Citrus Sinensis ID: 015815

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQVQAA
ccccccHHHHHHHHHHHHcccEEEEEEEEcccccccccccHHHHHHHccccccEEEcccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccEEccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHHHcccEEEcccccccccccHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccc
cccccHHHHHHHHHHHHHcccEEEEEEEEcccccccEcccHHHHHHccccHHHEEEcccccEEEEEEcHHHcccEEEccEEHHHHHHHHHHHHHHHcHHHHcccEEEEEEcccHHHEccccccccccccccccccccEEEccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHHHccccEccEcccHHHHHHHHHcccEEEEccccccHHHccHHHcccHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHcccccccEEEEEEccHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccHccc
MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHalkqpkiplpdwvsqigesqssifytdqsgqqfkgclslavddlpvldgktpIQVYQEFCESFKssfkpfmgttitgismglgpdgelrypshhrlaksskipgvgefqccDRNMLNLLQQHAEangnplwglrgphdapsydespnsnsffkdnggswespygdFFLSWYSSQLishgncllslasstfgetgvsiygkiplihswyktrshpseltaglyntaKRDGYAAVAEMFAKNSCkmilpgmdlsdehqpresfsspESLLAQIRTACNKhgvevsgqnssvtgapggfeQMKKNLfgenvvdlftyqrmgayffspehfpsFTKFVRNLNQlelhgddlpveeEVTESVHTNANTNIQVQAA
MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTEsvhtnantniqvqaa
MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQVQAA
***YNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRY**********KIPGVGEFQCCDRNMLNLLQQHAEANGNPLWG************************GSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILP***************************************************MKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHG**************************
MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQP***FSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLEL****************************
MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSD************SLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQVQAA
*GKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN********************************
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iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQVQAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query400 2.2.26 [Sep-21-2011]
Q8VYW2536 Inactive beta-amylase 9 O yes no 0.942 0.703 0.657 1e-138
O23553548 Beta-amylase 3, chloropla no no 0.92 0.671 0.394 3e-78
Q9LIR6575 Beta-amylase 1, chloropla no no 0.972 0.676 0.396 5e-77
Q9FM68531 Inactive beta-amylase 4, no no 0.915 0.689 0.379 5e-74
O65258542 Beta-amylase 2, chloropla no no 0.907 0.669 0.363 1e-67
Q8L762577 Beta-amylase 6 OS=Arabido no no 0.89 0.616 0.341 7e-66
P10537499 Beta-amylase OS=Ipomoea b N/A no 0.965 0.773 0.333 9e-64
P25853498 Beta-amylase 5 OS=Arabido no no 0.905 0.726 0.335 1e-62
O65015496 Beta-amylase OS=Trifolium N/A no 0.925 0.745 0.341 9e-62
P55005488 Beta-amylase OS=Zea mays N/A no 0.94 0.770 0.328 9e-62
>sp|Q8VYW2|BAM9_ARATH Inactive beta-amylase 9 OS=Arabidopsis thaliana GN=BAM9 PE=2 SV=1 Back     alignment and function desciption
 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/383 (65%), Positives = 308/383 (80%), Gaps = 6/383 (1%)

Query: 2   GKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQ 61
           GKY WSGYLAVAE+V+K+GLKLH SL FH  KQ +I LPDWV++IG+++  I++TD+ GQ
Sbjct: 140 GKYEWSGYLAVAEIVKKVGLKLHASLSFHGSKQTEIGLPDWVAKIGDAEPGIYFTDRYGQ 199

Query: 62  QFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYP 121
           Q+K CLS AVDD+PVLDGKTP++VY+ FCESFKS+F  +MG TITGI++GLGPDGEL+YP
Sbjct: 200 QYKDCLSFAVDDVPVLDGKTPMEVYRGFCESFKSAFADYMGNTITGITLGLGPDGELKYP 259

Query: 122 SHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSF 181
           SH     ++K+ G GEFQC D++ML+ L+ +AE+ GNPLWGL GPHDAP+YD+ PNS+SF
Sbjct: 260 SHQH---NAKLSGAGEFQCYDKHMLSALKGYAESTGNPLWGLGGPHDAPAYDQQPNSSSF 316

Query: 182 FKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTR 241
           F D G SWES YGDFFLSWYSS L SH + +LS+ASS F   GV + GK+PL+H W+K R
Sbjct: 317 FSDGG-SWESQYGDFFLSWYSSLLTSHADRVLSVASSAFSGIGVPLCGKLPLLHQWHKLR 375

Query: 242 SHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQI 301
           SHPSELTAG Y++  +D Y A+AE+FAKNSC+MI+PGMDLSDEHQ  ES SSPESLL  I
Sbjct: 376 SHPSELTAGFYSSNGQDRYEAIAEIFAKNSCRMIIPGMDLSDEHQSPESLSSPESLLGHI 435

Query: 302 RTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-VDLFTYQRMGAYFFSPEHFPSF 360
           +T+C K GV VSGQNSS T  PGGFE++ +NL  ENV +DLFTYQRMGA FFSPEHF +F
Sbjct: 436 KTSCKKQGVVVSGQNSS-TPVPGGFERIVENLKDENVGIDLFTYQRMGALFFSPEHFHAF 494

