Query 015821
Match_columns 399
No_of_seqs 355 out of 2176
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 01:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 4.5E-27 9.8E-32 235.4 17.7 147 223-399 105-252 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.5E-25 3.3E-30 223.2 18.1 145 225-399 3-148 (352)
3 TIGR01645 half-pint poly-U bin 99.9 2.1E-25 4.6E-30 235.5 18.1 155 224-399 106-263 (612)
4 TIGR01622 SF-CC1 splicing fact 99.9 2.9E-25 6.2E-30 229.2 18.5 159 220-399 84-245 (457)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.5E-23 5.5E-28 207.3 18.9 154 225-399 89-328 (352)
6 TIGR01628 PABP-1234 polyadenyl 99.9 1.3E-23 2.8E-28 222.8 17.2 144 227-399 2-146 (562)
7 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.9E-23 1.1E-27 215.2 18.3 153 220-399 170-354 (509)
8 KOG0148 Apoptosis-promoting RN 99.9 1.1E-22 2.4E-27 191.7 13.4 148 225-399 62-217 (321)
9 TIGR01628 PABP-1234 polyadenyl 99.9 1E-21 2.2E-26 208.3 17.2 153 224-399 177-343 (562)
10 KOG0127 Nucleolar protein fibr 99.9 1.2E-21 2.6E-26 198.8 14.9 153 225-399 117-351 (678)
11 KOG0144 RNA-binding protein CU 99.9 5.6E-22 1.2E-26 196.6 10.8 154 216-399 25-182 (510)
12 TIGR01648 hnRNP-R-Q heterogene 99.9 2.6E-21 5.6E-26 204.1 15.9 141 224-399 57-199 (578)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.1E-21 1.3E-25 199.3 17.6 144 225-399 2-151 (481)
14 KOG0131 Splicing factor 3b, su 99.8 2.6E-21 5.6E-26 173.4 9.9 149 222-399 6-156 (203)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 1.9E-20 4.2E-25 195.5 18.0 149 223-399 273-453 (481)
16 KOG0145 RNA-binding protein EL 99.8 8.3E-21 1.8E-25 178.2 11.4 145 225-399 41-186 (360)
17 KOG0117 Heterogeneous nuclear 99.8 2.4E-20 5.2E-25 185.8 15.0 141 223-398 81-224 (506)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.8 5E-20 1.1E-24 192.6 18.0 155 224-399 294-481 (509)
19 KOG0127 Nucleolar protein fibr 99.8 1.4E-20 3.1E-25 191.0 12.8 152 226-399 6-175 (678)
20 KOG0124 Polypyrimidine tract-b 99.8 1.4E-19 3.1E-24 176.4 7.6 154 225-399 113-269 (544)
21 KOG0110 RNA-binding protein (R 99.8 6.1E-19 1.3E-23 184.0 11.5 155 227-399 517-672 (725)
22 TIGR01648 hnRNP-R-Q heterogene 99.8 4.4E-18 9.6E-23 179.7 15.9 145 225-399 138-286 (578)
23 TIGR01622 SF-CC1 splicing fact 99.8 1.7E-17 3.8E-22 171.3 18.0 150 225-399 186-427 (457)
24 KOG0123 Polyadenylate-binding 99.8 6.5E-18 1.4E-22 170.6 13.5 129 227-399 3-132 (369)
25 KOG4205 RNA-binding protein mu 99.8 2.8E-18 6E-23 168.7 10.2 152 224-399 5-156 (311)
26 KOG0117 Heterogeneous nuclear 99.7 7.9E-18 1.7E-22 168.0 12.5 146 222-399 161-310 (506)
27 KOG0147 Transcriptional coacti 99.7 1.6E-18 3.5E-23 176.8 3.4 159 220-399 174-337 (549)
28 KOG0145 RNA-binding protein EL 99.7 3.2E-17 6.8E-22 154.2 11.7 154 225-399 127-337 (360)
29 KOG0123 Polyadenylate-binding 99.7 5.5E-17 1.2E-21 163.9 12.5 147 227-399 78-225 (369)
30 KOG0109 RNA-binding protein LA 99.7 4.2E-17 9E-22 155.5 9.1 125 227-399 4-129 (346)
31 KOG4211 Splicing factor hnRNP- 99.7 1.5E-15 3.2E-20 153.6 15.3 150 225-399 10-162 (510)
32 KOG0105 Alternative splicing f 99.6 1.2E-15 2.7E-20 137.4 12.3 146 223-399 4-167 (241)
33 KOG0146 RNA-binding protein ET 99.6 1.2E-15 2.6E-20 144.1 11.0 61 335-399 284-344 (371)
34 PLN03134 glycine-rich RNA-bind 99.6 2.1E-14 4.5E-19 127.3 11.4 84 222-322 31-115 (144)
35 KOG0144 RNA-binding protein CU 99.5 1.6E-14 3.5E-19 143.9 8.6 76 225-318 124-203 (510)
36 COG0724 RNA-binding proteins ( 99.5 1.2E-13 2.7E-18 128.3 14.0 145 225-390 115-275 (306)
37 KOG4206 Spliceosomal protein s 99.5 1.1E-13 2.4E-18 128.5 13.3 145 225-398 9-199 (221)
38 KOG0148 Apoptosis-promoting RN 99.5 2.2E-14 4.9E-19 135.8 8.6 117 224-399 5-121 (321)
39 TIGR01645 half-pint poly-U bin 99.5 7E-13 1.5E-17 140.9 17.2 79 224-319 203-282 (612)
40 PF00076 RRM_1: RNA recognitio 99.5 1.5E-13 3.3E-18 104.5 8.7 69 228-314 1-70 (70)
41 KOG0129 Predicted RNA-binding 99.5 3.3E-13 7.1E-18 137.6 13.7 165 220-399 254-430 (520)
42 PLN03120 nucleic acid binding 99.4 4.5E-13 9.6E-18 128.3 9.5 76 225-320 4-79 (260)
43 KOG1457 RNA binding protein (c 99.4 4.6E-12 9.9E-17 117.4 13.5 156 220-399 29-265 (284)
44 KOG0121 Nuclear cap-binding pr 99.4 9.7E-13 2.1E-17 112.4 6.5 80 223-319 34-114 (153)
45 PF14259 RRM_6: RNA recognitio 99.4 3.7E-12 8.1E-17 97.8 8.8 69 228-314 1-70 (70)
46 KOG4212 RNA-binding protein hn 99.4 8.9E-12 1.9E-16 124.7 13.4 152 225-399 44-273 (608)
47 KOG1548 Transcription elongati 99.3 1.6E-11 3.5E-16 119.9 14.7 166 216-399 125-331 (382)
48 KOG0149 Predicted RNA-binding 99.3 2.6E-12 5.6E-17 120.0 7.1 79 225-320 12-90 (247)
49 PLN03121 nucleic acid binding 99.3 7.1E-12 1.5E-16 118.5 9.7 76 225-320 5-80 (243)
50 KOG0126 Predicted RNA-binding 99.3 5.3E-13 1.1E-17 120.2 1.2 83 222-321 32-115 (219)
51 KOG0106 Alternative splicing f 99.3 4E-12 8.7E-17 118.8 7.1 136 227-399 3-150 (216)
52 KOG0107 Alternative splicing f 99.3 6.3E-12 1.4E-16 112.7 6.9 75 225-321 10-85 (195)
53 PLN03134 glycine-rich RNA-bind 99.3 1.3E-11 2.8E-16 109.5 7.7 63 333-399 31-93 (144)
54 KOG0110 RNA-binding protein (R 99.3 2E-11 4.2E-16 128.4 10.0 151 221-399 381-577 (725)
55 smart00362 RRM_2 RNA recogniti 99.2 5.7E-11 1.2E-15 88.9 8.7 71 227-316 1-72 (72)
56 TIGR01659 sex-lethal sex-letha 99.2 4.8E-11 1E-15 120.1 10.5 80 225-321 193-275 (346)
57 KOG0147 Transcriptional coacti 99.2 5.9E-11 1.3E-15 121.9 10.9 75 227-318 280-355 (549)
58 KOG0114 Predicted RNA-binding 99.2 5.6E-11 1.2E-15 98.3 8.6 79 223-321 16-95 (124)
59 KOG0113 U1 small nuclear ribon 99.2 4.3E-11 9.3E-16 115.1 8.7 79 224-319 100-179 (335)
60 PLN03213 repressor of silencin 99.2 4.4E-11 9.6E-16 121.2 9.1 75 225-320 10-87 (759)
61 KOG0149 Predicted RNA-binding 99.2 4.6E-11 1E-15 111.6 6.5 60 336-399 12-71 (247)
62 PF00076 RRM_1: RNA recognitio 99.2 6.5E-11 1.4E-15 89.9 6.2 56 339-399 1-56 (70)
63 smart00360 RRM RNA recognition 99.1 1.8E-10 4E-15 85.7 7.8 70 230-316 1-71 (71)
64 KOG0122 Translation initiation 99.1 1.9E-10 4.2E-15 108.0 9.3 83 222-321 186-269 (270)
65 cd00590 RRM RRM (RNA recogniti 99.1 3.9E-10 8.5E-15 84.7 9.2 73 227-317 1-74 (74)
66 KOG1190 Polypyrimidine tract-b 99.1 1E-09 2.3E-14 109.3 14.2 145 225-399 297-469 (492)
67 PF14259 RRM_6: RNA recognitio 99.1 1.9E-10 4.1E-15 88.3 6.3 56 339-399 1-56 (70)
68 KOG1365 RNA-binding protein Fu 99.1 2E-10 4.3E-15 113.6 7.9 152 225-398 161-340 (508)
69 KOG0125 Ataxin 2-binding prote 99.1 2.2E-10 4.8E-15 111.4 7.2 78 225-321 96-174 (376)
70 KOG4207 Predicted splicing fac 99.1 2E-10 4.2E-15 105.6 5.7 78 225-319 13-91 (256)
71 KOG4211 Splicing factor hnRNP- 99.0 1.5E-09 3.2E-14 110.6 12.2 152 224-399 102-338 (510)
72 KOG0111 Cyclophilin-type pepti 99.0 1.3E-10 2.9E-15 107.6 4.1 82 224-322 9-91 (298)
73 KOG0122 Translation initiation 99.0 3.9E-10 8.4E-15 106.0 6.9 63 333-399 186-248 (270)
74 KOG0130 RNA-binding protein RB 99.0 3.9E-10 8.5E-15 97.4 5.7 79 225-320 72-151 (170)
75 KOG0108 mRNA cleavage and poly 98.9 1.5E-09 3.2E-14 111.7 7.5 78 226-320 19-97 (435)
76 PLN03120 nucleic acid binding 98.9 2E-09 4.3E-14 103.3 7.2 57 336-399 4-60 (260)
77 KOG4210 Nuclear localization s 98.9 1.3E-09 2.9E-14 106.8 4.1 155 224-399 87-244 (285)
78 smart00362 RRM_2 RNA recogniti 98.9 6.7E-09 1.5E-13 77.5 6.9 56 338-399 1-56 (72)
79 PLN03121 nucleic acid binding 98.9 4.9E-09 1.1E-13 99.4 7.3 58 335-399 4-61 (243)
80 KOG1365 RNA-binding protein Fu 98.8 2.4E-08 5.1E-13 99.1 11.8 158 224-399 59-223 (508)
81 KOG0121 Nuclear cap-binding pr 98.8 3.7E-09 8.1E-14 90.7 4.6 61 335-399 35-95 (153)
82 KOG0128 RNA-binding protein SA 98.8 3.9E-10 8.5E-15 120.7 -2.3 131 221-398 663-793 (881)
83 PF13893 RRM_5: RNA recognitio 98.8 1.3E-08 2.7E-13 75.2 6.4 55 242-318 1-56 (56)
84 smart00360 RRM RNA recognition 98.8 1.3E-08 2.8E-13 75.5 6.5 55 341-399 1-55 (71)
85 KOG0113 U1 small nuclear ribon 98.8 1E-08 2.2E-13 98.9 6.7 62 333-398 98-159 (335)
86 COG0724 RNA-binding proteins ( 98.8 1.3E-08 2.9E-13 94.4 7.0 60 336-399 115-174 (306)
87 smart00361 RRM_1 RNA recogniti 98.8 3E-08 6.6E-13 76.8 7.7 62 239-315 2-69 (70)
88 KOG0126 Predicted RNA-binding 98.7 2.4E-09 5.2E-14 96.8 0.5 60 333-396 32-91 (219)
89 KOG0120 Splicing factor U2AF, 98.7 3.6E-08 7.8E-13 102.4 9.1 155 224-399 288-471 (500)
90 KOG4454 RNA binding protein (R 98.7 2.6E-09 5.7E-14 99.0 0.6 124 225-390 9-133 (267)
91 KOG0120 Splicing factor U2AF, 98.7 2.3E-08 5E-13 103.8 7.3 152 220-398 170-347 (500)
92 KOG0125 Ataxin 2-binding prote 98.7 2.5E-08 5.4E-13 97.3 6.2 60 333-398 93-152 (376)
93 cd00590 RRM RRM (RNA recogniti 98.7 6.2E-08 1.3E-12 72.6 7.1 57 338-399 1-57 (74)
