Query 015813
Match_columns 400
No_of_seqs 264 out of 1874
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 01:08:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 6.8E-33 1.5E-37 264.6 33.0 305 89-394 11-333 (358)
2 PRK11689 aromatic amino acid e 100.0 1E-32 2.2E-37 259.3 31.3 287 90-396 3-294 (295)
3 PRK11272 putative DMT superfam 100.0 2E-31 4.4E-36 250.2 33.9 276 92-393 9-289 (292)
4 PRK11453 O-acetylserine/cystei 100.0 5.5E-31 1.2E-35 248.1 33.9 276 93-395 6-293 (299)
5 PRK15430 putative chlorampheni 100.0 4.7E-31 1E-35 248.1 31.1 275 88-392 5-288 (296)
6 PRK10532 threonine and homoser 100.0 1.3E-30 2.9E-35 244.7 33.0 277 90-396 11-288 (293)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 6.7E-30 1.4E-34 236.3 29.7 257 103-384 1-259 (260)
8 KOG4510 Permease of the drug/m 100.0 1.6E-32 3.5E-37 238.6 3.3 294 87-392 34-328 (346)
9 TIGR00817 tpt Tpt phosphate/ph 100.0 4E-27 8.6E-32 222.4 30.8 282 94-397 5-301 (302)
10 TIGR03340 phn_DUF6 phosphonate 100.0 4.5E-27 9.7E-32 219.7 29.8 269 93-386 3-280 (281)
11 TIGR00688 rarD rarD protein. T 100.0 9.3E-27 2E-31 214.7 30.0 243 91-364 2-255 (256)
12 PTZ00343 triose or hexose phos 100.0 2.4E-25 5.2E-30 213.6 35.2 277 91-390 49-349 (350)
13 COG0697 RhaT Permeases of the 99.9 3E-24 6.5E-29 201.2 34.2 279 89-390 5-288 (292)
14 PF06027 DUF914: Eukaryotic pr 99.9 2.4E-24 5.2E-29 201.6 29.4 287 91-393 17-309 (334)
15 COG5006 rhtA Threonine/homoser 99.9 2.7E-23 6E-28 180.2 27.3 275 93-396 14-289 (292)
16 TIGR00776 RhaT RhaT L-rhamnose 99.9 3.4E-22 7.5E-27 186.9 28.8 274 92-390 2-289 (290)
17 COG2962 RarD Predicted permeas 99.9 1.2E-21 2.6E-26 174.7 28.5 274 89-393 5-287 (293)
18 PF08449 UAA: UAA transporter 99.8 1.2E-17 2.7E-22 157.5 31.1 276 107-395 16-303 (303)
19 KOG2765 Predicted membrane pro 99.8 1.1E-18 2.5E-23 159.7 15.1 234 147-394 153-395 (416)
20 COG2510 Predicted membrane pro 99.7 8.5E-16 1.8E-20 119.9 11.7 133 91-224 3-138 (140)
21 KOG1441 Glucose-6-phosphate/ph 99.6 3.5E-15 7.7E-20 138.3 11.6 279 96-397 22-315 (316)
22 COG2510 Predicted membrane pro 99.6 6.6E-15 1.4E-19 114.9 10.5 133 256-389 4-139 (140)
23 KOG1581 UDP-galactose transpor 99.5 4.8E-12 1E-16 113.6 24.9 261 119-393 50-317 (327)
24 KOG1580 UDP-galactose transpor 99.5 2.1E-13 4.6E-18 117.5 15.5 283 95-393 17-317 (337)
25 PF04142 Nuc_sug_transp: Nucle 99.5 1.3E-12 2.8E-17 118.6 20.8 226 149-380 13-244 (244)
26 KOG2766 Predicted membrane pro 99.5 4.1E-15 9E-20 129.5 3.6 278 91-392 22-302 (336)
27 PF00892 EamA: EamA-like trans 99.5 1.2E-13 2.6E-18 112.5 11.1 122 101-224 1-125 (126)
28 KOG1444 Nucleotide-sugar trans 99.5 1.3E-11 2.8E-16 112.3 24.7 282 92-396 13-307 (314)
29 KOG2234 Predicted UDP-galactos 99.5 6.3E-11 1.4E-15 109.4 29.0 286 93-393 17-326 (345)
30 PF06800 Sugar_transport: Suga 99.5 4.2E-11 9E-16 108.4 24.0 249 119-386 11-268 (269)
31 TIGR00950 2A78 Carboxylate/Ami 99.4 1.9E-12 4.1E-17 119.5 15.0 179 41-220 74-259 (260)
32 PRK11689 aromatic amino acid e 99.3 1.3E-11 2.8E-16 116.1 13.7 179 45-227 96-289 (295)
33 PLN00411 nodulin MtN21 family 99.3 1.7E-11 3.6E-16 117.7 13.5 191 36-228 100-331 (358)
34 PF00892 EamA: EamA-like trans 99.3 1.1E-11 2.5E-16 100.7 9.8 122 265-388 1-125 (126)
35 PRK10532 threonine and homoser 99.3 2.8E-10 6E-15 107.0 18.1 136 90-227 147-283 (293)
36 PRK11272 putative DMT superfam 99.3 2.6E-10 5.5E-15 107.2 17.8 181 43-226 99-286 (292)
37 KOG4314 Predicted carbohydrate 99.3 2.8E-11 6.1E-16 101.8 9.8 211 161-392 61-279 (290)
38 PF13536 EmrE: Multidrug resis 99.3 9.3E-11 2E-15 93.9 12.2 104 125-229 2-110 (113)
39 PF05653 Mg_trans_NIPA: Magnes 99.2 8.8E-10 1.9E-14 103.1 19.8 275 87-393 3-296 (300)
40 PRK13499 rhamnose-proton sympo 99.2 2.4E-08 5.2E-13 94.2 29.2 291 87-390 3-342 (345)
41 KOG1443 Predicted integral mem 99.2 2.4E-09 5.1E-14 96.4 19.3 247 119-387 44-313 (349)
42 TIGR03340 phn_DUF6 phosphonate 99.2 8.6E-11 1.9E-15 109.8 9.3 181 42-223 91-281 (281)
43 PRK11453 O-acetylserine/cystei 99.2 7.4E-10 1.6E-14 104.5 14.9 185 42-227 88-289 (299)
44 COG5070 VRG4 Nucleotide-sugar 99.1 2.8E-09 6.1E-14 91.6 16.2 283 96-395 11-302 (309)
45 TIGR00817 tpt Tpt phosphate/ph 99.1 3E-10 6.6E-15 107.3 9.6 190 37-227 88-295 (302)
46 KOG1442 GDP-fucose transporter 99.1 1.8E-10 4E-15 101.8 6.6 255 119-392 60-330 (347)
47 PRK15430 putative chlorampheni 99.0 2.3E-08 5E-13 94.1 15.8 135 252-389 5-145 (296)
48 COG4975 GlcU Putative glucose 99.0 1.9E-10 4.2E-15 100.2 1.4 274 92-389 3-285 (288)
49 KOG3912 Predicted integral mem 99.0 1.8E-07 3.8E-12 83.4 19.9 222 155-388 88-333 (372)
50 PF03151 TPT: Triose-phosphate 98.9 1.6E-08 3.5E-13 85.4 12.7 133 256-388 1-152 (153)
51 COG0697 RhaT Permeases of the 98.9 7.6E-08 1.7E-12 89.9 17.7 173 51-226 107-288 (292)
52 PTZ00343 triose or hexose phos 98.9 1.9E-08 4.1E-13 96.8 13.3 183 42-224 142-347 (350)
53 TIGR00688 rarD rarD protein. T 98.9 4.8E-08 1E-12 90.0 14.9 133 255-389 2-142 (256)
54 KOG1582 UDP-galactose transpor 98.9 8.4E-08 1.8E-12 85.0 15.2 226 152-395 105-338 (367)
55 PF03151 TPT: Triose-phosphate 98.9 1.1E-07 2.5E-12 80.2 15.5 131 92-222 1-150 (153)
56 PRK15051 4-amino-4-deoxy-L-ara 98.8 1.3E-07 2.8E-12 75.0 14.0 70 156-225 40-109 (111)
57 PRK02971 4-amino-4-deoxy-L-ara 98.8 1.6E-07 3.5E-12 76.3 14.1 121 91-227 2-124 (129)
58 TIGR00803 nst UDP-galactose tr 98.8 6E-08 1.3E-12 87.4 12.0 208 178-386 3-221 (222)
59 PRK02971 4-amino-4-deoxy-L-ara 98.8 1.6E-07 3.5E-12 76.4 12.6 122 255-393 2-126 (129)
60 TIGR00776 RhaT RhaT L-rhamnose 98.7 5E-07 1.1E-11 84.7 14.4 128 90-224 151-287 (290)
61 KOG1583 UDP-N-acetylglucosamin 98.6 5.3E-07 1.2E-11 80.3 12.6 263 121-389 34-314 (330)
62 KOG2922 Uncharacterized conser 98.6 2.3E-07 4.9E-12 84.7 9.5 273 87-394 17-311 (335)
63 PF06027 DUF914: Eukaryotic pr 98.6 7E-07 1.5E-11 84.3 11.9 192 35-227 100-307 (334)
64 COG2962 RarD Predicted permeas 98.5 1.9E-06 4E-11 78.0 13.5 136 254-391 6-146 (293)
65 COG5006 rhtA Threonine/homoser 98.5 3.8E-06 8.2E-11 74.1 14.1 134 89-223 146-280 (292)
66 PF13536 EmrE: Multidrug resis 98.5 9.7E-07 2.1E-11 70.5 9.7 78 315-393 32-110 (113)
67 PRK15051 4-amino-4-deoxy-L-ara 98.4 5.5E-06 1.2E-10 65.7 11.9 66 324-389 43-109 (111)
68 PF06379 RhaT: L-rhamnose-prot 98.2 0.0019 4.2E-08 60.3 25.6 289 88-389 4-340 (344)
69 PF06800 Sugar_transport: Suga 98.2 4.9E-05 1.1E-09 69.2 13.6 129 88-221 135-267 (269)
70 PF08449 UAA: UAA transporter 98.1 9.9E-05 2.1E-09 69.7 15.7 136 92-227 155-299 (303)
71 PF04657 DUF606: Protein of un 98.0 0.00024 5.1E-09 58.7 14.2 130 92-222 2-138 (138)
72 PRK10650 multidrug efflux syst 98.0 0.0002 4.4E-09 56.2 12.6 70 154-223 36-106 (109)
73 PRK10452 multidrug efflux syst 98.0 6.7E-05 1.5E-09 59.9 9.4 72 156-227 33-105 (120)
74 PRK09541 emrE multidrug efflux 97.9 0.00011 2.4E-09 57.9 9.7 71 156-226 33-104 (110)
75 COG2076 EmrE Membrane transpor 97.9 0.00011 2.4E-09 56.7 8.9 73 154-226 31-104 (106)
76 PRK10452 multidrug efflux syst 97.9 7.7E-05 1.7E-09 59.6 8.2 68 327-394 40-108 (120)
77 PRK11431 multidrug efflux syst 97.8 0.0002 4.3E-09 55.9 9.8 71 154-224 30-101 (105)
78 PRK13499 rhamnose-proton sympo 97.8 0.00025 5.5E-09 67.2 11.8 132 253-389 5-153 (345)
79 PF10639 UPF0546: Uncharacteri 97.8 0.0001 2.2E-09 58.0 7.1 109 98-223 3-112 (113)
80 COG4975 GlcU Putative glucose 97.7 2E-05 4.2E-10 69.4 2.5 138 256-398 3-145 (288)
81 PRK09541 emrE multidrug efflux 97.7 0.00027 5.8E-09 55.7 8.3 65 328-392 41-106 (110)
82 PF04657 DUF606: Protein of un 97.7 0.00059 1.3E-08 56.3 10.5 129 256-386 2-138 (138)
83 KOG1441 Glucose-6-phosphate/ph 97.6 0.00021 4.6E-09 66.9 8.1 139 89-227 161-309 (316)
84 PF05653 Mg_trans_NIPA: Magnes 97.6 0.00021 4.5E-09 67.1 7.5 124 251-393 3-126 (300)
85 KOG4510 Permease of the drug/m 97.5 8.9E-05 1.9E-09 66.1 3.2 136 90-226 190-326 (346)
86 KOG1581 UDP-galactose transpor 97.4 0.0029 6.3E-08 57.8 12.3 136 89-224 170-312 (327)
87 PF00893 Multi_Drug_Res: Small 97.4 0.0025 5.4E-08 48.8 9.9 61 156-216 32-93 (93)
88 KOG2765 Predicted membrane pro 97.4 0.0023 5E-08 60.1 11.4 142 88-229 244-394 (416)
89 COG2076 EmrE Membrane transpor 97.3 0.0014 3E-08 50.7 7.7 64 328-391 41-105 (106)
90 PRK11431 multidrug efflux syst 97.2 0.0022 4.8E-08 50.0 8.3 64 327-390 39-103 (105)
91 PRK10650 multidrug efflux syst 97.2 0.002 4.3E-08 50.6 7.7 62 327-388 45-107 (109)
92 COG3238 Uncharacterized protei 97.1 0.0089 1.9E-07 49.4 11.2 135 253-389 3-146 (150)
93 TIGR00803 nst UDP-galactose tr 97.1 0.0039 8.5E-08 56.0 10.1 131 89-222 83-221 (222)
94 COG3238 Uncharacterized protei 97.0 0.034 7.4E-07 46.0 13.9 134 90-224 4-145 (150)
95 PF00893 Multi_Drug_Res: Small 96.9 0.0097 2.1E-07 45.5 8.8 53 328-380 40-93 (93)
96 PF07857 DUF1632: CEO family ( 96.9 0.022 4.8E-07 51.8 12.4 180 92-278 1-206 (254)
97 PF04142 Nuc_sug_transp: Nucle 96.8 0.0048 1E-07 56.2 7.6 80 315-394 15-94 (244)
98 PF10639 UPF0546: Uncharacteri 96.7 0.0068 1.5E-07 47.7 6.9 108 262-386 3-111 (113)
99 KOG1580 UDP-galactose transpor 96.5 0.017 3.8E-07 50.8 8.8 136 89-224 170-312 (337)
100 KOG1444 Nucleotide-sugar trans 96.4 0.036 7.7E-07 51.3 10.4 138 90-227 156-302 (314)
101 COG5070 VRG4 Nucleotide-sugar 95.7 0.075 1.6E-06 46.6 8.6 137 89-225 153-296 (309)
102 PF06379 RhaT: L-rhamnose-prot 95.3 0.16 3.4E-06 47.8 9.9 142 252-396 4-160 (344)
103 KOG2922 Uncharacterized conser 95.2 0.0063 1.4E-07 56.2 0.4 127 250-396 16-143 (335)
104 KOG2234 Predicted UDP-galactos 95.1 1.1 2.4E-05 42.4 14.9 137 255-391 15-166 (345)
105 KOG1582 UDP-galactose transpor 93.2 1.1 2.3E-05 40.8 10.2 137 91-227 190-334 (367)
106 KOG1443 Predicted integral mem 92.0 3.9 8.4E-05 38.0 12.3 135 89-223 162-313 (349)
107 PRK02237 hypothetical protein; 91.5 4.2 9E-05 31.5 10.2 47 179-225 58-105 (109)
108 KOG4831 Unnamed protein [Funct 91.1 2.4 5.3E-05 32.6 8.4 110 96-224 8-124 (125)
109 KOG2766 Predicted membrane pro 91.0 0.3 6.5E-06 43.9 4.1 135 86-223 161-297 (336)
110 PRK02237 hypothetical protein; 91.0 1.3 2.9E-05 34.2 7.0 46 347-392 63-108 (109)
111 KOG4314 Predicted carbohydrate 90.5 0.087 1.9E-06 45.2 0.3 67 328-394 64-130 (290)
112 PF02694 UPF0060: Uncharacteri 88.5 3 6.6E-05 32.2 7.3 53 174-226 51-104 (107)
113 PF07857 DUF1632: CEO family ( 87.3 1.2 2.6E-05 40.6 5.3 130 256-392 1-137 (254)
114 PF02694 UPF0060: Uncharacteri 87.1 1.9 4.1E-05 33.3 5.4 46 347-392 61-106 (107)
115 KOG3912 Predicted integral mem 86.5 0.9 2E-05 41.5 4.0 68 323-390 92-159 (372)
116 KOG1583 UDP-N-acetylglucosamin 85.7 8.7 0.00019 35.3 9.7 137 90-226 163-315 (330)
117 COG1742 Uncharacterized conser 85.1 8 0.00017 29.7 7.8 41 186-226 65-105 (109)
118 KOG4831 Unnamed protein [Funct 84.8 1.4 3.1E-05 33.8 3.8 61 327-387 62-123 (125)
119 PF04342 DUF486: Protein of un 84.5 9.6 0.00021 29.4 8.1 53 172-224 54-107 (108)
120 KOG1442 GDP-fucose transporter 84.0 1.4 3.1E-05 40.1 4.1 137 89-225 183-327 (347)
121 COG1742 Uncharacterized conser 81.8 3.3 7.2E-05 31.7 4.6 46 347-392 62-107 (109)
122 TIGR02865 spore_II_E stage II 81.4 43 0.00094 36.0 14.6 45 179-223 10-54 (764)
123 COG3169 Uncharacterized protei 80.4 3.7 8.1E-05 31.1 4.4 32 194-225 84-115 (116)
124 PF04342 DUF486: Protein of un 78.5 13 0.00029 28.7 7.0 30 358-387 77-106 (108)
125 PF05297 Herpes_LMP1: Herpesvi 78.2 0.69 1.5E-05 42.1 0.0 70 155-224 24-96 (381)
126 PF06570 DUF1129: Protein of u 76.6 53 0.0011 28.9 12.6 21 92-112 86-106 (206)
127 COG3247 HdeD Uncharacterized c 76.2 51 0.0011 28.5 16.2 158 201-389 15-177 (185)
128 COG3086 RseC Positive regulato 75.9 3.2 6.9E-05 34.0 3.2 53 338-390 69-123 (150)
129 COG3169 Uncharacterized protei 69.3 9.3 0.0002 29.0 4.1 32 358-389 84-115 (116)
130 PF06123 CreD: Inner membrane 66.0 1.5E+02 0.0031 29.6 12.9 65 191-279 309-375 (430)
131 PF05297 Herpes_LMP1: Herpesvi 63.9 2.3 4.9E-05 38.8 0.0 63 327-389 118-184 (381)
132 PF07168 Ureide_permease: Urei 62.4 1.5 3.2E-05 40.6 -1.5 113 96-210 1-129 (336)
133 PF09656 PGPGW: Putative trans 57.0 28 0.00061 23.4 4.3 44 208-278 4-47 (53)
134 PF04246 RseC_MucC: Positive r 55.9 11 0.00024 30.7 2.7 48 341-388 65-114 (135)
135 PF07168 Ureide_permease: Urei 54.5 4.8 0.0001 37.4 0.4 73 316-389 71-146 (336)
136 PRK11715 inner membrane protei 51.9 2.6E+02 0.0056 27.9 12.5 31 198-228 322-354 (436)
137 PRK13108 prolipoprotein diacyl 49.0 78 0.0017 31.7 7.9 27 369-395 254-280 (460)
138 PRK10862 SoxR reducing system 39.2 34 0.00074 28.7 3.2 22 343-364 74-95 (154)
139 PF06946 Phage_holin_5: Phage 38.9 1.7E+02 0.0036 22.2 6.4 67 321-388 9-79 (93)
140 COG3476 Tryptophan-rich sensor 38.7 2.4E+02 0.0052 23.8 8.2 63 325-388 59-123 (161)
141 PF11023 DUF2614: Protein of u 37.7 1E+02 0.0022 24.2 5.3 25 202-226 5-29 (114)
142 PF04306 DUF456: Protein of un 37.3 2.3E+02 0.0051 23.2 10.0 56 308-366 24-80 (140)
143 PF00909 Ammonium_transp: Ammo 34.8 4.5E+02 0.0097 25.8 16.9 182 192-389 162-366 (399)
144 PRK11715 inner membrane protei 34.1 4.9E+02 0.011 26.0 14.8 51 89-143 304-354 (436)
145 PF06123 CreD: Inner membrane 33.9 4.9E+02 0.011 25.9 15.5 51 89-143 298-348 (430)
146 PF01350 Flavi_NS4A: Flaviviru 33.3 2.8E+02 0.006 22.9 8.7 65 322-391 53-117 (144)
147 TIGR03644 marine_trans_1 proba 32.9 4.9E+02 0.011 25.7 17.2 25 151-175 203-227 (404)
148 COG5522 Predicted integral mem 32.3 2.2E+02 0.0048 25.1 7.0 39 186-224 132-172 (236)
149 PF03729 DUF308: Short repeat 31.9 1.7E+02 0.0037 20.1 7.0 19 211-229 2-20 (72)
150 PF01102 Glycophorin_A: Glycop 31.8 31 0.00067 27.6 1.7 21 375-395 75-95 (122)
151 PF03073 TspO_MBR: TspO/MBR fa 30.6 2.9E+02 0.0062 22.7 7.5 48 321-368 47-94 (148)
152 PF07331 TctB: Tripartite tric 29.5 3E+02 0.0065 22.1 13.3 20 165-184 80-99 (141)
153 COG3086 RseC Positive regulato 29.1 1E+02 0.0022 25.5 4.2 46 173-219 68-113 (150)
154 PRK10209 acid-resistance membr 28.4 3.9E+02 0.0084 23.1 16.0 42 349-390 137-183 (190)
155 PRK11469 hypothetical protein; 28.3 69 0.0015 27.8 3.4 44 344-387 41-85 (188)
156 COG4858 Uncharacterized membra 28.2 4E+02 0.0087 23.1 8.6 87 92-181 101-189 (226)
157 COG2323 Predicted membrane pro 27.9 3.7E+02 0.0081 24.1 8.0 79 121-202 4-82 (224)
158 TIGR02611 conserved hypothetic 26.6 1.5E+02 0.0032 23.7 4.6 43 209-278 29-71 (121)
159 PF11381 DUF3185: Protein of u 26.2 32 0.0007 23.7 0.8 19 209-227 1-19 (59)
160 PF15102 TMEM154: TMEM154 prot 25.6 38 0.00082 28.0 1.2 15 378-392 70-84 (146)
161 PF11139 DUF2910: Protein of u 25.1 4.7E+02 0.01 22.9 12.3 40 185-224 158-210 (214)
162 PF04246 RseC_MucC: Positive r 24.6 94 0.002 25.2 3.5 44 177-221 65-108 (135)
163 PRK10862 SoxR reducing system 22.3 1.3E+02 0.0027 25.3 3.8 24 176-199 71-94 (154)
164 COG3965 Predicted Co/Zn/Cd cat 22.1 6.3E+02 0.014 23.3 12.0 113 91-207 96-215 (314)
165 PF10754 DUF2569: Protein of u 21.9 4.6E+02 0.0099 21.6 7.9 27 252-278 118-144 (149)
166 cd01324 cbb3_Oxidase_CcoQ Cyto 21.9 58 0.0013 21.3 1.3 20 377-396 19-38 (48)
167 TIGR01167 LPXTG_anchor LPXTG-m 21.9 1.1E+02 0.0023 17.9 2.4 13 370-382 11-23 (34)
168 PF11177 DUF2964: Protein of u 21.4 2.9E+02 0.0064 19.2 4.8 49 179-227 10-58 (62)
169 PF10131 PTPS_related: 6-pyruv 21.2 9.7E+02 0.021 25.1 15.7 18 373-390 203-220 (616)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=6.8e-33 Score=264.63 Aligned_cols=305 Identities=14% Similarity=0.124 Sum_probs=229.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCC-CC--cCchhHHHHHHHHHHHHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PI--FGPMHARNLLVLRALVGFL 165 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~ 165 (400)
..+-++.|++.-++++...++.|.+...+++|+.+.++|+.++.++++++.+.+++ +. +..++.+..+.+.++.++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999998889999999999999999888887654332 21 1223444556666666666
Q ss_pred HHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHH------hcCcCcHHHHHHHHHHHHhhhhhhcccccccccc--CCC
Q 015813 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII------LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS--GGL 237 (400)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~------l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~--~~~ 237 (400)
.+.+++++++++++++++++.+++|+++.++++++ +|||+++++++|++++++|+.++..++......+ ++.
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 77789999999999999999999999999999999 6999999999999999999998775432110000 000
Q ss_pred cCCCccc-ccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCc--c----
Q 015813 238 VKPGEAI-SLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--V---- 310 (400)
Q Consensus 238 ~~~~~~~-~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---- 310 (400)
.+-.+.. +......+...|++++++++++||+|+++.|+..++.++.....+++.+++.+...+.....++. .
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWII 250 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccccee
Confidence 0000000 00011122356999999999999999999998766555544545555555554444433333221 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHc
Q 015813 311 LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 390 (400)
Q Consensus 311 ~~~~~~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~ 390 (400)
..+.. +..+++.++++.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|+.|+++..+.
T Consensus 251 ~~~~~-~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 251 HFDIT-LITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred ccchH-HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 12323 33466777777889999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCcc
Q 015813 391 GPEK 394 (400)
Q Consensus 391 ~~~~ 394 (400)
++++
T Consensus 330 ~~~~ 333 (358)
T PLN00411 330 KANE 333 (358)
T ss_pred hhhh
Confidence 5544
No 2
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=1e-32 Score=259.30 Aligned_cols=287 Identities=14% Similarity=0.085 Sum_probs=219.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHH
Q 015813 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFS 169 (400)
Q Consensus 90 ~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (400)
.+++++++.++++||.+.+..|... ++++|+...++|+.++.++++++..+ ++ .+++.++..+.+++.....+.+
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~~ 77 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTVGF--PR--LRQFPKRYLLAGGLLFVSYEIC 77 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHccc--cc--cccccHHHHHHHhHHHHHHHHH
Confidence 4578899999999999999999986 88999999999999999888766421 11 1222334455566666666777
Q ss_pred HHHHHh----ccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccc
Q 015813 170 FVYSIQ----RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS 245 (400)
Q Consensus 170 ~~~al~----~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~ 245 (400)
++.+++ .+++.+++++.++.|+++.+++++++|||+++++++|++++++|++++..++..... ...
