Query 015812
Match_columns 400
No_of_seqs 297 out of 2606
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 01:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05562 Peptidases_S53_like Pe 99.8 1.7E-20 3.7E-25 180.7 12.4 98 132-255 176-274 (275)
2 cd07475 Peptidases_S8_C5a_Pept 99.8 1.9E-18 4E-23 171.7 13.7 110 126-255 229-346 (346)
3 cd07478 Peptidases_S8_CspA-lik 99.8 4.5E-19 9.7E-24 182.0 8.7 94 128-246 356-455 (455)
4 cd07474 Peptidases_S8_subtilis 99.8 5.1E-18 1.1E-22 164.7 15.5 108 127-253 188-295 (295)
5 cd07497 Peptidases_S8_14 Pepti 99.8 1E-18 2.3E-23 171.0 8.8 88 128-220 218-311 (311)
6 cd02133 PA_C5a_like PA_C5a_lik 99.7 8.3E-18 1.8E-22 146.6 11.0 117 7-141 25-142 (143)
7 cd07489 Peptidases_S8_5 Peptid 99.7 3.7E-18 8E-23 167.3 8.4 112 132-258 189-301 (312)
8 cd04857 Peptidases_S8_Tripepti 99.7 1E-17 2.2E-22 168.4 8.2 83 128-223 326-412 (412)
9 cd07493 Peptidases_S8_9 Peptid 99.7 3.4E-17 7.3E-22 156.5 10.5 86 121-221 176-261 (261)
10 PTZ00262 subtilisin-like prote 99.7 3E-17 6.4E-22 170.8 10.8 98 131-260 521-618 (639)
11 cd07481 Peptidases_S8_Bacillop 99.7 6.1E-17 1.3E-21 155.0 11.6 85 122-221 178-264 (264)
12 cd05561 Peptidases_S8_4 Peptid 99.7 2.1E-17 4.6E-22 156.1 8.0 93 121-246 147-239 (239)
13 cd07479 Peptidases_S8_SKI-1_li 99.7 2.2E-17 4.7E-22 157.6 8.1 90 121-223 156-253 (255)
14 cd04847 Peptidases_S8_Subtilis 99.7 2.6E-17 5.6E-22 159.8 7.2 87 133-221 200-291 (291)
15 PF00082 Peptidase_S8: Subtila 99.6 3.6E-17 7.9E-22 157.1 2.3 115 122-255 168-282 (282)
16 cd07487 Peptidases_S8_1 Peptid 99.6 1.2E-15 2.7E-20 145.3 12.6 85 131-221 180-264 (264)
17 cd07483 Peptidases_S8_Subtilis 99.6 1.3E-15 2.8E-20 148.0 11.5 72 130-221 220-291 (291)
18 cd07476 Peptidases_S8_thiazoli 99.6 7E-16 1.5E-20 148.1 6.8 87 121-225 164-254 (267)
19 cd02120 PA_subtilisin_like PA_ 99.6 4.7E-15 1E-19 126.1 9.4 104 9-116 22-126 (126)
20 cd04842 Peptidases_S8_Kp43_pro 99.6 1.2E-14 2.6E-19 140.8 12.8 86 130-221 200-293 (293)
21 cd02129 PA_hSPPL_like PA_hSPPL 99.6 9.3E-15 2E-19 122.6 9.7 93 7-109 19-115 (120)
22 cd07498 Peptidases_S8_15 Pepti 99.6 1.2E-14 2.5E-19 137.2 10.9 87 121-219 156-242 (242)
23 cd04816 PA_SaNapH_like PA_SaNa 99.6 1.1E-14 2.4E-19 123.5 9.6 98 10-115 19-121 (122)
24 cd04843 Peptidases_S8_11 Pepti 99.6 4.8E-15 1E-19 143.0 8.3 81 130-221 192-277 (277)
25 cd04077 Peptidases_S8_PCSK9_Pr 99.6 1.5E-14 3.2E-19 137.7 11.0 83 121-222 173-255 (255)
26 cd02127 PA_hPAP21_like PA_hPAP 99.5 3.4E-14 7.4E-19 119.6 9.6 88 28-116 21-116 (118)
27 cd07490 Peptidases_S8_6 Peptid 99.5 1.3E-14 2.8E-19 137.7 7.7 90 122-221 155-254 (254)
28 cd07473 Peptidases_S8_Subtilis 99.5 3.8E-14 8.3E-19 134.9 10.9 81 121-221 179-259 (259)
29 cd07496 Peptidases_S8_13 Pepti 99.5 5.9E-14 1.3E-18 135.9 11.6 91 121-219 193-285 (285)
30 cd02122 PA_GRAIL_like PA _GRAI 99.5 3.8E-14 8.2E-19 122.5 9.0 90 27-116 43-138 (138)
31 cd04818 PA_subtilisin_1 PA_sub 99.5 6.1E-14 1.3E-18 118.2 9.3 88 27-115 26-117 (118)
32 PF02225 PA: PA domain; Inter 99.5 1.6E-14 3.4E-19 117.8 5.5 93 7-106 5-101 (101)
33 KOG1114 Tripeptidyl peptidase 99.5 3.6E-14 7.7E-19 149.1 9.3 100 131-255 454-557 (1304)
34 cd04059 Peptidases_S8_Protein_ 99.5 6E-14 1.3E-18 136.3 10.1 82 122-221 209-297 (297)
35 cd04852 Peptidases_S8_3 Peptid 99.5 2.2E-14 4.7E-19 140.4 6.9 72 147-221 236-307 (307)
36 cd02126 PA_EDEM3_like PA_EDEM3 99.5 7.1E-14 1.5E-18 119.2 9.0 86 28-114 27-124 (126)
37 cd07477 Peptidases_S8_Subtilis 99.5 9.8E-14 2.1E-18 129.5 10.1 78 121-219 152-229 (229)
38 cd02130 PA_ScAPY_like PA_ScAPY 99.5 1.3E-13 2.8E-18 116.9 9.6 86 29-115 32-121 (122)
39 cd07485 Peptidases_S8_Fervidol 99.5 4.2E-14 9E-19 136.1 7.4 84 121-219 188-273 (273)
40 cd02125 PA_VSR PA_VSR: Proteas 99.5 1.6E-13 3.6E-18 116.9 9.2 88 28-115 22-126 (127)
41 cd02132 PA_GO-like PA_GO-like: 99.5 2.5E-13 5.5E-18 117.7 10.5 84 28-114 48-137 (139)
42 cd07484 Peptidases_S8_Thermita 99.5 8.2E-14 1.8E-18 132.9 6.9 81 121-223 179-259 (260)
43 cd07480 Peptidases_S8_12 Pepti 99.4 1.9E-13 4.1E-18 133.2 8.1 101 128-251 196-296 (297)
44 cd00538 PA PA: Protease-associ 99.4 3.3E-13 7E-18 114.3 8.3 89 26-114 28-124 (126)
45 cd07494 Peptidases_S8_10 Pepti 99.4 2.6E-13 5.6E-18 132.4 8.6 76 144-224 195-286 (298)
46 cd07488 Peptidases_S8_2 Peptid 99.4 1.2E-13 2.6E-18 131.1 5.8 81 122-219 155-246 (247)
47 cd07492 Peptidases_S8_8 Peptid 99.4 7.7E-13 1.7E-17 123.3 10.8 62 147-221 161-222 (222)
48 cd02124 PA_PoS1_like PA_PoS1_l 99.4 5.9E-13 1.3E-17 113.8 8.8 88 27-115 40-128 (129)
49 cd04813 PA_1 PA_1: Protease-as 99.4 6.9E-13 1.5E-17 111.4 8.9 82 26-109 25-112 (117)
50 cd07482 Peptidases_S8_Lantibio 99.4 5.5E-13 1.2E-17 129.2 6.9 92 121-219 193-294 (294)
51 cd02123 PA_C_RZF_like PA_C-RZF 99.4 2.6E-12 5.6E-17 113.2 9.3 84 28-111 50-142 (153)
52 cd04848 Peptidases_S8_Autotran 99.4 6.5E-13 1.4E-17 126.2 5.9 85 121-221 181-267 (267)
53 cd04817 PA_VapT_like PA_VapT_l 99.4 2.8E-12 6.2E-17 110.5 9.1 74 36-109 50-134 (139)
54 KOG1153 Subtilisin-related pro 99.3 8.8E-13 1.9E-17 129.8 3.9 105 95-221 348-461 (501)
55 cd07491 Peptidases_S8_7 Peptid 99.2 2.3E-11 4.9E-16 115.6 9.3 65 121-203 165-229 (247)
56 cd04819 PA_2 PA_2: Protease-as 99.2 1.2E-10 2.5E-15 99.5 9.3 91 8-111 23-122 (127)
57 cd00306 Peptidases_S8_S53 Pept 99.1 3.7E-10 8E-15 104.6 10.8 77 124-219 164-241 (241)
58 KOG4266 Subtilisin kexin isozy 99.1 2.7E-11 5.9E-16 122.9 0.9 109 122-255 349-465 (1033)
59 PF06280 DUF1034: Fn3-like dom 98.9 2.2E-08 4.8E-13 83.5 11.5 86 310-396 4-112 (112)
60 cd04815 PA_M28_2 PA_M28_2: Pro 98.8 1E-08 2.3E-13 88.3 6.6 78 37-114 34-132 (134)
61 cd02128 PA_TfR PA_TfR: Proteas 98.6 4.4E-08 9.5E-13 88.1 5.8 71 38-108 51-155 (183)
62 cd04814 PA_M28_1 PA_M28_1: Pro 98.5 3.1E-07 6.8E-12 79.5 7.3 63 8-77 20-100 (142)
63 cd04822 PA_M28_1_3 PA_M28_1_3: 98.4 1E-06 2.3E-11 77.1 9.0 90 9-105 21-131 (151)
64 cd04820 PA_M28_1_1 PA_M28_1_1: 98.4 5.5E-07 1.2E-11 77.5 6.9 63 8-77 22-96 (137)
65 KOG2442 Uncharacterized conser 98.4 5.4E-07 1.2E-11 90.2 6.1 79 38-116 91-175 (541)
66 COG1404 AprE Subtilisin-like s 98.3 1.2E-06 2.6E-11 89.6 7.5 81 125-222 312-398 (508)
67 cd02121 PA_GCPII_like PA_GCPII 98.3 2.3E-06 4.9E-11 79.6 7.2 39 38-76 67-105 (220)
68 KOG3920 Uncharacterized conser 98.0 3.3E-06 7.2E-11 72.7 3.4 89 28-117 74-172 (193)
69 KOG4628 Predicted E3 ubiquitin 98.0 1.6E-05 3.5E-10 77.9 7.9 82 28-109 62-150 (348)
70 cd02131 PA_hNAALADL2_like PA_h 97.8 2.1E-05 4.5E-10 68.3 4.8 39 39-77 37-75 (153)
71 cd04056 Peptidases_S53 Peptida 97.3 0.00028 6E-09 70.9 5.1 48 144-205 249-299 (361)
72 cd04821 PA_M28_1_2 PA_M28_1_2: 97.2 0.00089 1.9E-08 59.1 6.3 63 8-77 22-103 (157)
73 PF14874 PapD-like: Flagellar- 96.9 0.041 8.8E-07 44.5 13.1 81 314-399 20-101 (102)
74 PF10633 NPCBM_assoc: NPCBM-as 96.1 0.022 4.9E-07 43.9 6.9 63 314-376 5-69 (78)
75 KOG3526 Subtilisin-like propro 94.5 0.0049 1.1E-07 60.5 -2.2 78 178-255 376-457 (629)
76 PF11614 FixG_C: IG-like fold 93.6 2.1 4.5E-05 35.6 12.3 56 315-371 32-88 (118)
77 COG1470 Predicted membrane pro 88.4 1.6 3.4E-05 44.8 7.4 63 314-376 397-461 (513)
78 PF00345 PapD_N: Pili and flag 83.8 12 0.00025 31.1 9.5 51 315-367 15-73 (122)
79 PF06030 DUF916: Bacterial pro 77.4 24 0.00052 29.7 9.2 68 314-384 27-119 (121)
80 smart00635 BID_2 Bacterial Ig- 76.2 9 0.0002 29.5 5.9 45 342-392 4-48 (81)
81 COG1470 Predicted membrane pro 75.6 38 0.00083 35.0 11.5 61 315-376 285-352 (513)
82 TIGR02745 ccoG_rdxA_fixG cytoc 75.6 19 0.00042 37.1 9.6 54 315-369 347-401 (434)
83 KOG3525 Subtilisin-like propro 74.7 1.4 3E-05 45.4 1.1 74 182-255 251-324 (431)
84 PF07718 Coatamer_beta_C: Coat 74.7 35 0.00075 29.6 9.4 64 318-384 73-138 (140)
85 PF00635 Motile_Sperm: MSP (Ma 73.1 19 0.00041 28.9 7.4 51 315-368 19-70 (109)
86 COG4934 Predicted protease [Po 72.8 2.8 6E-05 47.7 2.9 26 179-204 472-497 (1174)
87 KOG2195 Transferrin receptor a 68.4 5.4 0.00012 43.5 3.9 39 39-77 181-219 (702)
88 PF07610 DUF1573: Protein of u 62.2 30 0.00065 23.5 5.4 42 320-365 2-45 (45)
89 PF07705 CARDB: CARDB; InterP 61.3 46 0.00099 25.8 7.3 51 314-368 19-72 (101)
90 PRK15098 beta-D-glucoside gluc 48.5 51 0.0011 36.6 7.3 68 299-368 643-728 (765)
91 PF02845 CUE: CUE domain; Int 47.8 18 0.0004 24.1 2.4 24 197-220 5-28 (42)
92 PF05753 TRAP_beta: Translocon 47.6 1.4E+02 0.003 27.0 8.7 53 314-367 38-97 (181)
93 PLN03080 Probable beta-xylosid 45.1 61 0.0013 36.2 7.2 52 315-367 685-744 (779)
94 PF08260 Kinin: Insect kinin p 43.8 11 0.00024 16.3 0.5 6 133-138 3-8 (8)
95 PF02368 Big_2: Bacterial Ig-l 40.5 26 0.00055 26.6 2.5 26 342-368 4-29 (79)
96 PF00927 Transglut_C: Transglu 36.9 2.2E+02 0.0047 22.7 8.5 53 314-368 15-77 (107)
97 COG4882 Predicted aminopeptida 35.2 1E+02 0.0022 31.1 6.2 65 39-103 86-160 (486)
98 PF14572 Pribosyl_synth: Phosp 34.1 52 0.0011 29.9 3.7 38 39-76 79-120 (184)
99 PRK15019 CsdA-binding activato 32.7 44 0.00095 29.2 3.0 32 182-214 78-109 (147)
100 PF13940 Ldr_toxin: Toxin Ldr, 31.6 38 0.00083 21.7 1.7 13 188-200 14-26 (35)
101 TIGR03391 FeS_syn_CsdE cystein 31.5 48 0.001 28.6 3.0 32 182-214 73-104 (138)
102 PF08029 HisG_C: HisG, C-termi 30.9 84 0.0018 24.1 3.9 21 54-74 51-71 (75)
103 cd00407 Urease_beta Urease bet 30.8 1.5E+02 0.0033 24.1 5.5 49 314-363 18-81 (101)
104 PRK13203 ureB urease subunit b 30.0 1.4E+02 0.0031 24.3 5.2 49 314-363 18-81 (102)
105 PF04255 DUF433: Protein of un 28.9 49 0.0011 23.6 2.2 39 179-217 10-54 (56)
106 cd01356 AcnX_swivel Putative A 28.7 1.4E+02 0.003 25.3 5.2 44 32-75 33-79 (123)
107 PRK09296 cysteine desufuration 28.6 57 0.0012 28.1 3.0 32 182-214 68-99 (138)
108 TIGR00192 urease_beta urease, 28.0 1.7E+02 0.0036 23.9 5.3 49 314-363 18-81 (101)
109 PF00699 Urease_beta: Urease b 27.0 1.6E+02 0.0035 23.9 5.0 49 314-363 17-80 (100)
110 PF02657 SufE: Fe-S metabolism 26.7 67 0.0015 27.1 3.0 32 182-214 59-90 (125)
111 smart00546 CUE Domain that may 25.9 99 0.0022 20.5 3.2 25 196-220 5-29 (43)
112 COG2166 sufE Cysteine desulfur 25.8 64 0.0014 28.1 2.7 32 182-214 73-104 (144)
113 PRK13202 ureB urease subunit b 23.8 1.7E+02 0.0038 23.9 4.7 47 316-363 21-82 (104)
114 PRK13201 ureB urease subunit b 21.9 2.3E+02 0.0049 24.3 5.2 50 314-364 18-82 (136)
115 PRK15308 putative fimbrial pro 21.3 3.6E+02 0.0077 25.5 7.0 51 316-367 33-100 (234)
116 PF01989 DUF126: Protein of un 20.4 87 0.0019 24.5 2.3 38 35-72 21-62 (82)
117 PRK09918 putative fimbrial cha 20.4 3.3E+02 0.0072 25.4 6.7 51 314-366 38-93 (230)
118 TIGR01451 B_ant_repeat conserv 20.4 3.1E+02 0.0068 19.1 5.8 37 314-352 12-50 (53)
No 1
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.84 E-value=1.7e-20 Score=180.73 Aligned_cols=98 Identities=28% Similarity=0.340 Sum_probs=81.6
Q ss_pred cccCCCCCCCCCCCCCCCcEEcCCC-ceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCCCCCHH
Q 015812 132 AAFSSKGPNIITPEILKPDITAPGE-NIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSPA 210 (400)
Q Consensus 132 a~fSs~Gp~~~~~~~~KPdi~APG~-~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~~s~~ 210 (400)
+.|++|||.. ...+||||+|||+ ++.+.+. .+.|..++|||||||||||++|||+|++|+|++.