Query: 361 TKFVRNLNQLELHGDDLPVEEEV 383
           T FVRNL+Q EL  DD   E EV
Sbjct: 495 TVFVRNLSQFELSSDDQASEAEV 517

Arabidopsis thaliana (taxid: 3702)
>sp|O23553|BAM3_ARATH Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3 Back     alignment and function description
>sp|Q9LIR6|BAM1_ARATH Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FM68|BAM4_ARATH Inactive beta-amylase 4, chloroplastic OS=Arabidopsis thaliana GN=BAM4 PE=2 SV=1 Back     alignment and function description
>sp|O65258|BAM2_ARATH Beta-amylase 2, chloroplastic OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=2 Back     alignment and function description
>sp|Q8L762|BAM6_ARATH Beta-amylase 6 OS=Arabidopsis thaliana GN=BAM6 PE=2 SV=1 Back     alignment and function description
>sp|P10537|AMYB_IPOBA Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4 Back     alignment and function description
>sp|P25853|BAM5_ARATH Beta-amylase 5 OS=Arabidopsis thaliana GN=BAM5 PE=2 SV=1 Back     alignment and function description
>sp|O65015|AMYB_TRIRP Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1 Back     alignment and function description
>sp|P55005|AMYB_MAIZE Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
402171766 543 beta-amylase 4 [Citrus trifoliata] 1.0 0.736 0.985 0.0
225432390 541 PREDICTED: inactive beta-amylase 9 [Viti 1.0 0.739 0.747 0.0
147782696 541 hypothetical protein VITISV_030300 [Viti 1.0 0.739 0.747 0.0
255551639 545 Beta-amylase, putative [Ricinus communis 1.0 0.733 0.748 1e-180
5031285450 beta-amylase [Prunus armeniaca] 0.997 0.886 0.76 1e-177
357447457 535 Beta-amylase [Medicago truncatula] gi|35 0.997 0.745 0.738 1e-176
351726594 536 inactive beta-amylase-like [Glycine max] 0.995 0.742 0.736 1e-176
356549058 536 PREDICTED: inactive beta-amylase 9-like 0.995 0.742 0.721 1e-173
224102619437 predicted protein [Populus trichocarpa] 0.955 0.874 0.761 1e-172
449518855 531 PREDICTED: LOW QUALITY PROTEIN: inactive 0.987 0.743 0.697 1e-163
>gi|402171766|gb|AFQ33616.1| beta-amylase 4 [Citrus trifoliata] Back     alignment and taxonomy information
 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/400 (98%), Positives = 398/400 (99%)

Query: 1   MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSG 60
           MGKYNWSGY+AVAEMVEKIGLKLHVSLCFHALKQP IPLPDWVS+IGESQSSIFYTDQSG
Sbjct: 144 MGKYNWSGYVAVAEMVEKIGLKLHVSLCFHALKQPTIPLPDWVSRIGESQSSIFYTDQSG 203

Query: 61  QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRY 120
           QQFKGCLS+AVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRY
Sbjct: 204 QQFKGCLSMAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRY 263

Query: 121 PSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNS 180
           PSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNS
Sbjct: 264 PSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNS 323

Query: 181 FFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKT 240
           FFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFG+TGVSIYGKIPLIHSWYKT
Sbjct: 324 FFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGKTGVSIYGKIPLIHSWYKT 383

Query: 241 RSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQ 300
           RSHPSELTAG YNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQ
Sbjct: 384 RSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQ 443

Query: 301 IRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSF 360
           IRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSF
Sbjct: 444 IRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSF 503

Query: 361 TKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQVQAA 400
           TKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQVQAA
Sbjct: 504 TKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQVQAA 543

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432390|ref|XP_002276777.1| PREDICTED: inactive beta-amylase 9 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147782696|emb|CAN66037.1| hypothetical protein VITISV_030300 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551639|ref|XP_002516865.1| Beta-amylase, putative [Ricinus communis] gi|223543953|gb|EEF45479.1| Beta-amylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|5031285|gb|AAD38148.1|AF139501_1 beta-amylase [Prunus armeniaca] Back     alignment and taxonomy information
>gi|357447457|ref|XP_003594004.1| Beta-amylase [Medicago truncatula] gi|355483052|gb|AES64255.1| Beta-amylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|351726594|ref|NP_001236364.1| inactive beta-amylase-like [Glycine max] gi|59668410|emb|CAI39245.1| beta-amylase [Glycine max] Back     alignment and taxonomy information
>gi|356549058|ref|XP_003542915.1| PREDICTED: inactive beta-amylase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|224102619|ref|XP_002312750.1| predicted protein [Populus trichocarpa] gi|222852570|gb|EEE90117.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449518855|ref|XP_004166451.1| PREDICTED: LOW QUALITY PROTEIN: inactive beta-amylase 9-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
TAIR|locus:2180029536 BMY3 "beta-amylase 3" [Arabido 0.967 0.722 0.652 2.7e-139
TAIR|locus:2130504548 CT-BMY "chloroplast beta-amyla 0.95 0.693 0.4 1.9e-74
TAIR|locus:2076086575 BAM1 "beta-amylase 1" [Arabido 0.967 0.673 0.398 5.9e-73
TAIR|locus:2162152531 BAM4 "beta-amylase 4" [Arabido 0.915 0.689 0.387 1.4e-69
TAIR|locus:2127033542 BAM2 "beta-amylase 2" [Arabido 0.91 0.671 0.364 4.1e-65
TAIR|locus:2062535577 BAM6 "beta-amylase 6" [Arabido 0.907 0.629 0.343 1.6e-61
TAIR|locus:2129810498 BAM5 "beta-amylase 5" [Arabido 0.975 0.783 0.321 5.7e-59
TAIR|locus:2050720691 BAM7 "beta-amylase 7" [Arabido 0.902 0.522 0.342 1.4e-57
TAIR|locus:2158455689 BMY2 "beta-amylase 2" [Arabido 0.9 0.522 0.371 3.6e-57
TAIR|locus:2180029 BMY3 "beta-amylase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1363 (484.9 bits), Expect = 2.7e-139, P = 2.7e-139
 Identities = 257/394 (65%), Positives = 312/394 (79%)

Query:     2 GKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQ 61
             GKY WSGYLAVAE+V+K+GLKLH SL FH  KQ +I LPDWV++IG+++  I++TD+ GQ
Sbjct:   140 GKYEWSGYLAVAEIVKKVGLKLHASLSFHGSKQTEIGLPDWVAKIGDAEPGIYFTDRYGQ 199

Query:    62 QFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYP 121
             Q+K CLS AVDD+PVLDGKTP++VY+ FCESFKS+F  +MG TITGI++GLGPDGEL+YP
Sbjct:   200 QYKDCLSFAVDDVPVLDGKTPMEVYRGFCESFKSAFADYMGNTITGITLGLGPDGELKYP 259

Query:   122 SHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSF 181
             SH   AK S   G GEFQC D++ML+ L+ +AE+ GNPLWGL GPHDAP+YD+ PNS+SF
Sbjct:   260 SHQHNAKLS---GAGEFQCYDKHMLSALKGYAESTGNPLWGLGGPHDAPAYDQQPNSSSF 316

Query:   182 FKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTR 241
             F D GGSWES YGDFFLSWYSS L SH + +LS+ASS F   GV + GK+PL+H W+K R
Sbjct:   317 FSD-GGSWESQYGDFFLSWYSSLLTSHADRVLSVASSAFSGIGVPLCGKLPLLHQWHKLR 375