T Consensus 78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~----------~~~ 147 (295)
T PRK11689 78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSL----------AEL 147 (295)
T ss_pred HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchh----------hhh
Confidence 777775 468888999999999999999999999999999999999999999999866421100 000
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCc-cCCCHHHHHHHHHHH
Q 015813 246 LNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-VLPSFYSFLLMLVLS 324 (400)
Q Consensus 246 ~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g 324 (400)
++ ....+..|++++++++++||+|.++.||..++.+ +... .+...+..+ .+.....+++ ...+...|..+++.+
T Consensus 148 ~~-~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~--~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~ 222 (295)
T PRK11689 148 IN-NIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITL--FFILTALAL-WIKYFLSPQPAMVFSLPAIIKLLLAA 222 (295)
T ss_pred hh-ccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhH--HHHHHHHHH-HHHHHHhcCccccCCHHHHHHHHHHH
Confidence 00 0012356999999999999999999999765433 3332 222222222 2222222222 235677888888888
Q ss_pred HHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCcccc
Q 015813 325 ILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEM 396 (400)
Q Consensus 325 v~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 396 (400)
+.+.++|.+|++++|+.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|+++...+++++++
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~~~ 294 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRKRR 294 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHhcc
Confidence 767999999999999999999999999999999999999999999999999999999999888877655443
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=2e-31 Score=250.24 Aligned_cols=276 Identities=16% Similarity=0.097 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHH-HHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALV-GFLSLFSF 170 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 170 (400)
-.+..++..++||.+.++.|... ++++|.++.++|+.++.++++++...++++.. +++.+......+.. ...++.++
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 86 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGHPLP-TLRQWLNAALIGLLLLAVGNGMV 86 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668888999999999999886 79999999999999999888887766554432 33444444444444 45678888
Q ss_pred HHHH-hccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccC
Q 015813 171 VYSI-QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVR 249 (400)
Q Consensus 171 ~~al-~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (400)
+++. ++++++.++++.++.|+++.+++.+ +|||+++++++|++++++|+.++..++..
T Consensus 87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~-------------------- 145 (292)
T PRK11272 87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL-------------------- 145 (292)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc--------------------
Confidence 9999 9999999999999999999999985 79999999999999999999988643211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcC-cc-CCCHHHHHHHHHHHHHH
Q 015813 250 GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE-FV-LPSFYSFLLMLVLSILA 327 (400)
Q Consensus 250 ~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~gv~~ 327 (400)
.....|++++++++++||.+.+..|+..+ .++. ....+....+.+...+.....+. +. .++...|..++++++++
T Consensus 146 -~~~~~G~l~~l~a~~~~a~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~ 222 (292)
T PRK11272 146 -SGNPWGAILILIASASWAFGSVWSSRLPL-PVGM-MAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFG 222 (292)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHhcCC-Ccch-HHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHH
Confidence 12347999999999999999999999654 3333 33445555555555444433332 22 24678899999999886
Q ss_pred -HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCc
Q 015813 328 -FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 393 (400)
Q Consensus 328 -~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~ 393 (400)
.+++.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++++.|+++..+++++
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999999999999999999999998876554
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=5.5e-31 Score=248.13 Aligned_cols=276 Identities=16% Similarity=0.181 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHH-HHHHHHHH
Q 015813 93 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSFV 171 (400)
Q Consensus 93 ~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 171 (400)
.++.++++++||...++.|... ++++|.++.++|+.++.+.++++..+++. .++.....++.. ...+.+++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~ 77 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVARPKV-------PLNLLLGYGLTISFGQFAFLF 77 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999987 78999999999999987666555432111 122233334433 34455778
Q ss_pred HHHhc-cchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCC
Q 015813 172 YSIQR-LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRG 250 (400)
Q Consensus 172 ~al~~-~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (400)
.++++ .|+++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++... .
T Consensus 78 ~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~-------------------~ 138 (299)
T PRK11453 78 CAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG-------------------Q 138 (299)
T ss_pred HHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC-------------------c
Confidence 88887 689999999999999999999999999999999999999999999988543110 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCh--HHHHHHHHHHHHHHHHHHHHhhcC-------ccCCCHHHHHHHH
Q 015813 251 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQP--LVTVFSFGILASPAAGICLFFFEE-------FVLPSFYSFLLML 321 (400)
Q Consensus 251 ~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~ 321 (400)
..+..|++++++++++||.+.++.|+..++.+.+ .....+..+.+.+.........++ +...+...|..++
T Consensus 139 ~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (299)
T PRK11453 139 HVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLM 218 (299)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHH
Confidence 2245799999999999999999999975433222 222233333333222222222221 2245678899999
Q ss_pred HHHHHH-HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCccc
Q 015813 322 VLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 395 (400)
Q Consensus 322 ~~gv~~-~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 395 (400)
++|+++ .++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|+.|+++..+.++.|+
T Consensus 219 ~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~~~~ 293 (299)
T PRK11453 219 YLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLRWRK 293 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchhhhc
Confidence 999886 89999999999999999999999999999999999999999999999999999999988876655333
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=100.00 E-value=4.7e-31 Score=248.13 Aligned_cols=275 Identities=14% Similarity=0.089 Sum_probs=209.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCc-----CchhHHHHHHHHHHH
Q 015813 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIF-----GPMHARNLLVLRALV 162 (400)
Q Consensus 88 ~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 162 (400)
++.+|.+++++++++|+...+..|.. .+++|.++.++|+.++.+++.++...++++.. +.++.+.....+++.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL 82 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 45679999999999999999999984 57999999999999998877666544332111 112223334566777
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCc
Q 015813 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGE 242 (400)
Q Consensus 163 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~ 242 (400)
.+..+.++++|++++|+++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++.
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------------- 148 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------------- 148 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC--------------
Confidence 888999999999999999999999999999999999999999999999999999999999875421
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHhhcCcc--CCCH-HHHH
Q 015813 243 AISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQ-PLVTVFSFGILASPAAGICLFFFEEFV--LPSF-YSFL 318 (400)
Q Consensus 243 ~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~ 318 (400)
.. .+++++++++||+|.+..|+..++... ......+....+..... ........ ..++ ..+.
T Consensus 149 --------~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 214 (296)
T PRK15430 149 --------SL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLF--AIADSSTSHMGQNPMSLNL 214 (296)
T ss_pred --------Cc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH--HHccCCcccccCCcHHHHH
Confidence 00 146788999999999999986432111 11112222222222211 11111111 1122 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCC
Q 015813 319 LMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 319 ~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
.++..|+.+.++|.+|++++++.++++++++.+++|+++.+++++++||++++.+++|+++|+.|+.+...+..
T Consensus 215 ~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 215 LLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666789999999999999999999999999999999999999999999999999999988888776543
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=1.3e-30 Score=244.74 Aligned_cols=277 Identities=13% Similarity=0.049 Sum_probs=218.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHH
Q 015813 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFS 169 (400)
Q Consensus 90 ~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (400)
..|+.+++++.++|+....+.|... +++||.++.++|++++.++++++.++++++ .+++.++..+..++.....+.+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 87 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAIFKPWRLR--FAKEQRLPLLFYGVSLGGMNYL 87 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHhHHhcc--CCHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999987 679999999999999998888776543322 2334445566667777888899
Q ss_pred HHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccC
Q 015813 170 FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVR 249 (400)
Q Consensus 170 ~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (400)
++++++++|++.++++.++.|+++.+++ +|++++ ..++.++++|+.++..++...
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~------------------- 142 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDV------------------- 142 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCc-------------------
Confidence 9999999999999999999999998886 366554 456778899999887543211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHH-H
Q 015813 250 GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-F 328 (400)
Q Consensus 250 ~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~-~ 328 (400)
+..+..|++++++++++||.|.+..|+..++.+ +.... +..+.+.++..+.....+.....+...|..++++|+++ .
T Consensus 143 ~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~ 220 (293)
T PRK10532 143 SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTA 220 (293)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHH
Confidence 112457999999999999999999999765433 44433 34444444444433333222234566777778999886 9
Q ss_pred HHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCcccc
Q 015813 329 FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEM 396 (400)
Q Consensus 329 ~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 396 (400)
++|.+|++++++.++++++++.+++|+++.+++++++||++++.+++|+++|+.|+++..++.+|+.|
T Consensus 221 ~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 221 LPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999887766444
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.98 E-value=6.7e-30 Score=236.27 Aligned_cols=257 Identities=21% Similarity=0.239 Sum_probs=212.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 015813 103 YFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA 182 (400)
Q Consensus 103 ~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a 182 (400)
||.+.+..|...++..|+.+..+.|.+.+.+++.+...++ ..++++.+....+++...+.+.++++|+++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~ 76 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEA 76 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 7888899999765678999999999999988887766554 233455566677777788999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHH
Q 015813 183 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF 262 (400)
Q Consensus 183 ~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~ 262 (400)
+++.++.|+++.+++++++|||+++++++|++++++|+.++..++.. ..+..|++++++
T Consensus 77 ~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~---------------------~~~~~G~~~~l~ 135 (260)
T TIGR00950 77 ALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL---------------------SINPAGLLLGLG 135 (260)
T ss_pred HHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc---------------------cccHHHHHHHHH
Confidence 99999999999999999999999999999999999999998754311 234689999999
Q ss_pred HHHHHHHHHHHHHhhccCCCChH-HHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Q 015813 263 SSITGGISYCLIKAGANASDQPL-VTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-FFAEVLLARGLQL 340 (400)
Q Consensus 263 aa~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~-~~~~~~~~~al~~ 340 (400)
++++|+.+.+..|+..++.++.. ....+....+.+...+.....++....+...|..+++.++++ .++|.+|++++++
T Consensus 136 a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 215 (260)
T TIGR00950 136 SGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTL 215 (260)
T ss_pred HHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999765433222 222234555555555444444333344677888889999886 8999999999999
Q ss_pred cCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHH
Q 015813 341 EKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSV 384 (400)
Q Consensus 341 ~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~ 384 (400)
.++++++.+.+++|+++.+++++++||++++.+++|+++++.|+
T Consensus 216 ~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 216 VDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999886
No 8
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.97 E-value=1.6e-32 Score=238.61 Aligned_cols=294 Identities=22% Similarity=0.338 Sum_probs=248.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHH
Q 015813 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLS 166 (400)
Q Consensus 87 ~~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (400)
..+++|.++..++.++-.. .++.+.. -..+|.+..-.|++.-.+..++....++.....+...+++++++|+.++.+
T Consensus 34 d~p~~gl~l~~vs~ff~~~-~vv~t~~--~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tg 110 (346)
T KOG4510|consen 34 DKPNLGLLLLTVSYFFNSC-MVVSTKV--LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTG 110 (346)
T ss_pred CCCccCceehhhHHHHhhH-HHhhhhh--hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhH
Confidence 3467888888888444444 4444443 368999999999777777776665555555556666678899999999999
Q ss_pred HHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCccccc
Q 015813 167 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 246 (400)
Q Consensus 167 ~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (400)
..+.||+++|.+.++|++++++.|+|+.++++.++|||.++.+.++..+.+.||+++.+|.+.+.. +.++.++
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~-------~t~g~~~ 183 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGD-------TTEGEDS 183 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCC-------Ccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999876543 1122111
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCC-CHHHHHHHHHHHH
Q 015813 247 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSI 325 (400)
Q Consensus 247 ~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gv 325 (400)
.....+.+|...++.+++..|..+++.|+..| ..+....+.|+.+.+++...+.....+.++.| ...+|...+-+|+
T Consensus 184 -s~~~~~~~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGv 261 (346)
T KOG4510|consen 184 -SQVEYDIPGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGV 261 (346)
T ss_pred -ccccccCCchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehh
Confidence 12245667899999999999999999999876 46677788899999999988888777788877 6789999999999
Q ss_pred HHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCC
Q 015813 326 LAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 326 ~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
+++++|.+.+.++|+..|.++++..+.+.+++++|.++++++.|+++++.|+++|+.+.++...++-
T Consensus 262 fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 262 FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888876653
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.96 E-value=4e-27 Score=222.41 Aligned_cols=282 Identities=12% Similarity=0.037 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh-hCCCCcCchhHHHHHHHHHHHHHHHHHHHHH
Q 015813 94 MCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRR-SGQPIFGPMHARNLLVLRALVGFLSLFSFVY 172 (400)
Q Consensus 94 ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (400)
.+.+...++-...++..|.+..+-.+|..+.++|+.++.+.+.+.... .+++...+++.++.++..+++.+..+.+.++
T Consensus 5 ~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 84 (302)
T TIGR00817 5 LLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNV 84 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666677778899987333779999999999988776555221 1222223455677777778888888999999
Q ss_pred HHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCch
Q 015813 173 SIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSD 252 (400)
Q Consensus 173 al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (400)
++++++++.++++.++.|+++.+++++++|||+++++++|++++++|+.+....+. ..
T Consensus 85 ~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~----------------------~~ 142 (302)
T TIGR00817 85 SLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTEL----------------------SF 142 (302)
T ss_pred HHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcc----------------------cc
Confidence 99999999999999999999999999999999999999999999999987542211 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHHHHHHhhcCccCC--CH----------HHHHH
Q 015813 253 HMLAVLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEEFVLP--SF----------YSFLL 319 (400)
Q Consensus 253 ~~~G~l~~l~aa~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~ 319 (400)
+..|++++++++++||++.++.|+..++ +.++.....++...+.+...+.....++.+.. +. ..+..
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 4579999999999999999999997651 23456677787777777666665544332211 00 11111
Q ss_pred HHHHHHHH-HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCccccc
Q 015813 320 MLVLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 397 (400)
Q Consensus 320 l~~~gv~~-~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~ 397 (400)
.+..+..+ ...+.++++++++.+|++.++..+++|+++++++++++||++++.+++|+++++.|+++..+.+.+|++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 22222222 3333566789999999999999999999999999999999999999999999999999999877666554
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.96 E-value=4.5e-27 Score=219.66 Aligned_cols=269 Identities=14% Similarity=0.068 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh--CCC-CcCchhHHHHHHHHHHHHHHHHHH
Q 015813 93 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS--GQP-IFGPMHARNLLVLRALVGFLSLFS 169 (400)
Q Consensus 93 ~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 169 (400)
.++.+.++++|+..++..|... ++-++. .+++.....+++.++...+ +++ ...+++++...+.+++.....+.+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHA-DKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG 79 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999654 444443 4777777776776665543 222 222345566777788888899999
Q ss_pred HHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccC
Q 015813 170 FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVR 249 (400)
Q Consensus 170 ~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (400)
+++++++.+++.++++.++.|+++.+++++++|||+++++++|+++++.|+.++..++..
T Consensus 80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-------------------- 139 (281)
T TIGR03340 80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-------------------- 139 (281)
T ss_pred HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc--------------------
Confidence 999999999999999999999999999999999999999999999999999988765311
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHH---HHHHH-HHHHHHHHHhhcCcc-CCCHHHHHHHHHHH
Q 015813 250 GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFS---FGILA-SPAAGICLFFFEEFV-LPSFYSFLLMLVLS 324 (400)
Q Consensus 250 ~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g 324 (400)
..+..|+.++++++++|++|.+..|+..++.++......+ ..+.. .+.... ....+... .+....+..+++.+
T Consensus 140 -~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 217 (281)
T TIGR03340 140 -QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLL-YLKRHGRSMFPYARQILPSATLG 217 (281)
T ss_pred -ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHH-HHHHhccchhhhHHHHHHHHHHH
Confidence 1123688899999999999999998854322211111111 11111 111111 11111111 12223444555555
Q ss_pred HH-HHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHH
Q 015813 325 IL-AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 386 (400)
Q Consensus 325 v~-~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~ 386 (400)
.+ +.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++++.|+++
T Consensus 218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 44 589999999999999999999999999999999999999999999999999999999875
No 11
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.96 E-value=9.3e-27 Score=214.71 Aligned_cols=243 Identities=15% Similarity=0.104 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC-----C---cCchhHHHHHHHHHHH
Q 015813 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-----I---FGPMHARNLLVLRALV 162 (400)
Q Consensus 91 ~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~ 162 (400)
+|.+++++++++||...++.|.+ .+++|.++.++|++++.+++.++...++++ . ..+++++.....+++.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~--~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL--KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 58999999999999999999983 469999999999999988877665332211 0 1122234456777888
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCc
Q 015813 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGE 242 (400)
Q Consensus 163 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~ 242 (400)
...++.++++|++++++++++++.++.|+++.+++++++|||++++++++++++++|+.++..++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------------- 145 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-------------- 145 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC--------------
Confidence 889999999999999999999999999999999999999999999999999999999998875421
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCc--cC-CCHHHHHH
Q 015813 243 AISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--VL-PSFYSFLL 319 (400)
Q Consensus 243 ~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~ 319 (400)
... +++++++++||.|.+..|+..+ .+.. ..... .....+............ .. +...+|.+
T Consensus 146 --------~~~----~~~l~aa~~~a~~~i~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (256)
T TIGR00688 146 --------SLP----WEALVLAFSFTAYGLIRKALKN-TDLA-GFCLE-TLSLMPVAIYYLLQTDFATVQQTNPFPIWLL 210 (256)
T ss_pred --------Cch----HHHHHHHHHHHHHHHHHhhcCC-CCcc-hHHHH-HHHHHHHHHHHHHHhccCcccccCchhHHHH
Confidence 001 3578899999999999999653 3322 22211 122222222111111111 11 22247888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHH
Q 015813 320 MLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGL 364 (400)
Q Consensus 320 l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~ 364 (400)
+++.|+++.++|.++++++|+.++++++++.|++|+++.+++.++
T Consensus 211 l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 211 LVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 889998889999999999999999999999999999999999765
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=2.4e-25 Score=213.55 Aligned_cols=277 Identities=12% Similarity=0.090 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHh-hCC-CCcC-chhHHHHHHHHHHHHHHH
Q 015813 91 SGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRR-SGQ-PIFG-PMHARNLLVLRALVGFLS 166 (400)
Q Consensus 91 ~G~ll~l~a~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~~~~~-~~~-~~~~-~~~~~~~~~~~~~~~~~~ 166 (400)
+-.++.+.+..+-.......|.+. +.+| |..+.++|++++.+++.+.... .++ ++.. +++.++.++..++++...
T Consensus 49 ~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~ 127 (350)
T PTZ00343 49 KLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFV 127 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 455677777888888899999987 7789 9999999999998765544322 111 1121 344567777888888877
Q ss_pred HHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCccccc
Q 015813 167 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 246 (400)
Q Consensus 167 ~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (400)
+...+.++++++++.++++..+.|+++++++++++|||++++++++++++++|+.+....+.
T Consensus 128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~------------------ 189 (350)
T PTZ00343 128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL------------------ 189 (350)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc------------------
Confidence 77788999999999999999999999999999999999999999999999999999875331
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCC------ChHHHHHHHHHHHHHHHHHHHHhhcCcc----------
Q 015813 247 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASD------QPLVTVFSFGILASPAAGICLFFFEEFV---------- 310 (400)
Q Consensus 247 ~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 310 (400)
..++.|+++++++++++|++.++.|+..++.+ +......+..+.+.++.++.....+...
T Consensus 190 ----~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~ 265 (350)
T PTZ00343 190 ----HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTA 265 (350)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 22568999999999999999999999775432 2332333345666666555544333211
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH----HhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHH
Q 015813 311 LPSFYSFLLMLVLSILAFFAEVLLAR----GLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 386 (400)
Q Consensus 311 ~~~~~~~~~l~~~gv~~~~~~~~~~~----al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~ 386 (400)
..+...+..+++..+++++.+.+++. ++++.+|.+.++..+++|+++++++++++||++++.+++|+++++.|+++
T Consensus 266 ~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 266 NMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 01111223334444456888888884 99999999999999999999999999999999999999999999999998
Q ss_pred HHHc
Q 015813 387 TMYI 390 (400)
Q Consensus 387 ~~~~ 390 (400)
..+.
T Consensus 346 Ys~~ 349 (350)
T PTZ00343 346 YSLF 349 (350)
T ss_pred Hhhc
Confidence 8754
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.95 E-value=3e-24 Score=201.24 Aligned_cols=279 Identities=20% Similarity=0.209 Sum_probs=222.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCC-CCcCchhHHHHHHHHHHHHHHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSL 167 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 167 (400)
...+..+.+...+.|+......|.......++....+.|...+.+...+...+++. +....++.++..+.+++.....+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 45678889999999999999999986233778888888999998885444444321 22222224567777888888999
Q ss_pred HHHHHHHhccchhhHHHHHhhHHHHHHHHHH-HHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCccccc
Q 015813 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAAR-IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 246 (400)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~-~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (400)
.+++.++++++++.++++.++.|+++.++++ +++|||+++++++++++++.|+.++..++.....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~-------------- 150 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI-------------- 150 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh--------------
Confidence 9999999999999999999999999999997 6679999999999999999999999988744211
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHH-HHHHHHHHHHHHHHHhhcCc-cCCCHHHHHHHHHHH
Q 015813 247 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVF-SFGILASPAAGICLFFFEEF-VLPSFYSFLLMLVLS 324 (400)
Q Consensus 247 ~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g 324 (400)
. ...|+++++++++++|++.+..|+.. ..+...... +... .... ........+. ...+...|..+.+.|
T Consensus 151 ----~-~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 221 (292)
T COG0697 151 ----L-SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLL-LALL-LLLLFFLSGFGAPILSRAWLLLLYLG 221 (292)
T ss_pred ----H-HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHH-HHHH-HHHHHHhccccccCCHHHHHHHHHHH
Confidence 1 56899999999999999999999876 233333333 2322 1111 1111112222 245677899999999
Q ss_pred HHH-HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHc
Q 015813 325 ILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 390 (400)
Q Consensus 325 v~~-~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~ 390 (400)
+++ .+++.++++++++.++.+++.+.+++|+++.++++++++|+++..+++|+.+++.|+.+...+
T Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 222 VFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 887 689999999999999999999999999999999999999999999999999999999998877
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.94 E-value=2.4e-24 Score=201.62 Aligned_cols=287 Identities=15% Similarity=0.139 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcC--chhHHHHHHHHHHHHHHHHH
Q 015813 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG--PMHARNLLVLRALVGFLSLF 168 (400)
Q Consensus 91 ~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 168 (400)
.|.++.++-+..-.++..+.+. .-+.|.+|..+...++..+.......+++++.+. .++.++..++.+++...+++
T Consensus 17 lgQ~lsl~~~~t~~~s~~l~~~--~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~ 94 (334)
T PF06027_consen 17 LGQVLSLCITGTGTFSSLLANK--GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANY 94 (334)
T ss_pred HHHHHHHHHHhHHHHHHHHHhc--CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHH
Confidence 4666666666666666666555 3578889998888877776655444554432221 23344556666899999999
Q ss_pred HHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCccccccc
Q 015813 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNV 248 (400)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (400)
+.+.|++|++.+.++++..+..+++++++++++|||+++.|++|++++++|+.++...|....+ ++.
T Consensus 95 ~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~-------------~~~ 161 (334)
T PF06027_consen 95 LVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGS-------------DSS 161 (334)
T ss_pred HHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccc-------------cCC
Confidence 9999999999999999999999999999999999999999999999999999999887754311 112
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcC--cc--CCCHHHHHHHHHHH
Q 015813 249 RGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE--FV--LPSFYSFLLMLVLS 324 (400)
Q Consensus 249 ~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~~g 324 (400)
.+++...|++++++++++||+++++.++..|+. +........++.+.++..+.....+. +. ..+...+.+++..+
T Consensus 162 ~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~ 240 (334)
T PF06027_consen 162 SGSNPILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYA 240 (334)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHH
Confidence 345678999999999999999999999988754 45566666777777776665554431 11 12445566666666
Q ss_pred HHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCc
Q 015813 325 ILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 393 (400)
Q Consensus 325 v~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~ 393 (400)
++.++-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.++|++|.++.+..+++
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 666889999999999999999999999999999999999999999999999999999999998876543
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.93 E-value=2.7e-23 Score=180.15 Aligned_cols=275 Identities=13% Similarity=0.064 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHHH
Q 015813 93 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVY 172 (400)
Q Consensus 93 ~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (400)
++.++.+.+.--....+.|.++ +..++..++.+|..++.++++++++..+++ ..++.+..+..-|++....|.+||.
T Consensus 14 ~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l~RPwr~r--~~~~~~~~~~~yGvsLg~MNl~FY~ 90 (292)
T COG5006 14 ILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLALFRPWRRR--LSKPQRLALLAYGVSLGGMNLLFYL 90 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHHhhHHHhc--cChhhhHHHHHHHHHHHHHHHHHHH
Confidence 5667777777778888899987 899999999999999999888876644332 3355677788889999999999999
Q ss_pred HHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCch
Q 015813 173 SIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSD 252 (400)
Q Consensus 173 al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (400)
+++++|.+.+..+.++.|+.+.+++ .-+.++.+.+.+++.|+.++.-.+.. ....
T Consensus 91 si~riPlGiAVAiEF~GPL~vA~~~------sRr~~d~vwvaLAvlGi~lL~p~~~~-------------------~~~l 145 (292)
T COG5006 91 SIERIPLGIAVAIEFTGPLAVALLS------SRRLRDFVWVALAVLGIWLLLPLGQS-------------------VWSL 145 (292)
T ss_pred HHHhccchhhhhhhhccHHHHHHHh------ccchhhHHHHHHHHHHHHhheeccCC-------------------cCcC
Confidence 9999999999999999999988876 34567788888899999887644422 1245
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHH-HHHH
Q 015813 253 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-FFAE 331 (400)
Q Consensus 253 ~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~-~~~~ 331 (400)
+..|..+++.++.||+.|.+..||..+ .++........+..+.++...+..........++.-...-+..++++ .+.|
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence 679999999999999999999999774 45555555555566665555555444444455677777778888997 9999
Q ss_pred HHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCcccc
Q 015813 332 VLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEM 396 (400)
Q Consensus 332 ~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 396 (400)
.+-..++++.+....+.++.+||.++.+.|++++||++|+.|++|+.+|+.+..-..+..+|+.+
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~~ 289 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPAV 289 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999998877666555544
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.92 E-value=3.4e-22 Score=186.91 Aligned_cols=274 Identities=14% Similarity=0.053 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (400)
+++++++++++||...+..|... +.++.++. |..++.+++..+....+.+.+..++.+...++.|+....++.+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~ 77 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQF 77 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHH
Confidence 67899999999999999999853 68887775 677777666554433332223335566667788888999999999
Q ss_pred HHHhccchhhHHHHHh-hHHHHHHHHHHHHhcCcCcHHH----HHHHHHHHHhhhhhhccccccccccCCCcCCCccccc
Q 015813 172 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAE----IGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 246 (400)
Q Consensus 172 ~al~~~~~~~a~~l~~-~~P~~~~ll~~~~l~e~~~~~~----~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (400)
.++++++.+.+.++.. +.++++.+.+.+++|||.++++ ++|++++++|++++...+... ..++
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~------------~~~~ 145 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS------------AGIK 145 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc------------cccc
Confidence 9999999999999988 8899999999999999999999 999999999999886553211 0000
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHH----HHHHHHHHHHHhhcCccCCCHHHHHHHHH
Q 015813 247 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGI----LASPAAGICLFFFEEFVLPSFYSFLLMLV 322 (400)
Q Consensus 247 ~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (400)
+ . .....|++++++++++|+.|.+..|+.. .+ +....+.+.. .+.++.... . ...+...+.+.....