T Consensus 176 ~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~ 240 (275)
T cd05562 176 DPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGD-------------GDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPA 240 (275)
T ss_pred cCCcccCcCC--CCCcCCeEEcCCcccccCCCc-------------CCceeecccchHHHHHHHHHHHHHHHhCCCCCHH
Confidence 4566777876 6789999999975 4444433 2678999999999999999999999999999999
Q ss_pred HHHHHHHcccccCCCcchhhccccCCCCCCCCCCCceecccccCC
Q 015812 211 AIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLAMD 255 (400)
Q Consensus 211 ~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 255 (400)
+||++|++||+++.. +.....||||+||+.+|++
T Consensus 241 ~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 241 DIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 999999999987632 2345689999999999986
No 2
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.78 E-value=1.9e-18 Score=171.66 Aligned_cols=110 Identities=34% Similarity=0.489 Sum_probs=91.9
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhh--
Q 015812 126 KPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKIL-- 203 (400)
Q Consensus 126 ~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~-- 203 (400)
...+.++.||+|||.. ...+||||+|||.+|+++... +.|..++|||||||+|||++|||+|+
T Consensus 229 ~~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~ 293 (346)
T cd07475 229 PNGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLK 293 (346)
T ss_pred CCCCccCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999988 788999999999999988764 67899999999999999999999997
Q ss_pred --CCCCCHHH----HHHHHHcccccCCCcchhhccccCCCCCCCCCCCceecccccCC
Q 015812 204 --HPDWSPAA----IQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLAMD 255 (400)
Q Consensus 204 --~p~~s~~~----ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 255 (400)
+|.|++.+ ||++|++||.+..... .......+..+|+|+||+.+|++
T Consensus 294 ~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~-----~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 294 EKYPKLSGEELVDLVKNLLMNTATPPLDSE-----DTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred hhCCCCCHHHHHHHHHHHHHhcCCcccccC-----CCCccCCccccCcchhcHHHhhC
Confidence 78999876 7889999998532111 12345577889999999999984
No 3
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.77 E-value=4.5e-19 Score=182.00 Aligned_cols=94 Identities=30% Similarity=0.423 Sum_probs=83.1
Q ss_pred CCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhC---
Q 015812 128 APFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILH--- 204 (400)
Q Consensus 128 ~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~--- 204 (400)
.+.++.||||||+. ++.+||||+|||++|+++++. +.|..++|||||||||||++|||+|.+
T Consensus 356 ~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~ 420 (455)
T cd07478 356 NNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVR 420 (455)
T ss_pred CCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhc
Confidence 45699999999998 789999999999999999875 689999999999999999999999865
Q ss_pred ---CCCCHHHHHHHHHcccccCCCcchhhccccCCCCCCCCCCCc
Q 015812 205 ---PDWSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAG 246 (400)
Q Consensus 205 ---p~~s~~~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G 246 (400)
|.|++++||++|+.+|+++. ...+++.++|||
T Consensus 421 ~~~p~~~~~~ik~~L~~tA~~~~----------~~~~pn~~~GyG 455 (455)
T cd07478 421 GNDPYLYGEKIKTYLIRGARRRP----------GDEYPNPEWGYG 455 (455)
T ss_pred cCCCCCCHHHHHHHHHHhCccCC----------CCCCCCCCCCCC
Confidence 56799999999999998863 234577889998
No 4
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.77 E-value=5.1e-18 Score=164.66 Aligned_cols=108 Identities=39% Similarity=0.581 Sum_probs=88.3
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCCC
Q 015812 127 PAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPD 206 (400)
Q Consensus 127 ~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~ 206 (400)
.......|+++|+... ...+||||+|||++|++++... .+.|..++|||||||+|||++|||+|++|.
T Consensus 188 ~~~~~~~~~s~~~~~~-~~~~kpdv~apG~~i~~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~ 255 (295)
T cd07474 188 EADTVGPSSSRGPPTS-DSAIKPDIVAPGVDIMSTAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPD 255 (295)
T ss_pred CCCceeccCCCCCCCC-CCCcCCCEECCcCceEeeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCC
Confidence 3455666666664332 7789999999999999988752 367899999999999999999999999999
Q ss_pred CCHHHHHHHHHcccccCCCcchhhccccCCCCCCCCCCCceeccccc
Q 015812 207 WSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLA 253 (400)
Q Consensus 207 ~s~~~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 253 (400)
|++.+||++|++||.+....+ ....+...+|+|+||+.+|
T Consensus 256 l~~~~v~~~L~~tA~~~~~~~-------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 256 WSPAQIKAALMNTAKPLYDSD-------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CCHHHHHHHHHhhCcccccCC-------CCcCChhccCcceeccccC
Confidence 999999999999999875432 1223567899999999886
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.76 E-value=1e-18 Score=171.02 Aligned_cols=88 Identities=28% Similarity=0.372 Sum_probs=73.8
Q ss_pred CCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCC--
Q 015812 128 APFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHP-- 205 (400)
Q Consensus 128 ~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p-- 205 (400)
.+.++.||||||+. ++++||||+|||++|+++.+...... .......|..++|||||||||||++|||+|++|
T Consensus 218 ~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~ 292 (311)
T cd07497 218 SGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEK 292 (311)
T ss_pred CCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhh
Confidence 56789999999998 78999999999999999876532100 011235799999999999999999999999886
Q ss_pred ----CCCHHHHHHHHHccc
Q 015812 206 ----DWSPAAIQSAIMTTA 220 (400)
Q Consensus 206 ----~~s~~~ik~~l~~tA 220 (400)
.++|.+||++|++||
T Consensus 293 ~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 293 EGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cCCCCCCHHHHHHHHHhcC
Confidence 589999999999997
No 6
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.75 E-value=8.3e-18 Score=146.61 Aligned_cols=117 Identities=26% Similarity=0.245 Sum_probs=91.4
Q ss_pred CCeeeEEecccchhhccCcccccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCCCCC-C
Q 015812 7 DKLFPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGNDRMT-D 85 (400)
Q Consensus 7 ~~~~pLv~~~d~~~~~~~~~~~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~~~~-~ 85 (400)
....+|||.+. |.+.++...+++||||||+||.|.|.+|+++|+++||+|+||+|+..+...... .
T Consensus 25 ~~~~~lv~~g~-------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDAGL-------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEccC-------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 35677887653 334455567899999999999999999999999999999999998753211111 1
Q ss_pred CCccceeecChhhhhhhhhhhccccccccccccCCccCCCCCCCCCcccCCCCCCC
Q 015812 86 PHVLPASDINFNDSVSLFSYITSIKHPVGYITRPTTEFGTKPAPFMAAFSSKGPNI 141 (400)
Q Consensus 86 ~~~iP~~~I~~~dG~~l~~~i~s~~~~tatI~~~~~~~~~~~~~~~a~fSs~Gp~~ 141 (400)
...||+++|++++|+.|++|+++ .++|.+..+.. ..+++.++.||||||.-
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 24689999999999999999987 45666555544 46788999999999963
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.74 E-value=3.7e-18 Score=167.34 Aligned_cols=112 Identities=34% Similarity=0.412 Sum_probs=93.5
Q ss_pred cccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhC-CCCCHH
Q 015812 132 AAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILH-PDWSPA 210 (400)
Q Consensus 132 a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~-p~~s~~ 210 (400)
+.||+|||+. ....||||+|||++++++++.. .+.|..++|||||||+|||++||+++++ |.+++.
T Consensus 189 ~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~ 255 (312)
T cd07489 189 SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA-----------GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPA 255 (312)
T ss_pred CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC-----------CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 7899999998 6889999999999999988762 2468999999999999999999999999 999999
Q ss_pred HHHHHHHcccccCCCcchhhccccCCCCCCCCCCCceecccccCCCce
Q 015812 211 AIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLAMDPGL 258 (400)
Q Consensus 211 ~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~l 258 (400)
+||++|++||..+...+..- ....+.+...+|+|+||+.+|+...-
T Consensus 256 ~v~~~l~~ta~~~~~~~~~~--~~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 256 ELRDLLASTAKPLPWSDGTS--ALPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred HHHHHHHHhCccccccCCCc--cccCCCCHhhcCcceeeHHHHhcCCc
Confidence 99999999999875322100 01113567889999999999999543
No 8
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.72 E-value=1e-17 Score=168.38 Aligned_cols=83 Identities=28% Similarity=0.316 Sum_probs=71.9
Q ss_pred CCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHh----h
Q 015812 128 APFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKI----L 203 (400)
Q Consensus 128 ~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~----~ 203 (400)
.+.++.||||||+. ++.+||||+|||++|.+.-.. ....|..++|||||||||||++|||++ .
T Consensus 326 ~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~-----------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~ 392 (412)
T cd04857 326 PGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNW-----------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAE 392 (412)
T ss_pred CCccccccccCCcc--cCCcCceEEeCCCcEEEcccC-----------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhc
Confidence 45689999999998 899999999999999875211 125789999999999999999999975 5
Q ss_pred CCCCCHHHHHHHHHcccccC
Q 015812 204 HPDWSPAAIQSAIMTTASTH 223 (400)
Q Consensus 204 ~p~~s~~~ik~~l~~tA~~~ 223 (400)
+|+|+|.+||++|++||+++
T Consensus 393 ~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 393 GIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCCCCHHHHHHHHHHhCccC
Confidence 78999999999999999763
No 9
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.71 E-value=3.4e-17 Score=156.50 Aligned_cols=86 Identities=35% Similarity=0.533 Sum_probs=76.3
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLL 200 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl 200 (400)
.+...+..+.++.||++||.. ++.+||||+|||.+|++.... +.|..++|||||||||||++|||
T Consensus 176 ~Vga~~~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll 240 (261)
T cd07493 176 SVGAVDANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACL 240 (261)
T ss_pred EEEEeccCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHH
Confidence 344556677899999999987 788999999999999874432 67899999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHcccc
Q 015812 201 KILHPDWSPAAIQSAIMTTAS 221 (400)
Q Consensus 201 ~~~~p~~s~~~ik~~l~~tA~ 221 (400)
++++|+|++.+||++|++||+
T Consensus 241 ~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 241 WQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999984
No 10
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.71 E-value=3e-17 Score=170.77 Aligned_cols=98 Identities=20% Similarity=0.307 Sum_probs=78.8
Q ss_pred CcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCCCCCHH
Q 015812 131 MAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSPA 210 (400)
Q Consensus 131 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~~s~~ 210 (400)
++.||++|. .++||+|||++|+++++. +.|..++|||||||||||+||||++++|+|++.
T Consensus 521 ~s~~Snyg~-------~~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSA-------KYCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCC-------CcceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 345566652 235999999999999875 689999999999999999999999999999999
Q ss_pred HHHHHHHcccccCCCcchhhccccCCCCCCCCCCCceecccccCCCceee
Q 015812 211 AIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLAMDPGLVY 260 (400)
Q Consensus 211 ~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~lv~ 260 (400)
+|+++|+.||..+... .....++|+||+++|++..+-+
T Consensus 581 qV~~iL~~TA~~l~~~------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 581 EVIRILKESIVQLPSL------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHhCccCCCC------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999875321 1112234899999999865544
No 11
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.70 E-value=6.1e-17 Score=155.03 Aligned_cols=85 Identities=39% Similarity=0.546 Sum_probs=77.3
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHH
Q 015812 122 EFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201 (400)
Q Consensus 122 ~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~ 201 (400)
+......+.++.||++||.. ...+||||+|||.+|+++++. +.|..++|||||||+|||++|||+
T Consensus 178 Vga~~~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~ 242 (264)
T cd07481 178 VGATDRNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLW 242 (264)
T ss_pred EEecCCCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHH
Confidence 44456678899999999988 688999999999999988865 578999999999999999999999
Q ss_pred hhCCC--CCHHHHHHHHHcccc
Q 015812 202 ILHPD--WSPAAIQSAIMTTAS 221 (400)
Q Consensus 202 ~~~p~--~s~~~ik~~l~~tA~ 221 (400)
|++|. +++.|||++|++||+
T Consensus 243 ~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 243 SANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred HhCCCCCCCHHHHHHHHHHhcC
Confidence 99999 999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.70 E-value=2.1e-17 Score=156.15 Aligned_cols=93 Identities=22% Similarity=0.348 Sum_probs=79.8
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLL 200 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl 200 (400)
.+...+..+.++.||++|+.. ||.|||.+|+++.+. +.|..++|||||||||||++|||
T Consensus 147 ~V~a~~~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll 205 (239)
T cd05561 147 AVTAVDARGRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYVSGTSFAAPFVTAALALL 205 (239)
T ss_pred EEEeecCCCCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEeCCHHHHHHHHHHHHHHH
Confidence 344556678899999999876 999999999987654 68999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHcccccCCCcchhhccccCCCCCCCCCCCc
Q 015812 201 KILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAG 246 (400)
Q Consensus 201 ~~~~p~~s~~~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G 246 (400)
+|++| +++.+||++|++||..+.. +.....||||
T Consensus 206 ~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d~~~G~G 239 (239)
T cd05561 206 LQASP-LAPDDARARLAATAKDLGP-----------PGRDPVFGYG 239 (239)
T ss_pred HhcCC-CCHHHHHHHHHHHhhccCC-----------CCcCCCcCCC
Confidence 99999 9999999999999987632 3345678887
No 13
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.70 E-value=2.2e-17 Score=157.56 Aligned_cols=90 Identities=27% Similarity=0.355 Sum_probs=77.2
Q ss_pred ccCCCCCCCCCcccCCCCCCCC----CCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNII----TPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGI 196 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~ 196 (400)
.+...+..+.++.|||||++.. ..+.+||||.|||.+|+++... +.|..++|||||||||||+
T Consensus 156 ~Vga~~~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~ 222 (255)
T cd07479 156 GVGGIDFDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK-------------GGCRALSGTSVASPVVAGA 222 (255)
T ss_pred EEeeeccCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC-------------CCeEEeccHHHHHHHHHHH
Confidence 4455566889999999996531 2567899999999999987653 5788999999999999999
Q ss_pred HHHHHhhCC----CCCHHHHHHHHHcccccC
Q 015812 197 ASLLKILHP----DWSPAAIQSAIMTTASTH 223 (400)
Q Consensus 197 aALl~~~~p----~~s~~~ik~~l~~tA~~~ 223 (400)
+|||+|++| .++|.+||++|++||+++
T Consensus 223 aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 223 VALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred HHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 999999999 789999999999999875
No 14
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.69 E-value=2.6e-17 Score=159.80 Aligned_cols=87 Identities=28% Similarity=0.379 Sum_probs=70.4
Q ss_pred ccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCC-----CcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCCCC
Q 015812 133 AFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPT-----HLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDW 207 (400)
Q Consensus 133 ~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~-----~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~~ 207 (400)
.||||||.. .+.+||||+|||++|.+......... ........+.|..++|||||||||||++|||++++|++
T Consensus 200 ~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~ 277 (291)
T cd04847 200 ATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPEL 277 (291)
T ss_pred CccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCC
Confidence 399999998 89999999999999987543211000 00011234789999999999999999999999999999
Q ss_pred CHHHHHHHHHcccc
Q 015812 208 SPAAIQSAIMTTAS 221 (400)
Q Consensus 208 s~~~ik~~l~~tA~ 221 (400)
+|.+||++|+++|+
T Consensus 278 t~~~ikalL~~sA~ 291 (291)
T cd04847 278 SPETIRALLIHSAE 291 (291)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999999984
No 15
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.65 E-value=3.6e-17 Score=157.11 Aligned_cols=115 Identities=31% Similarity=0.466 Sum_probs=91.4
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHH
Q 015812 122 EFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLK 201 (400)
Q Consensus 122 ~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~ 201 (400)
+.+....+.++.||++|+.. ..+.+||||+|||.+|+++++... ...|...+|||||||+|||++|||+
T Consensus 168 Vg~~~~~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~GTS~Aap~vag~~All~ 236 (282)
T PF00082_consen 168 VGAVDNNGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSGTSFAAPVVAGAAALLL 236 (282)
T ss_dssp EEEEETTSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEESHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccc----------cccccccCcCCchHHHHHHHHHHHH
Confidence 33344456789999997654 278899999999999988876520 1357789999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHcccccCCCcchhhccccCCCCCCCCCCCceecccccCC
Q 015812 202 ILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLAMD 255 (400)
Q Consensus 202 ~~~p~~s~~~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 255 (400)
+++|.|++.+||.+|++||..+...+ .......+|+|++|+.+|++
T Consensus 237 ~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 237 SKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred HHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999875110 22344568999999999874
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.64 E-value=1.2e-15 Score=145.27 Aligned_cols=85 Identities=36% Similarity=0.588 Sum_probs=73.6
Q ss_pred CcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCCCCCHH
Q 015812 131 MAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSPA 210 (400)
Q Consensus 131 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~~s~~ 210 (400)
++.||++||.. .+.+||||+|||.+|++..+..... .....+.|..++|||||||+|||++|||+|++|.+++.
