BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015812
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/398 (33%), Positives = 215/398 (54%), Gaps = 27/398 (6%)
Query: 7 DKLFPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVNTRSVDKXXXXXXXX 66
++ +P +S D + C +++P +KGKI+VC + +
Sbjct: 246 NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEA--SFGPHEFFKSLDGA 303
Query: 67 XXXIVLVNLPEYGNDRMTDPHVLPASDINFNDSVSLFSYITSIKHPVGYITRPTTEFGTK 126
++ N +Y D + LP+S ++ ND ++ YI SI+ P I + TT
Sbjct: 304 AGVLMTSNTRDY-----ADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS 358
Query: 127 PAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGT 186
AP + +FSS+GPN T +++KPDI+ PG I+AA+ + +R + FN +SGT
Sbjct: 359 -APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGI---RRNTLFNIISGT 414
Query: 187 SMSCPHISGIASLLKILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAG 246
SMSCPHI+GIA+ +K +P WSPAAI+SA+MTTAS +NA F F+YG+G
Sbjct: 415 SMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASP--------MNARFNPQAEFAYGSG 466
Query: 247 HVQPNLAMDPGLVYDLTANDYLNFLCTLGYNKKEIFWFSKNYTYTCPNHTISLVDFNYPS 306
HV P A+ PGLVYD +DY+ FLC GYN + + + +Y+ +T + D NYPS
Sbjct: 467 HVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPS 526
Query: 307 ISV---PKLSGSITVTRKVKNVG-SPGTYQALLKSPKGVSVTIAPKSLKFINVGEEKSFK 362
+ P + + R + +V TY+A++ +P+G+++++ P L F +G+ KSF
Sbjct: 527 FGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFT 586
Query: 363 VIIKAQNASVTKDYAFGELIWSDDKHHQVRSPIVVKAV 400
+ ++ S+ L+WSD H+ VRSPI + ++
Sbjct: 587 LTVR---GSIKGFVVSASLVWSDGVHY-VRSPITITSL 620
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 189/327 (57%), Gaps = 25/327 (7%)
Query: 90 PASDINFNDSVSLFSYITSIKHPVGYITRPTTEFGTKPAPFMAAFSSKGPNIITPEILKP 149
P +N + + +Y+ + P IT T TKPAP +AA S++GP+ I KP
Sbjct: 328 PGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKP 387
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSP-FNSVSGTSMSCPHISGIASLLKILHPDWS 208
DI APG I+AAY T + + S + SGTSM+ PH +GIA++LK HP+WS
Sbjct: 388 DILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWS 447
Query: 209 PAAIQSAIMTTASTHDNNKQQILNASFAE-ATPFSYGAGHVQPNLAMDPGLVYDLTANDY 267
P+AI+SA+MTTA DN ++ I ++ + ATP GAGHV PN A+DPGLVYD T DY
Sbjct: 448 PSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDY 507
Query: 268 LNFLCTLGYNKKEIFWFSK-NYTYTCPNHTISLVDFNYPS-ISVPKLSGSITV-----TR 320
+N LC+L + +++ ++ + ++ C N + D NYPS I++ + G+ T+ R
Sbjct: 508 VNLLCSLNFTEEQFKTIARSSASHNCSNPS---ADLNYPSFIALYSIEGNFTLLEQKFKR 564
Query: 321 KVKNVG-SPGTYQALLKSPKGVSVTIAPKSLKFINVGEEKSFKVIIK-----AQNASVTK 374
V NVG TY+A LK+PK +++++P+ L F N E++S+ + I+ Q+ +V
Sbjct: 565 TVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNV-- 622
Query: 375 DYAFGELIWSD-DKHHQVRSPIVVKAV 400
G + W + + +H VRSPIV +
Sbjct: 623 ----GSITWVEQNGNHSVRSPIVTSPI 645
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 134 FSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHI 193
FSS+GP LKP++ APG IIAA S D + + GT+M+ PH+
Sbjct: 312 FSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMATPHV 365
Query: 194 SGIASLLKILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHV 248
+GIA+LL HP W+P +++A++ TA + E +YGAG V
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIETADIVKPD----------EIADIAYGAGRV 410
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 13/76 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG N+ + Y S + S++GTSM+ PH++G+A+L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 210 AAIQSAIMTTASTHDN 225
I++ + TA+ N
Sbjct: 238 VQIRNHLKNTATGLGN 253
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 11/72 (15%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG +I +++ + S T N++SGTSM+ PH++G+A+L +P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 210 AAIQSAIMTTAS 221
A + + + T A+
Sbjct: 247 AQVTNLLKTRAT 258
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A FSS GP + D+ APG +I + + + ++SGTSM+ P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTLPGGK-------------YGALSGTSMASP 216
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ HP+W+ ++S++ TA+
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTAT 246