Query:   242 SHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQI 301
             SHPSELTAG Y++  +D Y A+AE+FAKNSC+MI+PGMDLSDEHQ  ES SSPESLL  I
Sbjct:   376 SHPSELTAGFYSSNGQDRYEAIAEIFAKNSCRMIIPGMDLSDEHQSPESLSSPESLLGHI 435

Query:   302 RTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-VDLFTYQRMGAYFFSPEHFPSF 360
             +T+C K GV VSGQNSS T  PGGFE++ +NL  ENV +DLFTYQRMGA FFSPEHF +F
Sbjct:   436 KTSCKKQGVVVSGQNSS-TPVPGGFERIVENLKDENVGIDLFTYQRMGALFFSPEHFHAF 494

Query:   361 TKFVRNLNQLELHGDDLPVEEEV-TESVHTNANT 393
             T FVRNL+Q EL  DD   E EV  E+    + T
Sbjct:   495 TVFVRNLSQFELSSDDQASEAEVEAETASIGSGT 528
GO:0000272 "polysaccharide catabolic process" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016161 "beta-amylase activity" evidence=IEA;ISS
GO:0043169 "cation binding" evidence=IEA
TAIR|locus:2130504 CT-BMY "chloroplast beta-amylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076086 BAM1 "beta-amylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162152 BAM4 "beta-amylase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127033 BAM2 "beta-amylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062535 BAM6 "beta-amylase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129810 BAM5 "beta-amylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050720 BAM7 "beta-amylase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158455 BMY2 "beta-amylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VYW2BAM9_ARATHNo assigned EC number0.65790.94250.7033yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1LOW CONFIDENCE prediction!
3rd Layer3.2.1.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019825001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (541 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
PLN02803548 PLN02803, PLN02803, beta-amylase 1e-108
PLN00197573 PLN00197, PLN00197, beta-amylase; Provisional 2e-99
PLN02161531 PLN02161, PLN02161, beta-amylase 1e-94
PLN02801517 PLN02801, PLN02801, beta-amylase 8e-86
PLN02905702 PLN02905, PLN02905, beta-amylase 2e-80
PLN02705681 PLN02705, PLN02705, beta-amylase 4e-73
pfam01373399 pfam01373, Glyco_hydro_14, Glycosyl hydrolase fami 2e-59
>gnl|CDD|178400 PLN02803, PLN02803, beta-amylase Back     alignment and domain information 
 Score =  327 bits (840), Expect = e-108
 Identities = 151/375 (40%), Positives = 214/375 (57%), Gaps = 8/375 (2%)

Query: 2   GKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYT 56
            KYNW GY  + +MV+K GLKL V + FH           IPLP WV +       + YT
Sbjct: 139 MKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYT 198

Query: 57  DQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDG 116
           D+SG++    +SL  D LPVL G+TPIQVY ++  SF+  FK ++G  I  I +G+GP G
Sbjct: 199 DRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQVGMGPCG 258

Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
           ELRYPS+     + + PG+GEFQC D+ M   L+  AEA G   WG  GPHDA  Y + P
Sbjct: 259 ELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFP 318

Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
               FF+ + G+W + YG FFL WYS +L+ HG+ +L+ A   F  TG  + GK+  IH 
Sbjct: 319 EETGFFRRD-GTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHW 377

Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
            Y+TRSH +ELTAG YNT   DGY  +A MF+K+   +    M++ D  QP  +  SPE 
Sbjct: 378 HYRTRSHAAELTAGYYNTRNHDGYLPIARMFSKHGVVLNFTCMEMRDGEQPEHANCSPEG 437

Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGE--NVVDLFTYQRMGAYFFSP 354
           L+ Q++ A    G E++G+N+        F Q+      +  N +  FTY RM    F  
Sbjct: 438 LVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRSDSGNGLTAFTYLRMNKRLFEG 497

Query: 355 EHFPSFTKFVRNLNQ 369
           +++    +FV+N+++
Sbjct: 498 DNWRQLVEFVKNMSE 512

Length = 548
>gnl|CDD|215099 PLN00197, PLN00197, beta-amylase; Provisional Back     alignment and domain information
>gnl|CDD|177820 PLN02161, PLN02161, beta-amylase Back     alignment and domain information
>gnl|CDD|215431 PLN02801, PLN02801, beta-amylase Back     alignment and domain information
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase Back     alignment and domain information
>gnl|CDD|178307 PLN02705, PLN02705, beta-amylase Back     alignment and domain information
>gnl|CDD|216462 pfam01373, Glyco_hydro_14, Glycosyl hydrolase family 14 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 400
PLN00197573 beta-amylase; Provisional 100.0
PLN02803548 beta-amylase 100.0
PLN02801517 beta-amylase 100.0
PLN02161531 beta-amylase 100.0
PLN02905702 beta-amylase 100.0
PLN02705681 beta-amylase 100.0
PF01373402 Glyco_hydro_14: Glycosyl hydrolase family 14; Inte 100.0
PF02449374 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0 98.5
PF01301319 Glyco_hydro_35: Glycosyl hydrolases family 35; Int 94.0
smart00633254 Glyco_10 Glycosyl hydrolase family 10. 93.58
COG3693345 XynA Beta-1,4-xylanase [Carbohydrate transport and 83.32
PF00331320 Glyco_hydro_10: Glycosyl hydrolase family 10; Inte 81.83
>PLN00197 beta-amylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4e-173  Score=1326.59  Aligned_cols=396  Identities=40%  Similarity=0.703  Sum_probs=378.5

