BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015819
         (399 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 150/371 (40%), Gaps = 21/371 (5%)

Query: 41  IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA--SALET 98
           +A P++  +++Q  +  V  +M G +  + +++ ++A   AS+   S+L G+    AL  
Sbjct: 17  LATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIA---ASIWLPSILFGVGLLMALVP 73

Query: 99  LCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFM 158
           +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  ++ +   +M
Sbjct: 74  VVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYM 133

Query: 159 IWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSXXXXXXXXX 218
             ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY           
Sbjct: 134 HAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGV 193

Query: 219 XXXXSN----WLNVTFLAIYMKFSTACAESRV------PISMELFQGIGEFFHFAIPSAV 268
               +     W+ +  L  Y+  S   A  +V      P   EL +     F    P A 
Sbjct: 194 GCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR----LFRLGFPVAA 249

Query: 269 MICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGA 328
            +  E   F ++ L+  + P      +   V LN    ++  P  +GAAVS RV ++LG 
Sbjct: 250 ALFFEVTLFAVVALL--VAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGE 307

Query: 329 GNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSV 388
            + + A +A    +   +    + +      R     +++  + VV     +     +  
Sbjct: 308 QDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQ 367

Query: 389 IMDSLQGVFSG 399
            MD++Q V +G
Sbjct: 368 CMDAVQVVAAG 378


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 125/313 (39%), Gaps = 18/313 (5%)

Query: 34  EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
           E++    +A PM+   ++Q  +  V  +M G  G+  L++ A+  S A  T +   +G+ 
Sbjct: 12  EIRLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSS-AFATVYITFMGIM 70

Query: 94  SALETLCGQAYGAQQYQRIGTQTYTAI-FCLFLVCFPLSFLWIYAGKLLVLIGQDPQISH 152
           +AL  +  Q YGA +    G      I F L L  F +  +W         +     +  
Sbjct: 71  AALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLSDYVEG 130

Query: 153 EVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSXXX 212
            + ++M++   A+ A    + L  Y  S +    + L S AA  L++P+ +  VY     
Sbjct: 131 TMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGM 190

Query: 213 XXXXXXXXXXSN----WLNVTFLAIYM---KFSTA---CAESRVPISMELFQGIGEFFHF 262
                     +     W +   L IY+   KF       A+   P    +F+   + +  
Sbjct: 191 PALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLTAKFGKP-DWAVFK---QIWKI 246

Query: 263 AIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRV 322
             P  +   LE  +F  ++ +        +    + + L+ I  LY IP  +G+A + R+
Sbjct: 247 GAPIGLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGISLSGI--LYMIPQSVGSAGTVRI 304

Query: 323 SNELGAGNVQKAR 335
              LG     +AR
Sbjct: 305 GFSLGRREFSRAR 317


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,558,717
Number of Sequences: 62578
Number of extensions: 326265
Number of successful extensions: 720
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 3
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)