd~aI~~LL~m 49 (59)
T 1wgl_A 37 GNKDAAINSLLQM 49 (59)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 4444444444443
No 367
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=24.92 E-value=2e+02 Score=20.89 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 015811 243 MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCK 294 (400)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 294 (400)
.+....++..+.+.|.--|...-...+....+.|.+ ....+-.++.+.|+.
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 344556667777776555544444555554443322 234455566666654
No 368
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.54 E-value=87 Score=21.15 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811 49 YSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA 102 (400)
Q Consensus 49 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 102 (400)
|.-.|...+.+++.+-|.++++..++.| +...|.+.+..|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3444555566677777777777766654 55666666666666555555544
No 369
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.13 E-value=2e+02 Score=20.61 Aligned_cols=50 Identities=8% Similarity=-0.043 Sum_probs=27.9
Q ss_pred CChhhHHHHHHHHHhccCCc--cHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 015811 60 GQVSLGFVIFGRILRSCFAP--NVVTFTSLIK-G-----LCAESRIVEAAALFTKLKA 109 (400)
Q Consensus 60 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 109 (400)
|++-+|-++++.+=.....+ ....|..||+ + ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665543333 3445555555 2 2245666666666666544
No 370
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.84 E-value=1.1e+02 Score=22.24 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 015811 79 PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI 133 (400)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (400)
|....++.++..++...-.+.++-.+.+....| ..+..+|..-++.+++..-+.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~ 162 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLV 162 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999998 568888877777776654433
No 371
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.81 E-value=2.9e+02 Score=22.50 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=9.3
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 015811 91 LCAESRIVEAAALFTKLKA 109 (400)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~ 109 (400)
.+..|+.+-+..+++....
T Consensus 91 A~~~g~~~~v~~Ll~~~~~ 109 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKE 109 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhccc
Confidence 3445555555555554333
No 372
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.73 E-value=3.2e+02 Score=22.80 Aligned_cols=209 Identities=8% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCCh--hhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811 15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYSILINCFCKMGQV--SLGFVIFGRILRSCFAPNVVTFTSLIK 89 (400)
Q Consensus 15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~ 89 (400)
..++.-|...|+.++|...++++. .|+ ......++......++. +.+-.++..+...++-+.......+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_pred HHHhcCCHH----HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811 90 GLCAESRIV----EAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID 165 (400)
Q Consensus 90 ~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (400)
.+....+.. .|..++..+...-+.-+......+...+...+...-...++..+.+.. .-..+..
T Consensus 92 lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~------------G~~~l~~ 159 (364)
T 3l6a_A 92 VLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQ------------DREWLTE 159 (364)
T ss_dssp HHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHS------------CHHHHHH
T ss_pred HHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhc------------CHHHHHH
Q ss_pred HHHhcC------------ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 015811 166 GLCKEG------------FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVI 233 (400)
Q Consensus 166 ~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 233 (400)
.+.+.| ..+...+.++.---..+.|-...-..|..........++..+.++.-......++....+.+
T Consensus 160 l~~~sgl~l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L 239 (364)
T 3l6a_A 160 LFQQSKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNIL 239 (364)
T ss_dssp HHHHHTCCSGGGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHH
T ss_pred HHHHcCCCHHHhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHH
Q ss_pred HHHHHh
Q 015811 234 MNELCK 239 (400)
Q Consensus 234 ~~~~~~ 239 (400)
+.+.++
T Consensus 240 ~t~v~~ 245 (364)
T 3l6a_A 240 MTSFLQ 245 (364)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 373
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.66 E-value=2.4e+02 Score=20.96 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=11.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 015811 202 FCHANDWNEAKGLLIEMVDQG 222 (400)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~~ 222 (400)
.+..|+.+-+..+++.+.+.|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC
Confidence 344555555555555555554
No 374
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.29 E-value=86 Score=21.19 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChH
Q 015811 231 NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKIN 279 (400)
Q Consensus 231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 279 (400)
.-.|...+..++.+-|.++++-..+.| +...|.+.+..|...=+++
T Consensus 36 kDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpD 81 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPD 81 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChH
Confidence 333444444444444444444444433 3333444444444333333
No 375
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=21.91 E-value=1.2e+02 Score=22.51 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811 277 KINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF 325 (400)
Q Consensus 277 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 325 (400)
+......+.+.+... ..+-...-.++.++.+.|++++|..++.++..
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555443 22333344677888888999999888888765
No 376
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.88 E-value=2e+02 Score=19.87 Aligned_cols=19 Identities=5% Similarity=-0.109 Sum_probs=8.4
Q ss_pred hcCCchhHHHHHHHHHhCC
Q 015811 239 KNGKMDNASRLLDLMVQCD 257 (400)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~ 257 (400)
..+..-.|.++++.+.+.+
T Consensus 33 ~~~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKF 51 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGC
T ss_pred hCCCCCCHHHHHHHHHHhC
Confidence 3333444444444444443
No 377
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.76 E-value=1.3e+02 Score=22.45 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=11.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 015811 89 KGLCAESRIVEAAALFTKLK 108 (400)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~ 108 (400)
..|.+.|.+++|.++|++..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHccchHHHHHHHHHHh
Confidence 34556666666666666544
No 378
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.08 E-value=1.1e+02 Score=22.29 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=30.2
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH
Q 015811 44 PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI 97 (400)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (400)
|....++.++.+++...-.+.++-.+.+....|. .+...|..-.+.+++..-+
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 4444456666666666666666666666666653 3555555555555554433
No 379
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.88 E-value=2.1e+02 Score=21.41 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=19.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCC
Q 015811 122 LINGLCRTGHTIVALNLFKEMTNGN 146 (400)
Q Consensus 122 l~~~~~~~~~~~~a~~~~~~~~~~~ 146 (400)
.+..|.+.|.+++|.++|++.....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHccchHHHHHHHHHHhcCC
Confidence 4557899999999999999976654
Done!