94 KOG0153 Predicted RNA-binding 98.7 5.3E-08 1.2E-12 95.7 8.2 77 222-321 225-303 (377)
95 KOG0415 Predicted peptidyl pro 98.6 4.4E-08 9.5E-13 96.4 6.6 81 224-321 238-319 (479)
96 KOG0132 RNA polymerase II C-te 98.6 4.1E-08 8.8E-13 104.5 6.7 111 222-359 418-529 (894)
97 KOG4207 Predicted splicing fac 98.6 3.8E-08 8.3E-13 90.7 4.9 66 330-399 7-72 (256)
98 PLN03213 repressor of silencin 98.6 7.1E-08 1.5E-12 98.3 6.2 57 335-399 9-67 (759)
99 KOG0112 Large RNA-binding prot 98.6 2.6E-08 5.7E-13 107.4 2.9 141 220-399 367-508 (975)
100 KOG0114 Predicted RNA-binding 98.5 1.5E-07 3.3E-12 78.2 5.6 59 334-399 16-74 (124)
101 KOG0109 RNA-binding protein LA 98.5 9.3E-08 2E-12 92.1 4.6 74 223-321 76-150 (346)
102 KOG0131 Splicing factor 3b, su 98.5 1.1E-07 2.4E-12 86.2 3.8 61 335-399 8-68 (203)
103 KOG4208 Nucleolar RNA-binding 98.5 3.8E-07 8.3E-12 84.2 6.9 80 225-321 49-130 (214)
104 KOG1190 Polypyrimidine tract-b 98.4 4.9E-07 1.1E-11 90.6 8.0 144 224-398 27-204 (492)
105 KOG4661 Hsp27-ERE-TATA-binding 98.4 3.2E-07 6.9E-12 94.9 6.8 82 222-320 402-484 (940)
106 KOG0130 RNA-binding protein RB 98.4 1.9E-07 4E-12 81.0 4.2 61 335-399 71-131 (170)
107 KOG0108 mRNA cleavage and poly 98.4 2.3E-07 4.9E-12 95.7 5.6 59 337-399 19-77 (435)
108 KOG4205 RNA-binding protein mu 98.4 3.2E-07 7E-12 90.8 6.3 83 225-324 97-179 (311)
109 KOG0111 Cyclophilin-type pepti 98.4 9E-08 2E-12 89.0 2.2 63 333-399 7-69 (298)
110 KOG0124 Polypyrimidine tract-b 98.4 4.2E-07 9.2E-12 89.8 6.9 79 224-319 209-288 (544)
111 KOG0107 Alternative splicing f 98.4 3.2E-07 6.8E-12 82.8 5.2 56 335-399 9-64 (195)
112 KOG0146 RNA-binding protein ET 98.4 4.1E-07 8.8E-12 86.8 5.8 83 222-321 282-365 (371)
113 KOG0151 Predicted splicing reg 98.3 1.4E-06 3.1E-11 92.2 8.6 90 216-319 165-255 (877)
114 KOG4209 Splicing factor RNPS1, 98.3 7.9E-07 1.7E-11 84.8 5.8 79 224-319 100-178 (231)
115 KOG0116 RasGAP SH3 binding pro 98.3 1.1E-06 2.4E-11 90.1 6.8 81 222-319 285-365 (419)
116 KOG1456 Heterogeneous nuclear 98.3 9.1E-06 2E-10 80.9 12.8 151 222-399 284-464 (494)
117 KOG0533 RRM motif-containing p 98.3 1.9E-06 4.1E-11 82.5 7.3 80 224-321 82-162 (243)
118 KOG0105 Alternative splicing f 98.3 9.7E-07 2.1E-11 80.3 4.7 58 335-399 5-62 (241)
119 KOG0415 Predicted peptidyl pro 98.2 1.2E-06 2.5E-11 86.6 4.6 63 333-399 236-298 (479)
120 smart00361 RRM_1 RNA recogniti 98.2 2.6E-06 5.6E-11 66.0 5.5 46 350-399 2-54 (70)
121 KOG4212 RNA-binding protein hn 98.2 2.1E-06 4.5E-11 86.7 6.2 74 222-317 533-607 (608)
122 KOG4660 Protein Mei2, essentia 98.2 1.6E-06 3.4E-11 89.9 4.7 72 222-315 72-144 (549)
123 KOG4208 Nucleolar RNA-binding 98.2 4E-06 8.7E-11 77.5 6.7 63 333-398 46-108 (214)
124 KOG4676 Splicing factor, argin 98.1 1.6E-06 3.4E-11 86.6 3.0 149 226-396 8-203 (479)
125 KOG1456 Heterogeneous nuclear 98.1 2.3E-05 5E-10 78.1 10.7 142 223-398 29-175 (494)
126 PF04059 RRM_2: RNA recognitio 98.0 2.5E-05 5.4E-10 64.8 8.1 79 226-319 2-85 (97)
127 KOG0226 RNA-binding proteins [ 97.9 1.7E-05 3.7E-10 75.5 6.1 150 225-399 96-249 (290)
128 PF04059 RRM_2: RNA recognitio 97.8 8.1E-05 1.8E-09 61.7 6.9 59 337-397 2-60 (97)
129 KOG0153 Predicted RNA-binding 97.8 3.4E-05 7.4E-10 76.2 5.3 56 333-398 225-280 (377)
130 KOG4206 Spliceosomal protein s 97.7 5.8E-05 1.3E-09 70.8 6.0 58 335-399 8-69 (221)
131 KOG4307 RNA binding protein RB 97.7 5.6E-05 1.2E-09 80.3 6.1 151 225-398 311-492 (944)
132 KOG0132 RNA polymerase II C-te 97.7 4.7E-05 1E-09 81.7 4.9 56 334-399 419-474 (894)
133 KOG2193 IGF-II mRNA-binding pr 97.6 7.4E-06 1.6E-10 82.6 -1.2 129 227-399 3-136 (584)
134 KOG0226 RNA-binding proteins [ 97.6 5.2E-05 1.1E-09 72.3 4.5 79 224-319 189-268 (290)
135 PF13893 RRM_5: RNA recognitio 97.6 0.0001 2.2E-09 54.1 4.6 38 353-399 1-38 (56)
136 KOG0128 RNA-binding protein SA 97.6 6.5E-06 1.4E-10 89.0 -2.6 152 226-399 572-726 (881)
137 PF11608 Limkain-b1: Limkain b 97.5 0.00017 3.6E-09 58.1 5.5 67 226-319 3-75 (90)
138 KOG0116 RasGAP SH3 binding pro 97.5 8.7E-05 1.9E-09 76.4 5.0 60 336-399 288-347 (419)
139 KOG0533 RRM motif-containing p 97.5 0.00013 2.7E-09 70.1 5.2 59 336-399 83-141 (243)
140 KOG4209 Splicing factor RNPS1, 97.4 0.00011 2.5E-09 70.1 3.9 61 335-399 100-160 (231)
141 KOG4661 Hsp27-ERE-TATA-binding 97.4 0.00018 3.8E-09 75.1 5.3 61 335-399 404-464 (940)
142 COG5175 MOT2 Transcriptional r 97.3 0.00039 8.4E-09 68.7 6.0 118 226-358 115-242 (480)
143 KOG4210 Nuclear localization s 97.1 0.00032 6.9E-09 69.1 3.2 80 225-321 184-264 (285)
144 KOG1457 RNA binding protein (c 97.1 0.00094 2E-08 62.8 6.0 62 335-399 33-94 (284)
145 KOG1855 Predicted RNA-binding 97.1 0.00081 1.8E-08 68.3 5.5 82 216-304 222-306 (484)
146 KOG4307 RNA binding protein RB 97.0 0.0018 3.8E-08 69.3 7.1 74 226-317 868-943 (944)
147 PF08777 RRM_3: RNA binding mo 96.9 0.001 2.2E-08 55.9 4.2 53 337-399 2-54 (105)
148 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0039 8.4E-08 52.1 7.3 82 225-318 6-89 (100)
149 KOG1995 Conserved Zn-finger pr 96.9 0.0013 2.8E-08 65.6 4.8 89 223-320 64-153 (351)
150 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0029 6.3E-08 46.6 5.0 52 226-301 2-53 (53)
151 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.003 6.6E-08 46.5 5.1 52 337-399 2-53 (53)
152 PF08777 RRM_3: RNA binding mo 96.7 0.004 8.8E-08 52.3 6.4 53 226-301 2-54 (105)
153 KOG4660 Protein Mei2, essentia 96.7 0.0012 2.5E-08 69.1 3.6 58 333-399 72-129 (549)
154 KOG4454 RNA binding protein (R 96.7 0.0011 2.4E-08 62.2 2.7 61 333-399 6-66 (267)
155 KOG0106 Alternative splicing f 96.5 0.0015 3.4E-08 61.5 2.5 71 223-318 97-168 (216)
156 KOG3152 TBP-binding protein, a 96.4 0.0031 6.7E-08 60.4 4.0 84 224-312 73-157 (278)
157 KOG1548 Transcription elongati 96.4 0.0049 1.1E-07 61.3 5.5 59 336-399 134-200 (382)
158 KOG0151 Predicted splicing reg 96.4 0.0034 7.3E-08 67.4 4.2 61 335-399 173-236 (877)
159 KOG0129 Predicted RNA-binding 95.9 0.02 4.3E-07 59.7 7.3 77 224-318 369-451 (520)
160 KOG0115 RNA-binding protein p5 95.5 0.015 3.3E-07 55.8 4.1 81 297-398 7-88 (275)
161 KOG1995 Conserved Zn-finger pr 95.3 0.016 3.4E-07 58.0 3.8 62 334-399 64-133 (351)
162 KOG2314 Translation initiation 95.3 0.03 6.6E-07 58.9 6.0 75 225-317 58-140 (698)
163 KOG1996 mRNA splicing factor [ 95.3 0.039 8.5E-07 54.0 6.3 65 239-319 300-365 (378)
164 PF08952 DUF1866: Domain of un 95.2 0.042 9.1E-07 48.8 5.8 72 224-320 26-106 (146)
165 KOG0112 Large RNA-binding prot 95.1 0.023 5E-07 62.6 4.4 76 223-321 453-531 (975)
166 KOG1855 Predicted RNA-binding 95.1 0.059 1.3E-06 55.1 7.0 60 335-398 230-302 (484)
167 KOG2416 Acinus (induces apopto 94.9 0.017 3.6E-07 61.2 2.5 74 223-319 442-520 (718)
168 PF03467 Smg4_UPF3: Smg-4/UPF3 94.6 0.04 8.6E-07 50.6 4.1 72 225-310 7-82 (176)
169 PF08675 RNA_bind: RNA binding 94.4 0.17 3.7E-06 40.9 6.8 55 222-302 6-60 (87)
170 KOG4849 mRNA cleavage factor I 94.4 0.017 3.7E-07 57.5 1.4 61 335-397 79-139 (498)
171 PF11608 Limkain-b1: Limkain b 94.4 0.1 2.2E-06 42.2 5.4 50 337-399 3-56 (90)
172 KOG2202 U2 snRNP splicing fact 93.5 0.032 6.9E-07 53.6 1.3 62 240-319 83-146 (260)
173 KOG4849 mRNA cleavage factor I 93.2 0.07 1.5E-06 53.4 3.1 77 225-318 80-159 (498)
174 KOG2135 Proteins containing th 91.7 0.079 1.7E-06 54.9 1.3 75 223-320 370-445 (526)
175 PF10309 DUF2414: Protein of u 91.6 0.84 1.8E-05 34.8 6.5 51 226-302 6-60 (62)
176 KOG4676 Splicing factor, argin 90.7 0.17 3.7E-06 51.4 2.6 58 337-398 8-68 (479)
177 PF15023 DUF4523: Protein of u 90.4 0.56 1.2E-05 41.7 5.2 71 225-319 86-160 (166)
178 PF05172 Nup35_RRM: Nup53/35/4 90.2 0.58 1.3E-05 39.1 5.0 60 335-399 5-71 (100)
179 KOG2314 Translation initiation 90.2 0.43 9.4E-06 50.6 5.1 59 336-399 58-122 (698)
180 PF07292 NID: Nmi/IFP 35 domai 89.3 0.28 6.2E-06 40.0 2.4 72 287-358 1-74 (88)
181 KOG4285 Mitotic phosphoprotein 88.1 1.5 3.2E-05 43.4 6.8 71 225-319 197-268 (350)
182 PF10309 DUF2414: Protein of u 88.1 1.6 3.4E-05 33.3 5.6 54 337-399 6-59 (62)
183 PF08675 RNA_bind: RNA binding 88.0 1.4 3.1E-05 35.6 5.5 49 337-398 10-58 (87)
184 KOG2068 MOT2 transcription fac 87.4 0.31 6.8E-06 48.6 1.8 82 225-320 77-162 (327)
185 KOG2253 U1 snRNP complex, subu 86.6 0.11 2.4E-06 55.7 -2.0 136 224-391 39-185 (668)
186 KOG3152 TBP-binding protein, a 85.6 0.56 1.2E-05 45.3 2.4 58 336-397 74-143 (278)
187 KOG0115 RNA-binding protein p5 85.2 0.99 2.1E-05 43.6 3.8 59 226-302 32-90 (275)
188 KOG0804 Cytoplasmic Zn-finger 82.6 6.5 0.00014 41.0 8.6 66 225-309 74-141 (493)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 81.3 1.3 2.8E-05 40.6 2.8 57 336-396 7-69 (176)
190 PF14111 DUF4283: Domain of un 81.0 1.9 4.1E-05 37.6 3.7 84 285-375 56-140 (153)
