Query 015820
Match_columns 399
No_of_seqs 201 out of 1750
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 01:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02851 3-hydroxyisobutyryl-C 100.0 1.7E-69 3.7E-74 538.5 39.0 365 32-396 40-404 (407)
2 PLN02157 3-hydroxyisobutyryl-C 100.0 3.5E-69 7.6E-74 536.5 39.6 366 32-397 35-400 (401)
3 PLN02988 3-hydroxyisobutyryl-C 100.0 1.5E-67 3.4E-72 523.1 38.7 359 35-393 10-370 (381)
4 PLN02874 3-hydroxyisobutyryl-C 100.0 1.4E-66 3E-71 518.1 38.3 359 32-393 9-367 (379)
5 PRK05617 3-hydroxyisobutyryl-C 100.0 8.1E-64 1.8E-68 492.6 34.1 338 34-380 3-342 (342)
6 KOG1684 Enoyl-CoA hydratase [L 100.0 1.1E-63 2.5E-68 471.3 31.2 363 31-397 35-400 (401)
7 PRK05980 enoyl-CoA hydratase; 100.0 6.5E-54 1.4E-58 408.4 28.4 256 34-361 3-260 (260)
8 KOG1680 Enoyl-CoA hydratase [L 100.0 8.4E-55 1.8E-59 400.0 20.2 251 35-363 38-289 (290)
9 PRK09076 enoyl-CoA hydratase; 100.0 3E-53 6.5E-58 403.3 28.7 255 32-363 1-257 (258)
10 PRK08150 enoyl-CoA hydratase; 100.0 3.1E-53 6.6E-58 402.4 28.2 253 34-364 2-255 (255)
11 PRK05862 enoyl-CoA hydratase; 100.0 2.8E-53 6E-58 403.4 27.3 252 34-363 4-256 (257)
12 PRK06142 enoyl-CoA hydratase; 100.0 2.9E-53 6.3E-58 406.5 27.5 258 33-362 5-271 (272)
13 PRK08140 enoyl-CoA hydratase; 100.0 4.6E-53 1E-57 403.0 28.2 258 33-363 3-261 (262)
14 PRK09245 enoyl-CoA hydratase; 100.0 5.6E-53 1.2E-57 403.3 27.9 260 32-363 1-265 (266)
15 PRK09674 enoyl-CoA hydratase-i 100.0 4.7E-53 1E-57 401.3 27.1 252 34-363 2-254 (255)
16 PRK07657 enoyl-CoA hydratase; 100.0 6.8E-53 1.5E-57 401.4 28.2 256 32-363 1-259 (260)
17 PRK07799 enoyl-CoA hydratase; 100.0 8.8E-53 1.9E-57 401.3 28.8 256 33-363 4-262 (263)
18 PRK08258 enoyl-CoA hydratase; 100.0 8.2E-53 1.8E-57 404.2 28.7 260 32-363 15-276 (277)
19 PRK08139 enoyl-CoA hydratase; 100.0 9.8E-53 2.1E-57 401.3 28.7 256 32-363 9-265 (266)
20 PRK07658 enoyl-CoA hydratase; 100.0 8E-53 1.7E-57 400.3 27.3 253 35-363 3-256 (257)
21 TIGR02280 PaaB1 phenylacetate 100.0 9.6E-53 2.1E-57 399.5 27.5 254 36-363 1-255 (256)
22 PRK05809 3-hydroxybutyryl-CoA 100.0 1.2E-52 2.7E-57 399.7 28.2 255 33-363 3-259 (260)
23 PLN02664 enoyl-CoA hydratase/d 100.0 1.1E-52 2.3E-57 403.0 27.8 256 36-363 10-274 (275)
24 PRK06127 enoyl-CoA hydratase; 100.0 1.7E-52 3.7E-57 400.4 28.9 257 33-363 10-268 (269)
25 PRK08252 enoyl-CoA hydratase; 100.0 1.3E-52 2.8E-57 398.1 27.5 252 32-363 1-253 (254)
26 PLN02600 enoyl-CoA hydratase 100.0 1.1E-52 2.4E-57 397.8 26.9 247 41-363 2-250 (251)
27 PRK06563 enoyl-CoA hydratase; 100.0 1E-52 2.2E-57 399.1 26.4 252 36-363 1-254 (255)
28 PRK07511 enoyl-CoA hydratase; 100.0 2.5E-52 5.4E-57 397.5 28.2 256 34-362 3-259 (260)
29 PRK05995 enoyl-CoA hydratase; 100.0 2E-52 4.4E-57 398.6 27.6 258 33-364 3-262 (262)
30 PRK08138 enoyl-CoA hydratase; 100.0 2.5E-52 5.3E-57 397.7 28.1 253 33-363 6-260 (261)
31 PRK05981 enoyl-CoA hydratase; 100.0 2.5E-52 5.4E-57 398.8 27.5 260 32-363 2-265 (266)
32 PRK07659 enoyl-CoA hydratase; 100.0 4.9E-52 1.1E-56 395.5 26.9 253 34-363 6-259 (260)
33 PRK06494 enoyl-CoA hydratase; 100.0 6.3E-52 1.4E-56 394.5 27.3 253 32-363 2-258 (259)
34 PRK09120 p-hydroxycinnamoyl Co 100.0 1.1E-51 2.3E-56 395.9 28.3 254 31-355 5-262 (275)
35 PRK07468 enoyl-CoA hydratase; 100.0 1.2E-51 2.6E-56 393.2 27.7 257 33-363 3-261 (262)
36 PRK05674 gamma-carboxygeranoyl 100.0 8.3E-52 1.8E-56 394.7 26.3 257 33-363 4-263 (265)
37 PRK06688 enoyl-CoA hydratase; 100.0 1E-51 2.2E-56 393.2 26.6 255 32-363 3-258 (259)
38 PRK05864 enoyl-CoA hydratase; 100.0 1.6E-51 3.5E-56 395.1 27.5 263 30-364 5-275 (276)
39 TIGR01929 menB naphthoate synt 100.0 1.2E-51 2.5E-56 392.6 25.9 254 34-363 2-258 (259)
40 PRK06210 enoyl-CoA hydratase; 100.0 1.2E-51 2.7E-56 395.3 26.1 259 33-363 4-271 (272)
41 TIGR03210 badI 2-ketocyclohexa 100.0 1.4E-51 2.9E-56 391.4 26.1 252 33-363 1-255 (256)
42 PRK06495 enoyl-CoA hydratase; 100.0 1.9E-51 4E-56 390.8 27.0 254 32-363 2-256 (257)
43 PRK07327 enoyl-CoA hydratase; 100.0 2.3E-51 5E-56 392.4 27.7 255 31-363 8-267 (268)
44 PRK03580 carnitinyl-CoA dehydr 100.0 1.9E-51 4E-56 391.7 26.8 254 32-363 1-260 (261)
45 PRK07509 enoyl-CoA hydratase; 100.0 2.6E-51 5.7E-56 391.0 27.4 256 32-362 1-261 (262)
46 PRK06144 enoyl-CoA hydratase; 100.0 2.5E-51 5.4E-56 390.9 27.2 253 32-363 6-261 (262)
47 PRK07260 enoyl-CoA hydratase; 100.0 2.3E-51 4.9E-56 389.9 26.5 251 34-355 2-253 (255)
48 PRK06143 enoyl-CoA hydratase; 100.0 3.3E-51 7.1E-56 388.7 26.6 246 34-355 6-254 (256)
49 PRK08260 enoyl-CoA hydratase; 100.0 6.1E-51 1.3E-55 394.7 27.1 259 33-364 3-278 (296)
50 PRK06072 enoyl-CoA hydratase; 100.0 1.2E-50 2.6E-55 383.3 27.8 247 36-364 2-248 (248)
51 PRK07396 dihydroxynaphthoic ac 100.0 9.9E-51 2.1E-55 388.9 26.9 257 32-364 11-269 (273)
52 PRK11423 methylmalonyl-CoA dec 100.0 1.1E-50 2.3E-55 386.3 26.2 253 33-363 3-260 (261)
53 PRK08259 enoyl-CoA hydratase; 100.0 7.8E-51 1.7E-55 385.7 24.8 250 32-359 1-251 (254)
54 PLN02888 enoyl-CoA hydratase 100.0 2E-50 4.3E-55 385.1 27.3 253 34-363 9-263 (265)
55 COG1024 CaiD Enoyl-CoA hydrata 100.0 2.1E-50 4.5E-55 383.7 27.3 253 32-361 3-257 (257)
56 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1.8E-50 3.9E-55 382.5 26.7 246 36-363 3-250 (251)
57 PRK05870 enoyl-CoA hydratase; 100.0 9.1E-51 2E-55 384.3 24.3 245 32-352 1-247 (249)
58 PRK07827 enoyl-CoA hydratase; 100.0 3.4E-50 7.4E-55 382.8 28.2 255 33-362 5-259 (260)
59 PRK06023 enoyl-CoA hydratase; 100.0 2.7E-50 5.8E-55 381.6 24.8 245 34-355 3-251 (251)
60 PRK07854 enoyl-CoA hydratase; 100.0 5.5E-50 1.2E-54 377.5 26.6 240 36-363 2-242 (243)
61 PRK07938 enoyl-CoA hydratase; 100.0 9.3E-50 2E-54 377.3 26.0 242 39-359 7-249 (249)
62 PF00378 ECH: Enoyl-CoA hydrat 100.0 3.3E-50 7.1E-55 379.8 22.5 244 37-355 1-245 (245)
63 PLN02921 naphthoate synthase 100.0 1.5E-49 3.2E-54 388.0 27.3 256 32-363 63-322 (327)
64 PRK12478 enoyl-CoA hydratase; 100.0 7.6E-50 1.6E-54 386.8 23.4 256 34-365 5-282 (298)
65 PRK07112 polyketide biosynthes 100.0 4.7E-49 1E-53 373.8 26.6 251 33-363 3-254 (255)
66 PLN03214 probable enoyl-CoA hy 100.0 2.8E-49 6.1E-54 379.4 24.7 253 29-355 6-263 (278)
67 PRK08321 naphthoate synthase; 100.0 4.4E-49 9.6E-54 382.3 26.3 259 33-364 22-298 (302)
68 PRK07110 polyketide biosynthes 100.0 2.4E-48 5.2E-53 367.7 25.6 244 32-352 3-247 (249)
69 PRK06190 enoyl-CoA hydratase; 100.0 1.1E-47 2.5E-52 364.5 26.3 247 33-352 3-250 (258)
70 TIGR03222 benzo_boxC benzoyl-C 100.0 4.4E-47 9.4E-52 390.5 25.2 255 35-365 259-545 (546)
71 PRK08184 benzoyl-CoA-dihydrodi 100.0 6.8E-47 1.5E-51 390.3 24.6 257 33-365 259-549 (550)
72 PRK05869 enoyl-CoA hydratase; 100.0 3.1E-46 6.7E-51 347.2 22.1 215 32-318 1-221 (222)
73 PRK08290 enoyl-CoA hydratase; 100.0 6.3E-45 1.4E-49 351.0 23.6 235 33-336 3-257 (288)
74 KOG1679 Enoyl-CoA hydratase [L 100.0 1.6E-45 3.5E-50 325.3 17.2 258 34-363 27-290 (291)
75 PRK08788 enoyl-CoA hydratase; 100.0 3E-44 6.5E-49 344.8 27.5 249 33-352 16-274 (287)
76 PRK11730 fadB multifunctional 100.0 2.3E-44 4.9E-49 385.0 26.5 287 35-355 7-296 (715)
77 PRK06213 enoyl-CoA hydratase; 100.0 1.6E-44 3.5E-49 337.6 21.4 226 32-332 1-228 (229)
78 PRK08272 enoyl-CoA hydratase; 100.0 3.8E-44 8.2E-49 348.2 23.9 218 32-319 8-247 (302)
79 KOG1681 Enoyl-CoA isomerase [L 100.0 2E-44 4.4E-49 321.1 16.0 261 32-362 17-290 (292)
80 TIGR03200 dearomat_oah 6-oxocy 100.0 7.1E-43 1.5E-47 338.7 26.0 286 44-355 38-328 (360)
81 PRK11154 fadJ multifunctional 100.0 6.4E-43 1.4E-47 373.8 27.2 284 32-355 3-294 (708)
82 TIGR02440 FadJ fatty oxidation 100.0 5E-42 1.1E-46 366.1 25.5 275 39-355 6-289 (699)
83 TIGR02437 FadB fatty oxidation 100.0 3.6E-41 7.9E-46 359.7 26.9 288 35-355 7-297 (714)
84 KOG1682 Enoyl-CoA isomerase [L 100.0 5.3E-41 1.2E-45 294.5 20.4 254 35-364 33-287 (287)
85 KOG0016 Enoyl-CoA hydratase/is 100.0 5.9E-41 1.3E-45 305.8 20.3 252 32-353 5-261 (266)
86 PLN02267 enoyl-CoA hydratase/i 100.0 1.1E-40 2.3E-45 313.4 21.4 183 36-221 2-189 (239)
87 TIGR02441 fa_ox_alpha_mit fatt 100.0 3.5E-40 7.5E-45 352.9 27.2 292 32-355 11-321 (737)
88 COG0447 MenB Dihydroxynaphthoi 100.0 2.7E-41 5.9E-46 299.0 13.1 257 31-362 15-276 (282)
89 cd06558 crotonase-like Crotona 100.0 3.1E-38 6.7E-43 287.5 19.2 190 36-227 1-191 (195)
90 TIGR03222 benzo_boxC benzoyl-C 100.0 6.4E-38 1.4E-42 322.7 21.9 197 30-227 7-222 (546)
91 PRK08184 benzoyl-CoA-dihydrodi 100.0 1E-36 2.2E-41 314.8 21.7 195 31-226 12-225 (550)
92 PF13766 ECH_C: 2-enoyl-CoA Hy 99.9 2.3E-21 5E-26 162.1 10.9 115 258-379 4-118 (118)
93 cd07014 S49_SppA Signal peptid 99.8 5.5E-19 1.2E-23 158.8 8.7 141 61-221 22-173 (177)
94 cd07020 Clp_protease_NfeD_1 No 99.8 4.1E-18 8.8E-23 154.5 11.2 144 45-218 2-166 (187)
95 cd07019 S49_SppA_1 Signal pept 99.6 2.5E-15 5.4E-20 138.8 8.6 103 43-165 1-105 (211)
96 cd00394 Clp_protease_like Case 99.5 1.1E-13 2.3E-18 122.3 10.2 134 58-214 8-161 (161)
97 cd07022 S49_Sppa_36K_type Sign 99.5 4.6E-13 1E-17 124.0 11.9 95 51-166 14-109 (214)
98 cd07016 S14_ClpP_1 Caseinolyti 99.4 6.2E-13 1.3E-17 117.5 8.6 128 61-214 15-160 (160)
99 cd07023 S49_Sppa_N_C Signal pe 99.4 2.6E-12 5.6E-17 118.5 10.8 153 44-218 2-201 (208)
100 TIGR00705 SppA_67K signal pept 99.3 5.2E-12 1.1E-16 132.8 11.3 157 40-216 306-510 (584)
101 TIGR00706 SppA_dom signal pept 99.3 1.3E-11 2.8E-16 113.7 11.4 148 44-220 2-198 (207)
102 cd07021 Clp_protease_NfeD_like 99.2 8.2E-11 1.8E-15 105.6 10.8 140 45-217 2-171 (178)
103 cd07018 S49_SppA_67K_type Sign 99.1 1.7E-10 3.6E-15 107.5 9.9 142 58-220 26-216 (222)
104 cd07015 Clp_protease_NfeD Nodu 98.7 1.6E-07 3.4E-12 83.7 11.2 136 58-217 10-165 (172)
105 PRK00277 clpP ATP-dependent Cl 98.6 5E-07 1.1E-11 82.8 10.6 133 57-217 39-196 (200)
106 cd07013 S14_ClpP Caseinolytic 98.5 6.7E-07 1.5E-11 79.2 10.7 132 58-214 9-162 (162)
107 KOG1683 Hydroxyacyl-CoA dehydr 98.5 7.1E-08 1.5E-12 93.6 3.6 168 43-217 66-240 (380)
108 PRK12553 ATP-dependent Clp pro 98.4 2E-06 4.4E-11 79.1 11.1 137 57-218 43-203 (207)
109 cd07017 S14_ClpP_2 Caseinolyti 98.3 2.5E-06 5.4E-11 76.2 9.0 132 58-214 18-171 (171)
110 PRK10949 protease 4; Provision 98.3 9.8E-06 2.1E-10 85.9 13.6 157 41-220 325-532 (618)
111 PRK12319 acetyl-CoA carboxylas 98.3 2.6E-05 5.7E-10 73.8 14.6 138 55-218 76-215 (256)
112 PF00574 CLP_protease: Clp pro 98.3 3.3E-06 7.1E-11 76.1 8.2 141 47-217 19-181 (182)
113 CHL00198 accA acetyl-CoA carbo 98.2 4.9E-05 1.1E-09 73.8 15.4 139 55-217 132-270 (322)
114 PRK14512 ATP-dependent Clp pro 98.2 1.4E-05 3.1E-10 72.9 10.4 132 58-217 32-188 (197)
115 CHL00028 clpP ATP-dependent Cl 98.1 2.7E-05 5.7E-10 71.2 11.4 136 57-218 38-197 (200)
116 TIGR00513 accA acetyl-CoA carb 98.1 7.4E-05 1.6E-09 72.5 14.9 137 55-217 129-267 (316)
117 TIGR00493 clpP ATP-dependent C 98.1 3.8E-05 8.3E-10 69.8 12.0 136 58-216 35-190 (191)
118 PLN03229 acetyl-coenzyme A car 98.1 6.9E-05 1.5E-09 79.1 15.1 139 55-217 220-358 (762)
119 PRK05724 acetyl-CoA carboxylas 98.1 9E-05 1.9E-09 72.0 14.2 139 55-217 129-267 (319)
120 PLN03230 acetyl-coenzyme A car 98.1 0.00013 2.8E-09 72.7 15.2 136 56-217 200-337 (431)
121 PRK07189 malonate decarboxylas 98.0 0.00043 9.4E-09 66.8 16.6 157 44-227 70-235 (301)
122 TIGR03133 malonate_beta malona 97.9 0.00027 5.8E-09 67.5 13.5 157 44-227 61-226 (274)
123 PRK14513 ATP-dependent Clp pro 97.8 0.00019 4.2E-09 65.5 11.2 136 57-220 35-195 (201)
124 PRK14514 ATP-dependent Clp pro 97.8 0.00019 4.1E-09 66.5 10.9 135 57-217 62-219 (221)
125 PF01972 SDH_sah: Serine dehyd 97.8 0.00025 5.3E-09 66.9 11.6 98 55-178 69-166 (285)
126 COG0616 SppA Periplasmic serin 97.8 0.0002 4.4E-09 70.2 11.4 133 63-219 82-264 (317)
127 PRK11778 putative inner membra 97.8 0.00017 3.6E-09 70.6 10.6 155 41-220 89-289 (330)
128 PRK12551 ATP-dependent Clp pro 97.7 0.00041 8.9E-09 63.2 11.9 140 57-219 33-192 (196)
129 TIGR03134 malonate_gamma malon 97.7 0.0014 3E-08 61.5 15.3 165 42-227 31-199 (238)
130 TIGR00515 accD acetyl-CoA carb 97.5 0.0022 4.7E-08 61.8 14.0 148 44-222 122-270 (285)
131 PRK05654 acetyl-CoA carboxylas 97.5 0.0021 4.5E-08 62.2 13.3 145 47-222 125-271 (292)
132 CHL00174 accD acetyl-CoA carbo 97.3 0.0058 1.3E-07 58.9 13.3 149 44-222 135-284 (296)
133 TIGR00705 SppA_67K signal pept 97.1 0.0044 9.6E-08 65.8 12.1 86 61-166 76-161 (584)
134 COG1030 NfeD Membrane-bound se 97.1 0.0093 2E-07 60.0 12.8 147 41-217 25-188 (436)
135 PF01343 Peptidase_S49: Peptid 97.0 0.00041 8.9E-09 60.8 2.9 95 127-221 3-144 (154)
136 PF01039 Carboxyl_trans: Carbo 97.0 0.011 2.3E-07 61.7 13.6 139 44-219 59-207 (493)
137 TIGR01117 mmdA methylmalonyl-C 96.9 0.023 5E-07 59.4 14.7 152 49-222 321-486 (512)
138 COG0740 ClpP Protease subunit 96.8 0.0049 1.1E-07 55.9 8.1 97 122-220 77-195 (200)
139 PRK12552 ATP-dependent Clp pro 96.8 0.021 4.6E-07 52.9 12.1 141 58-218 49-215 (222)
140 PLN02820 3-methylcrotonyl-CoA 96.4 0.049 1.1E-06 57.5 12.8 143 44-219 131-281 (569)
141 TIGR01117 mmdA methylmalonyl-C 96.2 0.051 1.1E-06 56.8 11.8 139 44-219 84-230 (512)
142 COG0777 AccD Acetyl-CoA carbox 95.9 0.14 3E-06 48.5 11.9 148 44-222 124-272 (294)
143 COG0825 AccA Acetyl-CoA carbox 95.8 0.0078 1.7E-07 57.2 3.5 87 122-217 180-266 (317)
144 PRK10949 protease 4; Provision 94.7 0.093 2E-06 56.1 7.8 86 61-166 95-180 (618)
145 PF01039 Carboxyl_trans: Carbo 94.0 0.5 1.1E-05 49.3 11.1 154 47-222 298-469 (493)
146 COG4799 Acetyl-CoA carboxylase 93.8 0.29 6.3E-06 50.8 8.9 96 50-161 99-194 (526)
147 PLN02157 3-hydroxyisobutyryl-C 93.4 0.13 2.8E-06 52.1 5.5 65 293-363 228-295 (401)
148 PLN02820 3-methylcrotonyl-CoA 91.9 2.1 4.5E-05 45.5 12.2 144 56-221 380-544 (569)
149 KOG0840 ATP-dependent Clp prot 91.8 0.7 1.5E-05 43.4 7.5 131 57-217 100-257 (275)
150 COG4799 Acetyl-CoA carboxylase 66.3 48 0.001 34.8 10.1 118 48-183 329-447 (526)
151 KOG0540 3-Methylcrotonyl-CoA c 65.6 56 0.0012 33.5 10.0 148 47-221 353-511 (536)
152 TIGR00237 xseA exodeoxyribonuc 61.6 13 0.00028 38.1 5.1 81 58-160 167-247 (432)
153 COG0074 SucD Succinyl-CoA synt 60.2 28 0.0006 33.5 6.5 74 40-142 144-240 (293)
154 PF02601 Exonuc_VII_L: Exonucl 53.0 28 0.00061 33.9 5.6 80 59-160 53-135 (319)
155 PTZ00187 succinyl-CoA syntheta 52.4 38 0.00082 33.3 6.3 15 128-142 250-264 (317)
156 smart00250 PLEC Plectin repeat 51.6 12 0.00026 24.3 1.8 18 196-213 18-35 (38)
157 PF13607 Succ_CoA_lig: Succiny 50.1 47 0.001 28.4 5.8 51 65-140 41-91 (138)
158 TIGR00377 ant_ant_sig anti-ant 45.1 75 0.0016 25.0 6.1 51 33-88 2-52 (108)
159 PF00681 Plectin: Plectin repe 42.6 9 0.0002 26.0 0.2 19 195-213 17-35 (45)
160 PRK00286 xseA exodeoxyribonucl 40.6 36 0.00078 34.9 4.4 79 59-160 174-252 (438)
161 PF06833 MdcE: Malonate decarb 40.4 30 0.00064 32.4 3.3 145 55-219 40-189 (234)
162 PF00549 Ligase_CoA: CoA-ligas 35.5 79 0.0017 27.6 5.0 61 65-142 60-120 (153)
163 COG1570 XseA Exonuclease VII, 33.0 62 0.0013 33.2 4.5 58 60-137 175-232 (440)
164 PLN02522 ATP citrate (pro-S)-l 32.2 1.1E+02 0.0024 32.9 6.4 52 66-142 210-262 (608)
165 TIGR02886 spore_II_AA anti-sig 29.8 2.2E+02 0.0049 22.2 6.6 50 37-91 2-51 (106)
166 PRK00964 tetrahydromethanopter 28.6 99 0.0022 28.7 4.6 67 35-101 18-95 (225)
167 PF13132 DUF3950: Domain of un 28.6 92 0.002 19.3 2.9 26 272-297 2-27 (30)
168 PLN00125 Succinyl-CoA ligase [ 27.0 1.6E+02 0.0036 28.6 6.2 12 130-141 233-244 (300)
169 KOG0403 Neoplastic transformat 26.0 1.1E+02 0.0025 31.5 4.9 110 259-393 348-469 (645)
170 PRK13505 formate--tetrahydrofo 25.8 1.2E+02 0.0026 32.2 5.2 69 77-149 323-391 (557)
171 PF01740 STAS: STAS domain; I 25.4 2.6E+02 0.0056 22.2 6.3 48 36-88 2-57 (117)
172 PF06258 Mito_fiss_Elm1: Mitoc 24.5 5.9E+02 0.013 24.8 9.6 132 30-167 95-244 (311)
173 PF00191 Annexin: Annexin; In 23.4 1.9E+02 0.004 20.6 4.6 36 294-329 20-55 (66)
174 COG3660 Predicted nucleoside-d 22.1 7.3E+02 0.016 24.0 9.8 128 31-162 108-255 (329)
175 PF03464 eRF1_2: eRF1 domain 2 22.0 2.3E+02 0.0051 23.6 5.5 45 44-88 25-83 (133)
176 PRK06091 membrane protein FdrA 21.7 2.3E+02 0.0049 30.2 6.3 22 121-142 270-291 (555)
177 KOG4391 Predicted alpha/beta h 21.4 39 0.00084 31.5 0.6 126 78-219 106-239 (300)
178 COG0528 PyrH Uridylate kinase 21.2 2.6E+02 0.0056 26.3 5.9 54 32-91 4-57 (238)
179 cd05560 Xcc1710_like Xcc1710_l 21.2 82 0.0018 25.7 2.5 40 359-398 30-75 (109)
180 PRK05368 homoserine O-succinyl 21.0 3.6E+02 0.0078 26.3 7.2 79 44-140 67-145 (302)
181 PRK14556 pyrH uridylate kinase 20.2 2.5E+02 0.0055 26.6 5.8 55 33-93 15-69 (249)
No 1
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.7e-69 Score=538.47 Aligned_cols=365 Identities=68% Similarity=1.170 Sum_probs=326.5
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
..+.|.++..+++++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++.+...........
T Consensus 40 ~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~ 119 (407)
T PLN02851 40 LQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEE 119 (407)
T ss_pred CCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999865322222344
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHH
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 191 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~ 191 (399)
...++...+.+.+.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+.
T Consensus 120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~ 199 (407)
T PLN02851 120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGE 199 (407)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHH
Confidence 55677788888899999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 271 (399)
+|+|||++++|+||+++||++++|+++++..+.+.+.++...++..++..+++|.....+...........|++||+.++
T Consensus 200 ~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~s 279 (407)
T PLN02851 200 YLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDT 279 (407)
T ss_pred HHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999878888887777778888889999976533333455666889999999999
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
+++|+++|+........+|++++++.|.+.||.|+++|.+.++.+...++.++++.|+++..+++....++||.|||+|.
T Consensus 280 v~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~ 359 (407)
T PLN02851 280 VEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRAR 359 (407)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 99999999975444457999999999999999999999999999999999999999999998876312279999999999
Q ss_pred hccCCCCCCCCCCCccCCCHHHHhcccCCCCCCCCCcccChhhhh
Q 015820 352 MVDRDIAPKWSPPSLEQVSEDMVDRYFSPLSESELDLELPTKLRE 396 (399)
Q Consensus 352 l~ek~r~p~~~~~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~ 396 (399)
||||+++|+|+|+++++|+++.|+.+|.|+..++++|++|+..++
T Consensus 360 LIDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~~l~~~~~~~~ 404 (407)
T PLN02851 360 LVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESELELPTAQRE 404 (407)
T ss_pred hcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccccCCccccc
Confidence 999999999999999999999999999999776668999985543
No 2
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=3.5e-69 Score=536.49 Aligned_cols=366 Identities=71% Similarity=1.162 Sum_probs=321.5
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
..+.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++...........
T Consensus 35 ~~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~ 114 (401)
T PLN02157 35 LDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDA 114 (401)
T ss_pred CCCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999998864321111222
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHH
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 191 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~ 191 (399)
...++...+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..++
T Consensus 115 ~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~ 194 (401)
T PLN02157 115 IREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGE 194 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHH
Confidence 34455566667888999999999999999999999999999999999999999999999999999999999999996699
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 271 (399)
+|++||++++|+||+++|||+++||++++.+..+.+.++.+.++..+...++.+.....+...........|..||+.++
T Consensus 195 ~L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d 274 (401)
T PLN02157 195 YLGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDT 274 (401)
T ss_pred HHHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998766666767777788888888877765432233445556789999999999
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
++|++++++.+......+|+++.++.|.+.||.|++.|.++++++...++.++++.|+++..+++....++||.|||+|.
T Consensus 275 ~~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~ 354 (401)
T PLN02157 275 VEEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRAR 354 (401)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 99999999864332346899999999999999999999999999998999999999999998877411258999999999
Q ss_pred hccCCCCCCCCCCCccCCCHHHHhcccCCCCCCCCCcccChhhhhc
Q 015820 352 MVDRDIAPKWSPPSLEQVSEDMVDRYFSPLSESELDLELPTKLREA 397 (399)
Q Consensus 352 l~ek~r~p~~~~~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
|+||+++|+|+|+++++|+++.|+.+|.|+.++..||++|+||||.
T Consensus 355 LiDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~~~~~~~~~ 400 (401)
T PLN02157 355 LIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDLPVKLRES 400 (401)
T ss_pred HcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCccccccchhhhhc
Confidence 9999999999999999999999999999997556789999999985
No 3
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1.5e-67 Score=523.09 Aligned_cols=359 Identities=49% Similarity=0.847 Sum_probs=314.9
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 015820 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (399)
Q Consensus 35 ~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (399)
.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++......+.......
T Consensus 10 ~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~ 89 (381)
T PLN02988 10 QVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN 89 (381)
T ss_pred ceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999998753221111122234
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHH
Q 015820 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 194 (399)
Q Consensus 115 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ 194 (399)
++...+.+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++|+
T Consensus 90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~l~ 169 (381)
T PLN02988 90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVG 169 (381)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHHHH
Confidence 45545556678899999999999999999999999999999999999999999999999999999999999998799999
Q ss_pred HcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHHH
Q 015820 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE 274 (399)
Q Consensus 195 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 274 (399)
|||++++|+||+++|||+++|+++++++...+++++...++..+...++.|..............+..|++||+.+++++
T Consensus 170 LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~ 249 (381)
T PLN02988 170 LTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEE 249 (381)
T ss_pred HcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999988888887777778888888888876542223445566899999999999999
Q ss_pred HHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhcc
Q 015820 275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD 354 (399)
Q Consensus 275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~e 354 (399)
|+++|+....+...+|++++++.|.+.||.|++.|.+.++++...++.++++.|+++..+++....++||.|||+|.|||
T Consensus 250 i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiD 329 (381)
T PLN02988 250 IISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVD 329 (381)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcC
Confidence 99999975433357999999999999999999999999999999999999999999999887511248999999999999
Q ss_pred CCCCCCCCCCCccCCCHHHHhcccCCCCCCC--CCcccChh
Q 015820 355 RDIAPKWSPPSLEQVSEDMVDRYFSPLSESE--LDLELPTK 393 (399)
Q Consensus 355 k~r~p~~~~~~~~~v~~~~v~~~~~~~~~~~--~~~~~~~~ 393 (399)
|+++|+|+|+++++|+++.|+.+|.|++.++ .+|++|++
T Consensus 330 Kd~~P~W~p~~l~~v~~~~v~~~f~~~~~~~~~~~l~~~~~ 370 (381)
T PLN02988 330 KDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEWDDLKLPPR 370 (381)
T ss_pred CCCCCCCCCCChhhCCHHHHHHHhCCCCccccccccCCccc
Confidence 9999999999999999999999999986643 25999983
No 4
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.4e-66 Score=518.12 Aligned_cols=359 Identities=44% Similarity=0.787 Sum_probs=316.4
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
.++.+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++...... ...
T Consensus 9 ~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~--~~~ 86 (379)
T PLN02874 9 AEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES--DDS 86 (379)
T ss_pred CCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc--chH
Confidence 345688889999999999999999999999999999999999999999999999999999999999987532111 112
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHH
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 191 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~ 191 (399)
....+..++.+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~ 166 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGE 166 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHH
Confidence 22334445566778899999999999999999999999999999999999999999999999999999999999996699
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 271 (399)
+|++||++++|+||+++|||+++||++++.+...++.++...+...++.++++|............+....|..||+.++
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 246 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDT 246 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999888776677777777778889999998887655555667777899999999999
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
+.++++++++..++..++||.+++++|+++||.|++.+|++++.+...++.++++.|.......+....++|++||++||
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 99999999987766678999999999999999999999999999888899999999988876654322378999999999
Q ss_pred hccCCCCCCCCCCCccCCCHHHHhcccCCCCCCCCCcccChh
Q 015820 352 MVDRDIAPKWSPPSLEQVSEDMVDRYFSPLSESELDLELPTK 393 (399)
Q Consensus 352 l~ek~r~p~~~~~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~ 393 (399)
+++|+|+|+|+++++++|++++|+++|.|++ ++|||++|++
T Consensus 327 lidK~r~P~w~~~~~~~v~~~~v~~~f~~~~-~~~~~~~~~~ 367 (379)
T PLN02874 327 VIDKDNAPKWNPSTLDEVTDEKVDLVFQPFK-AREELQLPEE 367 (379)
T ss_pred EEcCCCCCCCCCCChhhCCHHHHHHHhCCCC-CccccCCCcc
Confidence 8788799999999999999999999999974 5677999963
No 5
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=8.1e-64 Score=492.56 Aligned_cols=338 Identities=40% Similarity=0.713 Sum_probs=298.7
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHH
Q 015820 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC 112 (399)
Q Consensus 34 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (399)
+.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++............
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 3688899999999999999999999999999999999999999999999999999 899999999987542211111111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHH
Q 015820 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192 (399)
Q Consensus 113 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~ 192 (399)
..++...+.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~ 162 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence 13444556788889999999999999999999999999999999999999999999999999999999999998844999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCC-ChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCC
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD-DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 271 (399)
|++||+.++|+||+++|||++++|+++++...+++...... +.+..+.++.+|...... .+.......|++||++++
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~ 240 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPA--SELAAQRAWIDECFAGDT 240 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCc--chhHHHHHHHHHHhCCCC
Confidence 99999999999999999999999998887665555544433 455778888888887544 367788999999999999
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
+++|+++|++. .++||.+++++|+++||.+++.+|++++.....++++++..|...+...+. ++|++||+++|
T Consensus 241 ~~~~~~~l~~~----~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~egv~af 313 (342)
T PRK05617 241 VEDIIAALEAD----GGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLR---SPDFVEGVRAV 313 (342)
T ss_pred HHHHHHHHHhc----cHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---CCchhhccceE
Confidence 99999999987 358999999999999999999999999998888999999999999988887 99999999999
Q ss_pred hccCCCCCCCCCCCccCCCHHHHhcccCC
Q 015820 352 MVDRDIAPKWSPPSLEQVSEDMVDRYFSP 380 (399)
Q Consensus 352 l~ek~r~p~~~~~~~~~v~~~~v~~~~~~ 380 (399)
+++|+|+|+|+++++++|++++|+++|+|
T Consensus 314 l~ek~r~p~~~~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 314 LIDKDRNPKWSPATLEDVTPEDVEAFFAP 342 (342)
T ss_pred EEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence 75655899999999999999999999998
No 6
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-63 Score=471.28 Aligned_cols=363 Identities=51% Similarity=0.834 Sum_probs=337.3
Q ss_pred cCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCCh
Q 015820 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL 109 (399)
Q Consensus 31 ~~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 109 (399)
.....|.++.++....||||||+.+||||.+|+..+.-.|..++.++.+++||+.|.| ++||+|+|+........++..
T Consensus 35 ~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~ 114 (401)
T KOG1684|consen 35 DSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKET 114 (401)
T ss_pred ccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCc
Confidence 3456899999999999999999999999999999999999999999999999999995 999999999987776666777
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH
Q 015820 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189 (399)
Q Consensus 110 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~ 189 (399)
.....++...+.+...+.++.||.||.++|..||||++|+..--||||+|++.|.+||..+|++|+.|++++|+|+.|..
T Consensus 115 ~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~l 194 (401)
T KOG1684|consen 115 PEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYL 194 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCccHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCC-ChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD-DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 268 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 268 (399)
+.|+.|||.++++.||+..||.++.|+++.+..+++++...... +.+.+...+++|.....+.........+.|+.||+
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS 274 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence 99999999999999999999999999999999999999844444 45889999999999998888888889999999999
Q ss_pred CCCHHHHHHHHHhh-hccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhh
Q 015820 269 LDTVEEIIDSLESE-ASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG 347 (399)
Q Consensus 269 ~~~~~ei~~~l~~~-~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~eg 347 (399)
.++++||+++|++. ......+||++.++.|.+.||.|++.|.+.++++...++++++.+|+++..+... +.||.||
T Consensus 275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~---~~DF~EG 351 (401)
T KOG1684|consen 275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLM---RGDFCEG 351 (401)
T ss_pred cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---ccchhhh
Confidence 99999999988643 2456789999999999999999999999999999999999999999999998877 8999999
Q ss_pred HhhhhccCCCCCCCCCCCccCCCHHHHhcccCCCCCCCCCcccChhhhhc
Q 015820 348 VRARMVDRDIAPKWSPPSLEQVSEDMVDRYFSPLSESELDLELPTKLREA 397 (399)
Q Consensus 348 v~afl~ek~r~p~~~~~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
++|.|++|+++|+|+|.++++|++++|+.+|.|++ +.-||.||...|+-
T Consensus 352 vRA~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p-~~~eLklp~~~r~~ 400 (401)
T KOG1684|consen 352 VRAVLIDKDQNPKWDPASLADVTEDEVDNYFKPLP-SKSELKLPVWNRKT 400 (401)
T ss_pred hhheeecCCcCCCCCCcchhhcCHHHHHHhccCCC-CcccccCchhcccC
Confidence 99999999999999999999999999999999944 47788888888874
No 7
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-54 Score=408.43 Aligned_cols=256 Identities=29% Similarity=0.408 Sum_probs=229.8
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHH
Q 015820 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC 112 (399)
Q Consensus 34 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (399)
+.|.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++............
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK05980 3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL 82 (260)
T ss_pred ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence 4688999999999999999999999999999999999999999999999999999 799999999987542111112223
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HH
Q 015820 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (399)
Q Consensus 113 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~ 191 (399)
..+....+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 162 (260)
T PRK05980 83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL 162 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence 44555666788889999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 271 (399)
+|+++|++++|+||+++||||+|++++++.+...