T Consensus 146 ~-~-~~~~~Gi~~~l~sg~~y~~~~~~~~~~~--~~-~~~~~~~~~~g~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~ 216 (290)
T TIGR00776 146 S-E-FNFKKGILLLLMSTIGYLVYVVVAKAFG--VD-GLSVLLPQAIGMVIGGIIFNLGH---I-LAKPLKKYAILLNIL 216 (290)
T ss_pred c-c-cchhhHHHHHHHHHHHHHHHHHHHHHcC--CC-cceehhHHHHHHHHHHHHHHHHH---h-cccchHHHHHHHHHH
Confidence 0 0 1235799999999999999999999852 23 3333333332 222222211 0 012223333333344
Q ss_pred HHHHHHHHHHHHHHHhc-ccCccchhhhHhhHHHHHHHHHHHHhcccCchhhh----hhhHHHHHHHHHHHHc
Q 015813 323 LSILAFFAEVLLARGLQ-LEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRL----VGCVLILVSVFYTMYI 390 (400)
Q Consensus 323 ~gv~~~~~~~~~~~al~-~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~----~G~~li~~g~~~~~~~ 390 (400)
.|++..+++.+|..+.+ +.++++++++.+.+|+.+.+++++++||..++.++ +|+++++.|+.+....
T Consensus 217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 88888999999999999 99999999999999999999999999999999999 9999999999887653
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=174.74 Aligned_cols=274 Identities=19% Similarity=0.176 Sum_probs=225.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC-----cCchhHHHHHHHHHHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-----FGPMHARNLLVLRALVG 163 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 163 (400)
..+|+++.+.+.+.||......|.+ +..++.++...|.+.+.++++.+....+++. .++++......+.+...
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4469999999999999999999995 6899999999999999887766654333221 22334455666777888
Q ss_pred HHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcc
Q 015813 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEA 243 (400)
Q Consensus 164 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~ 243 (400)
...+..|.+|.++-..-++++=.++.|++.++++.+++|||+++.|+++++++.+||........
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g--------------- 147 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG--------------- 147 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC---------------
Confidence 88899999999999999999999999999999999999999999999999999999998775432
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCcc---C-CCHHHHHH
Q 015813 244 ISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFV---L-PSFYSFLL 319 (400)
Q Consensus 244 ~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 319 (400)
+-.+ .++.=+++|++|..+-|+. + .+.......-++...+...+.....++.. . .+...|..
T Consensus 148 -------~lpw----val~la~sf~~Ygl~RK~~-~--v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~L 213 (293)
T COG2962 148 -------SLPW----VALALALSFGLYGLLRKKL-K--VDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLL 213 (293)
T ss_pred -------CCcH----HHHHHHHHHHHHHHHHHhc-C--CchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHH
Confidence 1122 2345577899999887774 3 34556666666777777776666554333 1 35677888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCc
Q 015813 320 MLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 393 (400)
Q Consensus 320 l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~ 393 (400)
++..|+++.++..++..+-|+.+-+..+.++|.+|..-.+++++++||+++..+++..++|-.|..+.....-+
T Consensus 214 Lv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~ 287 (293)
T COG2962 214 LVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLY 287 (293)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876543
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.83 E-value=1.2e-17 Score=157.55 Aligned_cols=276 Identities=15% Similarity=0.157 Sum_probs=220.0
Q ss_pred HHHHHHhh-cCCCC--HHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHH
Q 015813 107 QVISDVFM-VQSIP--LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQAT 183 (400)
Q Consensus 107 ~~~~k~~~-~~~~~--~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~ 183 (400)
.+....+. .+... |..+++..+....+...+.....+.+ ..++..++.....++....+..+.+.+++++|...-.
T Consensus 16 g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~ 94 (303)
T PF08449_consen 16 GILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQI 94 (303)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 34555443 23334 88899999998888777665555422 2233445666777899999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHHH
Q 015813 184 VLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFS 263 (400)
Q Consensus 184 ~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~a 263 (400)
++....|+.+++++.+++|+|++++|++++++..+|+.+....+..... +.+........|+++.+++
T Consensus 95 ~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~------------~~~~~~~~~~~G~~ll~~s 162 (303)
T PF08449_consen 95 VFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS------------SSNSSSFSSALGIILLLLS 162 (303)
T ss_pred HHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc------------ccccccccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999998877643211 1111111223499999999
Q ss_pred HHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHh--hcCccC------CCHHHHHHHHHHHHHHHHHHHHH
Q 015813 264 SITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFF--FEEFVL------PSFYSFLLMLVLSILAFFAEVLL 334 (400)
Q Consensus 264 a~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~l~~~gv~~~~~~~~~ 334 (400)
.++.|+..++.++..+ ...++...+++....+.+...+.... .+++.. ..+..+..++...+++.+++.+.
T Consensus 163 l~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i 242 (303)
T PF08449_consen 163 LLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFI 242 (303)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998664 44567788899999988888777766 333221 23456667777778888999999
Q ss_pred HHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCccc
Q 015813 335 ARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 395 (400)
Q Consensus 335 ~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 395 (400)
++..++.++...+++..+.-+++++++++++++++++.+++|.++++.|..+..+.++||+
T Consensus 243 ~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 243 FYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999999999999999998877764
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.80 E-value=1.1e-18 Score=159.69 Aligned_cols=234 Identities=17% Similarity=0.190 Sum_probs=194.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcc
Q 015813 147 FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (400)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 226 (400)
+..++..+..+..+...+.+++.++.|+.+++++..+++..++-+|+.+++.++.+||+++.+++++++++.|++++...
T Consensus 153 ~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~ 232 (416)
T KOG2765|consen 153 LTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG 232 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence 34456677778888899999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccccccccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHH--
Q 015813 227 ILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLF-- 304 (400)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 304 (400)
+..+ +++........|+++++++|+.||+|.++.||...+++.-..+-.+++.+|+.-+++..+
T Consensus 233 ~s~~--------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l 298 (416)
T KOG2765|consen 233 DSKQ--------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPL 298 (416)
T ss_pred cccc--------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHH
Confidence 6432 222234567899999999999999999999986654433444445555555544444332
Q ss_pred ------hhcCccCCCHHHHHHHHHHHHHH-HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhh
Q 015813 305 ------FFEEFVLPSFYSFLLMLVLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGC 377 (400)
Q Consensus 305 ------~~~~~~~~~~~~~~~l~~~gv~~-~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~ 377 (400)
..+.+..|+..+...++..++++ +++-++|.+|+-..++..++.-+.++...+++.+.++-+..+++.+++|.
T Consensus 299 ~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGs 378 (416)
T KOG2765|consen 299 IILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGS 378 (416)
T ss_pred HHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHH
Confidence 12456677888888888888776 99999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHHHHcCCcc
Q 015813 378 VLILVSVFYTMYIGPEK 394 (400)
Q Consensus 378 ~li~~g~~~~~~~~~~~ 394 (400)
..|+.|.+.++...+..
T Consensus 379 i~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 379 IPIFVGFVIVNISSENS 395 (416)
T ss_pred HHHHHHHhheecccccc
Confidence 99999999998876543
No 20
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.67 E-value=8.5e-16 Score=119.89 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcC---chhHHHHHHHHHHHHHHHH
Q 015813 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG---PMHARNLLVLRALVGFLSL 167 (400)
Q Consensus 91 ~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 167 (400)
...++++++++++++..++.|.-. +++||...++.|.....+++..++...++.... .++.+..+.+.|+....++
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence 357899999999999999999976 899999999999999999999998888876554 5677788999999999999
Q ss_pred HHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhh
Q 015813 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
.+||+|++.-.++.+.++..++|+++.+++++++|||++..+++|++++.+|++++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999999998875
No 21
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.61 E-value=3.5e-15 Score=138.28 Aligned_cols=279 Identities=12% Similarity=0.041 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC--cCchhHHHHHHHHHHHHHHHHHHHH
Q 015813 96 MALSSTIYFFMQVISDVFMV--QSIPLFETVFMRCTVTLILSYLWLRRSGQPI--FGPMHARNLLVLRALVGFLSLFSFV 171 (400)
Q Consensus 96 ~l~a~~~~~~~~~~~k~~~~--~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (400)
.....++-...+...|.+.. .---|..++..+...+.+........+..+. ...+..++.++..++..+++..+-+
T Consensus 22 ~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n 101 (316)
T KOG1441|consen 22 FAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGN 101 (316)
T ss_pred HHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcc
Confidence 34444444455566777763 3334666666766666665554433332222 1234567778888999999999999
Q ss_pred HHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCc
Q 015813 172 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGS 251 (400)
Q Consensus 172 ~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (400)
.+++++|++-...+-.++|++++++++++.+|+.++..++.++....||.+....+. +
T Consensus 102 ~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~----------------------~ 159 (316)
T KOG1441|consen 102 VSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL----------------------S 159 (316)
T ss_pred hhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc----------------------c
Confidence 999999999999999999999999999999999999999999999999999887543 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCChHHHHHHHHHHHHHHHH-HHHHhhcCcc-------CCCHHHHHHH
Q 015813 252 DHMLAVLVGLFSSITGGISYCLIKAGAN---ASDQPLVTVFSFGILASPAAG-ICLFFFEEFV-------LPSFYSFLLM 320 (400)
Q Consensus 252 ~~~~G~l~~l~aa~~~a~~~v~~k~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~l 320 (400)
.++.|...++.+.++.+..+++.|+..+ ..-++.....+..-.+...++ +.....+... ..+.. ...+
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLIL 238 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHH
Confidence 4779999999999999999999999774 235677777787777777666 3333322211 12223 3333
Q ss_pred HHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCccccc
Q 015813 321 LVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 397 (400)
Q Consensus 321 ~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~ 397 (400)
+...++...-+...+..+.+.+|...+..+.+.-++.++.++++++++.++.+.+|.++.+.|+.++.+.+.+++++
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44447778888889999999999999999999999999999999999999999999999999999999887776654
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=6.6e-15 Score=114.94 Aligned_cols=133 Identities=20% Similarity=0.236 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCC---CHHHHHHHHHHHHHHHHHHH
Q 015813 256 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP---SFYSFLLMLVLSILAFFAEV 332 (400)
Q Consensus 256 G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gv~~~~~~~ 332 (400)
..++++++++.+++..++.|-..++.| +..-.+...+....++....+..++++.+ +++.|.+++..|+.++++.+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 578999999999999999998776555 44444556667777777777778888876 89999999999988899999
Q ss_pred HHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHH
Q 015813 333 LLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 333 ~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~ 389 (400)
+|++|++..+++++..+.-+.|++++++++++++|+++..+++|+++|++|.+++.+
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999877643
No 23
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.55 E-value=4.8e-12 Score=113.63 Aligned_cols=261 Identities=11% Similarity=0.072 Sum_probs=210.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHH
Q 015813 119 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR 198 (400)
Q Consensus 119 ~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~ 198 (400)
++..+.+..-+.+.++-..++...+.. ...++.++.....++...++..|.+.|++|++--.-.+--.+--+-+++.+.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~ 128 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGT 128 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHH
Confidence 567777888788877776666555444 3334455666677889999999999999999999998888888888899999
Q ss_pred HHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015813 199 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 278 (400)
Q Consensus 199 ~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~ 278 (400)
++.|.|+++.+.+..+++-.|+.+....+..+ +..+........|+++....-..-++.+..+.++.
T Consensus 129 Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~-------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf 195 (327)
T KOG1581|consen 129 LVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD-------------SSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLF 195 (327)
T ss_pred HHhcCccCcHHHHHHHHHHhheeeEEEecCCC-------------CccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh
Confidence 99999999999999999999998776543221 11111223578999999999999999999888866
Q ss_pred c-CCCChHHHHHHHHHHHHHHHHHHHHhhcCccC------CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHh
Q 015813 279 N-ASDQPLVTVFSFGILASPAAGICLFFFEEFVL------PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY 351 (400)
Q Consensus 279 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~ 351 (400)
+ ........+++..+...+.........+++.. ..+..+.-++.+..++.++|.+.++-+++.|+-..+.++.
T Consensus 196 ~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 196 KKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMT 275 (327)
T ss_pred ccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHH
Confidence 5 34567788888888888877776554444432 2567788888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCc
Q 015813 352 IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 393 (400)
Q Consensus 352 ~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~ 393 (400)
+.-+++++++.+.++.++++.|++|..+++.|+.+-.+.+.+
T Consensus 276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999998886655443
No 24
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2.1e-13 Score=117.50 Aligned_cols=283 Identities=13% Similarity=0.126 Sum_probs=211.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC-----------HHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHH
Q 015813 95 CMALSSTIYFFMQVISDVFMVQSIP-----------LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG 163 (400)
Q Consensus 95 l~l~a~~~~~~~~~~~k~~~~~~~~-----------~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
+...-.+|+-.+.+....+....+. .+.++|..+....++.=.++..+++ ...++..-+....++...
T Consensus 17 ca~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~-~~~D~t~~~~YaAcs~sY 95 (337)
T KOG1580|consen 17 CAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK-TEIDNTPTKMYAACSASY 95 (337)
T ss_pred EecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc-ccccCCcchHHHHHHHHH
Confidence 3444445666666676665422222 4556666666666555333333322 222333345667778888
Q ss_pred HHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcc
Q 015813 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEA 243 (400)
Q Consensus 164 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~ 243 (400)
.+++..-+.|++++|-....+-.+.-|+=+++++.++.+++.+|++...++++++||++..+.+..-.+
T Consensus 96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g----------- 164 (337)
T KOG1580|consen 96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG----------- 164 (337)
T ss_pred HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC-----------
Confidence 899999999999999999999999999999999999999999999999999999999999887532211
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHHHHHHhhc-CccC-----CCHHH
Q 015813 244 ISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFE-EFVL-----PSFYS 316 (400)
Q Consensus 244 ~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~ 316 (400)
........|.++.+++-.+-++....+.+..+. .......+++..+-+.+.+...+.+.+ -|.. -.+..
T Consensus 165 ----~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~ 240 (337)
T KOG1580|consen 165 ----AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYV 240 (337)
T ss_pred ----CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHH
Confidence 122345689999999999998888877765542 233455667777777776666555443 2322 13456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCc
Q 015813 317 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 393 (400)
Q Consensus 317 ~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~ 393 (400)
|.-+..+++++.+++++.+.-+...+|-.-+++....-+|+++.++++++.+++..||+|.++++.+...-....++
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 66677888889999999999999999999999999999999999999999999999999999999988777666553
No 25
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.54 E-value=1.3e-12 Score=118.56 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=166.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcccc
Q 015813 149 PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 228 (400)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~ 228 (400)
.++....+.+-++...+.+.+.++++++++++.-.++.++-.+++++++++++|+|++++||+++++.++|+.++-.++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 34445666777888999999999999999999999999999999999999999999999999999999999999876654
Q ss_pred ccccccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHhhc
Q 015813 229 TTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASD-QPLVTVFSFGILASPAAGICLFFFE 307 (400)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (400)
..... ++++..+.+........|.++.++++++.|+..++..+..|+.+ +.+.......+.+.++.++.....
T Consensus 93 ~~~~~-----~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~- 166 (244)
T PF04142_consen 93 QSSDN-----SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS- 166 (244)
T ss_pred ccccc-----ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 32110 00001111112345679999999999999999999999888653 344445555666666655554332
Q ss_pred CccCC----CHHHHHHHHHHHHH-HHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHH
Q 015813 308 EFVLP----SFYSFLLMLVLSIL-AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI 380 (400)
Q Consensus 308 ~~~~~----~~~~~~~l~~~gv~-~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li 380 (400)
++... -...|-...+.-++ ..++=++....+|+.+...=+.......+++.+.++++++.+++....+|+.+|
T Consensus 167 ~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 167 DGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 22211 11222222222222 355566667778999998889999999999999999999999999999998764
No 26
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.53 E-value=4.1e-15 Score=129.49 Aligned_cols=278 Identities=12% Similarity=0.103 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHH
Q 015813 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF 170 (400)
Q Consensus 91 ~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (400)
.|.++-++.+..-....-..|. .-+.|..|......+.+.+.-....+|+ +. . +..|+..++.++...-++++.
T Consensus 22 LGQiLSL~~t~~a~tss~la~k--~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~--~-~~~~~hYilla~~DVEaNy~v 95 (336)
T KOG2766|consen 22 LGQILSLLITSTAFTSSELARK--GINAPTSQTFLNYVLLALVYGPIMLFRR-KY--I-KAKWRHYILLAFVDVEANYFV 95 (336)
T ss_pred HHHHHHHHHHcchhhhHHHHhc--cCCCccHHHHHHHHHHHHHHhhHHHhhh-HH--H-HHHHHHhhheeEEeecccEEE
Confidence 4666666666555555555554 2356666665555555544443333443 21 1 222344777788889999999
Q ss_pred HHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCC
Q 015813 171 VYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRG 250 (400)
Q Consensus 171 ~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (400)
..|.||++...+.++.......+.+++|+++|-|.++.++.|+++|+.|++.+...|... .+...+
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a--------------gd~agg 161 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA--------------GDRAGG 161 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecc--------------ccccCC
Confidence 999999999999999999999999999999999999999999999999999998776442 122234
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCC-HHHHHHHHH--HHHHH
Q 015813 251 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPS-FYSFLLMLV--LSILA 327 (400)
Q Consensus 251 ~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--~gv~~ 327 (400)
++..+|+.+.+.+|.+||+.++.-..+.|+ .+....+....+.+.++..+- +..+..+..+ .++|....+ ..++.
T Consensus 162 snp~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L~M 239 (336)
T KOG2766|consen 162 SNPVKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFALTM 239 (336)
T ss_pred CCCccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHHHH
Confidence 567789999999999999999988887764 445566677778888777766 3333333211 111322222 33334
Q ss_pred HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCC
Q 015813 328 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 328 ~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
++-|.+....+|..+++..++-..+.-.++.++ ..||.+.+|..++....+..|.++...|.+
T Consensus 240 FllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 240 FLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred HHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 888999999999999999999999999999998 677888999999999999999887755443
No 27
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.52 E-value=1.2e-13 Score=112.47 Aligned_cols=122 Identities=23% Similarity=0.352 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCC---CCcCchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015813 101 TIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ---PIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 177 (400)
Q Consensus 101 ~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 177 (400)
++|+.+.+..|... ++.||.+..++|+..+.+ ++++....++ +...+++.....+.+.+....++.+++++++++
T Consensus 1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 46999999999987 779999999999999996 4444332222 233334444455555555789999999999999
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhh
Q 015813 178 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 178 ~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
+++.++++.++.|+++.+++++++||++++++++|+++++.|++++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 28
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.3e-11 Score=112.25 Aligned_cols=282 Identities=13% Similarity=0.104 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH--HHHHHHHHHHHHHHHHhhCC-C-CcCchhHHHHHHHHHHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETV--FMRCTVTLILSYLWLRRSGQ-P-IFGPMHARNLLVLRALVGFLSL 167 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~--~~r~~~~~l~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 167 (400)
.+..++.-+++--.+.+..|.+....--|..+. .++.+...+.+... .+.+- + ....++..+.++...+......
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~l-k~~~lv~~~~l~~~~~kk~~P~~~lf~~~i 91 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVL-KRLGLVNFRPLDLRTAKKWFPVSLLFVGML 91 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-HHhceeecCCcChHHHHHHccHHHHHHHHH
Confidence 345555556666667778888763332333333 36666666555443 33221 1 1223455566666677777777
Q ss_pred HHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccc
Q 015813 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLN 247 (400)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (400)
..-..+++++++...+++-+..|+++++....++|.|+++..+..+....+|......++...
T Consensus 92 ~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf----------------- 154 (314)
T KOG1444|consen 92 FTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF----------------- 154 (314)
T ss_pred HHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee-----------------
Confidence 777899999999999999999999999999999999999999999999999998887776443
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHHHHHHhhcCcc--------CCCHHHHH
Q 015813 248 VRGSDHMLAVLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEEFV--------LPSFYSFL 318 (400)
Q Consensus 248 ~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 318 (400)
+..|+.+++...+.-+.+.+..|+..+. .-.....++|..+.+++.+.+..+.++++. ..+...|.
T Consensus 155 -----~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~ 229 (314)
T KOG1444|consen 155 -----NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLV 229 (314)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHH
Confidence 3359999999999999999999986642 223445778888999988888887777654 23455677
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCcccc
Q 015813 319 LMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEM 396 (400)
Q Consensus 319 ~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 396 (400)
.+...|++++.-.++-.+..+..+++..++++...-..+.+-+.++.+++.++..++|..+-++|.++..+.+.++++
T Consensus 230 ~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 230 VMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 888888999666667778889999999999998788888888888888999999999999999999999887755544
No 29
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.50 E-value=6.3e-11 Score=109.40 Aligned_cols=286 Identities=13% Similarity=0.118 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHHHHHhhCCC----Cc--------CchhHHHHHH
Q 015813 93 LMCMALSSTIYFFMQVISDVFMVQS---IPLFETVFMRCTVTLILSYLWLRRSGQP----IF--------GPMHARNLLV 157 (400)
Q Consensus 93 ~ll~l~a~~~~~~~~~~~k~~~~~~---~~~~~~~~~r~~~~~l~l~~~~~~~~~~----~~--------~~~~~~~~~~ 157 (400)
++.++...+-++......|.....+ +.|....++--.+-.+++.....+..++ .. ..++....+.
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 4566667777888888888765333 6788888888888777776666554211 10 1122234455
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCC
Q 015813 158 LRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGL 237 (400)
Q Consensus 158 ~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~ 237 (400)
+-++..++.+.++|.++.+.+++...+..++-.+.|.++..+++++|++++||.++++-++|+.++-.+....
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~------- 169 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP------- 169 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC-------
Confidence 5677888888899999999999999999999999999999999999999999999999999999987443211
Q ss_pred cCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHHHHHHHHHhhcCcc------
Q 015813 238 VKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANAS-DQPLVTVFSFGILASPAAGICLFFFEEFV------ 310 (400)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 310 (400)
.+. .........+.|....+.++...++..++..+..|+. .+.+.........+.++.++........+
T Consensus 170 ---~~a-~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gf 245 (345)
T KOG2234|consen 170 ---TGA-KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGF 245 (345)
T ss_pred ---CCc-cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCc
Confidence 011 1122335678999999999999999999999988754 34444455555666666555554332111
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHH
Q 015813 311 --LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 388 (400)
Q Consensus 311 --~~~~~~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~ 388 (400)
..+...|..++.. +++-++....+|+.+-..=+....+..+++.+.++.+++-+++....+|+.+|+.++.+..
T Consensus 246 f~G~s~~vw~vVl~~----a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 246 FYGYSSIVWLVVLLN----AVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred cccccHHHHHHHHHH----hccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 1233334333333 4444455555677777777777788899999999999999999999999999999999988
Q ss_pred HcCCc
Q 015813 389 YIGPE 393 (400)
Q Consensus 389 ~~~~~ 393 (400)
..+.+
T Consensus 322 ~~P~~ 326 (345)
T KOG2234|consen 322 LYPAR 326 (345)
T ss_pred cCCcc
Confidence 55543
No 30
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.46 E-value=4.2e-11 Score=108.38 Aligned_cols=249 Identities=13% Similarity=0.056 Sum_probs=176.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH-hhHHHHHHHHH
Q 015813 119 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAA 197 (400)
Q Consensus 119 ~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~P~~~~ll~ 197 (400)
+|.+-.+--.+-+.++-+.....+++......+.+...+++|++..+++.+++.++++.+.+++.++. ...-+.+.+++
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g 90 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG 90 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence 34444444344444444444444443322224667788999999999999999999999999999995 57777789999
Q ss_pred HHHhcCcCcHHHH----HHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 015813 198 RIILREKLKIAEI----GGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL 273 (400)
Q Consensus 198 ~~~l~e~~~~~~~----~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~ 273 (400)
.++++|+.+..++ +++++.++|+++....+..... .....+...|.+..+++.+.|..|.++
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~--------------~~~~~~~~kgi~~Ll~stigy~~Y~~~ 156 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK--------------SSSKSNMKKGILALLISTIGYWIYSVI 156 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc--------------cccccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999887764 4888889999988876643211 011234567999999999999999999
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHhhH
Q 015813 274 IKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIE 353 (400)
Q Consensus 274 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~ 353 (400)
.|.. +.++....+-+++...+...++.... .....+...| .-...|++-.++..++..+.++.+.+..=.+..+.