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 13/73 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG N+ + Y S + S++GTSM+ PH++G A+L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 210 AAIQSAIMTTAST 222
I++ + TA++
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 13/73 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG N+ + Y S + S++GTSM+ PH++G A+L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 210 AAIQSAIMTTAST 222
I++ + TA++
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 13/73 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG N+ + Y S + S++GTSM+ PH++G A+L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 210 AAIQSAIMTTAST 222
I++ + TA++
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 13/73 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG N+ + Y S + S++GTSM+ PH++G A+L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 210 AAIQSAIMTTAST 222
I++ + TA++
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 13/73 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG N+ + Y S + S++GTSM+ PH++G A+L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 210 AAIQSAIMTTAST 222
I++ + TA++
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A FSS GP + D+ APG +I + + + ++SGT+M+ P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTLPGGK-------------YGALSGTAMASP 216
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ HP+W+ ++S++ TA+
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTAT 246
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 11/73 (15%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
D+ APG +I +A+ + + T +++GTSM+ PH++G+A+L +P +P
Sbjct: 196 DLFAPGASIPSAWYTSDTATQ-----------TLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 210 AAIQSAIMTTAST 222
A++ SAI+ A+T
Sbjct: 245 ASVASAILNGATT 257
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 13/73 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG N+ + Y S + S++GT M+ PH++G A+L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 210 AAIQSAIMTTAST 222
I++ + TA++
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 13/73 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG N+ + Y S + S++GT M+ PH++G A+L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 210 AAIQSAIMTTAST 222
I++ + TA++
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 13/73 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG N+ + Y S + S++GT M+ PH++G A+L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 210 AAIQSAIMTTAST 222
I++ + TA++
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 13/73 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI APG N+ + Y S + S++GT M+ PH++G A+L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 210 AAIQSAIMTTAST 222
I++ + TA++
Sbjct: 238 VQIRNHLKNTATS 250
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I++ L +K + + SGT+M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVST---------LPGNK----YGAKSGTAMASP 216
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I++ L +K + + SGT+M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVST---------LPGNK----YGAKSGTAMASP 216
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I + L +K + + SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXST---------LPGNK----YGAYSGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I + L +K + + SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXST---------LPGNK----YGAYSGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAKSGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAYNGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 21/94 (22%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I + L +K + + SGTSM+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICST---------LPGNK----YGAKSGTSMASP 216
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTASTHDN 225
H++G A+L+ HP+W+ ++S++ T + N
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGN 250
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAYNGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I + L +K + + SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICST---------LPGNK----YGAKSGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I + L +K + + SGTSM+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICST---------LPGNK----YGAKSGTSMASP 216