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 196 (260)
T PRK05980 163 ELLLTGDAFSAERALEIGLVNAVVPHEELLPAAR---------------------------------------------- 196 (260)
T ss_pred HHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877653222
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
++++++++.+|.+++.+|++++.....++.+++..|...+...+. ++|++||+++|
T Consensus 197 ---------------------~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af 252 (260)
T PRK05980 197 ---------------------ALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAG---SADLREGLAAW 252 (260)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence 348899999999999999999998888899999999999888887 99999999999
Q ss_pred hccCCCCCCC
Q 015820 352 MVDRDIAPKW 361 (399)
Q Consensus 352 l~ek~r~p~~ 361 (399)
+ +| |+|+|
T Consensus 253 ~-~k-r~p~~ 260 (260)
T PRK05980 253 I-ER-RRPAY 260 (260)
T ss_pred h-cc-CCCCC
Confidence 9 88 89988
No 8
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=8.4e-55 Score=400.02 Aligned_cols=251 Identities=27% Similarity=0.356 Sum_probs=222.7
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 015820 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (399)
Q Consensus 35 ~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (399)
......+++|+.|+||||+++|+|+..|+.+|.+++..++.|+++.++||||.|++||+|+|++++.......-
T Consensus 38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~------ 111 (290)
T KOG1680|consen 38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDV------ 111 (290)
T ss_pred eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccc------
Confidence 44455678999999999999999999999999999999999999999999999999999999999875221100
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHH
Q 015820 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (399)
Q Consensus 115 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l 193 (399)
....+.+.+..+.+.+||+||+|||+|+|||++|+++||+|||+++|+|++|+.++|++|.+|++++|+|.+|.. |++|
T Consensus 112 ~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~ 191 (290)
T KOG1680|consen 112 SDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEM 191 (290)
T ss_pred ccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHH
Confidence 001122233334489999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHH
Q 015820 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273 (399)
Q Consensus 194 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 273 (399)
++||++++|+||+++||||+|||.+++. .++.
T Consensus 192 ~ltg~~~~AqeA~~~GlVn~Vvp~~~~l--~eAv---------------------------------------------- 223 (290)
T KOG1680|consen 192 ILTGRRLGAQEAKKIGLVNKVVPSGDAL--GEAV---------------------------------------------- 223 (290)
T ss_pred HHhcCcccHHHHHhCCceeEeecchhHH--HHHH----------------------------------------------
Confidence 9999999999999999999999998853 2222
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhc
Q 015820 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMV 353 (399)
Q Consensus 274 ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~ 353 (399)
+++++|+++||.+++..|++++.+.+.++.+++..|..++...+. .+|.+|||.+|.
T Consensus 224 -------------------~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~---~~d~~Eg~~~f~- 280 (290)
T KOG1680|consen 224 -------------------KLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFA---TEDRLEGMTAFA- 280 (290)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhh---hHHHHHHHHHhc-
Confidence 348999999999999999999999999999999999999988887 999999999999
Q ss_pred cCCCCCCCCC
Q 015820 354 DRDIAPKWSP 363 (399)
Q Consensus 354 ek~r~p~~~~ 363 (399)
+| |+|+|+.
T Consensus 281 ~k-r~~~~~k 289 (290)
T KOG1680|consen 281 EK-RKPKFSK 289 (290)
T ss_pred cc-CCccccc
Confidence 88 9999984
No 9
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-53 Score=403.32 Aligned_cols=255 Identities=22% Similarity=0.304 Sum_probs=229.1
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (399)
|+..+.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... +..
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~----~~~ 75 (258)
T PRK09076 1 MMIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG----DKA 75 (258)
T ss_pred CceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc----Chh
Confidence 45678999999999999999985 999999999999999999999999999999999 789999999987531 112
Q ss_pred HHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-
Q 015820 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (399)
Q Consensus 111 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~- 189 (399)
....+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 155 (258)
T PRK09076 76 VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGW 155 (258)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 2233445566788889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
+++|++||+.++|+||+++|||++|+|++++.+...
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 191 (258)
T PRK09076 156 AKRMILCGERVDAATALRIGLVEEVVEKGEAREAAL-------------------------------------------- 191 (258)
T ss_pred HHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877653222
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHh
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR 349 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~ 349 (399)
+++++|++.||.+++.+|++++.....++.+.++.|...+..++. ++|++||++
T Consensus 192 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~ 245 (258)
T PRK09076 192 -----------------------ALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFD---TEDQREGVN 245 (258)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CchHHHHHH
Confidence 348999999999999999999988778899999999999888876 899999999
Q ss_pred hhhccCCCCCCCCC
Q 015820 350 ARMVDRDIAPKWSP 363 (399)
Q Consensus 350 afl~ek~r~p~~~~ 363 (399)
+|+ +| |+|+|++
T Consensus 246 af~-~k-r~p~~~~ 257 (258)
T PRK09076 246 AFL-EK-RAPQWKN 257 (258)
T ss_pred HHh-cC-CCCCCCC
Confidence 999 88 9999974
No 10
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-53 Score=402.42 Aligned_cols=253 Identities=26% Similarity=0.270 Sum_probs=226.5
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 015820 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (399)
Q Consensus 34 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (399)
+.|.++++++|++||||||++.|+||.+|+.+|.++++.++ +++++|||||.|++||+|+|++++.... .....
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~----~~~~~ 75 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERD----AGEGM 75 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhcc----chhHH
Confidence 46788999999999999999999999999999999999987 7899999999999999999999875321 11222
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHH
Q 015820 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (399)
Q Consensus 114 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~ 192 (399)
.+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 3345567788889999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCH
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 272 (399)
|++||+.++|+||+++||||++||++++.+...
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 188 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAM----------------------------------------------- 188 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999887754322
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhh
Q 015820 273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM 352 (399)
Q Consensus 273 ~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl 352 (399)
+++++|+++||.+++.+|++++.....+++++++.|...+...+. ++|++||+++|+
T Consensus 189 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~af~ 245 (255)
T PRK08150 189 --------------------ELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQS---APEAKERLRAFL 245 (255)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh
Confidence 348999999999999999999988888899999999887777766 899999999999
Q ss_pred ccCCCCCCCCCC
Q 015820 353 VDRDIAPKWSPP 364 (399)
Q Consensus 353 ~ek~r~p~~~~~ 364 (399)
+| |+|+|+++
T Consensus 246 -~k-r~p~~~~~ 255 (255)
T PRK08150 246 -EK-KAAKVKPP 255 (255)
T ss_pred -cc-CCCCCCCC
Confidence 88 99999763
No 11
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-53 Score=403.40 Aligned_cols=252 Identities=25% Similarity=0.356 Sum_probs=226.8
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 015820 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (399)
Q Consensus 34 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (399)
+.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++... .. ..
T Consensus 4 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~----~~--~~ 77 (257)
T PRK05862 4 ETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL----SF--MD 77 (257)
T ss_pred ceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc----ch--hH
Confidence 4688899999999999999999999999999999999999999999999999999999999999987531 11 11
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHH
Q 015820 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (399)
Q Consensus 114 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~ 192 (399)
.+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 78 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T PRK05862 78 VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMD 157 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence 1223344567788999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCH
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 272 (399)
|++||+.++|+||+++||||+|+|++++.+...
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 190 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEAL----------------------------------------------- 190 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999877653222
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhh
Q 015820 273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM 352 (399)
Q Consensus 273 ~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl 352 (399)
+++++|++.+|.+++.+|++++.....++.+++..|.+.+...+. ++|+++|+++|+
T Consensus 191 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~~~~e~i~af~ 247 (257)
T PRK05862 191 --------------------AAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFA---TEDQKEGMAAFV 247 (257)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHh
Confidence 238899999999999999999998888999999999999888887 999999999999
Q ss_pred ccCCCCCCCCC
Q 015820 353 VDRDIAPKWSP 363 (399)
Q Consensus 353 ~ek~r~p~~~~ 363 (399)
+| |+|.|++
T Consensus 248 -~k-r~p~~~~ 256 (257)
T PRK05862 248 -EK-RKPVFKH 256 (257)
T ss_pred -cc-CCCCCCC
Confidence 98 8999975
No 12
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-53 Score=406.50 Aligned_cols=258 Identities=24% Similarity=0.314 Sum_probs=229.9
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhc-------
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN------- 105 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~------- 105 (399)
++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.....
T Consensus 5 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 84 (272)
T PRK06142 5 YESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL 84 (272)
T ss_pred cceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccccccc
Confidence 3568999999999999999999999999999999999999999999999999999999999999998753210
Q ss_pred cCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhc
Q 015820 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185 (399)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 185 (399)
.........+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 164 (272)
T PRK06142 85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRI 164 (272)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHH
Confidence 01112233344556778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHH-HHHHHHcCCCCCHHHHHHcCccceecCC-CChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHH
Q 015820 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV 263 (399)
Q Consensus 186 ~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (399)
+|.. +++|+++|++++|+||+++||||+|+++ +++.+...
T Consensus 165 ~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~-------------------------------------- 206 (272)
T PRK06142 165 IGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAH-------------------------------------- 206 (272)
T ss_pred hCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHH--------------------------------------
Confidence 9999 9999999999999999999999999996 55543222
Q ss_pred HhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCc
Q 015820 264 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD 343 (399)
Q Consensus 264 ~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d 343 (399)
+++++|++.||.+++.+|++++.....++.+++..|...+...+. ++|
T Consensus 207 -----------------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~---~~d 254 (272)
T PRK06142 207 -----------------------------ATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLP---SKD 254 (272)
T ss_pred -----------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---Ccc
Confidence 348899999999999999999988888899999999988888877 999
Q ss_pred HHhhHhhhhccCCCCCCCC
Q 015820 344 FYEGVRARMVDRDIAPKWS 362 (399)
Q Consensus 344 ~~egv~afl~ek~r~p~~~ 362 (399)
++||+++|+ +| |+|+|+
T Consensus 255 ~~egv~af~-~k-r~p~~~ 271 (272)
T PRK06142 255 LTEAIAAHM-EK-RPPEFT 271 (272)
T ss_pred HHHHHHHHh-cC-CCCCCC
Confidence 999999999 88 899996
No 13
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-53 Score=403.03 Aligned_cols=258 Identities=24% Similarity=0.329 Sum_probs=227.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (399)
++.+.++.+++|++||||||++.|++|.+|+.+|.+++++++ |+++++|||+|.|++||+|+|++++............
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG 81 (262)
T ss_pred CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence 457889999999999999999999999999999999999999 9999999999999999999999987531101111111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HH
Q 015820 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (399)
Q Consensus 113 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~ 191 (399)
..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~ 161 (262)
T PRK08140 82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL 161 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence 12222344577888999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 271 (399)
+|++||++++|+||+++||||+|+|++++.+...
T Consensus 162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 195 (262)
T PRK08140 162 GLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQ---------------------------------------------- 195 (262)
T ss_pred HHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877653222
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
+++++|++.||.+++.+|++++.....++.++++.|...+...+. ++|++||+++|
T Consensus 196 ---------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af 251 (262)
T PRK08140 196 ---------------------QLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGR---SADYAEGVSAF 251 (262)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence 348999999999999999999988888999999999998888776 99999999999
Q ss_pred hccCCCCCCCCC
Q 015820 352 MVDRDIAPKWSP 363 (399)
Q Consensus 352 l~ek~r~p~~~~ 363 (399)
+ +| |+|.|++
T Consensus 252 ~-~k-r~p~~~~ 261 (262)
T PRK08140 252 L-EK-RAPRFTG 261 (262)
T ss_pred h-cC-CCCCCCC
Confidence 9 88 8999974
No 14
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-53 Score=403.33 Aligned_cols=260 Identities=22% Similarity=0.345 Sum_probs=229.2
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhcc--CC
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNT-NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ--GK 108 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~-~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~--~~ 108 (399)
|+..+.++++++|++||||||++.|++|. +|+.+|.++++.++.|+++++|||+|.|++||+|.|++++...... ..
T Consensus 1 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 1 MTDFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred CCCceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 45678999999999999999999999995 9999999999999999999999999999999999999987532110 01
Q ss_pred hHH-HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcch
Q 015820 109 LEE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (399)
Q Consensus 109 ~~~-~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g 187 (399)
... ...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG 160 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence 111 1223334566788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhh
Q 015820 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC 266 (399)
Q Consensus 188 ~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (399)
.. +++|+++|++++|+||+++||||+|+|++++++...
T Consensus 161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------- 199 (266)
T PRK09245 161 MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAAR----------------------------------------- 199 (266)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------------
Confidence 99 999999999999999999999999999877654322
Q ss_pred cCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHh
Q 015820 267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 346 (399)
Q Consensus 267 f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~e 346 (399)
+++++|++.||.+++.+|++++.....++++.+..|...+...+. ++|++|
T Consensus 200 --------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e 250 (266)
T PRK09245 200 --------------------------ALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHH---TADHRE 250 (266)
T ss_pred --------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHhHHH
Confidence 248999999999999999999988888899999999888877776 899999
Q ss_pred hHhhhhccCCCCCCCCC
Q 015820 347 GVRARMVDRDIAPKWSP 363 (399)
Q Consensus 347 gv~afl~ek~r~p~~~~ 363 (399)
|+++|+ +| |+|.|+.
T Consensus 251 g~~af~-~k-r~p~~~~ 265 (266)
T PRK09245 251 AVDAFL-EK-RPPVFTG 265 (266)
T ss_pred HHHHHH-cC-CCCCCCC
Confidence 999999 88 9999974
No 15
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=4.7e-53 Score=401.31 Aligned_cols=252 Identities=23% Similarity=0.336 Sum_probs=226.9
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 015820 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (399)
Q Consensus 34 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (399)
..|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++... +. ..
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~--~~ 75 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----DL--AA 75 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----ch--hh
Confidence 4678889999999999999999999999999999999999999999999999999999999999987531 11 11
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHH
Q 015820 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (399)
Q Consensus 114 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~ 192 (399)
.+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 1223345677888999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCH
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 272 (399)
|+++|+.++|+||+++||||+|||++++.+...
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~----------------------------------------------- 188 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERAL----------------------------------------------- 188 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999877643222
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhh
Q 015820 273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM 352 (399)
Q Consensus 273 ~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl 352 (399)
+++++|++.||.+++.+|++++.....++.++++.|.+.+...+. ++|+++|+++|+
T Consensus 189 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~i~af~ 245 (255)
T PRK09674 189 --------------------QLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAA---TEDRHEGISAFL 245 (255)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh
Confidence 348999999999999999999998888899999999999888876 999999999999
Q ss_pred ccCCCCCCCCC
Q 015820 353 VDRDIAPKWSP 363 (399)
Q Consensus 353 ~ek~r~p~~~~ 363 (399)
+| |+|+|.+
T Consensus 246 -~k-r~p~~~~ 254 (255)
T PRK09674 246 -EK-RTPDFKG 254 (255)
T ss_pred -cc-CCCCCCC
Confidence 88 9999975
No 16
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-53 Score=401.38 Aligned_cols=256 Identities=22% Similarity=0.350 Sum_probs=231.3
Q ss_pred CCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCCh
Q 015820 32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL 109 (399)
Q Consensus 32 ~~~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 109 (399)
|.+.|.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... +.
T Consensus 1 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~----~~ 76 (260)
T PRK07657 1 MLQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM----NE 76 (260)
T ss_pred CCceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC----Ch
Confidence 456888886 789999999999999999999999999999999999999999999999 599999999987531 12
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH
Q 015820 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189 (399)
Q Consensus 110 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~ 189 (399)
.....+...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 156 (260)
T PRK07657 77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG 156 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH
Confidence 23344555667788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcC
Q 015820 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 268 (399)
Q Consensus 190 -a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 268 (399)
+++|+++|++++|+||+++||||+++|++++.+...
T Consensus 157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 193 (260)
T PRK07657 157 RAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI------------------------------------------- 193 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHH-------------------------------------------
Confidence 999999999999999999999999999877754322
Q ss_pred CCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhH
Q 015820 269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGV 348 (399)
Q Consensus 269 ~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv 348 (399)
+++++|+..+|.+++.+|++++.....++.+++..|...+...+. ++|++||+
T Consensus 194 ------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~ 246 (260)
T PRK07657 194 ------------------------EIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIP---TKDRLEGL 246 (260)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHhHHHHH
Confidence 348899999999999999999998888899999999999888887 99999999
Q ss_pred hhhhccCCCCCCCCC
Q 015820 349 RARMVDRDIAPKWSP 363 (399)
Q Consensus 349 ~afl~ek~r~p~~~~ 363 (399)
++|+ +| |+|+|+.
T Consensus 247 ~af~-~~-r~~~~~~ 259 (260)
T PRK07657 247 QAFK-EK-RKPMYKG 259 (260)
T ss_pred HHHh-cC-CCCCCCC
Confidence 9999 88 9999974
No 17
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.8e-53 Score=401.27 Aligned_cols=256 Identities=25% Similarity=0.311 Sum_probs=224.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (399)
++.+.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... . ....
T Consensus 4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~-~~~~ 81 (263)
T PRK07799 4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPP-G-DSFK 81 (263)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccc-c-chhh
Confidence 4578999999999999999999999999999999999999999999999999999999999999998764211 1 1111
Q ss_pred HH-H-HHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-
Q 015820 113 KD-F-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (399)
Q Consensus 113 ~~-~-~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~- 189 (399)
.. + ...+..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 82 ~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 82 DGSYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 01 1 1122223 346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
+++|++||++++|+||+++||||+|||++++.+...
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 196 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKAL-------------------------------------------- 196 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHH--------------------------------------------
Confidence 999999999999999999999999999987653222
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHh
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR 349 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~ 349 (399)
+++++|++.||.+++.+|++++.....++.++++.|.+.+...+. ++|+++|++
T Consensus 197 -----------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~ 250 (263)
T PRK07799 197 -----------------------ELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFL---SEDAKEGPR 250 (263)
T ss_pred -----------------------HHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CccHHHHHH
Confidence 248899999999999999999988888899999999998888876 999999999
Q ss_pred hhhccCCCCCCCCC
Q 015820 350 ARMVDRDIAPKWSP 363 (399)
Q Consensus 350 afl~ek~r~p~~~~ 363 (399)
+|+ +| |+|+|..
T Consensus 251 af~-~~-r~p~~~~ 262 (263)
T PRK07799 251 AFA-EK-RAPNFQG 262 (263)
T ss_pred HHH-cc-CCCCCCC
Confidence 999 88 8999975
No 18
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.2e-53 Score=404.21 Aligned_cols=260 Identities=21% Similarity=0.277 Sum_probs=230.8
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
....+.++.+++|++|+||||++.|+++.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.......+...
T Consensus 15 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~ 94 (277)
T PRK08258 15 EARHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPE 94 (277)
T ss_pred cccceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhH
Confidence 33478899999999999999999999999999999999999999999999999999999999999998743211112222
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccC-CCchhHHHhhcchHH-
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLPGHL- 189 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p-~~g~~~~L~r~~g~~- 189 (399)
...+....+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~ 174 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGR 174 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHH
Confidence 334455556788899999999999999999999999999999999999999999999999995 788999999999998
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
+++|+++|++++|+||+++||||+|++++++++...
T Consensus 175 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 210 (277)
T PRK08258 175 ASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQ-------------------------------------------- 210 (277)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877653222
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHh
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR 349 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~ 349 (399)
+++++|++.||.+++.+|++++.....++++.+..|...+..++. ++|++||++
T Consensus 211 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg~~ 264 (277)
T PRK08258 211 -----------------------ALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQ---TEDFRRAYE 264 (277)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CchHHHHHH
Confidence 348899999999999999999998888999999999999888887 999999999
Q ss_pred hhhccCCCCCCCCC
Q 015820 350 ARMVDRDIAPKWSP 363 (399)
Q Consensus 350 afl~ek~r~p~~~~ 363 (399)
+|+ +| |+|.|++
T Consensus 265 af~-ek-r~p~~~~ 276 (277)
T PRK08258 265 AFV-AK-RKPVFEG 276 (277)
T ss_pred HHh-cC-CCCCCCC
Confidence 999 98 9999974
No 19
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=9.8e-53 Score=401.31 Aligned_cols=256 Identities=21% Similarity=0.305 Sum_probs=229.7
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
..+.+.++.+++|++||||||+++|++|.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++... .....
T Consensus 9 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~ 85 (266)
T PRK08139 9 EAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAA---RGLAY 85 (266)
T ss_pred cCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcc---cchhH
Confidence 446889999999999999999999999999999999999999999999999999999999999999987531 11223
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
...++..+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +++|++++|.. +
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A 164 (266)
T PRK08139 86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA 164 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence 344455667788899999999999999999999999999999999999999999999999999775 56799999999 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|++||++++|+||+++||||+|+|++++++...
T Consensus 165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------- 199 (266)
T PRK08139 165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVA--------------------------------------------- 199 (266)
T ss_pred HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877754333
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+++++|++.||.+++.+|++++.....++++++..|...+...+. ++|++||+++
T Consensus 200 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~a 254 (266)
T PRK08139 200 ----------------------RLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMM---AEDAEEGIDA 254 (266)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CchHHHHHHH
Confidence 348999999999999999999998888999999999998888776 9999999999
Q ss_pred hhccCCCCCCCCC
Q 015820 351 RMVDRDIAPKWSP 363 (399)
Q Consensus 351 fl~ek~r~p~~~~ 363 (399)
|+ +| |+|+|..
T Consensus 255 f~-~k-r~p~~~~ 265 (266)
T PRK08139 255 FL-EK-RPPEWRG 265 (266)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 88 9999974
No 20
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8e-53 Score=400.32 Aligned_cols=253 Identities=24% Similarity=0.339 Sum_probs=228.5
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 015820 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (399)
Q Consensus 35 ~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (399)
.+.++.+++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... .......
T Consensus 3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~~~~~ 78 (257)
T PRK07658 3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVT---EAEQATE 78 (257)
T ss_pred eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccC---chhhHHH
Confidence 67889999999999999985 9999999999999999999999999999999999999999999875321 1122233
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHH
Q 015820 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (399)
Q Consensus 115 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l 193 (399)
+....+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 158 (257)
T PRK07658 79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM 158 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence 445567788899999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHH
Q 015820 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273 (399)
Q Consensus 194 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 273 (399)
+++|++++|+||+++||||+|++++++.+...
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 190 (257)
T PRK07658 159 MLTSEPITGAEALKWGLVNGVFPEETLLDDAK------------------------------------------------ 190 (257)
T ss_pred HHcCCCcCHHHHHHcCCcCeecChhHHHHHHH------------------------------------------------
Confidence 99999999999999999999999877653222
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhc
Q 015820 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMV 353 (399)
Q Consensus 274 ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~ 353 (399)
+++++|++.||.+++.+|++++.....++.++++.|...+..++. ++|++||+++|+
T Consensus 191 -------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~af~- 247 (257)
T PRK07658 191 -------------------KLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFT---SEDAKEGVQAFL- 247 (257)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH-
Confidence 348899999999999999999988888899999999999988887 999999999999
Q ss_pred cCCCCCCCCC
Q 015820 354 DRDIAPKWSP 363 (399)
Q Consensus 354 ek~r~p~~~~ 363 (399)
+| |+|+|++
T Consensus 248 ~k-r~p~~~~ 256 (257)
T PRK07658 248 EK-RKPSFSG 256 (257)
T ss_pred cC-CCCCCCC
Confidence 88 9999975
No 21
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=9.6e-53 Score=399.47 Aligned_cols=254 Identities=25% Similarity=0.333 Sum_probs=224.7
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 015820 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (399)
Q Consensus 36 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (399)
|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+ +++|||||.|++||+|+|++++..... ...+....+
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPG-GAPDLGRTI 78 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccc-cchhHHHHH
Confidence 457889999999999999999999999999999999999998 999999999999999999998753211 111111122
Q ss_pred HHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHHH
Q 015820 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (399)
Q Consensus 116 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l~ 194 (399)
...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 22335577788999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHHH
Q 015820 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE 274 (399)
Q Consensus 195 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 274 (399)
++|++++|+||+++|||++++|++++.+...
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------- 189 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAALMDEAQ------------------------------------------------- 189 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999877653222
Q ss_pred HHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhcc
Q 015820 275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD 354 (399)
Q Consensus 275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~e 354 (399)
+++++|++.||.+++.+|++++......+.++++.|...+...+. ++|++||+++|+ +
T Consensus 190 ------------------~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~-~ 247 (256)
T TIGR02280 190 ------------------ALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGR---SADYAEGVTAFL-D 247 (256)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHH-c
Confidence 348999999999999999999988888899999999998888877 999999999999 8
Q ss_pred CCCCCCCCC
Q 015820 355 RDIAPKWSP 363 (399)
Q Consensus 355 k~r~p~~~~ 363 (399)
| |+|+|++
T Consensus 248 k-r~p~~~~ 255 (256)
T TIGR02280 248 K-RNPQFTG 255 (256)
T ss_pred C-CCCCCCC
Confidence 8 9999974
No 22
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.2e-52 Score=399.68 Aligned_cols=255 Identities=27% Similarity=0.387 Sum_probs=230.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
+..+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... ....
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~----~~~~ 78 (260)
T PRK05809 3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL----NEEE 78 (260)
T ss_pred cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc----ChHH
Confidence 45788999999999999999999999999999999999999999999999999999 999999999987532 1122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
...+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 233444456788889999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|+++|+.++|+||+++||||+|+|++++.+..
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a---------------------------------------------- 192 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEA---------------------------------------------- 192 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999987664322
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
.+++++|++.||.+++.+|++++.....++.++++.|.+.+...+. ++|++||+++
T Consensus 193 ---------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~a 248 (260)
T PRK05809 193 ---------------------KALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFS---TEDQTEGMTA 248 (260)
T ss_pred ---------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 2348899999999999999999998888999999999999988887 9999999999
Q ss_pred hhccCCCCCCCCC
Q 015820 351 RMVDRDIAPKWSP 363 (399)
Q Consensus 351 fl~ek~r~p~~~~ 363 (399)
|+ +| |+|.|..
T Consensus 249 f~-~~-r~p~~~~ 259 (260)
T PRK05809 249 FV-EK-REKNFKN 259 (260)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 88 8999974
No 23
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.1e-52 Score=402.99 Aligned_cols=256 Identities=23% Similarity=0.318 Sum_probs=225.1
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhcc---CC----
Q 015820 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ---GK---- 108 (399)
Q Consensus 36 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~---~~---- 108 (399)
+..+.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... .+
T Consensus 10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 44455789999999999999999999999999999999999999999999999999999999987542110 01
Q ss_pred hHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchH
Q 015820 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (399)
Q Consensus 109 ~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~ 188 (399)
......+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 169 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY 169 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence 11223344555678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHcCCCCCHHHHHHcCccceecCC-CChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhh
Q 015820 189 L-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC 266 (399)
Q Consensus 189 ~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (399)
. +++|++||+.++|+||+++||||+|||+ +++.+...
T Consensus 170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~----------------------------------------- 208 (275)
T PLN02664 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVR----------------------------------------- 208 (275)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHH-----------------------------------------
Confidence 9 9999999999999999999999999995 55543222
Q ss_pred cCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHh
Q 015820 267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 346 (399)
Q Consensus 267 f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~e 346 (399)
+++++|++.||.+++.+|++++.....++.++++.|...+...+. ++|++|
T Consensus 209 --------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e 259 (275)
T PLN02664 209 --------------------------LIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLV---SDDLNE 259 (275)
T ss_pred --------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---ChhHHH
Confidence 348999999999999999999988888899999999888877776 999999
Q ss_pred hHhhhhccCCCCCCCCC
Q 015820 347 GVRARMVDRDIAPKWSP 363 (399)
Q Consensus 347 gv~afl~ek~r~p~~~~ 363 (399)
|+++|+ +| |+|.|++
T Consensus 260 g~~af~-ek-r~p~~~~ 274 (275)
T PLN02664 260 AVSAQI-QK-RKPVFAK 274 (275)
T ss_pred HHHHHh-cc-CCCCCCC
Confidence 999999 88 8999974
No 24
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-52 Score=400.37 Aligned_cols=257 Identities=23% Similarity=0.324 Sum_probs=230.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
.+.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... .....
T Consensus 10 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~--~~~~~ 87 (269)
T PRK06127 10 TGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR--SDAEA 87 (269)
T ss_pred CCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc--cchHH
Confidence 35688999999999999999999999999999999999999999999999999998 7999999999875321 11222
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
...+....+.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 88 ~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 88 VAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 334455566788889999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|++||++++|+||+++||||+|||++++++...
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 202 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALA--------------------------------------------- 202 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877754333
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
++++++++.||.+++.+|++++.....++.+.++.|...+...+. ++|++||+.+
T Consensus 203 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~~~a 257 (269)
T PRK06127 203 ----------------------DYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFD---SEDYREGRAA 257 (269)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence 238899999999999999999998888899999999998888776 9999999999
Q ss_pred hhccCCCCCCCCC
Q 015820 351 RMVDRDIAPKWSP 363 (399)
Q Consensus 351 fl~ek~r~p~~~~ 363 (399)
|+ +| |+|+|++
T Consensus 258 f~-ek-r~p~~~~ 268 (269)
T PRK06127 258 FM-EK-RKPVFKG 268 (269)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 98 8999975
No 25
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-52 Score=398.11 Aligned_cols=252 Identities=24% Similarity=0.317 Sum_probs=222.7
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
|++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... ....
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~~ 77 (254)
T PRK08252 1 MSDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGE---RPSI 77 (254)
T ss_pred CCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhccc---chhh
Confidence 4567899999999999999999999999999999999999999999999999999999999999999876321 1111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
. ...+..+. ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 78 ~---~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 78 P---GRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred h---HHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 1 11122222 2479999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|+++|++++|+||+++||||+|+|++++.+...
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 187 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAAL--------------------------------------------- 187 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHH---------------------------------------------
Confidence 99999999999999999999999999887653222
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+++++|++.||.+++.+|++++.....++.++++.|...+...+. ++|++||+.+
T Consensus 188 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~eg~~a 242 (254)
T PRK08252 188 ----------------------ELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFT---SADAKEGATA 242 (254)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHH
Confidence 348899999999999999999988888899999999988888876 9999999999
Q ss_pred hhccCCCCCCCCC
Q 015820 351 RMVDRDIAPKWSP 363 (399)
Q Consensus 351 fl~ek~r~p~~~~ 363 (399)
|+ +| |+|+|+.
T Consensus 243 f~-~k-r~p~~~~ 253 (254)
T PRK08252 243 FA-EK-RAPVWTG 253 (254)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 88 9999974
No 26
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.1e-52 Score=397.81 Aligned_cols=247 Identities=24% Similarity=0.351 Sum_probs=224.1
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 015820 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (399)
Q Consensus 41 ~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (399)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... .......+...+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~----~~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM----SPSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc----ChHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999984 899999999987531 122233455666
Q ss_pred HHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHHHHcCC
Q 015820 120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 198 (399)
Q Consensus 120 ~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l~ltG~ 198 (399)
+.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|++||+
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~ 157 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR 157 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 7788889999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHHHHHHH
Q 015820 199 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS 278 (399)
Q Consensus 199 ~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~ 278 (399)
+++|+||+++||||+++|++++.+...
T Consensus 158 ~~~a~eA~~~Glv~~vv~~~~~~~~a~----------------------------------------------------- 184 (251)
T PLN02600 158 RIGAREAASMGLVNYCVPAGEAYEKAL----------------------------------------------------- 184 (251)
T ss_pred ccCHHHHHHcCCCcEeeChhHHHHHHH-----------------------------------------------------
Confidence 999999999999999999887643222
Q ss_pred HHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhccCCCC
Q 015820 279 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIA 358 (399)
Q Consensus 279 l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~ek~r~ 358 (399)
+++++|++.||.+++.+|++++.....++.+.+..|...+..++. ++|++||+++|+ +| |+
T Consensus 185 --------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~-ek-r~ 245 (251)
T PLN02600 185 --------------ELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLK---TKDRLEGLAAFA-EK-RK 245 (251)
T ss_pred --------------HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHh-cC-CC
Confidence 348999999999999999999988888999999999999988887 999999999999 98 89
Q ss_pred CCCCC
Q 015820 359 PKWSP 363 (399)
Q Consensus 359 p~~~~ 363 (399)
|.|+.
T Consensus 246 p~~~~ 250 (251)
T PLN02600 246 PVYTG 250 (251)
T ss_pred CCCCC
Confidence 99975
No 27
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-52 Score=399.11 Aligned_cols=252 Identities=21% Similarity=0.225 Sum_probs=221.3
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 015820 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (399)
Q Consensus 36 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (399)
|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....... ...+
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~----~~~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG----GFPF 76 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc----hhhh
Confidence 457888999999999999999999999999999999999999999999999999999999999875421111 1111
Q ss_pred HHH-HHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHH
Q 015820 116 FRT-LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (399)
Q Consensus 116 ~~~-~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l 193 (399)
... ...+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 156 (255)
T PRK06563 77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY 156 (255)
T ss_pred hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence 111 12223357899999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHH
Q 015820 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273 (399)
Q Consensus 194 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 273 (399)
++||+.++|+||+++||||+|+|++++.+...
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 188 (255)
T PRK06563 157 LLTGDEFDAQEALRLGLVQEVVPPGEQLERAI------------------------------------------------ 188 (255)
T ss_pred HHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999877643222
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhc
Q 015820 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMV 353 (399)
Q Consensus 274 ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~ 353 (399)
+++++|++.||.+++.+|++++.....++.++++.|...+...+. ++|++||+++|+
T Consensus 189 -------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~- 245 (255)
T PRK06563 189 -------------------ELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFT---SEDAKEGVQAFL- 245 (255)
T ss_pred -------------------HHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh-
Confidence 248899999999999999999988888899999999988888876 899999999999
Q ss_pred cCCCCCCCCC
Q 015820 354 DRDIAPKWSP 363 (399)
Q Consensus 354 ek~r~p~~~~ 363 (399)
+| |+|.|.+
T Consensus 246 ~k-r~p~~~~ 254 (255)
T PRK06563 246 ER-RPARFKG 254 (255)
T ss_pred cC-CCCCCCC
Confidence 88 8999974
No 28
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-52 Score=397.54 Aligned_cols=256 Identities=23% Similarity=0.316 Sum_probs=230.9
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 015820 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (399)
Q Consensus 34 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (399)
..+.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ........
T Consensus 3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~-~~~~~~~~ 81 (260)
T PRK07511 3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENR-AKPPSVQA 81 (260)
T ss_pred CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcc-cccchhHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999875421 11123334
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHH
Q 015820 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (399)
Q Consensus 114 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~ 192 (399)
.+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 161 (260)
T PRK07511 82 ASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATE 161 (260)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHH
Confidence 4566678888999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCH
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 272 (399)
|++||++++|+||+++||||+||+++++.+...
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~----------------------------------------------- 194 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEAL----------------------------------------------- 194 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999877643222
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhh
Q 015820 273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM 352 (399)
Q Consensus 273 ~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl 352 (399)
++++++++.||.+++.+|+.++.....++.+++..|...+...+. ++|+++|+++|+
T Consensus 195 --------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~~f~ 251 (260)
T PRK07511 195 --------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLH---HADALEGIAAFL 251 (260)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh
Confidence 237889999999999999999998888999999999999988887 999999999999
Q ss_pred ccCCCCCCCC
Q 015820 353 VDRDIAPKWS 362 (399)
Q Consensus 353 ~ek~r~p~~~ 362 (399)
+| |+|.|+
T Consensus 252 -~~-r~~~~~ 259 (260)
T PRK07511 252 -EK-RAPDYK 259 (260)
T ss_pred -cc-CCCCCC
Confidence 88 899995
No 29
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-52 Score=398.59 Aligned_cols=258 Identities=24% Similarity=0.351 Sum_probs=225.4
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (399)
+..+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~ 81 (262)
T PRK05995 3 YETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYS-DDEN 81 (262)
T ss_pred CceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccC-chhh
Confidence 457889999999999999999999999999999999999999999999999999999999999999875321111 1111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HH
Q 015820 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (399)
Q Consensus 113 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~ 191 (399)
......++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++ |++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~ 160 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR 160 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence 12234566788889999999999999999999999999999999999999999999999999887754 88999998 99
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 271 (399)
+|+++|++++|+||+++||||+|+|++++.+...
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 194 (262)
T PRK05995 161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVD---------------------------------------------- 194 (262)
T ss_pred HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877653222
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHH-HHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~-l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+++++|++.||.+++.+|++++.....++.+. ++.|...+...+. ++|+++|+++
T Consensus 195 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~~~a 250 (262)
T PRK05995 195 ---------------------ELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRA---TEEAREGVAA 250 (262)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 34889999999999999999998877788888 7888887777776 8999999999
Q ss_pred hhccCCCCCCCCCC
Q 015820 351 RMVDRDIAPKWSPP 364 (399)
Q Consensus 351 fl~ek~r~p~~~~~ 364 (399)
|+ +| |+|.|+++
T Consensus 251 f~-~k-r~p~~~~~ 262 (262)
T PRK05995 251 FL-EK-RKPAWRGR 262 (262)
T ss_pred Hh-cC-CCCCCCCC
Confidence 99 88 99999753
No 30
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-52 Score=397.69 Aligned_cols=253 Identities=26% Similarity=0.384 Sum_probs=227.2
Q ss_pred CCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 33 ~~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
.+.+.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++... ..
T Consensus 6 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~--- 79 (261)
T PRK08138 6 TDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA---GA--- 79 (261)
T ss_pred CCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhcc---ch---
Confidence 34677887 688999999999999999999999999999999999999999999999999999999987531 11
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
...+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 159 (261)
T PRK08138 80 IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKA 159 (261)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHH
Confidence 112334456778889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|+++|+.++|+||+++||||+|+|++++.+...
T Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 194 (261)
T PRK08138 160 MRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRAL--------------------------------------------- 194 (261)
T ss_pred HHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653222
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+++++|++.||.+++.+|++++.....++.+++..|.+.+...+. ++|+++|+++
T Consensus 195 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~a 249 (261)
T PRK08138 195 ----------------------ELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFD---SEDQKEGMDA 249 (261)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 237889999999999999999988888899999999999888887 9999999999
Q ss_pred hhccCCCCCCCCC
Q 015820 351 RMVDRDIAPKWSP 363 (399)
Q Consensus 351 fl~ek~r~p~~~~ 363 (399)
|+ +| |+|.|++
T Consensus 250 f~-~k-r~~~~~~ 260 (261)
T PRK08138 250 FL-EK-RKPAYKG 260 (261)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 88 8999974
No 31
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-52 Score=398.82 Aligned_cols=260 Identities=20% Similarity=0.287 Sum_probs=229.6
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEecCCCCcccCCChhhHHHhhccC--C
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP-NIGFVSMKGSGRAFCAGGDIVSLYHFMNQG--K 108 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~-~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~--~ 108 (399)
+|+.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++++|||||.|++||+|+|++++....... .
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 3667899999999999999999999999999999999999999876 499999999999999999999875321100 0
Q ss_pred hHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchH
Q 015820 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (399)
Q Consensus 109 ~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~ 188 (399)
......+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~ 161 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK 161 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH
Confidence 01122334456778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhc
Q 015820 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 267 (399)
Q Consensus 189 ~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 267 (399)
. +++|++||++++|+||+++|||++++|++++.+...
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------------ 199 (266)
T PRK05981 162 ARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAM------------------------------------------ 199 (266)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHH------------------------------------------
Confidence 9 999999999999999999999999999877653222
Q ss_pred CCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhh
Q 015820 268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG 347 (399)
Q Consensus 268 ~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~eg 347 (399)
++++++++.||.+++.+|++++.....++.+.++.|...+...+. ++|++||
T Consensus 200 -------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~ 251 (266)
T PRK05981 200 -------------------------KLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGK---TEDFKEG 251 (266)
T ss_pred -------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhc---ChhHHHH
Confidence 348899999999999999999988888899999999998888776 9999999
Q ss_pred HhhhhccCCCCCCCCC
Q 015820 348 VRARMVDRDIAPKWSP 363 (399)
Q Consensus 348 v~afl~ek~r~p~~~~ 363 (399)
+.+|+ +| |+|.|+.