Q ss_pred             CCcccchhHHHHHHHHHHcCCcEEEEEEee-----cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccc
Q 015815            1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP   75 (400)
Q Consensus         1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH-----vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~p   75 (400)
                      |+||||+||++||+|||++|||||||||||     |||+|+||||+||++++++|||||||||+|+||+||||||||++|
T Consensus       158 p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~p  237 (573)
T PLN00197        158 PGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLP  237 (573)
T ss_pred             CCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceecccccccc
Confidence            899999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             ccCCCChhHHHHHHHHHHHHhhchhhcCceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHHH
Q 015815           76 VLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEA  155 (400)
Q Consensus        76 vl~GRTp~q~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~~  155 (400)
                      ||+||||||||+|||+|||++|++||+++|+||+|||||||||||||||+++|+|+||||||||||||||+++||++|++
T Consensus       238 vl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~  317 (573)
T PLN00197        238 VLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEA  317 (573)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEeccee
Q 015815          156 NGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIH  235 (400)
Q Consensus       156 ~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GIH  235 (400)
                      +|||+||++||||||+||+.|++|+||++++|+|+|+||||||+|||++||+||||||++|+.+|++++|+|++||||||
T Consensus       318 ~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIH  397 (573)
T PLN00197        318 AGKPEWGSTGPTDAGHYNNWPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIH  397 (573)
T ss_pred             hCCHhhcCCCCCCccccCCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccce
Confidence            99999999999999999999999999997778999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeecc
Q 015815          236 SWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQ  315 (400)
Q Consensus       236 Wwy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~GE  315 (400)
                      |||+|+||||||||||||+++||||+||++|||||+|+|+||||||+|.+||++++|+||+||+||+++|+++||+|+||
T Consensus       398 WwY~t~SHAAELTAGyYNt~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~PE~Lv~QV~~aA~~~Gv~vaGE  477 (573)
T PLN00197        398 WHYGTRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPLAGE  477 (573)
T ss_pred             eecCCCCchHhhccccccCCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCcEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcchHHHHHHhccC-------CCCccceEEeecCcccCCCCChhhHHHHHHHhccCCCCCCCCCCcchh-hhhh
Q 015815          316 NSSVTGAPGGFEQMKKNLFG-------ENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEV-TESV  387 (400)
Q Consensus       316 NAl~~~d~~~~~qi~~~~~~-------~~~~~~fTylRm~~~l~~~~n~~~F~~FV~~m~~~~~~~~~~~~~~~~-~~~~  387 (400)
                      |||+|||.++|+||+++...       ...+++||||||++.||+++||++|++|||+||++... +++|+++++ .+.+
T Consensus       478 NAL~r~D~~~~~qI~~~~~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~-~~~~~~~~~~~~~~  556 (573)
T PLN00197        478 NALPRYDDYAHEQILQASSLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKDS-HRCREQVEREAEHF  556 (573)
T ss_pred             ccccccChhHHHHHHHhcccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCCC-Cccchhcchhcccc
Confidence            99999999999999999642       12589999999999999999999999999999998775 899988666 4444


Q ss_pred             cccCCCccee
Q 015815          388 HTNANTNIQV  397 (400)
Q Consensus       388 ~~~~~~~~~~  397 (400)
                      ..+....+|.
T Consensus       557 ~~~~~~~~~e  566 (573)
T PLN00197        557 VHVTRPLVQE  566 (573)
T ss_pred             eecchhhHHH
Confidence            4444444443

>PLN02803 beta-amylase Back     alignment and domain information
>PLN02801 beta-amylase Back     alignment and domain information
>PLN02161 beta-amylase Back     alignment and domain information
>PLN02905 beta-amylase Back     alignment and domain information
>PLN02705 beta-amylase Back     alignment and domain information
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00633 Glyco_10 Glycosyl hydrolase family 10 Back     alignment and domain information
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
1fa2_A498 Crystal Structure Of Beta-Amylase From Sweet Potato 2e-64
1v3i_A495 The Roles Of Glu186 And Glu380 In The Catalytic Rea 3e-63
1q6g_A495 Crystal Structure Of Soybean Beta-Amylase Mutant (N 4e-63
1wds_A495 The Role Of An Inner Loop In The Catalytic Mechanis 7e-63
1q6c_A495 Crystal Structure Of Soybean Beta-Amylase Complexed 8e-63
1q6d_A495 Crystal Structure Of Soybean Beta-Amylase Mutant (M 8e-63
1wdr_A495 The Role Of An Inner Loop In The Catalytic Mechanis 9e-63
1wdq_A495 The Role Of An Inner Loop In The Catalytic Mechanis 1e-62
1q6e_A495 Crystal Structure Of Soybean Beta-Amylase Mutant (E 1e-62
2dqx_A495 Mutant Beta-Amylase (W55r) From Soy Bean Length = 4 1e-62
1uko_A495 Crystal Structure Of Soybean Beta-Amylase Mutant Su 1e-62
1ukp_A495 Crystal Structure Of Soybean Beta-Amylase Mutant Su 2e-62
1v3h_A495 The Roles Of Glu186 And Glu380 In The Catalytic Rea 2e-62
1b1y_A500 Sevenfold Mutant Of Barley Beta-Amylase Length = 50 5e-62
1btc_A491 Three-Dimensional Structure Of Soybean Beta-Amylase 1e-61
1bya_A495 Crystal Structures Of Soybean Beta-Amylase Reacted 1e-61
2xff_A535 Crystal Structure Of Barley Beta-Amylase Complexed 2e-60
3voc_A419 Crystal Structure Of The Catalytic Domain Of Beta-a 4e-20
1ven_A516 Crystal Structure Analysis Of Y164eMALTOSE OF BACIL 4e-15
1b90_A516 Bacillus Cereus Beta-Amylase Apo Form Length = 516 6e-15
1veo_A516 Crystal Structure Analysis Of Y164fMALTOSE OF BACIL 7e-15
1vep_A516 Crystal Structure Analysis Of Triple (T47mY164ET328 8e-15
1itc_A516 Beta-amylase From Bacillus Cereus Var. Mycoides Com 3e-14
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato Length = 498 Back     alignment and structure 
Iteration: 1

