Query 015813
Match_columns 400
No_of_seqs 264 out of 1874
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 02:58:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015813.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015813hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 62.4 44 0.0032 28.4 21.5 16 189-204 192-207 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 35.6 1.2E+02 0.0086 25.4 11.0 46 177-222 56-103 (447)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 12.1 91 0.0066 15.1 2.9 17 255-271 3-19 (27)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 9.1 1.3E+02 0.0093 14.8 3.7 15 192-206 14-28 (30)
5 d1pv7a_ f.38.1.2 (A:) Lactose 5.1 6.5E+02 0.047 19.4 14.1 23 202-224 283-305 (417)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 4.1 3.1E+02 0.023 14.3 3.9 18 90-107 18-35 (37)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.3 9.3E+02 0.068 18.4 8.0 31 191-221 36-66 (248)
8 d1u7ga_ f.44.1.1 (A:) Ammonium 2.5 1.3E+03 0.097 18.7 24.3 72 151-224 194-271 (383)
9 d2iuba2 f.17.3.1 (A:286-349) M 2.5 4.3E+02 0.031 15.4 2.1 9 373-381 44-52 (64)
10 d1rh5b_ f.23.28.1 (B:) Preprot 2.2 6.8E+02 0.049 14.5 3.3 19 256-274 31-49 (56)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=62.41 E-value=44 Score=28.41 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhcCc
Q 015813 189 APIMASIAARIILREK 204 (400)
Q Consensus 189 ~P~~~~ll~~~~l~e~ 204 (400)
..+...++.+++.+|+
T Consensus 192 ~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 192 CAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHCCCS
T ss_pred hHHHHHHHHHHhcccc
Confidence 3444444555555443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=35.63 E-value=1.2e+02 Score=25.37 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=27.6
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHhhhh
Q 015813 177 LPLSQATVLSFTAPIMASIAARII--LREKLKIAEIGGLALSFFGVLF 222 (400)
Q Consensus 177 ~~~~~a~~l~~~~P~~~~ll~~~~--l~e~~~~~~~~g~~l~~~Gv~l 222 (400)
.+.++.+.+.....+...+...+. +-||.++++.+...+.+.++..
T Consensus 56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 103 (447)
T d1pw4a_ 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 103 (447)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 466666776666655555444332 4488888887665555554443
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.07 E-value=91 Score=15.09 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015813 255 LAVLVGLFSSITGGISY 271 (400)
Q Consensus 255 ~G~l~~l~aa~~~a~~~ 271 (400)
+|.++.-++++.||.|-
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777788888887764
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.06 E-value=1.3e+02 Score=14.82 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCcCc
Q 015813 192 MASIAARIILREKLK 206 (400)
Q Consensus 192 ~~~ll~~~~l~e~~~ 206 (400)
+...+-.+|++|+++
T Consensus 14 i~lfffaiffreppr 28 (30)
T d2axtt1 14 IALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHhcCCCC
Confidence 334444567788775
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.13 E-value=6.5e+02 Score=19.36 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=12.0
Q ss_pred cCcCcHHHHHHHHHHHHhhhhhh
Q 015813 202 REKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 202 ~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
.+|..+++.+.....+.++.++.
T Consensus 283 ~~r~~~~~~~~~~~~~~~~~~~~ 305 (417)
T d1pv7a_ 283 INRIGGKNALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhHHHHHHhhhc
Confidence 35666666555555555544433
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.14 E-value=3.1e+02 Score=14.31 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 015813 90 YSGLMCMALSSTIYFFMQ 107 (400)
Q Consensus 90 ~~G~ll~l~a~~~~~~~~ 107 (400)
..|++++..-+++|+.+.
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 348888888888887654
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.27 E-value=9.3e+02 Score=18.44 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHhhh
Q 015813 191 IMASIAARIILREKLKIAEIGGLALSFFGVL 221 (400)
Q Consensus 191 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~ 221 (400)
+.+.++.++++.+|.-+.+++-=.+++..++
T Consensus 36 ~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 36 ILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp HHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 3344445556666666665554444444433
No 8
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.49 E-value=1.3e+03 Score=18.66 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHH--HHh----hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhh
Q 015813 151 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATV--LSF----TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (400)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~a~~--l~~----~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~ 224 (400)
+......++.+....++..|+-+-.......+.. .+. ..-.++.++...+.++|++.....-.. +.|.+-+.
T Consensus 194 ~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~--LaGLVait 271 (383)
T d1u7ga_ 194 HNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGA--IAGLVGVT 271 (383)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH--HHHHHHHT
T ss_pred CChhhhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHh--hhhhhhcc
Confidence 4455667777777778888876665543333221 122 223333333344566778777655433 33444443
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.47 E-value=4.3e+02 Score=15.41 Aligned_cols=9 Identities=0% Similarity=0.194 Sum_probs=3.6
Q ss_pred hhhhhHHHH
Q 015813 373 RLVGCVLIL 381 (400)
Q Consensus 373 ~~~G~~li~ 381 (400)
..++..+++
T Consensus 44 ~~~~~~~~~ 52 (64)
T d2iuba2 44 VVLAVMGVI 52 (64)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444333
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.24 E-value=6.8e+02 Score=14.52 Aligned_cols=19 Identities=21% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015813 256 AVLVGLFSSITGGISYCLI 274 (400)
Q Consensus 256 G~l~~l~aa~~~a~~~v~~ 274 (400)
|..+.+++.++|.++.+..
T Consensus 31 ~iG~~i~G~IGf~I~li~~ 49 (56)
T d1rh5b_ 31 ALGISLLGIIGYIIHVPAT 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Done!