T Consensus 157 ~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~k~~~-~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~ 231 (269)
T PF06800_consen 157 PKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFEKKSW-KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLG 231 (269)
T ss_pred HHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-cccccccchH-HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHH
Confidence 8873 23455555555555444444443322 1111222233 22455666688999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCchh----hhhhhHHHHHHHHH
Q 015813 354 VALTQLWGMGLSRIAPSFG----RLVGCVLILVSVFY 386 (400)
Q Consensus 354 pv~a~i~~~l~l~e~~~~~----~~~G~~li~~g~~~ 386 (400)
++++.+.|.+++||+=+.. .++|.++++.|.++
T Consensus 232 vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 232 VVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999986644 46788888887654
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.45 E-value=1.9e-12 Score=119.55 Aligned_cols=179 Identities=17% Similarity=0.120 Sum_probs=135.9
Q ss_pred ccccccccCCCCcccccccccCCCCCcccccccccccchhhhhhc----cCcchHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015813 41 EISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVW----NGSRYSGLMCMALSSTIYFFMQVISDVFMVQ 116 (400)
Q Consensus 41 ~~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~ll~l~a~~~~~~~~~~~k~~~~~ 116 (400)
.++.+..+..|..+...+.-..|||.+.++..+......++..+. ......|++++++++++|+.+.+..|... +
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~-~ 152 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLV-K 152 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHh-h
Confidence 344455555566555566666678777777555555555555332 13346799999999999999999999986 5
Q ss_pred CCCH--HHHHHHHHHHHHHHHHHHHHhhCCCCcCch-hHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHH
Q 015813 117 SIPL--FETVFMRCTVTLILSYLWLRRSGQPIFGPM-HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMA 193 (400)
Q Consensus 117 ~~~~--~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~ 193 (400)
+.++ .....+++.++.+++.++....++...... .+....+.+.+...+++.+|++++++.+++.++.+.++.|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~ 232 (260)
T TIGR00950 153 KEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVA 232 (260)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 6664 455557888888888877665544332233 3334555666677899999999999999999999999999999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHhh
Q 015813 194 SIAARIILREKLKIAEIGGLALSFFGV 220 (400)
Q Consensus 194 ~ll~~~~l~e~~~~~~~~g~~l~~~Gv 220 (400)
.+++++++||++++.+++|..+.+.|+
T Consensus 233 ~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 233 LLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999986
No 32
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.35 E-value=1.3e-11 Score=116.14 Aligned_cols=179 Identities=16% Similarity=0.152 Sum_probs=124.9
Q ss_pred ccccCCCCcccccccccCCCCCcccccccccccchhhhhhccC--------------cchHHHHHHHHHHHHHHHHHHHH
Q 015813 45 LLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVWNG--------------SRYSGLMCMALSSTIYFFMQVIS 110 (400)
Q Consensus 45 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~G~ll~l~a~~~~~~~~~~~ 110 (400)
+.....|.....++.-..|||++.++..+......++..+... +...|++++++++++|+.+.+..
T Consensus 96 ~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~ 175 (295)
T PRK11689 96 MVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVT 175 (295)
T ss_pred HHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555567777777765555555555533211 12359999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC-CcCchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhH
Q 015813 111 DVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-IFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTA 189 (400)
Q Consensus 111 k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~ 189 (400)
|... ++.++....+ ....+++.+.....+.. .....+.+..++..++...+++.+|++++++.+++.++.+.++.
T Consensus 176 k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~ 251 (295)
T PRK11689 176 RKYA-RGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFT 251 (295)
T ss_pred hhcc-CCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhH
Confidence 9975 6677765432 22223332222222221 11222334444455577788999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 190 PIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 190 P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
|++..+++++++||++++.+++|.++++.|+++....+
T Consensus 252 Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 252 PVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 99999999999999999999999999999998876543
No 33
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.33 E-value=1.7e-11 Score=117.66 Aligned_cols=191 Identities=10% Similarity=0.117 Sum_probs=132.7
Q ss_pred CCCccccccccccCCCCccccccccc------CCCCCcccccccccccchhhhhhc--cC--------------------
Q 015813 36 GTASDEISPLLAQSEKPKTNIFSVSY------TRRKPREHVIETDTSLTNCMLWVW--NG-------------------- 87 (400)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------------- 87 (400)
++++..+++++....|..+.+++... .+|+.+.++..+......|+.++. +.
T Consensus 100 ~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~ 179 (358)
T PLN00411 100 EYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPP 179 (358)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccc
Confidence 45566677777777776666666544 366666666555555555544321 11
Q ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHHHHHHHHh-hCCC--Cc-C--chhHHH
Q 015813 88 ------SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPL-FETVFMRCTVTLILSYLWLRR-SGQP--IF-G--PMHARN 154 (400)
Q Consensus 88 ------~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~-~~~~~~r~~~~~l~l~~~~~~-~~~~--~~-~--~~~~~~ 154 (400)
+...|.+++++++++|+++.+..|... +++++ ....++...++.+.+.+.... .+.. .+ . ......
T Consensus 180 ~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 258 (358)
T PLN00411 180 LSSSNSDWLIGGALLTIQGIFVSVSFILQAHIM-SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLIT 258 (358)
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHH
Confidence 113488999999999999999999876 55544 455666666665544433322 2211 11 1 111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcccc
Q 015813 155 LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 228 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~ 228 (400)
.+..++...+++.+|++++++.+++.++++.++.|++++++++++++|++++.+++|.++++.|+++...++.
T Consensus 259 -i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 259 -IVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 2223445567899999999999999999999999999999999999999999999999999999999886653
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.31 E-value=1.1e-11 Score=100.73 Aligned_cols=122 Identities=22% Similarity=0.242 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCc--cCCCHHHHHHHHHHHHHH-HHHHHHHHHHhccc
Q 015813 265 ITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--VLPSFYSFLLMLVLSILA-FFAEVLLARGLQLE 341 (400)
Q Consensus 265 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gv~~-~~~~~~~~~al~~~ 341 (400)
++||.+.+..|+..++ .++....++....+.+ ..+........ ..++...+...++.++++ .+++.++++++++.
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4688999999998764 6677777787777776 44444444333 456778888888889885 99999999999999
Q ss_pred CccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHH
Q 015813 342 KTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 388 (400)
Q Consensus 342 ~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~ 388 (400)
++++++.+.+++|+++.++++++++|++++.+++|+.+++.|+++..
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998864
No 35
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.27 E-value=2.8e-10 Score=107.03 Aligned_cols=136 Identities=12% Similarity=-0.003 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHH-HHHHHHHHHHHHHHH
Q 015813 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHAR-NLLVLRALVGFLSLF 168 (400)
Q Consensus 90 ~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 168 (400)
..|.++.++++++|+.+.+..|... ++.++....... .++.+++.++..............+ ..++++.++..+++.
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~ 224 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAG-AEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYS 224 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999985 677887765444 4555555555544332211122222 235666777889999
Q ss_pred HHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
+|++++++++++.++++.++.|+++.+++++++||++++.+++|.+++++|+++.....
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999886553
No 36
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.27 E-value=2.6e-10 Score=107.23 Aligned_cols=181 Identities=14% Similarity=0.080 Sum_probs=133.2
Q ss_pred ccccccCCCCcccccccccCCCCCcccccccccccchhhhhh-ccC---cchHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015813 43 SPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWV-WNG---SRYSGLMCMALSSTIYFFMQVISDVFMVQSI 118 (400)
Q Consensus 43 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~ 118 (400)
+.+.....|....+++.- .+||.+.++..+......|+.++ +++ ....|.++.++++++|+.+.+..|... + -
T Consensus 99 a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~-~-~ 175 (292)
T PRK11272 99 AAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSSRLP-L-P 175 (292)
T ss_pred HHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHhcC-C-C
Confidence 344444455555555543 47777777755555555555543 221 234699999999999999999999864 3 3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCC--c-CchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHH
Q 015813 119 PLFETVFMRCTVTLILSYLWLRRSGQPI--F-GPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASI 195 (400)
Q Consensus 119 ~~~~~~~~r~~~~~l~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~l 195 (400)
++....++...++.+.+.++........ . ....+....+.+.+...+++.+|++++++.++++++.+.++.|+++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i 255 (292)
T PRK11272 176 VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVL 255 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 4455667788887777766655433221 1 123344555666667789999999999999999999999999999999
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHhhhhhhcc
Q 015813 196 AARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (400)
Q Consensus 196 l~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 226 (400)
++++++||++++.+++|.++++.|+++....
T Consensus 256 ~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 256 LGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988654
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.27 E-value=2.8e-11 Score=101.81 Aligned_cols=211 Identities=11% Similarity=0.061 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCC
Q 015813 161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKP 240 (400)
Q Consensus 161 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~ 240 (400)
+.....++.|..|++++++++++.+..+.--|+.+++++.+|+|+...++++..+++.|++.+.+.+...
T Consensus 61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~---------- 130 (290)
T KOG4314|consen 61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH---------- 130 (290)
T ss_pred EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh----------
Confidence 3445678899999999999999999999999999999999999999999999999999999998765322
Q ss_pred CcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH------HHHHHh--hcCccCC
Q 015813 241 GEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAA------GICLFF--FEEFVLP 312 (400)
Q Consensus 241 ~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~ 312 (400)
...+.|+.+++.++.+.|+|-++-|+... ..+......++...+..-+ .+++.. .++|+..
T Consensus 131 ----------a~e~iGi~~AV~SA~~aAlYKV~FK~~iG-nAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsF 199 (290)
T KOG4314|consen 131 ----------ADEIIGIACAVGSAFMAALYKVLFKMFIG-NANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSF 199 (290)
T ss_pred ----------hhhhhhHHHHHHHHHHHHHHHHHHHHHhc-cCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHH
Confidence 35789999999999999999999998763 2222222222222222111 111111 2345544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCC
Q 015813 313 SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 313 ~~~~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
....|+.+...+.+...-..+.+.++....|-..++-+.....-...++.++-+-..+...+.|..+|.+|.++......
T Consensus 200 A~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d 279 (290)
T KOG4314|consen 200 AAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED 279 (290)
T ss_pred hhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence 55668888888877777788889999999999999998888888889998876667888999999999999887765543
No 38
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.26 E-value=9.3e-11 Score=93.87 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCc----CchhHHHHHHHHHHHH-HHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHH
Q 015813 125 FMRCTVTLILSYLWLRRSGQPIF----GPMHARNLLVLRALVG-FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI 199 (400)
Q Consensus 125 ~~r~~~~~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~ 199 (400)
.+|+..+.+++..+...+++... .+++.+.+.+..++.. ..++.++++|+++.| +.++++.+++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 57889888888776665443211 1123334445545555 488999999999999 58889999999999999999
Q ss_pred HhcCcCcHHHHHHHHHHHHhhhhhhccccc
Q 015813 200 ILREKLKIAEIGGLALSFFGVLFIFRRILT 229 (400)
Q Consensus 200 ~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~ 229 (400)
++|||++++++++++++++|++++..++..
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999988754
No 39
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.25 E-value=8.8e-10 Score=103.08 Aligned_cols=275 Identities=19% Similarity=0.135 Sum_probs=161.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHH-HHHHHHHHHHHH
Q 015813 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHAR-NLLVLRALVGFL 165 (400)
Q Consensus 87 ~~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 165 (400)
.+...|.++++.++++.+....+.|... .+.+. .- .++.....+... +.++.+.+...+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~-~r~~~---~~----------------~~~~~~~~~~l~~~~W~~G~~~~~~ 62 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSH-LRLPR---GS----------------LRAGSGGRSYLRRPLWWIGLLLMVL 62 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc---cc----------------ccccchhhHHHhhHHHHHHHHHHhc
Confidence 4456799999999999999999998753 11100 00 000000011111 223333445567
Q ss_pred HHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccc
Q 015813 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS 245 (400)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~ 245 (400)
+..+.+.|+...|.+..+++..+.-++..+++.+++|||++++++.|.++++.|..++......... ..+.
T Consensus 63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~---------~~t~ 133 (300)
T PF05653_consen 63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEP---------IHTL 133 (300)
T ss_pred chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCC---------cCCH
Confidence 7788899999999999999999999999999999999999999999999999999876543211100 0000
Q ss_pred ccc---CCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH-------HHHHH-HHhhcCccCCCH
Q 015813 246 LNV---RGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASP-------AAGIC-LFFFEEFVLPSF 314 (400)
Q Consensus 246 ~~~---~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~ 314 (400)
++. .......... .+...+...+.....+|..+++. ........+.+.. +.... ....++.+...+
T Consensus 134 ~~l~~~~~~~~fl~y~-~~~~~~~~~L~~~~~~r~g~~~i--~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~ 210 (300)
T PF05653_consen 134 DELIALLSQPGFLVYF-ILVLVLILILIFFIKPRYGRRNI--LVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYP 210 (300)
T ss_pred HHHHHHhcCcceehhH-HHHHHHHHHHHHhhcchhcccce--EEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhh
Confidence 100 0000011111 11112222222222223222111 1000000111110 00011 111122223356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHh-hHHHHHHHHHHHHhccc--Cch----hhhhhhHHHHHHHHHH
Q 015813 315 YSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIA--PSF----GRLVGCVLILVSVFYT 387 (400)
Q Consensus 315 ~~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~-~~pv~a~i~~~l~l~e~--~~~----~~~~G~~li~~g~~~~ 387 (400)
..|..++.+.++...-..+.|+|+++.+++.+.++.+ .-..++++-|.++++|. .++ ....|+.+++.|+.++
T Consensus 211 ~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL 290 (300)
T PF05653_consen 211 LTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLL 290 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhee
Confidence 6676666655555777788899999999999998888 56777888888888984 444 3477888899998888
Q ss_pred HHcCCc
Q 015813 388 MYIGPE 393 (400)
Q Consensus 388 ~~~~~~ 393 (400)
..+++.
T Consensus 291 ~~~~~~ 296 (300)
T PF05653_consen 291 SSSKDK 296 (300)
T ss_pred eccCch
Confidence 665443
No 40
>PRK13499 rhamnose-proton symporter; Provisional
Probab=99.24 E-value=2.4e-08 Score=94.17 Aligned_cols=291 Identities=10% Similarity=0.009 Sum_probs=182.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-HHHHHHHHHHHHHHhhC-CC-----CcCchhHHHHHHHH
Q 015813 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFM-RCTVTLILSYLWLRRSG-QP-----IFGPMHARNLLVLR 159 (400)
Q Consensus 87 ~~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~-r~~~~~l~l~~~~~~~~-~~-----~~~~~~~~~~~~~~ 159 (400)
++...|+++.+++++||+...+-.|+. ++.+-... +. -.+++.++.....-... +. .-.+.+.....++.
T Consensus 3 ~~~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 3 NAIILGIIWHLIGGASSGSFYAPFKKV--KKWSWETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred chhHHHHHHHHHHHHHhhccccccccc--CCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 345679999999999999999999983 44442222 21 11122222211100000 00 00224556778889
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHH-HhhHHHHHHHHHHHHhcCcC-------cHHHHHHHHHHHHhhhhhhccccccc
Q 015813 160 ALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKL-------KIAEIGGLALSFFGVLFIFRRILTTQ 231 (400)
Q Consensus 160 ~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~ll~~~~l~e~~-------~~~~~~g~~l~~~Gv~l~~~~~~~~~ 231 (400)
|+...+++..++.++++.+.+.+.++ ..+.-++..++..++++|.. ...-.+|++++++|+++........+
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999888 57899999999999999865 23468899999999999887433221
Q ss_pred cccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHH-------HHHHhhccCCCChHHHHHHHHH---HHHHHH-H
Q 015813 232 AVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY-------CLIKAGANASDQPLVTVFSFGI---LASPAA-G 300 (400)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~~---~~~~~~-~ 300 (400)
. +...++.......+|+++++++.+.++.|+ ...+...+.+.++.....-+.+ .+..+. .
T Consensus 160 ~---------~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~ 230 (345)
T PRK13499 160 R---------KMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNL 230 (345)
T ss_pred c---------ccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 1 111110122446689999999999999999 4433311112222222222222 222221 1
Q ss_pred HHHHh---h-cCcc---CC--C----HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhh----hHhhHHHHHHHHHHH
Q 015813 301 ICLFF---F-EEFV---LP--S----FYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVAN----VQYIEVALTQLWGMG 363 (400)
Q Consensus 301 ~~~~~---~-~~~~---~~--~----~~~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~----~~~~~pv~a~i~~~l 363 (400)
+.... . .++. .. + ......-...|++-.+++.++..+-++.+...... .+.+..+++.++|.
T Consensus 231 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi- 309 (345)
T PRK13499 231 GFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL- 309 (345)
T ss_pred HHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-
Confidence 11111 1 1111 11 1 22333334455555788888888888886654443 34788899999998
Q ss_pred HhcccCc------hhhhhhhHHHHHHHHHHHHc
Q 015813 364 LSRIAPS------FGRLVGCVLILVSVFYTMYI 390 (400)
Q Consensus 364 ~l~e~~~------~~~~~G~~li~~g~~~~~~~ 390 (400)
+++|.=+ ..-++|+++++.|..++...
T Consensus 310 ~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 310 VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 5999755 45689999999999887664
No 41
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.21 E-value=2.4e-09 Score=96.44 Aligned_cols=247 Identities=15% Similarity=0.107 Sum_probs=180.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCC------cCchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHH
Q 015813 119 PLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIM 192 (400)
Q Consensus 119 ~~~~~~~~r~~~~~l~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~ 192 (400)
-|+.++.+..++-.++.....+.++.+. ..+++..+.+...+++.++-..+-++++++++.+.-++..+..++|
T Consensus 44 fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F 123 (349)
T KOG1443|consen 44 FPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF 123 (349)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence 4677777777766665554443332221 1223445666788888888899999999999999999999999999
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHH
Q 015813 193 ASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYC 272 (400)
Q Consensus 193 ~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v 272 (400)
+.+++.+|-=||++|.-..-++++.+|+++....+.. -+..|..+.+.++.+.++-..
T Consensus 124 IllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq----------------------f~i~Gf~lv~~aS~~sGlRW~ 181 (349)
T KOG1443|consen 124 ILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ----------------------FNIEGFFLVLAASLLSGLRWA 181 (349)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc----------------------eeehhHHHHHHHHHhhhhhHH
Confidence 9999999888999999999999999999998876532 245788888888888888888
Q ss_pred HHHhhccCCC----ChHHHHHHHHHHHHHHHHHHHHhhcCccC---------CCHH-HHHHHHHH---HHHHHHHHHHHH
Q 015813 273 LIKAGANASD----QPLVTVFSFGILASPAAGICLFFFEEFVL---------PSFY-SFLLMLVL---SILAFFAEVLLA 335 (400)
Q Consensus 273 ~~k~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~l~~~---gv~~~~~~~~~~ 335 (400)
+.+++.++++ +|..++++..-...+.+++.....++... .+.. .+..+..+ |.++++--..-+
T Consensus 182 ~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEf 261 (349)
T KOG1443|consen 182 FTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEF 261 (349)
T ss_pred HHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665433 56666666555555554554444443321 1221 22222222 333334444455
Q ss_pred HHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHH
Q 015813 336 RGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYT 387 (400)
Q Consensus 336 ~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~ 387 (400)
..+.+.+.-..++..-..-+.+.+++..+.+++++...++|..+...|+.+-
T Consensus 262 lLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 262 LLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred heeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 6678888899999999999999999999999999999999999999998887
No 42
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.17 E-value=8.6e-11 Score=109.82 Aligned_cols=181 Identities=12% Similarity=0.044 Sum_probs=123.6
Q ss_pred cccccccCCCCcccccccccCCCCCcccccccccccchhhhhhc-c---CcchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015813 42 ISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVW-N---GSRYSGLMCMALSSTIYFFMQVISDVFMVQS 117 (400)
Q Consensus 42 ~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~ 117 (400)
+........+......+.-..+|+++.++.-+......++..+. . .....|..++++++++|+.+.+..|... ++
T Consensus 91 ~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~-~~ 169 (281)
T TIGR03340 91 LVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAA-LG 169 (281)
T ss_pred hhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccccc-cc
Confidence 33333444455454555555678777777666555555555331 1 1234688899999999999999988753 33
Q ss_pred CCHH----HHHHHHHHHHHHHHHHHHHhhCCC-C-cCchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHH
Q 015813 118 IPLF----ETVFMRCTVTLILSYLWLRRSGQP-I-FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI 191 (400)
Q Consensus 118 ~~~~----~~~~~r~~~~~l~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~ 191 (400)
.++. ....+......+.+.++....+.. . ....+.+...+..++...+++.+|++++++.+++.++.+.++.|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv 249 (281)
T TIGR03340 170 VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIV 249 (281)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHH
Confidence 4432 223333333312222222222221 1 122344556777788888999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhh
Q 015813 192 MASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (400)
Q Consensus 192 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 223 (400)
++.+++++++||++++.+++|.+++++|++++
T Consensus 250 ~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 250 FAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 99999999999999999999999999999863
No 43
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.16 E-value=7.4e-10 Score=104.45 Aligned_cols=185 Identities=13% Similarity=0.126 Sum_probs=130.6
Q ss_pred cccccccCCCCcccccccccCCCCCcccccccccccchhhhhhc-c---C--cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015813 42 ISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVW-N---G--SRYSGLMCMALSSTIYFFMQVISDVFMV 115 (400)
Q Consensus 42 ~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~--~~~~G~ll~l~a~~~~~~~~~~~k~~~~ 115 (400)
++....+.++..+.+++.-..||+++.++.-+......++..+. + . ....|++++++++++|+.+.+..|...
T Consensus 88 ~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~- 166 (299)
T PRK11453 88 LASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIM- 166 (299)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 33444455555555666666788887777666555555555332 1 1 123699999999999999999999864
Q ss_pred CCCC---HHHHHHHHHHHHHHHHHHHHH-hhCCC-------CcCchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Q 015813 116 QSIP---LFETVFMRCTVTLILSYLWLR-RSGQP-------IFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATV 184 (400)
Q Consensus 116 ~~~~---~~~~~~~r~~~~~l~l~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~ 184 (400)
++.+ .....++-..++.+.+..... ..+.. ......+....+++.+...+++.+|++++++.++++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~ 246 (299)
T PRK11453 167 SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAP 246 (299)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3332 233334444444333322221 12111 122234555667777888899999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 185 LSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 185 l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
+..+.|++..+++++++||++++.+++|.+++++|+++...+.
T Consensus 247 ~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 247 LSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999999999999999999887654
No 44
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.15 E-value=2.8e-09 Score=91.59 Aligned_cols=283 Identities=11% Similarity=0.056 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCCCC-HHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 015813 96 MALSSTIYFFMQVISDVFM-VQSIP-LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYS 173 (400)
Q Consensus 96 ~l~a~~~~~~~~~~~k~~~-~~~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 173 (400)
.+.-+..--++.+..|.+. ..+.+ -+.+++.+.+...+-+..+-..+-.+.+ ....+.++.-.+......+.--.+
T Consensus 11 ~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR--~t~aK~WfpiSfLLv~MIyt~SKs 88 (309)
T COG5070 11 SLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR--LTKAKKWFPISFLLVVMIYTSSKS 88 (309)
T ss_pred HHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee--hhhhhhhcCHHHHHHHHHHhcccc
Confidence 3333444445566667654 12222 3455666666655544443222111111 111222233344444445555689
Q ss_pred HhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchh
Q 015813 174 IQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDH 253 (400)
Q Consensus 174 l~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (400)
++|.++..-+++.++..+.++.....++|.|.+-.+.....+.+..-+.-.++|..... .....-
T Consensus 89 LqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~---------------~~~~~l 153 (309)
T COG5070 89 LQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA---------------FKAQIL 153 (309)
T ss_pred eeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHH---------------HHhccc
Confidence 99999999999999999999999999999999999999999888888777766532110 000112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHHHHHHhhcCccCC------CHHHHHHHHHHHHH
Q 015813 254 MLAVLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEEFVLP------SFYSFLLMLVLSIL 326 (400)
Q Consensus 254 ~~G~l~~l~aa~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gv~ 326 (400)
-.|++++...++.-+.+....|+..|. .-....+++|..+.+.+++..+.+..++|.+- +.....+++..|++
T Consensus 154 N~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~ 233 (309)
T COG5070 154 NPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLC 233 (309)
T ss_pred CCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHH
Confidence 258888888899999888888875542 12345789999999999999999999988754 34456678888998
Q ss_pred HHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCccc
Q 015813 327 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 395 (400)
Q Consensus 327 ~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 395 (400)
++.--++-.|.++-.+.+..+++..++-.-..+.|.++++|+.+...+..+.+-..+.++....+.+|+
T Consensus 234 svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 234 SVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred HhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 855556778899999999999999999999999999999999999999999988888777776655443
No 45
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.11 E-value=3e-10 Score=107.29 Aligned_cols=190 Identities=11% Similarity=0.085 Sum_probs=135.9
Q ss_pred CCccccccccccCCCCcccccccccCCCCCcccccccccccchhhhhhcc---CcchHHHHHHHHHHHHHHHHHHHHHHh
Q 015813 37 TASDEISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVWN---GSRYSGLMCMALSSTIYFFMQVISDVF 113 (400)
Q Consensus 37 ~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G~ll~l~a~~~~~~~~~~~k~~ 113 (400)
+++..+..+.....|..+.+++.-..+|+.+.++.........|+...-. .....|.+++++++++|+.+.+..|..
T Consensus 88 ~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~ 167 (302)
T TIGR00817 88 KVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKA 167 (302)
T ss_pred hccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666666666666777766665554445555543211 223569999999999999999999987
Q ss_pred hcC--CCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCch---------h---HHHHHHHHHH-HHHHHHHHHHHHHhccc
Q 015813 114 MVQ--SIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPM---------H---ARNLLVLRAL-VGFLSLFSFVYSIQRLP 178 (400)
Q Consensus 114 ~~~--~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~---------~---~~~~~~~~~~-~~~~~~~~~~~al~~~~ 178 (400)
. + ++++..+.++...++.++++++............ . .+...+..+. +....+.++++++++++
T Consensus 168 ~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s 246 (302)
T TIGR00817 168 M-TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVS 246 (302)
T ss_pred h-ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 6 5 7999999999999998888877654332111100 0 0111112222 23334456678999999
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 179 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 179 ~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
+..++++..+.|+++.+++++++||+++..+++|.++++.|+++....+
T Consensus 247 a~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 247 PLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred chHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999877544
No 46
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.8e-10 Score=101.80 Aligned_cols=255 Identities=13% Similarity=0.087 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCC----Cc----CchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHH
Q 015813 119 PLFETVFMRCTVTLILSYLWLRRSGQP----IF----GPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP 190 (400)
Q Consensus 119 ~~~~~~~~r~~~~~l~l~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P 190 (400)
.|..+.++.++....+...+-+...+- .. .+-+..+..+-..+.......+-++++++++++--.+-..+.-
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 578888888888877776654422211 01 1112233444445555566677788999999998888889999
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHH
Q 015813 191 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS 270 (400)
Q Consensus 191 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~ 270 (400)
+|++++.+.++|+|-+..-..+.++++.|..+=...+.. .+.-.+.|.+++++++++-|+.