 Score =  243 bits (619), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 226/411 (54%), Gaps = 25/411 (6%)
Query: 3   KYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTD 57
           +Y+WS Y  + ++V+K GLK+   + FH           IP+P W+ QIG+    IFYT+
Sbjct: 67  QYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTN 126
Query: 58  QSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDG 116
           ++G + +  LSL VD+  +  G+T +++Y++F ESF+ +   F+    I  I +G G  G
Sbjct: 127 RAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAG 186
Query: 117 ELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESP 176
           ELRYPS+    +    PG+GEFQC D+ M+   ++  +  GN  W + G   A +Y+++P
Sbjct: 187 ELRYPSYPE-TQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPG-KGAGTYNDTP 244
Query: 177 NSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHS 236
           +   FF+ NG ++++  G FFL+WYS++LI HG+ +L  A+  F    V+I  K+  IH 
Sbjct: 245 DKTEFFRPNG-TYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHW 303
Query: 237 WYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 296
           WY   SH +ELTAG YN A RDGY  +A M A++   +    +++ D  QP E+ S+P+ 
Sbjct: 304 WYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQE 363
Query: 297 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDL----------FTYQR 346
           L+ Q+ ++  K  ++V+G+N+        + QM   L   N V+L           TY R
Sbjct: 364 LVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLKL-RPNGVNLNGPPKLKMSGLTYLR 422
Query: 347 MGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQV 397
           +       ++F  F KFV+     ++H D  P    ++ +V   +N+ I +
Sbjct: 423 LSDDLLQTDNFELFKKFVK-----KMHADLDPSPNAISPAVLERSNSAITI 468
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum Length = 495 Back     alignment and structure
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase Length = 495 Back     alignment and structure
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose Length = 495 Back     alignment and structure
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum Length = 495 Back     alignment and structure
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y) With Increased Ph Optimum At Ph 5.4 Length = 495 Back     alignment and structure
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean Length = 495 Back     alignment and structure
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region Length = 495 Back     alignment and structure
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region Length = 495 Back     alignment and structure
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase Length = 500 Back     alignment and structure
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodextrin Length = 491 Back     alignment and structure
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With Beta-Maltose And Maltal: Active Site Components And Their Apparent Role In Catalysis Length = 495 Back     alignment and structure
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With Acarbose Length = 535 Back     alignment and structure
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase From Paenibacillus Polymyxa Length = 419 Back     alignment and structure
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS Cereus Beta-Amylase At Ph 4.6 Length = 516 Back     alignment and structure
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form Length = 516 Back     alignment and structure
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS Cereus Beta-Amylase At Ph 4.6 Length = 516 Back     alignment and structure
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N) MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5 Length = 516 Back     alignment and structure
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed With Maltopentaose Length = 516 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
1fa2_A498 Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.3 1e-160
2xfr_A535 Beta-amylase; hydrolase, carbohydrate metabolism, 1e-158
1wdp_A495 Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.2 1e-158
1vem_A516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 1e-114
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1 Length = 498 Back     alignment and structure
 Score =  459 bits (1183), Expect = e-160
 Identities = 134/412 (32%), Positives = 220/412 (53%), Gaps = 23/412 (5%)

Query: 2   GKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYT 56
            +Y+WS Y  + ++V+K GLK+   + FH           IP+P W+ QIG+    IFYT
Sbjct: 66  KQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYT 125

Query: 57  DQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM-GTTITGISMGLGPD 115
           +++G + +  LSL VD+  +  G+T +++Y++F ESF+ +   F+    I  I +G G  
Sbjct: 126 NRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAA 185

Query: 116 GELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDES 175
           GELRYPS+    +    PG+GEFQC D+ M+   ++  +  GN  W       A +Y+++
Sbjct: 186 GELRYPSYPE-TQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWE-MPGKGAGTYNDT 243

Query: 176 PNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIH 235
           P+   FF+ NG  +++  G FFL+WYS++LI HG+ +L  A+  F    V+I  K+  IH
Sbjct: 244 PDKTEFFRPNGT-YKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIH 302

Query: 236 SWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPE 295
            WY   SH +ELTAG YN A RDGY  +A M A++   +    +++ D  QP E+ S+P+
Sbjct: 303 WWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQ 362

Query: 296 SLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQR 346
            L+ Q+ ++  K  ++V+G+N+        + QM   L    V         +   TY R
Sbjct: 363 ELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGLTYLR 422

Query: 347 MGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNANTNIQVQ 398
           +       ++F  F KFV+      +H D  P    ++ +V   +N+ I + 
Sbjct: 423 LSDDLLQTDNFELFKKFVKK-----MHADLDPSPNAISPAVLERSNSAITID 469
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A* Length = 535 Back     alignment and structure
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A* Length = 495 Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Length = 516 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
1wdp_A495 Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.2 100.0
1fa2_A498 Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.3 100.0
2xfr_A535 Beta-amylase; hydrolase, carbohydrate metabolism, 100.0
1vem_A516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 100.0
3tty_A 675 Beta-GAL, beta-galactosidase; TIM barrel, glycosid 97.78
3u7v_A552 Beta-galactosidase; structural genomics, PSI-biolo 97.48
1kwg_A 645 Beta-galactosidase; TIM barrel, glycoside hydrolas 97.36
1n82_A331 Xylanase, intra-cellular xylanase; hydrolase; 1.45 96.18
1ta3_B303 Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), 96.16
1i1w_A303 Endo-1,4-beta-xylanase; xylan degradation, hydrola 95.78
3d3a_A 612 Beta-galactosidase; protein structure initiative I 95.78
1ur1_A378 Endoxylanase; hydrolase, family 10, glycoside hydr 95.75
3emz_A331 Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 ba 95.75
1r85_A379 Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A 95.68
2d1z_A436 Endo-1,4-beta-D-xylanase; TIM-barrel, retaining en 95.51
2dep_A356 Xylanase B, thermostable celloxylanase; glycosidas 95.36
3niy_A341 Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.5 95.06
3u7b_A327 Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET 94.86
1v0l_A313 Endo-1,4-beta-xylanase A; glycoside hydrolase fami 94.75
1us2_A530 Xylanase10C, endo-beta-1,4-xylanase; hydrolase, ca 92.7
4f8x_A335 Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET 92.67
1w32_A348 Endo-1,4-beta-xylanase A precursor; mutant, calciu 91.71
3ahx_A453 Beta-glucosidase A; cellulases, glycosyl hydrolase 90.59
3fj0_A465 Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase 90.25
1e4i_A447 Beta-glucosidase; hydrolase, family 1 glycosyl hyd 90.21
4ekj_A500 Beta-xylosidase; TIM-barrel fold, hemicellulase, h 89.27
3thd_A 654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 89.07
3apg_A473 Beta-glucosidase; TIM barrel, hydrolase, sugar bin 89.04
1xyz_A347 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrola 88.95
1qox_A449 Beta-glucosidase; hydrolase, cellulose degradation 88.9
1fob_A334 Beta-1,4-galactanase; B/A barrel, glycosyl hydrola 88.54
3cui_A315 EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine 88.18
2o9p_A454 Beta-glucosidase B; family 1 glycoside hydrolase; 87.56
1nq6_A302 XYS1; glycoside hydrolase family 10, xylanase, xyl 86.8
2uwf_A356 Endoxylanase, alkaline active endoxylanase; hydrol 86.58
1gnx_A479 Beta-glucosidase; hydrolase, glycosyltransferase, 85.72
3ro8_A341 Endo-1,4-beta-xylanase; glycosyl hydrolase family 85.55
1cbg_A490 Cyanogenic beta-glucosidase; hydrolase (O-glycosyl 85.14
2dga_A565 Beta-glucosidase; alpha/beta barrel, hydrolase; 1. 85.05
4e8d_A 595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 84.95
1vff_A423 Beta-glucosidase; glycosyl hydrolase, membrane-bou 84.83
2j78_A468 Beta-glucosidase A; family 1, hydrolase, inhibitor 82.84
1ug6_A431 Beta-glycosidase; glucosidase, atomic resolution, 82.8
2e9l_A469 Cytosolic beta-glucosidase; novel cytosolic neutra 82.12
1qvb_A481 Beta-glycosidase; TIM-barrel, thermostable, hydrol 81.94
2jf7_A532 Strictosidine-O-beta-D-glucosidase; alkaloid, hydr 81.69
1w91_A503 Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 81.15
3og2_A 1003 Beta-galactosidase; TIM barrel domain, glycoside h 80.44
1v02_A565 Dhurrinase, dhurrinase-1; beta-glucosidase, dhurri 80.37
1v08_A512 Beta-glucosidase; glycoside hydrolase, dimboa-gluc 80.13
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A* Back     alignment and structure
Probab=100.00  E-value=7.4e-169  Score=1284.72  Aligned_cols=369  Identities=34%  Similarity=0.667  Sum_probs=361.4

