Query 015813
Match_columns 400
No_of_seqs 264 out of 1874
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 02:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.9 2.7E-08 9.2E-13 77.8 13.9 102 92-227 3-105 (110)
2 2i68_A Protein EMRE; transmemb 98.9 3.4E-09 1.2E-13 85.9 8.5 72 156-227 33-105 (137)
3 2i68_A Protein EMRE; transmemb 98.9 3.9E-09 1.3E-13 85.6 7.9 70 323-392 35-106 (137)
4 3b5d_A Multidrug transporter E 98.7 2.7E-07 9.2E-12 72.1 12.7 100 257-391 4-105 (110)
5 2l2t_A Receptor tyrosine-prote 46.3 20 0.00067 22.2 3.0 7 387-393 32-38 (44)
6 2ks1_B Epidermal growth factor 39.9 26 0.00089 21.6 2.9 7 387-393 33-39 (44)
7 1pw4_A Glycerol-3-phosphate tr 29.5 3.2E+02 0.011 24.8 24.9 16 190-205 196-211 (451)
8 3l1l_A Arginine/agmatine antip 18.0 5.6E+02 0.019 23.4 12.5 40 352-391 389-428 (445)
9 3rko_J NADH-quinone oxidoreduc 11.2 6.4E+02 0.022 20.6 12.2 34 358-391 127-162 (184)
10 2b2h_A AMT-1, ammonium transpo 10.5 9.6E+02 0.033 22.2 17.1 231 92-347 126-372 (399)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.93 E-value=2.7e-08 Score=77.82 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCchhHHHHHHHHHHHHHHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (400)
..++.+++.++-...+...|.. ++.. + .+..+...++...++.++.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s--~~~~-------------------------------~-~~~~~~~~~~~~~~~~~~~ 48 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFS--EGFT-------------------------------R-LWPSVGTIICYCASFWLLA 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCcc-------------------------------h-HHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777787762 2210 1 1233566777889999999
Q ss_pred HHHhccchhhHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 172 YSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 172 ~al~~~~~~~a~~l-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
+++++.|.+.+..+ ..+.|+++.+++++++||++++.|++|++++++|++++...+
T Consensus 49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998 799999999999999999999999999999999999987543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.91 E-value=3.4e-09 Score=85.90 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccc
Q 015813 156 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 227 (400)
.+++.++..++++++.+++++.|++.+..+ .++.|+++.+++++++||++++.+++|++++++|++++...+
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 356678888999999999999999999999 899999999999999999999999999999999999987654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.89 E-value=3.9e-09 Score=85.59 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=52.4
Q ss_pred HHHHH-HHHHHHHHHHhcccCccchhhh-HhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcCC
Q 015813 323 LSILA-FFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 392 (400)
Q Consensus 323 ~gv~~-~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~~ 392 (400)
+++++ +++|+++++++++.+++++..+ .++.|+++.++++++++|++++.+++|+++|++|++++...++
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444 8999999999999999999998 8999999999999999999999999999999999999987553
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.70 E-value=2.7e-07 Score=72.09 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCccCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 015813 257 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-FFAEVLLA 335 (400)
Q Consensus 257 ~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~-~~~~~~~~ 335 (400)
.++.+++.++-+..+...|+. + + . . ..|.. ..++++ .+++.++.