191 PF07576 BRAP2: BRCA1-associat 80.9 15 0.00032 31.2 8.9 64 227-309 15-80 (110)
192 PF04847 Calcipressin: Calcipr 80.8 2.8 6.1E-05 38.8 4.9 60 238-320 8-70 (184)
193 COG5175 MOT2 Transcriptional r 80.2 2.2 4.7E-05 42.9 4.1 60 336-399 114-182 (480)
194 PF07576 BRAP2: BRCA1-associat 79.0 12 0.00025 31.8 7.7 58 335-397 12-69 (110)
195 PF10567 Nab6_mRNP_bdg: RNA-re 78.5 24 0.00052 35.0 10.6 166 221-398 11-207 (309)
196 KOG2416 Acinus (induces apopto 75.8 1.3 2.8E-05 47.4 1.2 56 333-397 441-496 (718)
197 PF11767 SET_assoc: Histone ly 72.7 22 0.00049 27.4 7.1 54 236-315 11-65 (66)
198 KOG4483 Uncharacterized conser 71.6 9.8 0.00021 39.2 6.2 68 223-313 389-456 (528)
199 KOG4574 RNA-binding protein (c 70.5 2.5 5.5E-05 47.0 1.9 73 224-319 297-372 (1007)
200 KOG2591 c-Mpl binding protein, 66.2 11 0.00023 40.4 5.4 68 223-314 173-245 (684)
201 KOG2591 c-Mpl binding protein, 65.9 20 0.00042 38.5 7.2 53 335-398 174-228 (684)
202 KOG0804 Cytoplasmic Zn-finger 64.4 11 0.00023 39.5 4.8 57 336-397 74-130 (493)
203 KOG2068 MOT2 transcription fac 59.1 6.8 0.00015 39.3 2.4 58 337-399 78-142 (327)
204 PF15023 DUF4523: Protein of u 58.0 17 0.00038 32.5 4.4 56 333-399 83-142 (166)
205 KOG2318 Uncharacterized conser 57.1 38 0.00082 36.6 7.5 90 223-315 172-300 (650)
206 KOG4410 5-formyltetrahydrofola 51.8 31 0.00067 34.2 5.4 50 223-295 328-378 (396)
207 KOG2202 U2 snRNP splicing fact 49.5 3.4 7.4E-05 40.0 -1.4 35 364-399 93-127 (260)
208 KOG2253 U1 snRNP complex, subu 46.8 11 0.00024 41.1 1.7 54 333-399 37-90 (668)
209 PF08952 DUF1866: Domain of un 46.0 24 0.00052 31.5 3.5 36 352-399 52-87 (146)
210 PF03880 DbpA: DbpA RNA bindin 44.4 25 0.00054 27.2 3.0 57 236-318 12-74 (74)
211 KOG1996 mRNA splicing factor [ 39.8 45 0.00098 33.2 4.5 59 337-399 282-346 (378)
212 COG5193 LHP1 La protein, small 38.7 15 0.00033 37.8 1.2 63 335-399 173-243 (438)
213 KOG4008 rRNA processing protei 37.6 37 0.0008 32.7 3.5 36 222-257 37-72 (261)
214 KOG2891 Surface glycoprotein [ 35.6 27 0.00058 34.5 2.3 33 226-258 150-194 (445)
215 KOG4483 Uncharacterized conser 35.5 50 0.0011 34.2 4.2 55 335-399 390-444 (528)
216 KOG4285 Mitotic phosphoprotein 35.1 69 0.0015 32.0 5.0 53 336-399 197-249 (350)
217 KOG4410 5-formyltetrahydrofola 33.6 42 0.00091 33.3 3.2 49 336-393 330-378 (396)
218 KOG2318 Uncharacterized conser 31.7 51 0.0011 35.6 3.8 43 333-375 171-214 (650)
219 KOG1295 Nonsense-mediated deca 30.2 68 0.0015 32.9 4.3 71 225-309 7-78 (376)
220 KOG0156 Cytochrome P450 CYP2 s 29.3 70 0.0015 34.1 4.4 59 228-313 35-97 (489)
221 PF03468 XS: XS domain; Inter 29.2 68 0.0015 27.4 3.5 58 227-304 10-77 (116)
222 KOG2891 Surface glycoprotein [ 27.7 91 0.002 30.9 4.4 51 335-389 148-215 (445)
223 KOG2135 Proteins containing th 24.1 38 0.00083 35.7 1.2 52 336-397 372-424 (526)
224 KOG4574 RNA-binding protein (c 24.0 33 0.00071 38.7 0.8 53 337-399 299-351 (1007)
225 PF03468 XS: XS domain; Inter 23.7 70 0.0015 27.3 2.6 37 348-391 29-65 (116)
226 KOG4213 RNA-binding protein La 20.1 92 0.002 28.9 2.7 67 225-311 111-177 (205)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=4.5e-27 Score=235.42 Aligned_cols=147 Identities=22% Similarity=0.348 Sum_probs=131.7
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+++|..||.|.+|+|+.++. ++.++|||||+|.+.++|..||
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~-----------------tg~srGyaFVeF~~~e~A~~Ai~ 167 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK-----------------TGYSFGYAFVDFGSEADSQRAIK 167 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----------------CCccCcEEEEEEccHHHHHHHHH
Confidence 3468999999999999999999999999999999976542 3456799999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~ 381 (399)
.||+..|.++.|.|.++.+... .....+|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.+
T Consensus 168 ~LnG~~l~gr~i~V~~a~p~~~---------~~~~~~lfV~nLp~~vtee~L~~~F~~f----G~V~~v~i~~d~~tg~~ 234 (346)
T TIGR01659 168 NLNGITVRNKRLKVSYARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKY----GQIVQKNILRDKLTGTP 234 (346)
T ss_pred HcCCCccCCceeeeeccccccc---------ccccceeEEeCCCCcccHHHHHHHHHhc----CCEEEEEEeecCCCCcc
Confidence 6999999999999999865321 1234689999999999999999999999 99999999999989999
Q ss_pred ccEEEEEecCHHHHHhhC
Q 015821 382 KGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 382 kG~AFV~F~s~e~A~~AL 399 (399)
+|||||+|.+.++|++||
T Consensus 235 kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 235 RGVAFVRFNKREEAQEAI 252 (346)
T ss_pred ceEEEEEECCHHHHHHHH
Confidence 999999999999999986
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=1.5e-25 Score=223.23 Aligned_cols=145 Identities=19% Similarity=0.351 Sum_probs=130.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
..+|||+|||+.+|+++|+++|+.||+|.+|+|++++. +|.++|||||+|.+.++|..|| .|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~-----------------~g~s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV-----------------TGQSLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC-----------------CCccceEEEEEECcHHHHHHHHhhc
Confidence 57899999999999999999999999999999977652 3456799999999999999999 69
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG 383 (399)
||..|.|+.|.|.++.+... ....++|||+|||..+++++|+.+|+.| |.|..++++.+..+|.++|
T Consensus 66 ~g~~l~g~~i~v~~a~~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g 132 (352)
T TIGR01661 66 NGLRLQNKTIKVSYARPSSD---------SIKGANLYVSGLPKTMTQHELESIFSPF----GQIITSRILSDNVTGLSKG 132 (352)
T ss_pred ccEEECCeeEEEEeeccccc---------ccccceEEECCccccCCHHHHHHHHhcc----CCEEEEEEEecCCCCCcCc
Confidence 99999999999999865431 1234689999999999999999999999 9999999999988899999
Q ss_pred EEEEEecCHHHHHhhC
Q 015821 384 IAYVLFKTRDEEWEII 399 (399)
Q Consensus 384 ~AFV~F~s~e~A~~AL 399 (399)
||||+|.+.++|..||
T Consensus 133 ~~fv~f~~~~~A~~ai 148 (352)
T TIGR01661 133 VGFIRFDKRDEADRAI 148 (352)
T ss_pred EEEEEECCHHHHHHHH
Confidence 9999999999999985
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=2.1e-25 Score=235.47 Aligned_cols=155 Identities=18% Similarity=0.363 Sum_probs=131.5
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+.+|+++|+.+|..||.|.+|+|+.++. ++.++|||||+|.+.++|+.|+ .
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~-----------------TgkskGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-----------------TGKHKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC-----------------CCCcCCeEEEEeCcHHHHHHHHHh
Confidence 468899999999999999999999999999999977652 3456799999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCCCccCCCCC--CCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCC
Q 015821 303 FNMAVIGGNHIRLDRACPPRKKLKGE--DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~--~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~ 380 (399)
|||..|.|+.|+|.+........... ........++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.
T Consensus 169 lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F----G~I~svrl~~D~~tgk 244 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRG 244 (612)
T ss_pred cCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCC
Confidence 99999999999998764321111000 01112245799999999999999999999999 9999999999998899
Q ss_pred CccEEEEEecCHHHHHhhC
Q 015821 381 GKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 381 ~kG~AFV~F~s~e~A~~AL 399 (399)
++|||||+|.+.++|..||
T Consensus 245 sKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred cCCeEEEEECCHHHHHHHH
Confidence 9999999999999999885
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=2.9e-25 Score=229.22 Aligned_cols=159 Identities=24% Similarity=0.365 Sum_probs=134.2
Q ss_pred cCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 220 ~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
+.....++|||+|||+.+|+++|.++|+.||.|..|+|+.+.. ++.++|||||+|.+.++|.+
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~-----------------~~~skg~afVeF~~~e~A~~ 146 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN-----------------SRRSKGVAYVEFYDVESVIK 146 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC-----------------CCCcceEEEEEECCHHHHHH
Confidence 3445578999999999999999999999999999999976542 34567999999999999999
Q ss_pred HHHccCceeeeeeeEEecCCCCccCCCC---CCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecC
Q 015821 300 ALAFNMAVIGGNHIRLDRACPPRKKLKG---EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (399)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~~~k~~~~---~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~ 376 (399)
||.|+|..|.|+.|.|..+......... .........++|||+|||+.+++++|+++|+.| |.|..|.|+++.