Q ss_pred             CCcccchhHHHHHHHHHHcCCcEEEEEEee-----cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccc
Q 015815            1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP   75 (400)
Q Consensus         1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH-----vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~p   75 (400)
                      |++||||||++||+|||++|||||||||||     |||+|+||||+||++++++|||||||||+|+||+||||||||++|
T Consensus        64 P~~YdWsgY~~l~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~~~~~pDi~ftDr~G~rn~EyLSlg~D~~p  143 (495)
T 1wdp_A           64 PKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEP  143 (495)
T ss_dssp             TTCCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCSTTCSCCBCSCHHHHHHHHHCGGGEEECTTCCEEEEEECGGGTTCC
T ss_pred             CCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHhhccCCCcEEECCCCCcccccccccccccc
Confidence            899999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             ccCCCChhHHHHHHHHHHHHhhchhh-cCceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHH
Q 015815           76 VLDGKTPIQVYQEFCESFKSSFKPFM-GTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAE  154 (400)
Q Consensus        76 vl~GRTp~q~Y~dfm~SF~~~F~~~~-~~~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~  154 (400)
                      ||+||||||||+|||+|||++|++|| ++||+||+|||||||||||||||+++| |+||||||||||||||+++||++|+
T Consensus       144 vl~GRTpiq~Y~Dfm~SFr~~F~~~~~~~~I~eI~VGlGP~GELRYPSYp~~~g-W~fPGiGEFQCYDky~~~~Lk~aA~  222 (495)
T 1wdp_A          144 IFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVA  222 (495)
T ss_dssp             CBTTBCHHHHHHHHHHHHHHHTHHHHHTTCEEEEEECCSGGGBSSCCCSCGGGT-CCTTCCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCccccccccCCCCccccC-CCCCCcceeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999 789999999999999999999999988 9999999999999999999999999


Q ss_pred             HhCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEecce
Q 015815          155 ANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLI  234 (400)
Q Consensus       155 ~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GI  234 (400)
                      ++|||+||+  |||+|+||++|++|+||+++ |+|+|+||||||+|||++||+||||||++|+++|++++|+|++|||||
T Consensus       223 ~~G~~~WG~--P~dag~yn~~P~~t~FF~~~-G~w~s~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~~~~v~l~~KV~GI  299 (495)
T 1wdp_A          223 RAGHPEWEL--PDDAGKYNDVPESTGFFKSN-GTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGI  299 (495)
T ss_dssp             HTTCTTCCS--CSSSCCTTCCGGGSTTTSTT-SGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEECCCC
T ss_pred             HhCchhhCC--CCCCCccCCCCCCCCCcCCC-CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecee
Confidence            999999998  99999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeec
Q 015815          235 HSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSG  314 (400)
Q Consensus       235 HWwy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~G  314 (400)
                      ||||+|+|||||||||||||++||||+||++|||||+|+|+||||||+|.|||++++|+||+||+||+++|+++||+|+|
T Consensus       300 HWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~m~~rh~~~l~fTC~EM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aG  379 (495)
T 1wdp_A          300 HWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAG  379 (495)
T ss_dssp             CTTTTSTTCHHHHHHTCCCBTTBCSSHHHHHHHHTTTCEEEECCTTCCGGGSCGGGCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eeccCCCCChHHhhcccccCCCCCchHHHHHHHHHcCCeEEEEecCCCcCCCCcccCCCHHHHHHHHHHHHHHhCCceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcchHHHHHHhccCC---------CCccceEEeecCcccCCCCChhhHHHHHHHhccCCCC
Q 015815          315 QNSSVTGAPGGFEQMKKNLFGE---------NVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELH  373 (400)
Q Consensus       315 ENAl~~~d~~~~~qi~~~~~~~---------~~~~~fTylRm~~~l~~~~n~~~F~~FV~~m~~~~~~  373 (400)
                      ||||+|||.++|+||++++..+         .++++||||||++.||+++||++|++|||+||+....
T Consensus       380 ENAL~~~d~~a~~qI~~~~~~~~~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~  447 (495)
T 1wdp_A          380 ENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDY  447 (495)
T ss_dssp             ECSSCCCSHHHHHHHHHHHSTTCCCTTSSCSSCCSEEEESCCCHHHHSHHHHHHHHHHHHHHTTTCCC
T ss_pred             cccccccCHHHHHHHHHHhccccccccCCccCceeeEEEecCChhhCCchhHHHHHHHHHHHhcCCCc
Confidence            9999999999999999997543         2599999999999999999999999999999997664
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1 Back     alignment and structure
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A* Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Back     alignment and structure
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* Back     alignment and structure
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus} Back     alignment and structure
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Back     alignment and structure
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A Back     alignment and structure
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3 Back     alignment and structure
>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A* Back     alignment and structure
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A* Back     alignment and structure
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A Back     alignment and structure
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemica hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A Back     alignment and structure
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan degradation, family 10, structural genomics, NPPSFA; 1.80A {Clostridium stercorarium} Back     alignment and structure
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A Back     alignment and structure
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum} Back     alignment and structure
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A Back     alignment and structure
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate binding module, xylan degradation; HET: XYP; 1.85A {Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB: 1us3_A Back     alignment and structure
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens} Back     alignment and structure
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A Back     alignment and structure
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese enhancement, hydro; HET: 7PE; 1.90A {Clostridium cellulovorans} Back     alignment and structure
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A 1bgg_A* 1bga_A 1uyq_A* Back     alignment and structure
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides} Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Back     alignment and structure
>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis; 2.35A {Pyrococcus furiosus} Back     alignment and structure
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3 Back     alignment and structure
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus circulans} SCOP: c.1.8.4 Back     alignment and structure
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A Back     alignment and structure
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A* Back     alignment and structure
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A {Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A* 2o9r_A* Back     alignment and structure
>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,, hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3 Back     alignment and structure
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A* Back     alignment and structure
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP} SCOP: c.1.8.4 PDB: 1gon_A Back     alignment and structure
>3ro8_A Endo-1,4-beta-xylanase; glycosyl hydrolase family 10, GH10, (beta/alpha)8 fold, XYLA hydrolase; 1.34A {Paenibacillus SP} PDB: 3rdk_A 4e4p_A Back     alignment and structure
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A {Trifolium repens} SCOP: c.1.8.4 Back     alignment and structure
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A* 3aiw_A* Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Back     alignment and structure
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4 Back     alignment and structure
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase, polysaccharide degradation, transition state mimic, carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A* 1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A* 2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A* 2j7f_A* 2j7g_A* 2j7h_A* ... Back     alignment and structure
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural genomics/PR initiative, RSGI, structural genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4 PDB: 1np2_A Back     alignment and structure
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA; 1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X* Back     alignment and structure
>1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A {Thermosphaera aggregans} SCOP: c.1.8.4 Back     alignment and structure
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A {Rauvolfia serpentina} PDB: 2jf6_A Back     alignment and structure
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis, PEST defense, family GH1, hydrolase; 1.9A {Sorghum bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A* Back     alignment and structure
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor, PEST defense, family GH1, hydrolase, chloroplast, transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays} SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A* 1e1e_A 1e1f_A* 1h49_A* 1hxj_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 400
d1b1ya_500 c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare 1e-174
d1fa2a_498 c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea b 1e-174
d1wdpa1490 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine m 1e-173
d1vema2417 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus 1e-133
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 500 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: beta-Amylase
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  494 bits (1273), Expect = e-174
 Identities = 131/383 (34%), Positives = 203/383 (53%), Gaps = 19/383 (4%)