T Consensus 180 ~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~ 253 (264)
T cd07487 180 ISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPD 253 (264)
T ss_pred ccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHH
Confidence 89999999988 7899999999999999986542111 11224678999999999999999999999999999999
Q ss_pred HHHHHHHcccc
Q 015812 211 AIQSAIMTTAS 221 (400)
Q Consensus 211 ~ik~~l~~tA~ 221 (400)
+||++|++||+
T Consensus 254 ~ik~~L~~tA~ 264 (264)
T cd07487 254 EVKCILRDTAT 264 (264)
T ss_pred HHHHHHHhhcC
Confidence 99999999984
No 17
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.63 E-value=1.3e-15 Score=148.03 Aligned_cols=72 Identities=31% Similarity=0.563 Sum_probs=66.0
Q ss_pred CCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCCCCCH
Q 015812 130 FMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSP 209 (400)
Q Consensus 130 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~~s~ 209 (400)
.++.||++|+. +|||.|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++
T Consensus 220 ~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~ 279 (291)
T cd07483 220 LVANFSNYGKK-------NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTA 279 (291)
T ss_pred cccccCCCCCC-------ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 58999999974 34999999999998765 68999999999999999999999999999999
Q ss_pred HHHHHHHHcccc
Q 015812 210 AAIQSAIMTTAS 221 (400)
Q Consensus 210 ~~ik~~l~~tA~ 221 (400)
.|||++|++||.
T Consensus 280 ~~v~~~L~~ta~ 291 (291)
T cd07483 280 KEVKQIILESGV 291 (291)
T ss_pred HHHHHHHHHhCC
Confidence 999999999984
No 18
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.61 E-value=7e-16 Score=148.10 Aligned_cols=87 Identities=32% Similarity=0.376 Sum_probs=76.1
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLL 200 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl 200 (400)
.|...+..+.++.||+||+.. -||||+|||.+|+++++. +.|..++|||||||||||++|||
T Consensus 164 ~Vga~~~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aALl 225 (267)
T cd07476 164 AVGAMDDDGLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GEVVRRSGTSFAAAIVAGIAALL 225 (267)
T ss_pred EEEeecCCCCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CCeEEeccHHHHHHHHHHHHHHH
Confidence 444556677889999999764 388999999999998765 68999999999999999999999
Q ss_pred HhhCCC----CCHHHHHHHHHcccccCCC
Q 015812 201 KILHPD----WSPAAIQSAIMTTASTHDN 225 (400)
Q Consensus 201 ~~~~p~----~s~~~ik~~l~~tA~~~~~ 225 (400)
+|.+|. ++|++||++|++||+++..
T Consensus 226 ~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 226 LSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred HHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 999887 8999999999999998753
No 19
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.59 E-value=4.7e-15 Score=126.13 Aligned_cols=104 Identities=38% Similarity=0.660 Sum_probs=84.2
Q ss_pred eeeEEecccchhhccCcccccCCCCCCCCCCCccceEEEEeecCC-ChHHHHHHHHHcCCeEEEEEecCCCCCCCCCCCC
Q 015812 9 LFPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVNT-RSVDKGLQAALAGAAGIVLVNLPEYGNDRMTDPH 87 (400)
Q Consensus 9 ~~pLv~~~d~~~~~~~~~~~~~C~~~~~~~~~v~GKIVl~~rg~~-~~~~k~~~a~~aGA~gvIi~n~~~~~~~~~~~~~ 87 (400)
.+||++..+.. .......|.+..++..+++||||||+|+.| .+.+|..+++++||+|+|++++..+.........
T Consensus 22 ~~~~~~~~~~~----~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~~~~~~~ 97 (126)
T cd02120 22 TYPLVYKSANS----GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAH 97 (126)
T ss_pred ccceEeccCcC----CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCceeccccc
Confidence 78898855421 223457898888877899999999999999 9999999999999999999998764332223346
Q ss_pred ccceeecChhhhhhhhhhhcccccccccc
Q 015812 88 VLPASDINFNDSVSLFSYITSIKHPVGYI 116 (400)
Q Consensus 88 ~iP~~~I~~~dG~~l~~~i~s~~~~tatI 116 (400)
.+|+++|+.++|+.|++|++++.+++++|
T Consensus 98 ~iP~v~I~~~~g~~l~~y~~~~~~~~~~i 126 (126)
T cd02120 98 VLPAVHVDYEDGTAILSYINSTSNPTATI 126 (126)
T ss_pred ccceEEECHHHHHHHHHHHHcCCCcceeC
Confidence 79999999999999999999987766553
No 20
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.58 E-value=1.2e-14 Score=140.81 Aligned_cols=86 Identities=36% Similarity=0.577 Sum_probs=71.1
Q ss_pred CCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhC-----
Q 015812 130 FMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILH----- 204 (400)
Q Consensus 130 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~----- 204 (400)
.++.||++||.. .+.+||||+|||++|+++...... ........|...+|||||||||||++|||+|++
T Consensus 200 ~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~ 273 (293)
T cd04842 200 TVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYY 273 (293)
T ss_pred ccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 399999999987 788999999999999988754200 011224688999999999999999999999985
Q ss_pred C---CCCHHHHHHHHHcccc
Q 015812 205 P---DWSPAAIQSAIMTTAS 221 (400)
Q Consensus 205 p---~~s~~~ik~~l~~tA~ 221 (400)
| .+++.++|++|++||+
T Consensus 274 ~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 274 PTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCcCcCHHHHHHHHHhcCC
Confidence 4 6677899999999984
No 21
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.58 E-value=9.3e-15 Score=122.62 Aligned_cols=93 Identities=18% Similarity=0.320 Sum_probs=75.8
Q ss_pred CCeeeEEecccchhhccCcccccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCC----C
Q 015812 7 DKLFPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGND----R 82 (400)
Q Consensus 7 ~~~~pLv~~~d~~~~~~~~~~~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~----~ 82 (400)
...+||+.... ..+|.+..+...+++|||+|++||.|+|.+|+++|+++||+|+||||+...... .
T Consensus 19 ~~~~~~~~~~~----------~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~ 88 (120)
T cd02129 19 ATLLPLRNLTS----------SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRS 88 (120)
T ss_pred CcceeeecCCC----------cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Confidence 34578887653 478998887777899999999999999999999999999999999999753111 1
Q ss_pred CCCCCccceeecChhhhhhhhhhhccc
Q 015812 83 MTDPHVLPASDINFNDSVSLFSYITSI 109 (400)
Q Consensus 83 ~~~~~~iP~~~I~~~dG~~l~~~i~s~ 109 (400)
......||+++|++++|+.|++.+.++
T Consensus 89 ~~~~v~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 89 EYEKIDIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred CCcCCcccEEEEeHHHHHHHHHHhccC
Confidence 113457999999999999999988753
No 22
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.57 E-value=1.2e-14 Score=137.17 Aligned_cols=87 Identities=29% Similarity=0.420 Sum_probs=71.4
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLL 200 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl 200 (400)
.+...+..+.++.||+||+.. |+.|||++++........ ..+...+.|..++|||||||+|||++|||
T Consensus 156 ~Vga~~~~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All 223 (242)
T cd07498 156 AVAATDSNDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS----AGDYPGGGYGSFSGTSFASPVAAGVAALI 223 (242)
T ss_pred EEEEeCCCCCccCcCCCCCCe--------EEEeCcCCcccCCccccc----cccCCCCceEeeCcHHHHHHHHHHHHHHH
Confidence 444556678899999999987 999999999887543211 11123467889999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHcc
Q 015812 201 KILHPDWSPAAIQSAIMTT 219 (400)
Q Consensus 201 ~~~~p~~s~~~ik~~l~~t 219 (400)
+|++|+|++.+||++|++|
T Consensus 224 ~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 224 LSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999975
No 23
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.57 E-value=1.1e-14 Score=123.48 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=78.6
Q ss_pred eeEEecccchhhccCcccccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCC---CC-C-
Q 015812 10 FPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGND---RM-T- 84 (400)
Q Consensus 10 ~pLv~~~d~~~~~~~~~~~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~---~~-~- 84 (400)
-+|++... ...++|.+..++..+++||||||+||.|.|.+|.++|+++||+++||||+..+... .. .
T Consensus 19 ~~lv~~~~--------~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~ 90 (122)
T cd04816 19 APLVPLDP--------ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPN 90 (122)
T ss_pred EEEEEcCC--------CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCC
Confidence 47777542 22488998888778999999999999999999999999999999999998663211 11 1
Q ss_pred CCCccceeecChhhhhhhhhhhccccccccc
Q 015812 85 DPHVLPASDINFNDSVSLFSYITSIKHPVGY 115 (400)
Q Consensus 85 ~~~~iP~~~I~~~dG~~l~~~i~s~~~~tat 115 (400)
....||+++|++++|+.|+++++++.+++++
T Consensus 91 ~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~ 121 (122)
T cd04816 91 IDLKVPVGVITKAAGAALRRRLGAGETLELD 121 (122)
T ss_pred CCCeeeEEEEcHHHHHHHHHHHcCCCEEEEe
Confidence 2456999999999999999999988765443
No 24
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.57 E-value=4.8e-15 Score=143.04 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=64.9
Q ss_pred CCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHh----h-C
Q 015812 130 FMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKI----L-H 204 (400)
Q Consensus 130 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~----~-~ 204 (400)
..+.|||||+.. ||.|||++|+++++...... .....+.|..++|||||||||||++|||++ + +
T Consensus 192 ~~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~ 260 (277)
T cd04843 192 TRLAFSNYGSRV--------DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGG 260 (277)
T ss_pred ccccccCCCCcc--------ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCC
Confidence 389999999977 99999999999987532110 011123357899999999999999999975 3 4
Q ss_pred CCCCHHHHHHHHHcccc
Q 015812 205 PDWSPAAIQSAIMTTAS 221 (400)
Q Consensus 205 p~~s~~~ik~~l~~tA~ 221 (400)
|+|++.|||++|+.|+.
T Consensus 261 p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 261 TPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 99999999999999973
No 25
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.56 E-value=1.5e-14 Score=137.71 Aligned_cols=83 Identities=36% Similarity=0.580 Sum_probs=73.5
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLL 200 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl 200 (400)
.+...+..+..+.||++||.. |+.|||.+|+++.... .+.|..++|||||||+|||++|||
T Consensus 173 ~Vga~~~~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~All 233 (255)
T cd04077 173 TVGATDSDDARASFSNYGSCV--------DIFAPGVDILSAWIGS-----------DTATATLSGTSMAAPHVAGLAAYL 233 (255)
T ss_pred EEeccCCCCCccCcccCCCCC--------cEEeCCCCeEecccCC-----------CCcEEeeCcHHHHHHHHHHHHHHH
Confidence 445566677899999999987 9999999999887641 368899999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHccccc
Q 015812 201 KILHPDWSPAAIQSAIMTTAST 222 (400)
Q Consensus 201 ~~~~p~~s~~~ik~~l~~tA~~ 222 (400)
++++|.+++++||++|++||++
T Consensus 234 ~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 234 LSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred HhhCCCCCHHHHHHHHHhhccC
Confidence 9999999999999999999964
No 26
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.53 E-value=3.4e-14 Score=119.57 Aligned_cols=88 Identities=14% Similarity=0.194 Sum_probs=72.0
Q ss_pred ccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCC-CCCC-------CCCCccceeecChhhh
Q 015812 28 ALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYG-NDRM-------TDPHVLPASDINFNDS 99 (400)
Q Consensus 28 ~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~-~~~~-------~~~~~iP~~~I~~~dG 99 (400)
.++|.+.. +..+++|||+|++||.|+|.+|+++|+++||+++||||+.... .... .....||+++|++++|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 47898743 4568999999999999999999999999999999999986531 1111 1234799999999999
Q ss_pred hhhhhhhcccccccccc
Q 015812 100 VSLFSYITSIKHPVGYI 116 (400)
Q Consensus 100 ~~l~~~i~s~~~~tatI 116 (400)
+.|++.+.++..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988776655
No 27
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.53 E-value=1.3e-14 Score=137.75 Aligned_cols=90 Identities=38% Similarity=0.529 Sum_probs=73.6
Q ss_pred cCCCCCCCCCcccCCCC----------CCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhh
Q 015812 122 EFGTKPAPFMAAFSSKG----------PNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCP 191 (400)
Q Consensus 122 ~~~~~~~~~~a~fSs~G----------p~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP 191 (400)
+...+..+..+.||++| +.. .....|||+.|||.+|+++.... ...+.|..++|||||||
T Consensus 155 Vga~~~~~~~~~~s~~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP 224 (254)
T cd07490 155 VGAVDRDDEDAWFSSFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAP 224 (254)
T ss_pred EecccccCCccCccCCcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHH
Confidence 44456677888899877 221 24568999999999999865221 12468999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 015812 192 HISGIASLLKILHPDWSPAAIQSAIMTTAS 221 (400)
Q Consensus 192 ~vAG~aALl~~~~p~~s~~~ik~~l~~tA~ 221 (400)
+|||++|||++++|+|++.+||++|++||+
T Consensus 225 ~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 225 HVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999984
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.53 E-value=3.8e-14 Score=134.93 Aligned_cols=81 Identities=35% Similarity=0.579 Sum_probs=71.2
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLL 200 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl 200 (400)
.+......+.++.||++|+.. ||+.|||.++++..+. +.|..++|||||||+|||++||+
T Consensus 179 ~Vga~~~~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~-------------~~~~~~~GTS~AaP~vaG~~All 238 (259)
T cd07473 179 SVAATDSNDALASFSNYGKKT-------VDLAAPGVDILSTSPG-------------GGYGYMSGTSMATPHVAGAAALL 238 (259)
T ss_pred EEEecCCCCCcCcccCCCCCC-------cEEEeccCCeEeccCC-------------CcEEEeccHhHHHHHHHHHHHHH
Confidence 344556678899999999853 5999999999986543 68999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHcccc
Q 015812 201 KILHPDWSPAAIQSAIMTTAS 221 (400)
Q Consensus 201 ~~~~p~~s~~~ik~~l~~tA~ 221 (400)
+|++|.+++.+||++|++||+
T Consensus 239 ~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 239 LSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHhCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999984
No 29
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.52 E-value=5.9e-14 Score=135.88 Aligned_cols=91 Identities=30% Similarity=0.490 Sum_probs=72.8
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCC--CcCCCCCCCCceeeccccchhhHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPT--HLNYDKRRSPFNSVSGTSMSCPHISGIAS 198 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~--~~~~~~~~~~~~~~sGTSmAaP~vAG~aA 198 (400)
.+......+.++.||++|+.. ||.|||++|.++........ ..........|..++|||||||+|||++|
T Consensus 193 ~Vga~~~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aA 264 (285)
T cd07496 193 AVGATDLRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAA 264 (285)
T ss_pred EEeccCCCCCcccccCCCCCC--------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHH
Confidence 455566778899999999987 99999999998866432110 00111224678999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHcc
Q 015812 199 LLKILHPDWSPAAIQSAIMTT 219 (400)
Q Consensus 199 Ll~~~~p~~s~~~ik~~l~~t 219 (400)
||+|++|+|++.+||++|++|
T Consensus 265 lv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 265 LMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred HHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999876
No 30
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.52 E-value=3.8e-14 Score=122.52 Aligned_cols=90 Identities=20% Similarity=0.107 Sum_probs=74.2
Q ss_pred cccCCCCCCC--CCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCC-CC-C--CCCCccceeecChhhhh
Q 015812 27 NALICKKGTL--DPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGN-DR-M--TDPHVLPASDINFNDSV 100 (400)
Q Consensus 27 ~~~~C~~~~~--~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~-~~-~--~~~~~iP~~~I~~~dG~ 100 (400)
..++|.+... +..+++|||||++||.|+|.+|+++|+++||+++||||+.+.+. .. + .....+|+++|++++|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4588988776 56789999999999999999999999999999999999976221 11 1 12346899999999999
Q ss_pred hhhhhhcccccccccc
Q 015812 101 SLFSYITSIKHPVGYI 116 (400)
Q Consensus 101 ~l~~~i~s~~~~tatI 116 (400)
.|+++++++.+++++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999987766554
No 31
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.51 E-value=6.1e-14 Score=118.19 Aligned_cols=88 Identities=22% Similarity=0.088 Sum_probs=72.0
Q ss_pred cccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCCCC----CCCCccceeecChhhhhhh
Q 015812 27 NALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGNDRM----TDPHVLPASDINFNDSVSL 102 (400)
Q Consensus 27 ~~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~~~----~~~~~iP~~~I~~~dG~~l 102 (400)
..++|.+..++ .+++||||||+|+.|+|.+|..+++++||+|+||||+..+..... .....||+++|++++|+.|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45789887763 569999999999999999999999999999999999876421111 1235799999999999999
Q ss_pred hhhhccccccccc
Q 015812 103 FSYITSIKHPVGY 115 (400)
Q Consensus 103 ~~~i~s~~~~tat 115 (400)
++|++++.+++++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988766544
No 32
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.51 E-value=1.6e-14 Score=117.79 Aligned_cols=93 Identities=27% Similarity=0.360 Sum_probs=70.0
Q ss_pred CCeeeEEecccchhhccCcccccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCC----CCCC
Q 015812 7 DKLFPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEY----GNDR 82 (400)
Q Consensus 7 ~~~~pLv~~~d~~~~~~~~~~~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~----~~~~ 82 (400)
...+|||..... .....|.+..++..+++||||||+||.|+|.+|+++|+++||+|+||+|.... ....