T Consensus 4 ~l~l~~a~~~e~~~~~~lK~s-~--~-~-------------------------~----~~~~~--~~~~~~~~~~~~~~~ 48 (110)
T 3b5d_A 4 YIYLGGAILAEVIGTTLMKFS-E--G-F-------------------------T----RLWPS--VGTIICYCASFWLLA 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-c--C-c-------------------------c----hHHHH--HHHHHHHHHHHHHHH
Confidence 456677788888888887762 1 1 0 0 11222 244444 88999999
Q ss_pred HHhcccCccchhhh-HhhHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcC
Q 015813 336 RGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 391 (400)
Q Consensus 336 ~al~~~~a~~~s~~-~~~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~ 391 (400)
+++|+.+.+++..+ ..+.|+++.+++++++||++++.+++|+.+|+.|++.+...+
T Consensus 49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999888 799999999999999999999999999999999999987654
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=46.28 E-value=20 Score=22.18 Aligned_cols=7 Identities=0% Similarity=-0.240 Sum_probs=2.7
Q ss_pred HHHcCCc
Q 015813 387 TMYIGPE 393 (400)
Q Consensus 387 ~~~~~~~ 393 (400)
..+++++
T Consensus 32 ~~~RRRr 38 (44)
T 2l2t_A 32 VYVRRKS 38 (44)
T ss_dssp HHHHTTC
T ss_pred HHhhhhh
Confidence 3334333
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=39.90 E-value=26 Score=21.62 Aligned_cols=7 Identities=0% Similarity=-0.178 Sum_probs=2.6
Q ss_pred HHHcCCc
Q 015813 387 TMYIGPE 393 (400)
Q Consensus 387 ~~~~~~~ 393 (400)
..+++++
T Consensus 33 ~~~RRr~ 39 (44)
T 2ks1_B 33 LFMRRRH 39 (44)
T ss_dssp HHHHTTT
T ss_pred HHhhhhH
Confidence 3334333
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=29.51 E-value=3.2e+02 Score=24.79 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhcCcC
Q 015813 190 PIMASIAARIILREKL 205 (400)
Q Consensus 190 P~~~~ll~~~~l~e~~ 205 (400)
.+...++..++++|++
T Consensus 196 ~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 196 AILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHhhccCCH
Confidence 3344445555666644
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=18.02 E-value=5.6e+02 Score=23.42 Aligned_cols=40 Identities=8% Similarity=-0.111 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHhcccCchhhhhhhHHHHHHHHHHHHcC
Q 015813 352 IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 391 (400)
Q Consensus 352 ~~pv~a~i~~~l~l~e~~~~~~~~G~~li~~g~~~~~~~~ 391 (400)
.-++++.++..+..-..-....+.|..+++.|..+....+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~ 428 (445)
T 3l1l_A 389 AVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNY 428 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555544443322222344567777777776665443
No 9
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=11.25 E-value=6.4e+02 Score=20.60 Aligned_cols=34 Identities=15% Similarity=-0.048 Sum_probs=23.7
Q ss_pred HHHHHHHhcccCchhhhhhhHHHHH--HHHHHHHcC
Q 015813 358 QLWGMGLSRIAPSFGRLVGCVLILV--SVFYTMYIG 391 (400)
Q Consensus 358 ~i~~~l~l~e~~~~~~~~G~~li~~--g~~~~~~~~ 391 (400)
--+|..++++-+-+.++.+.+|.++ |.+.+.+++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3678888899888899998887653 444444433
No 10
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=10.47 E-value=9.6e+02 Score=22.21 Aligned_cols=231 Identities=12% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhC--CCCcCchhHHHHHHHHHHHHHHHHHH
Q 015813 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSG--QPIFGPMHARNLLVLRALVGFLSLFS 169 (400)
Q Consensus 92 G~ll~l~a~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (400)
+.++...+-..|+ ...+.+.-. .+..--..+-.-...+.+....++.+|+ .+...+.+......++.+...+++..
T Consensus 126 ~~vY~~~ahwvW~-~GwL~~lG~-~DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfG 203 (399)
T 2b2h_A 126 TFVYAPFAHWLWG-GGWLAKLGA-LDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFG 203 (399)
T ss_dssp HHTHHHHHHHHHS-SCHHHHTTC-CCSSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhheEC-chhHHhcCC-ccccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHhcc---chhhHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhccccccccccCCCcCCCccccc
Q 015813 170 FVYSIQRL---PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 246 (400)
Q Consensus 170 ~~~al~~~---~~~~a~~l~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (400)
|+-+-... ....+.+-+++......+-..++-.-+ ++....++.=+.++-.+-..+.-..-.
T Consensus 204 FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~-------------- 268 (399)
T 2b2h_A 204 FNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVD-------------- 268 (399)
T ss_dssp HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCC--------------
T ss_pred hcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCC--------------
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhhcCcc-----------CCCHH
Q 015813 247 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFV-----------LPSFY 315 (400)
Q Consensus 247 ~~~~~~~~~G~l~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 315 (400)
.+...+..+++++..-....+.+|+ +.|++........+.+..-.....++..+.. ..-..
T Consensus 269 ------p~~A~iiG~iag~i~~~~~~l~~kl--~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~Gl~~g~~~ql~~ 340 (399)
T 2b2h_A 269 ------VKGAIVIGLVAGIVCYLAMDFRIKK--KIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFGNPQLLVS 340 (399)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHT--TCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHHSCCCGGGTCHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCceeccchhhHHHHHHHHHHccccccCCCccccCcHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCccchh
Q 015813 316 SFLLMLVLSILAFFAEVLLARGLQLEKTSKVA 347 (400)
Q Consensus 316 ~~~~l~~~gv~~~~~~~~~~~al~~~~a~~~s 347 (400)
+...++...+.+++.-+...+.+++...-|++
T Consensus 341 Ql~g~~~~~~~~~v~~~i~~~il~~~~glRv~ 372 (399)
T 2b2h_A 341 QLIAVASTTAYAFLVTLILAKAVDAAVGLRVS 372 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Done!