Query: 1   MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFY 55
              Y+WS Y  + E+V+K GLKL   + FH           IP+P WV  +G     IFY
Sbjct: 58  PKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFY 117

Query: 56  TDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM-GTTITGISMGLGP 114
           TD  G +    L+L VD+ P+  G++ +Q+Y ++  SF+ + K F+    I  I +GLGP
Sbjct: 118 TDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGP 177

Query: 115 DGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDE 174
            GELRYPS+ + +     PG+GEF C D+ +    +  A A G+P W    P+DA  Y++
Sbjct: 178 AGELRYPSYPQ-SHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWE--FPNDAGQYND 234

Query: 175 SPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLI 234
           +P    FF+DNG ++ S  G FFL+WYS+ LI HG+ +L  A+  F    V +  KI  +
Sbjct: 235 TPERTQFFRDNG-TYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGV 293

Query: 235 HSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSP 294
           H WYK  SH +ELTAG YN   RDGY  +A M  ++   +     ++ D  QP ++ S+P
Sbjct: 294 HWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQPPDAMSAP 353

Query: 295 ESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQ 345
           E L+ Q+ +A  + G+ VS +N+     P  +  + +N     +         +  FTY 
Sbjct: 354 EELVQQVLSAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYL 413

Query: 346 RMGAYFFSPEHFPSFTKFVRNLN 368
           R+       +++ +F  FV  ++
Sbjct: 414 RLSNQLVEGQNYVNFKTFVDRMH 436
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]} Length = 498 Back     information, alignment and structure
>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} Length = 490 Back     information, alignment and structure
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} Length = 417 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
d1wdpa1490 beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} 100.0
d1fa2a_498 beta-Amylase {Sweet potato (Ipomoea batatas) [TaxI 100.0
d1b1ya_500 beta-Amylase {Barley (Hordeum vulgare) [TaxId: 451 100.0
d1vema2417 Bacterial beta-amylase {Bacillus cereus [TaxId: 13 100.0
d1kwga2393 A4 beta-galactosidase {Thermus thermophilus [TaxId 98.01
d1r85a_371 Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 94.13
d1vbua1324 Xylanase {Thermotoga maritima [TaxId: 2336]} 93.52
d1ur1a_350 Xylanase {Cellvibrio mixtus [TaxId: 39650]} 93.28
d1n82a_330 Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId 93.26
d1ta3b_301 Xylanase A, catalytic core {Emericella nidulans (A 93.22
d1nq6a_302 Xylanase A, catalytic core {Streptomyces halstedii 92.19
d1xyza_320 Xylanase {Clostridium thermocellum, XynZ [TaxId: 1 87.57
d1v0la_302 Xylanase A, catalytic core {Streptomyces lividans 87.05
d1uhva2346 Beta-D-xylosidase, catalytic domain {Thermoanaerob 86.09
d1foba_334 Beta-1,4-galactanase {Fungus (Aspergillus aculeatu 80.6
>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: beta-Amylase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=7.7e-172  Score=1300.21  Aligned_cols=389  Identities=32%  Similarity=0.629  Sum_probs=374.7