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I + L +K + + SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICST---------LPGNK----YGAKSGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 31/132 (23%)
Query: 131 MAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSC 190
++ FSS G + +KPDI APG++I+++ + + +SGTSMS
Sbjct: 375 LSRFSSWG--LTADGNIKPDIAAPGQDILSSVA-------------NNKYAKLSGTSMSA 419
Query: 191 PHISGIASLLK----ILHPDWSPAA----IQSAIMTTAST-HDNNKQQILNASFAEATPF 241
P ++GI LL+ +PD +P+ + +M++A+ +D +++ +P
Sbjct: 420 PLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYF-------SPR 472
Query: 242 SYGAGHVQPNLA 253
GAG V A
Sbjct: 473 QQGAGAVDAKKA 484
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAYNGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAYNGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAYNGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAYSGTXMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAYSGTXMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAKSGTXMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I + L +K + + SGT M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICST---------LPGNK----YGAKSGTXMASP 216
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I + L +K + + SGT M+ P
Sbjct: 175 ASFSSVGPEL--------DVMAPGVSIWST---------LPGNK----YGAKSGTXMASP 213
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENT 241
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + +GT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAYNGTXMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + +GT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAYNGTXMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS G + ++ APG + + Y PT+ + +++GTSM+ P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ HP+ S + +++ + +TA+
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTAT 255
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS G + ++ APG + + Y PT+ + +++GTSM+ P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ HP+ S + +++ + +TA+
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTAT 255
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS G + ++ APG + + Y PT+ + +++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ HP+ S + +++ + +TA+
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS G + ++ APG + + Y PT+ + +++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ HP+ S + +++ + +TA+
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS G + ++ APG + + Y PT+ + +++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ HP+ S + +++ + +TA+
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS G + ++ APG + + Y PT+ + +++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ HP+ S + +++ + +TA+
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 185 GTSMSCPHISGIASLLKILHPDWSPAAIQSAIMTTA 220
GTSM+ PH+SG+A+L+ HP+ S + +++A+ TA
Sbjct: 367 GTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS G + D+ APG +I ++ P + + +GTSM+ P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSI-----QSTLP--------GGTYGAYNGTSMATP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ HP W+ A ++ + +TA+
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTAT 255
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
D+ APG +I + Y PT S + S+SGTSM+ PH++G+A LL S
Sbjct: 201 DVAAPGSSIYSTY-----PT--------STYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 210 AAIQSAIMTTA 220
+ I++AI TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS GP + D+ APG +I QS N + + +GTS + P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------QSTLPGN------KYGAYNGTSXASP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTT 219
H++G A+L+ HP+W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS G + ++ APG + + Y PT+ + +++GT M+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTXMASP 224
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ HP+ S + +++ + +TA+
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 35/142 (24%)
Query: 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPF 180
T GTK ++ FSS G + +KPDI APG++I+++ + +
Sbjct: 360 TASGTK----LSRFSSWG--LTADGNIKPDIAAPGQDILSSVA-------------NNKY 400
Query: 181 NSVSGTSMSCPHISGIASLLK----ILHPDWSPAA---IQSAIMTTAST--HDNNKQQIL 231