T Consensus 252 ~~af~-~k-r~~~~~~ 265 (266)
T PRK05981 252 VGAFL-QK-RPAQFKG 265 (266)
T ss_pred HHHHh-cC-CCCCCCC
Confidence 99999 88 8999974
No 32
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-52 Score=395.45 Aligned_cols=253 Identities=23% Similarity=0.314 Sum_probs=228.4
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 015820 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (399)
Q Consensus 34 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (399)
..+.++.+++|++||||||++.|++|.+|+.+|.++++.+ .|+++++|||+|.|++||+|+|++++.... ......
T Consensus 6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~---~~~~~~ 81 (260)
T PRK07659 6 ESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSN---DESKFD 81 (260)
T ss_pred ceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhcc---CchhHH
Confidence 5689999999999999999999999999999999999999 588999999999999999999999875321 122334
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHH
Q 015820 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (399)
Q Consensus 114 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~ 192 (399)
.+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~ 161 (260)
T PRK07659 82 GVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQ 161 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHH
Confidence 4566677888899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCH
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 272 (399)
|++||+.++|+||+++||||++| ++++.+...
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~----------------------------------------------- 193 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAK----------------------------------------------- 193 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHH-----------------------------------------------
Confidence 99999999999999999999999 666643222
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhh
Q 015820 273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM 352 (399)
Q Consensus 273 ~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl 352 (399)
+++++|++.||.+++.+|++++.....++.+.++.|...+...+. ++|++||+.+|+
T Consensus 194 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~af~ 250 (260)
T PRK07659 194 --------------------QKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQ---TADHKEGIRAFL 250 (260)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHhHHHHHHHHh
Confidence 348899999999999999999988888899999999999888887 999999999999
Q ss_pred ccCCCCCCCCC
Q 015820 353 VDRDIAPKWSP 363 (399)
Q Consensus 353 ~ek~r~p~~~~ 363 (399)
+| |+|+|+.
T Consensus 251 -~k-r~p~~~~ 259 (260)
T PRK07659 251 -EK-RLPVFKG 259 (260)
T ss_pred -cC-CCCCCCC
Confidence 88 8999975
No 33
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-52 Score=394.47 Aligned_cols=253 Identities=25% Similarity=0.350 Sum_probs=220.4
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (399)
+++.+.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ...
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~--~~~ 79 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGK--RGW 79 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCc--chh
Confidence 346788999999999999999999999999999999999999999999999999998 79999999998753211 111
Q ss_pred HHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-
Q 015820 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (399)
Q Consensus 111 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~- 189 (399)
. .. .+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 80 ~-~~---~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 80 P-ES---GFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred h-hH---HHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 1 11 11222 234589999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
+++|++||+.++|+||+++||||+++|++++.+...
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------- 190 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAE-------------------------------------------- 190 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877653222
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHhhccCCCCcHHhh
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE--YRMSLQGVSRLISGDFYEG 347 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e--~~~~~~~~~~~~s~d~~eg 347 (399)
+++++|++.||.+++.+|++++.....+++++++.| ...+...+. ++|++||
T Consensus 191 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~d~~eg 244 (259)
T PRK06494 191 -----------------------RWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRA---SQDYIEG 244 (259)
T ss_pred -----------------------HHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---CccHHHH
Confidence 348899999999999999999988888899999998 445666665 9999999
Q ss_pred HhhhhccCCCCCCCCC
Q 015820 348 VRARMVDRDIAPKWSP 363 (399)
Q Consensus 348 v~afl~ek~r~p~~~~ 363 (399)
+++|+ +| |+|+|+.
T Consensus 245 ~~af~-~k-r~p~~~~ 258 (259)
T PRK06494 245 PKAFA-EK-RPPRWKG 258 (259)
T ss_pred HHHHH-cc-CCCCCCC
Confidence 99999 88 8999974
No 34
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=1.1e-51 Score=395.91 Aligned_cols=254 Identities=22% Similarity=0.313 Sum_probs=221.0
Q ss_pred cCCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 015820 31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (399)
Q Consensus 31 ~~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (399)
..|..+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++..........
T Consensus 5 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 84 (275)
T PRK09120 5 NRWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEI 84 (275)
T ss_pred cccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhH
Confidence 34778999999999999999999999999999999999999999999999999999999999999999875321111111
Q ss_pred HHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-
Q 015820 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (399)
Q Consensus 111 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~- 189 (399)
.........+.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 164 (275)
T PRK09120 85 LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD 164 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence 1222334456678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
+++|++||+.++|+||+++|||++|||++++++...
T Consensus 165 a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 200 (275)
T PRK09120 165 ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTR-------------------------------------------- 200 (275)
T ss_pred HHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887754333
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHH--HHHhhccCCCC-cHHh
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRM--SLQGVSRLISG-DFYE 346 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~--~~~~~~~~~s~-d~~e 346 (399)
+++++|++.||.+++.+|++++.....++.+.++.|... +...+. ++ |++|
T Consensus 201 -----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~d~~e 254 (275)
T PRK09120 201 -----------------------ELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLD---PEGGREE 254 (275)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC---CHHHHHH
Confidence 348999999999999999999998888899998887654 333344 77 8999
Q ss_pred hHhhhhccC
Q 015820 347 GVRARMVDR 355 (399)
Q Consensus 347 gv~afl~ek 355 (399)
|+++|+ +|
T Consensus 255 g~~afl-~k 262 (275)
T PRK09120 255 GLKQFL-DD 262 (275)
T ss_pred HHHHHH-hc
Confidence 999999 66
No 35
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-51 Score=393.16 Aligned_cols=257 Identities=21% Similarity=0.297 Sum_probs=223.3
Q ss_pred CCcEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 33 ~~~v~~~~~-~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
++.+.++++ ++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... ....
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~~ 81 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTA-DRAT 81 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhccc-chhh
Confidence 456888885 68999999999999999999999999999999999999999999999999999999987532111 1111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
.......+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a 160 (262)
T PRK07468 82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHH
Confidence 12233445678888999999999999999999999999999999999999999999999999999999855 458998 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|++||++++|+||+++||||+|+|++++++...
T Consensus 161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~--------------------------------------------- 195 (262)
T PRK07468 161 RRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVE--------------------------------------------- 195 (262)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999876643222
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+++++|++.+|.+++.+|++++......+++.++.|...+...+. ++|++||+++
T Consensus 196 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~~~a 250 (262)
T PRK07468 196 ----------------------AEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWE---TEEAREGIAA 250 (262)
T ss_pred ----------------------HHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 248899999999999999999987666788999999888888877 9999999999
Q ss_pred hhccCCCCCCCCC
Q 015820 351 RMVDRDIAPKWSP 363 (399)
Q Consensus 351 fl~ek~r~p~~~~ 363 (399)
|+ +| |+|+|..
T Consensus 251 f~-~k-r~~~~~~ 261 (262)
T PRK07468 251 FF-DK-RAPAWRG 261 (262)
T ss_pred HH-cC-CCCCCCC
Confidence 99 98 8999963
No 36
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.3e-52 Score=394.73 Aligned_cols=257 Identities=22% Similarity=0.285 Sum_probs=220.4
Q ss_pred CCcEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 33 ~~~v~~~~~-~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
|+.+.++.+ ++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... ......
T Consensus 4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 82 (265)
T PRK05674 4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSA-DLDYNT 82 (265)
T ss_pred cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcc-cccchh
Confidence 667889885 789999999999999999999999999999999999999999999999999999999875321 101111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
.......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ ++++++|.. +
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a 161 (265)
T PRK05674 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA 161 (265)
T ss_pred hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence 11122345677888999999999999999999999999999999999999999999999999988766 488999998 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|++||+.++|+||+++|||++|+|++++.+...
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 196 (265)
T PRK05674 162 RRYALTAERFDGRRARELGLLAESYPAAELEAQVE--------------------------------------------- 196 (265)
T ss_pred HHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653222
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHhhccCCCCcHHhhHh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE-YRMSLQGVSRLISGDFYEGVR 349 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e-~~~~~~~~~~~~s~d~~egv~ 349 (399)
+++++|+++||.+++.+|++++.....++.+++..+ ...+...+. ++|++||++
T Consensus 197 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~e~~~ 251 (265)
T PRK05674 197 ----------------------AWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRV---SAEGQEGLR 251 (265)
T ss_pred ----------------------HHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence 238899999999999999999998888888887653 345555555 899999999
Q ss_pred hhhccCCCCCCCCC
Q 015820 350 ARMVDRDIAPKWSP 363 (399)
Q Consensus 350 afl~ek~r~p~~~~ 363 (399)
+|+ +| |+|.|+.
T Consensus 252 af~-~k-r~p~~~~ 263 (265)
T PRK05674 252 AFL-EK-RTPAWQT 263 (265)
T ss_pred HHH-cc-CCCCCCC
Confidence 999 88 8999973
No 37
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-51 Score=393.19 Aligned_cols=255 Identities=27% Similarity=0.393 Sum_probs=230.8
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
+...+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... .. .
T Consensus 3 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~--~~-~- 78 (259)
T PRK06688 3 MVTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAP--PK-P- 78 (259)
T ss_pred CCCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccC--cc-h-
Confidence 3457889999999999999999999999999999999999999999999999999999999999999876421 11 1
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
..+...+++++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 157 (259)
T PRK06688 79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARA 157 (259)
T ss_pred -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHH
Confidence 23455667888899999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|+++|++++|+||+++||||++++++++.+...
T Consensus 158 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~--------------------------------------------- 192 (259)
T PRK06688 158 AEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEAD--------------------------------------------- 192 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999876643222
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+++++|++.||.+++.+|++++.....++++++..|.+.+...+. ++|+++|+++
T Consensus 193 ----------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~a 247 (259)
T PRK06688 193 ----------------------AQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLR---TPDFREGATA 247 (259)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 348899999999999999999998888999999999999988887 8999999999
Q ss_pred hhccCCCCCCCCC
Q 015820 351 RMVDRDIAPKWSP 363 (399)
Q Consensus 351 fl~ek~r~p~~~~ 363 (399)
|+ +| ++|+|+.
T Consensus 248 f~-~~-~~p~~~~ 258 (259)
T PRK06688 248 FI-EK-RKPDFTG 258 (259)
T ss_pred HH-cC-CCCCCCC
Confidence 99 88 8999964
No 38
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-51 Score=395.08 Aligned_cols=263 Identities=21% Similarity=0.290 Sum_probs=224.0
Q ss_pred ccCCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccC-
Q 015820 30 DDLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG- 107 (399)
Q Consensus 30 ~~~~~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~- 107 (399)
...++.+.++. +++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.......
T Consensus 5 ~~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~ 84 (276)
T PRK05864 5 RSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEG 84 (276)
T ss_pred CCCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccccc
Confidence 44566788887 7899999999999999999999999999999999999999999999999999999999874211000
Q ss_pred --ChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccC-CCchhHHHhh
Q 015820 108 --KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSH 184 (399)
Q Consensus 108 --~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p-~~g~~~~L~r 184 (399)
...........++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~ 164 (276)
T PRK05864 85 LTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPR 164 (276)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHh
Confidence 1111122344556778888999999999999999999999999999999999999999999999997 7889999999
Q ss_pred cchHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHH
Q 015820 185 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV 263 (399)
Q Consensus 185 ~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (399)
++|.. +++|+++|++++|+||+++|||++|++++++.+...
T Consensus 165 ~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------- 206 (276)
T PRK05864 165 AIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCY-------------------------------------- 206 (276)
T ss_pred hhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHH--------------------------------------
Confidence 99999 999999999999999999999999999877653222
Q ss_pred HhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccC-CHHHHHHHHHHHHH-HhhccCCC
Q 015820 264 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMSL-QGVSRLIS 341 (399)
Q Consensus 264 ~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~-~~~~~l~~e~~~~~-~~~~~~~s 341 (399)
+++++|+..||.+++.+|++++..... ++++.+..|..... ..+. +
T Consensus 207 -----------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~ 254 (276)
T PRK05864 207 -----------------------------AIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLL---T 254 (276)
T ss_pred -----------------------------HHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc---C
Confidence 248999999999999999999987665 78888887765322 2344 8
Q ss_pred CcHHhhHhhhhccCCCCCCCCCC
Q 015820 342 GDFYEGVRARMVDRDIAPKWSPP 364 (399)
Q Consensus 342 ~d~~egv~afl~ek~r~p~~~~~ 364 (399)
+|++||+++|+ +| |+|.|++.
T Consensus 255 ~d~~e~~~af~-~k-r~p~~~~~ 275 (276)
T PRK05864 255 ANFEEAVAARA-EK-RPPVFTDD 275 (276)
T ss_pred hhHHHHHHHHh-cc-CCCCCCCC
Confidence 99999999999 88 89999753
No 39
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.2e-51 Score=392.55 Aligned_cols=254 Identities=18% Similarity=0.236 Sum_probs=217.2
Q ss_pred CcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 015820 34 NQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 34 ~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
+.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... .....
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY-IDDSG 80 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccc-cchhh
Confidence 4577888 899999999999999999999999999999999999999999999999 79999999997642110 01111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
.. ...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 81 ~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a 158 (259)
T TIGR01929 81 VH--RLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA 158 (259)
T ss_pred HH--HHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence 11 11234677788999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|+++|++++|+||+++||||+|||++++.+...
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 193 (259)
T TIGR01929 159 REIWFLCRQYDAEQALDMGLVNTVVPLADLEKETV--------------------------------------------- 193 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653222
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+++++|++.||.+++.+|++++..... ....+..|...+...+. ++|++||+++
T Consensus 194 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~---~~d~~egi~a 247 (259)
T TIGR01929 194 ----------------------RWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFYM---TEEGQEGRNA 247 (259)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhc---CccHHHHHHH
Confidence 348999999999999999999976543 34455556666666665 9999999999
Q ss_pred hhccCCCCCCCCC
Q 015820 351 RMVDRDIAPKWSP 363 (399)
Q Consensus 351 fl~ek~r~p~~~~ 363 (399)
|+ +| |+|+|+.
T Consensus 248 f~-~k-r~p~~~~ 258 (259)
T TIGR01929 248 FL-EK-RQPDFSK 258 (259)
T ss_pred Hh-cc-CCCCCCC
Confidence 99 88 9999963
No 40
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-51 Score=395.26 Aligned_cols=259 Identities=27% Similarity=0.363 Sum_probs=226.0
Q ss_pred CCcEEEEeeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh--
Q 015820 33 CNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL-- 109 (399)
Q Consensus 33 ~~~v~~~~~~-~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-- 109 (399)
++.+.+++++ +|++||||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.........
T Consensus 4 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06210 4 YDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRD 83 (272)
T ss_pred cceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccccc
Confidence 4678899988 9999999999999999999999999999999999999999999999999999999987542110000
Q ss_pred HHHHHH----HHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhc
Q 015820 110 EECKDF----FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185 (399)
Q Consensus 110 ~~~~~~----~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 185 (399)
.....+ ...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 163 (272)
T PRK06210 84 TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRL 163 (272)
T ss_pred ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhh
Confidence 000011 1123556778899999999999999999999999999999999999999999999999999999999999
Q ss_pred chHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHH
Q 015820 186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD 264 (399)
Q Consensus 186 ~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (399)
+|.. +++|++||+.++|+||+++||||+++|++++.+...
T Consensus 164 ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------- 204 (272)
T PRK06210 164 VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTL--------------------------------------- 204 (272)
T ss_pred hCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------
Confidence 9999 999999999999999999999999999876643222
Q ss_pred hhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhc-CchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCc
Q 015820 265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD 343 (399)
Q Consensus 265 ~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~-~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d 343 (399)
+++++|++. +|.++..+|++++.....++.++++.|...+...+. ++|
T Consensus 205 ----------------------------~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~ 253 (272)
T PRK06210 205 ----------------------------AYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQ---RPD 253 (272)
T ss_pred ----------------------------HHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhc---Ccc
Confidence 248899985 999999999999998888999999999998888776 999
Q ss_pred HHhhHhhhhccCCCCCCCCC
Q 015820 344 FYEGVRARMVDRDIAPKWSP 363 (399)
Q Consensus 344 ~~egv~afl~ek~r~p~~~~ 363 (399)
++||+++|+ +| |+|.|..
T Consensus 254 ~~egi~af~-~k-r~p~~~~ 271 (272)
T PRK06210 254 FIEGVASFL-EK-RPPRFPG 271 (272)
T ss_pred HHHHHHHHh-cc-CCCCCCC
Confidence 999999999 88 8999963
No 41
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=1.4e-51 Score=391.44 Aligned_cols=252 Identities=19% Similarity=0.225 Sum_probs=214.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
|+.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... ...
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~---~~~-- 75 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG---YDG-- 75 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc---ccc--
Confidence 45688999999999999999999999999999999999999999999999999999 799999999987421 110
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|.. |
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A 155 (256)
T TIGR03210 76 RGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA 155 (256)
T ss_pred hhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence 111223456678889999999999999999999999999999999999999999999999998888899999999999 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|++||+.++|+||+++||||+|+|++++.+...
T Consensus 156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 190 (256)
T TIGR03210 156 REIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQ--------------------------------------------- 190 (256)
T ss_pred HHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877654322
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHhhccCCCCcHHhhHh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTF-DECLVREYRMSLQGVSRLISGDFYEGVR 349 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~-~~~l~~e~~~~~~~~~~~~s~d~~egv~ 349 (399)
+++++|++.||.+++.+|++++....... .+. .|...+...+. ++|++||++
T Consensus 191 ----------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~--~~~~~~~~~~~---~~d~~e~~~ 243 (256)
T TIGR03210 191 ----------------------KWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAG--MGMYALKLYYD---TAESREGVK 243 (256)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHcc---ChhHHHHHH
Confidence 34899999999999999999987654321 111 23344455555 899999999
Q ss_pred hhhccCCCCCCCCC
Q 015820 350 ARMVDRDIAPKWSP 363 (399)
Q Consensus 350 afl~ek~r~p~~~~ 363 (399)
+|+ +| |+|.|.+
T Consensus 244 af~-~k-r~p~~~~ 255 (256)
T TIGR03210 244 AFQ-EK-RKPEFRK 255 (256)
T ss_pred HHh-cc-CCCCCCC
Confidence 999 88 8999974
No 42
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-51 Score=390.80 Aligned_cols=254 Identities=22% Similarity=0.335 Sum_probs=225.8
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
||+.+.++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... .....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~--~~~~~ 78 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVI--KGPGD 78 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhcc--CCchh
Confidence 5678999999999999999998 69999999999999999999999999999999999999999999875421 11122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
...+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 23344556778888999999999999999999999999999999999999999999999996 4567899999998 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|+++|+.++|+||+++||||+++|++++.+...
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~--------------------------------------------- 190 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAM--------------------------------------------- 190 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653322
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+++++|++.||.+++.+|++++.....++.++++.|...+...+. ++|++||+++
T Consensus 191 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~egi~a 245 (257)
T PRK06495 191 ----------------------EIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAK---TEDAKEAQRA 245 (257)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence 348999999999999999999988888899999999998888776 9999999999
Q ss_pred hhccCCCCCCCCC
Q 015820 351 RMVDRDIAPKWSP 363 (399)
Q Consensus 351 fl~ek~r~p~~~~ 363 (399)
|+ +| |+|.|+.
T Consensus 246 f~-~k-r~p~~~~ 256 (257)
T PRK06495 246 FL-EK-RPPVFKG 256 (257)
T ss_pred Hh-cc-CCCCCCC
Confidence 99 88 9999974
No 43
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-51 Score=392.38 Aligned_cols=255 Identities=22% Similarity=0.324 Sum_probs=219.9
Q ss_pred cCCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh
Q 015820 31 DLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL 109 (399)
Q Consensus 31 ~~~~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 109 (399)
..++.|.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.... ...
T Consensus 8 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~ 85 (268)
T PRK07327 8 ADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMA--DDF 85 (268)
T ss_pred CCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhcc--CcH
Confidence 4567889988 5789999999999999999999999999999999999999999999999999999999875421 112
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH
Q 015820 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189 (399)
Q Consensus 110 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~ 189 (399)
.....++.....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 165 (268)
T PRK07327 86 EVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMA 165 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHH
Confidence 22334455566788889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcC
Q 015820 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 268 (399)
Q Consensus 190 -a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 268 (399)
+++|++||++++|+||+++|||++++|++++.+...
T Consensus 166 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 202 (268)
T PRK07327 166 KAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKAL------------------------------------------- 202 (268)
T ss_pred HHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH-------------------------------------------
Confidence 999999999999999999999999999877753322
Q ss_pred CCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHhhccCCCCcHH
Q 015820 269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF---QTFDECLVREYRMSLQGVSRLISGDFY 345 (399)
Q Consensus 269 ~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~---~~~~~~l~~e~~~~~~~~~~~~s~d~~ 345 (399)
+++++|++.||.+++.+|++++.... ..++..+..|. ..+. ++|++
T Consensus 203 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~---~~d~~ 251 (268)
T PRK07327 203 ------------------------EVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFS---GPDVR 251 (268)
T ss_pred ------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHcc---ChhHH
Confidence 34899999999999999999986532 24555555443 2334 89999
Q ss_pred hhHhhhhccCCCCCCCCC
Q 015820 346 EGVRARMVDRDIAPKWSP 363 (399)
Q Consensus 346 egv~afl~ek~r~p~~~~ 363 (399)
||+.+|+ +| |+|.|++
T Consensus 252 eg~~af~-ek-r~p~~~~ 267 (268)
T PRK07327 252 EGLASLR-EK-RAPDFPG 267 (268)
T ss_pred HHHHHHH-hc-CCCCCCC
Confidence 9999999 88 9999974
No 44
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.9e-51 Score=391.66 Aligned_cols=254 Identities=21% Similarity=0.316 Sum_probs=222.0
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (399)
|++.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++.... ....
T Consensus 1 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~--~~~~ 77 (261)
T PRK03580 1 MSESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE--APDA 77 (261)
T ss_pred CCceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC--cchh
Confidence 3456899999999999999995 6999999999999999999999999999999999 7999999999875321 1111
Q ss_pred HHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-
Q 015820 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (399)
Q Consensus 111 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~- 189 (399)
.+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 78 ---~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~ 154 (261)
T PRK03580 78 ---DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAI 154 (261)
T ss_pred ---hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHH
Confidence 1112223456778899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
+++++++|+.++|+||+++|||++|+|++++.+...
T Consensus 155 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 190 (261)
T PRK03580 155 ANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRAR-------------------------------------------- 190 (261)
T ss_pred HHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887754333
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHH----HHHHhhccCCCCcHH
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR----MSLQGVSRLISGDFY 345 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~----~~~~~~~~~~s~d~~ 345 (399)
+++++|++.||.+++.+|++++.....+++++++.|.. .+..++. ++|++
T Consensus 191 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~d~~ 244 (261)
T PRK03580 191 -----------------------ELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLH---SEDAL 244 (261)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhc---CccHH
Confidence 23889999999999999999998888889999998864 4555565 99999
Q ss_pred hhHhhhhccCCCCCCCCC
Q 015820 346 EGVRARMVDRDIAPKWSP 363 (399)
Q Consensus 346 egv~afl~ek~r~p~~~~ 363 (399)
||+++|+ +| |+|.|+.
T Consensus 245 e~~~af~-ek-r~~~~~~ 260 (261)
T PRK03580 245 EGPRAFA-EK-RDPVWKG 260 (261)
T ss_pred HHHHHHh-cC-CCCCCCC
Confidence 9999999 88 8999974
No 45
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-51 Score=391.00 Aligned_cols=256 Identities=25% Similarity=0.265 Sum_probs=225.2
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
|++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ......
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 79 (262)
T PRK07509 1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSP-GNAVKL 79 (262)
T ss_pred CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhccc-chhhhh
Confidence 5788999999999999999999999999999999999999999999999999999999999999999875421 111111
Q ss_pred HH----HHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcch
Q 015820 112 CK----DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (399)
Q Consensus 112 ~~----~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g 187 (399)
.. .....+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 11 11223455677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhh
Q 015820 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC 266 (399)
Q Consensus 188 ~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (399)
.. +++|++||++++|+||+++||||+++++ +.+..
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~a------------------------------------------ 195 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSDD--PLAAA------------------------------------------ 195 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHHH------------------------------------------
Confidence 99 9999999999999999999999999953 32111
Q ss_pred cCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHh
Q 015820 267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 346 (399)
Q Consensus 267 f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~e 346 (399)
.+++++|++.||.+++.+|++++.....++++++..|.+.+...+. ++|++|
T Consensus 196 -------------------------~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e 247 (262)
T PRK07509 196 -------------------------LALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLL---GKNQKI 247 (262)
T ss_pred -------------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHH
Confidence 2348999999999999999999998888899999999998888776 999999
Q ss_pred hHhhhhccCCCCCCCC
Q 015820 347 GVRARMVDRDIAPKWS 362 (399)
Q Consensus 347 gv~afl~ek~r~p~~~ 362 (399)
|+.+|+ +| |+|.|.
T Consensus 248 ~~~af~-ek-r~p~~~ 261 (262)
T PRK07509 248 AVKAQM-KK-RAPKFL 261 (262)
T ss_pred HHHHHh-cC-CCCCCC
Confidence 999999 88 899996
No 46
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-51 Score=390.90 Aligned_cols=253 Identities=26% Similarity=0.374 Sum_probs=220.3
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (399)
+...+.++.+++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++.... ...
T Consensus 6 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~---~~~ 82 (262)
T PRK06144 6 STDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS---TAE 82 (262)
T ss_pred CCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc---chh
Confidence 455789999999999999999999999999999999999999999999999999998 7999999999875321 112
Q ss_pred HHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccc-cCccCCCchhHHHhhcchHH
Q 015820 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL-IGFHPDAGASFYLSHLPGHL 189 (399)
Q Consensus 111 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~-~Gl~p~~g~~~~L~r~~g~~ 189 (399)
....+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||++ +|++|++|++++|++++|..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~ 162 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAA 162 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHH
Confidence 22234455677888899999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred -HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcC
Q 015820 190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 268 (399)
Q Consensus 190 -a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 268 (399)
+++++++|++++|+||+++||||+|+|++++.+...
T Consensus 163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 199 (262)
T PRK06144 163 RVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARAD------------------------------------------- 199 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHH-------------------------------------------
Confidence 999999999999999999999999999877653222
Q ss_pred CCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhH
Q 015820 269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGV 348 (399)
Q Consensus 269 ~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv 348 (399)
+++++|++.||.+++.+|++++......+. .+.+.+...+. ++|++||+
T Consensus 200 ------------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~----~~~~~~~~~~~---~~~~~e~~ 248 (262)
T PRK06144 200 ------------------------ALAELLAAHAPLTLRATKEALRRLRREGLP----DGDDLIRMCYM---SEDFREGV 248 (262)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCHH----HHHHHHHHHhc---ChHHHHHH
Confidence 348999999999999999999876554443 34455555565 89999999
Q ss_pred hhhhccCCCCCCCCC
Q 015820 349 RARMVDRDIAPKWSP 363 (399)
Q Consensus 349 ~afl~ek~r~p~~~~ 363 (399)
++|+ +| |+|.|.+
T Consensus 249 ~af~-~k-r~p~~~~ 261 (262)
T PRK06144 249 EAFL-EK-RPPKWKG 261 (262)
T ss_pred HHHh-cC-CCCCCCC
Confidence 9999 88 9999974
No 47
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-51 Score=389.86 Aligned_cols=251 Identities=25% Similarity=0.390 Sum_probs=224.5
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 015820 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (399)
Q Consensus 34 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (399)
+++.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.............
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK07260 2 EHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLV 81 (255)
T ss_pred CceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHH
Confidence 46888899999999999999999999999999999999999999999999999999999999999876422111222222
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHH
Q 015820 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (399)
Q Consensus 114 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~ 192 (399)
.+...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 161 (255)
T PRK07260 82 KIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATH 161 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHH
Confidence 3445567788899999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCH
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 272 (399)
|+++|++++|+||+++|||+++++++++.+...
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 194 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCE----------------------------------------------- 194 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999877653322
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhh
Q 015820 273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM 352 (399)
Q Consensus 273 ~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl 352 (399)
++++++++.+|.+++.+|+.++.....++++++..|...+...+. ++|++||+++|+
T Consensus 195 --------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~ 251 (255)
T PRK07260 195 --------------------QLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAF---KEDFKEGVRAFS 251 (255)
T ss_pred --------------------HHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 348999999999999999999998888899999999988888776 999999999999
Q ss_pred ccC
Q 015820 353 VDR 355 (399)
Q Consensus 353 ~ek 355 (399)
+|
T Consensus 252 -~k 253 (255)
T PRK07260 252 -ER 253 (255)
T ss_pred -hc
Confidence 77
No 48
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-51 Score=388.73 Aligned_cols=246 Identities=22% Similarity=0.315 Sum_probs=220.6
Q ss_pred CcEEEE-eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 015820 34 NQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 34 ~~v~~~-~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
.++.++ .+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... +...
T Consensus 6 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~~ 81 (256)
T PRK06143 6 AHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL----DQAS 81 (256)
T ss_pred ccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc----Chhh
Confidence 456677 4688999999999999999999999999999999999999999999999 799999999987532 1222
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
...+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a 160 (256)
T PRK06143 82 AEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWART 160 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHH
Confidence 3345566677888999999999999999999999999999999999999999999999998 8888899999999999 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|+++|+.++|+||+++||||+|||++++.+...
T Consensus 161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 195 (256)
T PRK06143 161 RWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVE--------------------------------------------- 195 (256)
T ss_pred HHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877654322
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+++++|+..||.+++.+|++++.....++++++..|...+...+. ++|++||+++
T Consensus 196 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~e~~~a 250 (256)
T PRK06143 196 ----------------------RLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFL---TGEPQRHMAA 250 (256)
T ss_pred ----------------------HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence 348999999999999999999998888899999999998888776 8999999999
Q ss_pred hhccC
Q 015820 351 RMVDR 355 (399)
Q Consensus 351 fl~ek 355 (399)
|+ +|
T Consensus 251 f~-ek 254 (256)
T PRK06143 251 FL-NR 254 (256)
T ss_pred HH-hh
Confidence 99 77
No 49
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-51 Score=394.69 Aligned_cols=259 Identities=22% Similarity=0.280 Sum_probs=220.4
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhc-c-----
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-Q----- 106 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~-~----- 106 (399)
++.|.++++++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++..... .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 4568899999999999999999999999999999999999999999999999999999999999998752100 0
Q ss_pred -------CChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchh
Q 015820 107 -------GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS 179 (399)
Q Consensus 107 -------~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~ 179 (399)
........+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~ 162 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS 162 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence 0011112233345567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhh
Q 015820 180 FYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIH 258 (399)
Q Consensus 180 ~~L~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (399)
++|++++|.. +++|++||++++|+||+++|||++||+++++.....
T Consensus 163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------- 209 (296)
T PRK08260 163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAAR--------------------------------- 209 (296)
T ss_pred hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHH---------------------------------
Confidence 9999999999 999999999999999999999999999876643222
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhc-CchHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHh
Q 015820 259 RIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRF--QTFDECLVREYRMSLQG 335 (399)
Q Consensus 259 ~~~~i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~-~p~a~~~~k~~l~~~~~--~~~~~~l~~e~~~~~~~ 335 (399)
+++++|+++ +|.+++.+|++++.... .... ....|...+...
T Consensus 210 ----------------------------------~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~ 254 (296)
T PRK08260 210 ----------------------------------ALAREIADNTSPVSVALTRQMMWRMAGADHPME-AHRVDSRAIYSR 254 (296)
T ss_pred ----------------------------------HHHHHHHhcCChHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHH
Confidence 248899985 99999999999998642 2333 335576666666
Q ss_pred hccCCCCcHHhhHhhhhccCCCCCCCCCC
Q 015820 336 VSRLISGDFYEGVRARMVDRDIAPKWSPP 364 (399)
Q Consensus 336 ~~~~~s~d~~egv~afl~ek~r~p~~~~~ 364 (399)
+. ++|++||+++|+ +| |+|.|+++
T Consensus 255 ~~---~~d~~egi~af~-~k-r~p~f~~~ 278 (296)
T PRK08260 255 GR---SGDGKEGVSSFL-EK-RPAVFPGK 278 (296)
T ss_pred cc---ChhHHHHHHHHh-cC-CCCCCCCC
Confidence 65 999999999999 88 99999875
No 50
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-50 Score=383.27 Aligned_cols=247 Identities=25% Similarity=0.350 Sum_probs=219.7
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 015820 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (399)
Q Consensus 36 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (399)
|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++... ....+
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~-------~~~~~ 74 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD-------FAIDL 74 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh-------hHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999987531 11223
Q ss_pred HHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHH
Q 015820 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL 195 (399)
Q Consensus 116 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~l 195 (399)
...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll 154 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV 154 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence 34456678889999999999999999999999999999999999999999999999999999999999999966999999
Q ss_pred cCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHHHH
Q 015820 196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275 (399)
Q Consensus 196 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 275 (399)
||++++|+||+++||||++ +++.+ +
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~--~-------------------------------------------------- 179 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLS--D-------------------------------------------------- 179 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHH--H--------------------------------------------------
Confidence 9999999999999999953 23321 1
Q ss_pred HHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhccC
Q 015820 276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDR 355 (399)
Q Consensus 276 ~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~ek 355 (399)
+.+++++|++.||.+++.+|++++.....++++.++.|...+..++. ++|++||+++|+ +|
T Consensus 180 ---------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~-~k 240 (248)
T PRK06072 180 ---------------AEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGK---TEDFKEGISSFK-EK 240 (248)
T ss_pred ---------------HHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhC---ChhHHHHHHHHh-cC
Confidence 12348999999999999999999988788899999999998888876 999999999999 88
Q ss_pred CCCCCCCCC
Q 015820 356 DIAPKWSPP 364 (399)
Q Consensus 356 ~r~p~~~~~ 364 (399)
|+|.|+++
T Consensus 241 -r~p~~~~~ 248 (248)
T PRK06072 241 -REPKFKGI 248 (248)
T ss_pred -CCCCCCCC
Confidence 99999753
No 51
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=9.9e-51 Score=388.91 Aligned_cols=257 Identities=18% Similarity=0.237 Sum_probs=219.8
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE 110 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (399)
.+..+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.... .....
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~~~~ 89 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGG-YVDDD 89 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccc-ccchh
Confidence 356788999999999999999999999999999999999999999999999999999 6999999999864211 00111
Q ss_pred HHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-
Q 015820 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (399)
Q Consensus 111 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~- 189 (399)
....+ ....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~ 167 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK 167 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence 11111 134567788899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
+++|++||+.++|+||+++||||+|||++++.+...
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------- 203 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETV-------------------------------------------- 203 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877653222
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHh
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR 349 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~ 349 (399)
+++++|++.||.+++.+|++++.... .+....+.|...+...+. ++|++|||.
T Consensus 204 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~---~~d~~egi~ 256 (273)
T PRK07396 204 -----------------------RWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYM---TEEAQEGRN 256 (273)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhc---ChhHHHHHH
Confidence 34899999999999999999987644 355555567666666665 899999999
Q ss_pred hhhccCCCCCCCCCC
Q 015820 350 ARMVDRDIAPKWSPP 364 (399)
Q Consensus 350 afl~ek~r~p~~~~~ 364 (399)
+|+ +| |+|+|...
T Consensus 257 af~-~k-r~p~~~~~ 269 (273)
T PRK07396 257 AFN-EK-RQPDFSKF 269 (273)
T ss_pred HHh-CC-CCCCCCCC
Confidence 999 88 99999853
No 52
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.1e-50 Score=386.30 Aligned_cols=253 Identities=18% Similarity=0.234 Sum_probs=222.2
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-C-CCcccCCChhhHHHhhccCChH
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-G-RAFCAGGDIVSLYHFMNQGKLE 110 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~-g-~~F~aG~Dl~~~~~~~~~~~~~ 110 (399)
++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+ +++|||||. | ++||+|+|++++.... .+
T Consensus 3 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~--~~-- 77 (261)
T PRK11423 3 MQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG--RD-- 77 (261)
T ss_pred ccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc--cc--
Confidence 457889999999999999999999999999999999999999887 999999996 3 7999999999875321 11
Q ss_pred HHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-
Q 015820 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (399)
Q Consensus 111 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~- 189 (399)
...+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~ 156 (261)
T PRK11423 78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI 156 (261)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence 123344566788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
+++|+++|++++|+||+++||||+|||++++++...
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------- 192 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTL-------------------------------------------- 192 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877653322
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhccc-CCH-HHHHHHHHHHHHHhhccCCCCcHHhh
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTF-DECLVREYRMSLQGVSRLISGDFYEG 347 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~-~~~l~~e~~~~~~~~~~~~s~d~~eg 347 (399)
+++++|++.||.+++.+|++++.... ..+ ...++.|...+...+. ++|++||
T Consensus 193 -----------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~eg 246 (261)
T PRK11423 193 -----------------------QMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYD---SEDYQEG 246 (261)
T ss_pred -----------------------HHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhC---ChhHHHH
Confidence 34899999999999999999986543 334 5778888888777776 9999999
Q ss_pred HhhhhccCCCCCCCCC
Q 015820 348 VRARMVDRDIAPKWSP 363 (399)
Q Consensus 348 v~afl~ek~r~p~~~~ 363 (399)
+.+|+ +| |+|+|+.
T Consensus 247 ~~af~-~k-r~p~~~~ 260 (261)
T PRK11423 247 MNAFL-EK-RKPVFVG 260 (261)
T ss_pred HHHHh-cc-CCCCCCC
Confidence 99999 98 9999974
No 53
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-51 Score=385.72 Aligned_cols=250 Identities=24% Similarity=0.241 Sum_probs=216.1
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
|++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... . ..
T Consensus 1 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~--~--~~ 76 (254)
T PRK08259 1 MSMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGR--G--NR 76 (254)
T ss_pred CCceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhccc--c--hh
Confidence 4567899999999999999999999999999999999999999999999999999999999999999875321 1 11
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
.... ....+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 1100 001111223479999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|+++|+.++|+||+++||||+|||++++.+...
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 189 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAE--------------------------------------------- 189 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999887754332
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+++++|++.||.+++.+|++++.....++++++..|...+...+ .+|++||+++
T Consensus 190 ----------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~----~~d~~egi~a 243 (254)
T PRK08259 190 ----------------------ELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVL----AAEALEGAAR 243 (254)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH----hhHHHHHHHH
Confidence 34899999999999999999998878889999999988766655 3999999999
Q ss_pred hhccCCCCC
Q 015820 351 RMVDRDIAP 359 (399)
Q Consensus 351 fl~ek~r~p 359 (399)
|+ +|+++|
T Consensus 244 f~-~~~~~~ 251 (254)
T PRK08259 244 FA-AGAGRH 251 (254)
T ss_pred HH-hhhccc
Confidence 99 664655
No 54
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=2e-50 Score=385.09 Aligned_cols=253 Identities=21% Similarity=0.271 Sum_probs=220.1
Q ss_pred CcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 015820 34 NQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (399)
Q Consensus 34 ~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (399)
+.+.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... ... .
T Consensus 9 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~---~ 84 (265)
T PLN02888 9 NLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVF-KGD---V 84 (265)
T ss_pred CeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhc-cch---h
Confidence 4778885 7899999999999999999999999999999999999999999999999999999999865321 111 1
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HH
Q 015820 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (399)
Q Consensus 113 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~ 191 (399)
......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 85 ---~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 161 (265)
T PLN02888 85 ---KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAR 161 (265)
T ss_pred ---hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHH
Confidence 11124456678899999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 271 (399)
+|++||++++|+||+++||||++|+++++.+...