T Consensus 5 ~~~~~lV~~~~~-------~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~ 77 (101)
T PF02225_consen 5 TVTGPLVPAGNG-------IDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSE 77 (101)
T ss_dssp EEEEEEEEETTE-------EECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEB
T ss_pred CEEEEEEEecCC-------CCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCccccc
Confidence 346889844431 22355666677788999999999999999999999999999999999992221 1112
Q ss_pred CCCCCccceeecChhhhhhhhhhh
Q 015812 83 MTDPHVLPASDINFNDSVSLFSYI 106 (400)
Q Consensus 83 ~~~~~~iP~~~I~~~dG~~l~~~i 106 (400)
......||+++|++++|+.|++||
T Consensus 78 ~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 78 DPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp TTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred CCCCcEEEEEEeCHHHHhhhhccC
Confidence 234578999999999999999986
No 33
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.6e-14 Score=149.09 Aligned_cols=100 Identities=28% Similarity=0.408 Sum_probs=83.0
Q ss_pred CcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHh----hCCC
Q 015812 131 MAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKI----LHPD 206 (400)
Q Consensus 131 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~----~~p~ 206 (400)
.=.+|||||+. ++.+--.|.|||+.|-+- |.. .-..-..|.|||||+|+++|..|||++ .+-.
T Consensus 454 ~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~----------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ 520 (1304)
T KOG1114|consen 454 PYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQY----------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIP 520 (1304)
T ss_pred ccccccCCCCc--CCCcceEEecCCccccCC-chh----------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCC
Confidence 55789999998 888888999999998543 321 013456899999999999999999965 5668
Q ss_pred CCHHHHHHHHHcccccCCCcchhhccccCCCCCCCCCCCceecccccCC
Q 015812 207 WSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLAMD 255 (400)
Q Consensus 207 ~s~~~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 255 (400)
|||..||.+|++||.++.+ ..+|.||.|++++.+|.+
T Consensus 521 ytpysVrrAlenTa~~l~~------------id~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 521 YTPYSVRRALENTATKLGD------------IDSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred CcHHHHHHHHHhcccccCc------------cchhccCcceeehhHHHH
Confidence 9999999999999999843 256999999999999876
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.51 E-value=6e-14 Score=136.29 Aligned_cols=82 Identities=21% Similarity=0.264 Sum_probs=68.7
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCc-------eeecccCCCCCCCcCCCCCCCCceeeccccchhhHHH
Q 015812 122 EFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGEN-------IIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHIS 194 (400)
Q Consensus 122 ~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~-------I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vA 194 (400)
+......+.++.||++|+.. ++.|||+. |+++.... ....|..++||||||||||
T Consensus 209 Vga~~~~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VA 270 (297)
T cd04059 209 VSAVTANGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAA 270 (297)
T ss_pred EEeeCCCCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhH
Confidence 44455678899999999987 89999988 55544331 0256788999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHcccc
Q 015812 195 GIASLLKILHPDWSPAAIQSAIMTTAS 221 (400)
Q Consensus 195 G~aALl~~~~p~~s~~~ik~~l~~tA~ 221 (400)
|++|||+|+||+|++.+||.+|++||+
T Consensus 271 G~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 271 GVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999984
No 35
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.50 E-value=2.2e-14 Score=140.41 Aligned_cols=72 Identities=58% Similarity=0.890 Sum_probs=61.5
Q ss_pred CCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 015812 147 LKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSPAAIQSAIMTTAS 221 (400)
Q Consensus 147 ~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~~s~~~ik~~l~~tA~ 221 (400)
.||||+|||.+|+++++.... .........|..++|||||||||||++|||+|+||+|+|.+||++|++||+
T Consensus 236 ~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 799999999999999874211 111233478999999999999999999999999999999999999999984
No 36
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.50 E-value=7.1e-14 Score=119.17 Aligned_cols=86 Identities=22% Similarity=0.185 Sum_probs=69.9
Q ss_pred ccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCC-----CC----C---CCCCccceeecC
Q 015812 28 ALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGN-----DR----M---TDPHVLPASDIN 95 (400)
Q Consensus 28 ~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~-----~~----~---~~~~~iP~~~I~ 95 (400)
..+|++... ..+++|||+|++||.|+|.+|+++|+++||+++||+|+..+.. .. . .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 478987543 5679999999999999999999999999999999998765320 10 0 124579999999
Q ss_pred hhhhhhhhhhhcccccccc
Q 015812 96 FNDSVSLFSYITSIKHPVG 114 (400)
Q Consensus 96 ~~dG~~l~~~i~s~~~~ta 114 (400)
+.+|+.|+++++++..+++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999998766544
No 37
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.49 E-value=9.8e-14 Score=129.53 Aligned_cols=78 Identities=32% Similarity=0.592 Sum_probs=70.0
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLL 200 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl 200 (400)
.+.+....+.+..||++|+.. |+.|||.+|+++++. +.|..++|||||||+|||++|||
T Consensus 152 ~Vga~~~~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~All 210 (229)
T cd07477 152 AVGAVDSNNNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGTSMATPHVAGVAALV 210 (229)
T ss_pred EEEeecCCCCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccHHHHHHHHHHHHHHH
Confidence 344556678899999999876 999999999998765 57899999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHcc
Q 015812 201 KILHPDWSPAAIQSAIMTT 219 (400)
Q Consensus 201 ~~~~p~~s~~~ik~~l~~t 219 (400)
+|++|++++.+||++|++|
T Consensus 211 ~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 211 WSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999976
No 38
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.49 E-value=1.3e-13 Score=116.94 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=70.4
Q ss_pred cCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCC--C--CCCCCccceeecChhhhhhhhh
Q 015812 29 LICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGND--R--MTDPHVLPASDINFNDSVSLFS 104 (400)
Q Consensus 29 ~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~--~--~~~~~~iP~~~I~~~dG~~l~~ 104 (400)
.+|.+..+ +.+++|||||++||.|.|.+|+++|+++||+|+||||+...+.. . ..+...||+++|++++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 57987655 45799999999999999999999999999999999998732211 1 1124579999999999999999
Q ss_pred hhccccccccc
Q 015812 105 YITSIKHPVGY 115 (400)
Q Consensus 105 ~i~s~~~~tat 115 (400)
.++++.+++++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99998776554
No 39
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.49 E-value=4.2e-14 Score=136.09 Aligned_cols=84 Identities=30% Similarity=0.506 Sum_probs=71.9
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCC-ceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGE-NIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASL 199 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~-~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aAL 199 (400)
.+......+.++.||++|+.. ||.|||. +|+++++.... ...+.|..++|||||||||||++||
T Consensus 188 ~V~a~~~~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAl 252 (273)
T cd07485 188 AVAALDTNDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAAL 252 (273)
T ss_pred EEEeccCCCCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHH
Confidence 455566778999999999876 9999999 89888765311 1236799999999999999999999
Q ss_pred HHhhCCC-CCHHHHHHHHHcc
Q 015812 200 LKILHPD-WSPAAIQSAIMTT 219 (400)
Q Consensus 200 l~~~~p~-~s~~~ik~~l~~t 219 (400)
|+|++|. |++.|||++|++|
T Consensus 253 l~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 253 VLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 9999999999986
No 40
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.47 E-value=1.6e-13 Score=116.90 Aligned_cols=88 Identities=18% Similarity=0.005 Sum_probs=69.8
Q ss_pred ccCCCCCCCCC-C-----CccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCCCC-----------CCCCccc
Q 015812 28 ALICKKGTLDP-K-----KVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGNDRM-----------TDPHVLP 90 (400)
Q Consensus 28 ~~~C~~~~~~~-~-----~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~~~-----------~~~~~iP 90 (400)
.++|.+..... + ...+||||++||+|+|.+|+++|+++||+++||||+.++....+ .....||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 57898765421 2 37899999999999999999999999999999999865321111 1234699
Q ss_pred eeecChhhhhhhhhhhccccccccc
Q 015812 91 ASDINFNDSVSLFSYITSIKHPVGY 115 (400)
Q Consensus 91 ~~~I~~~dG~~l~~~i~s~~~~tat 115 (400)
+++|++++|+.|++.+.++..++++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999998776554
No 41
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.47 E-value=2.5e-13 Score=117.71 Aligned_cols=84 Identities=18% Similarity=0.117 Sum_probs=68.9
Q ss_pred ccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCCCC------CCCCccceeecChhhhhh
Q 015812 28 ALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGNDRM------TDPHVLPASDINFNDSVS 101 (400)
Q Consensus 28 ~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~~~------~~~~~iP~~~I~~~dG~~ 101 (400)
.++|.+.. .+++|||||++||.|+|.+|+++|+++||+++||||+.+...... .....||+++|++++|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 47898764 379999999999999999999999999999999999865311111 113579999999999999
Q ss_pred hhhhhcccccccc
Q 015812 102 LFSYITSIKHPVG 114 (400)
Q Consensus 102 l~~~i~s~~~~ta 114 (400)
|+++++++..+++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998876554
No 42
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.46 E-value=8.2e-14 Score=132.86 Aligned_cols=81 Identities=32% Similarity=0.507 Sum_probs=72.1
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLL 200 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl 200 (400)
.+.+....+..+.||++|+.. |+.|||++|++..+. +.|..++|||||||+|||++||+
T Consensus 179 ~Vga~~~~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~ 237 (260)
T cd07484 179 AVAATDQDDKRASFSNYGKWV--------DVSAPGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALL 237 (260)
T ss_pred EEEeeCCCCCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHH
Confidence 344556678899999999876 999999999988654 58899999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHcccccC
Q 015812 201 KILHPDWSPAAIQSAIMTTASTH 223 (400)
Q Consensus 201 ~~~~p~~s~~~ik~~l~~tA~~~ 223 (400)
++++| |++.+||++|++||+.+
T Consensus 238 ~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 238 YSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HhcCC-CCHHHHHHHHHHhCccC
Confidence 99999 99999999999999864
No 43
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.44 E-value=1.9e-13 Score=133.16 Aligned_cols=101 Identities=24% Similarity=0.271 Sum_probs=73.3
Q ss_pred CCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCCCC
Q 015812 128 APFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDW 207 (400)
Q Consensus 128 ~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~~ 207 (400)
.+....|+++.+. ...+|||.|||.+|+++++. +.|..++|||||||+|||++||++|++|.+
T Consensus 196 ~~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~ 258 (297)
T cd07480 196 LGRTGNFSAVANF----SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKA 258 (297)
T ss_pred CCCCCCccccCCC----CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCccc
Confidence 3444555554432 23588999999999988765 689999999999999999999999999999
Q ss_pred CHHHHHHHHHcccccCCCcchhhccccCCCCCCCCCCCceeccc
Q 015812 208 SPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPN 251 (400)
Q Consensus 208 s~~~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 251 (400)
++.+++.+|+......-.. .........++|+|++++.
T Consensus 259 ~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 259 GGRALAALLQARLTAARTT------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred CHHHHHHHHHHHHhhcccC------CCCCCCChhhcCCceeecC
Confidence 9988888777432210000 0012345678999999874
No 44
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.44 E-value=3.3e-13 Score=114.28 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=73.2
Q ss_pred ccccCCCCCC--CCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCCC--C----CCCCccceeecChh
Q 015812 26 ENALICKKGT--LDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGNDR--M----TDPHVLPASDINFN 97 (400)
Q Consensus 26 ~~~~~C~~~~--~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~~--~----~~~~~iP~~~I~~~ 97 (400)
....+|.++. ++..+++||||||+||.|.|.+|.++|+++||+|+||+++....... . .....||+++|+.+
T Consensus 28 ~~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 28 GPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred cceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 3468898877 67788999999999999999999999999999999999987532111 1 13457999999999
Q ss_pred hhhhhhhhhcccccccc
Q 015812 98 DSVSLFSYITSIKHPVG 114 (400)
Q Consensus 98 dG~~l~~~i~s~~~~ta 114 (400)
+|+.|++|++++.+.++
T Consensus 108 ~g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 108 DGEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHHhcCCceEE
Confidence 99999999998765543
No 45
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.43 E-value=2.6e-13 Score=132.36 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=61.2
Q ss_pred CCCCCCcEE----------------cCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCCCC
Q 015812 144 PEILKPDIT----------------APGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDW 207 (400)
Q Consensus 144 ~~~~KPdi~----------------APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~~ 207 (400)
++..|||++ |||.+|.+...... ......+.|..++|||||||||||++|||+|++|.|
T Consensus 195 ~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~-----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~ 269 (298)
T cd07494 195 PGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFP-----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGL 269 (298)
T ss_pred CCCccCccccccCcCCcccccccccCCCcceeccccCCC-----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCC
Confidence 567889984 68988875543210 001124689999999999999999999999999999
Q ss_pred CHHHHHHHHHcccccCC
Q 015812 208 SPAAIQSAIMTTASTHD 224 (400)
Q Consensus 208 s~~~ik~~l~~tA~~~~ 224 (400)
++.+||++|+.||+++.