T Consensus 147 Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~----G~i~~v~~~~d~ 222 (457)
T TIGR01622 147 ALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF----GDIEDVQLHRDP 222 (457)
T ss_pred HHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcC
Confidence 9999999999999999887532211110 001112336899999999999999999999999 999999999999
Q ss_pred CCCCCccEEEEEecCHHHHHhhC
Q 015821 377 HMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 377 ~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+|.++|||||+|.+.++|..||
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHH
Confidence 98999999999999999999885
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=2.5e-23 Score=207.31 Aligned_cols=154 Identities=25% Similarity=0.346 Sum_probs=126.0
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++|||+|||..+++++|..+|+.||.|..++++.+.. ++.++|||||+|.+.++|+.|+ .|
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----------------~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV-----------------TGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC-----------------CCCcCcEEEEEECCHHHHHHHHHHh
Confidence 46799999999999999999999999999998866442 2345699999999999999999 69
Q ss_pred cCceeee--eeeEEecCCCCccCCCC--------------CC--------------------------------------
Q 015821 304 NMAVIGG--NHIRLDRACPPRKKLKG--------------ED-------------------------------------- 329 (399)
Q Consensus 304 ng~~l~G--r~I~V~~a~~~~k~~~~--------------~~-------------------------------------- 329 (399)
||..+.| +.|.|.++..+...... ..
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQ 231 (352)
T ss_pred CCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhh
Confidence 9998877 56888877533210000 00
Q ss_pred -------------CC------------------ccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCC
Q 015821 330 -------------AP------------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (399)
Q Consensus 330 -------------~~------------------~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~t 378 (399)
.+ ......+|||+|||+.+++++|.++|++| |.|.+|+|++|+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f----G~v~~v~i~~d~~t 307 (352)
T TIGR01661 232 QHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF----GAVQNVKIIRDLTT 307 (352)
T ss_pred hcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeEcCCC
Confidence 00 00112369999999999999999999999 99999999999999
Q ss_pred CCCccEEEEEecCHHHHHhhC
Q 015821 379 RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 379 g~~kG~AFV~F~s~e~A~~AL 399 (399)
|.++|||||+|.+.++|.+||
T Consensus 308 ~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 308 NQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred CCccceEEEEECCHHHHHHHH
Confidence 999999999999999999986
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=1.3e-23 Score=222.82 Aligned_cols=144 Identities=22% Similarity=0.369 Sum_probs=126.6
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccC
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng 305 (399)
+|||+|||+++|+++|+++|+.||.|.+|+|+++.. +++++|||||.|.+.++|+.|| .+|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~-----------------t~~s~G~afV~F~~~~~A~~Al~~ln~ 64 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV-----------------TRRSLGYGYVNFQNPADAERALETMNF 64 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 699999999999999999999999999999977652 3446799999999999999999 6999
Q ss_pred ceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEE
Q 015821 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (399)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~A 385 (399)
..|.|+.|+|.|+...... ......+|||+|||.++++++|+++|+.| |.|..|+|+.+. +|.++|||
T Consensus 65 ~~i~gk~i~i~~s~~~~~~-------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~----G~i~~~~i~~~~-~g~skg~a 132 (562)
T TIGR01628 65 KRLGGKPIRIMWSQRDPSL-------RRSGVGNIFVKNLDKSVDNKALFDTFSKF----GNILSCKVATDE-NGKSRGYG 132 (562)
T ss_pred CEECCeeEEeecccccccc-------cccCCCceEEcCCCccCCHHHHHHHHHhc----CCcceeEeeecC-CCCcccEE
Confidence 9999999999997532111 12234689999999999999999999999 999999999985 58899999
Q ss_pred EEEecCHHHHHhhC
Q 015821 386 YVLFKTRDEEWEII 399 (399)
Q Consensus 386 FV~F~s~e~A~~AL 399 (399)
||+|.+.++|..||
T Consensus 133 fV~F~~~e~A~~Ai 146 (562)
T TIGR01628 133 FVHFEKEESAKAAI 146 (562)
T ss_pred EEEECCHHHHHHHH
Confidence 99999999999885
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=4.9e-23 Score=215.25 Aligned_cols=153 Identities=20% Similarity=0.386 Sum_probs=124.1
Q ss_pred cCCCCcCEEEEecCCCCCcHHHHHHHhcccC------------CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeE
Q 015821 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFG------------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287 (399)
Q Consensus 220 ~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G------------~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~A 287 (399)
......++|||||||+.+|+++|.+||..|+ .|..+.+ +.++|||
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~kg~a 226 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----------------------NKEKNFA 226 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----------------------CCCCCEE
Confidence 4456689999999999999999999999852 3333332 2346999
Q ss_pred EEeeCCHHHHHHHHHccCceeeeeeeEEecCCCCccCC--------CC------------CCCCccCcccceeecCCCCC
Q 015821 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKL--------KG------------EDAPLYDIKKTVFVGNLPFD 347 (399)
Q Consensus 288 FV~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~--------~~------------~~~~~~~~~~tLfV~NLp~~ 347 (399)
||+|.+.++|..||.|||..|.|+.|.|.+........ .. .........++|||+|||+.
T Consensus 227 fVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 306 (509)
T TIGR01642 227 FLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLY 306 (509)
T ss_pred EEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCC
Confidence 99999999999999999999999999998654221000 00 00011234579999999999
Q ss_pred CCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 348 ~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+++++|+++|+.| |.|..+.|+++..+|.++|||||+|.+.++|..||
T Consensus 307 ~~~~~l~~~f~~~----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~ 354 (509)
T TIGR01642 307 LGEDQIKELLESF----GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAI 354 (509)
T ss_pred CCHHHHHHHHHhc----CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHH
Confidence 9999999999999 99999999999989999999999999999999885
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-22 Score=191.71 Aligned_cols=148 Identities=23% Similarity=0.430 Sum_probs=128.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
..-|||+.|...++-+.|++.|..||+|.+++|+++. ++++++|||||.|.+.++|+.|| .|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~-----------------~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM-----------------NTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecc-----------------cCCcccceeEEeccchHHHHHHHHHh
Confidence 4569999999999999999999999999999998865 35567899999999999999999 79
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCC-------CCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecC
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGED-------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~-------~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~ 376 (399)
||+.|.+|.|+..|+..+........ .......++|||+|++..+++++|++.|++| |.|..|||+++
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f----G~I~EVRvFk~- 199 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF----GPIQEVRVFKD- 199 (321)
T ss_pred CCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC----CcceEEEEecc-
Confidence 99999999999999975431111110 2234567999999999999999999999999 99999999988
Q ss_pred CCCCCccEEEEEecCHHHHHhhC
Q 015821 377 HMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 377 ~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+|||||.|.+.++|..||
T Consensus 200 -----qGYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 200 -----QGYAFVRFETKEAAAHAI 217 (321)
T ss_pred -----cceEEEEecchhhHHHHH
Confidence 569999999999999986
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.87 E-value=1e-21 Score=208.32 Aligned_cols=153 Identities=23% Similarity=0.380 Sum_probs=129.3
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+++|+.||.|.+|.++.+. .+.++|||||.|.+.++|..|+ .
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~------------------~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG------------------SGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCcccEEEEEECCHHHHHHHHHH
Confidence 35779999999999999999999999999999986643 2345799999999999999999 6
Q ss_pred ccCceee----eeeeEEecCCCCccCCC---------CCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEE
Q 015821 303 FNMAVIG----GNHIRLDRACPPRKKLK---------GEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA 369 (399)
Q Consensus 303 lng~~l~----Gr~I~V~~a~~~~k~~~---------~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~ 369 (399)
+++..|. |+.|.|.++........ ...........+|||+||+..+++++|+++|+.| |.|..
T Consensus 239 l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~----G~i~~ 314 (562)
T TIGR01628 239 MNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC----GEITS 314 (562)
T ss_pred hCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc----CCeEE
Confidence 9999999 99999998865432210 0001112345789999999999999999999999 99999
Q ss_pred EEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 370 VRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 370 VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|+|+.+ .+|.++|||||+|.+.++|.+||
T Consensus 315 ~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~ 343 (562)
T TIGR01628 315 AKVMLD-EKGVSRGFGFVCFSNPEEANRAV 343 (562)
T ss_pred EEEEEC-CCCCcCCeEEEEeCCHHHHHHHH
Confidence 999999 57999999999999999999985
No 10
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.2e-21 Score=198.77 Aligned_cols=153 Identities=30% Similarity=0.425 Sum_probs=127.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.-.|.|+||||.+.+.+|..+|+.||.|..|.|++.+ +|.-+|||||.|....+|..|| .+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~------------------dgklcGFaFV~fk~~~dA~~Al~~~ 178 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK------------------DGKLCGFAFVQFKEKKDAEKALEFF 178 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC------------------CCCccceEEEEEeeHHHHHHHHHhc
Confidence 3569999999999999999999999999999986533 2334599999999999999999 59
Q ss_pred cCceeeeeeeEEecCCCCccCC---------------------------------------------C------------
Q 015821 304 NMAVIGGNHIRLDRACPPRKKL---------------------------------------------K------------ 326 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~---------------------------------------------~------------ 326 (399)
|+..|.||+|-|+|+.+...-. .
T Consensus 179 N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~ 258 (678)
T KOG0127|consen 179 NGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEES 258 (678)
T ss_pred cCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccc
Confidence 9999999999999984321000 0
Q ss_pred ------CCCC--C----------------ccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCc
Q 015821 327 ------GEDA--P----------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (399)
Q Consensus 327 ------~~~~--~----------------~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~k 382 (399)
.++. + ...-..+|||+||||++|+++|.++|++| |.|.++.|+.++.||+++
T Consensus 259 Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF----G~v~ya~iV~~k~T~~sk 334 (678)
T KOG0127|consen 259 EEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF----GEVKYAIIVKDKDTGHSK 334 (678)
T ss_pred cccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh----ccceeEEEEeccCCCCcc
Confidence 0000 0 00113699999999999999999999999 999999999999999999
Q ss_pred cEEEEEecCHHHHHhhC
Q 015821 383 GIAYVLFKTRDEEWEII 399 (399)
Q Consensus 383 G~AFV~F~s~e~A~~AL 399 (399)
|.|||.|.+..+|+.||
T Consensus 335 GtAFv~Fkt~~~~~~ci 351 (678)
T KOG0127|consen 335 GTAFVKFKTQIAAQNCI 351 (678)
T ss_pred cceEEEeccHHHHHHHH
Confidence 99999999999999886
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=5.6e-22 Score=196.64 Aligned_cols=154 Identities=19% Similarity=0.404 Sum_probs=129.7
Q ss_pred CCCCcCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHH
Q 015821 216 EGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (399)
Q Consensus 216 ~~~~~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e 295 (399)
...+..+.+.-++|||.+|..++|.+|+.+|.+||.|.+|.|++|+. ++.++|||||.|.+.+
T Consensus 25 ~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~-----------------t~~s~gcCFv~~~trk 87 (510)
T KOG0144|consen 25 DHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKS-----------------TGQSKGCCFVKYYTRK 87 (510)
T ss_pred CCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccc-----------------cCcccceEEEEeccHH
Confidence 33444455677899999999999999999999999999999988763 3456799999999999
Q ss_pred HHHHHH-Hcc-Cceeee--eeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEE
Q 015821 296 STEAAL-AFN-MAVIGG--NHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR 371 (399)
Q Consensus 296 ~A~~Al-~ln-g~~l~G--r~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~Vr 371 (399)
+|.+|+ .|+ ...|.| .+|.|.++...... ....++|||+-|+..+++.+|+++|++| |.|+.|+
T Consensus 88 ~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er--------~~~e~KLFvg~lsK~~te~evr~iFs~f----G~Ied~~ 155 (510)
T KOG0144|consen 88 EADEAINALHNQKTLPGMHHPVQVKYADGERER--------IVEERKLFVGMLSKQCTENEVREIFSRF----GHIEDCY 155 (510)
T ss_pred HHHHHHHHhhcccccCCCCcceeecccchhhhc--------cccchhhhhhhccccccHHHHHHHHHhh----Cccchhh
Confidence 999999 554 446655 56788887643321 1235899999999999999999999999 9999999
Q ss_pred EeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 372 VIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 372 I~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|++|.. |.+||||||+|.+.+.|..||
T Consensus 156 ilrd~~-~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 156 ILRDPD-GLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred heeccc-ccccceeEEEEehHHHHHHHH
Confidence 999976 999999999999999999886
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.86 E-value=2.6e-21 Score=204.10 Aligned_cols=141 Identities=21% Similarity=0.309 Sum_probs=117.0
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++++++|+.+|++||.|.+|+|+++. ++.++|||||+|.+.++|+.|| .