T Consensus 162 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 195 (265)
T PLN02888 162 EVSLTAMPLTAETAERWGLVNHVVEESELLKKAR---------------------------------------------- 195 (265)
T ss_pred HHHHhCCccCHHHHHHcCCccEeeChHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999876643222
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
+++++|++.+|.+++.+|++++.....++++++..|...+..++. ..++|++||+++|
T Consensus 196 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~-~~~~d~~e~~~af 253 (265)
T PLN02888 196 ---------------------EVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYN-GMTKEQFQKMQEF 253 (265)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 348999999999999999999988888899999999877666541 1289999999999
Q ss_pred hccCCCCCCCCC
Q 015820 352 MVDRDIAPKWSP 363 (399)
Q Consensus 352 l~ek~r~p~~~~ 363 (399)
+ +| |+|+-.|
T Consensus 254 ~-ek-r~~~~~~ 263 (265)
T PLN02888 254 I-AG-RSSKKPS 263 (265)
T ss_pred H-hc-CCCCCCC
Confidence 9 88 7776443
No 55
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=2.1e-50 Score=383.73 Aligned_cols=253 Identities=30% Similarity=0.436 Sum_probs=225.0
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
.+..+.++..++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++.+.. ......
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~---~~~~~~ 79 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS---PEDGNA 79 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc---ccchhH
Confidence 35678888889999999999999999999999999999999999999999999999999999999999874 111222
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
...+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 236677788899999999999999999999999999999999999999999999999999999889999999999999 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCC-CChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
++|++||+.++++||+++|||++++++ +++.+...+
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~------------------------------------------- 196 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERALE------------------------------------------- 196 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHH-------------------------------------------
Confidence 999999999999999999999999986 455433332
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHh
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR 349 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~ 349 (399)
++++++. +|.++..+|+.++.....++++.+..|...+...+. ++|++||++
T Consensus 197 ------------------------~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~d~~eg~~ 248 (257)
T COG1024 197 ------------------------LARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFS---SEDFREGVR 248 (257)
T ss_pred ------------------------HHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhc---ChhHHHHHH
Confidence 3566666 999999999999998777799999999888877555 899999999
Q ss_pred hhhccCCCCCCC
Q 015820 350 ARMVDRDIAPKW 361 (399)
Q Consensus 350 afl~ek~r~p~~ 361 (399)
+|+ + |+|.|
T Consensus 249 a~~-~--r~p~~ 257 (257)
T COG1024 249 AFL-E--RKPVF 257 (257)
T ss_pred HHH-c--cCCCC
Confidence 999 5 78887
No 56
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1.8e-50 Score=382.47 Aligned_cols=246 Identities=22% Similarity=0.302 Sum_probs=213.9
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 015820 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (399)
Q Consensus 36 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (399)
|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.. .....+
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-------~~~~~~ 74 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-------DQCAAM 74 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-------hhHHHH
Confidence 678889999999999997 699999999999999999999999999999999999999999997531 111223
Q ss_pred HHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHHH
Q 015820 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (399)
Q Consensus 116 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l~ 194 (399)
...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ |++++|++++|.. +++|+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHH
Confidence 444567788899999999999999999999999999999999999999999999999987 4678999999999 99999
Q ss_pred HcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHHH
Q 015820 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE 274 (399)
Q Consensus 195 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 274 (399)
+||++++|+||+++|||++|+++.+ . ..+.
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~--~--~a~~---------------------------------------------- 183 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE--N--AALA---------------------------------------------- 183 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH--H--HHHH----------------------------------------------
Confidence 9999999999999999999997532 1 1110
Q ss_pred HHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHH-HHHHHHHHhhccCCCCcHHhhHhhhhc
Q 015820 275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV-REYRMSLQGVSRLISGDFYEGVRARMV 353 (399)
Q Consensus 275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~-~e~~~~~~~~~~~~s~d~~egv~afl~ 353 (399)
.++++|+++||.+++.+|++++.....++++++. .|...+...+. ++|++||+++|+
T Consensus 184 ------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~af~- 241 (251)
T TIGR03189 184 ------------------WFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMA---THDAVEGLNAFL- 241 (251)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhC---CHhHHHHHHHHH-
Confidence 1268999999999999999999887778887764 67676766666 999999999999
Q ss_pred cCCCCCCCCC
Q 015820 354 DRDIAPKWSP 363 (399)
Q Consensus 354 ek~r~p~~~~ 363 (399)
+| |+|.|.+
T Consensus 242 ek-r~p~~~~ 250 (251)
T TIGR03189 242 EK-RPALWED 250 (251)
T ss_pred hc-CCCCCCC
Confidence 98 9999974
No 57
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.1e-51 Score=384.33 Aligned_cols=245 Identities=22% Similarity=0.334 Sum_probs=219.3
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
|++.+.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... .
T Consensus 1 m~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-~--- 76 (249)
T PRK05870 1 MMDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGR-P--- 76 (249)
T ss_pred CCccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhccccc-c---
Confidence 566789999999999999999999999999999999999999999999999999999999999999987642111 1
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
....+..++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 122344455677788999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|++||++++|+||+++||||+++ +++.+...
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~--------------------------------------------- 189 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAAL--------------------------------------------- 189 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHH---------------------------------------------
Confidence 9999999999999999999999999 44543222
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHhhccCCCCcHHhhHh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRLISGDFYEGVR 349 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~ 349 (399)
+++++|++.||.+++.+|++++.... .+++++++.|...+...+. ++|++||++
T Consensus 190 ----------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~ 244 (249)
T PRK05870 190 ----------------------ELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQ---SPEFAARLA 244 (249)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhc---ChhHHHHHH
Confidence 34899999999999999999999877 7899999999998888877 999999999
Q ss_pred hhh
Q 015820 350 ARM 352 (399)
Q Consensus 350 afl 352 (399)
+|+
T Consensus 245 af~ 247 (249)
T PRK05870 245 AAQ 247 (249)
T ss_pred HHh
Confidence 999
No 58
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-50 Score=382.82 Aligned_cols=255 Identities=24% Similarity=0.265 Sum_probs=224.7
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (399)
...+.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... ...+..
T Consensus 5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~ 83 (260)
T PRK07827 5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGG-DPYDAA 83 (260)
T ss_pred CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhccc-CchhHH
Confidence 4468888999999999999999999999999999999999999999999999999999999999998754210 111222
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHH
Q 015820 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192 (399)
Q Consensus 113 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~ 192 (399)
..+...+.++++.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..+++
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~ 163 (260)
T PRK07827 84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR 163 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHH
Confidence 33455667788899999999999999999999999999999999999999999999999999999999999986645999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCH
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 272 (399)
|+++|+.++|+||+++|||++++++ +++...
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~~--l~~~a~----------------------------------------------- 194 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAADD--VDAAVA----------------------------------------------- 194 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchHH--HHHHHH-----------------------------------------------
Confidence 9999999999999999999999742 432222
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhh
Q 015820 273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM 352 (399)
Q Consensus 273 ~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl 352 (399)
+++++|++.||.+++.+|++++......+++.++.|...+...+. ++|+++|+++|+
T Consensus 195 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~af~ 251 (260)
T PRK07827 195 --------------------ALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFV---SDEAREGMTAFL 251 (260)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHh
Confidence 348899999999999999999998888899999999888888776 999999999999
Q ss_pred ccCCCCCCCC
Q 015820 353 VDRDIAPKWS 362 (399)
Q Consensus 353 ~ek~r~p~~~ 362 (399)
+| |+|+|.
T Consensus 252 -~k-r~p~~~ 259 (260)
T PRK07827 252 -QK-RPPRWA 259 (260)
T ss_pred -cC-CCCCCC
Confidence 88 899996
No 59
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-50 Score=381.57 Aligned_cols=245 Identities=23% Similarity=0.301 Sum_probs=216.3
Q ss_pred CcEEEEeeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 015820 34 NQVLVEGKAN---SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (399)
Q Consensus 34 ~~v~~~~~~~---v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (399)
+.|.++.+++ |++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++..... . .
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~-~-~- 79 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAM-G-G- 79 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccc-c-c-
Confidence 4588888774 99999999999999999999999999999999999999999999999999999998753211 1 1
Q ss_pred HHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-
Q 015820 111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (399)
Q Consensus 111 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~- 189 (399)
..+...+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 157 (251)
T PRK06023 80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR 157 (251)
T ss_pred --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence 11233455678889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
+++++++|+.++|+||+++|||++|||++++.+...
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 193 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETL-------------------------------------------- 193 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877653222
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHh
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR 349 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~ 349 (399)
+++++|++.||.+++.+|++++... ..+.+.+..|...+...+. ++|++||++
T Consensus 194 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~---~~~~~e~~~ 246 (251)
T PRK06023 194 -----------------------KAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLK---SAEARAAFE 246 (251)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence 3489999999999999999998764 4688888888888877776 999999999
Q ss_pred hhhccC
Q 015820 350 ARMVDR 355 (399)
Q Consensus 350 afl~ek 355 (399)
+|+ +|
T Consensus 247 af~-e~ 251 (251)
T PRK06023 247 AFM-RR 251 (251)
T ss_pred HHh-cC
Confidence 999 54
No 60
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-50 Score=377.51 Aligned_cols=240 Identities=23% Similarity=0.327 Sum_probs=214.5
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 015820 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (399)
Q Consensus 36 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (399)
+.++++++|++||||||+++|++|.+|+.+|.++++.++.+ ++++|||||.|++||+|+|+++... ...+
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~ 71 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF 71 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence 56788999999999999999999999999999999999865 8999999999999999999985211 1123
Q ss_pred HHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHHH
Q 015820 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (399)
Q Consensus 116 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l~ 194 (399)
...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHHH
Q 015820 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE 274 (399)
Q Consensus 195 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 274 (399)
+||++++|+||+++|||++|++ ++ ...
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~---~~-~a~------------------------------------------------- 178 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT---LA-DAQ------------------------------------------------- 178 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC---HH-HHH-------------------------------------------------
Confidence 9999999999999999999964 21 111
Q ss_pred HHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhcc
Q 015820 275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD 354 (399)
Q Consensus 275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~e 354 (399)
+++++|++.||.+++.+|++++.. .+++++++.|...+...+. ++|++||+++|+ +
T Consensus 179 ------------------~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~-~ 234 (243)
T PRK07854 179 ------------------AWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWA---SQDAIEAQVARI-E 234 (243)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh-C
Confidence 248899999999999999999875 6689999999888888776 999999999999 8
Q ss_pred CCCCCCCCC
Q 015820 355 RDIAPKWSP 363 (399)
Q Consensus 355 k~r~p~~~~ 363 (399)
| |+|.|++
T Consensus 235 k-r~p~~~~ 242 (243)
T PRK07854 235 K-RPPKFQG 242 (243)
T ss_pred C-CCCCCCC
Confidence 8 8999975
No 61
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.3e-50 Score=377.29 Aligned_cols=242 Identities=20% Similarity=0.202 Sum_probs=212.7
Q ss_pred EeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHH
Q 015820 39 EGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT 118 (399)
Q Consensus 39 ~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 118 (399)
+++++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++... ............
T Consensus 7 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~---~~~~~~~~~~~~ 82 (249)
T PRK07938 7 TPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT---PGFTALIDANRG 82 (249)
T ss_pred ccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc---cchhHHHHHHHH
Confidence 457899999999998 5999999999999999999999999999999999999999999987531 111222223344
Q ss_pred HHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHHHHcC
Q 015820 119 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG 197 (399)
Q Consensus 119 ~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l~ltG 197 (399)
+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|.. +++|+++|
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg 159 (249)
T PRK07938 83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA 159 (249)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence 5667888999999999999999999999999999999999999999999999986 4667899999998 99999999
Q ss_pred CCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHHHHHH
Q 015820 198 AKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIID 277 (399)
Q Consensus 198 ~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~ 277 (399)
+.++|+||+++|||++|||++++++...
T Consensus 160 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------------- 187 (249)
T PRK07938 160 ATITAAELHHFGSVEEVVPRDQLDEAAL---------------------------------------------------- 187 (249)
T ss_pred CcCCHHHHHHCCCccEEeCHHHHHHHHH----------------------------------------------------
Confidence 9999999999999999999877653322
Q ss_pred HHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhccCCC
Q 015820 278 SLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDI 357 (399)
Q Consensus 278 ~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~ek~r 357 (399)
+++++|++.||.+++.+|++++.....++++.++.|...+...+. ++|++||+++|+ +| |
T Consensus 188 ---------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~-ek-r 247 (249)
T PRK07938 188 ---------------EVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNL---AGVSDEHRDAFV-EK-R 247 (249)
T ss_pred ---------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CccHHHHHHHHH-hc-C
Confidence 348999999999999999999988788899999999888877776 999999999999 88 7
Q ss_pred CC
Q 015820 358 AP 359 (399)
Q Consensus 358 ~p 359 (399)
+|
T Consensus 248 ~p 249 (249)
T PRK07938 248 KA 249 (249)
T ss_pred CC
Confidence 76
No 62
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=3.3e-50 Score=379.77 Aligned_cols=244 Identities=30% Similarity=0.483 Sum_probs=227.6
Q ss_pred EEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHH
Q 015820 37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFF 116 (399)
Q Consensus 37 ~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 116 (399)
.++.+++|++|+||+|++.|++|.+|+.+|.++|+.++.|+++++||++|.|++||+|.|++++... +......+.
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~ 76 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF 76 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999998764 345667788
Q ss_pred HHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHHHH
Q 015820 117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 195 (399)
Q Consensus 117 ~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l~l 195 (399)
..++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.++++
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l 156 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL 156 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred cCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHHHH
Q 015820 196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275 (399)
Q Consensus 196 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 275 (399)
+|++++|+||+++||||+|++++++.+...
T Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~-------------------------------------------------- 186 (245)
T PF00378_consen 157 TGEPISAEEALELGLVDEVVPDEELDEEAL-------------------------------------------------- 186 (245)
T ss_dssp HTCEEEHHHHHHTTSSSEEESGGGHHHHHH--------------------------------------------------
T ss_pred ccccchhHHHHhhcceeEEcCchhhhHHHH--------------------------------------------------
Confidence 999999999999999999999988754333
Q ss_pred HHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhccC
Q 015820 276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDR 355 (399)
Q Consensus 276 ~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~ek 355 (399)
++++++++.+|.+++.+|+.+++.....+.+.++.|.+.+...+. ++|++||+++|+ ||
T Consensus 187 -----------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~f~-eK 245 (245)
T PF00378_consen 187 -----------------ELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFK---SEDFQEGIAAFL-EK 245 (245)
T ss_dssp -----------------HHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHT---SHHHHHHHHHHH-TT
T ss_pred -----------------HHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHh-Cc
Confidence 348999999999999999999999888899999999999999887 999999999999 76
No 63
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.5e-49 Score=388.03 Aligned_cols=256 Identities=19% Similarity=0.241 Sum_probs=216.5
Q ss_pred CCCcEEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCC
Q 015820 32 LCNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK 108 (399)
Q Consensus 32 ~~~~v~~~~--~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 108 (399)
.++.|.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... ...
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~-~~~ 141 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG-YVG 141 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc-ccc
Confidence 567788887 589999999999999999999999999999999999999999999999 8999999999764210 011
Q ss_pred hHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchH
Q 015820 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (399)
Q Consensus 109 ~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~ 188 (399)
......+ ....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~ 219 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ 219 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 1111111 12456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhc
Q 015820 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 267 (399)
Q Consensus 189 ~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 267 (399)
. +++|+++|+.++|+||+++||||+|+|++++++...
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~------------------------------------------ 257 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETV------------------------------------------ 257 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHH------------------------------------------
Confidence 8 999999999999999999999999999877654322
Q ss_pred CCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhh
Q 015820 268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG 347 (399)
Q Consensus 268 ~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~eg 347 (399)
+++++|+++||.+++.+|++++..... .......+...+...+. ++|++||
T Consensus 258 -------------------------~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~---s~d~~eg 308 (327)
T PLN02921 258 -------------------------KWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYG---SEEGNEG 308 (327)
T ss_pred -------------------------HHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhc---CHHHHHH
Confidence 348999999999999999999987543 33333333355555555 8999999
Q ss_pred HhhhhccCCCCCCCCC
Q 015820 348 VRARMVDRDIAPKWSP 363 (399)
Q Consensus 348 v~afl~ek~r~p~~~~ 363 (399)
+++|+ +| |+|.|+.
T Consensus 309 i~Af~-ek-r~p~f~~ 322 (327)
T PLN02921 309 RTAYL-EG-RAPDFSK 322 (327)
T ss_pred HHHHh-cc-CCCCCCC
Confidence 99999 98 9999974
No 64
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-50 Score=386.81 Aligned_cols=256 Identities=21% Similarity=0.234 Sum_probs=214.3
Q ss_pred CcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhh-HHH---hh-ccCC
Q 015820 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS-LYH---FM-NQGK 108 (399)
Q Consensus 34 ~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~-~~~---~~-~~~~ 108 (399)
+.+.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||.|++||+|+|+++ +.. .. ....
T Consensus 5 ~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~ 84 (298)
T PRK12478 5 QTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGR 84 (298)
T ss_pred eEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccc
Confidence 468899999999999999999999999999999999999999999999999999999999999985 211 00 0000
Q ss_pred hHHHHHH---HH---HHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEecccccc-CccCCCchhHH
Q 015820 109 LEECKDF---FR---TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI-GFHPDAGASFY 181 (399)
Q Consensus 109 ~~~~~~~---~~---~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~-Gl~p~~g~~~~ 181 (399)
......+ .. ....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++ |+++ |+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~- 161 (298)
T PRK12478 85 WDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW- 161 (298)
T ss_pred cCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH-
Confidence 0001111 01 11234567889999999999999999999999999999999999999999997 8875 3333
Q ss_pred HhhcchHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHH
Q 015820 182 LSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI 260 (399)
Q Consensus 182 L~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (399)
.+++|.. |++|++||++++|+||+++||||+|||++++++...+
T Consensus 162 -~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~---------------------------------- 206 (298)
T PRK12478 162 -LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAE---------------------------------- 206 (298)
T ss_pred -HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHH----------------------------------
Confidence 2458998 9999999999999999999999999998877643333
Q ss_pred HHHHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHhhccC
Q 015820 261 DIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRL 339 (399)
Q Consensus 261 ~~i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~~~~ 339 (399)
++++|+..||.+++.+|++++.... .++++++..|...+...+.
T Consensus 207 ---------------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~-- 251 (298)
T PRK12478 207 ---------------------------------VATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRN-- 251 (298)
T ss_pred ---------------------------------HHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc--
Confidence 3889999999999999999998766 4699999999999888876
Q ss_pred CCCcHH--------hhHhhhhccCCCCCCCCCCC
Q 015820 340 ISGDFY--------EGVRARMVDRDIAPKWSPPS 365 (399)
Q Consensus 340 ~s~d~~--------egv~afl~ek~r~p~~~~~~ 365 (399)
++|++ ||++||+ +| |+|+|...+
T Consensus 252 -s~d~~e~~~~~~~egv~Af~-ek-R~p~f~~~~ 282 (298)
T PRK12478 252 -TPDALEFIRTAETQGVRAAV-ER-RDGPFGDYS 282 (298)
T ss_pred -ChhHHHHHHHHHHHHHHHHH-Hh-cCCcccccC
Confidence 89997 5999999 99 999998654
No 65
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.7e-49 Score=373.81 Aligned_cols=251 Identities=16% Similarity=0.190 Sum_probs=217.0
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (399)
++.+.++.+++|++|+||||++.|++|.+|+.+|.++++.++ +++++|||||.|++||+|+|++++...... ....
T Consensus 3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~--~~~~ 78 (255)
T PRK07112 3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDA--GRAD 78 (255)
T ss_pred CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhcccc--chhh
Confidence 457899999999999999999999999999999999999998 359999999999999999999987542111 1111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HH
Q 015820 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (399)
Q Consensus 113 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~ 191 (399)
......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +.+|++++|.. ++
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~ 157 (255)
T PRK07112 79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAH 157 (255)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHH
Confidence 11233446778889999999999999999999999999999999999999999999999999865 46799999999 99
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 271 (399)
+|+++|++++|+||+++||||+++++++. ...
T Consensus 158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~---------------------------------------------- 189 (255)
T PRK07112 158 YMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLR---------------------------------------------- 189 (255)
T ss_pred HHHHhCCcccHHHHHHcCCCceecCcHHH--HHH----------------------------------------------
Confidence 99999999999999999999999986542 111
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
+++++|++.+|.+++.+|++++.. ...+.+.++.|.......+. ++|++||+.+|
T Consensus 190 ---------------------~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~af 244 (255)
T PRK07112 190 ---------------------KHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFA---DPENLRKIARY 244 (255)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHc---ChHHHHHHHHH
Confidence 237899999999999999999875 55688999999888887776 99999999999
Q ss_pred hccCCCCCCCCC
Q 015820 352 MVDRDIAPKWSP 363 (399)
Q Consensus 352 l~ek~r~p~~~~ 363 (399)
+ +| |+|.|+.
T Consensus 245 ~-~k-r~p~~~~ 254 (255)
T PRK07112 245 V-ET-GKFPWEA 254 (255)
T ss_pred H-cC-CCCCCCC
Confidence 9 88 9999973
No 66
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=2.8e-49 Score=379.42 Aligned_cols=253 Identities=20% Similarity=0.241 Sum_probs=220.3
Q ss_pred CccCCCcEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC--CCcccCCChhhHHHhhc
Q 015820 29 TDDLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG--RAFCAGGDIVSLYHFMN 105 (399)
Q Consensus 29 ~~~~~~~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g--~~F~aG~Dl~~~~~~~~ 105 (399)
.+..+..|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....
T Consensus 6 ~~~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~- 83 (278)
T PLN03214 6 PPGATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPK- 83 (278)
T ss_pred CCCCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccc-
Confidence 344555889998 6899999999985 7999999999999999999999999999999998 6999999999875311
Q ss_pred cCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCc-cCCCchhHHHhh
Q 015820 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF-HPDAGASFYLSH 184 (399)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl-~p~~g~~~~L~r 184 (399)
........+......++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|++
T Consensus 84 -~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~ 162 (278)
T PLN03214 84 -TSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGR 162 (278)
T ss_pred -cchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHH
Confidence 111222233334456778899999999999999999999999999999999999999999999999 599999999999
Q ss_pred cchHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHH
Q 015820 185 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV 263 (399)
Q Consensus 185 ~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (399)
++|.. +++|++||+.++|+||+++||||+|||++++.+...
T Consensus 163 ~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------- 204 (278)
T PLN03214 163 VIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAA-------------------------------------- 204 (278)
T ss_pred hcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHH--------------------------------------
Confidence 99999 999999999999999999999999999876643222
Q ss_pred HhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCc
Q 015820 264 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD 343 (399)
Q Consensus 264 ~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d 343 (399)
+++++|++.||.+++.+|++++.....+++++++.|.+.+...+. ++|
T Consensus 205 -----------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d 252 (278)
T PLN03214 205 -----------------------------SAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLS---EPS 252 (278)
T ss_pred -----------------------------HHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC---CHH
Confidence 348899999999999999999988888899999999888877776 999
Q ss_pred HHhhHhhhhccC
Q 015820 344 FYEGVRARMVDR 355 (399)
Q Consensus 344 ~~egv~afl~ek 355 (399)
++||+++|+ +|
T Consensus 253 ~~egi~afl-ek 263 (278)
T PLN03214 253 IIKALGGVM-ER 263 (278)
T ss_pred HHHHHHHHH-HH
Confidence 999999999 65
No 67
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=4.4e-49 Score=382.29 Aligned_cols=259 Identities=17% Similarity=0.211 Sum_probs=217.4
Q ss_pred CCcEEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-------CCcccCCChhhHHHh
Q 015820 33 CNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-------RAFCAGGDIVSLYHF 103 (399)
Q Consensus 33 ~~~v~~~~--~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-------~~F~aG~Dl~~~~~~ 103 (399)
+..+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 44688888 899999999999999999999999999999999999999999999998 599999999975321
Q ss_pred h---ccCCh-H--HHHHH-HHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEe-CceEEeccccccCccCC
Q 015820 104 M---NQGKL-E--ECKDF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPD 175 (399)
Q Consensus 104 ~---~~~~~-~--~~~~~-~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~-~~a~f~~pe~~~Gl~p~ 175 (399)
. ..... . ..... ......+...+..+||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 0 00000 0 00011 1112346667889999999999999999999999999999999 69999999999999999
Q ss_pred CchhHHHhhcchHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcc
Q 015820 176 AGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKN 254 (399)
Q Consensus 176 ~g~~~~L~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (399)
+|++++|++++|.. +++|++||+.++|+||+++|||+++||++++++...
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------- 232 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEAL----------------------------- 232 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHH-----------------------------
Confidence 99999999999998 999999999999999999999999999877754322
Q ss_pred hhhhHHHHHHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 015820 255 SVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQ 334 (399)
Q Consensus 255 ~~~~~~~~i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~ 334 (399)
+++++|++.+|.+++.+|++++..... ..+....|.+.+..
T Consensus 233 --------------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~ 273 (302)
T PRK08321 233 --------------------------------------EWAREINGKSPTAMRMLKYAFNLTDDG-LVGQQLFAGEATRL 273 (302)
T ss_pred --------------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHH
Confidence 348999999999999999999876543 44445567777777
Q ss_pred hhccCCCCcHHhhHhhhhccCCCCCCCCCC
Q 015820 335 GVSRLISGDFYEGVRARMVDRDIAPKWSPP 364 (399)
Q Consensus 335 ~~~~~~s~d~~egv~afl~ek~r~p~~~~~ 364 (399)
.+. ++|+++|+.+|+ +| |+|.|+..
T Consensus 274 ~~~---~~d~~egi~af~-ek-r~p~~~~~ 298 (302)
T PRK08321 274 AYM---TDEAQEGRDAFL-EK-RDPDWSDF 298 (302)
T ss_pred Hhc---CHHHHHHHHHHh-cc-CCCCCCCC
Confidence 666 999999999999 88 89999753
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.4e-48 Score=367.73 Aligned_cols=244 Identities=19% Similarity=0.224 Sum_probs=219.7
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
|+..+.++.+++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|.|++++.... .. .
T Consensus 3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~--~~-~- 78 (249)
T PRK07110 3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQ--TG-K- 78 (249)
T ss_pred CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhcc--ch-h-
Confidence 5678889999999999999999999999999999999999999999999999999999999999999875421 11 1
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-H
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 190 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a 190 (399)
..+. . +.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 -~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 -GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred -hhHh-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 1122 2 5678889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC
Q 015820 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 270 (399)
Q Consensus 191 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 270 (399)
++|++||++++++||+++|||++|++++++.+...
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 190 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKAL--------------------------------------------- 190 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877653222
Q ss_pred CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhh
Q 015820 271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA 350 (399)
Q Consensus 271 ~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~a 350 (399)
+.++++++.||.+++.+|+.++......+++.++.|...+...+. ++|++|||++
T Consensus 191 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~~ 245 (249)
T PRK07110 191 ----------------------ELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFH---QPEVKRRIES 245 (249)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC---CHhHHHHHHH
Confidence 238999999999999999999998888999999999999888887 9999999987
Q ss_pred hh
Q 015820 351 RM 352 (399)
Q Consensus 351 fl 352 (399)
.-
T Consensus 246 ~~ 247 (249)
T PRK07110 246 LY 247 (249)
T ss_pred hc
Confidence 53
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=364.51 Aligned_cols=247 Identities=22% Similarity=0.249 Sum_probs=214.4
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 112 (399)
++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... ....
T Consensus 3 ~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~----~~~~ 78 (258)
T PRK06190 3 EPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDG----SAYG 78 (258)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhccc----chhh
Confidence 357889999999999999999999999999999999999999999999999999999999999999875321 1111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HH
Q 015820 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 191 (399)
Q Consensus 113 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~ 191 (399)
. ...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 156 (258)
T PRK06190 79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR 156 (258)
T ss_pred H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1 23456778889999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 271 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 271 (399)
+|++||++++|+||+++||||+++|++++++...
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------- 190 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRAR---------------------------------------------- 190 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877654222
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
+++++|+++||.+++.+|++++.....+++++++.|...+...+.+.....+.+...+|
T Consensus 191 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~ 249 (258)
T PRK06190 191 ---------------------RLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAV 249 (258)
T ss_pred ---------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 34899999999999999999999888899999999999988877622113344444445
Q ss_pred h
Q 015820 352 M 352 (399)
Q Consensus 352 l 352 (399)
+
T Consensus 250 ~ 250 (258)
T PRK06190 250 M 250 (258)
T ss_pred H
Confidence 5
No 70
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=4.4e-47 Score=390.49 Aligned_cols=255 Identities=14% Similarity=0.074 Sum_probs=223.2
Q ss_pred cEEEEeeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEecCCCC-cccCCChhh
Q 015820 35 QVLVEGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGFVSMKGSGRA-FCAGGDIVS 99 (399)
Q Consensus 35 ~v~~~~~~~v~~Itlnrp~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~vVltg~g~~-F~aG~Dl~~ 99 (399)
.+.++++++|++||||||++. |+|+.+|+.+|.+++..++. |+++|+|||||.|+. ||+|+|++.
T Consensus 259 ~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~ 338 (546)
T TIGR03222 259 DVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALL 338 (546)
T ss_pred EEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccc
Confidence 345566899999999999999 99999999999999999984 599999999999987 999999984
Q ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEE-cceeeccc-ccccccCCeEEE-------eCceEEecccccc
Q 015820 100 LYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL-NGVTMGGG-AGVSIPGTFRVA-------CGKTVFATPETLI 170 (399)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav-~G~a~GgG-~~Lal~cD~ria-------~~~a~f~~pe~~~ 170 (399)
.. ..+...........++++..+..+||||||+| ||+|+||| ++|+++||+||+ +++++|++||+++
T Consensus 339 ~~----~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~l 414 (546)
T TIGR03222 339 EA----HKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNF 414 (546)
T ss_pred cc----cccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcccc
Confidence 21 11111112233344567888999999999999 89999999 999999999999 8999999999999
Q ss_pred CccCCCchhHHHhhcc-hHH-H--HHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhc
Q 015820 171 GFHPDAGASFYLSHLP-GHL-G--EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYS 246 (399)
Q Consensus 171 Gl~p~~g~~~~L~r~~-g~~-a--~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 246 (399)
|++|++|++++|++++ |.. + ++|++||+.++|+||+++|||+++++++++.+...
T Consensus 415 Gl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~--------------------- 473 (546)
T TIGR03222 415 GLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIR--------------------- 473 (546)
T ss_pred ccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHH---------------------
Confidence 9999999999999998 887 7 56999999999999999999999999987754322
Q ss_pred cccCCCcchhhhHHHHHHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHH-H
Q 015820 247 DLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-L 325 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~-l 325 (399)
+++++|+++||.+++.+|++++.....+++++ +
T Consensus 474 ----------------------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~ 507 (546)
T TIGR03222 474 ----------------------------------------------IALEERASFSPDALTGLEANLRFAGPETMETRIF 507 (546)
T ss_pred ----------------------------------------------HHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHH
Confidence 24899999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccCCCCcHHh---hHhhhhccCCCCCCCCCCC
Q 015820 326 VREYRMSLQGVSRLISGDFYE---GVRARMVDRDIAPKWSPPS 365 (399)
Q Consensus 326 ~~e~~~~~~~~~~~~s~d~~e---gv~afl~ek~r~p~~~~~~ 365 (399)
.+|...+..++. ++|.+| |+++|+ +| |+|+|+-.+
T Consensus 508 ~~e~~~~~~~~~---~~d~~e~~~g~~af~-ek-r~p~f~~~~ 545 (546)
T TIGR03222 508 GRLTAWQNWIFN---RPNAVGENGALKVYG-SG-KKAQFDMER 545 (546)
T ss_pred HHHHHHHHHHhc---CCcccchhhHHHHHc-cC-CCCCCCccC
Confidence 999999988887 999999 999999 99 999998543
No 71
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=6.8e-47 Score=390.29 Aligned_cols=257 Identities=15% Similarity=0.068 Sum_probs=223.2
Q ss_pred CCcEEE--EeeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEecCC-CCcccCC
Q 015820 33 CNQVLV--EGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGFVSMKGSG-RAFCAGG 95 (399)
Q Consensus 33 ~~~v~~--~~~~~v~~Itlnrp~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~vVltg~g-~~F~aG~ 95 (399)
|.++.+ +++++|++||||||+++ |+||.+|+.+|.++++.++. |+++|+|||||.| ++||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 434444 44689999999999988 68999999999999999986 7899999999999 5999999
Q ss_pred ChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEc-ceeeccc-ccccccCCeEEEe-------CceEEecc
Q 015820 96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN-GVTMGGG-AGVSIPGTFRVAC-------GKTVFATP 166 (399)
Q Consensus 96 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~-G~a~GgG-~~Lal~cD~ria~-------~~a~f~~p 166 (399)
|++.+.. .+..........++.++.++..+||||||+|| |+|+||| ++|+++||+||++ ++++|++|
T Consensus 339 Dl~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~p 414 (550)
T PRK08184 339 DATLLAH----KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLS 414 (550)
T ss_pred Chhhhcc----cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECc
Confidence 9873221 11111122334456678889999999999997 9999999 9999999999999 99999999
Q ss_pred ccccCccCCCchhHHHhhc-chHH-HHHH--HHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHH
Q 015820 167 ETLIGFHPDAGASFYLSHL-PGHL-GEFL--ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACL 242 (399)
Q Consensus 167 e~~~Gl~p~~g~~~~L~r~-~g~~-a~~l--~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~ 242 (399)
|+++|++|++|++++|+++ +|.. |+++ ++||++++|+||+++||||+++|++++++...
T Consensus 415 e~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~----------------- 477 (550)
T PRK08184 415 ALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVR----------------- 477 (550)
T ss_pred cccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHH-----------------
Confidence 9999999999999999988 6998 8887 59999999999999999999999987754333
Q ss_pred HHhccccCCCcchhhhHHHHHHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHH
Q 015820 243 EKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFD 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~ 322 (399)
+++++|++.||.+++.+|++++.....+++
T Consensus 478 --------------------------------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~ 507 (550)
T PRK08184 478 --------------------------------------------------IALEERASLSPDALTGMEANLRFAGPETME 507 (550)
T ss_pred --------------------------------------------------HHHHHHHhCCHHHHHHHHHHHHhcCCCCHH
Confidence 348999999999999999999999999999
Q ss_pred HH-HHHHHHHHHHhhccCCCCcHHh---hHhhhhccCCCCCCCCCCC
Q 015820 323 EC-LVREYRMSLQGVSRLISGDFYE---GVRARMVDRDIAPKWSPPS 365 (399)
Q Consensus 323 ~~-l~~e~~~~~~~~~~~~s~d~~e---gv~afl~ek~r~p~~~~~~ 365 (399)
++ +.+|...+..++. ++|.+| |+++|+ +| |+|+|+..+
T Consensus 508 ~~~~~~e~~~~~~~~~---~~d~~e~~~g~~af~-ek-r~~~f~~~~ 549 (550)
T PRK08184 508 TRIFGRLTAWQNWIFQ---RPNAVGEKGALKVYG-TG-QKAQFDWNR 549 (550)
T ss_pred HHHHHHHHHHHHHHhc---CCcccccchHHHHhc-cC-CCCCCCCCC
Confidence 99 9999999988887 999999 999999 99 999998765
No 72
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.1e-46 Score=347.23 Aligned_cols=215 Identities=20% Similarity=0.280 Sum_probs=190.5
Q ss_pred CCCcEEEEee-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhcc
Q 015820 32 LCNQVLVEGK-----ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106 (399)
Q Consensus 32 ~~~~v~~~~~-----~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~ 106 (399)
|+++|.++.. ++|++|+||||++ |+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....
T Consensus 1 ~~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~-- 77 (222)
T PRK05869 1 MNEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLS-- 77 (222)
T ss_pred CccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccC--
Confidence 5677777766 8899999999985 9999999999999999999999999999999999999999999875321
Q ss_pred CChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcc
Q 015820 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186 (399)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~ 186 (399)
..........+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++
T Consensus 78 --~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i 155 (222)
T PRK05869 78 --AQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA 155 (222)
T ss_pred --hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh
Confidence 112223344567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHh
Q 015820 187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK 265 (399)
Q Consensus 187 g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (399)
|.. ++++++||++++|+||+++||||+++|++++.+...
T Consensus 156 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------- 195 (222)
T PRK05869 156 GPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAA---------------------------------------- 195 (222)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHH----------------------------------------
Confidence 998 999999999999999999999999999877654322
Q ss_pred hcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhccc
Q 015820 266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF 318 (399)
Q Consensus 266 ~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~ 318 (399)
+++++|+..+|.+++.+|++++...+
T Consensus 196 ---------------------------~~a~~ia~~~~~a~~~~K~~~~~~~~ 221 (222)
T PRK05869 196 ---------------------------AWARRFLDGPPHALAAAKAGISDVYE 221 (222)
T ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 34899999999999999999987643
No 73
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-45 Score=350.97 Aligned_cols=235 Identities=21% Similarity=0.263 Sum_probs=200.5
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhc-c-----
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-Q----- 106 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~-~----- 106 (399)
++.+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .
T Consensus 3 ~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 82 (288)
T PRK08290 3 YEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ 82 (288)
T ss_pred CceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccc
Confidence 4568899999999999999999999999999999999999999999999999999999999999998632110 0
Q ss_pred -----------CC-hHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccC
Q 015820 107 -----------GK-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP 174 (399)
Q Consensus 107 -----------~~-~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p 174 (399)
.. ..........+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~ 161 (288)
T PRK08290 83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-P 161 (288)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-C
Confidence 00 0111112234456777889999999999999999999999999999999999999999999998 4
Q ss_pred CCchhHHHhhcchHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCc
Q 015820 175 DAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK 253 (399)
Q Consensus 175 ~~g~~~~L~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (399)
+ ++.+++++++|.. +++|++||+.++|+||+++|||+++|+++++.+...
T Consensus 162 ~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~---------------------------- 212 (288)
T PRK08290 162 G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETL---------------------------- 212 (288)
T ss_pred c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHH----------------------------
Confidence 4 4567789999999 999999999999999999999999999877654322
Q ss_pred chhhhHHHHHHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccC-CHHHHHHHHHHHH
Q 015820 254 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMS 332 (399)
Q Consensus 254 ~~~~~~~~~i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~-~~~~~l~~e~~~~ 332 (399)
+++++|++.||.+++.+|++++..... ++++++..|....
T Consensus 213 ---------------------------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~ 253 (288)
T PRK08290 213 ---------------------------------------ELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDLH 253 (288)
T ss_pred ---------------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 348999999999999999999988765 6999999998887
Q ss_pred HHhh
Q 015820 333 LQGV 336 (399)
Q Consensus 333 ~~~~ 336 (399)
...+
T Consensus 254 ~~~~ 257 (288)
T PRK08290 254 QLGH 257 (288)
T ss_pred HHcc
Confidence 7655
No 74
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=325.30 Aligned_cols=258 Identities=22% Similarity=0.302 Sum_probs=234.4
Q ss_pred CcEEEEe----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCC
Q 015820 34 NQVLVEG----KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK 108 (399)
Q Consensus 34 ~~v~~~~----~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 108 (399)
..+.+++ +.||.+|-+|||.+.|+|+..|+++|.++++.+..|+.+|+|+|++.- +.||+|+||++.... +
T Consensus 27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M----s 102 (291)
T KOG1679|consen 27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM----S 102 (291)
T ss_pred ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----C
Confidence 4566654 558999999999999999999999999999999999999999999985 899999999997643 4
Q ss_pred hHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchH
Q 015820 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188 (399)
Q Consensus 109 ~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~ 188 (399)
..+...|...+..++..+.++|.||||+|+|.|+|||++|+++||+|+|+++++|+++|.+++++|++|++++|+|.+|.