T Consensus 270 ~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 270 SPERARSLLNKTARDVT 286 (298)
T ss_pred CHHHHHHHHHHhCcccC
Confidence 99999999999998763
No 46
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.43 E-value=1.2e-13 Score=131.08 Aligned_cols=81 Identities=27% Similarity=0.212 Sum_probs=60.6
Q ss_pred cCCCCCCCCC---cccCCCC--CCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHH
Q 015812 122 EFGTKPAPFM---AAFSSKG--PNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGI 196 (400)
Q Consensus 122 ~~~~~~~~~~---a~fSs~G--p~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~ 196 (400)
|...+..+.. +.||++| |+. .+..||||+|||++|++ +. +.|..++|||||||||||+
T Consensus 155 VGA~d~~g~~~~~s~~sn~~~~~~~--~~~~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~ 217 (247)
T cd07488 155 VGSTDRNGDRFFASDVSNAGSEINS--YGRRKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGI 217 (247)
T ss_pred EEEecCCCCcceecccccccCCCCC--CCCceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHH
Confidence 3334444443 4566654 444 67789999999999988 22 5788999999999999999
Q ss_pred HHHHHhhCCCCC------HHHHHHHHHcc
Q 015812 197 ASLLKILHPDWS------PAAIQSAIMTT 219 (400)
Q Consensus 197 aALl~~~~p~~s------~~~ik~~l~~t 219 (400)
+|||++++|.+. -.++|.+++.+
T Consensus 218 aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 218 IALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred HHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 999999988665 44566666655
No 47
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.42 E-value=7.7e-13 Score=123.27 Aligned_cols=62 Identities=27% Similarity=0.477 Sum_probs=57.2
Q ss_pred CCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 015812 147 LKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHPDWSPAAIQSAIMTTAS 221 (400)
Q Consensus 147 ~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~~s~~~ik~~l~~tA~ 221 (400)
.++++.|||.+|+++++. +.|..++|||||||||||++|||+|++|+|++.|||++|+.||+
T Consensus 161 ~~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 161 IYVEFSADGVDIIAPAPH-------------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred CCceEEeCCCCeEeecCC-------------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 355999999999988765 58899999999999999999999999999999999999999984
No 48
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.42 E-value=5.9e-13 Score=113.80 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=69.8
Q ss_pred cccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCCC-CCCCCccceeecChhhhhhhhhh
Q 015812 27 NALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGNDR-MTDPHVLPASDINFNDSVSLFSY 105 (400)
Q Consensus 27 ~~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~~-~~~~~~iP~~~I~~~dG~~l~~~ 105 (400)
...+|.+.+.+..+++|||+|++||+|.|.+|+++|+++||+++||||+.++.... ..+...+|.+.+ +++|+.|++.
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~ 118 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDA 118 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHH
Confidence 45789987666668999999999999999999999999999999999987532211 122334666666 9999999999
Q ss_pred hccccccccc
Q 015812 106 ITSIKHPVGY 115 (400)
Q Consensus 106 i~s~~~~tat 115 (400)
++++..++++
T Consensus 119 l~~G~~vtv~ 128 (129)
T cd02124 119 LAAGSNVTVD 128 (129)
T ss_pred HhcCCeEEEe
Confidence 9988665543
No 49
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.42 E-value=6.9e-13 Score=111.44 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=67.1
Q ss_pred ccccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCC--CC----CCCCccceeecChhhh
Q 015812 26 ENALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGND--RM----TDPHVLPASDINFNDS 99 (400)
Q Consensus 26 ~~~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~--~~----~~~~~iP~~~I~~~dG 99 (400)
+..++|++. +.++++|||||++||+|+|.+|+++|+++||+++||||+..+... .. .....||+++|++++|
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345889766 567899999999999999999999999999999999998663211 11 2235799999999999
Q ss_pred hhhhhhhccc
Q 015812 100 VSLFSYITSI 109 (400)
Q Consensus 100 ~~l~~~i~s~ 109 (400)
++|++++.+.
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999988653
No 50
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.38 E-value=5.5e-13 Score=129.15 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=69.7
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCC--C-CCC------cCCCCCCCCceeeccccchhh
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQ--S-PTH------LNYDKRRSPFNSVSGTSMSCP 191 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~--~-~~~------~~~~~~~~~~~~~sGTSmAaP 191 (400)
.+...+..+.++.||++|+.. +|++|||+++........ . ... .......+.|..++|||||||
T Consensus 193 ~Vga~~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP 265 (294)
T cd07482 193 TVSATDNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAP 265 (294)
T ss_pred EEEeeCCCCCcCccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhH
Confidence 455567788899999999754 399999999853222110 0 000 001133578999999999999
Q ss_pred HHHHHHHHHHhhCCCCCH-HHHHHHHHcc
Q 015812 192 HISGIASLLKILHPDWSP-AAIQSAIMTT 219 (400)
Q Consensus 192 ~vAG~aALl~~~~p~~s~-~~ik~~l~~t 219 (400)
||||++|||+|++|.|++ .+||++|++|
T Consensus 266 ~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 266 KVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 999999999999999999 9999999986
No 51
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.36 E-value=2.6e-12 Score=113.17 Aligned_cols=84 Identities=14% Similarity=-0.022 Sum_probs=69.0
Q ss_pred ccCCCCCCCC---CCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCCC-CC-----CCCccceeecChhh
Q 015812 28 ALICKKGTLD---PKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGNDR-MT-----DPHVLPASDINFND 98 (400)
Q Consensus 28 ~~~C~~~~~~---~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~~-~~-----~~~~iP~~~I~~~d 98 (400)
.++|.+.... ..++.|||||++||+|+|.+|+++|+++||+++||||+..+.... .. ....||+++|++++
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 5789876653 378999999999999999999999999999999999986532111 11 14579999999999
Q ss_pred hhhhhhhhccccc
Q 015812 99 SVSLFSYITSIKH 111 (400)
Q Consensus 99 G~~l~~~i~s~~~ 111 (400)
|+.|+++++..+.
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 52
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.36 E-value=6.5e-13 Score=126.20 Aligned_cols=85 Identities=29% Similarity=0.457 Sum_probs=70.4
Q ss_pred ccCCCCCCCCCccc--CCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHH
Q 015812 121 TEFGTKPAPFMAAF--SSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIAS 198 (400)
Q Consensus 121 ~~~~~~~~~~~a~f--Ss~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aA 198 (400)
.+......+....| |++|... -..++.|||.+|+++.+.. ...|..++|||||||+|||++|
T Consensus 181 ~Vga~~~~~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~A 244 (267)
T cd04848 181 AVVAVDPNGTIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAA 244 (267)
T ss_pred EEEEecCCCCcccccccccchhh-----hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHH
Confidence 34445556677777 9998754 2347999999999887631 2578899999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHcccc
Q 015812 199 LLKILHPDWSPAAIQSAIMTTAS 221 (400)
Q Consensus 199 Ll~~~~p~~s~~~ik~~l~~tA~ 221 (400)
|++|++|+|++.+||++|++||+
T Consensus 245 l~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 245 LLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999984
No 53
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.36 E-value=2.8e-12 Score=110.53 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=61.0
Q ss_pred CCCCCccceEEEEeecCCC-----hHHHHHHHHHcCCeEEEEEecCCC-CC--CCCCC---CCccceeecChhhhhhhhh
Q 015812 36 LDPKKVKGKILVCLDVNTR-----SVDKGLQAALAGAAGIVLVNLPEY-GN--DRMTD---PHVLPASDINFNDSVSLFS 104 (400)
Q Consensus 36 ~~~~~v~GKIVl~~rg~~~-----~~~k~~~a~~aGA~gvIi~n~~~~-~~--~~~~~---~~~iP~~~I~~~dG~~l~~ 104 (400)
+...+++|||+|++||.|. |.+|+++|+++||+|+||||+... +. ....+ ...||++.|++++|++|++
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 4455899999999999999 999999999999999999999731 21 11111 3579999999999999999
Q ss_pred hhccc
Q 015812 105 YITSI 109 (400)
Q Consensus 105 ~i~s~ 109 (400)
++.++
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 98654
No 54
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.8e-13 Score=129.80 Aligned_cols=105 Identities=25% Similarity=0.334 Sum_probs=81.4
Q ss_pred ChhhhhhhhhhhccccccccccccCCccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCC
Q 015812 95 NFNDSVSLFSYITSIKHPVGYITRPTTEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYD 174 (400)
Q Consensus 95 ~~~dG~~l~~~i~s~~~~tatI~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~ 174 (400)
....|..-.+.....+ +.-...+++...+-.+.+|.|||||+++ ||.|||++|+|+|...
T Consensus 348 a~AAGNe~eDAC~~SP---ass~~aITVGAst~~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs--------- 407 (501)
T KOG1153|consen 348 AVAAGNEHEDACNSSP---ASSKKAITVGASTKNDTIAFFSNWGKCV--------DIFAPGVNILSSWIGS--------- 407 (501)
T ss_pred EEcCCCcchhhhccCc---ccccccEEecccccccchhhhcCcccee--------eeecCchhhhhhhhcC---------
Confidence 3344555445444432 3344456777778899999999999999 9999999999999874
Q ss_pred CCCCCceeeccccchhhHHHHHHHHHHhhCCC---------CCHHHHHHHHHcccc
Q 015812 175 KRRSPFNSVSGTSMSCPHISGIASLLKILHPD---------WSPAAIQSAIMTTAS 221 (400)
Q Consensus 175 ~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p~---------~s~~~ik~~l~~tA~ 221 (400)
...-.++||||||+|||||++|..++.+|. .++.++|..+..-..
T Consensus 408 --~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 408 --NNATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred --ccchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 245678999999999999999999999882 378888887776654
No 55
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.24 E-value=2.3e-11 Score=115.59 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=54.6
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHH
Q 015812 121 TEFGTKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLL 200 (400)
Q Consensus 121 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl 200 (400)
.+...+..+.++.||++|+.. |+.|||++|+++++.. ..+.|..++|||||||||||++||+
T Consensus 165 ~VgA~~~~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~~~~~~~~sGTS~Atp~vaGvaAL~ 226 (247)
T cd07491 165 RIGAADEDGGADAPVGDEDRV--------DYILPGENVEARDRPP----------LSNSFVTHTGSSVATALAAGLAALI 226 (247)
T ss_pred EEEeeCCCCCCccccCCCCcc--------eEEeCCCceecCCcCC----------CCCCeeeeccHHHHHHHHHHHHHHH
Confidence 344556677899999999887 9999999999887521 1368999999999999999999999
Q ss_pred Hhh
Q 015812 201 KIL 203 (400)
Q Consensus 201 ~~~ 203 (400)
++.
T Consensus 227 l~~ 229 (247)
T cd07491 227 LYC 229 (247)
T ss_pred HHH
Confidence 975
No 56
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.18 E-value=1.2e-10 Score=99.54 Aligned_cols=91 Identities=22% Similarity=0.153 Sum_probs=69.6
Q ss_pred CeeeEEecccchhhccCcccccCCCCCCCCCCCccceEEEEeecCC--ChHHHHHHHHHcCCeEEEEEecCCCCCCC---
Q 015812 8 KLFPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVNT--RSVDKGLQAALAGAAGIVLVNLPEYGNDR--- 82 (400)
Q Consensus 8 ~~~pLv~~~d~~~~~~~~~~~~~C~~~~~~~~~v~GKIVl~~rg~~--~~~~k~~~a~~aGA~gvIi~n~~~~~~~~--- 82 (400)
...+|||.+.. .+.++...+++|||||++|+.| .+.+|.++|+++||+|+|++|+..+....
T Consensus 23 ~~~~lV~~g~G-------------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 23 AKGEPVDAGYG-------------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred eeEEEEEeCCC-------------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 45777776532 1123335679999999999999 89999999999999999999876532110
Q ss_pred --C--CCCCccceeecChhhhhhhhhhhccccc
Q 015812 83 --M--TDPHVLPASDINFNDSVSLFSYITSIKH 111 (400)
Q Consensus 83 --~--~~~~~iP~~~I~~~dG~~l~~~i~s~~~ 111 (400)
. .....||++.|+.+||+.|++.++.+..
T Consensus 90 ~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 90 EGTEDGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred ccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 1 1235799999999999999999987644
No 57
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.12 E-value=3.7e-10 Score=104.57 Aligned_cols=77 Identities=34% Similarity=0.551 Sum_probs=60.8
Q ss_pred CCCCCCCCc-ccCCCCCCCCCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHh
Q 015812 124 GTKPAPFMA-AFSSKGPNIITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKI 202 (400)
Q Consensus 124 ~~~~~~~~a-~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~ 202 (400)
+....+... .++++|+ |||+.|||.++..... .....|..++|||||||+|||++||++|
T Consensus 164 a~~~~~~~~~~~~~~~~--------~~~~~apg~~~~~~~~-----------~~~~~~~~~~GTS~Aap~vaG~~Al~~~ 224 (241)
T cd00306 164 AVDRDGTPASPSSNGGA--------GVDIAAPGGDILSSPT-----------TGGGGYATLSGTSMAAPIVAGVAALLLS 224 (241)
T ss_pred ecCcCCCccCCcCCCCC--------CceEEeCcCCccCccc-----------CCCCCeEeeccHHHHHHHHHHHHHHHHH
Confidence 333444444 5555554 5699999999977511 1136889999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHcc
Q 015812 203 LHPDWSPAAIQSAIMTT 219 (400)
Q Consensus 203 ~~p~~s~~~ik~~l~~t 219 (400)
++|++++.++|++|+++
T Consensus 225 ~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 225 ANPDLTPAQVKAALLST 241 (241)
T ss_pred HCCCCCHHHHHHHHhhC
Confidence 99999999999999875
No 58
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.7e-11 Score=122.90 Aligned_cols=109 Identities=26% Similarity=0.359 Sum_probs=90.1
Q ss_pred cCCCCCCCCCcccCCCCCCC----CCCCCCCCcEEcCCCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHH
Q 015812 122 EFGTKPAPFMAAFSSKGPNI----ITPEILKPDITAPGENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIA 197 (400)
Q Consensus 122 ~~~~~~~~~~a~fSs~Gp~~----~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~a 197 (400)
+.+.+-.+.+|.|||||-+. ...+++||||++-|.+|.+.-.. .+...+||||.|+|.|||++
T Consensus 349 VGGIdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav 415 (1033)
T KOG4266|consen 349 VGGIDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAV 415 (1033)
T ss_pred eccccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhcee
Confidence 45667789999999999654 24678999999999998766543 57789999999999999999
Q ss_pred HHHHh----hCCCCCHHHHHHHHHcccccCCCcchhhccccCCCCCCCCCCCceecccccCC
Q 015812 198 SLLKI----LHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLAMD 255 (400)
Q Consensus 198 ALl~~----~~p~~s~~~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 255 (400)
+||.+ +.--+.|+.+|++|+..|..+.. ..-|.||+|.+|..++.+
T Consensus 416 ~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg------------~NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 416 CLLVSVEAQKKDLLNPASMKQALIEGAAKLPG------------PNMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eeEeeeheehhhccCHHHHHHHHHhHHhhCCC------------CchhhccCcchhHHHHHH
Confidence 99976 33346899999999999998743 234889999999988876
No 59
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.89 E-value=2.2e-08 Score=83.49 Aligned_cols=86 Identities=16% Similarity=0.307 Sum_probs=57.5
Q ss_pred ecCCCeEEEEEEEEEcCC-CceEEEEEeC--------CC----------Cc-eEEEecceeEeccCCcEEEEEEEEEEcc
Q 015812 310 PKLSGSITVTRKVKNVGS-PGTYQALLKS--------PK----------GV-SVTIAPKSLKFINVGEEKSFKVIIKAQN 369 (400)
Q Consensus 310 ~~~~~~~t~~rtvtnvg~-~~ty~~~v~~--------~~----------g~-~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 369 (400)
.+.....+++.+|+|.|+ ..+|+++... .. .. .+...|.+|++ ++|++++|+|+++++.