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~------------------sG~sRGfaFV~F~~~e~A~~Ai~~ 118 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF------------------SGQNRGYAFVTFCGKEEAKEAVKL 118 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC------------------CCCccceEEEEeCCHHHHHHHHHH
Confidence 45889999999999999999999999999999997752 3456799999999999999999 6
Q ss_pred ccCceee-eeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCC
Q 015821 303 FNMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (399)
Q Consensus 303 lng~~l~-Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~ 381 (399)
||+..|. |+.|.|.++. ..++|||+|||.++++++|.++|..+.. |.+..|.+......+++
T Consensus 119 lng~~i~~Gr~l~V~~S~---------------~~~rLFVgNLP~~~TeeeL~eeFskv~e--gvv~vIv~~~~~~kgKn 181 (578)
T TIGR01648 119 LNNYEIRPGRLLGVCISV---------------DNCRLFVGGIPKNKKREEILEEFSKVTE--GVVDVIVYHSAADKKKN 181 (578)
T ss_pred cCCCeecCCccccccccc---------------cCceeEeecCCcchhhHHHHHHhhcccC--CceEEEEeccccccCcc
Confidence 9999885 7877776653 2478999999999999999999999832 33333333334456789
Q ss_pred ccEEEEEecCHHHHHhhC
Q 015821 382 KGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 382 kG~AFV~F~s~e~A~~AL 399 (399)
+|||||+|.++++|..|+
T Consensus 182 RGFAFVeF~s~edAa~Ai 199 (578)
T TIGR01648 182 RGFAFVEYESHRAAAMAR 199 (578)
T ss_pred CceEEEEcCCHHHHHHHH
Confidence 999999999999998874
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.86 E-value=6.1e-21 Score=199.27 Aligned_cols=144 Identities=21% Similarity=0.254 Sum_probs=119.6
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH--
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-- 302 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~-- 302 (399)
+++|||+|||+++|+++|+++|+.||.|.+|.|+. ++|||||+|.+.++|+.|+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----------------------~k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----------------------GKRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----------------------CCCEEEEEeCchHHHHHHHHHh
Confidence 68999999999999999999999999999998842 24899999999999999994
Q ss_pred -ccCceeeeeeeEEecCCCCccCCCCC---CCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCC
Q 015821 303 -FNMAVIGGNHIRLDRACPPRKKLKGE---DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (399)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~~~~---~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~t 378 (399)
+++..|.|+.|.|.++.......... .........+|||+||++.+++++|+++|+.| |.|..|.|+++..
T Consensus 59 ~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~----G~V~~v~i~~~~~- 133 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPY----GKVLRIVTFTKNN- 133 (481)
T ss_pred hcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhcc----CCEEEEEEEecCC-
Confidence 57899999999999986543211110 01111233579999999999999999999999 9999999987642
Q ss_pred CCCccEEEEEecCHHHHHhhC
Q 015821 379 RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 379 g~~kG~AFV~F~s~e~A~~AL 399 (399)
.|+|||+|.+.++|.+||
T Consensus 134 ---~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 134 ---VFQALVEFESVNSAQHAK 151 (481)
T ss_pred ---ceEEEEEECCHHHHHHHH
Confidence 479999999999999985
No 14
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=2.6e-21 Score=173.44 Aligned_cols=149 Identities=24% Similarity=0.434 Sum_probs=129.2
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
..+..|||||||+..++++.|+++|-++|+|.+|.++.+..++ .+.|||||+|.+.++|+-|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~-----------------~~qGygF~Ef~~eedadYAi 68 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ-----------------KHQGYGFAEFRTEEDADYAI 68 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc-----------------cccceeEEEEechhhhHHHH
Confidence 3456899999999999999999999999999999998776532 34699999999999999999
Q ss_pred H-ccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEE-EEEeecCCCC
Q 015821 302 A-FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMR 379 (399)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~-VrI~~d~~tg 379 (399)
+ ||+..|.|++|+|..+....+ ..+....|||+||.+.+++..|...|+.| |.|.. -.|++++.||
T Consensus 69 kiln~VkLYgrpIrv~kas~~~~--------nl~vganlfvgNLd~~vDe~~L~dtFsaf----G~l~~~P~i~rd~~tg 136 (203)
T KOG0131|consen 69 KILNMVKLYGRPIRVNKASAHQK--------NLDVGANLFVGNLDPEVDEKLLYDTFSAF----GVLISPPKIMRDPDTG 136 (203)
T ss_pred HHHHHHHhcCceeEEEecccccc--------cccccccccccccCcchhHHHHHHHHHhc----cccccCCcccccccCC
Confidence 5 899999999999999872221 13344789999999999999999999999 66655 4789999999
Q ss_pred CCccEEEEEecCHHHHHhhC
Q 015821 380 VGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 380 ~~kG~AFV~F~s~e~A~~AL 399 (399)
.++|||||.|.+.+.+.+||
T Consensus 137 ~~~~~g~i~~~sfeasd~ai 156 (203)
T KOG0131|consen 137 NPKGFGFINYASFEASDAAI 156 (203)
T ss_pred CCCCCeEEechhHHHHHHHH
Confidence 99999999999999998875
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.85 E-value=1.9e-20 Score=195.52 Aligned_cols=149 Identities=16% Similarity=0.246 Sum_probs=121.7
Q ss_pred CCcCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~-~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
...++|||+|||+ .+|+++|+++|+.||.|.+|+|+... +|||||+|.+.++|..||
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----------------------~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----------------------KETALIEMADPYQAQLAL 330 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----------------------CCEEEEEECCHHHHHHHH
Confidence 3568999999998 69999999999999999999985531 489999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCccCC----C--------CCC----------------CCccCcccceeecCCCCCCCHHH
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRKKL----K--------GED----------------APLYDIKKTVFVGNLPFDVKDEE 352 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k~~----~--------~~~----------------~~~~~~~~tLfV~NLp~~~teed 352 (399)
.|||..|.|+.|.|.++....... . .+. .....++.+|||+|||..+++++
T Consensus 331 ~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~ 410 (481)
T TIGR01649 331 THLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEED 410 (481)
T ss_pred HHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHH
Confidence 699999999999999875321000 0 000 01124567999999999999999
Q ss_pred HHHHhhccCCCCCC--eEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 353 IYQLFCGLNDLESS--VEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 353 L~~~Fs~f~~~~G~--I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|+++|+.| |. |..|++.... +..+|+|||+|.+.++|..||
T Consensus 411 L~~lF~~~----G~~~i~~ik~~~~~--~~~~~~gfVeF~~~e~A~~Al 453 (481)
T TIGR01649 411 LKELFAEN----GVHKVKKFKFFPKD--NERSKMGLLEWESVEDAVEAL 453 (481)
T ss_pred HHHHHHhc----CCccceEEEEecCC--CCcceeEEEEcCCHHHHHHHH
Confidence 99999999 76 8888886553 336899999999999999886
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=8.3e-21 Score=178.20 Aligned_cols=145 Identities=20% Similarity=0.349 Sum_probs=132.1
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
...|.|.-||..+|+++|+.+|+..|+|++|.+++++. +|.+-||+||.|.++.+|++|+ .|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKi-----------------tGqSLGYGFVNYv~p~DAe~Aintl 103 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKI-----------------TGQSLGYGFVNYVRPKDAEKAINTL 103 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccc-----------------cccccccceeeecChHHHHHHHhhh
Confidence 45699999999999999999999999999999988874 3556799999999999999999 79
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG 383 (399)
||-.+..+.|.|.++.|.... -....|||.+||..+|..+|.++|++| |.|..-||+.|..+|.++|
T Consensus 104 NGLrLQ~KTIKVSyARPSs~~---------Ik~aNLYvSGlPktMtqkelE~iFs~f----GrIItSRiL~dqvtg~srG 170 (360)
T KOG0145|consen 104 NGLRLQNKTIKVSYARPSSDS---------IKDANLYVSGLPKTMTQKELEQIFSPF----GRIITSRILVDQVTGLSRG 170 (360)
T ss_pred cceeeccceEEEEeccCChhh---------hcccceEEecCCccchHHHHHHHHHHh----hhhhhhhhhhhcccceecc
Confidence 999999999999999875422 234689999999999999999999999 9999999999999999999
Q ss_pred EEEEEecCHHHHHhhC
Q 015821 384 IAYVLFKTRDEEWEII 399 (399)
Q Consensus 384 ~AFV~F~s~e~A~~AL 399 (399)
.|||.|..+.+|+.||
T Consensus 171 VgFiRFDKr~EAe~AI 186 (360)
T KOG0145|consen 171 VGFIRFDKRIEAEEAI 186 (360)
T ss_pred eeEEEecchhHHHHHH
Confidence 9999999999999886
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=2.4e-20 Score=185.82 Aligned_cols=141 Identities=23% Similarity=0.371 Sum_probs=123.4
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
..-+-||||.||.++.+++|.-+|.+.|+|-++||+.+++ +|.++|||||.|.+.+.|+.|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~-----------------sG~nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF-----------------SGDNRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc-----------------CCCCcceEEEEeecHHHHHHHHH
Confidence 4457799999999999999999999999999999999875 4556799999999999999999
Q ss_pred HccCcee-eeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecC-CCC
Q 015821 302 AFNMAVI-GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP-HMR 379 (399)
Q Consensus 302 ~lng~~l-~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~-~tg 379 (399)
.||+..| .|+.|.|+.+. ..++|||+|+|.++++++|.+.|...+. | |..|.|...+ +..
T Consensus 144 ~lnn~Eir~GK~igvc~Sv---------------an~RLFiG~IPK~k~keeIlee~~kVte--G-VvdVivy~~p~dk~ 205 (506)
T KOG0117|consen 144 ELNNYEIRPGKLLGVCVSV---------------ANCRLFIGNIPKTKKKEEILEEMKKVTE--G-VVDVIVYPSPDDKT 205 (506)
T ss_pred HhhCccccCCCEeEEEEee---------------ecceeEeccCCccccHHHHHHHHHhhCC--C-eeEEEEecCccccc
Confidence 6999988 68999999875 3489999999999999999999999854 4 6667666655 568
Q ss_pred CCccEEEEEecCHHHHHhh
Q 015821 380 VGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 380 ~~kG~AFV~F~s~e~A~~A 398 (399)
++||||||+|.++..|..|
T Consensus 206 KNRGFaFveYe~H~~Aa~a 224 (506)
T KOG0117|consen 206 KNRGFAFVEYESHRAAAMA 224 (506)
T ss_pred cccceEEEEeecchhHHHH
Confidence 8999999999999888654
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.84 E-value=5e-20 Score=192.61 Aligned_cols=155 Identities=18% Similarity=0.241 Sum_probs=123.2
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+.+|+++|.++|+.||.|..|.|+.++ .+|.++|||||+|.+.++|..|| .
