Query 015819
Match_columns 399
No_of_seqs 225 out of 1944
Neff 10.4
Searched_HMMs 13730
Date Mon Mar 25 03:04:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015819.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015819hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 68.7 31 0.0022 28.8 19.1 28 210-237 406-433 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 11.9 3.1E+02 0.023 21.2 19.4 10 211-220 376-385 (417)
3 d1nkzb_ f.3.1.1 (B:) Light-har 10.7 1.2E+02 0.0088 15.7 4.2 34 330-363 7-40 (41)
4 d1lghb_ f.3.1.1 (B:) Light-har 7.9 1.7E+02 0.013 15.5 2.8 33 330-362 10-42 (43)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 5.8 3.4E+02 0.025 16.9 8.8 18 256-273 70-87 (100)
6 d2yvxa3 f.57.1.1 (A:276-448) M 5.8 4.6E+02 0.034 18.4 6.1 33 101-133 66-98 (173)
7 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.3 6.9E+02 0.05 18.6 9.2 35 321-355 184-218 (290)
8 d1su0b_ d.224.1.2 (B:) IscU ho 4.2 5.2E+02 0.038 17.0 5.0 30 313-342 61-90 (136)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.8 5.1E+02 0.037 16.3 8.7 21 256-276 76-96 (107)
10 d2o3fa1 a.4.1.20 (A:1-83) Puta 3.5 4E+02 0.029 15.9 2.9 30 312-341 46-75 (83)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=68.74 E-value=31 Score=28.81 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=14.6
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHh
Q 015819 210 GLGNLGGALAIGISNWLNVTFLAIYMKF 237 (399)
Q Consensus 210 ~~g~~G~~~a~~i~~~~~~~~~~~~~~~ 237 (399)
+.|..+..+......++..++......+
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566665555555555555544444433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=11.88 E-value=3.1e+02 Score=21.16 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=4.4
Q ss_pred CccchhHHHH
Q 015819 211 LGNLGGALAI 220 (399)
Q Consensus 211 ~g~~G~~~a~ 220 (399)
.|.....+..
T Consensus 376 ~g~~~~~~~~ 385 (417)
T d1pv7a_ 376 IGFQGAYLVL 385 (417)
T ss_dssp HCHHHHHHHH
T ss_pred HCHHHHHHHH
Confidence 4544444333
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=10.65 E-value=1.2e+02 Score=15.66 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 015819 330 NVQKARVAVYAVIFMAVTETIVVSATLFASRRVF 363 (399)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 363 (399)
+.++..+..-.+.++...+.++.=++.+...|++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4578888888888888888887777777776654
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=7.93 E-value=1.7e+02 Score=15.46 Aligned_cols=33 Identities=3% Similarity=-0.067 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015819 330 NVQKARVAVYAVIFMAVTETIVVSATLFASRRV 362 (399)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (399)
+.++..+....+......+.++.=++....+|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666777777777666666666666655554
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.82 E-value=3.4e+02 Score=16.90 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 015819 256 IGEFFHFAIPSAVMICLE 273 (399)
Q Consensus 256 ~~~~~~~~~p~~~~~~~~ 273 (399)
..|+.-.-+|..+-..+.
T Consensus 70 ~LEiiWTviP~lILi~l~ 87 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAIG 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 457778888877755543
No 6
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.82 E-value=4.6e+02 Score=18.42 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=20.6
Q ss_pred HhhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 015819 101 GQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL 133 (399)
Q Consensus 101 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (399)
+-..|+-+.++.++...+-...++..+..++++
T Consensus 66 ~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 66 ALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445456667777777777777777665544
No 7
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.30 E-value=6.9e+02 Score=18.58 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=23.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 015819 321 RVSNELGAGNVQKARVAVYAVIFMAVTETIVVSAT 355 (399)
Q Consensus 321 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (399)
-.++..|+++.+..++..--.++=+...+...+.+
T Consensus 184 EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi 218 (290)
T d2r6gg1 184 EAAALDGATPWQAFRLVLLPLSVPILAVVFILSFI 218 (290)
T ss_dssp HHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhh
Confidence 35777888888888887666666555555554444
No 8
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.23 E-value=5.2e+02 Score=17.01 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015819 313 GLGAAVSTRVSNELGAGNVQKARVAVYAVI 342 (399)
Q Consensus 313 ~i~~a~~~~~~~~~g~~~~~~~~~~~~~~~ 342 (399)
++++|...++++....++.+++.+......
T Consensus 61 ai~~ASasil~e~i~gk~~~e~~~l~~~~~ 90 (136)
T d1su0b_ 61 TISTASSSMMTDAVIGKSKEEALALADIFS 90 (136)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 678899999999998899998887655443
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.81 E-value=5.1e+02 Score=16.28 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 015819 256 IGEFFHFAIPSAVMICLEWWS 276 (399)
Q Consensus 256 ~~~~~~~~~p~~~~~~~~~~~ 276 (399)
..|+.-.-+|..+-..+...+
T Consensus 76 ~lEi~WTviP~lIL~~laipS 96 (107)
T d3ehbb2 76 PIEVIWTLVPVLILVAIGAFS 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457777778877655554333
No 10
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=3.49 E-value=4e+02 Score=15.93 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015819 312 YGLGAAVSTRVSNELGAGNVQKARVAVYAV 341 (399)
Q Consensus 312 ~~i~~a~~~~~~~~~g~~~~~~~~~~~~~~ 341 (399)
.+++.+...++.+.+|-+.+.+.|...+.-
T Consensus 46 ~~vS~sTi~Rf~kklG~~gf~e~k~~l~~e 75 (83)
T d2o3fa1 46 ANSSDAAVIRLCKSLGLKGFQDLKMRVAGD 75 (83)
T ss_dssp TTCCHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 367888899999999999999998766544
Done!