T Consensus 103 ~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ 182 (291)
T KOG1679|consen 103 PSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGV 182 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhc
Q 015820 189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 267 (399)
Q Consensus 189 ~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 267 (399)
. +++|++||+.+++.||...||||++|...+-.+.+.
T Consensus 183 alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~------------------------------------------ 220 (291)
T KOG1679|consen 183 ALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAY------------------------------------------ 220 (291)
T ss_pred HHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHH------------------------------------------
Confidence 9 999999999999999999999999998754322111
Q ss_pred CCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhh
Q 015820 268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG 347 (399)
Q Consensus 268 ~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~eg 347 (399)
+-|.++|++|.-+.|.++++.|..++.+.+.++..++..|..-.++.+. ++|..||
T Consensus 221 ---------------------~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~---t~drLeg 276 (291)
T KOG1679|consen 221 ---------------------QKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIP---TKDRLEG 276 (291)
T ss_pred ---------------------HHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCc---HHHHHHH
Confidence 1123569999999999999999999999999999999999888888876 9999999
Q ss_pred HhhhhccCCCCCCCCC
Q 015820 348 VRARMVDRDIAPKWSP 363 (399)
Q Consensus 348 v~afl~ek~r~p~~~~ 363 (399)
+.+|. +| |+|.|++
T Consensus 277 laaf~-ek-r~p~y~G 290 (291)
T KOG1679|consen 277 LAAFK-EK-RKPEYKG 290 (291)
T ss_pred HHHHH-hh-cCCCcCC
Confidence 99999 88 9999975
No 75
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3e-44 Score=344.75 Aligned_cols=249 Identities=16% Similarity=0.174 Sum_probs=201.8
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEecC-CCCcccCCChhhHHHhhcc
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWEN-----DPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQ 106 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~-----d~~v~~vVltg~-g~~F~aG~Dl~~~~~~~~~ 106 (399)
.-.|.++.+++|++|+|| |++.|+||.+|+.+|.+++++++. |+++++|||||. |++||+|+|++++......
T Consensus 16 ~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~ 94 (287)
T PRK08788 16 QLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRA 94 (287)
T ss_pred ceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccc
Confidence 345666778999999996 889999999999999999999998 889999999999 7999999999987532111
Q ss_pred CChHHHHHHHHHHHHHHHHHc---cCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHh
Q 015820 107 GKLEECKDFFRTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS 183 (399)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~i~---~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~ 183 (399)
.+......+...+...+..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~ 174 (287)
T PRK08788 95 GDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLA 174 (287)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHH
Confidence 111112222222233333332 79999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHH
Q 015820 184 HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDI 262 (399)
Q Consensus 184 r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (399)
+++|.. +++|++||+.++|+||+++||||+++|++++.+...
T Consensus 175 ~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~------------------------------------- 217 (287)
T PRK08788 175 RRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVR------------------------------------- 217 (287)
T ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH-------------------------------------
Confidence 999999 999999999999999999999999999887653222
Q ss_pred HHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCC
Q 015820 263 VDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISG 342 (399)
Q Consensus 263 i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~ 342 (399)
+++++|++. |.+....|+..+.....++.+.++.|......+++ ..+
T Consensus 218 ------------------------------~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 264 (287)
T PRK08788 218 ------------------------------TFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQ--LEE 264 (287)
T ss_pred ------------------------------HHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhh--ccc
Confidence 237888876 77777777777766667899999998777766554 144
Q ss_pred cHHhhHhhhh
Q 015820 343 DFYEGVRARM 352 (399)
Q Consensus 343 d~~egv~afl 352 (399)
.-.+-|..|+
T Consensus 265 ~~~~~~~~~~ 274 (287)
T PRK08788 265 KDLRTMERLV 274 (287)
T ss_pred ccHHHHHHHH
Confidence 5677777777
No 76
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.3e-44 Score=384.98 Aligned_cols=287 Identities=18% Similarity=0.228 Sum_probs=224.0
Q ss_pred cEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 015820 35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (399)
Q Consensus 35 ~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (399)
.+.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~ 85 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFA-APEEELS 85 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhcc-CCHHHHH
Confidence 567774 78999999999999999999999999999999999999999999999999999999998753211 1222334
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHH
Q 015820 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (399)
Q Consensus 114 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~ 192 (399)
.+...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ 165 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE 165 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence 5556677788899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCH
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 272 (399)
|++||++++|+||+++||||++|+++++.+.+.++++.....+....... . +...... .+.+..++..
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~----~---~~~~p~a--~~~~~~~~~~--- 233 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR----Q---PKLEPLK--LSKIEAMMSF--- 233 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc----C---ccccccc--ccchhHHHHH---
Confidence 99999999999999999999999998887655555422111100000000 0 0000000 0000000000
Q ss_pred HHHHHHHHhhhccCCchHHHH-HHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 273 EEIIDSLESEASLINDPWCGS-TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 273 ~ei~~~l~~~~~~~~~~~a~~-~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
..+++ +.++..+..|.++ .++++++.+...+++++++.|.+.+..++. ++|++||+++|
T Consensus 234 ----------------~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~d~~egi~aF 293 (715)
T PRK11730 234 ----------------TTAKGMVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKLAK---TNVARALVGIF 293 (715)
T ss_pred ----------------HHHHHHHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 11111 1245667777777 578899998888999999999999999887 99999999999
Q ss_pred hccC
Q 015820 352 MVDR 355 (399)
Q Consensus 352 l~ek 355 (399)
+ ++
T Consensus 294 ~-~~ 296 (715)
T PRK11730 294 L-ND 296 (715)
T ss_pred H-HH
Confidence 9 54
No 77
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-44 Score=337.61 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=198.5
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 111 (399)
|++.+.++.+++|++|||||| +.|++|.+|+.+|.++++.++ +++++|||+|.|++||+|+|++++... ...
T Consensus 1 ~~~~i~~~~~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~ 72 (229)
T PRK06213 1 MSELVSYTLEDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQA 72 (229)
T ss_pred CcceEEEEecCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHh
Confidence 345789999999999999998 479999999999999999988 457999999999999999999987531 223
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCc-eEEeccccccCccCCCchhHHHhhcchHH-
Q 015820 112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL- 189 (399)
Q Consensus 112 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~- 189 (399)
...+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|+..++++++|..
T Consensus 73 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~ 152 (229)
T PRK06213 73 AIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSA 152 (229)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHH
Confidence 3345566778888999999999999999999999999999999999999 99999999999998888888899999998
Q ss_pred HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCC
Q 015820 190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269 (399)
Q Consensus 190 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 269 (399)
+++++++|++++|+||+++||||+|++++++.+...
T Consensus 153 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 188 (229)
T PRK06213 153 FQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQ-------------------------------------------- 188 (229)
T ss_pred HHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877653222
Q ss_pred CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 015820 270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS 332 (399)
Q Consensus 270 ~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~ 332 (399)
++++++++.+|.+++.+|++++......+.++++.|.+.+
T Consensus 189 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 189 -----------------------AAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred -----------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 3488999999999999999999887777888888776543
No 78
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-44 Score=348.17 Aligned_cols=218 Identities=20% Similarity=0.234 Sum_probs=186.4
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccC--C-
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG--K- 108 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~--~- 108 (399)
.++.|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++....... .
T Consensus 8 ~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~ 87 (302)
T PRK08272 8 NLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGG 87 (302)
T ss_pred CCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccc
Confidence 3567899999999999999999999999999999999999999999999999999999999999999876421100 0
Q ss_pred ----------------hH--HHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEecccccc
Q 015820 109 ----------------LE--ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI 170 (399)
Q Consensus 109 ----------------~~--~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~ 170 (399)
.. ....++..++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~ 167 (302)
T PRK08272 88 AYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRV 167 (302)
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhc
Confidence 00 011234556677888999999999999999999999999999999999999999999998
Q ss_pred CccCCCchhHHHhhcchHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhcccc
Q 015820 171 GFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLV 249 (399)
Q Consensus 171 Gl~p~~g~~~~L~r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 249 (399)
|.+|+. ..+++++|.. |++|++||++|+|+||+++||||+++|++++.+...
T Consensus 168 gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~------------------------ 220 (302)
T PRK08272 168 WGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTE------------------------ 220 (302)
T ss_pred ccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHH------------------------
Confidence 666643 3578889999 999999999999999999999999999877654333
Q ss_pred CCCcchhhhHHHHHHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccC
Q 015820 250 YPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ 319 (399)
Q Consensus 250 ~~~~~~~~~~~~~i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~ 319 (399)
+++++|++.||.+++.+|++++..++.
T Consensus 221 -------------------------------------------~la~~ia~~~~~a~~~~K~~l~~~~~~ 247 (302)
T PRK08272 221 -------------------------------------------RLVERIAAVPVNQLAMVKLAVNSALLQ 247 (302)
T ss_pred -------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999987653
No 79
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-44 Score=321.11 Aligned_cols=261 Identities=21% Similarity=0.315 Sum_probs=226.3
Q ss_pred CCCcEEEE---eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhc---
Q 015820 32 LCNQVLVE---GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN--- 105 (399)
Q Consensus 32 ~~~~v~~~---~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~--- 105 (399)
.+..+.+. .++.|.++.||||.|.|+||..|+.|+.++++.+..||++|+|||+|.|+.||+|+|+..+.....
T Consensus 17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~ 96 (292)
T KOG1681|consen 17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQP 96 (292)
T ss_pred ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcccc
Confidence 34544444 345799999999999999999999999999999999999999999999999999999876643211
Q ss_pred cC-----ChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhH
Q 015820 106 QG-----KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF 180 (399)
Q Consensus 106 ~~-----~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~ 180 (399)
++ ....+.++...+++-+..+.+||||||++|||+|+|||+.|..+||+|+|+++|.|+.-|+.+|+..+.|...
T Consensus 97 ~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 97 EGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 11 1245567778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHH--HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhh
Q 015820 181 YLSHLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIH 258 (399)
Q Consensus 181 ~L~r~~g~~--a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (399)
+||..+|.+ ++++.+|++.|+|.||++.|||.+|+|+.+.+ ...
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~--------------------------------- 222 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNG--------------------------------- 222 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-Hhh---------------------------------
Confidence 999999954 99999999999999999999999999975432 111
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhcc
Q 015820 259 RIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSR 338 (399)
Q Consensus 259 ~~~~i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~ 338 (399)
+..+|..|+.++|.++..||+.++.+++.+.+++|.+-..+....+.
T Consensus 223 --------------------------------~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~- 269 (292)
T KOG1681|consen 223 --------------------------------ALPMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLL- 269 (292)
T ss_pred --------------------------------hHHHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHH-
Confidence 12468999999999999999999999999999999999888777666
Q ss_pred CCCCcHHhhHhhhhccCCCCCCCC
Q 015820 339 LISGDFYEGVRARMVDRDIAPKWS 362 (399)
Q Consensus 339 ~~s~d~~egv~afl~ek~r~p~~~ 362 (399)
++|+.+++.|-+ +|..++.|+
T Consensus 270 --s~Dl~~av~a~m-~k~k~~tfs 290 (292)
T KOG1681|consen 270 --SDDLVKAVMAQM-EKLKTVTFS 290 (292)
T ss_pred --HHHHHHHHHHHh-hcCCCCCcc
Confidence 999999999999 662344465
No 80
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=7.1e-43 Score=338.73 Aligned_cols=286 Identities=16% Similarity=0.245 Sum_probs=212.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHHHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF 122 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 122 (399)
+++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ........+...++.+
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-~~~~~~~~~~~~~~~l 116 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-GNPQEYRQYMRLFNDM 116 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-cChhHHHHHHHHHHHH
Confidence 566999999999999999999999999999999999999999999 69999999998764221 1122334455556778
Q ss_pred HHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHHHHcCCCCC
Q 015820 123 IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLN 201 (399)
Q Consensus 123 ~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l~ltG~~i~ 201 (399)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |+++++||++++
T Consensus 117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 8889999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccC---CCcchhhhHHHHHHhhcCCCCHHHHHHH
Q 015820 202 GAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVY---PDKNSVIHRIDIVDKCFGLDTVEEIIDS 278 (399)
Q Consensus 202 A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~f~~~~~~ei~~~ 278 (399)
|+||+++|||++++|+.+++ .++.+.. ...-...+..|....+ +........+.+++.+-. ....+-
T Consensus 197 A~EA~~~GLVd~VVp~~~~~---~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~l~-- 266 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVD---GKFVANP---LVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTI--DLSLLD-- 266 (360)
T ss_pred HHHHHHcCChheecCchhcC---cchhcCc---ccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccc--hHhHHH--
Confidence 99999999999999987762 1111000 0001111122222111 111112222222222111 111111
Q ss_pred HHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhccC
Q 015820 279 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDR 355 (399)
Q Consensus 279 l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~ek 355 (399)
+-..+++.+++...|..+.-+++-++......++..-..-+..+.-.+ ..+..+|++||. ++
T Consensus 267 ----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~ 328 (360)
T TIGR03200 267 ----------EAVEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNM----MNEARTGFRAFN-EG 328 (360)
T ss_pred ----------HHHHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhc----ccccchhhHHHh-cc
Confidence 112235778888999999999999998877666665444444444333 478899999999 63
No 81
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=6.4e-43 Score=373.77 Aligned_cols=284 Identities=18% Similarity=0.207 Sum_probs=222.5
Q ss_pred CCCcEEEEe-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCC
Q 015820 32 LCNQVLVEG-KANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK 108 (399)
Q Consensus 32 ~~~~v~~~~-~~~v~~Itlnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 108 (399)
|...+.++. +++|++|||||| ++.|+||.+|+.+|.++++.++.|+++++|||+|.+ ++||+|+|++++.... .
T Consensus 3 ~~~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~---~ 79 (708)
T PRK11154 3 MASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACK---T 79 (708)
T ss_pred CCceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccC---C
Confidence 344677787 689999999999 689999999999999999999999999999999875 8999999999875321 1
Q ss_pred hHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCc--eEEeccccccCccCCCchhHHHhhcc
Q 015820 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLP 186 (399)
Q Consensus 109 ~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~~ 186 (399)
......+....+.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~v 159 (708)
T PRK11154 80 AQEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLI 159 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhc
Confidence 2223334455677888999999999999999999999999999999999996 59999999999999999999999999
Q ss_pred hHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHh
Q 015820 187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK 265 (399)
Q Consensus 187 g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (399)
|.. |++|++||++++|+||+++||||++++++++.+...++++........+. ... .
T Consensus 160 G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~----------------~~~------~ 217 (708)
T PRK11154 160 GVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLP----------------VRE------R 217 (708)
T ss_pred CHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCC----------------chh------h
Confidence 999 99999999999999999999999999998887655555432100000000 000 0
Q ss_pred hcCCCCH--HHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCc
Q 015820 266 CFGLDTV--EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD 343 (399)
Q Consensus 266 ~f~~~~~--~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d 343 (399)
..+.+.. ..++ +++.+.+++-.+....|+..+|++++.+...++++++..|.+.+..++. ++|
T Consensus 218 ~~~~~p~~~~~~~------------~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~ 282 (708)
T PRK11154 218 LLEGNPLGRALLF------------KQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAM---TPE 282 (708)
T ss_pred hcccCchhHHHHH------------HHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHH
Confidence 0000000 1111 1111122222333346899999999999888999999999999999887 999
Q ss_pred HHhhHhhhhccC
Q 015820 344 FYEGVRARMVDR 355 (399)
Q Consensus 344 ~~egv~afl~ek 355 (399)
+++|+++|+.++
T Consensus 283 ~~~~~~aF~~~~ 294 (708)
T PRK11154 283 SAALRSIFFATT 294 (708)
T ss_pred HHHHHHHHHHHH
Confidence 999999999654
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=5e-42 Score=366.14 Aligned_cols=275 Identities=19% Similarity=0.212 Sum_probs=218.0
Q ss_pred EeeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-ecCCCCcccCCChhhHHHhhccCChHHHHHHH
Q 015820 39 EGKANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSM-KGSGRAFCAGGDIVSLYHFMNQGKLEECKDFF 116 (399)
Q Consensus 39 ~~~~~v~~Itlnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 116 (399)
+.+++|++|||||| ++.|+||.+|+.+|.++|+.++.|+++++||| +|.|++||+|+|++++... ........+.
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~---~~~~~~~~~~ 82 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC---QTAGEAKALA 82 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc---CChhHHHHHH
Confidence 45689999999999 68999999999999999999999999999986 6788999999999987531 1122333445
Q ss_pred HHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCc--eEEeccccccCccCCCchhHHHhhcchHH-HHHH
Q 015820 117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (399)
Q Consensus 117 ~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l 193 (399)
...+.++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|.. +++|
T Consensus 83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~l 162 (699)
T TIGR02440 83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDM 162 (699)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHH
Confidence 56677888999999999999999999999999999999999986 79999999999999999999999999999 9999
Q ss_pred HHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhc--CCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCC-
Q 015820 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLV--TDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD- 270 (399)
Q Consensus 194 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~- 270 (399)
++||+.++|++|+++||||+++|++++.+.+.++++.. ...+.... ...-+..
T Consensus 163 lltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~------------------------~~~~~~~~ 218 (699)
T TIGR02440 163 ILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQ------------------------ERLLEGTP 218 (699)
T ss_pred HHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccch------------------------hhhcccCc
Confidence 99999999999999999999999988876666654310 00000000 0000000
Q ss_pred -CHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHh
Q 015820 271 -TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR 349 (399)
Q Consensus 271 -~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~ 349 (399)
....+. +++.+.+++-.+....|...+|+.++.+...++++++..|.+.+..++. ++|.+++++
T Consensus 219 ~a~~~~~------------~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~~~ 283 (699)
T TIGR02440 219 LGRALLF------------DQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVM---TPESAALRS 283 (699)
T ss_pred hhHHHHH------------HHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 000010 1111222222343456777789999999999999999999999999987 999999999
Q ss_pred hhhccC
Q 015820 350 ARMVDR 355 (399)
Q Consensus 350 afl~ek 355 (399)
+|+.++
T Consensus 284 ~f~~~~ 289 (699)
T TIGR02440 284 IFFATT 289 (699)
T ss_pred HHHHHH
Confidence 999654
No 83
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=3.6e-41 Score=359.66 Aligned_cols=288 Identities=16% Similarity=0.197 Sum_probs=222.7
Q ss_pred cEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 015820 35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113 (399)
Q Consensus 35 ~v~~~~-~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 113 (399)
.+.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~ 85 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFA-LPDAELI 85 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhccc-CCHHHHH
Confidence 567774 78999999999999999999999999999999999999999999999999999999999853211 1122334
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHH
Q 015820 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 192 (399)
Q Consensus 114 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~ 192 (399)
.+....++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |.+
T Consensus 86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 4555677888999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCH
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 272 (399)
|++||++++|++|+++||||++++++++.+.+.+++........ ........+. .... .+.+..+++.
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~------~~~~~~~~~~-~~~~--~~~~~~~~~~--- 233 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKL------DWKAKRQPKL-EPLK--LSKIEAMMSF--- 233 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCC------cccccCCCCc-cccc--ccchHHHHHH---
Confidence 99999999999999999999999988887655555422100000 0000000000 0000 0001111110
Q ss_pred HHHHHHHHhhhccCCchHHHH-HHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh
Q 015820 273 EEIIDSLESEASLINDPWCGS-TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR 351 (399)
Q Consensus 273 ~ei~~~l~~~~~~~~~~~a~~-~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af 351 (399)
+++.+ ..++..+..|...+ ..+.+..+...++++++..|.+.|.+++. |++.+..++.|
T Consensus 234 ----------------~~~~~~~~~~~~~~~pap~~-~~~~v~~~~~~~~~~gl~~E~~~f~~l~~---s~~a~~l~~~f 293 (714)
T TIGR02437 234 ----------------TTAKGMVAQVAGPHYPAPMT-AVKTIEKAARFGRDKALEIEAKGFVKLAK---TSEAKALIGLF 293 (714)
T ss_pred ----------------HHHHHHHHHhhcCCCCCHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 11112 33444555555555 46788888888999999999999999998 99999999999
Q ss_pred hccC
Q 015820 352 MVDR 355 (399)
Q Consensus 352 l~ek 355 (399)
+.++
T Consensus 294 f~~r 297 (714)
T TIGR02437 294 LNDQ 297 (714)
T ss_pred hhhH
Confidence 9654
No 84
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=5.3e-41 Score=294.47 Aligned_cols=254 Identities=19% Similarity=0.268 Sum_probs=226.6
Q ss_pred cEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 015820 35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (399)
Q Consensus 35 ~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (399)
-..++.+++|..|+||+|+|+|.|+.+|+.+|.+.|....++.++|+|||+..|+.||+|.||+++.. ++..+....
T Consensus 33 ~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~---e~g~d~hae 109 (287)
T KOG1682|consen 33 LGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTN---EPGSDIHAE 109 (287)
T ss_pred ccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhc---CccchHHHH
Confidence 44566679999999999999999999999999999998888889999999999999999999999875 334566778
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHH
Q 015820 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 193 (399)
Q Consensus 115 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l 193 (399)
.++..-+++..|+++|+||||.|||+|..+|+.|+..||++||+++++|..|...+|+++...|.. |.|.+++. +.+|
T Consensus 110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA-laRavpRkva~~M 188 (287)
T KOG1682|consen 110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA-LARAVPRKVAAYM 188 (287)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh-HhhhcchhHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999988766654 88989988 9999
Q ss_pred HHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhhcCCCCHH
Q 015820 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273 (399)
Q Consensus 194 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 273 (399)
++||.+|+++||+..|||+++||+++++...+
T Consensus 189 L~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~------------------------------------------------ 220 (287)
T KOG1682|consen 189 LMTGLPITGEEALISGLVSKVVPAEELDKEIE------------------------------------------------ 220 (287)
T ss_pred HHhCCCCchHHHHHhhhhhhcCCHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999988863222
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhhhc
Q 015820 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMV 353 (399)
Q Consensus 274 ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~afl~ 353 (399)
+++..|...|...+.+.|+.+......+-.+++....+....-+. -.|.+|||.+|+
T Consensus 221 -------------------~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~q---l~d~kegiasf~- 277 (287)
T KOG1682|consen 221 -------------------EITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQ---LGDTKEGIASFF- 277 (287)
T ss_pred -------------------HHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc---ccchHHHHHHHh-
Confidence 236788888888889999999988888888888888888777665 799999999999
Q ss_pred cCCCCCCCCCC
Q 015820 354 DRDIAPKWSPP 364 (399)
Q Consensus 354 ek~r~p~~~~~ 364 (399)
+| |+|+|+|.
T Consensus 278 ~k-rp~~~~h~ 287 (287)
T KOG1682|consen 278 EK-RPPNWKHQ 287 (287)
T ss_pred cc-CCCCcCCC
Confidence 99 99999973
No 85
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-41 Score=305.75 Aligned_cols=252 Identities=21% Similarity=0.296 Sum_probs=225.4
Q ss_pred CCCcEEEEeeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 015820 32 LCNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE 110 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itln-rp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 110 (399)
.+..+.+++.+++.+|.+| ||+|.|+++.+|+.++..+|+.+..|+++..++++|.|++||+|.|+..+..........
T Consensus 5 ~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~ 84 (266)
T KOG0016|consen 5 RYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANE 84 (266)
T ss_pred cccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccc
Confidence 3568899999999999999 999999999999999999999999999999999999999999999999887654322222
Q ss_pred ---HHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcch
Q 015820 111 ---ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187 (399)
Q Consensus 111 ---~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g 187 (399)
....+...+..+...+..+|||+||+|||+|+|.|+.+...||+|+|+|+++|..|+.++|..|++|+++.+|+++|
T Consensus 85 ~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG 164 (266)
T KOG0016|consen 85 ESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMG 164 (266)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhc
Confidence 22233444556888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHhh
Q 015820 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC 266 (399)
Q Consensus 188 ~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (399)
.. |.+|++.|++++|+||.+.|||+++++.+++.+. .+
T Consensus 165 ~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~--v~--------------------------------------- 203 (266)
T KOG0016|consen 165 SASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEE--VL--------------------------------------- 203 (266)
T ss_pred hhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHH--HH---------------------------------------
Confidence 99 9999999999999999999999999999777531 11
Q ss_pred cCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHh
Q 015820 267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 346 (399)
Q Consensus 267 f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~e 346 (399)
..++++++.+|.+++..|++++......+..+.+.|.......|. ++|+.+
T Consensus 204 --------------------------~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~---s~e~~~ 254 (266)
T KOG0016|consen 204 --------------------------KKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWV---SAECLA 254 (266)
T ss_pred --------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcc---ChHHHH
Confidence 227899999999999999999998888899999999999999997 999999
Q ss_pred hHhhhhc
Q 015820 347 GVRARMV 353 (399)
Q Consensus 347 gv~afl~ 353 (399)
.+.+|+.
T Consensus 255 ~~~~~~~ 261 (266)
T KOG0016|consen 255 RFKQYLS 261 (266)
T ss_pred HHHHHhc
Confidence 9999993
No 86
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=1.1e-40 Score=313.40 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=156.6
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 015820 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG-FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114 (399)
Q Consensus 36 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 114 (399)
+.++.+++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++... .........
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~ 78 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL 78 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence 5678889999999999985 9999999999999999999998865 77889999999999999986421 111222233
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEe-CceEEeccccccCccCCCchhHHHhhcchHH-H-H
Q 015820 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G-E 191 (399)
Q Consensus 115 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a-~ 191 (399)
+...+++++..+.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++.+|++++|.. + +
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence 44556778889999999999999999999999999999999998 5689999999999974444578999999987 7 6
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCC-CChh
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVS-EKLP 221 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~ 221 (399)
+|++||++++|+||+++||||+++++ +++.
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~ 189 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETV 189 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHHH
Confidence 99999999999999999999999985 4554
No 87
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=3.5e-40 Score=352.89 Aligned_cols=292 Identities=18% Similarity=0.217 Sum_probs=216.8
Q ss_pred CCCcEEEEeeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEecCCCCcccCCChhhHHHhhccCCh
Q 015820 32 LCNQVLVEGKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFV-SMKGSGRAFCAGGDIVSLYHFMNQGKL 109 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~v-Vltg~g~~F~aG~Dl~~~~~~~~~~~~ 109 (399)
.++.+.++.+++|++||||||+ +.|+||.+|+.+|.++++.++.|+++++| |+||.|++||+|+|++++... ...
T Consensus 11 ~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~---~~~ 87 (737)
T TIGR02441 11 ARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAAC---KTA 87 (737)
T ss_pred CCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhcc---CCh
Confidence 3457889999999999999998 68999999999999999999999999965 679999999999999998631 122
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCc--eEEeccccccCccCCCchhHHHhhcch
Q 015820 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPG 187 (399)
Q Consensus 110 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~~g 187 (399)
.....+....++++..+.++||||||+|||+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|+|++|
T Consensus 88 ~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 88 QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 334455566778899999999999999999999999999999999999997 589999999999999999999999999
Q ss_pred HH-HHHHHHcCCCCCHHHHHHcCccceecCC--CC-----------hhHHHHHHhhhcCCChHHHHHHHHHhccccCCCc
Q 015820 188 HL-GEFLALTGAKLNGAEMMACGLATHYSVS--EK-----------LPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK 253 (399)
Q Consensus 188 ~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~--~~-----------l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (399)
.. |++|++||++++|+||+++||||+|+++ ++ +.+.+.++.+..... +...+.+.....+.
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~----~~~~~~~~~~~~~~- 242 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG----KLSINRDKGLVHKI- 242 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcc----cCCccccccccCcc-
Confidence 98 9999999999999999999999999986 22 222222221110000 00000000000000
Q ss_pred chhhhHHHHHHhhcCC-CCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 015820 254 NSVIHRIDIVDKCFGL-DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS 332 (399)
Q Consensus 254 ~~~~~~~~~i~~~f~~-~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~ 332 (399)
.. .-.+. .....+++.. ...+.++...+.|...+ +.+.+..+...++++++..|.+.|
T Consensus 243 ~~---------~~~~~~~~~~~~~~~~-----------~~~~~~~~~g~~~Ap~~-~l~~v~~~~~~~~~~gl~~E~~~f 301 (737)
T TIGR02441 243 TQ---------YVMTNPFVRQQVYKTA-----------EDKVMKQTKGLYPAPLK-ILDVVRTGYDQGPDAGYEAESKAF 301 (737)
T ss_pred ch---------hhcccchhHHHHHHHH-----------HHHHHHhccCCCccHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 00 00000 0011111111 11223343333555555 577888888889999999999999
Q ss_pred HHhhccCCCCcHHhhHhhhhccC
Q 015820 333 LQGVSRLISGDFYEGVRARMVDR 355 (399)
Q Consensus 333 ~~~~~~~~s~d~~egv~afl~ek 355 (399)
.+++. |++.+.-++.|+.++
T Consensus 302 ~~l~~---s~~a~al~~~f~~~~ 321 (737)
T TIGR02441 302 GELSM---TFESKALIGLFHGQT 321 (737)
T ss_pred HHHhC---CHHHHHHHHHHHHHH
Confidence 99998 999999999999764
No 88
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-41 Score=298.98 Aligned_cols=257 Identities=19% Similarity=0.295 Sum_probs=208.3
Q ss_pred cCCCcEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC--C-CCcccCCChhhHHHhhcc
Q 015820 31 DLCNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--G-RAFCAGGDIVSLYHFMNQ 106 (399)
Q Consensus 31 ~~~~~v~~~~~-~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~--g-~~F~aG~Dl~~~~~~~~~ 106 (399)
..++.|.+++. ++++.||||||+++|++.+..+.||.++|..++.|++|.+|||||. | .+||+|+|-+-.+....-
T Consensus 15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY 94 (282)
T COG0447 15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY 94 (282)
T ss_pred CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence 35789999998 9999999999999999999999999999999999999999999985 5 799999998755431100
Q ss_pred CChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcc
Q 015820 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186 (399)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~ 186 (399)
.+.+...++ ...++-+.|+.+||||||.|+|+|+|||-.|-+.||+.||+++|.|+....++|-+-++.++.+|.|.+
T Consensus 95 ~~d~~~~rL--nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 95 VDDDGIPRL--NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred cCCccCccc--chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 011111111 123455567899999999999999999999999999999999999999999999998888889999999
Q ss_pred hHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCChHHHHHHHHHhccccCCCcchhhhHHHHHHh
Q 015820 187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK 265 (399)
Q Consensus 187 g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (399)
|.. |+++.+.++.++|+||++||+||.|||-++|++...
T Consensus 173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v---------------------------------------- 212 (282)
T COG0447 173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETV---------------------------------------- 212 (282)
T ss_pred hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHH----------------------------------------
Confidence 999 999999999999999999999999999988864222
Q ss_pred hcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHH
Q 015820 266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY 345 (399)
Q Consensus 266 ~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~ 345 (399)
+| ++.|.++||.|++..|.+++...+. ..+++. ..--+.++ -+-+++.+
T Consensus 213 -----------------------~W----~~E~l~kSP~AlR~LK~Afnad~DG--laG~q~-~ag~at~L-~YmTdEa~ 261 (282)
T COG0447 213 -----------------------QW----AREMLAKSPTALRMLKAAFNADCDG--LAGLQE-LAGNATLL-YYMTDEAQ 261 (282)
T ss_pred -----------------------HH----HHHHHhcChHHHHHHHHHhcCCCch--hhHHHH-hcccceEE-EEechhhh
Confidence 33 7889999999999999999864331 122221 11111111 13489999
Q ss_pred hhHhhhhccCCCCCCCC
Q 015820 346 EGVRARMVDRDIAPKWS 362 (399)
Q Consensus 346 egv~afl~ek~r~p~~~ 362 (399)
||-.||+ || |+|+|+
T Consensus 262 EGr~AF~-eK-R~Pdf~ 276 (282)
T COG0447 262 EGRDAFL-EK-RKPDFS 276 (282)
T ss_pred hhHHHHh-hc-cCCChH
Confidence 9999999 99 999997
No 89
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=3.1e-38 Score=287.49 Aligned_cols=190 Identities=33% Similarity=0.513 Sum_probs=173.5
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 015820 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (399)
Q Consensus 36 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (399)
+.++.+++|++|+||+|++.|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++...... .+....+
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~--~~~~~~~ 78 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDA--GEEARAF 78 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccccc--chhHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999998753211 1135677
Q ss_pred HHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHH-HHHHH
Q 015820 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 194 (399)
Q Consensus 116 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~-a~~l~ 194 (399)
...++.++..+..++|||||+|||+|+|+|++++++||+||++++++|++||+++|++|++|++++|++++|.. +.+++
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred HcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 015820 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (399)
Q Consensus 195 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l 227 (399)
++|+.++++||+++|||+++++.+++.+...++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~ 191 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALEL 191 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHH
Confidence 999999999999999999999997776544444
No 90
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=6.4e-38 Score=322.69 Aligned_cols=197 Identities=14% Similarity=0.158 Sum_probs=165.2
Q ss_pred ccCCCcEEEEeeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEecC-CCCcccCCCh
Q 015820 30 DDLCNQVLVEGKANSRMAILNRPS----------ALNALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGS-GRAFCAGGDI 97 (399)
Q Consensus 30 ~~~~~~v~~~~~~~v~~Itlnrp~----------~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~-g~~F~aG~Dl 97 (399)
+..++.+.++++++|++||||||+ |.|+||.+|+.+|.++|+.++ .|+++|+|||||. |++||+|+|+
T Consensus 7 ~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL 86 (546)
T TIGR03222 7 PSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI 86 (546)
T ss_pred CCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence 344678999999999999999975 899999999999999999999 7899999999997 5899999999
Q ss_pred hhHHHhhccCChHHHHHHH-HHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCc--eEEeccccc-cCcc
Q 015820 98 VSLYHFMNQGKLEECKDFF-RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGFH 173 (399)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~--a~f~~pe~~-~Gl~ 173 (399)
+++....... ......+. .....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++
T Consensus 87 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~ 165 (546)
T TIGR03222 87 FMLGLSTHAW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVL 165 (546)
T ss_pred HHHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcC
Confidence 9875311100 01111111 11233555677899999999999999999999999999999986 799999997 9999
Q ss_pred CCCchhHHHh--hcchHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 015820 174 PDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (399)
Q Consensus 174 p~~g~~~~L~--r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l 227 (399)
|++|+..+++ +.+|.. |++|++||+.++|+||+++||||++||++++++...++
T Consensus 166 P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~l 222 (546)
T TIGR03222 166 PGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAER 222 (546)
T ss_pred CccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHH
Confidence 9999999997 689998 99999999999999999999999999988776544433
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1e-36 Score=314.75 Aligned_cols=195 Identities=14% Similarity=0.172 Sum_probs=163.3
Q ss_pred cCCCcEEEEeeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEecCC-CCcccCCChh
Q 015820 31 DLCNQVLVEGKANSRMAILNRP-------S---ALNALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGSG-RAFCAGGDIV 98 (399)
Q Consensus 31 ~~~~~v~~~~~~~v~~Itlnrp-------~---~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~g-~~F~aG~Dl~ 98 (399)
..++.+.++.+++|++|||||| + +.|+||.+|+.+|.++++.++ .++++++|||||.+ ++||+|+|++
T Consensus 12 ~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~ 91 (550)
T PRK08184 12 SQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIF 91 (550)
T ss_pred CCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHH
Confidence 4567899999999999999965 4 899999999999999999999 78999999999985 8999999999
Q ss_pred hHHHhhccCChHHHHHHHHH-HHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCc--eEEeccccc-cCccC
Q 015820 99 SLYHFMNQGKLEECKDFFRT-LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGFHP 174 (399)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~--a~f~~pe~~-~Gl~p 174 (399)
.+....... ......+... ...+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++|
T Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P 170 (550)
T PRK08184 92 MLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLP 170 (550)
T ss_pred hHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCC
Confidence 875321100 0111111111 122445677899999999999999999999999999999987 899999997 99999
Q ss_pred CCchhHHHh--hcchHH-HHHHHHcCCCCCHHHHHHcCccceecCCCChhHHHHH
Q 015820 175 DAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 226 (399)
Q Consensus 175 ~~g~~~~L~--r~~g~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~ 226 (399)
++|++++|+ +++|.. +.+|++||+.++|+||+++||||++|+++++.+...+
T Consensus 171 ~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~ 225 (550)
T PRK08184 171 GTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAE 225 (550)
T ss_pred CcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHH
Confidence 999999998 779998 9999999999999999999999999998877654333
No 92
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.86 E-value=2.3e-21 Score=162.12 Aligned_cols=115 Identities=47% Similarity=0.861 Sum_probs=98.9
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhc
Q 015820 258 HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS 337 (399)
Q Consensus 258 ~~~~~i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~ 337 (399)
.....|++||+.+++++|+++|+. ...+|+.++++.|.++||.|+++|.++++++...++.++++.|+++..+++.
T Consensus 4 ~~~~~I~~~F~~~s~~eI~~~L~~----~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~ 79 (118)
T PF13766_consen 4 EHLEAIDRCFSADSVEEIIEALEA----DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMR 79 (118)
T ss_dssp HCHHHHHHHTTSSSHHHHHHHHHH----HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHc----cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc
Confidence 346789999999999999999998 4679999999999999999999999999999999999999999999999987
Q ss_pred cCCCCcHHhhHhhhhccCCCCCCCCCCCccCCCHHHHhcccC
Q 015820 338 RLISGDFYEGVRARMVDRDIAPKWSPPSLEQVSEDMVDRYFS 379 (399)
Q Consensus 338 ~~~s~d~~egv~afl~ek~r~p~~~~~~~~~v~~~~v~~~~~ 379 (399)
.+||.|||+|.||+|++.|+|+|+++++|++++|+++|+
T Consensus 80 ---~~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 80 ---HPDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp ---CSCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred ---cchHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 899999999999999999999999999999999999995
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.77 E-value=5.5e-19 Score=158.76 Aligned_cols=141 Identities=16% Similarity=0.105 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcce
Q 015820 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (399)
Q Consensus 61 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~ 140 (399)
-.+.+|.++++.+..|+++++|||++ +|.|+|+.... .+.+++..+..++|||||+++|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G~ 81 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGGN 81 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECCc
Confidence 35689999999999999999999997 68898876421 23345666778999999999999
Q ss_pred eecccccccccCCeEEEeCceEEeccccccCccCCCchhH--------HHhhcch--HH-HHHHHHcCCCCCHHHHHHcC
Q 015820 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF--------YLSHLPG--HL-GEFLALTGAKLNGAEMMACG 209 (399)
Q Consensus 141 a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~--------~L~r~~g--~~-a~~l~ltG~~i~A~eA~~~G 209 (399)
|.|+|+.|+++||+++++++++|+++.+..+..+...... .+++..| .. ..+++..|..++|++|++.|
T Consensus 82 a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~G 161 (177)
T cd07014 82 AASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANG 161 (177)
T ss_pred hhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcC
Confidence 9999999999999999999999999977766433222222 3444445 55 78889999999999999999
Q ss_pred ccceecCCCChh
Q 015820 210 LATHYSVSEKLP 221 (399)
Q Consensus 210 Lv~~vv~~~~l~ 221 (399)
|||++.+.+++.