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-----------------~~g~~~g~afv~f~~~~~a~~A~~~ 356 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI-----------------ATGLSKGYAFCEYKDPSVTDVAIAA 356 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----------------CCCCcCeEEEEEECCHHHHHHHHHH
Confidence 45789999999999999999999999999999986643 13456799999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCCCccCCCCCC-------------------CCccCcccceeecCCCCCC----------CHHHH
Q 015821 303 FNMAVIGGNHIRLDRACPPRKKLKGED-------------------APLYDIKKTVFVGNLPFDV----------KDEEI 353 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~-------------------~~~~~~~~tLfV~NLp~~~----------teedL 353 (399)
|||..|.|+.|.|.++........... .....++.+|+|.||...- ..++|
T Consensus 357 l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl 436 (509)
T TIGR01642 357 LNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDV 436 (509)
T ss_pred cCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHH
Confidence 999999999999999864322111000 0012256789999996421 23678
Q ss_pred HHHhhccCCCCCCeEEEEEeecC---CCCCCccEEEEEecCHHHHHhhC
Q 015821 354 YQLFCGLNDLESSVEAVRVIRHP---HMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 354 ~~~Fs~f~~~~G~I~~VrI~~d~---~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+++|+.| |.|..|.|+++. .++.+.|+|||+|.+.++|..||
T Consensus 437 ~~~f~~~----G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~ 481 (509)
T TIGR01642 437 KTEFSKY----GPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAM 481 (509)
T ss_pred HHHHHhc----CCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHH
Confidence 9999999 999999998752 34567899999999999999986
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.4e-20 Score=190.99 Aligned_cols=152 Identities=21% Similarity=0.321 Sum_probs=127.8
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hcc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ln 304 (399)
.||||++||+.+|.++|.++|+.+|+|..+.+++.+ + ++.++|||||.|.-.++++.|+ .++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~----g-------------s~~~RGfgfVtFam~ED~qrA~~e~~ 68 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNK----G-------------SSEKRGFGFVTFAMEEDVQRALAETE 68 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCC----C-------------cccccCccceeeehHhHHHHHHHHhh
Confidence 789999999999999999999999999999886544 2 2346799999999999999999 689
Q ss_pred CceeeeeeeEEecCCCCccCCCCCC-----------------CCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCe
Q 015821 305 MAVIGGNHIRLDRACPPRKKLKGED-----------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV 367 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~-----------------~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I 367 (399)
+..|.|+.|+|..+.+......... .....+...|.|+||||.+...+|..+|+.| |.|
T Consensus 69 ~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~----G~V 144 (678)
T KOG0127|consen 69 QSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF----GKV 144 (678)
T ss_pred cCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc----ceE
Confidence 9999999999999976433221100 0112246789999999999999999999999 999
Q ss_pred EEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 368 EAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 368 ~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..|.|++..+.+ -.|||||+|....+|..||
T Consensus 145 ~Ei~IP~k~dgk-lcGFaFV~fk~~~dA~~Al 175 (678)
T KOG0127|consen 145 VEIVIPRKKDGK-LCGFAFVQFKEKKDAEKAL 175 (678)
T ss_pred EEEEcccCCCCC-ccceEEEEEeeHHHHHHHH
Confidence 999999988744 4599999999999999886
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.4e-19 Score=176.43 Aligned_cols=154 Identities=19% Similarity=0.376 Sum_probs=129.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
-+.||||.|.+.+.++.|+..|..||+|.+|.+.++|. +++++|||||+|.-++.|+.|+ .+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~-----------------T~kHKgFAFVEYEvPEaAqLAlEqM 175 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-----------------TGKHKGFAFVEYEVPEAAQLALEQM 175 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccc-----------------cccccceEEEEEeCcHHHHHHHHHh
Confidence 36799999999999999999999999999999988874 4567899999999999999999 69
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCC--CCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCC
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGED--APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~--~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~ 381 (399)
||..++||.|.|.+.......+..-+ ......-++|||..++++++++||+..|+-| |.|..|.+.+++..+.+
T Consensus 176 Ng~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF----G~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 176 NGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRGH 251 (544)
T ss_pred ccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh----cceeeEEeeccCCCCCc
Confidence 99999999999997654221111000 0001134789999999999999999999999 99999999999998999
Q ss_pred ccEEEEEecCHHHHHhhC
Q 015821 382 KGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 382 kG~AFV~F~s~e~A~~AL 399 (399)
+|||||+|.+..+...||
T Consensus 252 kGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred cceeeEEeccccchHHHh
Confidence 999999999876665553
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=6.1e-19 Score=184.03 Aligned_cols=155 Identities=23% Similarity=0.338 Sum_probs=128.0
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccC
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng 305 (399)
+|||.||++++|.++|..+|...|.|.+|.|...+... +--.|+|||||+|.+.++|+.|+ .|+|
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~--------------~k~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPA--------------NKYLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccc--------------ccccccceeEEEecCHHHHHHHHHHhcC
Confidence 39999999999999999999999999999885433111 11246799999999999999999 6999
Q ss_pred ceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEE
Q 015821 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (399)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~A 385 (399)
+.|+|+.|.|.++.......-+...+.....+.|+|+|||+..+..+|+.+|..| |.|..|+|+.....+.++|||
T Consensus 583 tvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF----GqlksvRlPKK~~k~a~rGF~ 658 (725)
T KOG0110|consen 583 TVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF----GQLKSVRLPKKIGKGAHRGFG 658 (725)
T ss_pred ceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc----cceeeeccchhhcchhhccce
Confidence 9999999999998722221111222223346799999999999999999999999 999999999986667889999
Q ss_pred EEEecCHHHHHhhC
Q 015821 386 YVLFKTRDEEWEII 399 (399)
Q Consensus 386 FV~F~s~e~A~~AL 399 (399)
||.|-++.+|.+|+
T Consensus 659 Fv~f~t~~ea~nA~ 672 (725)
T KOG0110|consen 659 FVDFLTPREAKNAF 672 (725)
T ss_pred eeeccCcHHHHHHH
Confidence 99999999998874
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.77 E-value=4.4e-18 Score=179.73 Aligned_cols=145 Identities=23% Similarity=0.362 Sum_probs=113.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCC-eeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~-I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
.++|||+|||+++|+++|.++|+.++. |..+.+...+ . ..++++|||||+|.++++|..|+ .
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~-~---------------~kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSA-A---------------DKKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccc-c---------------ccCccCceEEEEcCCHHHHHHHHHH
Confidence 588999999999999999999999864 4444332111 0 12346799999999999999998 4
Q ss_pred cc--CceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCC
Q 015821 303 FN--MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (399)
Q Consensus 303 ln--g~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~ 380 (399)
|+ ...+.|+.|.|.++.+..... .......++|||+|||+.+++++|+++|+.|.. |.|..|.+++
T Consensus 202 L~~gki~l~Gr~I~VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~--G~I~rV~~~r------ 269 (578)
T TIGR01648 202 LMPGRIQLWGHVIAVDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKP--GKVERVKKIR------ 269 (578)
T ss_pred hhccceEecCceEEEEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCC--CceEEEEeec------
Confidence 54 346789999999987543211 111334578999999999999999999999844 7899998753
Q ss_pred CccEEEEEecCHHHHHhhC
Q 015821 381 GKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 381 ~kG~AFV~F~s~e~A~~AL 399 (399)
+||||+|.+.++|.+||
T Consensus 270 --gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 270 --DYAFVHFEDREDAVKAM 286 (578)
T ss_pred --CeEEEEeCCHHHHHHHH
Confidence 49999999999999985
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.76 E-value=1.7e-17 Score=171.35 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=118.1
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++|||+|||+.+|+++|+.+|+.||.|..|.|+.++. +|.++|||||+|.+.++|..|+ .|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~-----------------~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE-----------------TGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----------------CCccceEEEEEECCHHHHHHHHHhc
Confidence 68999999999999999999999999999999976542 2346799999999999999999 69
Q ss_pred cCceeeeeeeEEecCCCCccCC---------------------------------CC---------------------C-
Q 015821 304 NMAVIGGNHIRLDRACPPRKKL---------------------------------KG---------------------E- 328 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~---------------------------------~~---------------------~- 328 (399)
||..|.|+.|.|.++....... .. .
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 9999999999999953210000 00 0
Q ss_pred -----CCC---------------------ccCcccceeecCCCCCCC----------HHHHHHHhhccCCCCCCeEEEEE
Q 015821 329 -----DAP---------------------LYDIKKTVFVGNLPFDVK----------DEEIYQLFCGLNDLESSVEAVRV 372 (399)
Q Consensus 329 -----~~~---------------------~~~~~~tLfV~NLp~~~t----------eedL~~~Fs~f~~~~G~I~~VrI 372 (399)
..+ ...+..+|+|.||....+ .+||.+.|+.| |.|..|.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~----G~v~~v~v 404 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY----GGVVHIYV 404 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc----CCeeEEEE
Confidence 000 113457889999854443 36899999999 99999998
Q ss_pred eecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 373 IRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 373 ~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.. ....|++||.|.++++|..||
T Consensus 405 ~~----~~~~G~~fV~F~~~e~A~~A~ 427 (457)
T TIGR01622 405 DT----KNSAGKIYLKFSSVDAALAAF 427 (457)
T ss_pred eC----CCCceeEEEEECCHHHHHHHH
Confidence 64 346799999999999999985
No 24
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.5e-18 Score=170.62 Aligned_cols=129 Identities=24% Similarity=0.430 Sum_probs=117.2
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccC
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng 305 (399)
.|||| +++|+..|.++|+.+|+|++|++.++. + +-|||||.|.++++|.+|| ++|.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-------------------slgy~yvnf~~~~da~~A~~~~n~ 59 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-------------------SLGYAYVNFQQPADAERALDTMNF 59 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-------------------ccceEEEecCCHHHHHHHHHHcCC
Confidence 59999 999999999999999999999997754 2 3499999999999999999 7999
Q ss_pred ceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEE
Q 015821 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (399)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~A 385 (399)
..+.|++|+|.|+.... ..|||.||+++++..+|.++|+.| |.|.+|++.++.+ | ++||
T Consensus 60 ~~~~~~~~rim~s~rd~--------------~~~~i~nl~~~~~~~~~~d~f~~~----g~ilS~kv~~~~~-g-~kg~- 118 (369)
T KOG0123|consen 60 DVLKGKPIRIMWSQRDP--------------SLVFIKNLDESIDNKSLYDTFSEF----GNILSCKVATDEN-G-SKGY- 118 (369)
T ss_pred cccCCcEEEeehhccCC--------------ceeeecCCCcccCcHHHHHHHHhh----cCeeEEEEEEcCC-C-ceee-
Confidence 99999999999986321 229999999999999999999999 9999999999965 6 9999
Q ss_pred EEEecCHHHHHhhC
Q 015821 386 YVLFKTRDEEWEII 399 (399)
Q Consensus 386 FV~F~s~e~A~~AL 399 (399)
||+|.+.++|.+||
T Consensus 119 FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 119 FVQFESEESAKKAI 132 (369)
T ss_pred EEEeCCHHHHHHHH
Confidence 99999999999986
No 25
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=2.8e-18 Score=168.72 Aligned_cols=152 Identities=20% Similarity=0.359 Sum_probs=133.0
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
+.++|||++|+|.+|++.|+.+|.+||.|..|.+++++.+ ++++||+||+|.+++.+..+|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t-----------------~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST-----------------GRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC-----------------CCcccccceecCCCcchheeecc
Confidence 4788999999999999999999999999999999888742 34569999999999999999987
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG 383 (399)
..+.|.|+.|.+..+.+......... .....+|||++||.++++.+|+++|.+| |.|..+-++.|..+..++|
T Consensus 68 ~~h~~dgr~ve~k~av~r~~~~~~~~---~~~tkkiFvGG~~~~~~e~~~r~yfe~~----g~v~~~~~~~d~~~~~~rg 140 (311)
T KOG4205|consen 68 RTHKLDGRSVEPKRAVSREDQTKVGR---HLRTKKIFVGGLPPDTTEEDFKDYFEQF----GKVADVVIMYDKTTSRPRG 140 (311)
T ss_pred cccccCCccccceeccCccccccccc---ccceeEEEecCcCCCCchHHHhhhhhcc----ceeEeeEEeeccccccccc
Confidence 78889999999999987654333222 2256799999999999999999999999 8999999999999999999
Q ss_pred EEEEEecCHHHHHhhC
Q 015821 384 IAYVLFKTRDEEWEII 399 (399)
Q Consensus 384 ~AFV~F~s~e~A~~AL 399 (399)
|+||+|.+.+++..++
T Consensus 141 Fgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 141 FGFVTFDSEDSVDKVT 156 (311)
T ss_pred ceeeEeccccccceec
Confidence 9999999998887653
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=7.9e-18 Score=167.97 Aligned_cols=146 Identities=24% Similarity=0.373 Sum_probs=118.5
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCC-eeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~-I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.-+.+.|||||||...++++|.+.|++.++ |+.|.|...+. +..+|||||||+|.++..|..|
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~----------------dk~KNRGFaFveYe~H~~Aa~a 224 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPD----------------DKTKNRGFAFVEYESHRAAAMA 224 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCcc----------------ccccccceEEEEeecchhHHHH
Confidence 345788999999999999999999999875 45566644332 1235789999999999999888
Q ss_pred H-H-ccCc-eeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCC
Q 015821 301 L-A-FNMA-VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (399)
Q Consensus 301 l-~-lng~-~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~ 377 (399)
- + +++. .+.|+.|.|.|+.+.... + .........|||+||+.++|++.|..+|++| |.|+.|..++|
T Consensus 225 RrKl~~g~~klwgn~~tVdWAep~~e~---d-ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~----G~veRVkk~rD-- 294 (506)
T KOG0117|consen 225 RRKLMPGKIKLWGNAITVDWAEPEEEP---D-EDTMSKVKVLYVRNLMESTTEETLKKLFNEF----GKVERVKKPRD-- 294 (506)
T ss_pred HhhccCCceeecCCcceeeccCcccCC---C-hhhhhheeeeeeeccchhhhHHHHHHHHHhc----cceEEeecccc--
Confidence 7 3 4444 789999999999864321 1 1123455789999999999999999999999 99999988876
Q ss_pred CCCCccEEEEEecCHHHHHhhC
Q 015821 378 MRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 378 tg~~kG~AFV~F~s~e~A~~AL 399 (399)
||||.|.++++|.+||
T Consensus 295 ------YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 295 ------YAFVHFAEREDAVKAM 310 (506)
T ss_pred ------eeEEeecchHHHHHHH
Confidence 9999999999999986
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.72 E-value=1.6e-18 Score=176.80 Aligned_cols=159 Identities=19% Similarity=0.327 Sum_probs=133.6
Q ss_pred cCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 220 ~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
.++++.||||+-.|+..++.-+|.+||+.+|.|..|+|+.+.. ++.++|.|||+|.+.+++..