+SGTS S P ++GI LL+ +PD +P+ + ++ +++T +D +++
Sbjct: 401 AKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYF 460
Query: 232 NASFAEATPFSYGAGHVQPNLA 253
+P GAG V A
Sbjct: 461 -------SPRQQGAGAVDAKKA 475
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 24/121 (19%)
Query: 125 TKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRR---SPFN 181
T A+FS+ G ++ D+ APG++I++ ++ RR ++
Sbjct: 228 TTSRGIRASFSNYGVDV--------DLAAPGQDILST---------VDSGTRRPVSDAYS 270
Query: 182 SVSGTSMSCPHISGIASLL----KILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAE 237
++GTSM+ PH+SG+A+L+ ++ + +PA ++ +++T S + + L + +
Sbjct: 271 FMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSGIVD 330
Query: 238 A 238
A
Sbjct: 331 A 331
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 24/121 (19%)
Query: 125 TKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRR---SPFN 181
T A+FS+ G ++ D+ APG++I++ ++ RR ++
Sbjct: 228 TTSRGIRASFSNYGVDV--------DLAAPGQDILST---------VDSGTRRPVSDAYS 270
Query: 182 SVSGTSMSCPHISGIASLL----KILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAE 237
++GTSM+ PH+SG+A+L+ ++ + +PA ++ +++T S + + L + +
Sbjct: 271 FMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSGIVD 330
Query: 238 A 238
A
Sbjct: 331 A 331
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 24/121 (19%)
Query: 125 TKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRR---SPFN 181
T A+FS+ G ++ D+ APG++I++ ++ RR ++
Sbjct: 228 TTSRGIRASFSNYGVDV--------DLAAPGQDILST---------VDSGTRRPVSDAYS 270
Query: 182 SVSGTSMSCPHISGIASLL----KILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAE 237
++GTSM+ PH+SG+A+L+ ++ + +PA ++ +++T S + + L + +
Sbjct: 271 FMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSGIVD 330
Query: 238 A 238
A
Sbjct: 331 A 331
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
D+ APG I + Y PT S + S+SGTSM+ PH++G+A LL S
Sbjct: 201 DVAAPGSWIYSTY-----PT--------STYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 210 AAIQSAIMTTA 220
+ I++AI TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 180 FNSVSGTSMSCPHISGIASLLKILHPDWSPAAIQSAIMTTASTHDNN 226
+ + +GT M+ PH++G A+L+ HP W+ A ++ + +TA+ N+
Sbjct: 214 YGAYNGTXMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS G + D+ APG +I ++ P + + +GT M+ P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSI-----QSTLP--------GGTYGAYNGTCMATP 225
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTASTHDNN 226
H++G A+L+ HP W+ A ++ + +TA+ N+
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 131 MAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSC 190
+A FSS+GP +KPD+ APG I++A + + +P + S + + GTSM+
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 191 PHISGIASLLK 201
P ++G + L+
Sbjct: 259 PIVAGNVAQLR 269
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 125 TKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVS 184
T P A FS+ G + + APG NI++ Q+ RS + +
Sbjct: 229 TTPKGKRAPFSNYGARV--------HLAAPGTNILSTIDVGQAG------PVRSSYGMKA 274
Query: 185 GTSMSCPHISGIASLL 200
GTSM+ PH+SG+A+L+
Sbjct: 275 GTSMAAPHVSGVAALV 290
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 125 TKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVS 184
T P A FS+ G + + APG NI++ Q+ RS + +
Sbjct: 229 TTPKGKRAPFSNYGARV--------HLAAPGTNILSTIDVGQA------GPVRSSYGMKA 274
Query: 185 GTSMSCPHISGIASLL 200
GTSM+ PH+SG+A+L+
Sbjct: 275 GTSMAAPHVSGVAALV 290
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
+I+APG ++ + + +N++SGTSM+ PH+SG+A+ + +P S
Sbjct: 226 EISAPGSSVYSTW-------------YNGGYNTISGTSMATPHVSGLAAKIWAENPSLSN 272
Query: 210 AAIQSAIMTTASTHD 224
++S + A + D
Sbjct: 273 TQLRSNLQERAKSVD 287
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 21/90 (23%)
Query: 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191
A+FSS G + ++ APG ++ + Y P++ + S++GTSM+ P
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYSTY-----PSN--------TYTSLNGTSMASP 224
Query: 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221
H++G A+L+ +P S + +++ + +TA+
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTAT 254
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 131 MAAFSSKGPNIITPE--ILKPD--ITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGT 186