T Consensus 140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~-------------------~~~ls~~GvifGVlaSl~vAln 200 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGS-------------------TGTLSWIGVIFGVLASLAVALN 200 (347)
T ss_pred hHHHHhHHhhcccccccccceeehhheehheeccccccc-------------------cCccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999988887664433211 2245678999999999999999
Q ss_pred HHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHhhcCc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015813 271 YCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEF-------VLPSFYSFLLMLVLSILAFFAEVLLARGLQLEK 342 (400)
Q Consensus 271 ~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gv~~~~~~~~~~~al~~~~ 342 (400)
.+..|+... -.+..+...+|..+.++++++..+...++. +.++...|..+...|++++...+.-.+-+|-.+
T Consensus 201 aiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TS 280 (347)
T KOG1442|consen 201 AIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTS 280 (347)
T ss_pred HHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecc
Confidence 999998553 346678888999999988888777655432 234677888889999998554445556678888
Q ss_pred ccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCC
Q 015813 343 TSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 343 a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
|-+-.+-..-......++++.+++|..+..-|-+-.+|+.|.....+.++
T Consensus 281 plThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~ 330 (347)
T KOG1442|consen 281 PLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKE 330 (347)
T ss_pred cceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHH
Confidence 88888888888888899999999999999999999999999888877543
No 47
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.96 E-value=2.3e-08 Score=94.15 Aligned_cols=135 Identities=10% Similarity=0.014 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccC-----CCHHHHHHHHHHHHH
Q 015813 252 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL-----PSFYSFLLMLVLSIL 326 (400)
Q Consensus 252 ~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gv~ 326 (400)
+...|++++++++++|+...+..|.. . ..++....++..+.+.++.........++.. -+...+...+ .+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLA-VSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHH-HHHH
Confidence 45689999999999999999999874 3 4567888888888877655544433222111 1334443333 4544
Q ss_pred H-HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHH
Q 015813 327 A-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 327 ~-~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~ 389 (400)
+ ++.+.++++++++.+++.++++.++.|++..++++++++|+++..+++|.++.+.|+.++..
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4 78899999999999999999999999999999999999999999999999999999988764
No 48
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.95 E-value=1.9e-10 Score=100.24 Aligned_cols=274 Identities=12% Similarity=0.051 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (400)
+++.+++.++.|++...+..+. +-.|.+-..-.-+-+.++.+.+++...+ ......+...++.|....+++...+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~~~p--~~T~~~~iv~~isG~~Ws~GQ~~Qf 77 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLFVSP--ELTLTIFIVGFISGAFWSFGQANQF 77 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHheeecC--ccchhhHHHHHHhhhHhhhhhhhhh
Confidence 6788999999999999887763 3455555554444455554444444222 2334556677888899999999999
Q ss_pred HHHhccchhhHHHHH-hhHHHHHHHHHHHHhcCcCcHHHH----HHHHHHHHhhhhhhccccccccccCCCcCCCccccc
Q 015813 172 YSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEI----GGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 246 (400)
Q Consensus 172 ~al~~~~~~~a~~l~-~~~P~~~~ll~~~~l~e~~~~~~~----~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (400)
.|+++.+++++.++. ...-+-+.+++.+.++|+.+..+. +++++.++|+++....+.....
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~-------------- 143 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE-------------- 143 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc--------------
Confidence 999999999999995 566777888899999999998874 5677778888877766532111
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHH
Q 015813 247 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSIL 326 (400)
Q Consensus 247 ~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 326 (400)
....+..-.|....+.+.+.|-.|.++.+... .+.+....-+.+...+...++...-. .....+.-..-..-|+.
T Consensus 144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~---v~g~saiLPqAiGMv~~ali~~~~~~--~~~~~K~t~~nii~G~~ 218 (288)
T COG4975 144 EENPSNLKKGIVILLISTLGYVGYVVLFQLFD---VDGLSAILPQAIGMVIGALILGFFKM--EKRFNKYTWLNIIPGLI 218 (288)
T ss_pred ccChHhhhhheeeeeeeccceeeeEeeecccc---ccchhhhhHHHHHHHHHHHHHhhccc--ccchHHHHHHHHhhHHH
Confidence 11123355788888899999999998888753 22333334444433333333332221 23333333344566777
Q ss_pred HHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhh----hhhhHHHHHHHHHHHH
Q 015813 327 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGR----LVGCVLILVSVFYTMY 389 (400)
Q Consensus 327 ~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~----~~G~~li~~g~~~~~~ 389 (400)
-.++...+..+.++.+.+..=.+..+..+.+.+=|.++++|+=|..+ +.|+++++.|..+...
T Consensus 219 Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 219 WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 78999999999999998888888888899999999999999877655 6788888888777654
No 49
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.95 E-value=1.8e-07 Score=83.44 Aligned_cols=222 Identities=9% Similarity=0.080 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcccccccccc
Q 015813 155 LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS 234 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~ 234 (400)
..+.-+++...+..+.|.++.+++++.-.++.....+|+.+++.-+++++++.+||+|+....+|++++...+.....
T Consensus 88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~-- 165 (372)
T KOG3912|consen 88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT-- 165 (372)
T ss_pred eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc--
Confidence 445578899999999999999999999999999999999999999999999999999999999999998766543211
Q ss_pred CCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHhh-----c-
Q 015813 235 GGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFF-----E- 307 (400)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~- 307 (400)
+....-+.-..|+++.+.+-+.-|+.+++-.|..+ ...++.....+..+.+.++..+..... +
T Consensus 166 ----------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~ 235 (372)
T KOG3912|consen 166 ----------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGD 235 (372)
T ss_pred ----------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCC
Confidence 00011134567999999999999999998877554 456788888888888866655443321 1
Q ss_pred Ccc-CC--CHHHHHHH---------HHHHHHH-HHHHHHHH----HHhcccCccchhhhHhhHHHHHHHHHHHHhcccCc
Q 015813 308 EFV-LP--SFYSFLLM---------LVLSILA-FFAEVLLA----RGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPS 370 (400)
Q Consensus 308 ~~~-~~--~~~~~~~l---------~~~gv~~-~~~~~~~~----~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~ 370 (400)
.+. .+ ...+|... ++..+.+ .++-.+++ .--|+.+++.=.++-.+...+--+++.....|.++
T Consensus 236 sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ 315 (372)
T KOG3912|consen 236 SFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFH 315 (372)
T ss_pred cCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHH
Confidence 111 01 12223211 1222222 22222222 22345566666777777777777788888899999
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 015813 371 FGRLVGCVLILVSVFYTM 388 (400)
Q Consensus 371 ~~~~~G~~li~~g~~~~~ 388 (400)
..|+.|.++.+.|+++.+
T Consensus 316 llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 316 LLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999876
No 50
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.94 E-value=1.6e-08 Score=85.44 Aligned_cols=133 Identities=18% Similarity=0.150 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC------CCChHHHHHHHHHHHHHHHHHHHHhhcCccCC-------------CHHH
Q 015813 256 AVLVGLFSSITGGISYCLIKAGANA------SDQPLVTVFSFGILASPAAGICLFFFEEFVLP-------------SFYS 316 (400)
Q Consensus 256 G~l~~l~aa~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 316 (400)
|.++++.+.++.|++.++.|+..++ ..++.....+....+.+...+..+..+.+... +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5688999999999999999986654 55678888888888888888877766544310 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHH
Q 015813 317 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 388 (400)
Q Consensus 317 ~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~ 388 (400)
+..++..|+++.+-+...+..+++.+|...++...+..+...+.++++++|++++.+++|.++.+.|+++..
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 666677788889999999999999999999999999999999999999999999999999999999988754
No 51
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.92 E-value=7.6e-08 Score=89.87 Aligned_cols=173 Identities=18% Similarity=0.195 Sum_probs=118.7
Q ss_pred CCccccccc-ccCCCCCcccccccccccchhhhhhcc-Cc-----chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q 015813 51 KPKTNIFSV-SYTRRKPREHVIETDTSLTNCMLWVWN-GS-----RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFET 123 (400)
Q Consensus 51 ~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~ 123 (400)
+.....++. -..+|+.+.++..+......++..+.. .. ...|.++.+.++++|+.+.+..|... ..++...
T Consensus 107 p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~ 184 (292)
T COG0697 107 PLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS--RLGPVTL 184 (292)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHH
Confidence 333334442 333666666665554444555554322 11 24799999999999999999999864 5667666
Q ss_pred HH-HHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHH-HHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHh
Q 015813 124 VF-MRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRA-LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIIL 201 (400)
Q Consensus 124 ~~-~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l 201 (400)
.. +.......+..+....... .......+......+ +....++.++++++++.++..++.+..+.|++..+++++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~ 263 (292)
T COG0697 185 ALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLL 263 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 66 3333222222222222222 122233334444444 44447999999999999999999999999999999999999
Q ss_pred cCcCcHHHHHHHHHHHHhhhhhhcc
Q 015813 202 REKLKIAEIGGLALSFFGVLFIFRR 226 (400)
Q Consensus 202 ~e~~~~~~~~g~~l~~~Gv~l~~~~ 226 (400)
+|+++..+++|.++.+.|+.+....
T Consensus 264 ~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 264 GEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988754
No 52
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.91 E-value=1.9e-08 Score=96.84 Aligned_cols=183 Identities=9% Similarity=0.157 Sum_probs=125.5
Q ss_pred cccccccCCCCcccccccccCCCCCcccccccccccchhhhhhcc---CcchHHHHHHHHHHHHHHHHHHHHHHhhcC--
Q 015813 42 ISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVWN---GSRYSGLMCMALSSTIYFFMQVISDVFMVQ-- 116 (400)
Q Consensus 42 ~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G~ll~l~a~~~~~~~~~~~k~~~~~-- 116 (400)
...+....+|..+-+++.-..+|+.+.++.........|+...-. .....|.++++++.++|++.++..|....+
T Consensus 142 ~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~ 221 (350)
T PTZ00343 142 FTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKS 221 (350)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333444444554555666666777777776655555555553321 123469999999999999999999998622
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHhh-CCCCc--------C-chhHHHHHHHHHHHHHHHHHHH----HHHHhccc
Q 015813 117 ----SIPLFETVFMRCTVTLILSYLWLRRS-GQPIF--------G-PMHARNLLVLRALVGFLSLFSF----VYSIQRLP 178 (400)
Q Consensus 117 ----~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~----~~al~~~~ 178 (400)
++++.....+-..++.++++|+.... ..... . ........+...+...+.+.++ ++++++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s 301 (350)
T PTZ00343 222 EIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVN 301 (350)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36677777777788888877765422 11100 0 0000111111233334444444 47999999
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhh
Q 015813 179 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 179 ~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
+...++...+-|+++.++++++++|++++.+++|.++++.|+++-.
T Consensus 302 ~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 302 QVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred hhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998754
No 53
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.89 E-value=4.8e-08 Score=89.99 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCc-------cCCCHHH-HHHHHHHHHH
Q 015813 255 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-------VLPSFYS-FLLMLVLSIL 326 (400)
Q Consensus 255 ~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~l~~~gv~ 326 (400)
+|.++.++++++|+...+..|.. . +.++....++..+.+.+...+......+. +..+... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 48899999999999999999984 3 46788888888888876655544332221 1122222 4445666676
Q ss_pred HHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHH
Q 015813 327 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 327 ~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~ 389 (400)
....+.++++++++.+++.++.+.++.|+++.++++++++|+++..+++|.++.++|+.++..
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999987754
No 54
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.88 E-value=8.4e-08 Score=85.04 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccc
Q 015813 152 ARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ 231 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~ 231 (400)
.|+.....++.....+.+-+-++.|++--.-.++..+--+=+++.+.++-|.|..+.+.++..+...|.+.....|...
T Consensus 105 P~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~- 183 (367)
T KOG1582|consen 105 PWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT- 183 (367)
T ss_pred chhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc-
Confidence 3455555566666666677777777776666666666666666778888999999999999999999999888766432
Q ss_pred cccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 015813 232 AVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEFV 310 (400)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (400)
....+..|+.+.-.+-++-|+.--++.+..| ...+.....++...++.+.....+...++.-
T Consensus 184 -----------------sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f 246 (367)
T KOG1582|consen 184 -----------------SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELF 246 (367)
T ss_pred -----------------CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccch
Confidence 1133567888887777777766655555444 3345556667777777777666655444321
Q ss_pred -C------CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHH
Q 015813 311 -L------PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVS 383 (400)
Q Consensus 311 -~------~~~~~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g 383 (400)
. ......++.+.....+.+++......++..++..++.++...-.++++++++++..++|....-|..+|+.|
T Consensus 247 ~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lg 326 (367)
T KOG1582|consen 247 SAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLG 326 (367)
T ss_pred hhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHH
Confidence 1 123467777777777888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccc
Q 015813 384 VFYTMYIGPEKE 395 (400)
Q Consensus 384 ~~~~~~~~~~~~ 395 (400)
+++-.+.+++|.
T Consensus 327 I~Ln~ysk~nk~ 338 (367)
T KOG1582|consen 327 IYLNMYSKRNKI 338 (367)
T ss_pred HHhhcccCCCCC
Confidence 999888875543
No 55
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.87 E-value=1.1e-07 Score=80.20 Aligned_cols=131 Identities=21% Similarity=0.273 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHHhhCCCC--------cC-----chhH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFMVQ------SIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FG-----PMHA 152 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~--------~~-----~~~~ 152 (400)
|.++++.+.++.++..+..|....+ +.++.++..+....+.+++.+.....+... .. ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6788999999999999999988633 789999999999999988888755433221 00 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhh
Q 015813 153 RNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (400)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l 222 (400)
...++..++..+..+.+.+..++++++...++....-.+++.+++.++++|+++..+++|++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 5567777888889999999999999999999999999999999999999999999999999999999875
No 56
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.85 E-value=1.3e-07 Score=75.03 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhc
Q 015813 156 LVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~ 225 (400)
.....++...++.++.+++++.|.+.+..+..+.++++.+++++++|||++++|++|++++++|++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3334466778999999999999999999999999999999999999999999999999999999988753
No 57
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.82 E-value=1.6e-07 Score=76.34 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHH
Q 015813 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF 170 (400)
Q Consensus 91 ~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (400)
+|+++++.+.++-+...++.|.-. ++.+..+.... .. ..+ ... .......+++.++..+++.+|
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~-~~~g~~~~~~~-~~-~~~------~~~-------~~p~~~i~lgl~~~~la~~~w 65 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGM-SRLPLLSHAWD-FI-AAL------LAF-------GLALRAVLLGLAGYALSMLCW 65 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhH-HH-HHH------HHH-------hccHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999875 44443332221 10 000 000 111346777888999999999
Q ss_pred HHHHhccchhhHHHHHhhHHHHHHHHHHH--HhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 171 VYSIQRLPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 171 ~~al~~~~~~~a~~l~~~~P~~~~ll~~~--~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
.+++++.|++.+.++....+.++.+.++. ++||++++.+++|++++++|++++..++
T Consensus 66 ~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 66 LKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999888888885 8999999999999999999999987654
No 58
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.80 E-value=6e-08 Score=87.37 Aligned_cols=208 Identities=11% Similarity=0.124 Sum_probs=130.4
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcccccccc---cc-CC-CcCCCcccccccCCch
Q 015813 178 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQA---VS-GG-LVKPGEAISLNVRGSD 252 (400)
Q Consensus 178 ~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~---~~-~~-~~~~~~~~~~~~~~~~ 252 (400)
+......+.+..++++++..+.+.++|.++.++++.++...|++.....+..... .. +. ..+.++..+.....+.
T Consensus 3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~ 82 (222)
T TIGR00803 3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGN 82 (222)
T ss_pred cccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccccc
Confidence 4445566778889999999999999999999999999999998765443321100 00 00 0000000000111235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCChH-HHHHHHHHHHHHHHHHHHHhhcCccC--C-C-HHHHH-HHHHHHHH
Q 015813 253 HMLAVLVGLFSSITGGISYCLIKAGANASDQPL-VTVFSFGILASPAAGICLFFFEEFVL--P-S-FYSFL-LMLVLSIL 326 (400)
Q Consensus 253 ~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~-~l~~~gv~ 326 (400)
.+.|....+.+..+-++..++.++..|.++... .......+.+.+...... ...+... . . ...+. ......++
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVL-LWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHH-hhcccchhhccCcccCCchHHHHHHHH
Confidence 677888888888888888888888665443221 111112222222111111 1111110 0 0 00111 11223344
Q ss_pred HHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHH
Q 015813 327 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 386 (400)
Q Consensus 327 ~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~ 386 (400)
..+++.+..+.+|+.++...+....++++++.+++++++||+++..+++|+.+++.|+.+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 577888899999999999999999999999999999999999999999999999988653
No 59
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.78 E-value=1.6e-07 Score=76.35 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHH-HHHHHH
Q 015813 255 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-FFAEVL 333 (400)
Q Consensus 255 ~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~-~~~~~~ 333 (400)
.|.++.+++.++-+...++.|+..++.... ..... .. . .... ..++. ..++.|+++ ++++.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~-~~~~~-~~-~----~~~~-------~~~p~---~~i~lgl~~~~la~~~ 64 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLL-SHAWD-FI-A----ALLA-------FGLAL---RAVLLGLAGYALSMLC 64 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCc-cchhH-HH-H----HHHH-------HhccH---HHHHHHHHHHHHHHHH
Confidence 377888999999999999999866532211 11110 00 0 0000 01111 135566665 899999
Q ss_pred HHHHhcccCccchhhhHhhHHHHHHHHHHH--HhcccCchhhhhhhHHHHHHHHHHHHcCCc
Q 015813 334 LARGLQLEKTSKVANVQYIEVALTQLWGMG--LSRIAPSFGRLVGCVLILVSVFYTMYIGPE 393 (400)
Q Consensus 334 ~~~al~~~~a~~~s~~~~~~pv~a~i~~~l--~l~e~~~~~~~~G~~li~~g~~~~~~~~~~ 393 (400)
|.+++++.+++++..+..+.+++..+.++. ++||++++.+++|+++|++|++++.+.+++
T Consensus 65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999998888888885 899999999999999999999998765443
No 60
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.67 E-value=5e-07 Score=84.72 Aligned_cols=128 Identities=18% Similarity=0.234 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH----HHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHH
Q 015813 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCT----VTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFL 165 (400)
Q Consensus 90 ~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (400)
.+|+++.++++++++.+.+..|.. +.+|....+.... .+.++..+. ++. +... .+..+..++.|+...+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~-~~~~-~~~~~~~~~~Gi~~~i 223 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--ILA-KPLK-KYAILLNILPGLMWGI 223 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--hcc-cchH-HHHHHHHHHHHHHHHH
Confidence 579999999999999999999974 4788888555554 333333333 111 1122 2233344447777889
Q ss_pred HHHHHHHHHh-ccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHH----HHHHHHHHhhhhhh
Q 015813 166 SLFSFVYSIQ-RLPLSQATVLSFTAPIMASIAARIILREKLKIAEI----GGLALSFFGVLFIF 224 (400)
Q Consensus 166 ~~~~~~~al~-~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~----~g~~l~~~Gv~l~~ 224 (400)
++.+|+.+.+ +.+++.++++....|+...+.+.+++||+.+++++ +|.++.+.|+.++.
T Consensus 224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999999999999999999999999999 99999999998874
No 61
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.64 E-value=5.3e-07 Score=80.32 Aligned_cols=263 Identities=9% Similarity=0.038 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHhhHHHHHHHHHHH
Q 015813 121 FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQR-LPLSQATVLSFTAPIMASIAARI 199 (400)
Q Consensus 121 ~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~a~~l~~~~P~~~~ll~~~ 199 (400)
-.++|..+++-..--++..-.- ...+++-.++.........+..+.+-+++++. +|...=.++-.-.++-+++++++
T Consensus 34 NLITFaqFlFia~eGlif~skf--~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~i 111 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKF--FTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWI 111 (330)
T ss_pred eehHHHHHHHHHHhceeeeccc--cccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHH
Confidence 6677777776655444433111 11112223344444455566778888999996 67777777788899999999999
Q ss_pred HhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhh-
Q 015813 200 ILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLN-VRGSDHMLAVLVGLFSSITGGISYCLIKAG- 277 (400)
Q Consensus 200 ~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~- 277 (400)
++|+|.+.+|+..+++.-+|+++....+..+... ...+-+.++. .....-..|+.+..++-+..|.-.+.+...
T Consensus 112 l~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~----~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y 187 (330)
T KOG1583|consen 112 LLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS----KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTY 187 (330)
T ss_pred hccceeehhhhhhHHhhhhhheeEEeecCcchhh----hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876544332110 0000011111 111234457666666666666555544332
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHH----------hhcCccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015813 278 ANASDQPLVTVFSFGILASPAAGICLF----------FFEEFVLP-----SFYSFLLMLVLSILAFFAEVLLARGLQLEK 342 (400)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-----~~~~~~~l~~~gv~~~~~~~~~~~al~~~~ 342 (400)
.|.+.++...++|.-...++.++...- ..+....| -+..|.+++.-.+.-...---.+..-.+..
T Consensus 188 ~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~ 267 (330)
T KOG1583|consen 188 QKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETS 267 (330)
T ss_pred HHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceec
Confidence 222345667788888888777665431 01111111 345666665544443222222333345667
Q ss_pred ccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHH
Q 015813 343 TSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 343 a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~ 389 (400)
+-.++++..+.-.++.+++.+.++.++++..++|..+++.|.++...
T Consensus 268 sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 268 SLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred ceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999887664
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.3e-07 Score=84.70 Aligned_cols=273 Identities=19% Similarity=0.130 Sum_probs=170.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHH
Q 015813 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLS 166 (400)
Q Consensus 87 ~~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (400)
.+...|.++.+.+.++.+....+.|... .+... . -.+.+...++..+. +.+..+.+...++
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl-~r~~~---~--------------~~ra~~gg~~yl~~-~~Ww~G~ltm~vG 77 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGL-KRAGA---S--------------GLRAGEGGYGYLKE-PLWWAGMLTMIVG 77 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHH-HHHhh---h--------------cccccCCCcchhhh-HHHHHHHHHHHHH
Confidence 3456788899999999999888888743 11110 0 01111111111111 3344556667788
Q ss_pred HHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCccccc
Q 015813 167 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 246 (400)
Q Consensus 167 ~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (400)
..+-|.|+...|++..+++-.++.++..+++..+++||+++...+|.+++++|-.++.......+. -.+.+
T Consensus 78 ei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~---------i~t~~ 148 (335)
T KOG2922|consen 78 EIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE---------IESVE 148 (335)
T ss_pred hHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc---------cccHH
Confidence 888999999999999999999999999999999999999999999999999999877754422111 00000
Q ss_pred c----cCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH---------HH--HHhhcCccC
Q 015813 247 N----VRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAG---------IC--LFFFEEFVL 311 (400)
Q Consensus 247 ~----~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~ 311 (400)
+ ..+...+.- ...+... ..+-....|. ++. ......|..+++.+-.+ +. ....+..+.
T Consensus 149 el~~~~~~~~Fliy-~~~iil~--~~il~~~~~p---~~g-~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql 221 (335)
T KOG2922|consen 149 EVWELATEPGFLVY-VIIIILI--VLILIFFYAP---RYG-QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQL 221 (335)
T ss_pred HHHHHhcCccHHHH-HHHHHHH--HHHHheeecc---ccc-ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCccc
Confidence 0 111111111 1111111 1112222332 111 11222333333322110 11 112223344
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHh-hHHHHHHHHHHHHhcccCc------hhhhhhhHHHHHHH
Q 015813 312 PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPS------FGRLVGCVLILVSV 384 (400)
Q Consensus 312 ~~~~~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~-~~pv~a~i~~~l~l~e~~~------~~~~~G~~li~~g~ 384 (400)
..+..|..++.+..+...-....++|++..+++.++++.| +--.++++-+.++++|.-. ...+.|+..++.|+
T Consensus 222 ~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~ 301 (335)
T KOG2922|consen 222 FYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGI 301 (335)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhee
Confidence 4567787777777777777888999999999999998888 6677888999999998532 23578999999999
Q ss_pred HHHHHcCCcc
Q 015813 385 FYTMYIGPEK 394 (400)
Q Consensus 385 ~~~~~~~~~~ 394 (400)
.++...++++
T Consensus 302 flL~~~kd~~ 311 (335)
T KOG2922|consen 302 FLLHRTKDME 311 (335)
T ss_pred eEeeeecccc
Confidence 9886655443
No 63
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.56 E-value=7e-07 Score=84.34 Aligned_cols=192 Identities=18% Similarity=0.080 Sum_probs=142.5
Q ss_pred CCCCccccccccccCCCCcccccccccCCCCCcccccccccccchhhhhh------------ccCcchHHHHHHHHHHHH
Q 015813 35 GGTASDEISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWV------------WNGSRYSGLMCMALSSTI 102 (400)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~G~ll~l~a~~~ 102 (400)
-++|+-....+++...-|..-.+|.-..++|-+..+..+......|+..+ -+.++.+|.++++.++++
T Consensus 100 ~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~l 179 (334)
T PF06027_consen 100 YQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAIL 179 (334)
T ss_pred hhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHH
Confidence 35555666667777777777777877778877777655554444444421 124678999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC---CcC-chhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 015813 103 YFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP---IFG-PMHARNLLVLRALVGFLSLFSFVYSIQRLP 178 (400)
Q Consensus 103 ~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 178 (400)
++.++++.+... ++.+..+...+-.+++.++..+.+....+. ... ..+.....+...++.+..+.+.-..+++.+
T Consensus 180 ya~~nV~~E~~v-~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ss 258 (334)
T PF06027_consen 180 YAVSNVLEEKLV-KKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSS 258 (334)
T ss_pred HHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999886 788999998888888888776654422221 111 122233334444555666667778899999
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 179 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 179 ~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
++...+=.-+..++++++..+++|++++|..++|.+++++|+++....+
T Consensus 259 At~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 259 ATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred cceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 9988888888999999999999999999999999999999999886544
No 64
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.54 E-value=1.9e-06 Score=77.96 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccC-----CCHHHHHHHHHHHHHHH
Q 015813 254 MLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL-----PSFYSFLLMLVLSILAF 328 (400)
Q Consensus 254 ~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~ 328 (400)
..|+++++.+-+.|+....+.|-+. ..+......+-.+-+.++..+......++.. -+++.+......+++-.