T Consensus 162 LVD~v~~~~e~~ 173 (177)
T cd07014 162 LVDSLGSFDDAV 173 (177)
T ss_pred CcccCCCHHHHH
Confidence 999999876553
No 94
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.76 E-value=4.1e-18 Score=154.47 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=114.1
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe-cCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 015820 45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMK-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (399)
Q Consensus 45 ~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (399)
++|.++. .++..+...+...|+.+..++ ++.|+|. . |-|+++..- ..++
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v~~~-------------------~~i~ 51 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD-----TPGGLLDST-------------------REIV 51 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCHHHH-------------------HHHH
Confidence 4566653 356677788999999998665 7777776 4 344554421 1244
Q ss_pred HHHccCCCcEEEEEc---ceeecccccccccCCeEEEeCceEEeccccccCccCCC--------------chhHHHhhcc
Q 015820 124 YLLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDA--------------GASFYLSHLP 186 (399)
Q Consensus 124 ~~i~~~~kP~IAav~---G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~--------------g~~~~L~r~~ 186 (399)
..+..+||||||+|+ |+|.|||+.|+++||+++++++++|+++++..|..+.. +....+++..
T Consensus 52 ~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (187)
T cd07020 52 QAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELR 131 (187)
T ss_pred HHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 556679999999999 99999999999999999999999999999986654433 2455788888
Q ss_pred hH--H-HHHHHHcCCCCCHHHHHHcCccceecCCC
Q 015820 187 GH--L-GEFLALTGAKLNGAEMMACGLATHYSVSE 218 (399)
Q Consensus 187 g~--~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~ 218 (399)
|. . +.+++++|+.++|+||+++||||+++++.
T Consensus 132 G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 132 GRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred CCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 87 5 89999999999999999999999999885
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.59 E-value=2.5e-15 Score=138.77 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=82.2
Q ss_pred CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHH
Q 015820 43 NSRMAILNRP--SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY 120 (399)
Q Consensus 43 ~v~~Itlnrp--~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 120 (399)
+|++|.++.| +..+..+..++.+|.++|+.+..|+++++|||+ .||.|+|+..+.. +.
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~----------------~~ 60 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV----------------IR 60 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH----------------HH
Confidence 3556665543 122333455689999999999999999999998 7999999976431 22
Q ss_pred HHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEec
Q 015820 121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165 (399)
Q Consensus 121 ~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~ 165 (399)
+.+..+..++|||||+++|.|.|+|+.|+++||++++++.+.|+.
T Consensus 61 ~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs 105 (211)
T cd07019 61 AELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS 105 (211)
T ss_pred HHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence 345667788999999999999999999999999999999988863
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.50 E-value=1.1e-13 Score=122.33 Aligned_cols=134 Identities=14% Similarity=0.146 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEE
Q 015820 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (399)
Q Consensus 58 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 137 (399)
++..++.+|.+.|+.++.|+++++|+|.. .|.|+|+... ..+...+..++|||||.+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~ 64 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-------------------MNIVDALQASRKPVIAYV 64 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence 55688899999999999999999999976 4677766532 124445667789999999
Q ss_pred cceeecccccccccCCeEEEeCceEEeccccccCccCCCchh------HHH----hhc---------chHH-HHHHHHcC
Q 015820 138 NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS------FYL----SHL---------PGHL-GEFLALTG 197 (399)
Q Consensus 138 ~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~------~~L----~r~---------~g~~-a~~l~ltG 197 (399)
+|.|.++|+.|+++||.|++.+++.|++..+..+.....+-. ..+ .+. .... ..+++..|
T Consensus 65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~ 144 (161)
T cd00394 65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD 144 (161)
T ss_pred CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence 999999999999999999999999999988876554322000 011 111 1222 45677789
Q ss_pred CCCCHHHHHHcCcccee
Q 015820 198 AKLNGAEMMACGLATHY 214 (399)
Q Consensus 198 ~~i~A~eA~~~GLv~~v 214 (399)
..++|+||+++||||++
T Consensus 145 ~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 145 LVLTAQEALEYGLVDAL 161 (161)
T ss_pred cEEcHHHHHHcCCcCcC
Confidence 99999999999999975
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.46 E-value=4.6e-13 Score=123.96 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=73.7
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccC
Q 015820 51 RPSALNA-LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH 129 (399)
Q Consensus 51 rp~~~Na-l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 129 (399)
++...|+ ++..++.+|.++|+.+..|+++++|||+. +|.|+++... ..+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~~~l~~~~~- 72 (214)
T cd07022 14 RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELADAIRAARA- 72 (214)
T ss_pred CCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHHHHHHHHhc-
Confidence 4444454 45689999999999999999999999975 4667665432 112223333444
Q ss_pred CCcEEEEEcceeecccccccccCCeEEEeCceEEecc
Q 015820 130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166 (399)
Q Consensus 130 ~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~p 166 (399)
+|||||+++|.|.|+|+.|+++||++++++++.|+..
T Consensus 73 ~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i 109 (214)
T cd07022 73 GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI 109 (214)
T ss_pred CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence 6999999999999999999999999999999988654
No 98
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.41 E-value=6.2e-13 Score=117.48 Aligned_cols=128 Identities=14% Similarity=0.157 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcce
Q 015820 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (399)
Q Consensus 61 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~ 140 (399)
.+...+.+.|..+..++.+ .+.|.+.|+ ++.. ...+...+..++||||+.++|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG------~~~~-------------------~~~i~~~i~~~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGG------DVFA-------------------GLAIYNALKRHKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCC------CHHH-------------------HHHHHHHHHhcCCCEEEEEcch
Confidence 4667888888888877444 444555443 3321 1235566777899999999999
Q ss_pred eecccccccccCCeEEEeCceEEeccccccCccCCCc---------------hhHHHhhcch--HH-HHHHHHcCCCCCH
Q 015820 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAG---------------ASFYLSHLPG--HL-GEFLALTGAKLNG 202 (399)
Q Consensus 141 a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g---------------~~~~L~r~~g--~~-a~~l~ltG~~i~A 202 (399)
|.|+|+.++++||+|++++++.|+++....|..+... ....+.+..| .. ...++..+..++|
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 9999999999999999999999999887766544332 1233666677 45 6777777788999
Q ss_pred HHHHHcCcccee
Q 015820 203 AEMMACGLATHY 214 (399)
Q Consensus 203 ~eA~~~GLv~~v 214 (399)
+||+++||||+|
T Consensus 149 ~eA~~~GliD~v 160 (160)
T cd07016 149 QEAVELGFADEI 160 (160)
T ss_pred HHHHHcCCCCcC
Confidence 999999999985
No 99
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.38 E-value=2.6e-12 Score=118.46 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=106.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (399)
|++|.++.+=... ...++.+|.++|+.+..|+++++|||++ +|.|+|+.... .+.+.+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~----------------~i~~~i 59 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE----------------EIYREI 59 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH----------------HHHHHH
Confidence 5666676541000 3678999999999999999999999998 47898886421 123355
Q ss_pred HHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccc------------cCccCCCc--------------
Q 015820 124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPDAG-------------- 177 (399)
Q Consensus 124 ~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~------------~Gl~p~~g-------------- 177 (399)
..+..++|||||+++|.|.|+|+.|+++||.+++++.+.|+...+. +|+-+..-
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~ 139 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP 139 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence 6677789999999999999999999999999999999988642211 23222110
Q ss_pred h----hHHHhhcch-----------------HHHHHHHHcCCCCCHHHHHHcCccceecCCC
Q 015820 178 A----SFYLSHLPG-----------------HLGEFLALTGAKLNGAEMMACGLATHYSVSE 218 (399)
Q Consensus 178 ~----~~~L~r~~g-----------------~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~ 218 (399)
+ ...+...+. .....-++.|..+++++|++.||||++...+
T Consensus 140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~ 201 (208)
T cd07023 140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLD 201 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHH
Confidence 0 011111111 1112235688899999999999999997643
No 100
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.33 E-value=5.2e-12 Score=132.84 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=114.5
Q ss_pred eeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHH
Q 015820 40 GKANSRMAILNRPS--ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR 117 (399)
Q Consensus 40 ~~~~v~~Itlnrp~--~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 117 (399)
.++.|++|+++++= ..+..+....+.+.+.|+.+..|++|++|||+-. |.|++.... +
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as---------e------- 365 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS---------E------- 365 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH---------H-------
Confidence 46789999998753 2343343445678889999999999999999965 223322210 1
Q ss_pred HHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEE------eccc------cccCccCCCchhHHHhh-
Q 015820 118 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF------ATPE------TLIGFHPDAGASFYLSH- 184 (399)
Q Consensus 118 ~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f------~~pe------~~~Gl~p~~g~~~~L~r- 184 (399)
.+++.+..+...+|||||.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.|+...+..+..
T Consensus 366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 1122334455678999999999999999999999999999999876 5553 57898887665544332
Q ss_pred ---------------------------cc------hHHHHHHHHcCCCCCHHHHHHcCccceecC
Q 015820 185 ---------------------------LP------GHLGEFLALTGAKLNGAEMMACGLATHYSV 216 (399)
Q Consensus 185 ---------------------------~~------g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~ 216 (399)
.+ ...+.+.+.+|+.+++++|+++||||++..
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG 510 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC
Confidence 22 222567788999999999999999999953
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.31 E-value=1.3e-11 Score=113.71 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=101.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (399)
|++|+++.+= + ....+|.++|+.+..|+++++|||++. |.|+++... ..+.
T Consensus 2 v~vi~i~g~i-----~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------------~~l~ 52 (207)
T TIGR00706 2 IAILPVSGAI-----A-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------------EEIY 52 (207)
T ss_pred EEEEEEEEEE-----e-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------------HHHH
Confidence 5666666542 1 235788999999999999999999975 777777532 1233
Q ss_pred HHHccCC--CcEEEEEcceeecccccccccCCeEEEeCceEEeccccc------------cCccCC------------C-
Q 015820 124 YLLGTHL--KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD------------A- 176 (399)
Q Consensus 124 ~~i~~~~--kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~------------~Gl~p~------------~- 176 (399)
..+..++ |||||+++|.|.|+|+.|+++||.+++++++.++...+. +|+-+. .
T Consensus 53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~ 132 (207)
T TIGR00706 53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT 132 (207)
T ss_pred HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence 3444455 999999999999999999999999999999887653332 233110 0
Q ss_pred -chh----HHHh-----------------hcchHHHHHHHHcCCCCCHHHHHHcCccceecCCCCh
Q 015820 177 -GAS----FYLS-----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (399)
Q Consensus 177 -g~~----~~L~-----------------r~~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 220 (399)
..+ ..+. |-+.....+=++.|+.+++++|++.||||++...+++
T Consensus 133 ~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~ 198 (207)
T TIGR00706 133 RELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDA 198 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHH
Confidence 000 1111 1111121223468999999999999999999876554
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.22 E-value=8.2e-11 Score=105.60 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHH
Q 015820 45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124 (399)
Q Consensus 45 ~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (399)
.+|.++. .+++.+...|.+.|+.+..++ +..|+|.=. |.|+++.. ...+..
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~-------------------~~~I~~ 52 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS-------------------ALEIVD 52 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH-------------------HHHHHH
Confidence 4566644 366778888999999998886 666666532 34454443 223566
Q ss_pred HHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCch--------hHH------HhhcchHH-
Q 015820 125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA--------SFY------LSHLPGHL- 189 (399)
Q Consensus 125 ~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~--------~~~------L~r~~g~~- 189 (399)
.+..+++|||+.|+|.|.|+|+.++++||++++++++.|+.+++ ++..|+ ... +...-|+.
T Consensus 53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~----v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~ 128 (178)
T cd07021 53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP----IPGDGNGAADEKVQSYWRAKMRAAAEKKGRDP 128 (178)
T ss_pred HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee----EcCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence 67789999999999999999999999999999999999998844 333333 111 22222332
Q ss_pred --HHHHHHcC-------------CCCCHHHHHHcCccceecCC
Q 015820 190 --GEFLALTG-------------AKLNGAEMMACGLATHYSVS 217 (399)
Q Consensus 190 --a~~l~ltG-------------~~i~A~eA~~~GLv~~vv~~ 217 (399)
+..|+--. -.++++||++.|++|.+.++
T Consensus 129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 44554443 26999999999999999875
No 103
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.15 E-value=1.7e-10 Score=107.48 Aligned_cols=142 Identities=13% Similarity=0.015 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEE
Q 015820 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (399)
Q Consensus 58 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 137 (399)
-+..++.+|.+.|+++..|++|++|||+..+..| ++.++.++ .+.+..+...+|||||.+
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------------~~~i~~~~~~~kpVia~~ 85 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------------RQALERFRASGKPVIAYA 85 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------HHHHHHHHHhCCeEEEEe
Confidence 3457788999999999999999999999987666 55555544 223444555799999999
Q ss_pred cceeecccccccccCCeEEEeCceEEeccccc------------cCccCC---------CchhH-----------HHhhc
Q 015820 138 NGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD---------AGASF-----------YLSHL 185 (399)
Q Consensus 138 ~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~------------~Gl~p~---------~g~~~-----------~L~r~ 185 (399)
+| |.+||+.|+++||.+++.+.+.|+...+. +|+-+. .+..+ .+...
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~ 164 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQAL 164 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHH
Confidence 98 88999999999999999999999885332 222111 11111 00111
Q ss_pred -----------------chHHHHHHHHcCCCCCHHHHHHcCccceecCCCCh
Q 015820 186 -----------------PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (399)
Q Consensus 186 -----------------~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 220 (399)
+.....+-+..|..+++++|++.||||++...+++
T Consensus 165 l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~ 216 (222)
T cd07018 165 LDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDEL 216 (222)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHH
Confidence 11111223456999999999999999999865544
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.70 E-value=1.6e-07 Score=83.70 Aligned_cols=136 Identities=11% Similarity=0.205 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEE
Q 015820 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (399)
Q Consensus 58 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 137 (399)
+++.+...|.+.++.++.+ .++.|+|.=. |-|+.+... ..++..+...++||++.|
T Consensus 10 I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-------------------~~I~~~i~~~~~pvv~~v 65 (172)
T cd07015 10 ITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-------------------GNIVQRIQQSKIPVIIYV 65 (172)
T ss_pred ECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCcCEEEEE
Confidence 6677788889999988865 4676666533 445555431 124455667899999999
Q ss_pred c---ceeecccccccccCCeEEEeCceEEeccccccCccCC----Cch----hHH------HhhcchH--H-HHHHHHcC
Q 015820 138 N---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD----AGA----SFY------LSHLPGH--L-GEFLALTG 197 (399)
Q Consensus 138 ~---G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~----~g~----~~~------L~r~~g~--~-a~~l~ltG 197 (399)
+ |.|..+|.-++++||.+++.+++.++......|..+. ..- ... +.+.-|+ . +..++-..
T Consensus 66 ~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~ 145 (172)
T cd07015 66 YPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKD 145 (172)
T ss_pred ecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhh
Confidence 9 9999999999999999999999999988775443220 000 111 1122232 2 56777888
Q ss_pred CCCCHHHHHHcCccceecCC
Q 015820 198 AKLNGAEMMACGLATHYSVS 217 (399)
Q Consensus 198 ~~i~A~eA~~~GLv~~vv~~ 217 (399)
..++++||+++|++|.++.+
T Consensus 146 ~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 146 LSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred cCcCHHHHHHcCCceeeeCC
Confidence 89999999999999999986
No 105
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.55 E-value=5e-07 Score=82.76 Aligned_cols=133 Identities=16% Similarity=0.100 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEE--EEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEE
Q 015820 57 ALNTNMGAKLNKLFKAWENDPNIGFV--SMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (399)
Q Consensus 57 al~~~~~~eL~~~l~~~~~d~~v~~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 134 (399)
.++..+...+...|..++.++..+-| .|-+ .|+++.. ...++..+...+.|++
T Consensus 39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InS------pGG~v~~-------------------g~~I~d~i~~~~~~v~ 93 (200)
T PRK00277 39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYINS------PGGSVTA-------------------GLAIYDTMQFIKPDVS 93 (200)
T ss_pred EECHHHHHHHHHHHHHhhccCCCCCEEEEEEC------CCCcHHH-------------------HHHHHHHHHhcCCCEE
Confidence 36788899999998888765433222 3333 3444432 1224445666788999
Q ss_pred EEEcceeecccccccccCC--eEEEeCceEEeccccccCccCCCchh------------------HHHhhcchH--H-HH
Q 015820 135 AILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS------------------FYLSHLPGH--L-GE 191 (399)
Q Consensus 135 Aav~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe~~~Gl~p~~g~~------------------~~L~r~~g~--~-a~ 191 (399)
+.+.|.|.++|..|+++++ .|++.+++.+.+....-|. .|-. ..+...-|. . ..
T Consensus 94 t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~ 170 (200)
T PRK00277 94 TICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIE 170 (200)
T ss_pred EEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999988753 5777777777665443221 1111 112222332 2 44
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVS 217 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~ 217 (399)
.++-.+..++|+||++.||||+|+.+
T Consensus 171 ~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 171 KDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHhhCCccccHHHHHHcCCccEEeec
Confidence 55667788999999999999999975
No 106
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.54 E-value=6.7e-07 Score=79.17 Aligned_cols=132 Identities=13% Similarity=0.090 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEE
Q 015820 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (399)
Q Consensus 58 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 137 (399)
++..+..++...|..++.++..+.|+|.=. |.|+++.. ...++..+...++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------~~~i~~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-------------------GMAIYDTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCceEEE
Confidence 467888899999999998866665555432 34444432 1235555667889999999
Q ss_pred cceeecccccccccCC--eEEEeCceEEeccccccCccCCCchh--H---------------HHhhcchH--H-HHHHHH
Q 015820 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS--F---------------YLSHLPGH--L-GEFLAL 195 (399)
Q Consensus 138 ~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe~~~Gl~p~~g~~--~---------------~L~r~~g~--~-a~~l~l 195 (399)
.|.|.++|.-++++|| .|++.+++.|.+....-|.. +... . .+.+.-|. . ...++-
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~--g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 143 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTL--GDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE 143 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 9999999999999999 68888888887654332211 1111 0 11111222 2 345556
Q ss_pred cCCCCCHHHHHHcCcccee
Q 015820 196 TGAKLNGAEMMACGLATHY 214 (399)
Q Consensus 196 tG~~i~A~eA~~~GLv~~v 214 (399)
.+..++|+||+++||||++
T Consensus 144 ~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 144 RDTWLSAREAVEYGFADTI 162 (162)
T ss_pred CCccccHHHHHHcCCCCcC
Confidence 6667799999999999985
No 107
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.50 E-value=7.1e-08 Score=93.61 Aligned_cols=168 Identities=18% Similarity=0.026 Sum_probs=138.6
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHHHHHHHHHHH
Q 015820 43 NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS 121 (399)
Q Consensus 43 ~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 121 (399)
++..+.++ |+ .|..|.++..+|..-|+.++.+..+++.++|+.. +.|++|.|..+.... ........+.++++
T Consensus 66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg----~h~fspa~~m~LlE 139 (380)
T KOG1683|consen 66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVG----MHFFSPAHWMQLLE 139 (380)
T ss_pred ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcc----ccccCHHHHHHHHH
Confidence 67778887 55 6999999999999999999999999999999988 899999999987643 34445567788999
Q ss_pred HHHHHccCCCcEEEEEcceeeccc--ccccccCCeEEEeC--ceEEeccccccCc-cCCCchhHHHhhcchHH-HHHHHH
Q 015820 122 FIYLLGTHLKPHVAILNGVTMGGG--AGVSIPGTFRVACG--KTVFATPETLIGF-HPDAGASFYLSHLPGHL-GEFLAL 195 (399)
Q Consensus 122 l~~~i~~~~kP~IAav~G~a~GgG--~~Lal~cD~ria~~--~a~f~~pe~~~Gl-~p~~g~~~~L~r~~g~~-a~~l~l 195 (399)
++....+++.|+.+++||++--|| +-++.||+|++..- .-..+..+...|+ .|++- .-.+...+|.. +-.-+-
T Consensus 140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~-iD~~~t~fGf~~g~~~L~ 218 (380)
T KOG1683|consen 140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWL-IDSLITKFGFRVGERALA 218 (380)
T ss_pred HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHH-HHHHHHhcCccccHHHHh
Confidence 999999999999999999998888 89999999999974 3344778888884 44443 33344556766 666777
Q ss_pred cCCCCCHHHHHHcCccceecCC
Q 015820 196 TGAKLNGAEMMACGLATHYSVS 217 (399)
Q Consensus 196 tG~~i~A~eA~~~GLv~~vv~~ 217 (399)
-|.-++..||++-|+++.+.+.
T Consensus 219 d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 219 DGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred hccCccHHHHHhhccchhccch
Confidence 8899999999999999999985
No 108
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.43 E-value=2e-06 Score=79.12 Aligned_cols=137 Identities=14% Similarity=0.047 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEE
Q 015820 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136 (399)
Q Consensus 57 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa 136 (399)
.++..+..++...|..++..+..+.|+|.=. |.|+++..- ..++..+..++.|+++.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t~ 99 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-------------------DAIYDTIQFIRPDVQTV 99 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhcCCCcEEE
Confidence 3678999999999999987543333322211 344444421 12455566778899999
Q ss_pred EcceeecccccccccCC--eEEEeCceEEecccccc-CccCCCchh------------------HHHhhcchH--H-HHH
Q 015820 137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLI-GFHPDAGAS------------------FYLSHLPGH--L-GEF 192 (399)
Q Consensus 137 v~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe~~~-Gl~p~~g~~------------------~~L~r~~g~--~-a~~ 192 (399)
+.|.|.++|.-|+++|| .|++.+++.|.+..... |. ..|-. ..+...-|. . ...
T Consensus 100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~ 177 (207)
T PRK12553 100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRK 177 (207)
T ss_pred EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999 59999999999877653 21 12211 112222333 2 455
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCC
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSE 218 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~ 218 (399)
++-.+..++|+||+++||||+|+++.
T Consensus 178 ~~~~~~~lta~EA~e~GliD~I~~~~ 203 (207)
T PRK12553 178 DTDRDKWLTAEEAKDYGLVDQIITSY 203 (207)
T ss_pred HHhcCccccHHHHHHcCCccEEcCch
Confidence 66788999999999999999999753
No 109
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.33 E-value=2.5e-06 Score=76.21 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEE
Q 015820 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (399)
Q Consensus 58 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 137 (399)
++..+..++...|..+..++..+.|+|.=. |.|+|+..- ..++..+...+.|+++.+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-------------------~~i~~~l~~~~~~v~t~~ 74 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPPVSTIC 74 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 567888899999999887765444433221 344444321 124444556789999999
Q ss_pred cceeecccccccccCC--eEEEeCceEEeccccccCccCCCchhH-----------------HHhhcchH--H-HHHHHH
Q 015820 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASF-----------------YLSHLPGH--L-GEFLAL 195 (399)
Q Consensus 138 ~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~~g~--~-a~~l~l 195 (399)
.|.|.++|.-+++++| .|++.+++.|.+.+...|..-. ... .+....|. . ...++-
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 9999999999999999 8999999999998876543222 111 11111222 2 345566
Q ss_pred cCCCCCHHHHHHcCcccee
Q 015820 196 TGAKLNGAEMMACGLATHY 214 (399)
Q Consensus 196 tG~~i~A~eA~~~GLv~~v 214 (399)
.+..++|+||+++||||+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 7888999999999999986
No 110
>PRK10949 protease 4; Provisional
Probab=98.28 E-value=9.8e-06 Score=85.92 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=100.4
Q ss_pred eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 015820 41 KANSRMAILNRP-----SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115 (399)
Q Consensus 41 ~~~v~~Itlnrp-----~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 115 (399)
.+.|++|+++.+ .....++. +.+.+.|+++..|++|++|||+-. |-|+....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a---------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA---------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH----------------
Confidence 467888887642 22233444 457778899999999999999876 33333221
Q ss_pred HHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEecccc------------ccCccCCCchh----
Q 015820 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDAGAS---- 179 (399)
Q Consensus 116 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~------------~~Gl~p~~g~~---- 179 (399)
.+.+++.+..++...|||||.+.|.|.-||.-++++||.+++.+.+..|.-.+ ++|+-+....+
T Consensus 382 se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~ 461 (618)
T PRK10949 382 SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLA 461 (618)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccC
Confidence 11222333444567899999999999999999999999999999765443221 23332211100
Q ss_pred -------------HHHhhc-----------------chHHHHHHHHcCCCCCHHHHHHcCccceecCCCCh
Q 015820 180 -------------FYLSHL-----------------PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (399)
Q Consensus 180 -------------~~L~r~-----------------~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 220 (399)
..+... +.....+-+..|+.+++++|++.||||++-.-++.
T Consensus 462 ~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~a 532 (618)
T PRK10949 462 DVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDA 532 (618)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHH
Confidence 011111 11111223568999999999999999999765443
No 111
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.26 E-value=2.6e-05 Score=73.81 Aligned_cols=138 Identities=16% Similarity=0.092 Sum_probs=94.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEE
Q 015820 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (399)
Q Consensus 55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 134 (399)
.-+++++-.....+.++.+.+.. +-+|-|.-+++++. |.+-.. .-....+.+.+..+....+|+|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpGa~~-g~~aE~-------------~G~~~~ia~~~~~~s~~~VP~I 140 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAGAYP-GVGAEE-------------RGQGEAIARNLMEMSDLKVPII 140 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CHhHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 45677888888888888887653 55666655544442 322110 1123445556677788999999
Q ss_pred EEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchH-H-HHHHHHcCCCCCHHHHHHcCccc
Q 015820 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-L-GEFLALTGAKLNGAEMMACGLAT 212 (399)
Q Consensus 135 Aav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~-a~~l~ltG~~i~A~eA~~~GLv~ 212 (399)
+.|-|.|.|||......||++++.+++.++. .++-|.+..+.+--.. . +.+.+ .+++.++.+.|+||
T Consensus 141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD 209 (256)
T PRK12319 141 AIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVD 209 (256)
T ss_pred EEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCc
Confidence 9999999999888888999999999887763 3334444444432222 1 33333 77999999999999
Q ss_pred eecCCC
Q 015820 213 HYSVSE 218 (399)
Q Consensus 213 ~vv~~~ 218 (399)
+|++..
T Consensus 210 ~ii~e~ 215 (256)
T PRK12319 210 KVIPEH 215 (256)
T ss_pred EecCCC
Confidence 999864
No 112
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.26 E-value=3.3e-06 Score=76.08 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=92.2
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHhcC-CCce-EEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHH
Q 015820 47 AILNRPSALNALNTNMGAKLNKLFKAWEND-PNIG-FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124 (399)
Q Consensus 47 Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d-~~v~-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (399)
|.|+.| ++.++...+...|..++.. +.-. .|.|. |.|+|+..- ..++.
T Consensus 19 i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN------SpGG~v~~g-------------------~~i~~ 68 (182)
T PF00574_consen 19 IFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYIN------SPGGDVDAG-------------------LAIYD 68 (182)
T ss_dssp EEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE------ECEBCHHHH-------------------HHHHH
T ss_pred EEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEc------CCCCccHHH-------------------HHHHH
Confidence 455554 6889999999888777433 2222 23334 355555431 23556
Q ss_pred HHccCCCcEEEEEcceeecccccccccCCe--EEEeCceEEeccccccCccCCCchhH---------------HHhhcch
Q 015820 125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPG 187 (399)
Q Consensus 125 ~i~~~~kP~IAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~~g 187 (399)
.+..++.|+++.+.|.|.++|.-++++|+. |++.+++.|.+.+...+..-...... .+....|
T Consensus 69 ~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg 148 (182)
T PF00574_consen 69 AIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTG 148 (182)
T ss_dssp HHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 677889999999999999999999999999 89999999999888666533111110 0111112
Q ss_pred H--H-HHHHHHcCCCCCHHHHHHcCccceecCC
Q 015820 188 H--L-GEFLALTGAKLNGAEMMACGLATHYSVS 217 (399)
Q Consensus 188 ~--~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 217 (399)
. . ...++-...-++|+||+++||||+|+.+
T Consensus 149 ~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 149 LSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp S-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred CcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 1 1 2344445566899999999999999864
No 113
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.20 E-value=4.9e-05 Score=73.75 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=93.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEE
Q 015820 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (399)
Q Consensus 55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 134 (399)
.-+++++-.......++.++... +-+|-|--++++++ |.+-.+ .-....+.+.+..+....+|+|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 45677888999888888887653 55665555444443 322211 1112334455666778899999
Q ss_pred EEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCCHHHHHHcCcccee
Q 015820 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214 (399)
Q Consensus 135 Aav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~A~eA~~~GLv~~v 214 (399)
+.|-|.|.|||+-....||++++.+++.++. .++-|.+..|.+--.+ |.+ +...-+++|+++++.|+||+|
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV-------isPEg~a~Il~~d~~~-a~~-aA~~~~ita~dL~~~giiD~i 267 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV-------ATPEACAAILWKDSKK-SLD-AAEALKITSEDLKVLGIIDEI 267 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe-------cCHHHHHHHHhcchhh-HHH-HHHHcCCCHHHHHhCCCCeEe
Confidence 9999999888876556699999999988763 3334444445443322 211 234458999999999999999
Q ss_pred cCC
Q 015820 215 SVS 217 (399)
Q Consensus 215 v~~ 217 (399)
+|.
T Consensus 268 i~E 270 (322)
T CHL00198 268 IPE 270 (322)
T ss_pred ccC
Confidence 984
No 114
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.17 E-value=1.4e-05 Score=72.93 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEE
Q 015820 58 LNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (399)
Q Consensus 58 l~~~~~~eL~~~l~~~~~d~~v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 135 (399)
++..+...+...|..++..+..+ .|.|- |-|+++.. ...++..|...+.||++
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN------SpGG~v~a-------------------g~aI~d~i~~~~~~V~t 86 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID------SEGGDIDA-------------------GFAIFNMIRFVKPKVFT 86 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE------CCCCCHHH-------------------HHHHHHHHHhCCCCEEE
Confidence 66788888888887777622223 23333 34444432 12355566678899999
Q ss_pred EEcceeecccccccccCCe--EEEeCceEEeccccccCccCCCchhHH------------------HhhcchH--H-HHH
Q 015820 136 ILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY------------------LSHLPGH--L-GEF 192 (399)
Q Consensus 136 av~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------L~r~~g~--~-a~~ 192 (399)
.+.|.|.+.|.-++++||- |++.+++.|.+....-|+. |.+.- +...-|. . ...
T Consensus 87 ~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~---G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~ 163 (197)
T PRK14512 87 IGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK---GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK 163 (197)
T ss_pred EEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 9999999999999999985 8999999987765533321 11110 1111222 1 344
Q ss_pred HHHcCCCCCHHHHHHcCccceecCC
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVS 217 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~ 217 (399)
++-....++|+||+++||||+|++.
T Consensus 164 ~~~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 164 DTDRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred hhhcCcccCHHHHHHcCCccEeecC
Confidence 4555677999999999999999975
No 115
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.13 E-value=2.7e-05 Score=71.24 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceE--EEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEE
Q 015820 57 ALNTNMGAKLNKLFKAWENDPNIGF--VSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (399)
Q Consensus 57 al~~~~~~eL~~~l~~~~~d~~v~~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 134 (399)
.++.++.+++...|-.++.++..+- |.|-+ .|+++.. ...++..+...+.||.
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INS------pGG~v~~-------------------g~aIyd~m~~~~~~V~ 92 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINS------PGGSVIS-------------------GLAIYDTMQFVKPDVH 92 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEeC------CCcchhh-------------------HHHHHHHHHhcCCCEE
Confidence 3788999999999888875443232 23343 3444332 1235566778889999
Q ss_pred EEEcceeecccccccccCC--eEEEeCceEEeccccccCccCCCchhH-----------------HHhhcchH--H-HHH
Q 015820 135 AILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASF-----------------YLSHLPGH--L-GEF 192 (399)
Q Consensus 135 Aav~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~~g~--~-a~~ 192 (399)
..+.|.|.+.|.-|++++| .|++.++++|.+.....|+.-+ -.+- .+...-|. . ..+
T Consensus 93 Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G-~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~ 171 (200)
T CHL00028 93 TICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEG-QASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE 171 (200)
T ss_pred EEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999 6999999999988776553211 1111 11111222 1 345
Q ss_pred HHHcCCCCCHHHHHHcCccceecCCC
Q 015820 193 LALTGAKLNGAEMMACGLATHYSVSE 218 (399)
Q Consensus 193 l~ltG~~i~A~eA~~~GLv~~vv~~~ 218 (399)
++-....++|+||+++||||+|+++.
T Consensus 172 ~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 172 DMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HhhcCccCCHHHHHHcCCCcEEeecC
Confidence 55566779999999999999999764
No 116
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.13 E-value=7.4e-05 Score=72.51 Aligned_cols=137 Identities=12% Similarity=0.041 Sum_probs=92.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEE
Q 015820 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (399)
Q Consensus 55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 134 (399)
.-+++++-.......++.++.- .+-+|-|.-++++++ |.+..+. -....+.+.+..+....+|+|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~-------------G~~~aia~~l~a~s~~~VP~I 193 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEER-------------GQSEAIARNLREMARLGVPVI 193 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHH-------------HHHHHHHHHHHHHHcCCCCEE
Confidence 3567788888888888888765 355666655544433 3222211 123345556667788999999
Q ss_pred EEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchH--HHHHHHHcCCCCCHHHHHHcCccc
Q 015820 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--LGEFLALTGAKLNGAEMMACGLAT 212 (399)
Q Consensus 135 Aav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~--~a~~l~ltG~~i~A~eA~~~GLv~ 212 (399)
+.|-|.|.|||......||++++.+++.++ ++++-|++..|.+-... .+.+ -..+++.++.+.|+||
T Consensus 194 sVViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~iD 262 (316)
T TIGR00513 194 CTVIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGLID 262 (316)
T ss_pred EEEecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCCCe
Confidence 999999987777655579999999998776 34444455545443221 1222 2567899999999999
Q ss_pred eecCC
Q 015820 213 HYSVS 217 (399)
Q Consensus 213 ~vv~~ 217 (399)
+|++.
T Consensus 263 ~II~e 267 (316)
T TIGR00513 263 SIIPE 267 (316)
T ss_pred EeccC
Confidence 99984
No 117
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.11 E-value=3.8e-05 Score=69.81 Aligned_cols=136 Identities=15% Similarity=0.041 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEE
Q 015820 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (399)
Q Consensus 58 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 137 (399)
++..+..++...|..++.++..+-|+|.=. |.|+|+.. ...++..+...+.|+...+
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------g~~I~d~l~~~~~~v~t~~ 91 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITA-------------------GLAIYDTMQFIKPDVSTIC 91 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence 667778888888888876543333332211 33445432 1124445556666777778
Q ss_pred cceeecccccccccCC--eEEEeCceEEeccccccCccCCCchh---------------HHHhhcchH--H-HHHHHHcC
Q 015820 138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLALTG 197 (399)
Q Consensus 138 ~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~~g~--~-a~~l~ltG 197 (399)
.|.|.+.|.-+++++| .|++.+++.|.+.+..-|......-. ..+...-|. . ...++-.+
T Consensus 92 ~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~ 171 (191)
T TIGR00493 92 IGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERD 171 (191)
T ss_pred EEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 8999999998888765 69999999999977654432111111 112222332 2 45566777
Q ss_pred CCCCHHHHHHcCccceecC
Q 015820 198 AKLNGAEMMACGLATHYSV 216 (399)
Q Consensus 198 ~~i~A~eA~~~GLv~~vv~ 216 (399)
..++|+||+++||||+|+.
T Consensus 172 ~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 172 FFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred ccCcHHHHHHcCCccEEec
Confidence 8899999999999999975
No 118
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.10 E-value=6.9e-05 Score=79.06 Aligned_cols=139 Identities=12% Similarity=0.007 Sum_probs=94.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEE
Q 015820 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (399)
Q Consensus 55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 134 (399)
.-++++.-+......++.++... +-+|-|--+++++. |...... .....+.+.+..+....+|+|
T Consensus 220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDTpGA~p-G~~AEe~-------------Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYA-DLKSEEL-------------GQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CchhHHH-------------hHHHHHHHHHHHHhCCCCCEE
Confidence 44677888888888888887653 45565554444443 3222221 123345556677788999999
Q ss_pred EEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCCHHHHHHcCcccee
Q 015820 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214 (399)
Q Consensus 135 Aav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~A~eA~~~GLv~~v 214 (399)
+.|-|.|.|||+-...+||++++.++++++ +.++-|++..|.+-.... . -+...-.++|+++++.|+||+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~A~~s-------VisPEgaAsILwkd~~~A-~-eAAe~lkiTa~dL~~lGiiD~I 355 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLENAVFY-------VASPEACAAILWKSAKAA-P-KAAEKLRITAQELCRLQIADGI 355 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecCCeEE-------ecCHHHHHHHHhcCcccH-H-HHHHHcCCCHHHHHhCCCCeee
Confidence 999999998888877789999999988755 334444445454433321 1 1334568999999999999999
Q ss_pred cCC
Q 015820 215 SVS 217 (399)
Q Consensus 215 v~~ 217 (399)
+|.
T Consensus 356 IpE 358 (762)
T PLN03229 356 IPE 358 (762)
T ss_pred ccC
Confidence 984
No 119
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.07 E-value=9e-05 Score=72.01 Aligned_cols=139 Identities=12% Similarity=0.072 Sum_probs=95.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEE
Q 015820 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (399)
Q Consensus 55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 134 (399)
.-+++++-.......++.++.- ++-+|-|.-+++++. |.+-.+ .-....+.+.+..+....+|+|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 4567788888888888887765 355666665554443 332211 1123445566777889999999
Q ss_pred EEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCCHHHHHHcCcccee
Q 015820 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214 (399)
Q Consensus 135 Aav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~A~eA~~~GLv~~v 214 (399)
+.|-|.|.|||.-....||++++.+++.++ ++++-|++..|.+-... +.+.. ....+++.++++.|+||+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~~-a~~aa-e~~~ita~~l~~~g~iD~I 264 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDASK-APEAA-EAMKITAQDLKELGIIDEI 264 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCchh-HHHHH-HHcCCCHHHHHHCCCceEe
Confidence 999999988887655579999999888765 44555555555554322 22222 2556899999999999999
Q ss_pred cCC
Q 015820 215 SVS 217 (399)
Q Consensus 215 v~~ 217 (399)
++.
T Consensus 265 I~E 267 (319)
T PRK05724 265 IPE 267 (319)
T ss_pred ccC
Confidence 984
No 120
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.05 E-value=0.00013 Score=72.73 Aligned_cols=136 Identities=13% Similarity=0.039 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEE
Q 015820 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (399)
Q Consensus 56 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 135 (399)
-+++++-.......++.++... +-+|-|.-+++++ .|.+..+ ......+.+.+..+....+|+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpGA~-pG~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS 264 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPGAY-AGIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA 264 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-CCHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence 4678888999888888887653 5566555544433 2222221 11233455566777899999999
Q ss_pred EEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchH-H-HHHHHHcCCCCCHHHHHHcCccce
Q 015820 136 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-L-GEFLALTGAKLNGAEMMACGLATH 213 (399)
Q Consensus 136 av~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~-a~~l~ltG~~i~A~eA~~~GLv~~ 213 (399)
.|-|.+.|||.-...+||++++.+++.++ +.++-|.+..|.+--.. . +.+ .-.++|+++++.|+||+
T Consensus 265 VViGeGgSGGAlalg~aD~VlMle~A~ys-------VisPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~ 333 (431)
T PLN03230 265 TVIGEGGSGGALAIGCGNRMLMMENAVYY-------VASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDE 333 (431)
T ss_pred EEeCCCCcHHHHHhhcCCEEEEecCCEEE-------ecCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeE
Confidence 99999966665555578999999988765 33333444444432221 2 333 33899999999999999
Q ss_pred ecCC
Q 015820 214 YSVS 217 (399)
Q Consensus 214 vv~~ 217 (399)
|++.