T Consensus 4 ~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 4 KDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPS 82 (112)
T ss_dssp EEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--G
T ss_pred cccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehh
Confidence 333345777788888888 8888876541 01 11 67778999999 8999999999999965
Q ss_pred CCC--CCCeEEEEEEEEcCCCc-EEEeeEE
Q 015812 370 ASV--TKDYAFGELIWSDDKHH-QVRSPIV 396 (400)
Q Consensus 370 ~~~--~~~~~~G~i~~~~~~~~-~vr~P~~ 396 (400)
+.. ...+++|||.+++..++ .++|||+
T Consensus 83 ~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 83 GLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp GGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 433 36799999999987776 9999995
No 60
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=98.79 E-value=1e-08 Score=88.29 Aligned_cols=78 Identities=21% Similarity=0.148 Sum_probs=62.1
Q ss_pred CCCCccceEEEEeecCC------ChHHH-------HHHHHHcCCeEEEEEecCCC-------CCCCC-CCCCccceeecC
Q 015812 37 DPKKVKGKILVCLDVNT------RSVDK-------GLQAALAGAAGIVLVNLPEY-------GNDRM-TDPHVLPASDIN 95 (400)
Q Consensus 37 ~~~~v~GKIVl~~rg~~------~~~~k-------~~~a~~aGA~gvIi~n~~~~-------~~~~~-~~~~~iP~~~I~ 95 (400)
+..+++|||||++|+.| .|..| .+.|+++||+|+|++|.... +.... .....||++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 88888 68999999999999996422 11111 223469999999
Q ss_pred hhhhhhhhhhhcccccccc
Q 015812 96 FNDSVSLFSYITSIKHPVG 114 (400)
Q Consensus 96 ~~dG~~l~~~i~s~~~~ta 114 (400)
.+||+.|...++++..+.+
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999998865544
No 61
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.63 E-value=4.4e-08 Score=88.12 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=56.8
Q ss_pred CCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCC------------------CCCCCC---------------
Q 015812 38 PKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEY------------------GNDRMT--------------- 84 (400)
Q Consensus 38 ~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~------------------~~~~~~--------------- 84 (400)
..+++||||||+||.|.+.+|+++|+++||+|+|||++..+ |....+
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 45899999999999999999999999999999999998421 000000
Q ss_pred -CCCccceeecChhhhhhhhhhhcc
Q 015812 85 -DPHVLPASDINFNDSVSLFSYITS 108 (400)
Q Consensus 85 -~~~~iP~~~I~~~dG~~l~~~i~s 108 (400)
....||++-|+.++++.|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 113589999999999999998854
No 62
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.50 E-value=3.1e-07 Score=79.49 Aligned_cols=63 Identities=29% Similarity=0.233 Sum_probs=52.6
Q ss_pred CeeeEEecccchhhccCcccccCCCCCCCCCCCccceEEEEeecCC------------------ChHHHHHHHHHcCCeE
Q 015812 8 KLFPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVNT------------------RSVDKGLQAALAGAAG 69 (400)
Q Consensus 8 ~~~pLv~~~d~~~~~~~~~~~~~C~~~~~~~~~v~GKIVl~~rg~~------------------~~~~k~~~a~~aGA~g 69 (400)
...||||.+-.. ....|...++...||+|||||+.||.| .+..|.++|+++||+|
T Consensus 20 ~~aelVfvGyGi-------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 20 KDAPLVFVGYGI-------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred cceeeEEecCCc-------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 468899987421 235688778878899999999999998 5778999999999999
Q ss_pred EEEEecCC
Q 015812 70 IVLVNLPE 77 (400)
Q Consensus 70 vIi~n~~~ 77 (400)
+|++++..
T Consensus 93 vIii~~~~ 100 (142)
T cd04814 93 VLIVHELA 100 (142)
T ss_pred EEEEeCCC
Confidence 99999865
No 63
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.44 E-value=1e-06 Score=77.10 Aligned_cols=90 Identities=22% Similarity=0.202 Sum_probs=62.2
Q ss_pred eeeEEecccchhhccCcccccCCCCCCCCCCCccceEEEEeecC------------------CChHHHHHHHHHcCCeEE
Q 015812 9 LFPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVN------------------TRSVDKGLQAALAGAAGI 70 (400)
Q Consensus 9 ~~pLv~~~d~~~~~~~~~~~~~C~~~~~~~~~v~GKIVl~~rg~------------------~~~~~k~~~a~~aGA~gv 70 (400)
.-||||++... ....|....+...|++|||||+.|+. |.+..|.++|+++||+||
T Consensus 21 tg~lVfvGyGi-------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 21 TAPVVFAGYGI-------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred eEeEEEecCCc-------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 46788876421 24568777777789999999998874 788999999999999999
Q ss_pred EEEecCCCCC---CCCCCCCccceeecChhhhhhhhhh
Q 015812 71 VLVNLPEYGN---DRMTDPHVLPASDINFNDSVSLFSY 105 (400)
Q Consensus 71 Ii~n~~~~~~---~~~~~~~~iP~~~I~~~dG~~l~~~ 105 (400)
|+|++..... ...+....-..++|+....+.++..
T Consensus 94 Iv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 94 IVVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred EEEeCCcccCcccccccccCccceEEechHHHHHHhhh
Confidence 9999865311 1111101112566776666666664
No 64
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.43 E-value=5.5e-07 Score=77.50 Aligned_cols=63 Identities=29% Similarity=0.267 Sum_probs=51.5
Q ss_pred CeeeEEecccchhhccCcccccCCCCCCCCCCCccceEEEEeecCCC------------hHHHHHHHHHcCCeEEEEEec
Q 015812 8 KLFPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVNTR------------SVDKGLQAALAGAAGIVLVNL 75 (400)
Q Consensus 8 ~~~pLv~~~d~~~~~~~~~~~~~C~~~~~~~~~v~GKIVl~~rg~~~------------~~~k~~~a~~aGA~gvIi~n~ 75 (400)
-.-+|||.+... ....|...++...|++|||||++++.|. +.+|.++|+++||+|+|+|++
T Consensus 22 v~gelVfvGyG~-------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 22 VEAPLVFVGYGL-------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred ceEeEEEecCCc-------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 457888877421 2356877777778999999999999984 778999999999999999998
Q ss_pred CC
Q 015812 76 PE 77 (400)
Q Consensus 76 ~~ 77 (400)
..
T Consensus 95 ~~ 96 (137)
T cd04820 95 PR 96 (137)
T ss_pred Cc
Confidence 55
No 65
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=98.36 E-value=5.4e-07 Score=90.19 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=64.2
Q ss_pred CCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCC------CCCCCCCCCccceeecChhhhhhhhhhhccccc
Q 015812 38 PKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEY------GNDRMTDPHVLPASDINFNDSVSLFSYITSIKH 111 (400)
Q Consensus 38 ~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~------~~~~~~~~~~iP~~~I~~~dG~~l~~~i~s~~~ 111 (400)
...++||++++.||+|.|.+|++.|+++||.+++|+|+..+ ++........||+++|.+++|+.+......+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 34689999999999999999999999999999999998542 122223356899999999999999987777666
Q ss_pred ccccc
Q 015812 112 PVGYI 116 (400)
Q Consensus 112 ~tatI 116 (400)
+++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 55544
No 66
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.2e-06 Score=89.65 Aligned_cols=81 Identities=36% Similarity=0.597 Sum_probs=66.8
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCcEEcCCCceee-----cccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHH
Q 015812 125 TKPAPFMAAFSSKGPNIITPEILKPDITAPGENIIA-----AYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASL 199 (400)
Q Consensus 125 ~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s-----a~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aAL 199 (400)
....+.++.||++|+.. ..+++|||.+|.+ .++.. ...|..++||||++||++|++||
T Consensus 312 ~~~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~-----------~~~~~~~~Gts~a~p~v~g~aal 374 (508)
T COG1404 312 LDLSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGD-----------GADYVTLSGTSMAAPHVSGVAAL 374 (508)
T ss_pred CCCCCccccccccCCCC------CcceeCCCccccccccceeeeCC-----------ccceEeeccccccccHHHHHHHH
Confidence 33468999999999751 2299999999987 33331 03499999999999999999999
Q ss_pred HHhhCC-CCCHHHHHHHHHccccc
Q 015812 200 LKILHP-DWSPAAIQSAIMTTAST 222 (400)
Q Consensus 200 l~~~~p-~~s~~~ik~~l~~tA~~ 222 (400)
+++.+| .+++.+++..+..++..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 375 VLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred HHccCcccCCHHHHHHHHhhcccc
Confidence 999999 89999999998888763
No 67
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.25 E-value=2.3e-06 Score=79.56 Aligned_cols=39 Identities=33% Similarity=0.331 Sum_probs=36.5
Q ss_pred CCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecC
Q 015812 38 PKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLP 76 (400)
Q Consensus 38 ~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~ 76 (400)
..+++|||||+++|.|.+.+|+++|+++||+|+|||++.
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCc
Confidence 568999999999999999999999999999999999974
No 68
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=98.04 E-value=3.3e-06 Score=72.70 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=68.5
Q ss_pred ccCCCCCCCCCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCCC----------CCCCCccceeecChh
Q 015812 28 ALICKKGTLDPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGNDR----------MTDPHVLPASDINFN 97 (400)
Q Consensus 28 ~~~C~~~~~~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~~----------~~~~~~iP~~~I~~~ 97 (400)
..+|.... |.-++.|.|+|++||+|+|..|..+++++||.++||-++......+ ..+...||++++-..
T Consensus 74 p~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~ 152 (193)
T KOG3920|consen 74 PHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGV 152 (193)
T ss_pred hhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEecc
Confidence 57897643 3456888999999999999999999999999999998876532221 123457999999999
Q ss_pred hhhhhhhhhccccccccccc
Q 015812 98 DSVSLFSYITSIKHPVGYIT 117 (400)
Q Consensus 98 dG~~l~~~i~s~~~~tatI~ 117 (400)
+|-.++.-++.-.-+-+.|.
T Consensus 153 ~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 153 TGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred ceEEEehhHHHhCCccEEEe
Confidence 99988888876555555554
No 69
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.6e-05 Score=77.94 Aligned_cols=82 Identities=15% Similarity=0.003 Sum_probs=64.4
Q ss_pred ccCCCCCCC---CCCCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCCCCCCCC----CCCCccceeecChhhhh
Q 015812 28 ALICKKGTL---DPKKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPEYGNDRM----TDPHVLPASDINFNDSV 100 (400)
Q Consensus 28 ~~~C~~~~~---~~~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~~~~~~~----~~~~~iP~~~I~~~dG~ 100 (400)
..+|++..- ....-...++|+.||+|+|.+|+.+|+++|.+++|+||+.+...... .....++.++|+..-|+
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 467877532 13456678999999999999999999999999999999866432221 23567999999999999
Q ss_pred hhhhhhccc
Q 015812 101 SLFSYITSI 109 (400)
Q Consensus 101 ~l~~~i~s~ 109 (400)
.|.+|...+
T Consensus 142 ~l~~~~~~~ 150 (348)
T KOG4628|consen 142 LLSSYAGRT 150 (348)
T ss_pred HHHHhhccc
Confidence 999986543
No 70
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.85 E-value=2.1e-05 Score=68.34 Aligned_cols=39 Identities=21% Similarity=0.061 Sum_probs=36.6
Q ss_pred CCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCC
Q 015812 39 KKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPE 77 (400)
Q Consensus 39 ~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~ 77 (400)
-+++|||||++.|...+..|+++|+++||+|+|||.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999999999999999999999999999999854
No 71
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=97.31 E-value=0.00028 Score=70.87 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=38.4
Q ss_pred CCCCCCcEEcC---CCceeecccCCCCCCCcCCCCCCCCceeeccccchhhHHHHHHHHHHhhCC
Q 015812 144 PEILKPDITAP---GENIIAAYTEAQSPTHLNYDKRRSPFNSVSGTSMSCPHISGIASLLKILHP 205 (400)
Q Consensus 144 ~~~~KPdi~AP---G~~I~sa~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~vAG~aALl~~~~p 205 (400)
.++-+|||+|. +...+..+. +.+..+.|||+|||++||++|||.|++.
T Consensus 249 ~gR~~PDVaa~a~~~~g~~i~~~--------------g~~~~~gGTS~aaP~~Ag~~Al~n~~~~ 299 (361)
T cd04056 249 SGRGVPDVAANADPGTGYLVVVN--------------GQWYLVGGTSAAAPLFAGLIALINQARL 299 (361)
T ss_pred CCCcCCeeecccCCCCCEEEEEC--------------CeEEeeCCccHHHHHHHHHHHHHHHHhh
Confidence 57889999998 444433221 5788899999999999999999999864
No 72
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.18 E-value=0.00089 Score=59.14 Aligned_cols=63 Identities=29% Similarity=0.184 Sum_probs=43.6
Q ss_pred CeeeEEecccchhhccCcccccCCCCCCCCCCCccceEEEEeecCCC-------------------hHHHHHHHHHcCCe
Q 015812 8 KLFPFISAEDAKLANASVENALICKKGTLDPKKVKGKILVCLDVNTR-------------------SVDKGLQAALAGAA 68 (400)
Q Consensus 8 ~~~pLv~~~d~~~~~~~~~~~~~C~~~~~~~~~v~GKIVl~~rg~~~-------------------~~~k~~~a~~aGA~ 68 (400)
..-||||.+-... +..-...++..-||+|||||+.+++-. +..|.+.|+++||+
T Consensus 22 ~~~elVFvGyGi~-------ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~ 94 (157)
T cd04821 22 KDSPLVFVGYGIV-------APEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAA 94 (157)
T ss_pred ccCCEEEeccCcc-------CcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCe
Confidence 4578888774211 000112245577999999999977542 33599999999999
Q ss_pred EEEEEecCC
Q 015812 69 GIVLVNLPE 77 (400)
Q Consensus 69 gvIi~n~~~ 77 (400)
|+|++.+..
T Consensus 95 gvi~v~~~~ 103 (157)
T cd04821 95 GALIVHETE 103 (157)
T ss_pred EEEEEeCCC
Confidence 999998743
No 73
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.86 E-value=0.041 Score=44.51 Aligned_cols=81 Identities=15% Similarity=0.196 Sum_probs=60.7
Q ss_pred CeEEEEEEEEEcCC-CceEEEEEeCCCCceEEEecceeEeccCCcEEEEEEEEEEccCCCCCCeEEEEEEEEcCCCcEEE
Q 015812 314 GSITVTRKVKNVGS-PGTYQALLKSPKGVSVTIAPKSLKFINVGEEKSFKVIIKAQNASVTKDYAFGELIWSDDKHHQVR 392 (400)
Q Consensus 314 ~~~t~~rtvtnvg~-~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~G~i~~~~~~~~~vr 392 (400)
...+.+.+++|.+. ...|++.........++++|..-.+ ++|++.+++|+|.+. ... ..+.+.|.+.-.. ..+.
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~--~~~-g~~~~~l~i~~e~-~~~~ 94 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPT--KPL-GDYEGSLVITTEG-GSFE 94 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC--CCC-ceEEEEEEEEECC-eEEE
Confidence 35677778999999 8889987644234567777877677 899999999999952 222 3458988887665 6899
Q ss_pred eeEEEEE
Q 015812 393 SPIVVKA 399 (400)
Q Consensus 393 ~P~~~~~ 399 (400)
+|+-+++
T Consensus 95 i~v~a~~ 101 (102)
T PF14874_consen 95 IPVKAEV 101 (102)
T ss_pred EEEEEEE
Confidence 9987764
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=96.14 E-value=0.022 Score=43.94 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=39.6
Q ss_pred CeEEEEEEEEEcCC--CceEEEEEeCCCCceEEEecceeEeccCCcEEEEEEEEEEccCCCCCCe
Q 015812 314 GSITVTRKVKNVGS--PGTYQALLKSPKGVSVTIAPKSLKFINVGEEKSFKVIIKAQNASVTKDY 376 (400)
Q Consensus 314 ~~~t~~rtvtnvg~--~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~ 376 (400)
...+++.+|+|.|. ....++++..|.|-++...|.++.--++|++++++++|+++.+...+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
Confidence 36888999999987 3568888889999998888887753289999999999999765555554
No 75
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.0049 Score=60.52 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=54.7
Q ss_pred CCceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccccCC-Ccch-hhcc--ccCCCCCCCCCCCceeccccc
Q 015812 178 SPFNSVSGTSMSCPHISGIASLLKILHPDWSPAAIQSAIMTTASTHD-NNKQ-QILN--ASFAEATPFSYGAGHVQPNLA 253 (400)
Q Consensus 178 ~~~~~~sGTSmAaP~vAG~aALl~~~~p~~s~~~ik~~l~~tA~~~~-~~~~-~~~~--~~~~~~~~~~~G~G~vn~~~A 253 (400)
.....-||||.|+|-.||+.||.++++|.++..+++-+-.-|.+... .++. .+.. .......+..||+|.+|+.+.