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll~--~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLLE--PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3699999999999999999999864 4667788888888888888777766655542 36677878788888778
Q ss_pred HHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcC
Q 015813 329 FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 391 (400)
Q Consensus 329 ~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~ 391 (400)
.-...|.|+.+......++.--+++|.+.+++|.++++|+++..|++..++..+|+....+..
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999998877653
No 65
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.51 E-value=3.8e-06 Score=74.14 Aligned_cols=134 Identities=14% Similarity=0.048 Sum_probs=110.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHH-HHHHHHHHHHHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARN-LLVLRALVGFLSL 167 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 167 (400)
...|..+.+.+..||+.|-+..|.+. +..+.-.-+..-++++.++.+|+-..........+.... .+..+.+...+-|
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g-~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAG-RAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhc-ccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence 35799999999999999999999875 577777888888999999998887655544444444333 3344445556888
Q ss_pred HHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhh
Q 015813 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (400)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 223 (400)
.+-..++++.|...-+++.++.|.+..+.++++++|++++.||+++..++.+..-.
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998887633
No 66
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.50 E-value=9.7e-07 Score=70.51 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCc
Q 015813 315 YSFLLMLVLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 393 (400)
Q Consensus 315 ~~~~~l~~~gv~~-~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~ 393 (400)
+.|.+.+..|+++ ..++.++.+++++.+ ..++.+..+.|+++.++++++++|+++..+++|.+++++|++++.+.+.+
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4456677777777 599999999999999 48889999999999999999999999999999999999999999887644
No 67
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.42 E-value=5.5e-06 Score=65.70 Aligned_cols=66 Identities=15% Similarity=0.015 Sum_probs=61.0
Q ss_pred HHHH-HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHH
Q 015813 324 SILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 324 gv~~-~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~ 389 (400)
++++ ++++.++..++++.+.+++..+.++.++++.+++++++||++++.+++|.++++.|+.++..
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3344 78999999999999999999999999999999999999999999999999999999988754
No 68
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=98.23 E-value=0.0019 Score=60.30 Aligned_cols=289 Identities=12% Similarity=0.083 Sum_probs=179.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC------cCchhHHHHHHHHHH
Q 015813 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLRAL 161 (400)
Q Consensus 88 ~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~------~~~~~~~~~~~~~~~ 161 (400)
+-..|+++..+.+++-+...+-.|+. ++.+-...=....+++.+++..+.....-+. ..+.+.....++.|+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv--k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV--KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc--CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 44579999999999999999999984 5665555555555566554433322211111 122345666777788
Q ss_pred HHHHHHHHHHHHHhccchhhHHHH-HhhHHHHHHHHHHHHhc-------CcCcHHHHHHHHHHHHhhhhhhccccccccc
Q 015813 162 VGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILR-------EKLKIAEIGGLALSFFGVLFIFRRILTTQAV 233 (400)
Q Consensus 162 ~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~ll~~~~l~-------e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~ 233 (400)
...++...|-.+++|++.+...-+ ..+.-++..++-.++.+ .+-...-++|++++++|+.+....+..-+.
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~- 160 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK- 160 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh-
Confidence 888999999999999988887554 56777777777666544 233456799999999999998876543221
Q ss_pred cCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc-------CCCChHHHH----HHHHHHHHHHHHHH
Q 015813 234 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-------ASDQPLVTV----FSFGILASPAAGIC 302 (400)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~-------~~~~~~~~~----~~~~~~~~~~~~~~ 302 (400)
+. .++..+.+--+|.++++++.+..|..+.-...... ...++.... ......+.+.-++.
T Consensus 161 --------~~-~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~y 231 (344)
T PF06379_consen 161 --------EL-GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIY 231 (344)
T ss_pred --------hh-ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHH
Confidence 11 11122234568999999999999988874433111 111111111 11112222222232
Q ss_pred HHhh----cCcc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc----chhhhHhhHHHHHHHHHHHHh
Q 015813 303 LFFF----EEFV---------LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTS----KVANVQYIEVALTQLWGMGLS 365 (400)
Q Consensus 303 ~~~~----~~~~---------~~~~~~~~~l~~~gv~~~~~~~~~~~al~~~~a~----~~s~~~~~~pv~a~i~~~l~l 365 (400)
.+.. .++. ++-...+..-+..|++-...+.+|-++-.+.++. --.+.+.+..+++-++|.+ +
T Consensus 232 c~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-l 310 (344)
T PF06379_consen 232 CLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-L 310 (344)
T ss_pred HHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-H
Confidence 2211 1121 1113445555666666678888888888888754 3347788899999999965 6
Q ss_pred cccC------chhhhhhhHHHHHHHHHHHH
Q 015813 366 RIAP------SFGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 366 ~e~~------~~~~~~G~~li~~g~~~~~~ 389 (400)
+|.= -..-++|+++++.++.++-+
T Consensus 311 kEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 311 KEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 8842 23347888888887776643
No 69
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.16 E-value=4.9e-05 Score=69.24 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=95.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHH
Q 015813 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL 167 (400)
Q Consensus 88 ~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (400)
+..+|++..+++.+.+..+.+..|. .+.++....+=...-..+-...+.... ++.... +..+.-.+.|+...+++
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~---~~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~-k~~~~nil~G~~w~ign 209 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKA---FHVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFE-KKSWKNILTGLIWGIGN 209 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh---cCCChhHhHHHHHHHHHHHHHHHhhcc-cccccc-cchHHhhHHHHHHHHHH
Confidence 3467999999999999999999997 457887776644433333333332222 222222 33455677899999999
Q ss_pred HHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHH----HHHHHHHhhh
Q 015813 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIG----GLALSFFGVL 221 (400)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~----g~~l~~~Gv~ 221 (400)
.+++.+.+..+.+.+-.+..+.+++..+-+.+++||+-+++++. |+++.++|.+
T Consensus 210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999988764 4444444443
No 70
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.13 E-value=9.9e-05 Score=69.73 Aligned_cols=136 Identities=19% Similarity=0.243 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHh--hCCCC------cCchhHHHHHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRR--SGQPI------FGPMHARNLLVLRALV 162 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~l~l~~~~~~--~~~~~------~~~~~~~~~~~~~~~~ 162 (400)
|+++++++.++-+...+..+... ..+.++.+.+++....+.++..+.... .+... ...++....+++..++
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999886 457899999999999998877766555 22211 1122355667778888
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 163 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
..+++.+.++-.++.++...+++..+--+++.+++.+++++++++.+|.|+++.+.|..+=..++
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~ 299 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAK 299 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence 88999999999999999999999999999999999999999999999999999999998866544
No 71
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=98.04 E-value=0.00024 Score=58.67 Aligned_cols=130 Identities=19% Similarity=0.289 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHhhCCC-CcCchhHHHHHHHHHHHHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQP-IFGPMHARNLLVLRALVGFLSLFS 169 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 169 (400)
..++.+++..+-+....+.-.+. +..+ |....++.+..+.+.+..+....+++ ....++..++.+++|+.+.....+
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~-~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~ 80 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLG-KALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLS 80 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHH
Confidence 35678888888888888887775 5565 99999999999998877766554442 222234456677799999999999
Q ss_pred HHHHHhccchhhHHHHHhhHHHHHH-HHHHH----HhcCcCcHHHHHHHHHHHHhhhh
Q 015813 170 FVYSIQRLPLSQATVLSFTAPIMAS-IAARI----ILREKLKIAEIGGLALSFFGVLF 222 (400)
Q Consensus 170 ~~~al~~~~~~~a~~l~~~~P~~~~-ll~~~----~l~e~~~~~~~~g~~l~~~Gv~l 222 (400)
..+...+++++.+..+.-..-++.. ++.++ .-++++++.+++|+.+.++|+.+
T Consensus 81 ~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 81 NIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999888665555544 44554 35689999999999999999864
No 72
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.01 E-value=0.0002 Score=56.17 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhh
Q 015813 154 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 223 (400)
.......+....++++...+++++|.+.+-.+ ....-+.+.+.+.+++||++++.|++|+.+++.|++.+
T Consensus 36 ~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 36 IYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 33455577778899999999999999999776 56889999999999999999999999999999999886
No 73
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.97 E-value=6.7e-05 Score=59.93 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHH-hhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 156 LVLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
..+..++...+++++..+++++|.+.+-.+. .+.-+.+.+++.+++||++++.+++|+.++++|++++...+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3456777888999999999999999998885 69999999999999999999999999999999998886443
No 74
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.92 E-value=0.00011 Score=57.95 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcc
Q 015813 156 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 226 (400)
.....++..+++.++..+++++|.+.+-.+ ..+.-+.+.+++++++||++++.+++|+.++++|++++...
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345577778889999999999999999887 56899999999999999999999999999999999998643
No 75
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.89 E-value=0.00011 Score=56.73 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcc
Q 015813 154 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 226 (400)
+..++..++...++.+.-.+++++|.+.+-.+ .....+.+.+.+++++||++++.+++|+.+.++|++.+...
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 34455567778899999999999999999766 67999999999999999999999999999999999987543
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.88 E-value=7.7e-05 Score=59.60 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcccCccchhhh-HhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCcc
Q 015813 327 AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 394 (400)
Q Consensus 327 ~~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 394 (400)
-+++++++..++|+.+.+.+=.+ ..+..+.+.++++++++|++++.+++|..+|+.|++.+....+++
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~ 108 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKA 108 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 38899999999999998776555 568899999999999999999999999999999999998766544
No 77
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.84 E-value=0.0002 Score=55.89 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhh
Q 015813 154 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
.......++...++++...+++++|.+.+-.+ ..+.-+.+.+++.+++||++++.+++|+.+.++|++.+.
T Consensus 30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 33444577778899999999999999999776 559999999999999999999999999999999999874
No 78
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.80 E-value=0.00025 Score=67.21 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHH---------hhcCccCCCHHHHHHHHHH
Q 015813 253 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLF---------FFEEFVLPSFYSFLLMLVL 323 (400)
Q Consensus 253 ~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~ 323 (400)
...|+++++++++|++..++-.|+ .|.- .+... |. +.+....++..+ ..+..+..+...+..-+..
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w--~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKW--SWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCC--chhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 568999999999999999999998 4322 22222 22 222211111111 1122334567778888888
Q ss_pred HHHHHHHHHHHHHHhcccCccchhhhHh-hHHHHHHHHHHHHhcccC---c----hhhhhhhHHHHHHHHHHHH
Q 015813 324 SILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAP---S----FGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 324 gv~~~~~~~~~~~al~~~~a~~~s~~~~-~~pv~a~i~~~l~l~e~~---~----~~~~~G~~li~~g~~~~~~ 389 (400)
|++-.+++..+..++|+.+.++.-.+.. ++-+++.+++.+++||.. + ..-++|.+++++|+.+..+
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999887776 999999999999999754 2 2358899999999999988
No 79
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.77 E-value=0.0001 Score=57.96 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015813 98 LSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 177 (400)
Q Consensus 98 ~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 177 (400)
+.+++||.++.++|... ++.++..-.. +..-....+ . . .+.+.+.-...-.+...|++.+.+.
T Consensus 3 ~Vg~~WG~Tnpfik~g~-~~~~~~~~~~-~~~~~~~~L-----l---------~-n~~y~ipf~lNq~GSv~f~~~L~~~ 65 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGS-SGLEKVKASL-QLLQEIKFL-----L---------L-NPKYIIPFLLNQSGSVLFFLLLGSA 65 (113)
T ss_pred eehHHhcCchHHHHHHH-hhcCCccchH-HHHHHHHHH-----H---------H-hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45688999999999986 4443333221 322111110 0 0 1223334455567788899999999
Q ss_pred chhhHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhh
Q 015813 178 PLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (400)
Q Consensus 178 ~~~~a~~l-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 223 (400)
+.+.+.++ +.+.=++|++.++++.+|..+++.++|+.+++.|+.+.
T Consensus 66 dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 66 DLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred CceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99999999 47888999999988777888999999999999999764
No 80
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.71 E-value=2e-05 Score=69.42 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 015813 256 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA 335 (400)
Q Consensus 256 G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~ 335 (400)
..+.+|+-++.|+..-....+.. ..|.......++.++++..+..+. .-..++...+..-+..|.+-.++|..++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~G---G~p~qQ~lGtT~GALifaiiv~~~--~~p~~T~~~~iv~~isG~~Ws~GQ~~Qf 77 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFG---GKPYQQTLGTTLGALIFAIIVFLF--VSPELTLTIFIVGFISGAFWSFGQANQF 77 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecC---CChhHhhhhccHHHHHHHHHHhee--ecCccchhhHHHHHHhhhHhhhhhhhhh
Confidence 56888999999988777666643 224444445555555554444333 1223466677777777888899999999
Q ss_pred HHhcccCccchhhhHh-hHHHHHHHHHHHHhcccCchhh----hhhhHHHHHHHHHHHHcCCcccccc
Q 015813 336 RGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGR----LVGCVLILVSVFYTMYIGPEKEMND 398 (400)
Q Consensus 336 ~al~~~~a~~~s~~~~-~~pv~a~i~~~l~l~e~~~~~~----~~G~~li~~g~~~~~~~~~~~~~~~ 398 (400)
++++..+.+++.++.. ++-+-+.++|++++||..+..+ .++.++++.|+++..++++.+++++
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~ 145 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEE 145 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccccc
Confidence 9999999999998877 8899999999999999988776 4466778888888888776555443
No 81
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.68 E-value=0.00027 Score=55.72 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcccCccchhhh-HhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCC
Q 015813 328 FFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 328 ~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
.+++.++..++++.+.+.+=.+ .-+..+.+.++++++++|++++.+++|+.+|+.|++.++..++
T Consensus 41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 7888999999999998766544 5688889999999999999999999999999999999977554
No 82
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.66 E-value=0.00059 Score=56.33 Aligned_cols=129 Identities=15% Similarity=0.049 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCC---HHHHHHHHHHHHHHHHHHH
Q 015813 256 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPS---FYSFLLMLVLSILAFFAEV 332 (400)
Q Consensus 256 G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~ 332 (400)
..++++++..+-++...+..++.++..++....+.....+.+...+......+.+... ...|.++ -|+++.+...
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l--GG~lG~~~V~ 79 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYL--GGLLGVFFVL 79 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhc--cHHHHHHHHH
Confidence 3567888888888888888887765554666666666777777666666554433222 2223332 5677888888
Q ss_pred HHHHHhcccCccchhhhHh-hHHHHHHHHHHH----HhcccCchhhhhhhHHHHHHHHH
Q 015813 333 LLARGLQLEKTSKVANVQY-IEVALTQLWGMG----LSRIAPSFGRLVGCVLILVSVFY 386 (400)
Q Consensus 333 ~~~~al~~~~a~~~s~~~~-~~pv~a~i~~~l----~l~e~~~~~~~~G~~li~~g~~~ 386 (400)
+..+.+++.+++....+.. -|-+.+.+++.+ .-++++++.+++|..+++.|+.+
T Consensus 80 ~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 80 SNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999977776555 788888888886 34468999999999999999763
No 83
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.61 E-value=0.00021 Score=66.90 Aligned_cols=139 Identities=17% Similarity=0.262 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHH-HHHHhhCCCCc------CchhHHHHHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFM---VQSIPLFETVFMRCTVTLILSY-LWLRRSGQPIF------GPMHARNLLVL 158 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~---~~~~~~~~~~~~r~~~~~l~l~-~~~~~~~~~~~------~~~~~~~~~~~ 158 (400)
...|.+.++.+.+..++.+++.|... ..+++++++..+..-++.++++ |+......... ...-.....+.
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 56799999999999999999999987 3469999999999999988888 87554332221 11111222333
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 159 RALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 159 ~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
..++.+..+...|..+.++++..-++....-=+++...++++++++.++.+.+|.+++++|+++=.+-+
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 337777778888999999999999999888888888899999999999999999999999998865443
No 84
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.58 E-value=0.00021 Score=67.09 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=89.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHHHHH
Q 015813 251 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFA 330 (400)
Q Consensus 251 ~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 330 (400)
.+...|.++++.++++.+....+.|+..++.+.. .. .. .....+...+..|..++. +..++
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~-~~--~~---------------~~~~~~~l~~~~W~~G~~-~~~~g 63 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRG-SL--RA---------------GSGGRSYLRRPLWWIGLL-LMVLG 63 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc--cc---------------cchhhHHHhhHHHHHHHH-HHhcc
Confidence 3467899999999999999999999855432210 00 00 000001112222222221 12567
Q ss_pred HHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCc
Q 015813 331 EVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 393 (400)
Q Consensus 331 ~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~ 393 (400)
..+.+.++...+++.++++..+..++..+++..+++|+++..+++|+++++.|..+......+
T Consensus 64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~ 126 (300)
T PF05653_consen 64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPK 126 (300)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCC
Confidence 778889999999999999999999999999999999999999999999999999877655443
No 85
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.47 E-value=8.9e-05 Score=66.12 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCc-CchhHHHHHHHHHHHHHHHHH
Q 015813 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIF-GPMHARNLLVLRALVGFLSLF 168 (400)
Q Consensus 90 ~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (400)
.+|....+.++++-+...+..|.+. ++.+......+-.+++.+..++.+..-+...+ .-.+.|+..+..|+++++++.
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iG-k~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQI 268 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIG-KNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQI 268 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhh-ccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHH
Confidence 4567788888888888889999986 88888888888888888777776665543322 223455666777999999999
Q ss_pred HHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcc
Q 015813 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (400)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 226 (400)
+...++|.--++..++...+..+|..+...+|++|.|++..|.|.++++...+.....
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~ 326 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK 326 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888777665543
No 86
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.0029 Score=57.81 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC------cCchhHHHHHHHHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLRAL 161 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~------~~~~~~~~~~~~~~~ 161 (400)
...|+.++....++=|+.+...+.+. ...++++++.+.-.+...+.........+... ...++.++.+++-..
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence 45699999999999999999888876 34789999999999988887666543333221 123567788999999
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhh
Q 015813 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
+++.++.+.++-+++-++-.-+.++-+--++..+++.+.++.++++.||+|+.+.+.|+.+=.
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI 312 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987644
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.37 E-value=0.0025 Score=48.79 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 015813 156 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALS 216 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~ 216 (400)
......+...+++++..+++++|.+.+-.+ ..+..+.+.+++.+++||++++.|++|+.++
T Consensus 32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 334455778889999999999999999776 4699999999999999999999999999863
No 88
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.37 E-value=0.0023 Score=60.06 Aligned_cols=142 Identities=13% Similarity=0.005 Sum_probs=108.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHH---hhCCCC---cCchhHHHHHHH
Q 015813 88 SRYSGLMCMALSSTIYFFMQVISDVFMV---QSIPLFETVFMRCTVTLILSYLWLR---RSGQPI---FGPMHARNLLVL 158 (400)
Q Consensus 88 ~~~~G~ll~l~a~~~~~~~~~~~k~~~~---~~~~~~~~~~~r~~~~~l~l~~~~~---~~~~~~---~~~~~~~~~~~~ 158 (400)
+...|.++++++++.++.+.++.|.-.. +.++--.+..+-.++..+++.|.+. ..+.+. +...+....++.
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 4578999999999999999999998652 2466666666667777777665433 222221 122233334555
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccc
Q 015813 159 RALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT 229 (400)
Q Consensus 159 ~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~ 229 (400)
+.+..+++-++|.+|.-.+++-.+++-..+..-..++.-.++-+.++++..++|...+++|.+++..++..
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 66777789999999999999999999888887788888888889999999999999999999999887644
No 89
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.0014 Score=50.68 Aligned_cols=64 Identities=25% Similarity=0.084 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcccCccc-hhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcC
Q 015813 328 FFAEVLLARGLQLEKTSK-VANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 391 (400)
Q Consensus 328 ~~~~~~~~~al~~~~a~~-~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~ 391 (400)
.+++.+...++|+.+.+. .++..-+-.+.+.+.|+++++|++++.+++|..+++.|++.++...
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 788999999999998754 4677778999999999999999999999999999999999887643
No 90
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.23 E-value=0.0022 Score=50.03 Aligned_cols=64 Identities=19% Similarity=0.102 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcccCccc-hhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHc
Q 015813 327 AFFAEVLLARGLQLEKTSK-VANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 390 (400)
Q Consensus 327 ~~~~~~~~~~al~~~~a~~-~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~ 390 (400)
-.+++++...++|+.+.+. .++..-+..+.+.+.++++++|++++.+++|+.+++.|++.++..
T Consensus 39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 3889999999999998755 456666889999999999999999999999999999999988643
No 91
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.20 E-value=0.002 Score=50.61 Aligned_cols=62 Identities=19% Similarity=0.031 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcccCccch-hhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHH
Q 015813 327 AFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 388 (400)
Q Consensus 327 ~~~~~~~~~~al~~~~a~~~-s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~ 388 (400)
-.+++++...++|+.+.+.+ ++..-+..+.+.+.++++++|++++.+++|..+|+.|++.++
T Consensus 45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 37899999999999997554 566668889999999999999999999999999999998874
No 92
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.0089 Score=49.44 Aligned_cols=135 Identities=11% Similarity=-0.022 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCC----HHHHHHHHHHHHHHH
Q 015813 253 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPS----FYSFLLMLVLSILAF 328 (400)
Q Consensus 253 ~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gv~~~ 328 (400)
.+...++++++..+-.+..-+..++.+...++....+.....+.+.+.+.....+....+. ...|.++ -|+++.
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~--GG~lGa 80 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWI--GGLLGA 80 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHH--ccchhh
Confidence 3467888999999999999988888775566767677666777666666555543322221 1223332 235665
Q ss_pred HHHHHHHHHhcccCcc-chhhhHhhHHHHHHHHHHHHhc----ccCchhhhhhhHHHHHHHHHHHH
Q 015813 329 FAEVLLARGLQLEKTS-KVANVQYIEVALTQLWGMGLSR----IAPSFGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 329 ~~~~~~~~al~~~~a~-~~s~~~~~~pv~a~i~~~l~l~----e~~~~~~~~G~~li~~g~~~~~~ 389 (400)
+--........+.+++ .......-|-+.+++++.+=+. .+++...++|++++++|+++...
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 5556666777888764 4555666888888888876555 57899999999999999555433
No 93
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.12 E-value=0.0039 Score=55.97 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH----HHHHHHHHHHHhhCCCC---cC-chhHHHHHHHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCT----VTLILSYLWLRRSGQPI---FG-PMHARNLLVLRA 160 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~----~~~l~l~~~~~~~~~~~---~~-~~~~~~~~~~~~ 160 (400)
...|..+.+.++.+-++..+..+... +.-+.. ...|.. ...+............. .. -.+.....+...
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~-k~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKIL-KDGDTM--FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG 159 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcc-cCCCCc--hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence 34577778888888888888877764 322111 111111 11111111111111110 00 011122233344
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhh
Q 015813 161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (400)
Q Consensus 161 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l 222 (400)
+....+..+..+.+++.+....+....+.++++.+++.++++|+++..+++|+.+++.|+.+
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 66677778889999999999999999999999999999999999999999999999998753
No 94
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.034 Score=46.00 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHHHHHHh-hCCCCcC-chhHHHHHHHHHHHHHHH
Q 015813 90 YSGLMCMALSSTIYFFMQVISDVFMVQSI-PLFETVFMRCTVTLILSYLWLRR-SGQPIFG-PMHARNLLVLRALVGFLS 166 (400)
Q Consensus 90 ~~G~ll~l~a~~~~~~~~~~~k~~~~~~~-~~~~~~~~r~~~~~l~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (400)
...++..+.+..+-...+.+.-.+. +.. +|+...+..+..+.+.+..+... ++++... .++..++.+.+|+.+...
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~-~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~ 82 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLA-RYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence 3467778888888888888877665 444 59999999999887766655444 2222221 133345667777777777
Q ss_pred HHHHHHHHhccchhhHHHH-HhhHHHHHHHHHHHH-h---cCcCcHHHHHHHHHHHHhhhhhh
Q 015813 167 LFSFVYSIQRLPLSQATVL-SFTAPIMASIAARII-L---REKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 167 ~~~~~~al~~~~~~~a~~l-~~~~P~~~~ll~~~~-l---~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
-..-.....+++++....+ ..-+-+...++..+= + ++++++.+++|+++.++|++++-
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 7777777888877777665 445555555555442 2 47899999999999999955543
No 95
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.86 E-value=0.0097 Score=45.49 Aligned_cols=53 Identities=19% Similarity=0.061 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcccCccch-hhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHH
Q 015813 328 FFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI 380 (400)
Q Consensus 328 ~~~~~~~~~al~~~~a~~~-s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li 380 (400)
.+++.++..++|+.+.+.+ ++..-+..+...+.+.+++||++++.+++|+.+|
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 7888999999999999888 4455689999999999999999999999999876
No 96
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.86 E-value=0.022 Score=51.80 Aligned_cols=180 Identities=11% Similarity=0.053 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (400)
|++..+++++++|.+.+=.|.. +..|++..-++.+....+.-+.+...++.+ +...+..++|...+.++.+-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-----~f~p~amlgG~lW~~gN~~~v 73 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVVNLILGFP-----PFYPWAMLGGALWATGNILVV 73 (254)
T ss_pred CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeHHHhhhhhhhcCceeeh
Confidence 5678999999999999999984 566887777776666665555554444432 235667888999999999999
Q ss_pred HHHhccchhhHHHHHhhHHHHHHHH-HHH-HhcCc-----CcHHHHHHHHHHHHhhhhhhccccccc----ccc-CCCcC
Q 015813 172 YSIQRLPLSQATVLSFTAPIMASIA-ARI-ILREK-----LKIAEIGGLALSFFGVLFIFRRILTTQ----AVS-GGLVK 239 (400)
Q Consensus 172 ~al~~~~~~~a~~l~~~~P~~~~ll-~~~-~l~e~-----~~~~~~~g~~l~~~Gv~l~~~~~~~~~----~~~-~~~~~ 239 (400)
-.++.++.+....+.+..-+++--. +++ +++++ -.+...+|++++++|..+...-+.... ... .....
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~ 153 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSI 153 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCcccccccccccc
Confidence 9999999999999987755555444 443 45432 345678999999999887654322110 000 00000
Q ss_pred C-Cc-c------ccccc------CCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015813 240 P-GE-A------ISLNV------RGSDHMLAVLVGLFSSITGGISYCLIKAGA 278 (400)
Q Consensus 240 ~-~~-~------~~~~~------~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~ 278 (400)
+ .+ . ..++. ....+..|..+++++++.|+...+=..+..