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~-----------------s~rskgi~Yvef~D~~sVp~ 236 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN-----------------SRRSKGIAYVEFCDEQSVPL 236 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc-----------------chhhcceeEEEEecccchhh
Confidence 4567789999999999999999999999999999999977552 34467999999999999999
Q ss_pred HHHccCceeeeeeeEEecCCCCccCCCC-----CCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEee
Q 015821 300 ALAFNMAVIGGNHIRLDRACPPRKKLKG-----EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR 374 (399)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~~~k~~~~-----~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~ 374 (399)
||.|.|+.+.|.+|.|+........... +......+-..|||+||++++++++|+.+|.+| |.|..|.+++
T Consensus 237 aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf----g~Ie~v~l~~ 312 (549)
T KOG0147|consen 237 AIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF----GKIENVQLTK 312 (549)
T ss_pred HhhhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCc----ccceeeeecc
Confidence 9999999999999999987532211100 000011122339999999999999999999999 9999999999
Q ss_pred cCCCCCCccEEEEEecCHHHHHhhC
Q 015821 375 HPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 375 d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|..||.++|||||+|.+.++|..|+
T Consensus 313 d~~tG~skgfGfi~f~~~~~ar~a~ 337 (549)
T KOG0147|consen 313 DSETGRSKGFGFITFVNKEDARKAL 337 (549)
T ss_pred ccccccccCcceEEEecHHHHHHHH
Confidence 9989999999999999999999884
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=3.2e-17 Score=154.22 Aligned_cols=154 Identities=27% Similarity=0.315 Sum_probs=125.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
...|||++||..+|..+|..+|+.||.|..-||+.+. .+|.++|.|||.|....+|+.|| .|
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq-----------------vtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ-----------------VTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc-----------------ccceecceeEEEecchhHHHHHHHhc
Confidence 3559999999999999999999999999766664443 24567799999999999999999 69
Q ss_pred cCceeee--eeeEEecCCCCccCC-------------------------CC--C-----------CCC------------
Q 015821 304 NMAVIGG--NHIRLDRACPPRKKL-------------------------KG--E-----------DAP------------ 331 (399)
Q Consensus 304 ng~~l~G--r~I~V~~a~~~~k~~-------------------------~~--~-----------~~~------------ 331 (399)
||+.-.| .+|.|.++..|.... +. + -.|
T Consensus 190 NG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~ 269 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGV 269 (360)
T ss_pred cCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeee
Confidence 9997655 568898885432110 00 0 000
Q ss_pred ----ccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 332 ----LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 332 ----~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
......+|||-||.+++++.-|.++|.+| |.|..|.|++|..|++++|||||++.+.++|..||
T Consensus 270 ~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF----GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi 337 (360)
T KOG0145|consen 270 NLPGGPGGGWCIFVYNLSPDADESILWQLFGPF----GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 337 (360)
T ss_pred ccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc----cceeeEEEEecCCcccccceeEEEecchHHHHHHH
Confidence 01235799999999999999999999999 99999999999999999999999999999998875
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5.5e-17 Score=163.94 Aligned_cols=147 Identities=24% Similarity=0.380 Sum_probs=127.1
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccC
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng 305 (399)
.|||.||+.+++..+|.++|+.||.|++|++.++.. | ++|| ||+|.++++|++|+ .+||
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~------------------g-~kg~-FV~f~~e~~a~~ai~~~ng 137 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN------------------G-SKGY-FVQFESEESAKKAIEKLNG 137 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC------------------C-ceee-EEEeCCHHHHHHHHHHhcC
Confidence 399999999999999999999999999999977652 2 5699 99999999999999 6999
Q ss_pred ceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEE
Q 015821 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (399)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~A 385 (399)
..+.|+.|.|............... ....-..+||.|++.++++..|..+|..| |.|.++.++.+.. |.++||+
T Consensus 138 ~ll~~kki~vg~~~~~~er~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~----g~i~s~~v~~~~~-g~~~~~g 211 (369)
T KOG0123|consen 138 MLLNGKKIYVGLFERKEEREAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAY----GSITSVAVMRDSI-GKSKGFG 211 (369)
T ss_pred cccCCCeeEEeeccchhhhcccccc-hhhhhhhhheeccccccchHHHHHhhccc----CcceEEEEeecCC-CCCCCcc
Confidence 9999999999998765433322222 23345789999999999999999999999 9999999999964 7899999
Q ss_pred EEEecCHHHHHhhC
Q 015821 386 YVLFKTRDEEWEII 399 (399)
Q Consensus 386 FV~F~s~e~A~~AL 399 (399)
||.|.++++|..|+
T Consensus 212 fv~f~~~e~a~~av 225 (369)
T KOG0123|consen 212 FVNFENPEDAKKAV 225 (369)
T ss_pred ceeecChhHHHHHH
Confidence 99999999998774
No 30
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.70 E-value=4.2e-17 Score=155.49 Aligned_cols=125 Identities=19% Similarity=0.377 Sum_probs=114.3
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH-ccC
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~-lng 305 (399)
.|||||||..+++.+|+.+|.+||.|.+|.|+. .||||..++...+.-|+. |||
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------------------------NYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK-------------------------NYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec-------------------------ccceEEeecccccHHHHhhccc
Confidence 599999999999999999999999999999932 499999999999999995 999
Q ss_pred ceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEE
Q 015821 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (399)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~A 385 (399)
..|+|..|.|..+..+. ..+.+|+|+||.+.++.++|+..|+.| |.|..|.|++| |+
T Consensus 59 YtLhg~nInVeaSksKs-----------k~stkl~vgNis~tctn~ElRa~fe~y----gpviecdivkd--------y~ 115 (346)
T KOG0109|consen 59 YTLHGVNINVEASKSKS-----------KASTKLHVGNISPTCTNQELRAKFEKY----GPVIECDIVKD--------YA 115 (346)
T ss_pred ceecceEEEEEeccccC-----------CCccccccCCCCccccCHHHhhhhccc----CCceeeeeecc--------ee
Confidence 99999999999987652 246899999999999999999999999 89999999877 99
Q ss_pred EEEecCHHHHHhhC
Q 015821 386 YVLFKTRDEEWEII 399 (399)
Q Consensus 386 FV~F~s~e~A~~AL 399 (399)
||.|.-.++|..||
T Consensus 116 fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 116 FVHFDRAEDAVEAI 129 (346)
T ss_pred EEEEeeccchHHHH
Confidence 99999999888775
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.66 E-value=1.5e-15 Score=153.58 Aligned_cols=150 Identities=22% Similarity=0.308 Sum_probs=118.6
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
..-|-+++|||.+|+++|++||+.|+ |.++.+.+. +|+..|-|||+|.+.+++++||+.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-------------------~Gr~sGeA~Ve~~seedv~~Alkkd 69 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-------------------NGRPSGEAYVEFTSEEDVEKALKKD 69 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-------------------CCCcCcceEEEeechHHHHHHHHhh
Confidence 45689999999999999999999998 677666332 2445699999999999999999999
Q ss_pred CceeeeeeeEEecCCCCccCC--CCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeE-EEEEeecCCCCCC
Q 015821 305 MAVIGGNHIRLDRACPPRKKL--KGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE-AVRVIRHPHMRVG 381 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~--~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~-~VrI~~d~~tg~~ 381 (399)
...+..|.|.|-.+....... +............|.+++||+.||++||.+||+.... |. .|.++.++. +++
T Consensus 70 R~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I----v~~gi~l~~d~r-gR~ 144 (510)
T KOG4211|consen 70 RESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI----VPDGILLPMDQR-GRP 144 (510)
T ss_pred HHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc----cccceeeeccCC-CCc
Confidence 999999999998875432211 1111111235678999999999999999999998732 22 355677765 889
Q ss_pred ccEEEEEecCHHHHHhhC
Q 015821 382 KGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 382 kG~AFV~F~s~e~A~~AL 399 (399)
.|-|||+|++.+.|+.||
T Consensus 145 tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 145 TGEAFVQFESQESAEIAL 162 (510)
T ss_pred ccceEEEecCHHHHHHHH
Confidence 999999999999999986
No 32
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.2e-15 Score=137.38 Aligned_cols=146 Identities=21% Similarity=0.312 Sum_probs=118.2
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||.++-+.+|..+|.+||.|..|.|...+ +. -+||||+|.++.+|+-||
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~----g~----------------ppfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP----GP----------------PPFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC----CC----------------CCeeEEEecCccchhhhhh
Confidence 346899999999999999999999999999999883221 11 269999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCccCCC----------C-------CCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPPRKKLK----------G-------EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLE 364 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~----------~-------~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~ 364 (399)
..+|..++|..|+|.++..-..... + ..++.......|.|.+||.+.+++||+.++...
T Consensus 64 gRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea---- 139 (241)
T KOG0105|consen 64 GRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA---- 139 (241)
T ss_pred cccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh----
Confidence 6999999999999999864321110 0 012334456789999999999999999999998
Q ss_pred CCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 365 SSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 365 G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|.|....+.+|- ++.|.|-..++..-||
T Consensus 140 GdvCfadv~rDg-------~GvV~~~r~eDMkYAv 167 (241)
T KOG0105|consen 140 GDVCFADVQRDG-------VGVVEYLRKEDMKYAV 167 (241)
T ss_pred CCeeeeeeeccc-------ceeeeeeehhhHHHHH
Confidence 999999998872 7889998888876553
No 33
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.2e-15 Score=144.08 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=58.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.|||-.||....+.+|.++|-.| |.|.+..++.|+.|+.+++||||.|.++.+|+.||
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PF----GhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAI 344 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPF----GHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAI 344 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccc----cceeeeeeeehhccccccceeeEecCCchhHHHHH
Confidence 46899999999999999999999999 99999999999999999999999999999999886
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=2.1e-14 Score=127.29 Aligned_cols=84 Identities=19% Similarity=0.363 Sum_probs=73.7
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+++|.+||.|.+|.|+.++. ++.++|||||+|.+.++|+.||
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~kGfaFV~F~~~e~A~~Al 93 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE-----------------TGRSRGFGFVNFNDEGAATAAI 93 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHH
Confidence 34467899999999999999999999999999999976542 3446799999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++....
T Consensus 94 ~~lng~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 94 SEMDGKELNGRHIRVNPANDRP 115 (144)
T ss_pred HHcCCCEECCEEEEEEeCCcCC
Confidence 599999999999999987543
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.6e-14 Score=143.94 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=67.0
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++||||-|+..+|+.+|+++|++||.|++|.|++++. +.+||||||.|.+.+.|..|| .|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~------------------~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD------------------GLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheeccc------------------ccccceeEEEEehHHHHHHHHHhh
Confidence 57899999999999999999999999999999988763 457799999999999999999 68
Q ss_pred cCc-eeee--eeeEEecC
Q 015821 304 NMA-VIGG--NHIRLDRA 318 (399)
Q Consensus 304 ng~-~l~G--r~I~V~~a 318 (399)
||. .+.| .+|.|.|+
T Consensus 186 ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred ccceeeccCCCceEEEec
Confidence 887 4555 56888887
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=1.2e-13 Score=128.27 Aligned_cols=145 Identities=28% Similarity=0.443 Sum_probs=111.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++|||+|||+.+|+++|..+|..||.|..|.+..+. . .+.++|||||.|.+.++|..|+ .+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~--~---------------~~~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR--E---------------TGKSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc--c---------------cCccCceEEEEecCHHHHHHHHHHc
Confidence 6899999999999999999999999999999886654 1 3456799999999999999999 68
Q ss_pred cCceeeeeeeEEecCCC----CccCCC-----------CCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeE
Q 015821 304 NMAVIGGNHIRLDRACP----PRKKLK-----------GEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE 368 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~----~~k~~~-----------~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~ 368 (399)
++..|.|+.|.|.+..+ ...... ............+++.+++..++..++..+|..+ |.+.