+A FSS+G + I K D I+APG + + + + + ++SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDG-------------GYATISGT 248
Query: 187 SMSCPHISGIASLLKILHPDWSPAAIQSAIMTTASTHD 224
SM+ PH +G+A+ + P S ++ + T AS +D
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT+M+ PH+SG+ +L++
Sbjct: 298 QPEVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQ 338
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT+M+ PH+SG+ +L++
Sbjct: 295 QPEVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQ 335
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT+M+ PH+SG+ +L++
Sbjct: 298 QPEVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQ 338
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT+M+ PH+SG+ +L++
Sbjct: 298 QPEVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQ 338
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT+M+ PH+SG+ +L++
Sbjct: 298 QPEVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQ 338
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT+M+ PH+SG+ +L++
Sbjct: 220 QPEVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQ 260
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT+M+ PH+SG+ +L++
Sbjct: 218 QPEVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQ 258
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT+M+ PH+SG+ +L++
Sbjct: 229 QPEVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQ 269
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT+M+ PH+SG+ +L++
Sbjct: 229 QPEVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQ 269
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 13/55 (23%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILH 204
DI APG NI++ + + N++SGTSM+ PHI G+ + L L
Sbjct: 203 DIFAPGSNILSTWIGGTT-------------NTISGTSMATPHIVGLGAYLAGLE 244
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
+I+APG ++ + + +N++SGT M+ PH+SG+A+ + +P S
Sbjct: 226 EISAPGSSVYSTW-------------YNGGYNTISGTXMATPHVSGLAAKIWAENPSLSN 272
Query: 210 AAIQSAIMTTASTHD 224
++S + A + D
Sbjct: 273 TQLRSNLQERAKSVD 287
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT M+ PH+SG+ +L++
Sbjct: 218 QPEVSAPGVDILSTYPD-------------DSYETLMGTXMATPHVSGVVALIQ 258
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 13/54 (24%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201
+P+++APG +I++ Y + + ++ GT M+ PH+SG+ +L++
Sbjct: 218 QPEVSAPGVDILSTYPD-------------DSYETLMGTCMATPHVSGVVALIQ 258
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 16/77 (20%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDW 207
K I APGE I+ A + P L +GTSM+ P ++GI++LL L
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 208 S----PAAIQSAIMTTA 220
A+++A++ TA
Sbjct: 313 GKPVDAEAVRTALLKTA 329
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 16/77 (20%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDW 207
K I APGE I+ A + P L +GTSM+ P ++GI++LL L
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 208 S----PAAIQSAIMTTA 220
A+++A++ TA
Sbjct: 313 GKPVDAEAVRTALLKTA 329
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 13/51 (25%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLL 200
DI APG +I + + ++ N++SGTSM+ PHI+G+A+ L
Sbjct: 201 DIFAPGTSITSTWIGGRT-------------NTISGTSMATPHIAGLAAYL 238
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 16/77 (20%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDW 207
K I APGE I+ A + P L +GTSM+ P ++GI++LL L
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 294
Query: 208 S----PAAIQSAIMTTA 220
A+++A++ TA
Sbjct: 295 GKPVDAEAVRTALLKTA 311
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 131 MAAFSSKGPNIITPEILKPDIT----APGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGT 186
+A FSS+ + + P +T PGE+ I ++ N ++ GT
Sbjct: 328 VAGFSSRSDGV---SVGAPGVTILSTVPGEDSIGYEGHNENVPATN----GGTYDYYQGT 380
Query: 187 SMSCPHISGIASLLKILHPDWSPAAIQSAIMTTASTHDNN 226
SM+ PH++G+ ++L P+ P I+ + TA + N
Sbjct: 381 SMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN 420
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 21/70 (30%)
Query: 131 MAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSC 190
+A+FS+ G + D+ APG +I++ T R + +SGTSM+
Sbjct: 191 LASFSNYGTWV--------DVVAPGVDIVSTIT-----------GNRYAY--MSGTSMAS 229