T Consensus 154 ~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~ 206 (254)
T PF07857_consen 154 EDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQ 206 (254)
T ss_pred ccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHH
Confidence 0 00 0 00000 112478899999999999999888666644
No 97
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.79 E-value=0.0048 Score=56.22 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCcc
Q 015813 315 YSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 394 (400)
Q Consensus 315 ~~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 394 (400)
.+...+..=+++=.+...+.+.++++.+|+...++..+..+++.++.+++++++++..||++..+.+.|+.+........
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 34444444445557888999999999999999999999999999999999999999999999999999999988776544
No 98
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.71 E-value=0.0068 Score=47.71 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 015813 262 FSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLE 341 (400)
Q Consensus 262 ~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~al~~~ 341 (400)
+-+++|++.+-+.|+..+..++..... +....... -...|-+++.. ++...+-..|++.+.+.
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~--~~~~~~~~--------------Ll~n~~y~ipf-~lNq~GSv~f~~~L~~~ 65 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASL--QLLQEIKF--------------LLLNPKYIIPF-LLNQSGSVLFFLLLGSA 65 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchH--HHHHHHHH--------------HHHhHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 457889999999999776444333321 11111100 11223333322 22477888899999999
Q ss_pred CccchhhhH-hhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHH
Q 015813 342 KTSKVANVQ-YIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 386 (400)
Q Consensus 342 ~a~~~s~~~-~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~ 386 (400)
+-+.+.++. .+.-+++++.++++.+|..+...++|+.+|+.|+.+
T Consensus 66 dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 66 DLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred CceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 999999885 799999999999888888888999999999999865
No 99
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.017 Score=50.81 Aligned_cols=136 Identities=13% Similarity=0.017 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC------cCchhHHHHHHHHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLRAL 161 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~~-~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~------~~~~~~~~~~~~~~~ 161 (400)
...|-++.+++...=|+.......+-. -.-+..++.+...+-+.+.+..-....+.-+ .+.+..++.+.+.++
T Consensus 170 ~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai 249 (337)
T KOG1580|consen 170 FGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI 249 (337)
T ss_pred cchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 446788888888888888877665531 1223455666666666555443222222110 011345666777899
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhh
Q 015813 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
++++++.+.+.-+.+-++-..+++..+--+|+++.+.++++.+++.+||+|..+.+.|...=.
T Consensus 250 ~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 250 ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 999999999999999999999999999999999999999999999999999999999986644
No 100
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.036 Score=51.34 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC--------CcCchhHHHHHHHHH
Q 015813 90 YSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQP--------IFGPMHARNLLVLRA 160 (400)
Q Consensus 90 ~~G~ll~l~a~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~--------~~~~~~~~~~~~~~~ 160 (400)
..|+.+++..+++-+...+..|+-. ..+.+-+.++++..+.+.+.+.......+.. .+.....+..+.+.+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 3489999999999999999999864 3567888999999999988877766444331 122234456788889
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 161 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
++++.-.++-+++.+..|+..-++.-...-..+.+...++.+++.++..++|+.++++|-++=.+..
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 9999999999999999999988888877777777777778889999999999999999987765544
No 101
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.69 E-value=0.075 Score=46.57 Aligned_cols=137 Identities=9% Similarity=0.083 Sum_probs=108.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcC------chhHHHHHHHHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG------PMHARNLLVLRAL 161 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~------~~~~~~~~~~~~~ 161 (400)
.+.|++++...++.-+..-...|.-. ..+.--+...++..+++.++++.+-....++... +.+...++++.|+
T Consensus 153 lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl 232 (309)
T COG5070 153 LNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL 232 (309)
T ss_pred cCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH
Confidence 45688888888888887777777643 2456678899999999998888776544433222 2344567888899
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhc
Q 015813 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (400)
Q Consensus 162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~ 225 (400)
+.+.-.+|--|.++-++.+.-+.+-.+.-.-..+.+.++++|+.+...+..+++++...++-..
T Consensus 233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9988888999999999999999999998888999999999999999999999999876655443
No 102
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.30 E-value=0.16 Score=47.83 Aligned_cols=142 Identities=11% Similarity=0.071 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHH-HHHHHHHHHHHHHHHh--hcCc----cCCCHHHHHHHHHHH
Q 015813 252 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVF-SFGILASPAAGICLFF--FEEF----VLPSFYSFLLMLVLS 324 (400)
Q Consensus 252 ~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~l~~~g 324 (400)
.-..|+++..+++++.+.+++=.||..+ = .+...+ .+.+++-++....... ..++ ...+...+......|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~--W-sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKG--W-SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCC--c-cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 3568999999999999999999998532 2 222222 2233332222221111 1111 122345566667788
Q ss_pred HHHHHHHHHHHHHhcccCccchh-hhHhhHHHHHHHHHHHHhcc-------cCchhhhhhhHHHHHHHHHHHHcCCcccc
Q 015813 325 ILAFFAEVLLARGLQLEKTSKVA-NVQYIEVALTQLWGMGLSRI-------APSFGRLVGCVLILVSVFYTMYIGPEKEM 396 (400)
Q Consensus 325 v~~~~~~~~~~~al~~~~a~~~s-~~~~~~pv~a~i~~~l~l~e-------~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 396 (400)
++-.++-..|-.++|+.+.+... +..-+..+++.++--++.++ +-....++|.++.++|+.+.-+....|++
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~ 160 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK 160 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh
Confidence 88889999999999999976554 44446677777776665443 22346799999999999998877655554
No 103
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.0063 Score=56.19 Aligned_cols=127 Identities=18% Similarity=0.209 Sum_probs=95.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHH-H
Q 015813 250 GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-F 328 (400)
Q Consensus 250 ~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~-~ 328 (400)
+.++..|.++++.+++..+...++.|+..++... .. .-..++ ..+-..+ .+-+.|++. .
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~--------------~ra~~g-g~~yl~~--~~Ww~G~ltm~ 75 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SG--------------LRAGEG-GYGYLKE--PLWWAGMLTMI 75 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hc--------------ccccCC-Ccchhhh--HHHHHHHHHHH
Confidence 3567789999999999999999998886653221 00 000011 1111122 223556666 7
Q ss_pred HHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCcccc
Q 015813 329 FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEM 396 (400)
Q Consensus 329 ~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 396 (400)
++....+.+....+++.++++..++.++..+++..+++|++++...+|+++.++|..+++...+++++
T Consensus 76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 88888889999999999999999999999999999999999999999999999999888776665544
No 104
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.12 E-value=1.1 Score=42.37 Aligned_cols=137 Identities=13% Similarity=0.057 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC---CChHHHHHHHHHHHHHHHHHHHHhhc-----Ccc-C------CCHHHHHH
Q 015813 255 LAVLVGLFSSITGGISYCLIKAGANAS---DQPLVTVFSFGILASPAAGICLFFFE-----EFV-L------PSFYSFLL 319 (400)
Q Consensus 255 ~G~l~~l~aa~~~a~~~v~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~------~~~~~~~~ 319 (400)
.=.+..+...+..+......|+..+++ -.+....+..=+.-+++.....+... ++. . .++.+..-
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 344444555556666666777655433 12333333333444444444333321 111 0 12212222
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcC
Q 015813 320 MLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 391 (400)
Q Consensus 320 l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~ 391 (400)
+..=+++=.+-+-+++.++.+.+|+...+...+..+.+.++.+++++++++..||...++...|+.+++...
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 221122224555689999999999999999999999999999999999999999999999999999998443
No 105
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.19 E-value=1.1 Score=40.77 Aligned_cols=137 Identities=12% Similarity=0.155 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCc-------CchhHHHHHHHHHHH
Q 015813 91 SGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIF-------GPMHARNLLVLRALV 162 (400)
Q Consensus 91 ~G~ll~l~a~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 162 (400)
.|+.++-.+.++=+...-+....+ ...-+..+++++...++.++++......+.-.. .+.+.....++-++.
T Consensus 190 ~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~ 269 (367)
T KOG1582|consen 190 IGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLA 269 (367)
T ss_pred eeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHH
Confidence 466655555555555444444443 234566888899888888877665554443211 112334455666666
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 163 ~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
+.++..+..--++.-++..++.++..---++.+++++++.++++-....+.++++.|+++=..++
T Consensus 270 gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 270 GYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 66776666666677788899999999999999999999999999999999999999999988876
No 106
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=92.02 E-value=3.9 Score=38.01 Aligned_cols=135 Identities=17% Similarity=0.192 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHHH-hhCCCCc---------CchhHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFMVQ----SIPLFETVFMRCTVTLILSYLWLR-RSGQPIF---------GPMHARN 154 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~~~----~~~~~~~~~~r~~~~~l~l~~~~~-~~~~~~~---------~~~~~~~ 154 (400)
...|..++..+.++-|+-..+.+.+..+ .-+|+...+.-.-...+.+++... .++.... .....++
T Consensus 162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r 241 (349)
T KOG1443|consen 162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR 241 (349)
T ss_pred eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence 4568999999988888887777776511 124555555444433334444332 3332111 1111222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhh
Q 015813 155 L---LVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (400)
Q Consensus 155 ~---~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 223 (400)
. +.++|...+.--.+-+.-+.+++.-..++.--.-=+.+.+++..+.+|+++-..|.|..++..|+.+=
T Consensus 242 v~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 242 VIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 2 22233333333333355566777766666666667888899999999999999999999999999876
No 107
>PRK02237 hypothetical protein; Provisional
Probab=91.52 E-value=4.2 Score=31.55 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=37.7
Q ss_pred hhhHHH-HHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhc
Q 015813 179 LSQATV-LSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (400)
Q Consensus 179 ~~~a~~-l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~ 225 (400)
.+.+-. .-..+.+...+..+.+-|+||++.+++|..++++|+.++..
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 444433 34567777778899999999999999999999999988753
No 108
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=91.08 E-value=2.4 Score=32.55 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHH
Q 015813 96 MALSSTIYFFMQVISDVFMVQSIP------LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFS 169 (400)
Q Consensus 96 ~l~a~~~~~~~~~~~k~~~~~~~~------~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (400)
++..++.||..+.++|... .+++ .-...++|-.....+ .+.+.+--...-.+..+
T Consensus 8 lvaVgllWG~Tnplirrgs-~g~~~v~~~~~k~~~~lqe~~tl~l------------------~w~Y~iPFllNqcgSal 68 (125)
T KOG4831|consen 8 LVAVGLLWGATNPLIRRGS-LGWDKVKSSSRKIMIALQEMKTLFL------------------NWEYLIPFLLNQCGSAL 68 (125)
T ss_pred HHHHHHHHccccHHHHHHH-hhHhhccCchHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHhhHHH
Confidence 5667788999999999864 2221 122222222211110 11111222233345677
Q ss_pred HHHHHhccchhhHHHHH-hhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhh
Q 015813 170 FVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 170 ~~~al~~~~~~~a~~l~-~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
||.-+++.|.+.+..+. .+.-.|+.+.+..+-.|-...+.++|..+.++|+.+..
T Consensus 69 y~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 69 YYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 88889999999999985 46778888888775556667777999999999987653
No 109
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=91.04 E-value=0.3 Score=43.89 Aligned_cols=135 Identities=12% Similarity=0.031 Sum_probs=88.7
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCc-hhH-HHHHHHHHHHH
Q 015813 86 NGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGP-MHA-RNLLVLRALVG 163 (400)
Q Consensus 86 ~~~~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~ 163 (400)
+.++.+|..++++.+.+++.+++.-..+. ++.|-.++...-.+++.++..+=....+.+...- +++ ....+...++.
T Consensus 161 gsnp~~GD~lvi~GATlYaVSNv~EEflv-kn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~M 239 (336)
T KOG2766|consen 161 GSNPVKGDFLVIAGATLYAVSNVSEEFLV-KNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTM 239 (336)
T ss_pred CCCCccCcEEEEecceeeeeccccHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHH
Confidence 35678999999999999999999988875 8999999999999988888766544443332221 111 12222222222
Q ss_pred HHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhh
Q 015813 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (400)
Q Consensus 164 ~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 223 (400)
++-+.+.-.-++..+++...+-.-++-++..++ ..++-+..|.-.++......|.++-
T Consensus 240 FllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 240 FLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY 297 (336)
T ss_pred HHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence 222333333445555554444444455565555 5678889999999999999998765
No 110
>PRK02237 hypothetical protein; Provisional
Probab=91.03 E-value=1.3 Score=34.24 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=39.1
Q ss_pred hhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCC
Q 015813 347 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 347 s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
+...-.-.+.+.++++.+-+++|+...++|..+.++|+.++.+.+|
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 4455566778889999999999999999999999999988876654
No 111
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=90.52 E-value=0.087 Score=45.24 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCCcc
Q 015813 328 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 394 (400)
Q Consensus 328 ~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 394 (400)
..+.++|..++++.+|+.++.+.--+..|..+++++++++++....++...+.+.|++...+.++..
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 4567788899999999999999999999999999999999999999999999998887776655443
No 112
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=88.50 E-value=3 Score=32.22 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=40.9
Q ss_pred HhccchhhHHH-HHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcc
Q 015813 174 IQRLPLSQATV-LSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (400)
Q Consensus 174 l~~~~~~~a~~-l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 226 (400)
++-.+.+.+-. .-....+...+-.+.+-|+||++.+++|..++++|+.++...
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 44444444433 345677788888999999999999999999999999887653
No 113
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=87.30 E-value=1.2 Score=40.62 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 015813 256 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA 335 (400)
Q Consensus 256 G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~ 335 (400)
|.+.+++|+++|+...+=.|+... .| .....+++.....+...+..... +.... +.+-..-|.+-..+..+-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~-gD-g~~fQw~~~~~i~~~g~~v~~~~-~~p~f----~p~amlgG~lW~~gN~~~v 73 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT-GD-GFFFQWVMCSGIFLVGLVVNLIL-GFPPF----YPWAMLGGALWATGNILVV 73 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC-CC-cHHHHHHHHHHHHHHHHHHHHhc-CCCcc----eeHHHhhhhhhhcCceeeh
Confidence 567789999999999999998653 44 44545555444444444433332 22111 1111222233344555555
Q ss_pred HHhcccCccchhhhHh-hHHHHHHHHHHH-HhcccC-----chhhhhhhHHHHHHHHHHHHcCC
Q 015813 336 RGLQLEKTSKVANVQY-IEVALTQLWGMG-LSRIAP-----SFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 336 ~al~~~~a~~~s~~~~-~~pv~a~i~~~l-~l~e~~-----~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
-.+|..+-+..-.+=. .+-+.+-..+.+ ++|+.. .+..++|++++++|..+....|.
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~ 137 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKS 137 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecC
Confidence 5556665544443333 455555555543 455432 46679999999999888776543
No 114
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=87.06 E-value=1.9 Score=33.31 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=39.2
Q ss_pred hhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCC
Q 015813 347 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 347 s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
+...-.-.+.+.++++.+-+++|+...++|..+.+.|+.++.+.+|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 3445566778899999999999999999999999999998877654
No 115
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=86.49 E-value=0.9 Score=41.48 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHc
Q 015813 323 LSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 390 (400)
Q Consensus 323 ~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~ 390 (400)
=++|-..+-.+++.++....++-.-++.-...+|+.+++..+++.+++..||+|+..+.+|.+.+-..
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 34555888889999999999999999999999999999999999999999999999999998876544
No 116
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=85.66 E-value=8.7 Score=35.26 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHH---------hhCCCCcC-c-hhHHHHHH
Q 015813 90 YSGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLR---------RSGQPIFG-P-MHARNLLV 157 (400)
Q Consensus 90 ~~G~ll~l~a~~~~~~~~~~~k~~~~-~~~~~~~~~~~r~~~~~l~l~~~~~---------~~~~~~~~-~-~~~~~~~~ 157 (400)
..|+.+..++.+.-+.+.+.....+. .+-++-+.+|+.-++..++++.... ...++... . ........
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~ 242 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence 45888888888888888887766542 3568899999999888877665421 11110000 0 00011112
Q ss_pred HHHHHHHHHHHHHHHHHh----ccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcc
Q 015813 158 LRALVGFLSLFSFVYSIQ----RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (400)
Q Consensus 158 ~~~~~~~~~~~~~~~al~----~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 226 (400)
.-.++.++.+++...+.. .++.-++++...+-=.+..+++.+.++.+.++.+|+|..+.++|.++....
T Consensus 243 ~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 243 VYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223333444433333332 345555667777888999999999999999999999999999999876543
No 117
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=85.11 E-value=8 Score=29.73 Aligned_cols=41 Identities=12% Similarity=-0.048 Sum_probs=34.1
Q ss_pred HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcc
Q 015813 186 SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (400)
Q Consensus 186 ~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 226 (400)
-..+.+...+..+++-|.+|++.+++|..+|++|+.++...
T Consensus 65 GGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 65 GGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred cchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 34566667777888899999999999999999999877654
No 118
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=84.84 E-value=1.4 Score=33.77 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcccCccchhhhHh-hHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHH
Q 015813 327 AFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYT 387 (400)
Q Consensus 327 ~~~~~~~~~~al~~~~a~~~s~~~~-~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~ 387 (400)
+-++-.+|+.-+++.+-+.+..+.+ +.-.|+.++|..+-.|...-..++|..++++|+.+.
T Consensus 62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 4566777888889999888887766 788899999988766667788899999999998764
No 119
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=84.50 E-value=9.6 Score=29.42 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=37.2
Q ss_pred HHHhccchhhHHHHHhh-HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhh
Q 015813 172 YSIQRLPLSQATVLSFT-APIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 172 ~al~~~~~~~a~~l~~~-~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
.|.+..++++--+++-. .-.+-..++.+++||+++|.++.|.++.+.+++++.
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 34445566666565432 233335567889999999999999999888887654
No 120
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.03 E-value=1.4 Score=40.07 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHHhhCCC-------CcCchhHHHHHHHHH
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFMVQ-SIPLFETVFMRCTVTLILSYLWLRRSGQP-------IFGPMHARNLLVLRA 160 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~~~~-------~~~~~~~~~~~~~~~ 160 (400)
...|.++.+.+.++-+...+..|..... +-.-..+.++....+.++++|.....+.- +....+.|..+.++|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 3579999999999999999999975411 22346778888888988888887655431 222334456667777
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhc
Q 015813 161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (400)
Q Consensus 161 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~ 225 (400)
++++.-.+.-.+=++-+++-.-.+--..-..-=.+++..+++|..+...|-+-.+.+.|-..-.+
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHH
Confidence 77765555444445544443222222222233356778889999999999998888888765443
No 121
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=81.78 E-value=3.3 Score=31.75 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=38.0
Q ss_pred hhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCC
Q 015813 347 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 347 s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
+...-.-.+.+.++.+++-+.+|+...+.|..+.+.|..++.+.++
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 4455567788899999999999999999999999999777666544
No 122
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=81.42 E-value=43 Score=35.99 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=32.3
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhh
Q 015813 179 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (400)
Q Consensus 179 ~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~ 223 (400)
.+.+.++..+.|+-.+.++.....+|.+...+.+.+-.++|.+.+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 356778888999999999888877776555555655566666544
No 123
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.44 E-value=3.7 Score=31.06 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=28.4
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhc
Q 015813 194 SIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (400)
Q Consensus 194 ~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~ 225 (400)
+.++.+.+||+++|.++.+.++...|+.++.+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999999988764
No 124
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=78.50 E-value=13 Score=28.66 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=25.9
Q ss_pred HHHHHHHhcccCchhhhhhhHHHHHHHHHH
Q 015813 358 QLWGMGLSRIAPSFGRLVGCVLILVSVFYT 387 (400)
Q Consensus 358 ~i~~~l~l~e~~~~~~~~G~~li~~g~~~~ 387 (400)
..+++++++|++++.++.|.++++.+++++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 457788999999999999999999887654
No 125
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=78.15 E-value=0.69 Score=42.05 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhccchhhHHHHHhhHHHHHH--HHHHHHhcCcCcHHHHHHHHHHHHhhhhhh
Q 015813 155 LLVLRALVGFLSLFSFVY-SIQRLPLSQATVLSFTAPIMAS--IAARIILREKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~-al~~~~~~~a~~l~~~~P~~~~--ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
.+..+.+...++..+|+| -++..+-+-..++.+...++++ ++-.+|-|+-+-+...++++++++-..+..
T Consensus 24 ~l~~~~llll~ail~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~ 96 (381)
T PF05297_consen 24 SLLFGLLLLLVAILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSM 96 (381)
T ss_dssp -------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Confidence 444455555556555543 4444444444444443333333 233334445566777777776666554443
No 126
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=76.57 E-value=53 Score=28.91 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDV 112 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~ 112 (400)
++++..+-+++.+.+..+.+.
T Consensus 86 ~L~~~~if~~~~gi~~~f~~~ 106 (206)
T PF06570_consen 86 SLLFFGIFSLLFGIMGFFSPK 106 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344444555566666666553
No 127
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=76.24 E-value=51 Score=28.54 Aligned_cols=158 Identities=19% Similarity=0.153 Sum_probs=83.3
Q ss_pred hcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015813 201 LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANA 280 (400)
Q Consensus 201 l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~ 280 (400)
++++-.+....|+++.++|+.++..|..+... .....|..+ +++.+..-.+..-.|+
T Consensus 15 l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~------------------l~~~vG~~l-li~Gi~~ii~af~~r~---- 71 (185)
T COG3247 15 LKKPWWWVLLLGVLLIILGLLALFNPAISTVA------------------LVYVVGILL-LISGIIEIISAFGNRS---- 71 (185)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHHHHHHH------------------HHHHHHHHH-HHHHHHHHHHHHHhcc----
Confidence 56677778899999999999999988755322 345567444 3444444444433333
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHH-HHHHHHHHHHHhcccCccchhhhHhhHHHHHHH
Q 015813 281 SDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSIL-AFFAEVLLARGLQLEKTSKVANVQYIEVALTQL 359 (400)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~-~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i 359 (400)
+++.+....+ .+.+.....+..+.. . .......+++...++ ..+.........+..+ --..+...=+++.+
T Consensus 72 ~~~~W~lll~-Gil~i~~gil~~~~~---~-~~~~~l~~lia~~~i~~GI~ri~~~~~~~~~~---G~~w~ii~Gvl~ii 143 (185)
T COG3247 72 DNSFWPLLLS-GILSILLGILAGFNP---G-LGALVLTYLIAIWFIASGILRIVVAFRLRSLP---GWWWMIISGVLGII 143 (185)
T ss_pred cccchHHHHH-HHHHHHHHHHHHHhh---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---CcHHHHHHHHHHHH
Confidence 1123332222 222222222211111 1 111222222222222 2555554444444433 33445566677888
Q ss_pred HHHHHhcccCc----hhhhhhhHHHHHHHHHHHH
Q 015813 360 WGMGLSRIAPS----FGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 360 ~~~l~l~e~~~----~~~~~G~~li~~g~~~~~~ 389 (400)
.|++++-++.. ..-++|+-+++.|..+...
T Consensus 144 ~g~ill~~P~~~~~~l~~llGI~li~~G~~~i~~ 177 (185)
T COG3247 144 AGLILLFNPVASAWILGLLLGIELIFQGIALIAF 177 (185)
T ss_pred HHHHHHHccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877433 3357788888888777654
No 128
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=75.87 E-value=3.2 Score=33.97 Aligned_cols=53 Identities=19% Similarity=0.090 Sum_probs=32.3
Q ss_pred hcccCccchhhhHhhHHHHHHHHHHHHhcccC--chhhhhhhHHHHHHHHHHHHc
Q 015813 338 LQLEKTSKVANVQYIEVALTQLWGMGLSRIAP--SFGRLVGCVLILVSVFYTMYI 390 (400)
Q Consensus 338 l~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~--~~~~~~G~~li~~g~~~~~~~ 390 (400)
+..-+.-+.+.+.|+.|.++++++.++.+.-. ....++|+++-.+..++..++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ 123 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARR 123 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555667888999999999888877643321 234445555544444444443
No 129
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.29 E-value=9.3 Score=28.98 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHHhcccCchhhhhhhHHHHHHHHHHHH
Q 015813 358 QLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 358 ~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~ 389 (400)
+.++++.++|++.+.++.|.++++.|++++.+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999988877643
No 130
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=66.04 E-value=1.5e+02 Score=29.55 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCcCcHHHH--HHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHH
Q 015813 191 IMASIAARIILREKLKIAEI--GGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGG 268 (400)
Q Consensus 191 ~~~~ll~~~~l~e~~~~~~~--~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a 268 (400)
+.+.++-=.+-|.|+++.|. +|+.+++.=+.++...++. ..+..+.+.++.|-+
T Consensus 309 F~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi------------------------~F~~AYliAa~a~i~ 364 (430)
T PF06123_consen 309 FLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHI------------------------GFNLAYLIAALACIG 364 (430)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhh------------------------chHHHHHHHHHHHHH
Confidence 33333444556788888874 5555555555555555432 245566666666666
Q ss_pred HHHHHHHhhcc
Q 015813 269 ISYCLIKAGAN 279 (400)
Q Consensus 269 ~~~v~~k~~~~ 279 (400)
+...+.+...|
T Consensus 365 Li~~Y~~~vl~ 375 (430)
T PF06123_consen 365 LISLYLSSVLK 375 (430)
T ss_pred HHHHHHHHHHh
Confidence 66666666554
No 131
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=63.90 E-value=2.3 Score=38.81 Aligned_cols=63 Identities=8% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccCccchhhhHhhH----HHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHH
Q 015813 327 AFFAEVLLARGLQLEKTSKVANVQYIE----VALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 327 ~~~~~~~~~~al~~~~a~~~s~~~~~~----pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~ 389 (400)
-++..++|.+.+++.+|+.-+++.+-- -++-.|+++++-+..+|...=+=-++.++++++-.+
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY 184 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLY 184 (381)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888899999999888776532 222234444444445554432223344445554443
No 132
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=62.41 E-value=1.5 Score=40.63 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH-h---hCCC---Cc--------CchhHHHHHHHHH
Q 015813 96 MALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR-R---SGQP---IF--------GPMHARNLLVLRA 160 (400)
Q Consensus 96 ~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~-~---~~~~---~~--------~~~~~~~~~~~~~ 160 (400)
|+++.+|||......|++. ++.--.+...|-+.++.++..+++. - .++. .+ ..+......+++|
T Consensus 1 M~itmlcwGSW~nt~kL~~-r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAE-RRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHH-hcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 4577899999999999986 5444455677777777655544432 1 1211 00 0122345677888
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHH-hhHHHHHHHHHHHHhcCcCcHHHH
Q 015813 161 LVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEI 210 (400)
Q Consensus 161 ~~~~~~~~~~~~al~~~~~~~a~~l~-~~~P~~~~ll~~~~l~e~~~~~~~ 210 (400)
+...+++.+..+|+...+.+.+-++. .+.-++.+.+-+ ++..|.++..+
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NY-fld~~~n~a~i 129 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNY-FLDPKINRAEI 129 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeee-eccCCCCCceE
Confidence 99999999999999999998888774 344444444444 35666665443
No 133
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=56.98 E-value=28 Score=23.37 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015813 208 AEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 278 (400)
Q Consensus 208 ~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~ 278 (400)
..++|..+.++|++++..|+ .|.++.+++-...|......|+..