T Consensus 376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagam 455 (629)
T KOG3526|consen 376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAM 455 (629)
T ss_pred ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHH
Confidence 34446799999999999999999999999999999887766665421 1110 0000 112234566799999998776
Q ss_pred CC
Q 015812 254 MD 255 (400)
Q Consensus 254 ~~ 255 (400)
+.
T Consensus 456 v~ 457 (629)
T KOG3526|consen 456 VM 457 (629)
T ss_pred HH
Confidence 54
No 76
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.60 E-value=2.1 Score=35.56 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=39.9
Q ss_pred eEEEEEEEEEcCC-CceEEEEEeCCCCceEEEecceeEeccCCcEEEEEEEEEEccCC
Q 015812 315 SITVTRKVKNVGS-PGTYQALLKSPKGVSVTIAPKSLKFINVGEEKSFKVIIKAQNAS 371 (400)
Q Consensus 315 ~~t~~rtvtnvg~-~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 371 (400)
.-.++.++.|... +.+|++++..++|+++......+++ ++|++.++.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 4678888999999 9999999999889999665589999 899999999999987543
No 77
>COG1470 Predicted membrane protein [Function unknown]
Probab=88.41 E-value=1.6 Score=44.78 Aligned_cols=63 Identities=17% Similarity=0.347 Sum_probs=53.7
Q ss_pred CeEEEEEEEEEcCC--CceEEEEEeCCCCceEEEecceeEeccCCcEEEEEEEEEEccCCCCCCe
Q 015812 314 GSITVTRKVKNVGS--PGTYQALLKSPKGVSVTIAPKSLKFINVGEEKSFKVIIKAQNASVTKDY 376 (400)
Q Consensus 314 ~~~t~~rtvtnvg~--~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~ 376 (400)
...++...+.|.|+ .+.-+.++..|.|-++.|+|.++---++|+++++++|+++|.+..+++|
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE
Confidence 35888888999998 5668889999999999999997754489999999999999877777766
No 78
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=83.81 E-value=12 Score=31.10 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=38.6
Q ss_pred eEEEEEEEEEcCC-CceEEEEEeC---CC----CceEEEecceeEeccCCcEEEEEEEEEE
Q 015812 315 SITVTRKVKNVGS-PGTYQALLKS---PK----GVSVTIAPKSLKFINVGEEKSFKVIIKA 367 (400)
Q Consensus 315 ~~t~~rtvtnvg~-~~ty~~~v~~---~~----g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 367 (400)
..+.+.+|+|.++ ...+.+.+.. .. .-.+.++|..+.+ ++|+++.+.| +..
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG 73 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec
Confidence 4677888999888 6666666653 11 1257799999999 8999999999 664
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=77.41 E-value=24 Score=29.68 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=45.1
Q ss_pred CeEEEEEEEEEcCC-CceEEEEEeC----CCC--------------ce------EEEecceeEeccCCcEEEEEEEEEEc
Q 015812 314 GSITVTRKVKNVGS-PGTYQALLKS----PKG--------------VS------VTIAPKSLKFINVGEEKSFKVIIKAQ 368 (400)
Q Consensus 314 ~~~t~~rtvtnvg~-~~ty~~~v~~----~~g--------------~~------v~v~p~~~~~~~~g~~~~~~vt~~~~ 368 (400)
..+++..+|+|.++ ..+|.+.+.. ..| +. ++ .|..+++ +++++++++++++.|
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEE-CCCCEEEEEEEEEcC
Confidence 46888889999888 8888876521 111 11 22 2556888 899999999999986
Q ss_pred cCCCCCCeEEEEEEEE
Q 015812 369 NASVTKDYAFGELIWS 384 (400)
Q Consensus 369 ~~~~~~~~~~G~i~~~ 384 (400)
...-.| .+-|-|.++
T Consensus 105 ~~~f~G-~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDG-IILGGIYFS 119 (121)
T ss_pred CCCcCC-EEEeeEEEE
Confidence 433333 334556554
No 80
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=76.18 E-value=9 Score=29.48 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=32.0
Q ss_pred eEEEecceeEeccCCcEEEEEEEEEEccCCCCCCeEEEEEEEEcCCCcEEE
Q 015812 342 SVTIAPKSLKFINVGEEKSFKVIIKAQNASVTKDYAFGELIWSDDKHHQVR 392 (400)
Q Consensus 342 ~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~G~i~~~~~~~~~vr 392 (400)
.+++.|..+++ ..|+++.|+++++.. .... ...+.|++.+...+.
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~---~~~~--~~~v~w~Ssn~~vat 48 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPS---SAKV--TGKVTWTSSNPSVAT 48 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECC---CCCc--cceEEEEECCCcEEE
Confidence 57889999999 799999999998752 1112 567888876523433
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=75.58 E-value=38 Score=35.02 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=46.8
Q ss_pred eEEEEEEEEEcCC-CceEEEEEe-CCCCceEEEec-----ceeEeccCCcEEEEEEEEEEccCCCCCCe
Q 015812 315 SITVTRKVKNVGS-PGTYQALLK-SPKGVSVTIAP-----KSLKFINVGEEKSFKVIIKAQNASVTKDY 376 (400)
Q Consensus 315 ~~t~~rtvtnvg~-~~ty~~~v~-~~~g~~v~v~p-----~~~~~~~~g~~~~~~vt~~~~~~~~~~~~ 376 (400)
+..++.++.|.|. +.+|..++. .|++-...+.- +++.+ .+||+++|+|.+.++.....+.|
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Y 352 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTY 352 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCce
Confidence 5678888999999 999999998 78776665543 24455 78999999999998655555544
No 82
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=75.56 E-value=19 Score=37.15 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=46.2
Q ss_pred eEEEEEEEEEcCC-CceEEEEEeCCCCceEEEecceeEeccCCcEEEEEEEEEEcc
Q 015812 315 SITVTRKVKNVGS-PGTYQALLKSPKGVSVTIAPKSLKFINVGEEKSFKVIIKAQN 369 (400)
Q Consensus 315 ~~t~~rtvtnvg~-~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 369 (400)
....+.++.|.+. +.+|+.+++..++.++...++.+++ ++|++.++.|.+..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 4667788899998 9999999999899999876558888 8999999999998863
No 83
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=74.71 E-value=1.4 Score=45.39 Aligned_cols=74 Identities=23% Similarity=0.194 Sum_probs=55.3
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHcccccCCCcchhhccccCCCCCCCCCCCceecccccCC
Q 015812 182 SVSGTSMSCPHISGIASLLKILHPDWSPAAIQSAIMTTASTHDNNKQQILNASFAEATPFSYGAGHVQPNLAMD 255 (400)
Q Consensus 182 ~~sGTSmAaP~vAG~aALl~~~~p~~s~~~ik~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 255 (400)
--.|||.++|..||+.+|.++.+|.++-.++..++..++..........+...........+|.|++|...-+.
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~~~~ 324 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKALVS 324 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcchhhh
Confidence 45699999999999999999999999999999998888877543222222222222344568999999877655
No 84
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=74.68 E-value=35 Score=29.56 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=46.7
Q ss_pred EEEEEEEcCC--CceEEEEEeCCCCceEEEecceeEeccCCcEEEEEEEEEEccCCCCCCeEEEEEEEE
Q 015812 318 VTRKVKNVGS--PGTYQALLKSPKGVSVTIAPKSLKFINVGEEKSFKVIIKAQNASVTKDYAFGELIWS 384 (400)
Q Consensus 318 ~~rtvtnvg~--~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~G~i~~~ 384 (400)
+..-+-|-.+ -..-++.......+++.-.|..+++ .|++.++++.++... ....+..||.|++.
T Consensus 73 LDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVs--StetGvIfG~I~Yd 138 (140)
T PF07718_consen 73 LDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVS--STETGVIFGNIVYD 138 (140)
T ss_pred EEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEE--eccCCEEEEEEEEe
Confidence 3334455544 3445566656678898888999999 899999999999883 34456889999985
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=73.08 E-value=19 Score=28.86 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=38.4
Q ss_pred eEEEEEEEEEcCC-CceEEEEEeCCCCceEEEecceeEeccCCcEEEEEEEEEEc
Q 015812 315 SITVTRKVKNVGS-PGTYQALLKSPKGVSVTIAPKSLKFINVGEEKSFKVIIKAQ 368 (400)
Q Consensus 315 ~~t~~rtvtnvg~-~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~ 368 (400)
......+|+|.++ ...|.+....|.... |.|..-.+ .+|++.++.|++...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEec
Confidence 4677789999999 888988887776554 67998888 899999999999873
No 86
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=72.78 E-value=2.8 Score=47.70 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.6
Q ss_pred CceeeccccchhhHHHHHHHHHHhhC
Q 015812 179 PFNSVSGTSMSCPHISGIASLLKILH 204 (400)
Q Consensus 179 ~~~~~sGTSmAaP~vAG~aALl~~~~ 204 (400)
..-+..|||.|+|..||+.|++-|..
T Consensus 472 ~~~~~GGTS~AtPltAGiiAdi~q~~ 497 (1174)
T COG4934 472 QTYVAGGTSLATPLTAGIIADIEQYI 497 (1174)
T ss_pred EEEEecccccccchHHHHHHHHHHHh
Confidence 44578899999999999999998863
No 87
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=68.39 E-value=5.4 Score=43.54 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=35.3
Q ss_pred CCccceEEEEeecCCChHHHHHHHHHcCCeEEEEEecCC
Q 015812 39 KKVKGKILVCLDVNTRSVDKGLQAALAGAAGIVLVNLPE 77 (400)
Q Consensus 39 ~~v~GKIVl~~rg~~~~~~k~~~a~~aGA~gvIi~n~~~ 77 (400)
-+++|||+|.+.+...+..|..++.++||.|+|+|.+..
T Consensus 181 i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~ 219 (702)
T KOG2195|consen 181 INLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPY 219 (702)
T ss_pred ccccCceEEEEccccchhhhHhhHHHhhcCcEEEeeccc
Confidence 358899999999988899999999999999999998754
No 88
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=62.17 E-value=30 Score=23.51 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=23.0
Q ss_pred EEEEEcCC-CceEEEEEeCC-CCceEEEecceeEeccCCcEEEEEEEE
Q 015812 320 RKVKNVGS-PGTYQALLKSP-KGVSVTIAPKSLKFINVGEEKSFKVII 365 (400)
Q Consensus 320 rtvtnvg~-~~ty~~~v~~~-~g~~v~v~p~~~~~~~~g~~~~~~vt~ 365 (400)
++++|.|+ ...-+ .+... .=..+. .+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt~~~--~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCTTAE--YSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCEEee--CCcceE-CCCCEEEEEEEC
Confidence 56788887 43222 22222 223333 333335 899999988874
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=61.31 E-value=46 Score=25.79 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=32.3
Q ss_pred CeEEEEEEEEEcCC--CceEEEEEeCCCCceEEEeccee-EeccCCcEEEEEEEEEEc
Q 015812 314 GSITVTRKVKNVGS--PGTYQALLKSPKGVSVTIAPKSL-KFINVGEEKSFKVIIKAQ 368 (400)
Q Consensus 314 ~~~t~~rtvtnvg~--~~ty~~~v~~~~g~~v~v~p~~~-~~~~~g~~~~~~vt~~~~ 368 (400)
...+++.+|+|.|. ...+.+.+.. .|..+ .-..+ .+ ++|++.++++++..+
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~-~~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYL-DGNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEE-TTEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEE-CCcee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 46889999999998 4556666644 33333 11222 45 789999999888873
No 90
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=48.50 E-value=51 Score=36.65 Aligned_cols=68 Identities=19% Similarity=0.344 Sum_probs=40.8
Q ss_pred cccCCCCeEEeecC---------CCeEEEEEEEEEcCC-Cc--eEEEEEeCCCCceEE------EecceeEeccCCcEEE
Q 015812 299 LVDFNYPSISVPKL---------SGSITVTRKVKNVGS-PG--TYQALLKSPKGVSVT------IAPKSLKFINVGEEKS 360 (400)
Q Consensus 299 ~~~ln~ps~~v~~~---------~~~~t~~rtvtnvg~-~~--ty~~~v~~~~g~~v~------v~p~~~~~~~~g~~~~ 360 (400)
..-|.|-.|...++ .+..+++.+|+|+|+ +. +-.+=+..|.+- +. .--.++.+ ++||+++
T Consensus 643 G~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~~P~k~L~gF~Kv~L-~pGes~~ 720 (765)
T PRK15098 643 GYGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQDVTAS-MSRPVKELKGFEKIML-KPGETQT 720 (765)
T ss_pred cCCCCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccCCCCC-CCCHHHhccCceeEeE-CCCCeEE
Confidence 34456666655443 234788899999998 43 333334444321 11 11234456 8999999
Q ss_pred EEEEEEEc
Q 015812 361 FKVIIKAQ 368 (400)
Q Consensus 361 ~~vt~~~~ 368 (400)
++++++..
T Consensus 721 V~~~l~~~ 728 (765)
T PRK15098 721 VSFPIDIE 728 (765)
T ss_pred EEEeecHH
Confidence 99988863
No 91
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=47.77 E-value=18 Score=24.11 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=19.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHccc
Q 015812 197 ASLLKILHPDWSPAAIQSAIMTTA 220 (400)
Q Consensus 197 aALl~~~~p~~s~~~ik~~l~~tA 220 (400)
.--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 446789999999999999996653
No 92
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.57 E-value=1.4e+02 Score=27.00 Aligned_cols=53 Identities=26% Similarity=0.435 Sum_probs=35.4
Q ss_pred CeEEEEEEEEEcCCCceEEEEEeC---C-CCceEEEeccee---EeccCCcEEEEEEEEEE
Q 015812 314 GSITVTRKVKNVGSPGTYQALLKS---P-KGVSVTIAPKSL---KFINVGEEKSFKVIIKA 367 (400)
Q Consensus 314 ~~~t~~rtvtnvg~~~ty~~~v~~---~-~g~~v~v~p~~~---~~~~~g~~~~~~vt~~~ 367 (400)
...+++++|.|+|+..-|.+++.- | +.+++.---.+. ++ ++|+..+..+++.+
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i-~pg~~vsh~~vv~p 97 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERI-PPGENVSHSYVVRP 97 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEE-CCCCeEEEEEEEee
Confidence 468999999999996667777653 2 344442111111 23 78999888888886
No 93
>PLN03080 Probable beta-xylosidase; Provisional
Probab=45.11 E-value=61 Score=36.17 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=33.0
Q ss_pred eEEEEEEEEEcCC-CceEEE--EEeCCCC-----ceEEEecceeEeccCCcEEEEEEEEEE
Q 015812 315 SITVTRKVKNVGS-PGTYQA--LLKSPKG-----VSVTIAPKSLKFINVGEEKSFKVIIKA 367 (400)
Q Consensus 315 ~~t~~rtvtnvg~-~~ty~~--~v~~~~g-----~~v~v~p~~~~~~~~g~~~~~~vt~~~ 367 (400)
..+++.+|+|+|+ +....+ -+..|.+ ++--+--.++.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4778899999998 544433 3333421 111122345566 78999999988875
No 94
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=43.76 E-value=11 Score=16.30 Aligned_cols=6 Identities=67% Similarity=0.867 Sum_probs=4.5
Q ss_pred ccCCCC
Q 015812 133 AFSSKG 138 (400)
Q Consensus 133 ~fSs~G 138 (400)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 578887
No 95
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=40.46 E-value=26 Score=26.62 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=21.8
Q ss_pred eEEEecceeEeccCCcEEEEEEEEEEc
Q 015812 342 SVTIAPKSLKFINVGEEKSFKVIIKAQ 368 (400)
Q Consensus 342 ~v~v~p~~~~~~~~g~~~~~~vt~~~~ 368 (400)
+|++.|..+++ ..|++..|++++...