Query: 191 PHISGIASLL 200
PH++G+A+LL
Sbjct: 230 PHVAGLAALL 239
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 184 SGTSMSCPHISGIASL----LKILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAEAT 239
+GTS + PH++G +L LK + ++SP +I+ AI TA+
Sbjct: 459 NGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT------------KLGYVD 506
Query: 240 PFSYGAGHVQPNLAMDPGLVYDLTANDYLNFLCTLGYN 277
PF+ G G + A + + + ++ L F +G N
Sbjct: 507 PFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNN 544
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 13/50 (26%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASL 199
D+ APG I +A+ YD + ++SGTSM+ PH++G+A+L
Sbjct: 196 DLFAPGSQIKSAW----------YD---GGYKTISGTSMATPHVAGVAAL 232
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 131 MAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSC 190
+A FSS+GP +KPD+ APG I++A + + +P + S + GTS +
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYXGGTSXAT 258
Query: 191 PHISGIASLLK 201
P ++G + L+
Sbjct: 259 PIVAGNVAQLR 269
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 19/94 (20%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI PG +I++ + + S+SGTSM+ PH++G+A+ L L +
Sbjct: 200 DIFGPGTDILSTWIGGST-------------RSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 210 AAIQSAIMTTASTHDNNKQQILNASFAEATPFSY 243
+A + I TA NK + N F +Y
Sbjct: 247 SACR-YIADTA-----NKGDLSNIPFGTVNLLAY 274
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 19/94 (20%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI PG +I++ + + S+SGTSM+ PH++G+A+ L L +
Sbjct: 200 DIFGPGTSILSTWIGGST-------------RSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 210 AAIQSAIMTTASTHDNNKQQILNASFAEATPFSY 243
+A + I TA NK + N F +Y
Sbjct: 247 SACR-YIADTA-----NKGDLSNIPFGTVNLLAY 274
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209
DI PG +I++ + + S+SGTSM+ PH++G+A+ L L +
Sbjct: 200 DIFGPGTSILSTWIGGST-------------RSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 210 AAIQ 213
+A +
Sbjct: 247 SACR 250
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPD 206
DI APG I + Y + S + +SGT+M+ PH++G +L+ L D
Sbjct: 226 DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPD 206
DI APG I + Y + S + +SGT+M+ PH++G +L+ L D
Sbjct: 226 DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPD 206
DI APG I + Y + S + +SGT+M+ PH++G +L+ L D
Sbjct: 226 DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 150 DITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPD 206
DI APG I + Y + S + +SGT+M+ PH++G +L+ L D
Sbjct: 208 DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAED 251
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 33/131 (25%)
Query: 234 SFAEATPFSYGAGHVQPNLAMDPGLVYDLTANDYLNFLCTLGYNKKEIFW-------FSK 286
S A P+S + ++PN + PG + +T + Y GY + E+FW +
Sbjct: 102 SLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSY------QGYPEAEVFWKDGQGVPLTG 155
Query: 287 NYTYTCPNHTISLVDFNYPSISVPKLSGSITVTRKVKNVGSPGTYQALLKSP-----KGV 341
N T + + L D + +V R V +G+ GTY L+++P
Sbjct: 156 NVTTSQMANERGLFDVH-------------SVLRVV--LGANGTYSCLVRNPVLQQDAHG 200
Query: 342 SVTIAPKSLKF 352
SVTI + L F
Sbjct: 201 SVTITGQPLTF 211
>pdb|4GOX|A Chain A, Sulfotransferase Domain From The Synechococcus Pcc 7002
Olefin Synthase
Length = 313
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 36 LDPKKVKGKILVCLDVNTRSVDKXXXXXXXXXXXIVLVNLPEYGNDRMTDPHVLPASDIN 95
L P+ + K+ + NT D +++ P YG+DR H+L S+I
Sbjct: 90 LTPEASQAKVNQWVKANTPIADIYAYLQRQAEQRLLIDKSPSYGSDR----HILDHSEIL 145
Query: 96 FNDSVSLFSYITSIKHPVGYI 116
F+ + YI ++HP I
Sbjct: 146 FDQA----KYIHLVRHPYAVI 162
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 21/80 (26%)
Query: 148 KPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILH--- 204
K I APG++I+ A K +SGTS + P +SG+A+LL L
Sbjct: 198 KQGILAPGKDILGA-------------KPNGGTIRLSGTSFATPIVSGVAALLLSLQIKR 244
Query: 205 ---PDWSPAAIQSAIMTTAS 221
PD P +++A++ +A+
Sbjct: 245 GEKPD--PQKVKNALLASAT 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,974,809
Number of Sequences: 62578
Number of extensions: 482011
Number of successful extensions: 1169
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 112
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)