T Consensus 4 v~v~G~~lv~~Gii~~~lPG---------------------------pG~l~i~~GL~iLa~ef~wArr~l 47 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG---------------------------PGLLVIFLGLAILATEFPWARRLL 47 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC---------------------------CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 35788999999999998886 366777777777888887777654
No 134
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=55.86 E-value=11 Score=30.75 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=28.9
Q ss_pred cCccchhhhHhhHHHHHHHHHHHHhcccC--chhhhhhhHHHHHHHHHHH
Q 015813 341 EKTSKVANVQYIEVALTQLWGMGLSRIAP--SFGRLVGCVLILVSVFYTM 388 (400)
Q Consensus 341 ~~a~~~s~~~~~~pv~a~i~~~l~l~e~~--~~~~~~G~~li~~g~~~~~ 388 (400)
....+++.+.|+-|++.++++.++...-. .+..+++.++.++..++..
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~ 114 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLIL 114 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788889999999888876543321 3444555444444444433
No 135
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=54.46 E-value=4.8 Score=37.39 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhHh-hHHHHHHHHHHHHhcccCc--hhhhhhhHHHHHHHHHHHH
Q 015813 316 SFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPS--FGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 316 ~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~-~~pv~a~i~~~l~l~e~~~--~~~~~G~~li~~g~~~~~~ 389 (400)
.+...+.-|++--++.++..+++...+.+.+-++.. +..+.++++.|+. ..+.+ ..-+.|..++++++++-..
T Consensus 71 sv~~A~aGGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 71 SVLFAMAGGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred HHHHHHHhhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHHH
Confidence 333344445555788999999999998887776665 5555566666654 34433 2446688888888877554
No 136
>PRK11715 inner membrane protein; Provisional
Probab=51.90 E-value=2.6e+02 Score=27.90 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=17.9
Q ss_pred HHHhcCcCcHHHH--HHHHHHHHhhhhhhcccc
Q 015813 198 RIILREKLKIAEI--GGLALSFFGVLFIFRRIL 228 (400)
Q Consensus 198 ~~~l~e~~~~~~~--~g~~l~~~Gv~l~~~~~~ 228 (400)
=.+-|.|+++.|. +|+.+++.=..++...++
T Consensus 322 E~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEH 354 (436)
T PRK11715 322 ELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEH 354 (436)
T ss_pred HHhcCceecHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445677777774 455555555555555543
No 137
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=48.97 E-value=78 Score=31.72 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=21.1
Q ss_pred CchhhhhhhHHHHHHHHHHHHcCCccc
Q 015813 369 PSFGRLVGCVLILVSVFYTMYIGPEKE 395 (400)
Q Consensus 369 ~~~~~~~G~~li~~g~~~~~~~~~~~~ 395 (400)
++..|++.+.++++|++++.+.+++++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~~~ 280 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKGRE 280 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 688899999999999888776544433
No 138
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=39.15 E-value=34 Score=28.67 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=13.4
Q ss_pred ccchhhhHhhHHHHHHHHHHHH
Q 015813 343 TSKVANVQYIEVALTQLWGMGL 364 (400)
Q Consensus 343 a~~~s~~~~~~pv~a~i~~~l~ 364 (400)
..+.+.+.|+-|+++++.+.++
T Consensus 74 llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 74 LLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777766666543
No 139
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=38.94 E-value=1.7e+02 Score=22.24 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHH---hccc-CchhhhhhhHHHHHHHHHHH
Q 015813 321 LVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGL---SRIA-PSFGRLVGCVLILVSVFYTM 388 (400)
Q Consensus 321 ~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~---l~e~-~~~~~~~G~~li~~g~~~~~ 388 (400)
.+..++..+.+.+ ..++++.+...--.+-.+..+.++++|.+. -++. +-...+.|++.=+.+.-+..
T Consensus 9 ~y~t~~~ii~~~l-Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e 79 (93)
T PF06946_consen 9 TYMTFLSIITPAL-VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFE 79 (93)
T ss_pred HHHHHHHHHHHHH-HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHH
Confidence 3444444443332 556666664444455555556666665543 2222 22233666666565555533
No 140
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=38.70 E-value=2.4e+02 Score=23.80 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcccCccchhhhHh-hHHHHHHHHHHHHhcc-cCchhhhhhhHHHHHHHHHHH
Q 015813 325 ILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRI-APSFGRLVGCVLILVSVFYTM 388 (400)
Q Consensus 325 v~~~~~~~~~~~al~~~~a~~~s~~~~-~~pv~a~i~~~l~l~e-~~~~~~~~G~~li~~g~~~~~ 388 (400)
..+..++..|...-.... ++.....| ++-+.+..++.+++++ .+....+.+..+-++..++..
T Consensus 59 l~~iSa~lvW~~~~~~~~-~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i 123 (161)
T COG3476 59 LIGISAYLVWEKGPGQGT-SWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTI 123 (161)
T ss_pred HHHHHHHHHHHHcCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHH
Confidence 334667777766655544 66666666 8899999999999998 577777666666554444443
No 141
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=37.73 E-value=1e+02 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.2
Q ss_pred cCcCcHHHHHHHHHHHHhhhhhhcc
Q 015813 202 REKLKIAEIGGLALSFFGVLFIFRR 226 (400)
Q Consensus 202 ~e~~~~~~~~g~~l~~~Gv~l~~~~ 226 (400)
..|+++.+-.|+.+.++|++++..+
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3578899999999999999888754
No 142
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=37.30 E-value=2.3e+02 Score=23.22 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=40.7
Q ss_pred CccCCCHHHHHHHHHHHHHH-HHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhc
Q 015813 308 EFVLPSFYSFLLMLVLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSR 366 (400)
Q Consensus 308 ~~~~~~~~~~~~l~~~gv~~-~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~ 366 (400)
+.+..++..+..+..+.+++ ..-|..-.++.||.++++.+.... ..+.+.+.+++.
T Consensus 24 g~~~~~~~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~ga---~iG~IvG~f~~~ 80 (140)
T PF04306_consen 24 GFSEFGWWFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWGA---IIGGIVGFFVLP 80 (140)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHHHHHhh
Confidence 44456666777777777776 888999999999999999988744 345566655543
No 143
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=34.80 E-value=4.5e+02 Score=25.76 Aligned_cols=182 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCcCcHH-------HHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHHHH
Q 015813 192 MASIAARIILREKLKIA-------EIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSS 264 (400)
Q Consensus 192 ~~~ll~~~~l~e~~~~~-------~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa 264 (400)
+..+...+++++|..+. .-=...+..+|..++.......+. .+..............-..+++
T Consensus 162 ~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~----------gs~~~~~~~~~~~~~~nT~la~ 231 (399)
T PF00909_consen 162 VFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNA----------GSALAANGRAWLRAAVNTLLAA 231 (399)
T ss_dssp HHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHH----------CCGSSSSHHHHH-HHHHHHHHH
T ss_pred HHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhccccc----------ccccccCCccchhhhhhhhhhH
Q ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 015813 265 ITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTS 344 (400)
Q Consensus 265 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~al~~~~a~ 344 (400)
.+-++......+..+++.+. ..+....+..+.......-..........-+..|+++.+++-....-+|..++.
T Consensus 232 a~g~l~~~~~~~~~~gk~~~------~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~~iDD~~ 305 (399)
T PF00909_consen 232 AAGGLTWLLISYLLSGKWSM------VGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRLKIDDPV 305 (399)
T ss_dssp HHHHHHHHHHHHHHCSS--H------HHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HTT
T ss_pred HHHHHHHHHhhhccccccch------hhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccceeEecccc
Q ss_pred chhhhHhhHHHHHHHHHHHHhcccCc----------------hhhhhhhHHHHHHHHHHHH
Q 015813 345 KVANVQYIEVALTQLWGMGLSRIAPS----------------FGRLVGCVLILVSVFYTMY 389 (400)
Q Consensus 345 ~~s~~~~~~pv~a~i~~~l~l~e~~~----------------~~~~~G~~li~~g~~~~~~ 389 (400)
.+-.+-..-=+++.+..-++-.+... ..|++|.+.++.-.....+
T Consensus 306 ~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~~~~~~~~~~s~ 366 (399)
T PF00909_consen 306 GAFAVHGVGGIWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLGIVVILAWSFVVSY 366 (399)
T ss_dssp GHHHHCHHHHHHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEeeeeccHHHHHHHHHHHhccccccccccccccCCchhHHHHHHHHHHHHHHHHHHHHH
No 144
>PRK11715 inner membrane protein; Provisional
Probab=34.10 E-value=4.9e+02 Score=25.98 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSG 143 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~ 143 (400)
...|++++.+.-+.+-+.-+..| ..++|+|-...=...+...++++..-.+
T Consensus 304 ~KYgiLFI~LTF~~fFlfE~~~~----~~iHpiQYlLVGlAl~lFYLLLLSlSEH 354 (436)
T PRK11715 304 VKYAILFIALTFAAFFLFELLKK----LRIHPVQYLLVGLALVLFYLLLLSLSEH 354 (436)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcC----ceecHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34578888888888877777655 4689999998888887777766665544
No 145
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=33.94 E-value=4.9e+02 Score=25.93 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 015813 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSG 143 (400)
Q Consensus 89 ~~~G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~ 143 (400)
...|++++.+.-+.+-+.-++.| ..++|+|-...-...+...++++..-.+
T Consensus 298 ~KYgiLFI~LTF~~fflfE~~~~----~~iHpiQY~LVGlAl~lFYlLLLSlSEh 348 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFELLSK----LRIHPIQYLLVGLALVLFYLLLLSLSEH 348 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34578888888888877777765 4789999988888777766666655544
No 146
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=33.34 E-value=2.8e+02 Score=22.94 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcC
Q 015813 322 VLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 391 (400)
Q Consensus 322 ~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~ 391 (400)
..++++......+...+++-+..|.++-...-- .-+++..---.++.++.|..++.. ++++...+
T Consensus 53 l~~ll~~~T~G~~~~lm~~kgi~rm~lG~~vm~----~~~~llw~ggv~~~~IAg~~lv~f-ilmvVLiP 117 (144)
T PF01350_consen 53 LVVLLGVMTLGVFWFLMRRKGIGRMSLGMLVMA----VAGYLLWMGGVPPGQIAGVLLVFF-ILMVVLIP 117 (144)
T ss_pred HHHHHHHHHHHHHHhhhcCCCcchhhHHHHHHH----HHHHHHHhcCCcHHHhHHHHHHHH-HHHHhccc
Confidence 333334334444445567777777776554433 334444445567888888888886 44444443
No 147
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=32.86 E-value=4.9e+02 Score=25.65 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 015813 151 HARNLLVLRALVGFLSLFSFVYSIQ 175 (400)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~al~ 175 (400)
+......++.+....++..|+-+-.
T Consensus 203 ~n~~~~~lG~~iLw~gW~gFN~gs~ 227 (404)
T TIGR03644 203 SNLPLATLGTFILWMGWFGFNGGSQ 227 (404)
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhh
Confidence 3445667777777777777765543
No 148
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=32.31 E-value=2.2e+02 Score=25.11 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=26.4
Q ss_pred HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHH--Hhhhhhh
Q 015813 186 SFTAPIMASIAARIILREKLKIAEIGGLALSF--FGVLFIF 224 (400)
Q Consensus 186 ~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~--~Gv~l~~ 224 (400)
+-....+.++++.+-++||++++.....++.+ .|+.+..
T Consensus 132 tH~svfls~v~~~vhfreRpgksgl~~svl~~~~lg~~~lf 172 (236)
T COG5522 132 THISVFLSAVILIVHFRERPGKSGLVMSVLVAISLGIMCLF 172 (236)
T ss_pred HHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHH
Confidence 34556667777888899999999876655443 3444444
No 149
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=31.87 E-value=1.7e+02 Score=20.05 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhhhccccc
Q 015813 211 GGLALSFFGVLFIFRRILT 229 (400)
Q Consensus 211 ~g~~l~~~Gv~l~~~~~~~ 229 (400)
.|++..+.|++++..|+..
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~ 20 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDAS 20 (72)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 5788899999999988754
No 150
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.76 E-value=31 Score=27.65 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHcCCccc
Q 015813 375 VGCVLILVSVFYTMYIGPEKE 395 (400)
Q Consensus 375 ~G~~li~~g~~~~~~~~~~~~ 395 (400)
+|++++++.+++..+|.+||.
T Consensus 75 aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 344444444455555544443
No 151
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=30.61 E-value=2.9e+02 Score=22.70 Aligned_cols=48 Identities=10% Similarity=0.209 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCccchhhhHhhHHHHHHHHHHHHhccc
Q 015813 321 LVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIA 368 (400)
Q Consensus 321 ~~~gv~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~i~~~l~l~e~ 368 (400)
+.....+..++..+...-.+....+...+...+-.+...+..++++.+
T Consensus 47 ~ly~l~g~a~~~v~~~~~~~~~~~~~l~l~~~~l~ln~~W~~ifF~~~ 94 (148)
T PF03073_consen 47 ILYILMGIASYLVWRKGGGSPRRRRALALYAIQLALNFAWSPIFFGLR 94 (148)
T ss_pred HHHHHHHHHHHhhHhcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555544455556666667788888888888887765
No 152
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=29.47 E-value=3e+02 Score=22.07 Aligned_cols=20 Identities=25% Similarity=0.173 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhccchhhHHH
Q 015813 165 LSLFSFVYSIQRLPLSQATV 184 (400)
Q Consensus 165 ~~~~~~~~al~~~~~~~a~~ 184 (400)
.....|...+++++--.++.
T Consensus 80 ~~~~~y~~~~~~lGf~~at~ 99 (141)
T PF07331_consen 80 GLLVLYVLLLEYLGFIIATF 99 (141)
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 33455555666665544444
No 153
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=29.13 E-value=1e+02 Score=25.50 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=28.6
Q ss_pred HHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHh
Q 015813 173 SIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFG 219 (400)
Q Consensus 173 al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~G 219 (400)
++.--+.-.++.+.++.|+++.+++.++ -+++...+.+.++.++.|
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e~~~~~~~~lg 113 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL-AQYLFFSELIVIFGAFLG 113 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHH
Confidence 3445566677888899999998887765 334444444444444433
No 154
>PRK10209 acid-resistance membrane protein; Provisional
Probab=28.45 E-value=3.9e+02 Score=23.08 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=28.4
Q ss_pred hHhhHHHHHHHHHHHHh-cccC----chhhhhhhHHHHHHHHHHHHc
Q 015813 349 VQYIEVALTQLWGMGLS-RIAP----SFGRLVGCVLILVSVFYTMYI 390 (400)
Q Consensus 349 ~~~~~pv~a~i~~~l~l-~e~~----~~~~~~G~~li~~g~~~~~~~ 390 (400)
.....=+.+.+.|.+++ ..+. ....++|+.+++.|+......
T Consensus 137 ~~l~~Gil~iilGi~il~~~P~~~~~~l~~ligi~li~~Gi~~l~la 183 (190)
T PRK10209 137 LQIVIGVLDLVIAWLLLGAGPQVSITLVTTLVGIEMIFSSFSLFSFA 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888765 4332 345688888888888877654
No 155
>PRK11469 hypothetical protein; Provisional
Probab=28.33 E-value=69 Score=27.84 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=29.0
Q ss_pred cchhhhHhhHHHHHHHHHHHHhcccCchhhhhhhHHHH-HHHHHH
Q 015813 344 SKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLIL-VSVFYT 387 (400)
Q Consensus 344 ~~~s~~~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~-~g~~~~ 387 (400)
...+.++.+.|..+...|..+-+-.....+++|..+.+ .|...+
T Consensus 41 l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi 85 (188)
T PRK11469 41 LIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMI 85 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466778889999888887766655566677666544 344443
No 156
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=28.16 E-value=4e+02 Score=23.13 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH--HHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLIL--SYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFS 169 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (400)
++++.-+-+++-|.+..+.+.+ ..++-..++..-...++.+ +.-++.+.+... ..+..++..++......+-+.+
T Consensus 101 sLl~lg~~aLlsgitaff~~nA--~~~GlItlll~a~vgGfamy~my~y~yr~~ad~-sqr~~~~K~~lv~~~sm~lWi~ 177 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNA--QVYGLITLLLTAVVGGFAMYIMYYYAYRMRADN-SQRPGTWKYLLVAVLSMLLWIA 177 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHhhhHHHHHHHHHHHHhhccc-ccCCchHHHHHHHHHHHHHHHH
Confidence 4555555566667777776653 2333333333333333322 222333322211 2222333344444444444444
Q ss_pred HHHHHhccchhh
Q 015813 170 FVYSIQRLPLSQ 181 (400)
Q Consensus 170 ~~~al~~~~~~~ 181 (400)
.+.+-..+|.+.
T Consensus 178 v~i~t~~lPtsl 189 (226)
T COG4858 178 VMIATVFLPTSL 189 (226)
T ss_pred HHHHHhhCCCcC
Confidence 455666666543
No 157
>COG2323 Predicted membrane protein [Function unknown]
Probab=27.89 E-value=3.7e+02 Score=24.07 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHhhHHHHHHHHHHHH
Q 015813 121 FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 200 (400)
Q Consensus 121 ~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~ll~~~~ 200 (400)
+.-.++|.++..+.++++.+..+++........-.++...+....+...+.. .++.....+...+.-++..+++++-
T Consensus 4 ~~~~~ir~vi~~~~l~l~~ri~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~---~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 4 LLEVAIRSVIGYLILLLLLRIMGKRSISQMTIFDFVVMITLGSIAGDAIFDD---DVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCccccCCHHHHHHHHHHHHHHHHHhhCC---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999998888887665554444444444444444444433 3444444455555556666666665
Q ss_pred hc
Q 015813 201 LR 202 (400)
Q Consensus 201 l~ 202 (400)
.|
T Consensus 81 ~k 82 (224)
T COG2323 81 LK 82 (224)
T ss_pred hc
Confidence 55
No 158
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=26.61 E-value=1.5e+02 Score=23.73 Aligned_cols=43 Identities=9% Similarity=-0.001 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhhhhccccccccccCCCcCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015813 209 EIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 278 (400)
Q Consensus 209 ~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~ 278 (400)
.++|.++.++|++++..|+ .|.+..+++-...|.-+...|+..
T Consensus 29 ~v~G~~~~~~Gi~ml~lPG---------------------------pG~l~i~iGl~iLatEf~WA~r~L 71 (121)
T TIGR02611 29 LVVGWVVLIVGIITIPLPG---------------------------PGWLTIFIGLAILSLEFVWAQRLL 71 (121)
T ss_pred HHHHHHHHHHHHHHhccCC---------------------------chHHHHHHHHHHHHHhhHHHHHHH
Confidence 4678888899999988876 477777778888888888777654
No 159
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.22 E-value=32 Score=23.67 Aligned_cols=19 Identities=26% Similarity=0.453 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhhhhhccc
Q 015813 209 EIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 209 ~~~g~~l~~~Gv~l~~~~~ 227 (400)
|++|+++.+.|+.++....
T Consensus 1 kiigi~Llv~GivLl~~G~ 19 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFGY 19 (59)
T ss_pred CeeeehHHHHHHHHHHhhh
Confidence 3567888999998887664
No 160
>PF15102 TMEM154: TMEM154 protein family
Probab=25.64 E-value=38 Score=27.95 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHcCC
Q 015813 378 VLILVSVFYTMYIGP 392 (400)
Q Consensus 378 ~li~~g~~~~~~~~~ 392 (400)
+|++..++++.+.+|
T Consensus 70 lLLl~vV~lv~~~kR 84 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKR 84 (146)
T ss_pred HHHHHHHHheeEEee
Confidence 333333444443333
No 161
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=25.09 E-value=4.7e+02 Score=22.91 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=30.3
Q ss_pred HHhhHHHHHHHHHHHHhcCcCcH-------------HHHHHHHHHHHhhhhhh
Q 015813 185 LSFTAPIMASIAARIILREKLKI-------------AEIGGLALSFFGVLFIF 224 (400)
Q Consensus 185 l~~~~P~~~~ll~~~~l~e~~~~-------------~~~~g~~l~~~Gv~l~~ 224 (400)
+....|+...++.+.+.+||... ++..+.++.++|++++.
T Consensus 158 ~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 158 LIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 34577888888888888877632 35778888888888875
No 162
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=24.56 E-value=94 Score=25.15 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=25.9
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhh
Q 015813 177 LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVL 221 (400)
Q Consensus 177 ~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~ 221 (400)
-....++.+.+..|++..+++.+ ++..+...+..+++.++.|.+
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~-l~~~~~~~e~~~~l~~l~~l~ 108 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAV-LGSYLGGSELWAILGGLLGLA 108 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778888888777655 333444445555555555443
No 163
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=22.28 E-value=1.3e+02 Score=25.27 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=15.2
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHH
Q 015813 176 RLPLSQATVLSFTAPIMASIAARI 199 (400)
Q Consensus 176 ~~~~~~a~~l~~~~P~~~~ll~~~ 199 (400)
.-..-.++.+.++.|++..+++..
T Consensus 71 e~~llkaa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 71 EGSLLRSALLVYMTPLVGLFLGAA 94 (154)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777777777776544
No 164
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=22.13 E-value=6.3e+02 Score=23.32 Aligned_cols=113 Identities=6% Similarity=0.087 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCc----hhHHHHHHHHHHHHHH
Q 015813 91 SGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGP----MHARNLLVLRALVGFL 165 (400)
Q Consensus 91 ~G~ll~l~a~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 165 (400)
+|.+++++ +.+++.+.+...+- .+++.|-....+...........++..++.+++.+ .-..+.++..++....
T Consensus 96 ng~ll~ll--~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~a 173 (314)
T COG3965 96 NGTLLALL--CLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAA 173 (314)
T ss_pred ccHHHHHH--HHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHH
Confidence 34444443 45666666665542 35677766666655544433333333332111111 1122333344444443
Q ss_pred HHHHHH--HHHhccchhhHHHHHhhHHHHHHHHHHHHhcCcCcH
Q 015813 166 SLFSFV--YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKI 207 (400)
Q Consensus 166 ~~~~~~--~al~~~~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~ 207 (400)
-+..|. ++++.++ .+-...+.-|++..+.+..+..-++..
T Consensus 174 l~VaF~~a~~l~~T~--~a~l~~Y~DPmvlaL~~~v~IplPlg~ 215 (314)
T COG3965 174 LFVAFAAAWLLAGTK--FAHLVVYADPMVLALVCLVFIPLPLGT 215 (314)
T ss_pred HHHHHHHHHHhccCc--hhhhhcccCHHHHHHHHHheeeccHHH
Confidence 344443 4445444 444555678999998887777655543
No 165
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=21.94 E-value=4.6e+02 Score=21.62 Aligned_cols=27 Identities=11% Similarity=-0.026 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015813 252 DHMLAVLVGLFSSITGGISYCLIKAGA 278 (400)
Q Consensus 252 ~~~~G~l~~l~aa~~~a~~~v~~k~~~ 278 (400)
......+..+++++.|--|...+||+.
T Consensus 118 ~~i~~l~~~li~a~IwipYf~~S~RVK 144 (149)
T PF10754_consen 118 EAIRELLRSLIAAAIWIPYFLRSKRVK 144 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 456788889999999999999998853
No 166
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=21.89 E-value=58 Score=21.33 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHcCCcccc
Q 015813 377 CVLILVSVFYTMYIGPEKEM 396 (400)
Q Consensus 377 ~~li~~g~~~~~~~~~~~~~ 396 (400)
..++.+|+++..+++++|++
T Consensus 19 ~~~~Figiv~wa~~p~~k~~ 38 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKKA 38 (48)
T ss_pred HHHHHHHHHHHHhCCCcchh
Confidence 46777888888888777665
No 167
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=21.88 E-value=1.1e+02 Score=17.91 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=6.7
Q ss_pred chhhhhhhHHHHH
Q 015813 370 SFGRLVGCVLILV 382 (400)
Q Consensus 370 ~~~~~~G~~li~~ 382 (400)
.+..++|.+++..
T Consensus 11 ~~~~~~G~~l~~~ 23 (34)
T TIGR01167 11 SLLLLLGLLLLGL 23 (34)
T ss_pred HHHHHHHHHHHHH
Confidence 3555666644443
No 168
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.37 E-value=2.9e+02 Score=19.21 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=38.2
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 179 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 179 ~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
.+..+++..+.-+...+=+.++..++.-+..++++..++++.+....|.
T Consensus 10 lAtiavFiaLagl~~~I~GlLfD~~~~~~yg~~al~~Gv~~fV~~Lnp~ 58 (62)
T PF11177_consen 10 LATIAVFIALAGLAAVIHGLLFDEERVFRYGVIALVVGVAGFVVMLNPA 58 (62)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 3445566666777777777788889999999999999999988887665
No 169
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=21.21 E-value=9.7e+02 Score=25.14 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=8.8
Q ss_pred hhhhhHHHHHHHHHHHHc
Q 015813 373 RLVGCVLILVSVFYTMYI 390 (400)
Q Consensus 373 ~~~G~~li~~g~~~~~~~ 390 (400)
..+|.++.+++++.....
T Consensus 203 ~~~Gl~l~vl~l~~i~~~ 220 (616)
T PF10131_consen 203 FYFGLALFVLILAGIIFW 220 (616)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555554444433
Done!