T Consensus 4 ~I~i~~~~~~l-~~G~~~~l~~~~~~~ 29 (79)
T PF02368_consen 4 SITITPTSVTL-KVGQTQQLTATVTPS 29 (79)
T ss_dssp SEEETTTEEEC-ETTCEETTEEEEEEE
T ss_pred EEEEECCEEEE-ECCCEEEEEEEEEEC
Confidence 46788998988 789999999888874
No 96
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=36.90 E-value=2.2e+02 Score=22.74 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=34.0
Q ss_pred CeEEEEEEEEEcCC-C-ceEEE-----EEeCCCCce---EEEecceeEeccCCcEEEEEEEEEEc
Q 015812 314 GSITVTRKVKNVGS-P-GTYQA-----LLKSPKGVS---VTIAPKSLKFINVGEEKSFKVIIKAQ 368 (400)
Q Consensus 314 ~~~t~~rtvtnvg~-~-~ty~~-----~v~~~~g~~---v~v~p~~~~~~~~g~~~~~~vt~~~~ 368 (400)
.+.++..+++|..+ . .+-++ .+.. .|+. ....-..+++ ++|++.++++++.+.
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPS 77 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HH
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEce
Confidence 46888899999887 5 44332 2333 4663 4555666777 899999999999873
No 97
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=35.16 E-value=1e+02 Score=31.07 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=43.5
Q ss_pred CCccceEEEEeecCCC--hHHHHHHHHHcCCeEEEEEecCCC-----CC---CCCCCCCccceeecChhhhhhhh
Q 015812 39 KKVKGKILVCLDVNTR--SVDKGLQAALAGAAGIVLVNLPEY-----GN---DRMTDPHVLPASDINFNDSVSLF 103 (400)
Q Consensus 39 ~~v~GKIVl~~rg~~~--~~~k~~~a~~aGA~gvIi~n~~~~-----~~---~~~~~~~~iP~~~I~~~dG~~l~ 103 (400)
.|..|++++-++-+.- .......|.++||-|+||-..+.. |+ .....+..||++.+...++..+.
T Consensus 86 gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~ 160 (486)
T COG4882 86 GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGYSVSSSPTPIPVAVVPENYSRYAE 160 (486)
T ss_pred CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEecccccccCCCCCCCcceEEeccCcchhhc
Confidence 4788888888876543 223335678899999999876542 22 22334677999999777765544
No 98
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=34.11 E-value=52 Score=29.87 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=28.7
Q ss_pred CCccceEEEEeecCC----ChHHHHHHHHHcCCeEEEEEecC
Q 015812 39 KKVKGKILVCLDVNT----RSVDKGLQAALAGAAGIVLVNLP 76 (400)
Q Consensus 39 ~~v~GKIVl~~rg~~----~~~~k~~~a~~aGA~gvIi~n~~ 76 (400)
-||+||++++-..-+ ++...++.++++||..+..+-.-
T Consensus 79 GDV~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTH 120 (184)
T PF14572_consen 79 GDVKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATH 120 (184)
T ss_dssp S--TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEE
T ss_pred EEccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeC
Confidence 489999998876533 47777889999999999888764
No 99
>PRK15019 CsdA-binding activator; Provisional
Probab=32.69 E-value=44 Score=29.19 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=26.5
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 015812 182 SVSGTSMSCPHISGIASLLKILHPDWSPAAIQS 214 (400)
Q Consensus 182 ~~sGTSmAaP~vAG~aALl~~~~p~~s~~~ik~ 214 (400)
.+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344445 37999999999999999999999865
No 100
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=31.64 E-value=38 Score=21.73 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHH
Q 015812 188 MSCPHISGIASLL 200 (400)
Q Consensus 188 mAaP~vAG~aALl 200 (400)
.|+|.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 101
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=31.47 E-value=48 Score=28.60 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=26.9
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 015812 182 SVSGTSMSCPHISGIASLLKILHPDWSPAAIQS 214 (400)
Q Consensus 182 ~~sGTSmAaP~vAG~aALl~~~~p~~s~~~ik~ 214 (400)
.+.|.| =|+.|-|++|||.+.+-+.+|++|.+
T Consensus 73 ~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 73 HFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 455555 37999999999999999999999864
No 102
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=30.86 E-value=84 Score=24.08 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHcCCeEEEEEe
Q 015812 54 RSVDKGLQAALAGAAGIVLVN 74 (400)
Q Consensus 54 ~~~~k~~~a~~aGA~gvIi~n 74 (400)
.+.+....++++||.+++++.
T Consensus 51 ~~~~~~~~Lk~~GA~~Ilv~p 71 (75)
T PF08029_consen 51 QVWDLMDKLKAAGASDILVLP 71 (75)
T ss_dssp CHHHHHHHHHCTT-EEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEe
Confidence 577888999999999999986
No 103
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=30.85 E-value=1.5e+02 Score=24.11 Aligned_cols=49 Identities=35% Similarity=0.574 Sum_probs=30.2
Q ss_pred CeEEEEEEEEEcCC-C----ceEEEEEeC---------CCCceEEEe-cceeEeccCCcEEEEEE
Q 015812 314 GSITVTRKVKNVGS-P----GTYQALLKS---------PKGVSVTIA-PKSLKFINVGEEKSFKV 363 (400)
Q Consensus 314 ~~~t~~rtvtnvg~-~----~ty~~~v~~---------~~g~~v~v~-p~~~~~~~~g~~~~~~v 363 (400)
+..+++.+|+|.|+ + +.|+.--.. .-|..+.+. -..+.| .+|+++++++
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 81 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVEL 81 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEE
Confidence 45678888999998 4 344431111 125555552 246677 7899998776
No 104
>PRK13203 ureB urease subunit beta; Reviewed
Probab=29.96 E-value=1.4e+02 Score=24.27 Aligned_cols=49 Identities=27% Similarity=0.536 Sum_probs=29.7
Q ss_pred CeEEEEEEEEEcCC-C----ceEEEEEeC---------CCCceEEEe-cceeEeccCCcEEEEEE
Q 015812 314 GSITVTRKVKNVGS-P----GTYQALLKS---------PKGVSVTIA-PKSLKFINVGEEKSFKV 363 (400)
Q Consensus 314 ~~~t~~rtvtnvg~-~----~ty~~~v~~---------~~g~~v~v~-p~~~~~~~~g~~~~~~v 363 (400)
+..+++.+|+|.|+ + +.|+.--.. .-|..+.+- -..+.| .+|+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 81 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRF-EPGQTREVEL 81 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeE-CCCCeEEEEE
Confidence 45678888999998 4 344431111 125555542 246677 7899988776
No 105
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=28.87 E-value=49 Score=23.64 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=24.0
Q ss_pred CceeeccccchhhHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 015812 179 PFNSVSGTSMSCPHISGIAS------LLKILHPDWSPAAIQSAIM 217 (400)
Q Consensus 179 ~~~~~sGTSmAaP~vAG~aA------Ll~~~~p~~s~~~ik~~l~ 217 (400)
+--.+-||-+..=.+....+ -+.+.||+++.++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 44567788877665555432 3456799999999999884
No 106
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=28.69 E-value=1.4e+02 Score=25.29 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=26.7
Q ss_pred CCCCCCCCCccceEEEEee--cCCChHHHHHHHHHcCCe-EEEEEec
Q 015812 32 KKGTLDPKKVKGKILVCLD--VNTRSVDKGLQAALAGAA-GIVLVNL 75 (400)
Q Consensus 32 ~~~~~~~~~v~GKIVl~~r--g~~~~~~k~~~a~~aGA~-gvIi~n~ 75 (400)
...++....++|||++... |.|.-..-...++..|-+ ..|+...
T Consensus 33 ~~H~l~G~si~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~~~ 79 (123)
T cd01356 33 PHHPLYGESIAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVFEE 79 (123)
T ss_pred CCCCcCCCcccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEeecC
Confidence 3345667889999999984 677644444445544432 4444443
No 107
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=28.58 E-value=57 Score=28.13 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=26.6
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 015812 182 SVSGTSMSCPHISGIASLLKILHPDWSPAAIQS 214 (400)
Q Consensus 182 ~~sGTSmAaP~vAG~aALl~~~~p~~s~~~ik~ 214 (400)
.+.|-| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 48999999999999999999999864
No 108
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=28.02 E-value=1.7e+02 Score=23.86 Aligned_cols=49 Identities=35% Similarity=0.552 Sum_probs=30.0
Q ss_pred CeEEEEEEEEEcCC-C----ceEEEEEe---------CCCCceEEEe-cceeEeccCCcEEEEEE
Q 015812 314 GSITVTRKVKNVGS-P----GTYQALLK---------SPKGVSVTIA-PKSLKFINVGEEKSFKV 363 (400)
Q Consensus 314 ~~~t~~rtvtnvg~-~----~ty~~~v~---------~~~g~~v~v~-p~~~~~~~~g~~~~~~v 363 (400)
+..+.+.+|+|.|+ + +.|+.--. ..-|..+.+. -..+.| .+|+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 81 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVEL 81 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEE
Confidence 45677888999998 4 34443111 1135555552 246677 7899998776
No 109
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=27.00 E-value=1.6e+02 Score=23.93 Aligned_cols=49 Identities=24% Similarity=0.501 Sum_probs=24.6
Q ss_pred CeEEEEEEEEEcCC-C----ceEEEEEeC---------CCCceEEEe-cceeEeccCCcEEEEEE
Q 015812 314 GSITVTRKVKNVGS-P----GTYQALLKS---------PKGVSVTIA-PKSLKFINVGEEKSFKV 363 (400)
Q Consensus 314 ~~~t~~rtvtnvg~-~----~ty~~~v~~---------~~g~~v~v~-p~~~~~~~~g~~~~~~v 363 (400)
+..+++.+|+|.|+ + +.|+.--.. .-|..+.+- -+.+.| .+|+++++++
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRF-EPG~~k~V~L 80 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRF-EPGDTKEVEL 80 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE--TT-EEEEEE
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEE-CCCCcEEEEE
Confidence 46788899999998 4 223321000 125555542 135667 6788888766
No 110
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=26.74 E-value=67 Score=27.11 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.8
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 015812 182 SVSGTSMSCPHISGIASLLKILHPDWSPAAIQS 214 (400)
Q Consensus 182 ~~sGTSmAaP~vAG~aALl~~~~p~~s~~~ik~ 214 (400)
.+.|.|= ++.|-|++||+.+.+-+.+|++|.+
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~ 90 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILA 90 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHH
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4555555 5799999999999999999999865
No 111
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=25.92 E-value=99 Score=20.50 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHccc
Q 015812 196 IASLLKILHPDWSPAAIQSAIMTTA 220 (400)
Q Consensus 196 ~aALl~~~~p~~s~~~ik~~l~~tA 220 (400)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998643
No 112
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=64 Score=28.07 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=25.6
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 015812 182 SVSGTSMSCPHISGIASLLKILHPDWSPAAIQS 214 (400)
Q Consensus 182 ~~sGTSmAaP~vAG~aALl~~~~p~~s~~~ik~ 214 (400)
.+.|=|= |++|.|.+|++...+-..+|++|..
T Consensus 73 ~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3444443 6899999999999999999999843
No 113
>PRK13202 ureB urease subunit beta; Reviewed
Probab=23.79 E-value=1.7e+02 Score=23.90 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=29.1
Q ss_pred EEEEEEEEEcCC-C----ceEEEEEeC---------CCCceEEEe-cceeEeccCCcEEEEEE
Q 015812 316 ITVTRKVKNVGS-P----GTYQALLKS---------PKGVSVTIA-PKSLKFINVGEEKSFKV 363 (400)
Q Consensus 316 ~t~~rtvtnvg~-~----~ty~~~v~~---------~~g~~v~v~-p~~~~~~~~g~~~~~~v 363 (400)
.+++.+|+|.|+ + +.|+.--.. .-|..+.+. -..+.| .+|+++++++
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 82 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGL 82 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEE
Confidence 678888999998 4 444431111 125555552 246677 7899988776
No 114
>PRK13201 ureB urease subunit beta; Reviewed
Probab=21.94 E-value=2.3e+02 Score=24.30 Aligned_cols=50 Identities=18% Similarity=0.391 Sum_probs=29.8
Q ss_pred CeEEEEEEEEEcCC-C----ceEEEEEeC---------CCCceEEEe-cceeEeccCCcEEEEEEE
Q 015812 314 GSITVTRKVKNVGS-P----GTYQALLKS---------PKGVSVTIA-PKSLKFINVGEEKSFKVI 364 (400)
Q Consensus 314 ~~~t~~rtvtnvg~-~----~ty~~~v~~---------~~g~~v~v~-p~~~~~~~~g~~~~~~vt 364 (400)
+..+++.+|+|.|+ + +.|+.--.. .-|..+.+. -..+.| .+|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 45678888999998 4 344431111 125555542 245667 77888887763
No 115
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=21.30 E-value=3.6e+02 Score=25.45 Aligned_cols=51 Identities=12% Similarity=0.228 Sum_probs=32.9
Q ss_pred EEEEEEEEEcCC-CceEEEEE---eCC-------------CCceEEEecceeEeccCCcEEEEEEEEEE
Q 015812 316 ITVTRKVKNVGS-PGTYQALL---KSP-------------KGVSVTIAPKSLKFINVGEEKSFKVIIKA 367 (400)
Q Consensus 316 ~t~~rtvtnvg~-~~ty~~~v---~~~-------------~g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 367 (400)
.....+|.|.|+ ..-+++++ ..| +.-.+-++|..|++ ++|+++.|.|.-..
T Consensus 33 ~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 33 EATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred ceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 344566777776 55555543 222 11257789999999 88999888875543
No 116
>PF01989 DUF126: Protein of unknown function DUF126; InterPro: IPR002840 These archaebacterial proteins have no known function.; PDB: 2HI6_A.
Probab=20.39 E-value=87 Score=24.51 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=17.9
Q ss_pred CCCCCCccceEEEEee--cCCChHHHHHHHHHcC--CeEEEE
Q 015812 35 TLDPKKVKGKILVCLD--VNTRSVDKGLQAALAG--AAGIVL 72 (400)
Q Consensus 35 ~~~~~~v~GKIVl~~r--g~~~~~~k~~~a~~aG--A~gvIi 72 (400)
++....++|||++... |.|.-..-...++..| -+++|+
T Consensus 21 ~l~G~si~gkILv~p~~kGSt~gs~vl~~l~~~g~aPaAiI~ 62 (82)
T PF01989_consen 21 PLEGQSIAGKILVFPSGKGSTVGSYVLYELKKNGTAPAAIIF 62 (82)
T ss_dssp SSTT-B-TTSEEEES--S--SS-TTHHHHHHHHT-S-SEEEE
T ss_pred CcCCCcccCeEEEecCCCCccHHHHHHHHHHHCCCCCeEEEE
Confidence 3456789999999985 5665333333333333 345544
No 117
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.38 E-value=3.3e+02 Score=25.37 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=34.5
Q ss_pred CeEEEEEEEEEcCCCceEEE--EEeCC---CCceEEEecceeEeccCCcEEEEEEEEE
Q 015812 314 GSITVTRKVKNVGSPGTYQA--LLKSP---KGVSVTIAPKSLKFINVGEEKSFKVIIK 366 (400)
Q Consensus 314 ~~~t~~rtvtnvg~~~ty~~--~v~~~---~g~~v~v~p~~~~~~~~g~~~~~~vt~~ 366 (400)
+....+.+|+|.++ ..|.+ .++.. ....+-|+|..+++ .+|+++.++|...
T Consensus 38 ~~~~~si~v~N~~~-~p~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~ 93 (230)
T PRK09918 38 SDGEGSINVKNTDS-NPILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILK 93 (230)
T ss_pred CCCeEEEEEEcCCC-CcEEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEEC
Confidence 35667778888876 22333 23211 12457889999999 8999999888765
No 118
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=20.36 E-value=3.1e+02 Score=19.14 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=23.5
Q ss_pred CeEEEEEEEEEcCC-C-ceEEEEEeCCCCceEEEecceeEe
Q 015812 314 GSITVTRKVKNVGS-P-GTYQALLKSPKGVSVTIAPKSLKF 352 (400)
Q Consensus 314 ~~~t~~rtvtnvg~-~-~ty~~~v~~~~g~~v~v~p~~~~~ 352 (400)
...+++.+++|.|. . ....+.-..|+|+.. .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 46888889999997 3 334444445666654 3555554
Done!