T Consensus 334 II~E 337 (431)
T PLN03230 334 IVPE 337 (431)
T ss_pred eccC
Confidence 9985
No 121
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.96 E-value=0.00043 Score=66.83 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=94.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDP----NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~----~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (399)
|+.+-.+..-..-+++......+..+++.+.++. .+-+|+|.-+|+. -+.+-. ..+..+.+ .
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGa-----RlqEg~--------~~L~~~a~-i 135 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGV-----RLQEAN--------AGLAAIAE-I 135 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCc-----CccchH--------HHHHHHHH-H
Confidence 4445455544667888888899999998887664 2566766655433 332210 01111111 1
Q ss_pred HHHHHHHccCCCcEEEEEcce--eecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchH--H-HHHHH
Q 015820 120 YSFIYLLGTHLKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLA 194 (399)
Q Consensus 120 ~~l~~~i~~~~kP~IAav~G~--a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~--~-a~~l~ 194 (399)
...+..+... +|+|+.+.|+ |+||+...+.+||++|+++++.+++. +...+....|. . ..+..
T Consensus 136 ~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~ 203 (301)
T PRK07189 136 MRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA 203 (301)
T ss_pred HHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhc
Confidence 2222233444 9999999999 99999999999999999998877763 22222222331 1 33333
Q ss_pred HcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 015820 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (399)
Q Consensus 195 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l 227 (399)
+..+.+.+......|++|.+++++. +++..++
T Consensus 204 ~vw~~lGG~h~~~sG~~D~~v~dd~-~a~~~~~ 235 (301)
T PRK07189 204 LVWRTTGGKHRYLSGLADALVDDDV-AAFRAAA 235 (301)
T ss_pred ccccccCcceeeecccceEEeCCHH-HHHHHHH
Confidence 3222233334556899999998764 3344433
No 122
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.88 E-value=0.00027 Score=67.48 Aligned_cols=157 Identities=11% Similarity=0.065 Sum_probs=97.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWEND----PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d----~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (399)
|.++-.+..-..-+++...-..+..+++.+.+| ..+-+|.|.-+|+ .-+.+-. ..+..+.+ .
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG-----aRlqEg~--------~~L~~~a~-i 126 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG-----VRLQEAN--------AGLIAIAE-I 126 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC-----cChhhhH--------HHHHHHHH-H
Confidence 444445444456678888888899999888751 2234666665443 3332211 11111111 1
Q ss_pred HHHHHHHccCCCcEEEEEcce--eecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchH--H-HHHHH
Q 015820 120 YSFIYLLGTHLKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLA 194 (399)
Q Consensus 120 ~~l~~~i~~~~kP~IAav~G~--a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~--~-a~~l~ 194 (399)
......+... +|+|+.+.|+ |+||+..++.+||++|+++++++++. +...+....|. . ..+-.
T Consensus 127 ~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~ 194 (274)
T TIGR03133 127 MRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA 194 (274)
T ss_pred HHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhc
Confidence 2222233444 9999999999 89999999999999999998877763 22223333342 2 44444
Q ss_pred HcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 015820 195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (399)
Q Consensus 195 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l 227 (399)
|..+.+.+......|++|.+++++. +++..++
T Consensus 195 l~~~~lGG~~~~~sG~~D~~v~dd~-~a~~~~~ 226 (274)
T TIGR03133 195 LVWRTTGGKHRFLSGDADVLVEDDV-DAFRAAV 226 (274)
T ss_pred ccccccchHhHhhcccceEEeCCHH-HHHHHHH
Confidence 5555667777888999999999854 3344443
No 123
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.83 E-value=0.00019 Score=65.54 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=92.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCC---CceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcE
Q 015820 57 ALNTNMGAKLNKLFKAWENDP---NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133 (399)
Q Consensus 57 al~~~~~~eL~~~l~~~~~d~---~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~ 133 (399)
.++.++-..+...|-.++..+ .+.+ .|-+ .|+|+.. ...++..+...+-||
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l-~INS------pGG~v~~-------------------GlaIyd~m~~~~~~V 88 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQM-YINC------PGGEVYA-------------------GLAIYDTMRYIKAPV 88 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEE-EEEC------CCCchhh-------------------HHHHHHHHHhcCCCE
Confidence 478888888888887777543 3433 3343 4444432 123556677788899
Q ss_pred EEEEcceeecccccccccCCe--EEEeCceEEeccccccCccCCCchhHH-----------------HhhcchHH---HH
Q 015820 134 VAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGHL---GE 191 (399)
Q Consensus 134 IAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~-----------------L~r~~g~~---a~ 191 (399)
...+.|.|.+.|..|++++|- |++.+++.+-+.....|+. +...-. +.+.-|.. -.
T Consensus 89 ~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~ 166 (201)
T PRK14513 89 STICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLL 166 (201)
T ss_pred EEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999995 9999999999887765541 112211 11122321 23
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCCCh
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSEKL 220 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 220 (399)
.++-....++|+||+++||||+|+++...
T Consensus 167 ~~~~rd~~msa~EA~eyGliD~I~~~~~~ 195 (201)
T PRK14513 167 RDMERDYFMSPEEAKAYGLIDSVIEPTRV 195 (201)
T ss_pred HHhccCcccCHHHHHHcCCCcEEeccCCC
Confidence 44455567999999999999999987543
No 124
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.81 E-value=0.00019 Score=66.51 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcE
Q 015820 57 ALNTNMGAKLNKLFKAWEND---PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133 (399)
Q Consensus 57 al~~~~~~eL~~~l~~~~~d---~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~ 133 (399)
.++..+...+...|..++.. ..+.+ .|-+.|+ ++.. ...++..+...+-||
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~l-yINSpGG------sv~a-------------------GlaIyd~m~~~~~~V 115 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISI-YINSPGG------SVYA-------------------GLGIYDTMQFISSDV 115 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEE-EEECCCc------chhh-------------------HHHHHHHHHhcCCCE
Confidence 36778888888877666543 23433 3344333 3321 112555667788899
Q ss_pred EEEEcceeecccccccccCCe--EEEeCceEEeccccccCccCCCchhH---------------HHhhcchHH---HHHH
Q 015820 134 VAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGHL---GEFL 193 (399)
Q Consensus 134 IAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~~g~~---a~~l 193 (399)
...+-|.|.+.|.-|++++|. |++.+++.+.+....-|......-.. .+...-|.. ..++
T Consensus 116 ~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~ 195 (221)
T PRK14514 116 ATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWAD 195 (221)
T ss_pred EEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999999996 89999999988776544321111000 011122321 3445
Q ss_pred HHcCCCCCHHHHHHcCccceecCC
Q 015820 194 ALTGAKLNGAEMMACGLATHYSVS 217 (399)
Q Consensus 194 ~ltG~~i~A~eA~~~GLv~~vv~~ 217 (399)
+-....++|+||+++||||+|+..
T Consensus 196 ~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 196 SDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred hhcCccCCHHHHHHcCCccEEeec
Confidence 566677999999999999999864
No 125
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.81 E-value=0.00025 Score=66.93 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=77.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEE
Q 015820 55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (399)
Q Consensus 55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 134 (399)
.+.++.+...++.++++....+..+- ++|.. -|+++..- .++...+.+++.|++
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~Id-Lii~T------pGG~v~AA-------------------~~I~~~l~~~~~~v~ 122 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPID-LIIHT------PGGLVDAA-------------------EQIARALREHPAKVT 122 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCceE-EEEEC------CCCcHHHH-------------------HHHHHHHHhCCCCEE
Confidence 46688888899999998887776653 34443 44444421 235556778899999
Q ss_pred EEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCch
Q 015820 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA 178 (399)
Q Consensus 135 Aav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~ 178 (399)
+.|++.|+.||.-++++||-+++.+.+.+|--..++|-.|..+.
T Consensus 123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si 166 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI 166 (285)
T ss_pred EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence 99999999999999999999999999999999999998886543
No 126
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.79 E-value=0.0002 Score=70.19 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceee
Q 015820 63 GAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (399)
Q Consensus 63 ~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 142 (399)
.+.+.+.|+.+..|+.++.|+|.=. |-|+.... ...+++.++.+..-. ||++.+++.|.
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a----------------s~~i~~~l~~l~~~~-PV~v~v~~~AA 140 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA----------------SELIARALKRLRAKK-PVVVSVGGYAA 140 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH----------------HHHHHHHHHHHhhcC-CEEEEECCeec
Confidence 4566677888889999999888643 33443322 112233344444444 99999999999
Q ss_pred cccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhc---------------------------------c---
Q 015820 143 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL---------------------------------P--- 186 (399)
Q Consensus 143 GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~---------------------------------~--- 186 (399)
-||..++++||.+||++.+..|--.+..+. |. ....+.+. +
T Consensus 141 SGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~--~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~ 217 (317)
T COG0616 141 SGGYYIALAADKIVADPSSITGSIGVISGA-PN--FEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET 217 (317)
T ss_pred chhhhhhccCCEEEecCCceeeeceeEEec-CC--HHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998877644333331 11 11111111 0
Q ss_pred ------------h-HH-HHHHHHcCCCCCHHHHHHcCccceecCCCC
Q 015820 187 ------------G-HL-GEFLALTGAKLNGAEMMACGLATHYSVSEK 219 (399)
Q Consensus 187 ------------g-~~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~ 219 (399)
+ .. ...-+.+|+-+++++|++.||||++...++
T Consensus 218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~ 264 (317)
T COG0616 218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDD 264 (317)
T ss_pred HHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHH
Confidence 0 11 223466899999999999999999987543
No 127
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.78 E-value=0.00017 Score=70.65 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=92.5
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHH
Q 015820 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY 120 (399)
Q Consensus 41 ~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 120 (399)
.+.|++|.++.+=..+ -...+..++...+..+..+ .+|||+-. |.|+.+..... . ..
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~~---------a---~~--- 145 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYGL---------A---AS--- 145 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHHH---------H---HH---
Confidence 4678888887642111 1223445566666555433 46666654 33443332110 0 01
Q ss_pred HHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCch----------------------
Q 015820 121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA---------------------- 178 (399)
Q Consensus 121 ~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~---------------------- 178 (399)
.+..+....||+|+++++.|.-||..++++||.+++.+.+.+|.-.+-.. .|....
T Consensus 146 -~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~ 223 (330)
T PRK11778 146 -QLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLT 223 (330)
T ss_pred -HHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCC
Confidence 12334567899999999999999999999999999999887765433211 111110
Q ss_pred -----h----HHHhhcc---------------hHHHHHHHHcCCCCCHHHHHHcCccceecCCCCh
Q 015820 179 -----S----FYLSHLP---------------GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (399)
Q Consensus 179 -----~----~~L~r~~---------------g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 220 (399)
+ ..+...+ +....+-+.+|+.+++++|++.||||++...+++
T Consensus 224 pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 224 LFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 0 0011111 1011223568999999999999999999876554
No 128
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.75 E-value=0.00041 Score=63.23 Aligned_cols=140 Identities=12% Similarity=0.033 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEE
Q 015820 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136 (399)
Q Consensus 57 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa 136 (399)
.++..+..++...|..++.++..+-+.+.=. |.|+++.. ...++..+...+-||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYD-------------------GLGIFDTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence 3788999999999988875432232222211 33444432 113555666788899999
Q ss_pred EcceeecccccccccCCe--EEEeCceEEeccccccCccCCCchhH---------------HHhhcchHH---HHHHHHc
Q 015820 137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGHL---GEFLALT 196 (399)
Q Consensus 137 v~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~~g~~---a~~l~lt 196 (399)
+.|.|.+.|.-|++++|- |++.+++.+.+....-|..-...-.. .+...-|.. ..+++-.
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r 169 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR 169 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999985 88999999988776433211110010 011112221 3445555
Q ss_pred CCCCCHHHHHHcCccceecCCCC
Q 015820 197 GAKLNGAEMMACGLATHYSVSEK 219 (399)
Q Consensus 197 G~~i~A~eA~~~GLv~~vv~~~~ 219 (399)
...++|+||+++||||+|++...
T Consensus 170 d~~msa~EA~eyGliD~I~~~~~ 192 (196)
T PRK12551 170 DFFMSPSEAVEYGLIDLVIDKRP 192 (196)
T ss_pred CcCCCHHHHHHcCCCcEEeccCC
Confidence 66799999999999999998643
No 129
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.72 E-value=0.0014 Score=61.50 Aligned_cols=165 Identities=12% Similarity=0.017 Sum_probs=95.6
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHH
Q 015820 42 ANSRMAILNRPSALNALNTNMGAKLNKLFKAW-ENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY 120 (399)
Q Consensus 42 ~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~-~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 120 (399)
+.-..|.=|.|.. .++.+-...+...+... +.+.++-+|.|.-+.+ |-.|..-... -..+....+.
T Consensus 31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~aE~~----------G~~~a~A~l~ 97 (238)
T TIGR03134 31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRREELL----------GINQALAHLA 97 (238)
T ss_pred CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHHHHHH----------HHHHHHHHHH
Confidence 4444444455542 68877777788888775 4456666776665432 2222211111 1112222222
Q ss_pred HHHHHHccCCCcEEEEEcceeecccc-cccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHc--C
Q 015820 121 SFIYLLGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALT--G 197 (399)
Q Consensus 121 ~l~~~i~~~~kP~IAav~G~a~GgG~-~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~lt--G 197 (399)
..+......+.|+|+.|-|.++|||+ .+.+.+|.+++.+++. ++..++-+++..+.+-... ..++.-+ -
T Consensus 98 ~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~-------i~vm~~e~aa~I~~~~~~~-~~e~a~~~~~ 169 (238)
T TIGR03134 98 KALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAM-------VHVMDLESMARVTKRSVEE-LEALAKSSPV 169 (238)
T ss_pred HHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcE-------EEecCHHHHHHHHccCHhH-HHHHHHhhhh
Confidence 33334446669999999999998877 5555588887776655 4555656666555544432 2222211 1
Q ss_pred CCCCHHHHHHcCccceecCCCChhHHHHHH
Q 015820 198 AKLNGAEMMACGLATHYSVSEKLPLIEEEL 227 (399)
Q Consensus 198 ~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l 227 (399)
-..+...+.++|+||+|+++.+-+....++
T Consensus 170 ~a~~~~~~~~~G~vd~vi~~~~~~~~~~~~ 199 (238)
T TIGR03134 170 FAPGIENFVKLGGVHALLDVADADAPAAQL 199 (238)
T ss_pred hccCHHHHHhCCCccEEeCCCCcccHHHHH
Confidence 235677899999999999976643333443
No 130
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.53 E-value=0.0022 Score=61.77 Aligned_cols=148 Identities=12% Similarity=0.134 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (399)
|+++-.+..-..-+++....+.+..+++.+... .+-+|.|...|++ -+.+ +. ..+..+ .......
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqE-------g~-~sL~~~-ak~~~~~ 186 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQE-------AL-LSLMQM-AKTSAAL 186 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----cccc-------ch-hHHHhH-HHHHHHH
Confidence 444444444456789999999999999888755 4667888776543 1111 11 111111 1222233
Q ss_pred HHHccCCCcEEEEEcceeeccccc-ccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCCH
Q 015820 124 YLLGTHLKPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG 202 (399)
Q Consensus 124 ~~i~~~~kP~IAav~G~a~GgG~~-Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~A 202 (399)
..+.....|.|+.+-|+|+||+.. +++.+|++|+.++|.+++.... .+...+|.. +.-+.=+|
T Consensus 187 ~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~-----lpe~~q~a 250 (285)
T TIGR00515 187 AKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREK-----LPEGFQTS 250 (285)
T ss_pred HHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCc-----cchhcCCH
Confidence 445567899999999999999654 5679999999999888774322 122222211 11112255
Q ss_pred HHHHHcCccceecCCCChhH
Q 015820 203 AEMMACGLATHYSVSEKLPL 222 (399)
Q Consensus 203 ~eA~~~GLv~~vv~~~~l~~ 222 (399)
+-+.+.|+||.|+++.++..
T Consensus 251 e~~~~~G~vD~iv~~~~~r~ 270 (285)
T TIGR00515 251 EFLLEHGAIDMIVHRPEMKK 270 (285)
T ss_pred HHHHhCCCCcEEECcHHHHH
Confidence 55778999999999987754
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.49 E-value=0.0021 Score=62.17 Aligned_cols=145 Identities=13% Similarity=0.108 Sum_probs=91.2
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 015820 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (399)
Q Consensus 47 Itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (399)
|.-|.+. ..-+++....+.+..+++.+... .+-+|.|.-.|+ +-+.+ +. ..+..+ .........
T Consensus 125 v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqE-------gi-~sL~~~-ak~~~a~~~ 189 (292)
T PRK05654 125 LAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQE-------GL-LSLMQM-AKTSAALKR 189 (292)
T ss_pred EEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhh-------hh-hHHHhH-HHHHHHHHH
Confidence 3344443 67889999999999999988766 466777776553 22211 10 011111 122223334
Q ss_pred HccCCCcEEEEEcceeecccc-cccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCCHHH
Q 015820 126 LGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204 (399)
Q Consensus 126 i~~~~kP~IAav~G~a~GgG~-~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~A~e 204 (399)
+....+|.|+.+.|+|+||+. .+++.+|++|+.++|.+++-..+ .+...++. ++ .-+.=+++-
T Consensus 190 ~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e---~l--pe~~~~ae~ 253 (292)
T PRK05654 190 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE---KL--PEGFQRAEF 253 (292)
T ss_pred HHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh---hh--hhhhcCHHH
Confidence 556789999999999999966 45778999999998877763221 11111111 11 111225666
Q ss_pred HHHcCccceecCCCChhH
Q 015820 205 MMACGLATHYSVSEKLPL 222 (399)
Q Consensus 205 A~~~GLv~~vv~~~~l~~ 222 (399)
+.+.|+||.|+++.++..
T Consensus 254 ~~~~G~vD~Vv~~~e~r~ 271 (292)
T PRK05654 254 LLEHGAIDMIVHRRELRD 271 (292)
T ss_pred HHhCCCCcEEECHHHHHH
Confidence 778999999999987754
No 132
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.26 E-value=0.0058 Score=58.85 Aligned_cols=149 Identities=12% Similarity=0.128 Sum_probs=90.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (399)
|+++-.+..=..-+++...-..+..+++.+.... +-+|+++..|+ +-+.+ +. ..+..+.+....+.
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SGG-----ARmQE-------g~-~sL~qmak~saa~~ 200 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASGG-----ARMQE-------GS-LSLMQMAKISSALY 200 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCCC-----ccccc-------cc-hhhhhhHHHHHHHH
Confidence 4444455444667889899999999998887654 56777776544 33321 11 01111111111111
Q ss_pred HHHccCCCcEEEEEcceeecccccc-cccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCCH
Q 015820 124 YLLGTHLKPHVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG 202 (399)
Q Consensus 124 ~~i~~~~kP~IAav~G~a~GgG~~L-al~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~A 202 (399)
.....-..|.|+.+.|+|.||+... +++||++|+.+++.+++...+ .....+|.. +.-..=+|
T Consensus 201 ~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge~-----lpe~fq~a 264 (296)
T CHL00174 201 DYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNKT-----VPEGSQAA 264 (296)
T ss_pred HHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCCc-----CCcccccH
Confidence 1122467999999999999998865 667999999888877654221 111111110 01111146
Q ss_pred HHHHHcCccceecCCCChhH
Q 015820 203 AEMMACGLATHYSVSEKLPL 222 (399)
Q Consensus 203 ~eA~~~GLv~~vv~~~~l~~ 222 (399)
+-.++.|+||.||+..++..
T Consensus 265 e~l~~~G~vD~iV~r~~lr~ 284 (296)
T CHL00174 265 EYLFDKGLFDLIVPRNLLKG 284 (296)
T ss_pred HHHHhCcCceEEEcHHHHHH
Confidence 66778999999999877654
No 133
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.13 E-value=0.0044 Score=65.79 Aligned_cols=86 Identities=13% Similarity=-0.062 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcce
Q 015820 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (399)
Q Consensus 61 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~ 140 (399)
..+.++.++|+.+..|+.|++|||.-.+ +.|..+..+. .+.+.+..+....|||||..+++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~----------------ei~~ai~~fk~sgKpVvA~~~~~ 136 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV----------------EIGSALSEFKDSGKPVYAYGTNY 136 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----------------HHHHHHHHHHhcCCeEEEEEccc
Confidence 3567899999999999999999998753 1244433221 22334444556789999988877
Q ss_pred eecccccccccCCeEEEeCceEEecc
Q 015820 141 TMGGGAGVSIPGTFRVACGKTVFATP 166 (399)
Q Consensus 141 a~GgG~~Lal~cD~ria~~~a~f~~p 166 (399)
+ -+|.-|+.+||-+++.+.+.+++.
T Consensus 137 ~-s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 137 S-QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred c-chhhhhhhhCCEEEECCCceEEee
Confidence 6 578999999999999998777553
No 134
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0093 Score=59.96 Aligned_cols=147 Identities=11% Similarity=0.156 Sum_probs=105.4
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe-cCCCCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 015820 41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMK-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL 119 (399)
Q Consensus 41 ~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 119 (399)
.+.|..+.++. .+++.+.+.+.+.++.++++..- +|||. .+.+ + +...+
T Consensus 25 ~~~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a~-~vvl~ldTPG-----G-------------------l~~sm 74 (436)
T COG1030 25 EKKVYVIEIDG-----AIDPASADYLQRALQSAEEENAA-AVVLELDTPG-----G-------------------LLDSM 74 (436)
T ss_pred CCeEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCCc-EEEEEecCCC-----c-------------------hHHHH
Confidence 34577777754 58999999999999999987633 34332 2211 0 12346
Q ss_pred HHHHHHHccCCCcEEEEEc---ceeecccccccccCCeEEEeCceEEeccccccCc---cCCCc-hhHH------Hhhcc
Q 015820 120 YSFIYLLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF---HPDAG-ASFY------LSHLP 186 (399)
Q Consensus 120 ~~l~~~i~~~~kP~IAav~---G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl---~p~~g-~~~~------L~r~~ 186 (399)
.++.+.+.+.+.|++..|. +.|..+|..++++||+..+++.+.+|--..-.+- .+... .... +++.-
T Consensus 75 ~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~ 154 (436)
T COG1030 75 RQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEER 154 (436)
T ss_pred HHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHc
Confidence 6788889999999999885 4699999999999999999999998765543222 11111 1111 22223
Q ss_pred hH--H-HHHHHHcCCCCCHHHHHHcCccceecCC
Q 015820 187 GH--L-GEFLALTGAKLNGAEMMACGLATHYSVS 217 (399)
Q Consensus 187 g~--~-a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 217 (399)
|+ . |.+++.....++++||++.|++|-+..+
T Consensus 155 gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 155 GRNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred CCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 43 2 7889999999999999999999988765
No 135
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.04 E-value=0.00041 Score=60.81 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=59.1
Q ss_pred ccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccc------------cCc---------cCCCc-----hh-
Q 015820 127 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGF---------HPDAG-----AS- 179 (399)
Q Consensus 127 ~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~------------~Gl---------~p~~g-----~~- 179 (399)
....|||||.++|.|..+|.-|+.+||-+++.+.+.++...+. +|+ .-..+ .+
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~ 82 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE 82 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence 4678999999999999999999999999999998877654332 222 11111 11
Q ss_pred ---HHHhhcc---------------h--HHHHHHHHcCCCCCHHHHHHcCccceecCCCChh
Q 015820 180 ---FYLSHLP---------------G--HLGEFLALTGAKLNGAEMMACGLATHYSVSEKLP 221 (399)
Q Consensus 180 ---~~L~r~~---------------g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~ 221 (399)
..+.+.+ | ....+-+..|..+++++|++.||||++...+++.
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~ 144 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAI 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHH
Confidence 1111111 1 1111225799999999999999999998655543
No 136
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.02 E-value=0.011 Score=61.67 Aligned_cols=139 Identities=14% Similarity=0.189 Sum_probs=90.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCC--ChhhHHHhhccCChHHHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG--DIVSLYHFMNQGKLEECKDFFRTLYS 121 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~ 121 (399)
|.++-.+..-..-+++......+..+++.+..+. +-+|.|.- |+|. .+.+-. .....+.. ...
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~--------~~l~~~g~-i~~ 123 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGV--------ESLMGMGR-IFR 123 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHH--------HHHHHHHH-HHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhh--------hhhhhhHH-HHH
Confidence 3334444444667899999999999999888764 45565554 3444 333321 11112222 222
Q ss_pred HHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCc-eEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCC
Q 015820 122 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL 200 (399)
Q Consensus 122 l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i 200 (399)
-...+.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++. |...+. ..+|+.+
T Consensus 124 ~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------GP~vv~----------~~~Ge~~ 181 (493)
T PF01039_consen 124 AIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------GPRVVE----------SATGEEV 181 (493)
T ss_dssp HHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------THHHHH----------HHHSSCT
T ss_pred HHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec-----------cccccc----------cccCccc
Confidence 2333445 9999999999999999999999999999997 776643 111111 2467888
Q ss_pred CHHHH-------HHcCccceecCCCC
Q 015820 201 NGAEM-------MACGLATHYSVSEK 219 (399)
Q Consensus 201 ~A~eA-------~~~GLv~~vv~~~~ 219 (399)
+.++. ...|++|.++++++
T Consensus 182 ~~~~lgG~~~h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 182 DSEELGGADVHAAKSGVVDYVVDDEE 207 (493)
T ss_dssp SHHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred cchhhhhhhhhcccCCCceEEEechH
Confidence 87664 47899999998753
No 137
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.89 E-value=0.023 Score=59.38 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=96.1
Q ss_pred EcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHc
Q 015820 49 LNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG 127 (399)
Q Consensus 49 lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 127 (399)
-|+|. ..-+++........+.++.+.+. .+-+|.|.-.++ |..|.+- +.....+...+++.++.
T Consensus 321 And~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~-------------E~~g~~~~~a~~~~a~~ 385 (512)
T TIGR01117 321 ANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQ-------------EYGGIIRHGAKVLYAYS 385 (512)
T ss_pred EeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHH-------------HHHHHHHHHHHHHHHHH
Confidence 34443 34579999999999999988754 466777766544 4444321 12223445556777888
Q ss_pred cCCCcEEEEEcceeecccccccc----cCCeEEEeCceEEeccccccCccCCCchhHHHhhc-ch----HH-HHH--H-H
Q 015820 128 THLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PG----HL-GEF--L-A 194 (399)
Q Consensus 128 ~~~kP~IAav~G~a~GgG~~Lal----~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-~g----~~-a~~--l-~ 194 (399)
...+|.|+.|-|.+.|||..-.. .+|++++.+++.++ +.++-++...+.+. +. .. +.. + -
T Consensus 386 ~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~-------v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~ 458 (512)
T TIGR01117 386 EATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA-------VMGPAGAANIIFRKDIKEAKDPAATRKQKIAE 458 (512)
T ss_pred hCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe-------ecCHHHHHHHHhhhhcccccCHHHHHHHHHHH
Confidence 89999999999999887553332 28998888877665 44333433333221 10 01 111 1 1
Q ss_pred HcCCCCCHHHHHHcCccceecCCCChhH
Q 015820 195 LTGAKLNGAEMMACGLATHYSVSEKLPL 222 (399)
Q Consensus 195 ltG~~i~A~eA~~~GLv~~vv~~~~l~~ 222 (399)
..-+..++..+.+.|+||.|+++.+...
T Consensus 459 ~~~~~~~~~~~a~~g~vD~VI~P~~tR~ 486 (512)
T TIGR01117 459 YREEFANPYKAAARGYVDDVIEPKQTRP 486 (512)
T ss_pred HHHhhcCHHHHHhcCCCCeeEChHHHHH
Confidence 1223447889999999999999977653
No 138
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.85 E-value=0.0049 Score=55.94 Aligned_cols=97 Identities=15% Similarity=0.034 Sum_probs=65.4
Q ss_pred HHHHHccCCCcEEEEEcceeecccccccccCCeE--EEeCceEEeccccccCccCCCchhHH-----------------H
Q 015820 122 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR--VACGKTVFATPETLIGFHPDAGASFY-----------------L 182 (399)
Q Consensus 122 l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~r--ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------L 182 (399)
++..+...+.||...+-|.|...|..|++++|.. ++.+++++-+.... |.+-|. ++-+ +
T Consensus 77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~-a~Di~i~A~ei~~~~~~l~~i~ 154 (200)
T COG0740 77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQ-ASDIEIHAREILKIKERLNRIY 154 (200)
T ss_pred HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999999999999999999885 88888887776555 322111 1110 0
Q ss_pred hhcchHH---HHHHHHcCCCCCHHHHHHcCccceecCCCCh
Q 015820 183 SHLPGHL---GEFLALTGAKLNGAEMMACGLATHYSVSEKL 220 (399)
Q Consensus 183 ~r~~g~~---a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 220 (399)
+..-|.. -....-....++|+||+++||||+|+.....
T Consensus 155 a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 155 AEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred HHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 0011111 1222334456899999999999999987543
No 139
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.79 E-value=0.021 Score=52.89 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEE
Q 015820 58 LNTNMGAKLNKLFKAWENDP---NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (399)
Q Consensus 58 l~~~~~~eL~~~l~~~~~d~---~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 134 (399)
.+.++.+.+...|-.++.++ .+ -+-|-+.|+...+|-=+.... ....++..+...+-||.
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I-~lyINSpGGsv~~G~~iG~v~----------------~glaIyD~m~~ik~~V~ 111 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPI-YFYINSTGTSWYTGDAIGFET----------------EAFAICDTMRYIKPPVH 111 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCE-EEEEeCCCCCccccccccccc----------------cHHHHHHHHHhcCCCeE
Confidence 34458888887777775543 34 344556665555551111110 11235555667778899
Q ss_pred EEEcceeecccccccccCCe--EEEeCceEEeccccccCccCCCchhHHHhh------------------cchHH---HH
Q 015820 135 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFYLSH------------------LPGHL---GE 191 (399)
Q Consensus 135 Aav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r------------------~~g~~---a~ 191 (399)
..+-|.|.+.|..|++++|- |++.+++++-+.....|.. |.+.-+.. .-|.. -.
T Consensus 112 Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~ 188 (222)
T PRK12552 112 TICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLS 188 (222)
T ss_pred EEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999995 8999999998877654432 22211111 11111 12
Q ss_pred HHHHcCCCCCHHHHHHcCccceecCCC
Q 015820 192 FLALTGAKLNGAEMMACGLATHYSVSE 218 (399)
Q Consensus 192 ~l~ltG~~i~A~eA~~~GLv~~vv~~~ 218 (399)
.++-....++|+||+++||||+|+.+.
T Consensus 189 ~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 189 KDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 233334569999999999999999753
No 140
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.35 E-value=0.049 Score=57.47 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=86.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (399)
|+++--+..-+.-+++....+.+..+++.+.+.. +-+|.|.-.|+++-.+ ....+. ....+. .+..-.
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGarl~~-q~e~~~---------~~~~~g-~if~~~ 198 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGANLPR-QAEVFP---------DRDHFG-RIFYNQ 198 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCCcc-cccccc---------hHhHHH-HHHHHH
Confidence 3333333333678899999999999999887664 5677666654443211 111110 000111 111111
Q ss_pred HHHccCCCcEEEEEcceeecccccccccCCeEEEeCc-eEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCCH
Q 015820 124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG 202 (399)
Q Consensus 124 ~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~A 202 (399)
..+....+|.|+.|.|+|.|||.....+||++|++++ +.+.+. +...+.. .+|+.+++
T Consensus 199 ~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a-----------GP~vV~~----------~~Ge~v~~ 257 (569)
T PLN02820 199 ARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA-----------GPPLVKA----------ATGEEVSA 257 (569)
T ss_pred HHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec-----------CHHHHHh----------hcCcccCH
Confidence 2244567999999999999999999999999999874 555441 1111111 35566666
Q ss_pred HHH-----H--HcCccceecCCCC
Q 015820 203 AEM-----M--ACGLATHYSVSEK 219 (399)
Q Consensus 203 ~eA-----~--~~GLv~~vv~~~~ 219 (399)
++. . ..|.++.+++++.
T Consensus 258 eeLGGa~~h~~~sGv~d~~~~de~ 281 (569)
T PLN02820 258 EDLGGADVHCKVSGVSDHFAQDEL 281 (569)
T ss_pred HHhCCHHHhcccccccccccCchH
Confidence 554 2 4788888887753
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.18 E-value=0.051 Score=56.83 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=83.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (399)
|+++-.+..-+.-+++......+..+++.+.++. +-+|.|.-.|+. .+.+-. ..+..+.+.+...
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGa-----rm~eg~--------~~l~~~~~~~~~~- 148 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGA-----RIQEAV--------DALKGYGDIFYRN- 148 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCC-----Cccccc--------hhhhhHHHHHHHH-
Confidence 3333344443567888888999999998887765 456666654433 222100 0001111111111
Q ss_pred HHHccCCCcEEEEEcceeecccccccccCCeEEEeCce-EEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCCH
Q 015820 124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG 202 (399)
Q Consensus 124 ~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a-~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~A 202 (399)
....-..|.|+++.|+|.||+.....+||++|+.+++ .+++. +...+.. .+|+.+++
T Consensus 149 -~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~vv~~----------~~Ge~v~~ 206 (512)
T TIGR01117 149 -TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQVIKT----------VTGEEVTA 206 (512)
T ss_pred -HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------ChHHHHh----------hcCcccch
Confidence 1123458999999999999998888899999999964 44431 1111222 34555555
Q ss_pred HHH-----H--HcCccceecCCCC
Q 015820 203 AEM-----M--ACGLATHYSVSEK 219 (399)
Q Consensus 203 ~eA-----~--~~GLv~~vv~~~~ 219 (399)
++. . ..|++|.+++++.
T Consensus 207 e~lGGa~~h~~~sGv~d~~~~de~ 230 (512)
T TIGR01117 207 EQLGGAMAHNSVSGVAHFIAEDDD 230 (512)
T ss_pred hhcchHHHhccccceeEEecCChH
Confidence 544 2 5899999988753
No 142
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.88 E-value=0.14 Score=48.49 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=94.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (399)
|+...++..=-.-+|..-.=..+..+++.+-.+ .+.+|+++.+|++ -+.+- ....-........+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGGA-----RMQEg---------~lSLMQMaktsaAl 188 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGGA-----RMQEG---------ILSLMQMAKTSAAL 188 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcch-----hHhHH---------HHHHHHHHHHHHHH
Confidence 444444443345678877778889999888765 4789999886542 22210 00011122233445
Q ss_pred HHHccCCCcEEEEEcceeecc-cccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCCH
Q 015820 124 YLLGTHLKPHVAILNGVTMGG-GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG 202 (399)
Q Consensus 124 ~~i~~~~kP~IAav~G~a~Gg-G~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~A 202 (399)
..+.....|.|+.+.++.+|| -+.+++..|+.|+.++|.+||...++ +-..++ +=+-.| .=++
T Consensus 189 ~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-----------IEQTir----e~LPeg-fQ~a 252 (294)
T COG0777 189 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-----------IEQTIR----EKLPEG-FQTA 252 (294)
T ss_pred HHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-----------hhhhhc----ccCCcc-hhhH
Confidence 567778999999999999988 45899999999999888887754332 111111 111111 1156
Q ss_pred HHHHHcCccceecCCCChhH
Q 015820 203 AEMMACGLATHYSVSEKLPL 222 (399)
Q Consensus 203 ~eA~~~GLv~~vv~~~~l~~ 222 (399)
+-.++.|+||.||+..++..
T Consensus 253 EfLlehG~iD~iv~R~elr~ 272 (294)
T COG0777 253 EFLLEHGMIDMIVHRDELRT 272 (294)
T ss_pred HHHHHcCCceeeecHHHHHH
Confidence 66789999999999876653
No 143
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.84 E-value=0.0078 Score=57.16 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=62.7
Q ss_pred HHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCC
Q 015820 122 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLN 201 (399)
Q Consensus 122 l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~ 201 (399)
-+..+.++++|+||.|=|---+||+-=...+|.|++-++++++. +.|.++++. |.+-.-+ +.+ +.....|+
T Consensus 180 nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsI-LWkD~~k-a~e-AAe~mkit 250 (317)
T COG0825 180 NLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASI-LWKDASK-AKE-AAEAMKIT 250 (317)
T ss_pred HHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhh-hhcChhh-hHH-HHHHcCCC
Confidence 34456789999999999887666665556689999999999883 455555544 4442222 222 23445899
Q ss_pred HHHHHHcCccceecCC
Q 015820 202 GAEMMACGLATHYSVS 217 (399)
Q Consensus 202 A~eA~~~GLv~~vv~~ 217 (399)
|++.+++|+||.|++.
T Consensus 251 a~dLk~lgiID~II~E 266 (317)
T COG0825 251 AHDLKELGIIDGIIPE 266 (317)
T ss_pred HHHHHhCCCcceeccC
Confidence 9999999999999985
No 144
>PRK10949 protease 4; Provisional
Probab=94.72 E-value=0.093 Score=56.09 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcce
Q 015820 61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (399)
Q Consensus 61 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~ 140 (399)
-.+.++.++|+.+..|+.|++|||.-.+. .|..+..+ +.+.+.+..+....|||||.-+.+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~----------------~eI~~ai~~fk~sGKpVvA~~~~~ 155 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM----------------QYIGKALREFRDSGKPVYAVGDSY 155 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH----------------HHHHHHHHHHHHhCCeEEEEecCc
Confidence 34568899999999999999999987631 12222211 122334444556789999964444
Q ss_pred eecccccccccCCeEEEeCceEEecc
Q 015820 141 TMGGGAGVSIPGTFRVACGKTVFATP 166 (399)
Q Consensus 141 a~GgG~~Lal~cD~ria~~~a~f~~p 166 (399)
--+|.-||.+||-+++.+.+.+++.
T Consensus 156 -~s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 156 -SQGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred -cchhhhhhhhCCEEEECCCceEEEe
Confidence 4578999999999999998777643
No 145
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=93.96 E-value=0.5 Score=49.34 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=91.3
Q ss_pred EEEcCCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 015820 47 AILNRPSAL-NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (399)
Q Consensus 47 Itlnrp~~~-Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (399)
|.-|+|... -+++.+-.....+.++.++. -++-+|.|.-. .|++... ..+.....+...+++.+
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-----pGf~~g~---------~~E~~g~~~~ga~~~~a 362 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-----PGFMPGP---------EAERAGIIRAGARLLYA 362 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-----CEB--SH---------HHHHTTHHHHHHHHHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-----ccccccc---------hhhhcchHHHHHHHHHH
Confidence 344555422 26999999999999888876 45777877754 3333322 22233445667778888
Q ss_pred HccCCCcEEEEEcceeecccccccccC----CeEEEeCceEEeccccccCccCCCchhHHHhhcchH---------HH--
Q 015820 126 LGTHLKPHVAILNGVTMGGGAGVSIPG----TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---------LG-- 190 (399)
Q Consensus 126 i~~~~kP~IAav~G~a~GgG~~Lal~c----D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~---------~a-- 190 (399)
+..+.+|+|..|-|.++|||..-.... |++++.+++.++ +.++.|+...+.+.--. .+
T Consensus 363 ~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~ 435 (493)
T PF01039_consen 363 LAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQR 435 (493)
T ss_dssp HHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHH
T ss_pred HHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHH
Confidence 999999999999999999877444444 677666666554 44444444433322110 01
Q ss_pred -HHHHH-cCCCCCHHHHHHcCccceecCCCChhH
Q 015820 191 -EFLAL-TGAKLNGAEMMACGLATHYSVSEKLPL 222 (399)
Q Consensus 191 -~~l~l-tG~~i~A~eA~~~GLv~~vv~~~~l~~ 222 (399)
..+-- .-...++..+...|++|.|+++.+...