Q ss_pred             CCcccchhHHHHHHHHHHcCCcEEEEEEee-----cCCCCCCCCChhhhhhcccCCCeeeecCCCCccCcccccccCccc
Q 015815            1 MGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-----ALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLP   75 (400)
Q Consensus         1 p~~ydWs~Y~~l~~mvr~~GLKl~~vmSFH-----vgD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSl~~D~~p   75 (400)
                      |++|||+||++||+|||++|||||||||||     |||+|+||||+||++++++|||||||||+|+||+||||||||++|
T Consensus        59 P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGD~~~IPLP~WV~~~g~~~pDi~ftDr~G~rn~E~lSl~~D~~p  138 (490)
T d1wdpa1          59 PKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEP  138 (490)
T ss_dssp             TTCCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCSTTCSCCBCSCHHHHHHHHHCGGGEEECTTCCEEEEEECGGGTTCC
T ss_pred             CCccChHHHHHHHHHHHHcCCeEEEEEeecccCCCCCcccccCCcHHHHhhhccCCCceeecCCCCcccceeeeeecccc
Confidence            899999999999999999999999999999     999999999999999999999999999999999999999999999


Q ss_pred             ccCCCChhHHHHHHHHHHHHhhchhhcC-ceeEEEecccCCCcCCCCCCcCCCCCCCCCCcccchhccHHHHHHHHHHHH
Q 015815           76 VLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAE  154 (400)
Q Consensus        76 vl~GRTp~q~Y~dfm~SF~~~F~~~~~~-~I~eI~VGlGP~GELRYPSY~~~~g~w~~PGiGEFQCYDky~l~~lk~~A~  154 (400)
                      ||+||||||||+|||+|||++|++||++ ||+||+|||||||||||||||+++| |+||||||||||||||+++||++|+
T Consensus       139 vl~GRTplq~Y~DFm~SFr~~F~~~~~~g~I~eI~VGlGP~GELRYPSYp~~~G-w~yPGiGEFQCYDky~~~~l~~aA~  217 (490)
T d1wdpa1         139 IFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVA  217 (490)
T ss_dssp             CBTTBCHHHHHHHHHHHHHHHTHHHHHTTCEEEEEECCSGGGBSSCCCSCGGGT-CCTTCCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHhccCCeEEEEEeccccCccccCCCCccccC-CcCCCcceeeeCCHHHHHHHHHHHH
Confidence            9999999999999999999999999977 9999999999999999999999999 9999999999999999999999999


Q ss_pred             HhCCCCcCCCCCCCCCCCCCCCCCCcccccCCCCcccccchhhHHHhHHhHhhHHHHHHHHHHhhcCCCCceEEEEecce
Q 015815          155 ANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLI  234 (400)
Q Consensus       155 ~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~gg~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~v~l~aKv~GI  234 (400)
                      ++|||+||  ||||||+||++|++|+||+++ |+|+|+||||||+|||++||+||||||++|+++|++++|+|+||||||
T Consensus       218 ~~G~~~Wg--~P~dag~yn~~P~~t~FF~~~-G~~~s~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GI  294 (490)
T d1wdpa1         218 RAGHPEWE--LPDDAGKYNDVPESTGFFKSN-GTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGI  294 (490)
T ss_dssp             HTTCTTCC--SCSSSCCTTCCGGGSTTTSTT-SGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEECCCC
T ss_pred             HhCCcccC--CCCcCccCCCCCCCCCCCCCC-CccccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeee
Confidence            99999997  699999999999999999987 899999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCChhhhcccccCCCCCCchHHHHHHHhhCCcEEEEeecccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeec
Q 015815          235 HSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSG  314 (400)
Q Consensus       235 HWwy~t~sHaAElTAGyYN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~s~Pe~Lv~qv~~aa~~~Gv~~~G  314 (400)
                      ||||+|+|||||||||||||++||||+|||+|||||+|+|+||||||+|++||++++|+||+||+||+++|+++||+|+|
T Consensus       295 HWwY~t~SHaAElTAGyYNt~~rDGY~~Ia~m~~rh~~~l~FTC~EM~d~eq~~~a~s~PE~Lv~QV~~aa~~~Gv~vaG  374 (490)
T d1wdpa1         295 HWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAG  374 (490)
T ss_dssp             CTTTTSTTCHHHHHHTCCCBTTBCSSHHHHHHHHTTTCEEEECCTTCCGGGSCGGGCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccCCCCCChHHHhccccCCCCCccHHHHHHHHHHcCCeEEEecccccccCCCccccCCHHHHHHHHHHHHHHcCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcchHHHHHHhccCCC---------CccceEEeecCcccCCCCChhhHHHHHHHhccCCCCCCCCCCcchhhh
Q 015815          315 QNSSVTGAPGGFEQMKKNLFGEN---------VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTE  385 (400)
Q Consensus       315 ENAl~~~d~~~~~qi~~~~~~~~---------~~~~fTylRm~~~l~~~~n~~~F~~FV~~m~~~~~~~~~~~~~~~~~~  385 (400)
                      ||||+|||.++|+||+++++...         ++++||||||++.||+++||++|++|||+||++.....|--+..++..
T Consensus       375 ENAL~~~d~~~~~qI~~~~~~~~~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~  454 (490)
T d1wdpa1         375 ENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAIT  454 (490)
T ss_dssp             ECSSCCCSHHHHHHHHHHHSTTCCCTTSSCSSCCSEEEESCCCHHHHSHHHHHHHHHHHHHHTTTCCCCSCGGGGTCCCC
T ss_pred             eccchhcCchHHHHHHHhcccccCcCCCCcccccceeeeecCCHhhcCcchHHHHHHHHHHhccCCCCCCChHHcCCccC
Confidence            99999999999999999965431         588999999999999999999999999999998777544444456689


Q ss_pred             hhcccCCC
Q 015815          386 SVHTNANT  393 (400)
Q Consensus       386 ~~~~~~~~  393 (400)
                      +++||+.+
T Consensus       455 pl~~s~~~  462 (490)
T d1wdpa1         455 PLKPSAPK  462 (490)
T ss_dssp             CCCCCCCC
T ss_pred             ccccCCCC
Confidence            99998765
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]} Back     information, alignment and structure
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]} Back     information, alignment and structure
>d1vbua1 c.1.8.3 (A:517-840) Xylanase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId: 1422]} Back     information, alignment and structure
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]} Back     information, alignment and structure
>d1nq6a_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces halstedii [TaxId: 1944]} Back     information, alignment and structure
>d1xyza_ c.1.8.3 (A:) Xylanase {Clostridium thermocellum, XynZ [TaxId: 1515]} Back     information, alignment and structure
>d1v0la_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces lividans [TaxId: 1916]} Back     information, alignment and structure
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Back     information, alignment and structure
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure