Your job contains 1 sequence.
>015821
MMDKKKSEDNNISAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQHRESQSAENESIFN
PMNSDSLDSNNSELKKIKKTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPRSILGFEP
NGTIENEIKKEHSSNVGSESYLNRQKQNSNFSVEGKKRSENKKTKKRKRDDVEKDYVEKK
YGVIAKEEEGKKVGVGEKRKKADNETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKK
TLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA
LAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGL
NDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015821
(399 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172937 - symbol:AT5G46840 species:3702 "Arabi... 705 3.2e-77 2
ZFIN|ZDB-GENE-040718-77 - symbol:rbm34 "RNA binding motif... 300 1.2e-26 1
DICTYBASE|DDB_G0289941 - symbol:DDB_G0289941 "Nucleolar p... 269 1.8e-25 2
CGD|CAL0002615 - symbol:orf19.809 species:5476 "Candida a... 280 3.5e-24 1
POMBASE|SPAC16E8.06c - symbol:nop12 "RNA-binding protein ... 275 1.0e-23 1
MGI|MGI:1098653 - symbol:Rbm34 "RNA binding motif protein... 264 7.8e-23 1
UNIPROTKB|P42696 - symbol:RBM34 "RNA-binding protein 34" ... 266 9.9e-23 1
UNIPROTKB|F1NIM5 - symbol:RBM34 "Uncharacterized protein"... 263 1.0e-22 1
UNIPROTKB|F1RGW8 - symbol:RBM34 "Uncharacterized protein"... 261 3.4e-22 1
UNIPROTKB|E2R3E1 - symbol:RBM34 "Uncharacterized protein"... 261 3.7e-22 1
UNIPROTKB|J9NU83 - symbol:RBM34 "Uncharacterized protein"... 256 5.5e-22 1
RGD|1310161 - symbol:Rbm34 "RNA binding motif protein 34"... 257 2.0e-21 1
SGD|S000005401 - symbol:NOP12 "Protein involved in pre-rR... 205 2.4e-18 3
WB|WBGene00008688 - symbol:F11A10.7 species:6239 "Caenorh... 231 2.2e-17 1
UNIPROTKB|A2A2V2 - symbol:RBM34 "RNA-binding protein 34" ... 168 5.7e-13 2
FB|FBgn0032620 - symbol:CG12288 species:7227 "Drosophila ... 190 2.7e-12 1
UNIPROTKB|A8NJ74 - symbol:RBM34 "Uncharacterized protein"... 156 5.4e-09 1
ASPGD|ASPL0000048939 - symbol:AN1452 species:162425 "Emer... 124 7.7e-08 2
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 116 9.7e-05 2
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 107 0.00032 2
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 107 0.00032 2
UNIPROTKB|I3LLT9 - symbol:ZCRB1 "Uncharacterized protein"... 94 0.00054 1
>TAIR|locus:2172937 [details] [associations]
symbol:AT5G46840 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0009560 "embryo sac egg
cell differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB022221
KO:K14837 OMA:AEGHSKS EMBL:BT009688 EMBL:AK228177 IPI:IPI00521492
RefSeq:NP_199496.1 UniGene:At.29928 ProteinModelPortal:Q9LUK6
SMR:Q9LUK6 IntAct:Q9LUK6 PRIDE:Q9LUK6 EnsemblPlants:AT5G46840.1
GeneID:834728 KEGG:ath:AT5G46840 TAIR:At5g46840 InParanoid:Q9LUK6
PhylomeDB:Q9LUK6 ProtClustDB:CLSN2686334 Genevestigator:Q9LUK6
Uniprot:Q9LUK6
Length = 501
Score = 705 (253.2 bits), Expect = 3.2e-77, Sum P(2) = 3.2e-77
Identities = 134/191 (70%), Positives = 164/191 (85%)
Query: 204 NETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII 263
+E D +V + EGFDDE KLLRT+FVGNLPLKVKKK ++KEF KFGE++SVRIRSVPI+
Sbjct: 151 DEVADTMVSK--EGFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIV 208
Query: 264 DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRK 323
D+K RKGAI+ KQINE A SVHAY+VF++EQS A+LA NM++I GNH+R+DRACPPRK
Sbjct: 209 DSKRTRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRK 268
Query: 324 KLKG-EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382
K KG +D LYD K+TVF+GNLPFDVKDEE+YQLF G ++LE+S+EAVRVIR PH+ +GK
Sbjct: 269 KQKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGK 328
Query: 383 GIAYVLFKTRD 393
GIAYVLFKTR+
Sbjct: 329 GIAYVLFKTRE 339
Score = 91 (37.1 bits), Expect = 3.2e-77, Sum P(2) = 3.2e-77
Identities = 42/158 (26%), Positives = 74/158 (46%)
Query: 2 MDKKKSE----DNNISAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQHRESQSAENES 57
M KKKS+ ++ +IF+TLF G ES+ +SLFS NPF+R ++ Q + S
Sbjct: 1 MGKKKSKVTEPESQNDESQTIFSTLFSG-EVESSGFASLFSADNPFRR--KQPQEIKESS 57
Query: 58 IFNPMXXXXXXXXXXELKKIK----KTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPR 113
I + E ++ KT++ K L D+ G +T+S + + + L+ R
Sbjct: 58 IPDEKKGDKRNAENEEEEEETDLPVKTKKSKKEKKLTDS-GDEKETISEAVEESGLVSKR 116
Query: 114 SILGFEPNGTIENEIK-KEHSSNVGSESYLNRQKQNSN 150
IENE + K++ S E + +++ ++
Sbjct: 117 KK---RKRDEIENEYETKKYGSVEMKEKKVGEKRKKAD 151
Score = 75 (31.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 32/125 (25%), Positives = 57/125 (45%)
Query: 213 RKEEGFDDEGKL--LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRK 270
+K++G DD RT+F+GNLP VK + + + F +++ I +V +I + P
Sbjct: 268 KKQKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLEN-SIEAVRVI--RDPHL 324
Query: 271 GAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACP--PRKKLKGE 328
+ K I AY++FK+ ++ L + +R+ R P P K+ K
Sbjct: 325 N--IGKGI--------AYVLFKTREAANLVLKKGYLKLRERELRISRVKPDTPSKR-KSN 373
Query: 329 DAPLY 333
+ Y
Sbjct: 374 PSEAY 378
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 77/196 (39%), Positives = 113/196 (57%)
Query: 203 DNETEDMLVHRKEEGFDDEG--KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV 260
++E E H+K F+ E K+ RT+FVGNLP KKK L+ F K G I+SVR RSV
Sbjct: 124 EDEEERPTKHKKTVKFNAEERLKMKRTVFVGNLPSSCKKKDLLSVFKKSGVIESVRFRSV 183
Query: 261 PIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVI-GGNHIRLDRAC 319
D + RK A +Q++++ +++AYIVFK E+S AL +N I G +IR+DR
Sbjct: 184 IREDPTMSRKVAAIQRKVHPKKQNINAYIVFKEEESATDALKWNGHEIQAGFYIRVDRVS 243
Query: 320 PPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPH 377
K +D K+++FVGNLP+D+ + + F CG ++EAVR++R
Sbjct: 244 QHSK---------HDHKRSIFVGNLPYDISELPLQNHFQECG------NIEAVRLVRDRD 288
Query: 378 MRVGKGIAYVLFKTRD 393
+GKG YVLF++ D
Sbjct: 289 SGMGKGFGYVLFESPD 304
>DICTYBASE|DDB_G0289941 [details] [associations]
symbol:DDB_G0289941 "Nucleolar protein 12"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0289941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000149 eggNOG:COG0724
KO:K14837 RefSeq:XP_635997.1 ProteinModelPortal:Q54GS2
EnsemblProtists:DDB0188659 GeneID:8627412 KEGG:ddi:DDB_G0289941
InParanoid:Q54GS2 OMA:REIRIFP ProtClustDB:CLSZ2731818
Uniprot:Q54GS2
Length = 481
Score = 269 (99.8 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADS 284
RT+FV N+ L K +K+ K FG+I+S+R RS+P+ RK ++K+ +E ++
Sbjct: 257 RTVFVSNINLNHAKDNELKQLFKPFGQIESIRFRSIPLSSIDGNRKETFIKKEFHEKRET 316
Query: 285 VHAYIVFKS-EQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGN 343
+AYIVFK + +AA N G H+R+D A K K DA KT+F+GN
Sbjct: 317 CNAYIVFKQIADAKKAAKQMNGKEAFGKHLRVDMA--DHKPTKASDA------KTIFIGN 368
Query: 344 LPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDE 394
+P++ ++EE++ +F + V +VR+IR H +GKG YV F T DE
Sbjct: 369 IPYETEEEELFLIF---DKTFGDVVSVRIIRDSHTNIGKGFGYVNFST-DE 415
Score = 45 (20.9 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 74 LKKIKKTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPRSILG----FEPNGTIENE 127
LKK + T ++ N + +A T+ + KS K ++ EPN T NE
Sbjct: 158 LKKSESTNTKQENNEKTTTTASAATTIKKTEKSNKTSLLKAFSSDNQYSEPNVTEINE 215
Score = 38 (18.4 bits), Expect = 9.6e-25, Sum P(2) = 9.6e-25
Identities = 17/70 (24%), Positives = 27/70 (38%)
Query: 13 SAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQHRESQSAENESIFNPMXXXXXXXXXX 72
S P+S TT E+T FS + K+ ES + + E N
Sbjct: 128 SEPTSTPTTTTTTTTKETTQPQKPFSIFDSLKKS--ESTNTKQE---NNEKTTTTASAAT 182
Query: 73 ELKKIKKTRQ 82
+KK +K+ +
Sbjct: 183 TIKKTEKSNK 192
>CGD|CAL0002615 [details] [associations]
symbol:orf19.809 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0002615 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
EMBL:AACQ01000019 EMBL:AACQ01000018 RefSeq:XP_720933.1
RefSeq:XP_721055.1 ProteinModelPortal:Q5AHI7 STRING:Q5AHI7
GeneID:3637230 GeneID:3637377 KEGG:cal:CaO19.809
KEGG:cal:CaO19.8429 KO:K14837 Uniprot:Q5AHI7
Length = 454
Score = 280 (103.6 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 68/170 (40%), Positives = 101/170 (59%)
Query: 226 RTIFVGNLPLKV-KKKTLIKEF---IK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINE 280
RT+FVGN+P V K + K F K +G+IDS+R RS+ D +PRK A +K +++
Sbjct: 159 RTVFVGNVPADVITSKIIAKNFKNLFKHYGKIDSIRYRSISF-DEHLPRKVAFAKKNLHK 217
Query: 281 NADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVF 340
+ DSV+AYIV+K + ++ AA N V +H+R+D P K D K+T+F
Sbjct: 218 SRDSVNAYIVYKEKPASIAAKELNATVFEDHHLRVDHVSHPAPK---------DNKRTIF 268
Query: 341 VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
VGNL F+ K+E +++ F + L+ VE+VR+IR +GKG A V FK
Sbjct: 269 VGNLDFEEKEETLWKYFN--SKLDQDVESVRIIRDSKTNLGKGFALVQFK 316
>POMBASE|SPAC16E8.06c [details] [associations]
symbol:nop12 "RNA-binding protein Nop12 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364
"rRNA processing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC16E8.06c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 KO:K14837
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR PIR:T37786
RefSeq:NP_594218.1 ProteinModelPortal:O13741 STRING:O13741
EnsemblFungi:SPAC16E8.06c.1 GeneID:2542314 KEGG:spo:SPAC16E8.06c
NextBio:20803375 Uniprot:O13741
Length = 438
Score = 275 (101.9 bits), Expect = 1.0e-23, P = 1.0e-23
Identities = 65/172 (37%), Positives = 98/172 (56%)
Query: 226 RTIFVGNLPLKV--KK---KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINE 280
+T+FV NLP +V K K L K F +FG +DS+R RS+ + IPRK A +K+ +
Sbjct: 164 KTVFVNNLPARVVTNKGDYKDLTKHFRQFGAVDSIRFRSLAFSEA-IPRKVAFFEKKFHS 222
Query: 281 NADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVF 340
D+V+AYIVF+ S +AL+ N + H+R+D P + D K+ VF
Sbjct: 223 ERDTVNAYIVFRDSSSARSALSLNGTMFMDRHLRVDSVSHPMPQ---------DTKRCVF 273
Query: 341 VGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
VGNL F+ ++E +++ F CG S++ VR++R P +GKG AY+ FK
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCG------SIDYVRIVRDPKTNLGKGFAYIQFK 319
>MGI|MGI:1098653 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1098653 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 KO:K14837 CTD:23029 HOVERGEN:HBG052167
OrthoDB:EOG46DM2Z EMBL:AK078099 IPI:IPI00225915 RefSeq:NP_766350.2
UniGene:Mm.28199 ProteinModelPortal:Q8C5L7 SMR:Q8C5L7
PhosphoSite:Q8C5L7 PRIDE:Q8C5L7 GeneID:52202 KEGG:mmu:52202
InParanoid:Q8C5L7 NextBio:308648 Bgee:Q8C5L7 CleanEx:MM_RBM34
Genevestigator:Q8C5L7 GermOnline:ENSMUSG00000033931 Uniprot:Q8C5L7
Length = 375
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 69/186 (37%), Positives = 107/186 (57%)
Query: 211 VHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRK 270
V+ +EE +E RT+FVGNLP+ KK L F ++G+++SVR RSV + + +K
Sbjct: 178 VNPEEERLKNE----RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKK 233
Query: 271 GAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPRKKLKGED 329
A ++++ + + S++AY+VFK E + AL N A I G IR+D A + D
Sbjct: 234 LAAIKRKFHPDQKSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLA----SETASRD 289
Query: 330 APLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYV 387
K++VFVGNLP+ ++D + + F CG S+ AVR++R+P VG+G YV
Sbjct: 290 ------KRSVFVGNLPYKIEDSALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYV 337
Query: 388 LFKTRD 393
LF+ D
Sbjct: 338 LFENTD 343
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 266 (98.7 bits), Expect = 9.9e-23, P = 9.9e-23
Identities = 73/197 (37%), Positives = 113/197 (57%)
Query: 204 NETEDMLV-HRKEEGFDDEGKLL---RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRS 259
++TED +V RK+ + E + L RT+FVGNLP+ KK L F ++G+I+SVR RS
Sbjct: 159 DDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRS 218
Query: 260 VPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRA 318
+ + + +K A ++++I+ + +++AY+VFK E + AL N A I G IR+D A
Sbjct: 219 LIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLA 278
Query: 319 CPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHP 376
+ D K++VFVGNLP+ V++ I + F CG S+ AVR++R
Sbjct: 279 ----SETSSRD------KRSVFVGNLPYKVEESAIEKHFLDCG------SIMAVRIVRDK 322
Query: 377 HMRVGKGIAYVLFKTRD 393
+GKG YVLF+ D
Sbjct: 323 MTGIGKGFGYVLFENTD 339
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 68/185 (36%), Positives = 104/185 (56%)
Query: 213 RKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV-PIIDTKIPRKG 271
+K+ ++ K RT+FVGNLP+ + L F ++G+I+S+R RSV P DT + RK
Sbjct: 134 KKKNEAEEMIKNKRTVFVGNLPVDCTAQMLKSLFKEYGQIESIRFRSVVPAEDT-LSRKL 192
Query: 272 AILQKQINENADSVHAYIVFKSEQSTEAALAFNM---AVIGGNHIRLDRACPPRKKLKGE 328
A ++++I+ N ++AY+VFK E+ AL + V G HIR+D A K
Sbjct: 193 AAIKRKIHPNVKYINAYVVFKEERDAVKALNYKRNGTEVASGFHIRVDSAS------KNS 246
Query: 329 DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVL 388
L+D K++VF+GNL +D+ D + + F D V AVR++R +GKG YVL
Sbjct: 247 ---LHDNKRSVFLGNLAYDISDSAVREHFADCGD----VVAVRIVRDRQSGMGKGFGYVL 299
Query: 389 FKTRD 393
F+ D
Sbjct: 300 FENTD 304
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 261 (96.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 70/193 (36%), Positives = 109/193 (56%)
Query: 204 NETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII 263
N + +++EE +E RT+FVGNLP+ KK L F ++G+I+SVR RS+
Sbjct: 163 NPRRKIQTNKEEERLKNE----RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPA 218
Query: 264 DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPR 322
+ + +K A ++++I+ + +++AY+VFK E + AL N A I G IR+D A
Sbjct: 219 EGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAAAKALERNGAQIADGFRIRVDLA---- 274
Query: 323 KKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRV 380
+ D K++VFVGNLP+ V++ + + F CG SV AVR++R P V
Sbjct: 275 SETSSRD------KRSVFVGNLPYKVEESAVEKHFLDCG------SVVAVRIVRDPVTGV 322
Query: 381 GKGIAYVLFKTRD 393
G+G YVLF+ D
Sbjct: 323 GRGFGYVLFENTD 335
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 261 (96.9 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 70/193 (36%), Positives = 110/193 (56%)
Query: 204 NETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII 263
N+ + + ++++EE +E RT+FVGNLP+ KK L F ++G+IDSVR RS+
Sbjct: 167 NQRKKIEINQEEEKLKNE----RTVFVGNLPVTCNKKKLKSFFREYGQIDSVRFRSLIPA 222
Query: 264 DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPR 322
+ + +K A ++++I+ + ++AY+VFK E S AL N A I G IR+D A
Sbjct: 223 EGTLSKKLAAIKRKIHPDQKYINAYVVFKDESSATKALKRNGAQIADGFRIRVDLA---- 278
Query: 323 KKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRV 380
+ D K++VFVGNLP+ V++ + + F CG S+ AVR++R V
Sbjct: 279 SETSSRD------KRSVFVGNLPYKVEESAVEEHFLDCG------SIVAVRIVRDRVTGV 326
Query: 381 GKGIAYVLFKTRD 393
G+G YVLF+ D
Sbjct: 327 GRGFGYVLFENTD 339
>UNIPROTKB|J9NU83 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 EMBL:AAEX03002684
Ensembl:ENSCAFT00000043962 Uniprot:J9NU83
Length = 344
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 69/190 (36%), Positives = 109/190 (57%)
Query: 204 NETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII 263
N+ + + ++++EE +E RT+FVGNLP+ KK L F ++G+IDSVR RS+
Sbjct: 164 NQRKKIEINQEEEKLKNE----RTVFVGNLPVTCNKKKLKSFFREYGQIDSVRFRSLIPA 219
Query: 264 DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPR 322
+ + +K A ++++I+ + ++AY+VFK E S AL N A I G IR+D A
Sbjct: 220 EGTLSKKLAAIKRKIHPDQKYINAYVVFKDESSATKALKRNGAQIADGFRIRVDLA---- 275
Query: 323 KKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRV 380
+ D K++VFVGNLP+ V++ + + F CG S+ AVR++R V
Sbjct: 276 SETSSRD------KRSVFVGNLPYKVEESAVEEHFLDCG------SIVAVRIVRDRVTGV 323
Query: 381 GKGIAYVLFK 390
G+G YVLF+
Sbjct: 324 GRGFGYVLFE 333
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 257 (95.5 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 65/171 (38%), Positives = 100/171 (58%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV 285
RT+FVGNLP+ KK L F ++G+++SVR RSV + + +K A ++++ + + S+
Sbjct: 183 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSI 242
Query: 286 HAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL 344
+AY+VFK E++ AL N A I G IR+D A + D K++VFVGNL
Sbjct: 243 NAYVVFKEERAAAKALQRNGAQIAEGFRIRVDLA----SETASRD------KRSVFVGNL 292
Query: 345 PFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRD 393
P+ V + + + F CG S+ AVR++R+P VG+G YVLF+ D
Sbjct: 293 PYRVDESALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLFENTD 337
>SGD|S000005401 [details] [associations]
symbol:NOP12 "Protein involved in pre-rRNA processing and
ribosomal biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0030684 "preribosome" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005401 GO:GO:0005730 EMBL:BK006948 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000463 eggNOG:COG0724
GO:GO:0030684 KO:K14837 HOGENOM:HOG000157415 OMA:SIRYRSI
OrthoDB:EOG4JHGQR EMBL:Z74783 PIR:S66726 RefSeq:NP_014601.1
ProteinModelPortal:Q08208 SMR:Q08208 DIP:DIP-6505N IntAct:Q08208
MINT:MINT-669520 STRING:Q08208 PaxDb:Q08208 PeptideAtlas:Q08208
EnsemblFungi:YOL041C GeneID:854116 KEGG:sce:YOL041C CYGD:YOL041c
GeneTree:ENSGT00390000011249 NextBio:975813 Genevestigator:Q08208
GermOnline:YOL041C Uniprot:Q08208
Length = 459
Score = 205 (77.2 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 50/142 (35%), Positives = 83/142 (58%)
Query: 252 IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVIGG 310
I+S+R RS+ D +PRK A +Q++ +++ D+++AYIV+K++ + + N V
Sbjct: 203 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVFQD 261
Query: 311 NHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVE 368
+H+R+D P AP +D K+++FVGNL F+ +E +++ F CG +E
Sbjct: 262 HHLRVDSVAHP--------AP-HDKKRSIFVGNLDFEEIEESLWKHFEPCG------DIE 306
Query: 369 AVRVIRHPHMRVGKGIAYVLFK 390
VR+IR +GKG AYV FK
Sbjct: 307 YVRIIRDSKTNMGKGFAYVQFK 328
Score = 56 (24.8 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 219 DDEGKLLRTIFVGN-LPLKVKKKTLIKEFIK-FG 250
D+ K RT+F+GN L + K + KEF K FG
Sbjct: 141 DELEKAERTVFIGNILSTVITSKKVYKEFKKLFG 174
Score = 56 (24.8 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 22/92 (23%), Positives = 41/92 (44%)
Query: 2 MDKKKSEDNNISAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQHRESQSAENESIFNP 61
+D+KK E S+ +F++ G I N+ V S + K++ R +++ + E +
Sbjct: 12 IDEKKIE----SSVDKLFSSSCGPI-NKLEVKSKTRTVLPDSKKRERAAEADQEEKEASK 66
Query: 62 MXXXXXXXXXXELKKIKKTRQEKPNPDLPDAE 93
L K+KK ++ K N + D E
Sbjct: 67 PDVSDEQTEEVALPKVKKAKKSKRNDEDEDLE 98
>WB|WBGene00008688 [details] [associations]
symbol:F11A10.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0071688 "striated muscle
myosin thick filament assembly" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0000166 GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 HSSP:P19339
eggNOG:COG0724 EMBL:Z68297 KO:K14837 GeneTree:ENSGT00390000011249
RefSeq:NP_502291.1 ProteinModelPortal:Q95QL3 SMR:Q95QL3
STRING:Q95QL3 PaxDb:Q95QL3 EnsemblMetazoa:F11A10.7 GeneID:178148
KEGG:cel:CELE_F11A10.7 UCSC:F11A10.7 CTD:178148 WormBase:F11A10.7
HOGENOM:HOG000017901 InParanoid:Q95QL3 OMA:KEFGHIE NextBio:899918
Uniprot:Q95QL3
Length = 394
Score = 231 (86.4 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 55/164 (33%), Positives = 93/164 (56%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T+FVGN+PL + +K++ + F FG I SVR+R++ + K+ ++ L ++N+ S+
Sbjct: 144 TVFVGNMPLTMNEKSVRRIFSDFGTISSVRMRNLLPANEKLTKRVTHLTGKLNDKQSSLT 203
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
Y+ F +E+S E AL +N + + IR+D+ +K+ G+D +FVGNLPF
Sbjct: 204 FYVKFGAEESVEKALKYNGTKLDDHVIRVDKVGSKKKEF-GKDM-------AIFVGNLPF 255
Query: 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
++ ++ + F VEAVR++R GKG A+V FK
Sbjct: 256 EITEDALITFFSAQI---GPVEAVRIVRDKDTGKGKGFAFVNFK 296
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 168 (64.2 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 51/150 (34%), Positives = 82/150 (54%)
Query: 254 SVRIRSVPII-DTKIPRKG------AILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306
+V + ++P+ + KIP +G A ++++I+ + +++AY+VFK E + AL N A
Sbjct: 184 TVFVGNLPVTCNKKIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGA 243
Query: 307 VIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDL 363
I G IR+D A + D K++VFVGNLP+ V++ I + F CG
Sbjct: 244 QIADGFRIRVDLA----SETSSRD------KRSVFVGNLPYKVEESAIEKHFLDCG---- 289
Query: 364 ESSVEAVRVIRHPHMRVGKGIAYVLFKTRD 393
S+ AVR++R +GKG YVLF+ D
Sbjct: 290 --SIMAVRIVRDKMTGIGKGFGYVLFENTD 317
Score = 69 (29.3 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 204 NETEDMLV-HRKEEGFDDEGKLL---RTIFVGNLPLKVKKK 240
++TED +V RK+ + E + L RT+FVGNLP+ KK
Sbjct: 157 DDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKK 197
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 190 (71.9 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T+FVGNLP+ K+ L+K F +G + S+R+R+ K KQ + A S++
Sbjct: 156 TVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAG-------GKQLFKHKQ-RKVAGSLN 207
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRK--KLKGEDAPLYDIKKTVFVGNL 344
AY+V + + + ALA N + NH+R+ A K + K + D K+T+FVG+L
Sbjct: 208 AYVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKDQQPSDKDAKRTIFVGSL 267
Query: 345 PFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRD 393
+ +E++ ++F + ++ +R ++ KG+AYV F+ D
Sbjct: 268 KYSATEEQLREIFSSCGE----IDYIRCLQDGDKGC-KGVAYVCFQKPD 311
>UNIPROTKB|A8NJ74 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 KO:K14837 GeneTree:ENSGT00390000011249
CTD:23029 HOVERGEN:HBG052167 HOGENOM:HOG000015414 EMBL:DAAA02061464
EMBL:BC109866 IPI:IPI00906924 RefSeq:NP_001103552.1
UniGene:Bt.46148 Ensembl:ENSBTAT00000057151 GeneID:537542
KEGG:bta:537542 OMA:ASESSSX NextBio:20877156 Uniprot:A8NJ74
Length = 272
Score = 156 (60.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/97 (34%), Positives = 62/97 (63%)
Query: 204 NETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII 263
N+ + + ++++EE +E RT+FVGNLP+ KK L F ++G+I+SVR RS+
Sbjct: 167 NQRKKIQINQEEERLKNE----RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPA 222
Query: 264 DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300
+ + +K A ++++I+ + +++AY+VFK E + A
Sbjct: 223 EGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAATKA 259
>ASPGD|ASPL0000048939 [details] [associations]
symbol:AN1452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 EMBL:BN001307
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
EMBL:AACD01000022 KO:K14837 RefSeq:XP_659056.1
ProteinModelPortal:Q5BDC8 STRING:Q5BDC8
EnsemblFungi:CADANIAT00008065 GeneID:2875093 KEGG:ani:AN1452.2
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR Uniprot:Q5BDC8
Length = 520
Score = 124 (48.7 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 251 EIDSVRIRSVPIIDT-KIPRKGAILQKQINENAD-SVHAYIVFKSEQSTEAA-LAFNMAV 307
+IDS+R RS KIP++ A +++I+++ S +AY V+ + Q+ + A A N V
Sbjct: 231 KIDSIRFRSTAFASGGKIPKRAAFAKQEIHDDTTPSTNAYAVYSTAQAAKKAPAALNGTV 290
Query: 308 IGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
+ H+R+D P K D K+ VFVGNL F
Sbjct: 291 VLDRHLRVDNVAHPAK---------VDHKRCVFVGNLDF 320
Score = 72 (30.4 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 366 SVEAVRVIRHPHMRVGKGIAYVLF 389
+VE+VRV+R RVGKG AYV F
Sbjct: 366 NVESVRVVRDRSTRVGKGFAYVQF 389
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 116 (45.9 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 51/177 (28%), Positives = 82/177 (46%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPR-KGAILQKQINENADSV 285
T+FVG L V + L +EF ++G I R+ I+D + R KG
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARV----IMDGQSGRSKG-------------- 305
Query: 286 HAYIVFKSEQSTEAALAFN-MAVIGGNHIRLDRACP----PR---KKLKGEDAP-LYDIK 336
+ Y+ F++ ++ +AA+A N I G + LD + P P+ ++ G L +
Sbjct: 306 YGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPS 365
Query: 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRD 393
TVFVGNL F+ ++++ F G D++S +R+ P KG YV F D
Sbjct: 366 DTVFVGNLSFNATEDDLSTAFGGCGDIQS----IRLPTDPQSGRLKGFGYVTFSDID 418
Score = 50 (22.7 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 16/73 (21%), Positives = 34/73 (46%)
Query: 75 KKIKKTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPRSILGFEPNGTIENEIKKEHSS 134
KK + + + + ++E +++++ S S++S S E ++ E KKE SS
Sbjct: 79 KKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSS 138
Query: 135 NVGSESYLNRQKQ 147
S S +++
Sbjct: 139 ESSSSSESEEEEE 151
Score = 43 (20.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 4 KKKSEDNNISAPSSIFTTLFGGIPNESTVASSLFSDSNPFKRQHRESQSAENESIFNPMX 63
K K E S+P ++ ++ SS S+S + ES S+E+ES +
Sbjct: 53 KSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES-ESSSSESESSSSESE 111
Query: 64 XXXXXXXXXELKK--IKKTRQEK 84
E ++ I KT ++K
Sbjct: 112 SSSSESSSSESEEEVIVKTEEKK 134
Score = 43 (20.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 27/148 (18%), Positives = 44/148 (29%)
Query: 78 KKTRQEKPNPDLPDAEGAATKTLSLSNK---STKLIYPRSILGFEPNGTIENEIKKEHSS 134
KK EKP+ + AA + S+K S K + P + + +KK+ S
Sbjct: 19 KKGAIEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPS-KKSVKKQKKS 77
Query: 135 NVGSESYLNRQKQNSNFSVXXXXXXXXXXXXXXXXXXXXXXYVEKKYGVIAXXXXXXXXX 194
ES + ++S+ E + VI
Sbjct: 78 KKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESS 137
Query: 195 XXXXXXXADNETEDMLV--HRKEEGFDD 220
E E+ +V K+E D
Sbjct: 138 SESSSSSESEEEEEAVVKIEEKKESSSD 165
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 107 (42.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 46/176 (26%), Positives = 75/176 (42%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T+FVG L + L +EF G + R+ I+++ ++ +
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARV---------------IMERATGKSRG--Y 211
Query: 287 AYIVFKSEQSTEAALA-FNMAVIGGNHIRLDRAC--PPRKKLKGEDAPLY-DIKK----T 338
Y+ F+S+ + E AL I G I LD + P K + A Y D + T
Sbjct: 212 GYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT 271
Query: 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDE 394
+F+GNL F+ + ++ +F ++ S RV HP + KG YV F + DE
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISC----RVPTHPDTQQPKGFGYVQFSSVDE 323
Score = 52 (23.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 73 ELKKIKKTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPRSILGFEPNGTIENEIKKEH 132
E K KK +E + + + ++ ++ S + S S G + + + E E++K+
Sbjct: 16 EEKPAKKVEEESSSEESSSDDSSSEESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKKE 75
Query: 133 SSNVGSESYLNRQKQNS 149
SS+ S+ +++ +S
Sbjct: 76 SSSDESDDEDKKEESSS 92
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 107 (42.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 46/176 (26%), Positives = 75/176 (42%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T+FVG L + L +EF G + R+ I+++ ++ +
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARV---------------IMERATGKSRG--Y 211
Query: 287 AYIVFKSEQSTEAALA-FNMAVIGGNHIRLDRAC--PPRKKLKGEDAPLY-DIKK----T 338
Y+ F+S+ + E AL I G I LD + P K + A Y D + T
Sbjct: 212 GYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT 271
Query: 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDE 394
+F+GNL F+ + ++ +F ++ S RV HP + KG YV F + DE
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISC----RVPTHPDTQQPKGFGYVQFSSVDE 323
Score = 52 (23.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 73 ELKKIKKTRQEKPNPDLPDAEGAATKTLSLSNKSTKLIYPRSILGFEPNGTIENEIKKEH 132
E K KK +E + + + ++ ++ S + S S G + + + E E++K+
Sbjct: 16 EEKPAKKVEEESSSEESSSDDSSSEESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKKE 75
Query: 133 SSNVGSESYLNRQKQNS 149
SS+ S+ +++ +S
Sbjct: 76 SSSDESDDEDKKEESSS 92
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 94 (38.1 bits), Expect = 0.00054, P = 0.00054
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRD 393
K TV+V NLPF + + ++Y++F V V +++ R KG+A++LF +D
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYG----KVVKVTIMKDKDTRKSKGVAFILFLDKD 62
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 399 351 0.00078 117 3 11 23 0.45 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 595 (63 KB)
Total size of DFA: 205 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.08u 0.09s 29.17t Elapsed: 00:00:04
Total cpu time: 29.08u 0.09s 29.17t Elapsed: 00:00:04
Start: Tue May 21 00:09:49 2013 End: Tue May 21 00:09:53 2013