T Consensus 436 ~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~ 469 (493)
T PF01039_consen 436 AEKIAEYEDELSSPYRAASRGYVDDIIDPAETRK 469 (493)
T ss_dssp HHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHH
T ss_pred HHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHH
Confidence 01111 111247889999999999999977654
No 146
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=93.83 E-value=0.29 Score=50.78 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=62.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccC
Q 015820 50 NRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH 129 (399)
Q Consensus 50 nrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 129 (399)
+.+.+.-++..-....+..+.+.+.++....+.+..|. |+.+.+-. ..+.- +..+..-...+...
T Consensus 99 D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsg------Gari~~~v--------~~l~g-~g~iF~~~a~~Sg~ 163 (526)
T COG4799 99 DFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSG------GARIQEGV--------PSLAG-YGRIFYRNARASGV 163 (526)
T ss_pred cCceecccccccccchHHHHHHHHHHcCCCEEEEEccc------ccccccCc--------ccccc-chHHHHHHHHhccC
Confidence 34556778887777888888888777654444454543 33333211 00001 11111222234444
Q ss_pred CCcEEEEEcceeecccccccccCCeEEEeCce
Q 015820 130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161 (399)
Q Consensus 130 ~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a 161 (399)
+|.|++|.|+|.|||+-+..+||++|+.++.
T Consensus 164 -IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 164 -IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred -CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 9999999999999999999999999999984
No 147
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=93.40 E-value=0.13 Score=52.10 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=52.2
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhccCCCCcHHhhHhhh---hccCCCCCCCCC
Q 015820 293 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR---MVDRDIAPKWSP 363 (399)
Q Consensus 293 ~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~s~d~~egv~af---l~ek~r~p~~~~ 363 (399)
+.+.+++..+|.++..+|+.++.. ..+....+..+...+..++. ++|+.|++.+| . +| |.|.|.-
T Consensus 228 ~~~~~i~~~~p~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~---~~d~~ei~~al~~~~-~k-r~~~wa~ 295 (401)
T PLN02157 228 EQLKKLLTDDPSVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFS---HDTVEEIIDSLEIEA-GR-RKDTWCI 295 (401)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhc---CCCHHHHHHHHHhhh-cc-cchHHHH
Confidence 457788888999999999999865 24456777777777777776 89999999999 6 77 7888853
No 148
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=91.88 E-value=2.1 Score=45.46 Aligned_cols=144 Identities=14% Similarity=0.082 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEE
Q 015820 56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (399)
Q Consensus 56 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 135 (399)
-+++.+-.....+.++.++. -++-+|.|.-..+ |..|.+-.. .-..+...+++.++....+|.|+
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~-------------~G~~~~~a~l~~A~a~~~VP~is 444 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEA-------------SGIAKAGAKMVMAVACAKVPKIT 444 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHH-------------hhHHHHHHHHHHHHHhCCCCEEE
Confidence 35778888888888887765 4566777765433 444433221 23456677788888999999999
Q ss_pred EEcceeecccccccc----cCCeEEEeCceEEeccccccCccCCCchhHHHhhc-c------h------HH-H-HH-H-H
Q 015820 136 ILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-P------G------HL-G-EF-L-A 194 (399)
Q Consensus 136 av~G~a~GgG~~Lal----~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-~------g------~~-a-~~-l-~ 194 (399)
.|-|.++|+|..-.. ..|++++.+++ .+|+.++-|+...+.+. + | .. + ++ + -
T Consensus 445 vi~g~a~G~g~~aM~g~~~~~d~~~awp~A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (569)
T PLN02820 445 IIVGGSFGAGNYGMCGRAYSPNFLFMWPNA-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVE 517 (569)
T ss_pred EEECCcchHHHHHhcCcCCCCCEEEECCCC-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHH
Confidence 999999998653332 45666665554 55666666666555431 1 0 00 0 00 0 1
Q ss_pred HcCCCCCHHHHHHcCccceecCCCChh
Q 015820 195 LTGAKLNGAEMMACGLATHYSVSEKLP 221 (399)
Q Consensus 195 ltG~~i~A~eA~~~GLv~~vv~~~~l~ 221 (399)
..-+..++-.|-..|+||+|+++.+..
T Consensus 518 ~~~~~~~p~~aa~~~~vD~VIdP~dTR 544 (569)
T PLN02820 518 AYEREANPYYSTARLWDDGVIDPADTR 544 (569)
T ss_pred HHHHhCCHHHHHHcCCcCcccCHHHHH
Confidence 122245677788999999999986543
No 149
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.7 Score=43.37 Aligned_cols=131 Identities=13% Similarity=0.059 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEe--cCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEE
Q 015820 57 ALNTNMGAKLNKLFKAWENDPNIGFVSMK--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV 134 (399)
Q Consensus 57 al~~~~~~eL~~~l~~~~~d~~v~~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 134 (399)
.++.++-+.+...|-.++.++.-|=+.+. +.|+.-.+|+ .++.++..+.-||-
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtagl-------------------------AIYDtMq~ik~~V~ 154 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGL-------------------------AIYDTMQYIKPDVS 154 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhh-------------------------hHHHHHHhhCCCce
Confidence 36778888877777777765544544433 3333332222 13334444555555
Q ss_pred EEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHH------------HHcC-----
Q 015820 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL------------ALTG----- 197 (399)
Q Consensus 135 Aav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l------------~ltG----- 197 (399)
..+=|.|.+-|.-|..+ ++..-++++|..++=+.-+.|+..-=..=+-.+|+++ --||
T Consensus 155 Tic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~ 229 (275)
T KOG0840|consen 155 TICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEV 229 (275)
T ss_pred eeehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 55557777666555443 3456667777776655333222210000000012222 2244
Q ss_pred --------CCCCHHHHHHcCccceecCC
Q 015820 198 --------AKLNGAEMMACGLATHYSVS 217 (399)
Q Consensus 198 --------~~i~A~eA~~~GLv~~vv~~ 217 (399)
+.++|+||++.||||+|++.
T Consensus 230 i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 230 IEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 44899999999999999974
No 150
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=66.30 E-value=48 Score=34.81 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=75.3
Q ss_pred EEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHH
Q 015820 48 ILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL 126 (399)
Q Consensus 48 tlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 126 (399)
.=|.|. ..-+|+.+-...-.+.++ +....++-.|.|.-. ..|..|-+-.. ....+...+++.++
T Consensus 329 IANqp~~~~G~l~~~sa~KaArFI~-~cd~~~iPlv~L~d~-pGFm~G~~~E~-------------~giik~Gakl~~A~ 393 (526)
T COG4799 329 IANQPRHLGGVLDIDSADKAARFIR-LCDAFNIPLVFLVDT-PGFMPGTDQEY-------------GGIIKHGAKLLYAV 393 (526)
T ss_pred EecCccccccccchHHHHHHHHHHH-hhhccCCCeEEEeCC-CCCCCChhHHh-------------ChHHHhhhHHHhhH
Confidence 344554 345788888888888774 444445777777654 45777665432 33456677899999
Q ss_pred ccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccccccCccCCCchhHHHh
Q 015820 127 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS 183 (399)
Q Consensus 127 ~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~ 183 (399)
....+|.|..|-|.++|||..-...=.+- ++-.|..|..++|+.-+-|+...+.
T Consensus 394 aeatVPkitvI~rkayGga~~~M~~~~~~---~~~~~AwP~a~iaVMG~egAv~i~~ 447 (526)
T COG4799 394 AEATVPKITVITRKAYGGAYYVMGGKALG---PDFNYAWPTAEIAVMGPEGAVSILY 447 (526)
T ss_pred hhccCCeEEEEecccccceeeeecCccCC---CceeEecCcceeeecCHHHHHHHHH
Confidence 99999999999999999987443322111 3444555666666544444444444
No 151
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=65.64 E-value=56 Score=33.49 Aligned_cols=148 Identities=15% Similarity=0.115 Sum_probs=92.9
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 015820 47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125 (399)
Q Consensus 47 Itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (399)
|.-|+|+ ..-.|..+.-....+.++... ...+-.|.|...++ |-.|.+....+ +.+....++.+
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G-fm~g~~~e~~g-------------IaK~gAklv~a 417 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG-FMVGRAAEAGG-------------IAKHGAKLVYA 417 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC-ccccchhhhhc-------------hhhhhhhhhhh
Confidence 3345554 334566665566666655554 44577888877766 88888876533 23344567788
Q ss_pred HccCCCcEEEEEcceeeccccc---ccccCCeEEEeCceEEeccccccCccCCCchhHHHhhc-----chH--HHHHHHH
Q 015820 126 LGTHLKPHVAILNGVTMGGGAG---VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-----PGH--LGEFLAL 195 (399)
Q Consensus 126 i~~~~kP~IAav~G~a~GgG~~---Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-----~g~--~a~~l~l 195 (399)
+....+|-|..+.|.++||-.. ..++-|+.++.+.|++++-..+ ++.-.|.+. ... ...+..
T Consensus 418 ~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~~~~~~~E~f- 489 (536)
T KOG0540|consen 418 VACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVALKAPYIEKF- 489 (536)
T ss_pred hhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhhhcchHHHHh-
Confidence 8889999999999999997554 5677788888888877643221 111122222 222 122322
Q ss_pred cCCCCCHHHHHHcCccceecCCCChh
Q 015820 196 TGAKLNGAEMMACGLATHYSVSEKLP 221 (399)
Q Consensus 196 tG~~i~A~eA~~~GLv~~vv~~~~l~ 221 (399)
|.++. |...|++|.|+++.+..
T Consensus 490 -~npy~---a~~Rg~~D~II~p~~tR 511 (536)
T KOG0540|consen 490 -GNPYY---AAARGWDDGIIDPSDTR 511 (536)
T ss_pred -cCccH---HHHhhccccccChhHhh
Confidence 65554 45678999999987653
No 152
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=61.60 E-value=13 Score=38.14 Aligned_cols=81 Identities=6% Similarity=-0.005 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEE
Q 015820 58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (399)
Q Consensus 58 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 137 (399)
-+.....++..+|+.+...+++.+|||.=.|+++ -||..|.. ..+.++++.+|.|||++|
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~---eDL~~Fn~-----------------e~~~rai~~~~~Pvis~i 226 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVGRGGGSL---EDLWSFND-----------------EKVARAIFLSKIPIISAV 226 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCH---HHhhhcCc-----------------HHHHHHHHcCCCCEEEec
Confidence 4556678888888888876556777665433322 24433321 247788999999999977
Q ss_pred cceeecccccccccCCeEEEeCc
Q 015820 138 NGVTMGGGAGVSIPGTFRVACGK 160 (399)
Q Consensus 138 ~G~a~GgG~~Lal~cD~ria~~~ 160 (399)
. |-.- -.-.=+++|.|..|+.
T Consensus 227 G-He~D-~ti~D~vAd~ra~TPt 247 (432)
T TIGR00237 227 G-HETD-FTISDFVADLRAPTPS 247 (432)
T ss_pred C-cCCC-ccHHHHhhhccCCCcH
Confidence 2 2211 0112345666666653
No 153
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=60.20 E-value=28 Score=33.55 Aligned_cols=74 Identities=26% Similarity=0.394 Sum_probs=46.8
Q ss_pred eeCCEEEEEEcCCCCCCCCCHHHHHHHH-----------------------HHHHHHhcCCCceEEEEecCCCCcccCCC
Q 015820 40 GKANSRMAILNRPSALNALNTNMGAKLN-----------------------KLFKAWENDPNIGFVSMKGSGRAFCAGGD 96 (399)
Q Consensus 40 ~~~~v~~Itlnrp~~~Nal~~~~~~eL~-----------------------~~l~~~~~d~~v~~vVltg~g~~F~aG~D 96 (399)
+.++|++|- | .-.|+.++..+|. ++|+.+++||..++||+-|. -|.+
T Consensus 144 ~~G~IGiVS--r---SGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGE-----iGG~ 213 (293)
T COG0074 144 KPGNIGIVS--R---SGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGE-----IGGP 213 (293)
T ss_pred cCCceEEEe--c---CcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEec-----CCCc
Confidence 356677652 2 3457777777766 67888889999999999887 1222
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceee
Q 015820 97 IVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (399)
Q Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 142 (399)
- .+...++.. . ....|||||++-|.+.
T Consensus 214 a-----------Ee~AA~~i~-------~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 214 A-----------EEEAAEYIK-------A-NATRKPVVAYIAGRTA 240 (293)
T ss_pred H-----------HHHHHHHHH-------H-hccCCCEEEEEeccCC
Confidence 2 122223222 2 2344999999998754
No 154
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=52.97 E-value=28 Score=33.91 Aligned_cols=80 Identities=8% Similarity=0.084 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHhcCC---CceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEE
Q 015820 59 NTNMGAKLNKLFKAWENDP---NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA 135 (399)
Q Consensus 59 ~~~~~~eL~~~l~~~~~d~---~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 135 (399)
+.....++..+|+.+...+ .+.+|||.=.||++ .||..|. -..+.+++..++.|||+
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~---eDL~~FN-----------------~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI---EDLWAFN-----------------DEEVARAIAASPIPVIS 112 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCCCCh---HHhcccC-----------------hHHHHHHHHhCCCCEEE
Confidence 4455688888888887654 56666664332221 1333332 13478889999999999
Q ss_pred EEcceeecccccccccCCeEEEeCc
Q 015820 136 ILNGVTMGGGAGVSIPGTFRVACGK 160 (399)
Q Consensus 136 av~G~a~GgG~~Lal~cD~ria~~~ 160 (399)
+| ||-.=- .-.=++||+|..|++
T Consensus 113 aI-GHe~D~-ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 113 AI-GHETDF-TIADFVADLRAPTPT 135 (319)
T ss_pred ec-CCCCCc-hHHHHHHHhhCCCHH
Confidence 77 232211 112244556655553
No 155
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=52.43 E-value=38 Score=33.29 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.1
Q ss_pred cCCCcEEEEEcceee
Q 015820 128 THLKPHVAILNGVTM 142 (399)
Q Consensus 128 ~~~kP~IAav~G~a~ 142 (399)
...||||+.+-|..-
T Consensus 250 ~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 250 PIKKPVVSFIAGITA 264 (317)
T ss_pred cCCCcEEEEEecCCC
Confidence 368999999998753
No 156
>smart00250 PLEC Plectin repeat.
Probab=51.62 E-value=12 Score=24.34 Aligned_cols=18 Identities=39% Similarity=0.470 Sum_probs=16.9
Q ss_pred cCCCCCHHHHHHcCccce
Q 015820 196 TGAKLNGAEMMACGLATH 213 (399)
Q Consensus 196 tG~~i~A~eA~~~GLv~~ 213 (399)
||++++-.||.+.||++.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 157
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=50.06 E-value=47 Score=28.39 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcce
Q 015820 65 KLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140 (399)
Q Consensus 65 eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~ 140 (399)
.+.+.++.+..||+.++|++.-++ ..|- +.+.+..+..... ||||+..-|.
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~-----~~d~-------------------~~f~~~~~~a~~~-KPVv~lk~Gr 91 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG-----IGDG-------------------RRFLEAARRAARR-KPVVVLKAGR 91 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-------S-H-------------------HHHHHHHHHHCCC-S-EEEEE---
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC-----CCCH-------------------HHHHHHHHHHhcC-CCEEEEeCCC
Confidence 456778888889999999988764 0011 1222344455555 9999999887
No 158
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=45.13 E-value=75 Score=24.98 Aligned_cols=51 Identities=8% Similarity=0.005 Sum_probs=35.1
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG 88 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g 88 (399)
.-.+.++..+++.+|++..+ ++......+.+.+..+..++..+.|++--.+
T Consensus 2 ~~~i~~~~~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 2 NLNIETEVQEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred ceEEEEEEECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 45677888999999999764 4444456666666655544567788887665
No 159
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=42.58 E-value=9 Score=25.97 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.4
Q ss_pred HcCCCCCHHHHHHcCccce
Q 015820 195 LTGAKLNGAEMMACGLATH 213 (399)
Q Consensus 195 ltG~~i~A~eA~~~GLv~~ 213 (399)
-||++++-++|.+.||+|.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 3889999999999999986
No 160
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.64 E-value=36 Score=34.87 Aligned_cols=79 Identities=8% Similarity=0.047 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEc
Q 015820 59 NTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN 138 (399)
Q Consensus 59 ~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~ 138 (399)
+.....++..+|+.+.... +.+|||.=.|++ =.||..|.+ ..+.+++..++.|||++|
T Consensus 174 G~~A~~~i~~al~~~~~~~-~Dviii~RGGGS---~eDL~~Fn~-----------------e~v~~ai~~~~~Pvis~I- 231 (438)
T PRK00286 174 GEGAAASIVAAIERANARG-EDVLIVARGGGS---LEDLWAFND-----------------EAVARAIAASRIPVISAV- 231 (438)
T ss_pred CccHHHHHHHHHHHhcCCC-CCEEEEecCCCC---HHHhhccCc-----------------HHHHHHHHcCCCCEEEec-
Confidence 4455788888888887643 455555322221 124443321 247788999999999977
Q ss_pred ceeecccccccccCCeEEEeCc
Q 015820 139 GVTMGGGAGVSIPGTFRVACGK 160 (399)
Q Consensus 139 G~a~GgG~~Lal~cD~ria~~~ 160 (399)
||-.= =.-.=++||.|..|+.
T Consensus 232 GHE~D-~tl~D~vAd~ra~TPt 252 (438)
T PRK00286 232 GHETD-FTIADFVADLRAPTPT 252 (438)
T ss_pred cCCCC-ccHHHHhhhccCCChH
Confidence 23221 1122345666666654
No 161
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=40.44 E-value=30 Score=32.41 Aligned_cols=145 Identities=12% Similarity=0.000 Sum_probs=79.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEE--EEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCc
Q 015820 55 LNALNTNMGAKLNKLFKAWENDPNIGFV--SMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKP 132 (399)
Q Consensus 55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP 132 (399)
...++.+.-..|..++.+.-.+..-+.| |+-..|..++-= .+ .--...++....+.+...+...=|
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grr---eE---------llGi~~alAhla~a~a~AR~~GHp 107 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRR---EE---------LLGINQALAHLAKAYALARLAGHP 107 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchH---HH---------HhhHHHHHHHHHHHHHHHHHcCCC
Confidence 5778877777777665544333222322 222223222210 00 011234455556666677788999
Q ss_pred EEEEEcceeecccc-cccccCCeEEEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCC--CCHHHHHHcC
Q 015820 133 HVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAK--LNGAEMMACG 209 (399)
Q Consensus 133 ~IAav~G~a~GgG~-~Lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~--i~A~eA~~~G 209 (399)
||+.|-|.+++||| ...+.+|-.|+-+++ .+-..+-. +..+..++.=..-.++.-+--. .+.+--.++|
T Consensus 108 vI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga-------~i~vM~~~-s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG 179 (234)
T PF06833_consen 108 VIGLVYGKAMSGAFLAHGLQANRLIALPGA-------MIHVMGKP-SAARVTKRPVEELEELAKSVPVFAPGIENYAKLG 179 (234)
T ss_pred eEEEEecccccHHHHHHHHHhcchhcCCCC-------eeecCChH-HhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhc
Confidence 99999999999988 777888888876533 32222211 2222332211112233322222 3456667889
Q ss_pred ccceecCCCC
Q 015820 210 LATHYSVSEK 219 (399)
Q Consensus 210 Lv~~vv~~~~ 219 (399)
.++++.+.+.
T Consensus 180 ~l~~l~~~~~ 189 (234)
T PF06833_consen 180 ALDELWDGDL 189 (234)
T ss_pred cHHHHhcccc
Confidence 9999888543
No 162
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=35.49 E-value=79 Score=27.60 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceee
Q 015820 65 KLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (399)
Q Consensus 65 eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 142 (399)
...++|..+.+||++++|++-+.+++=+. . +....+...+..... ....+|+|+.|-|-.-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~----~-----------~~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~~ 120 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC----E-----------DPAAGLIPAIKEAKA--EGRKKPVVARVCGTNA 120 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH----H-----------HHHHHHHHHHSHCTH--TTT-SEEEEEEESTTC
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch----H-----------HHHHHHHHHHHhccc--cCCCCcEEEEeeeecC
Confidence 34567777888999999999886432111 1 111111221111110 3478999999988654
No 163
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=33.02 E-value=62 Score=33.23 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEE
Q 015820 60 TNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL 137 (399)
Q Consensus 60 ~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 137 (399)
...-.++.++++.++..+++.++|+.=.|+ -+.++ ..|.+ ..+.++++.+..|+|++|
T Consensus 175 ~~A~~eIv~aI~~an~~~~~DvlIVaRGGG------SiEDL------------W~FNd--E~vaRAi~~s~iPvISAV 232 (440)
T COG1570 175 EGAAEEIVEAIERANQRGDVDVLIVARGGG------SIEDL------------WAFND--EIVARAIAASRIPVISAV 232 (440)
T ss_pred CCcHHHHHHHHHHhhccCCCCEEEEecCcc------hHHHH------------hccCh--HHHHHHHHhCCCCeEeec
Confidence 344677888888888877777777643222 22222 11111 247788999999999987
No 164
>PLN02522 ATP citrate (pro-S)-lyase
Probab=32.18 E-value=1.1e+02 Score=32.93 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCceEEEEecC-CCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceee
Q 015820 66 LNKLFKAWENDPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142 (399)
Q Consensus 66 L~~~l~~~~~d~~v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 142 (399)
+.+.|+.+.+||+.++|++.+. |. -| .. ++.. ..+... ..||||+.+-|.+-
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg-----~~------------e~---~f~e----a~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGG-----RD------------EY---SLVE----ALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCc-----hh------------HH---HHHH----HHHHhc-CCCCEEEEeccCCC
Confidence 3455666667777777777765 31 00 11 1111 222222 68999999999876
No 165
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=29.78 E-value=2.2e+02 Score=22.22 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=34.0
Q ss_pred EEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCc
Q 015820 37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF 91 (399)
Q Consensus 37 ~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F 91 (399)
.++..+++.++.+..| ++..-..++.+.+..+-..+..+.+||--++-.|
T Consensus 2 ~~~~~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~ 51 (106)
T TIGR02886 2 EFEVKGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKNVTF 51 (106)
T ss_pred eEEEECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcE
Confidence 4577889999999776 4555666677776655433457888887665333
No 166
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=28.58 E-value=99 Score=28.68 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=42.8
Q ss_pred cEEEEeeCCEEEEEEcCCCC-------CCCCCHHHHH---HHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHH
Q 015820 35 QVLVEGKANSRMAILNRPSA-------LNALNTNMGA---KLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLY 101 (399)
Q Consensus 35 ~v~~~~~~~v~~Itlnrp~~-------~Nal~~~~~~---eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~ 101 (399)
++.-+.+..|+++||..... .-++...... .+...+..+-.||++|.+|++|.. +..-+|--|..+.
T Consensus 18 Y~vGd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TENlGIEKvI~NvisNpNIRflilcG~Ev~GH~tGqsl~aL~ 95 (225)
T PRK00964 18 YVVGDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTENLGIEKVIANVISNPNIRFLILCGSEVQGHITGQSLKALH 95 (225)
T ss_pred eEeCCCCCceEEEEccccccccchhhcCceeecccccccccHHHHHHHHhcCCCceEEEEecCccCCccccHHHHHHH
Confidence 44444556799999986431 1223333322 256677777889999999999986 5555565555443
No 167
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=28.55 E-value=92 Score=19.28 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHH
Q 015820 272 VEEIIDSLESEASLINDPWCGSTLRL 297 (399)
Q Consensus 272 ~~ei~~~l~~~~~~~~~~~a~~~a~~ 297 (399)
+++|-.+++++.+.++..|..+.++.
T Consensus 2 leQI~~a~~~~~~~NFSaWV~dACr~ 27 (30)
T PF13132_consen 2 LEQIEIALEQEGSGNFSAWVKDACRR 27 (30)
T ss_pred hHHHHHHHHhccCcChHHHHHHHHHH
Confidence 46677778888888999998776653
No 168
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=26.99 E-value=1.6e+02 Score=28.64 Aligned_cols=12 Identities=50% Similarity=0.728 Sum_probs=10.5
Q ss_pred CCcEEEEEccee
Q 015820 130 LKPHVAILNGVT 141 (399)
Q Consensus 130 ~kP~IAav~G~a 141 (399)
.||+|+..-|..
T Consensus 233 ~KPVV~lk~Grs 244 (300)
T PLN00125 233 EKPVVAFIAGLT 244 (300)
T ss_pred CCCEEEEEecCC
Confidence 899999988875
No 169
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=25.96 E-value=1.1e+02 Score=31.51 Aligned_cols=110 Identities=20% Similarity=0.196 Sum_probs=62.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHhhhccCCchHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhc-
Q 015820 259 RIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS- 337 (399)
Q Consensus 259 ~~~~i~~~f~~~~~~ei~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~- 337 (399)
...+|++||-+....|+++.|+.-..+ ...|.-+ |.++.-+.+.. ..|.++...++.
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DLn~~--------------E~~~~f~---k~lITLAldrK-----~~ekEMasvllS~ 405 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDLNLP--------------EYNPGFL---KLLITLALDRK-----NSEKEMASVLLSD 405 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHcCCc--------------cccchHH---HHHHHHHhccc-----hhHHHHHHHHHHH
Confidence 356999999999999999988742211 1122222 12222111110 112222221111
Q ss_pred ----cCCCCcHHhhHhhhhccCCCCCCCC---CCCccCC----CHHHHhcccCCCCCCCCCcccChh
Q 015820 338 ----RLISGDFYEGVRARMVDRDIAPKWS---PPSLEQV----SEDMVDRYFSPLSESELDLELPTK 393 (399)
Q Consensus 338 ----~~~s~d~~egv~afl~ek~r~p~~~---~~~~~~v----~~~~v~~~~~~~~~~~~~~~~~~~ 393 (399)
.+.++|+..|..-.+ +. .|+-. +.-..++ ....+|++++|++-++--=+||+.
T Consensus 406 L~~e~fsteDv~~~F~mLL-es--aedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~ 469 (645)
T KOG0403|consen 406 LHGEVFSTEDVEKGFDMLL-ES--AEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPV 469 (645)
T ss_pred hhcccCCHHHHHHHHHHHH-hc--chhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCc
Confidence 124788999988888 44 33321 1222222 457899999999998888888876
No 170
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=25.78 E-value=1.2e+02 Score=32.15 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=44.3
Q ss_pred CCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeeccccccc
Q 015820 77 PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVS 149 (399)
Q Consensus 77 ~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~La 149 (399)
|+.-|+|-|-..=-+-.|.+...+. ..+.+....-+..+.+.+..+.++.+|+|.+||-+..---.++.
T Consensus 323 P~~~VlVaTvraLK~hgg~~~~~l~----~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~ 391 (557)
T PRK13505 323 PDAVVIVATVRALKMHGGVAKDDLK----EENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIA 391 (557)
T ss_pred CCEEEEEeehHHHHHcCCCChhhcc----ccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 4444444443332344555555543 33456666777788888888999999999999977665444443
No 171
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=25.40 E-value=2.6e+02 Score=22.22 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=38.8
Q ss_pred EEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--------ceEEEEecCC
Q 015820 36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--------IGFVSMKGSG 88 (399)
Q Consensus 36 v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~--------v~~vVltg~g 88 (399)
+.++..+++.+++++.| |+......+.+.+..+..... ++.|||--.+
T Consensus 2 ~~~~~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 45778899999999876 778888888888888877654 7899988665
No 172
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=24.49 E-value=5.9e+02 Score=24.79 Aligned_cols=132 Identities=15% Similarity=0.081 Sum_probs=68.0
Q ss_pred ccCCCcEEEEeeCCE---EEEEEcCCCCCCCCCHHHHHHHHHHH-HHHhcCCCceEEEEecC-CCCcccCCCh-hhHHH-
Q 015820 30 DDLCNQVLVEGKANS---RMAILNRPSALNALNTNMGAKLNKLF-KAWENDPNIGFVSMKGS-GRAFCAGGDI-VSLYH- 102 (399)
Q Consensus 30 ~~~~~~v~~~~~~~v---~~Itlnrp~~~Nal~~~~~~eL~~~l-~~~~~d~~v~~vVltg~-g~~F~aG~Dl-~~~~~- 102 (399)
...++.+.+-.+|++ ..+.. .+...|.++++-+.+-...+ .++...+.-++.||-|. .+.|--+-+. ..+..
T Consensus 95 ~~~FDlvi~p~HD~~~~~~Nvl~-t~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~ 173 (311)
T PF06258_consen 95 PRPFDLVIVPEHDRLPRGPNVLP-TLGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQ 173 (311)
T ss_pred ccccCEEEECcccCcCCCCceEe-cccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHH
Confidence 456677777666655 12211 22236999999888866665 44555555566655554 4666555441 11111
Q ss_pred ---hhcc-C-------ChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeEEEeCceEEeccc
Q 015820 103 ---FMNQ-G-------KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167 (399)
Q Consensus 103 ---~~~~-~-------~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe 167 (399)
.... + +...-......+. ..+. +.|-+-..+|.--+-=.++...||.+|+|+++.=.+.|
T Consensus 174 l~~~~~~~~~~~~vttSRRTp~~~~~~L~---~~~~--~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsE 244 (311)
T PF06258_consen 174 LAALAAAYGGSLLVTTSRRTPPEAEAALR---ELLK--DNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSE 244 (311)
T ss_pred HHHHHHhCCCeEEEEcCCCCcHHHHHHHH---Hhhc--CCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHH
Confidence 0000 0 0000111111111 1111 23444334665566667889999999999876533333
No 173
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=23.39 E-value=1.9e+02 Score=20.59 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=30.2
Q ss_pred HHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHH
Q 015820 294 TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREY 329 (399)
Q Consensus 294 ~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~ 329 (399)
+.+-+...++.-++..+..+......++.+.+..|.
T Consensus 20 li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~ 55 (66)
T PF00191_consen 20 LIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKET 55 (66)
T ss_dssp HHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS
T ss_pred hhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhC
Confidence 477888899999999999999988899999888764
No 174
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=22.07 E-value=7.3e+02 Score=24.05 Aligned_cols=128 Identities=12% Similarity=0.088 Sum_probs=71.5
Q ss_pred cCCCcEEEEeeCCE--------EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCChhhHH
Q 015820 31 DLCNQVLVEGKANS--------RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-GRAFCAGGDIVSLY 101 (399)
Q Consensus 31 ~~~~~v~~~~~~~v--------~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~-g~~F~aG~Dl~~~~ 101 (399)
.+++-|.+-.+|.+ -++.||.. .|-++...+....+++.+.--.+.-++-||-|. .+.|.---|-....
T Consensus 108 ~~fDlvivp~HD~~~~~s~~~~Nilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~ 185 (329)
T COG3660 108 NHFDLVIVPYHDWREELSDQGPNILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQF 185 (329)
T ss_pred ccceEEeccchhhhhhhhccCCceeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHH
Confidence 35666666666654 35667665 477899999999999988865665566565555 48887655543321
Q ss_pred -Hh----hccCChHH----HHHHHHHHHHHHHHHccCCCcEEEEEcce--eecccccccccCCeEEEeCceE
Q 015820 102 -HF----MNQGKLEE----CKDFFRTLYSFIYLLGTHLKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTV 162 (399)
Q Consensus 102 -~~----~~~~~~~~----~~~~~~~~~~l~~~i~~~~kP~IAav~G~--a~GgG~~Lal~cD~ria~~~a~ 162 (399)
.. ........ .++.-...+.++.. +.+--.+...|+- -..--+.+..++|+.|++.++.
T Consensus 186 ~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~--~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSi 255 (329)
T COG3660 186 ASLLVKILENQGGSFLISFSRRTPDTVKSILKN--NLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSI 255 (329)
T ss_pred HHHHHHHHHhCCceEEEEeecCCcHHHHHHHHh--ccccCceeEeCCCCCCCCchHHHHhhcceEEEecchh
Confidence 10 00000000 00000111112211 2444456667766 3334567788899999988764
No 175
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=22.02 E-value=2.3e+02 Score=23.64 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHH--hcCCCceEEEEecCC
Q 015820 44 SRMAILNRPSALNAL--N----------TNMGAKLNKLFKAW--ENDPNIGFVSMKGSG 88 (399)
Q Consensus 44 v~~Itlnrp~~~Nal--~----------~~~~~eL~~~l~~~--~~d~~v~~vVltg~g 88 (399)
+..|+.+-|.|+..= + ..++.++.+.+.+. ...+.+++|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 445667778876542 2 35666777777776 556789999999975
No 176
>PRK06091 membrane protein FdrA; Validated
Probab=21.70 E-value=2.3e+02 Score=30.18 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=15.6
Q ss_pred HHHHHHccCCCcEEEEEcceee
Q 015820 121 SFIYLLGTHLKPHVAILNGVTM 142 (399)
Q Consensus 121 ~l~~~i~~~~kP~IAav~G~a~ 142 (399)
+++..++...||||+..-|..-
T Consensus 270 ~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHhhCCCCEEEEEecCCc
Confidence 4444455569999999988643
No 177
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=21.36 E-value=39 Score=31.52 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=68.4
Q ss_pred CceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHccCCCcEEEEEcceeecccccccccCCeE--
Q 015820 78 NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR-- 155 (399)
Q Consensus 78 ~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~Lal~cD~r-- 155 (399)
.+.++++.=.|-.-|.|.--.+=.. -+.+... +....-..++|.-|. +-|..+||.+.+.++++.+
T Consensus 106 ~mnv~ivsYRGYG~S~GspsE~GL~----lDs~avl-------dyl~t~~~~dktkiv-lfGrSlGGAvai~lask~~~r 173 (300)
T KOG4391|consen 106 KMNVLIVSYRGYGKSEGSPSEEGLK----LDSEAVL-------DYLMTRPDLDKTKIV-LFGRSLGGAVAIHLASKNSDR 173 (300)
T ss_pred CceEEEEEeeccccCCCCcccccee----ccHHHHH-------HHHhcCccCCcceEE-EEecccCCeeEEEeeccchhh
Confidence 4667777666655566653322110 0111111 122222345555554 6799999999999999875
Q ss_pred ---EEeCceEEeccccccCccCCCchhHHHhhcchHHHHHHHHcCCCCC---HHHHHHcCccceecCCCC
Q 015820 156 ---VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLN---GAEMMACGLATHYSVSEK 219 (399)
Q Consensus 156 ---ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a~~l~ltG~~i~---A~eA~~~GLv~~vv~~~~ 219 (399)
+.-|++..+.|+.-+-++-+.++.+ ++++.-.. ...+-+.+. -.-..=.|+-|++||+-.
T Consensus 174 i~~~ivENTF~SIp~~~i~~v~p~~~k~-i~~lc~kn---~~~S~~ki~~~~~P~LFiSGlkDelVPP~~ 239 (300)
T KOG4391|consen 174 ISAIIVENTFLSIPHMAIPLVFPFPMKY-IPLLCYKN---KWLSYRKIGQCRMPFLFISGLKDELVPPVM 239 (300)
T ss_pred eeeeeeechhccchhhhhheeccchhhH-HHHHHHHh---hhcchhhhccccCceEEeecCccccCCcHH
Confidence 4467888899988777655544322 33332211 111112222 111223588999999843
No 178
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=21.21 E-value=2.6e+02 Score=26.32 Aligned_cols=54 Identities=7% Similarity=0.077 Sum_probs=40.1
Q ss_pred CCCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCc
Q 015820 32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF 91 (399)
Q Consensus 32 ~~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F 91 (399)
+|..|.+...|.+. .++..+.++.+.+..+...++++... .+++-|+.|.|..|
T Consensus 4 ~~~rillkLsGe~l-----~g~~~~gid~~~i~~~a~~i~~~~~~-g~eV~iVvGGGni~ 57 (238)
T COG0528 4 KYMRILLKLSGEAL-----AGEQGFGIDPEVLDRIANEIKELVDL-GVEVAVVVGGGNIA 57 (238)
T ss_pred ceEEEEEEeeccee-----cCCCCCCCCHHHHHHHHHHHHHHHhc-CcEEEEEECCCHHH
Confidence 45566676666654 24445779999999999999999865 57888888877555
No 179
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=21.17 E-value=82 Score=25.68 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=29.0
Q ss_pred CCCCCCCccCCCHHHHhcccCCCCC------CCCCcccChhhhhcc
Q 015820 359 PKWSPPSLEQVSEDMVDRYFSPLSE------SELDLELPTKLREAF 398 (399)
Q Consensus 359 p~~~~~~~~~v~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~ 398 (399)
+.|..++.++++.+.++.++..-++ ++.-.-+|++++++|
T Consensus 30 ~~w~~~~~~~l~~e~l~~l~~~~peiliiGTG~~~~~~~~~~~~~l 75 (109)
T cd05560 30 TDWPVARFEDLTAAHFEALLALQPEVILLGTGERQRFPPPALLAPL 75 (109)
T ss_pred eccccCCcccCCHHHHHHHHhcCCCEEEEecCCCCCcCCHHHHHHH
Confidence 4499999999999999999986322 133334488887765
No 180
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=20.95 E-value=3.6e+02 Score=26.31 Aligned_cols=79 Identities=10% Similarity=0.091 Sum_probs=45.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 015820 44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI 123 (399)
Q Consensus 44 v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (399)
|-.+++......| -+.+-+..+...++.+.. ....++||||+.-.--.--|.. ++..+.+++
T Consensus 67 v~~~~~~~h~~~~-~~~~hl~~~y~~~~~i~~-~~~DG~IITGAp~e~~~fedv~----------------YW~El~~i~ 128 (302)
T PRK05368 67 IHLLRIDSHESKN-TPAEHLENFYCTFEDIKD-EKFDGLIITGAPVEQLPFEDVD----------------YWDELKEIL 128 (302)
T ss_pred EEEEecCCcCCCC-CCHHHHHHhccCHHHhcc-CCCCEEEEcCCCCCCccCCCCc----------------hHHHHHHHH
Confidence 3344444443334 477888999999988864 5688999999852111111111 122344455
Q ss_pred HHHccCCCcEEEEEcce
Q 015820 124 YLLGTHLKPHVAILNGV 140 (399)
Q Consensus 124 ~~i~~~~kP~IAav~G~ 140 (399)
..+....+|++..|-|+
T Consensus 129 ~w~~~~~~s~LgICwGa 145 (302)
T PRK05368 129 DWAKTHVTSTLFICWAA 145 (302)
T ss_pred HHHHHcCCCEEEEcHHH
Confidence 55555678888765544
No 181
>PRK14556 pyrH uridylate kinase; Provisional
Probab=20.20 E-value=2.5e+02 Score=26.58 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=41.3
Q ss_pred CCcEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCccc
Q 015820 33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93 (399)
Q Consensus 33 ~~~v~~~~~~~v~~Itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~a 93 (399)
|..|.+...|.+. . +++.+.++.+.+..+.+.+..+.+. .+++.|+.|.|..|..
T Consensus 15 ~~rvllKlsGe~l----~-~~~~~~~d~~~~~~~a~~i~~~~~~-g~~i~iVvGGGni~Rg 69 (249)
T PRK14556 15 LKRILLKLSGESL----S-ADQGFGINVESAQPIINQIKTLTNF-GVELALVVGGGNILRG 69 (249)
T ss_pred hCEEEEEEehhhC----c-CCCCCCcCHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHhC
Confidence 5567776666543 2 3345789999999999999998754 4789999998877763
Done!