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 253 (306)
T COG0724 178 NGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR----GDIV 253 (306)
T ss_pred CCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc----ccce
Confidence 99999999999999642 111110 0011224456789999999999999999999998 7887
Q ss_pred EEEEeecCCCCCCccEEEEEec
Q 015821 369 AVRVIRHPHMRVGKGIAYVLFK 390 (399)
Q Consensus 369 ~VrI~~d~~tg~~kG~AFV~F~ 390 (399)
.+.+...........+.++.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~ 275 (306)
T COG0724 254 RASLPPSKDGKIPKSRSFVGNE 275 (306)
T ss_pred eeeccCCCCCcccccccccchh
Confidence 7766655443334444444433
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.53 E-value=1.1e-13 Score=128.47 Aligned_cols=145 Identities=25% Similarity=0.367 Sum_probs=115.4
Q ss_pred cCEEEEecCCCCCcHHHHHH----HhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 225 LRTIFVGNLPLKVKKKTLIK----EFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~----~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
..||||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|-.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--------------------t~KmRGQA~VvFk~~~~As~A 68 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--------------------TPKMRGQAFVVFKETEAASAA 68 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--------------------CCCccCceEEEecChhHHHHH
Confidence 45999999999999988888 999999999887732 223579999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCCccCCCC---------------------------C----------C----CCccCcccc
Q 015821 301 L-AFNMAVIGGNHIRLDRACPPRKKLKG---------------------------E----------D----APLYDIKKT 338 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~k~~~~---------------------------~----------~----~~~~~~~~t 338 (399)
+ .|+|..|.|++++|++++....-... . . .+...+...
T Consensus 69 ~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~i 148 (221)
T KOG4206|consen 69 LRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNI 148 (221)
T ss_pred HHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceE
Confidence 9 79999999999999999642110000 0 0 112456789
Q ss_pred eeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 339 LfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
||+.|||..++.+.|..+|++| +-...|+++.. ..+.|||+|.+...|..|
T Consensus 149 lf~~niP~es~~e~l~~lf~qf----~g~keir~i~~-----~~~iAfve~~~d~~a~~a 199 (221)
T KOG4206|consen 149 LFLTNIPSESESEMLSDLFEQF----PGFKEIRLIPP-----RSGIAFVEFLSDRQASAA 199 (221)
T ss_pred EEEecCCcchhHHHHHHHHhhC----cccceeEeccC-----CCceeEEecchhhhhHHH
Confidence 9999999999999999999999 55778888665 356999999987665544
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.2e-14 Score=135.81 Aligned_cols=117 Identities=25% Similarity=0.445 Sum_probs=97.5
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
..|||||+||+.++|++-|..+|++.|.|..++|+.+
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------------------- 41 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------------------- 41 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------------
Confidence 3689999999999999999999999999988877221
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG 383 (399)
.|.|.++..+....+ +.....--+||+.|...++-++|++.|.+| |+|..++|++|..|++++|
T Consensus 42 --------e~~v~wa~~p~nQsk----~t~~~hfhvfvgdls~eI~~e~lr~aF~pF----GevS~akvirD~~T~KsKG 105 (321)
T KOG0148|consen 42 --------ELKVNWATAPGNQSK----PTSNQHFHVFVGDLSPEIDNEKLREAFAPF----GEVSDAKVIRDMNTGKSKG 105 (321)
T ss_pred --------hhccccccCcccCCC----CccccceeEEehhcchhcchHHHHHHhccc----cccccceEeecccCCcccc
Confidence 455666654422111 112224578999999999999999999999 9999999999999999999
Q ss_pred EEEEEecCHHHHHhhC
Q 015821 384 IAYVLFKTRDEEWEII 399 (399)
Q Consensus 384 ~AFV~F~s~e~A~~AL 399 (399)
||||.|-..++|+.||
T Consensus 106 YgFVSf~~k~dAEnAI 121 (321)
T KOG0148|consen 106 YGFVSFPNKEDAENAI 121 (321)
T ss_pred eeEEeccchHHHHHHH
Confidence 9999999999999986
No 39
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=7e-13 Score=140.90 Aligned_cols=79 Identities=20% Similarity=0.406 Sum_probs=70.6
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++++++|+.+|+.||.|.+|+|.+++. ++.++|||||+|.+.++|..|| .
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~-----------------tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-----------------GRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC-----------------CCCcCCeEEEEECCHHHHHHHHHH
Confidence 457899999999999999999999999999999977652 2345799999999999999999 7
Q ss_pred ccCceeeeeeeEEecCC
Q 015821 303 FNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (399)
||+..|+|+.|+|.++.
T Consensus 266 mNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCV 282 (612)
T ss_pred hCCCeeCCeEEEEEecC
Confidence 99999999999998763
No 40
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.48 E-value=1.5e-13 Score=104.48 Aligned_cols=69 Identities=35% Similarity=0.591 Sum_probs=61.6
Q ss_pred EEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH-ccCc
Q 015821 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMA 306 (399)
Q Consensus 228 VfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~-lng~ 306 (399)
|||+|||+++|+++|+.+|+.||.|..+.+.... .+.++|||||+|.+.++|..|+. ++|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~------------------~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS------------------SGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET------------------TSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc------------------cccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999886641 23456999999999999999995 9999
Q ss_pred eeeeeeeE
Q 015821 307 VIGGNHIR 314 (399)
Q Consensus 307 ~l~Gr~I~ 314 (399)
.+.|+.|+
T Consensus 63 ~~~~~~ir 70 (70)
T PF00076_consen 63 KINGRKIR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECccCcC
Confidence 99999885
No 41
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=3.3e-13 Score=137.55 Aligned_cols=165 Identities=22% Similarity=0.348 Sum_probs=116.6
Q ss_pred cCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 220 ~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
....-++.||||+||++++++.|...|..||.+. |.++.........+-+| +.||+|+.|.++.+++.
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkG-----------s~~YvflvFe~E~sV~~ 321 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKG-----------SYGYVFLVFEDERSVQS 321 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCC-----------cccEEEEEecchHHHHH
Confidence 3456678999999999999999999999999874 66654222122222221 23699999999999987
Q ss_pred HHH---ccCc--ee-------eeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCe
Q 015821 300 ALA---FNMA--VI-------GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV 367 (399)
Q Consensus 300 Al~---lng~--~l-------~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I 367 (399)
-|. .... .| ..+.|.|-......-.--.+.....++.+|||||+||.-++.++|..+|... ||-|
T Consensus 322 Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~l---yGgV 398 (520)
T KOG0129|consen 322 LLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDL---FGGV 398 (520)
T ss_pred HHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHh---cCce
Confidence 552 2111 11 1111222221110000001123346788999999999999999999999953 4999
Q ss_pred EEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 368 EAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 368 ~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+-|-+|++-+.++|-|-|+|.+..+-.+||
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 99999999888999999999999999888886
No 42
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=4.5e-13 Score=128.25 Aligned_cols=76 Identities=30% Similarity=0.395 Sum_probs=69.3
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
.++|||+|||+.+|+++|++||+.||.|.+|+|+++. .++|||||+|.++++|..||.||
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--------------------~~~GfAFVtF~d~eaAe~AllLn 63 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--------------------ERSQIAYVTFKDPQGAETALLLS 63 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--------------------CCCCEEEEEeCcHHHHHHHHHhc
Confidence 5789999999999999999999999999999996543 12489999999999999999999
Q ss_pred CceeeeeeeEEecCCC
Q 015821 305 MAVIGGNHIRLDRACP 320 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (399)
|..|.|+.|.|.++..
T Consensus 64 G~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 64 GATIVDQSVTITPAED 79 (260)
T ss_pred CCeeCCceEEEEeccC
Confidence 9999999999999864
No 43
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.40 E-value=4.6e-12 Score=117.43 Aligned_cols=156 Identities=22% Similarity=0.337 Sum_probs=111.9
Q ss_pred cCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 220 ~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
+++..-|||||.+||.++..-+|..+|..|-.-+.+.|.... ..+. ..+-+|||.|.+...|..
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Ts--k~~~--------------~~~pvaFatF~s~q~A~a 92 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTS--KGDQ--------------VCKPVAFATFTSHQFALA 92 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeecc--CCCc--------------cccceEEEEecchHHHHH
Confidence 455668999999999999999999999998777777663321 1111 123699999999999999
Q ss_pred HH-HccCceee---eeeeEEecCCCCccCCC--CCC--------------------------------------------
Q 015821 300 AL-AFNMAVIG---GNHIRLDRACPPRKKLK--GED-------------------------------------------- 329 (399)
Q Consensus 300 Al-~lng~~l~---Gr~I~V~~a~~~~k~~~--~~~-------------------------------------------- 329 (399)
|+ .|||..|+ +..|++..+....+..+ +..
T Consensus 93 amnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al 172 (284)
T KOG1457|consen 93 AMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADAL 172 (284)
T ss_pred HHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccC
Confidence 99 79999994 67788888753211110 000
Q ss_pred -------------------------------CCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCC
Q 015821 330 -------------------------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (399)
Q Consensus 330 -------------------------------~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~t 378 (399)
........||||.||..++++++|+.+|+.|.. ...++|..
T Consensus 173 ~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~g----f~~l~~~~---- 244 (284)
T KOG1457|consen 173 KENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPG----FHILKIRA---- 244 (284)
T ss_pred CCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCC----ceEEEEec----
Confidence 000112458999999999999999999999942 33333321
Q ss_pred CCCccEEEEEecCHHHHHhhC
Q 015821 379 RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 379 g~~kG~AFV~F~s~e~A~~AL 399 (399)
......|||.|.+.+.|..||
T Consensus 245 ~~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 245 RGGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCCcceEeecHHHHHHHHHHH
Confidence 334568999999999888774
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=9.7e-13 Score=112.44 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=69.5
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
+.++|||||||++-+|+++|+++|+.||+|..|.|-.+.. ..+-.|||||+|.+.++|..||
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-----------------kktpCGFCFVeyy~~~dA~~Alr 96 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-----------------KKTPCGFCFVEYYSRDDAEDALR 96 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-----------------CcCccceEEEEEecchhHHHHHH
Confidence 3479999999999999999999999999999887744332 2234699999999999999999
Q ss_pred HccCceeeeeeeEEecCC
Q 015821 302 AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~ 319 (399)
-++++.|+.+.|++++..
T Consensus 97 yisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 97 YISGTRLDDRPIRIDWDA 114 (153)
T ss_pred HhccCcccccceeeeccc
Confidence 499999999999999964
No 45
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.36 E-value=3.7e-12 Score=97.81 Aligned_cols=69 Identities=29% Similarity=0.536 Sum_probs=58.0
Q ss_pred EEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH-ccCc
Q 015821 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMA 306 (399)
Q Consensus 228 VfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~-lng~ 306 (399)
|||+|||+++++++|+++|+.||.|..|.+...+ + +..+|+|||+|.+.++|..|+. +++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~--~----------------~~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK--D----------------GQSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST--T----------------SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee--c----------------cccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 7999999999999999999999999999986532 1 2346999999999999999995 6669
Q ss_pred eeeeeeeE
Q 015821 307 VIGGNHIR 314 (399)
Q Consensus 307 ~l~Gr~I~ 314 (399)
.|.|+.|+
T Consensus 63 ~~~g~~l~ 70 (70)
T PF14259_consen 63 EIDGRKLR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECCEEcC
Confidence 99999874
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=8.9e-12 Score=124.65 Aligned_cols=152 Identities=20% Similarity=0.312 Sum_probs=122.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs-~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
.|.|||.|||+++..++|+++|. +.|.|.-|.|..+. .|+.+|||.|+|.+++.+++|+ .
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~------------------~GK~rGcavVEFk~~E~~qKa~E~ 105 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE------------------SGKARGCAVVEFKDPENVQKALEK 105 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc------------------CCCcCCceEEEeeCHHHHHHHHHH
Confidence 57799999999999999999999 68999999986653 3455699999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCCCccCC-----------------------------------------CCCCCC----------
Q 015821 303 FNMAVIGGNHIRLDRACPPRKKL-----------------------------------------KGEDAP---------- 331 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~-----------------------------------------~~~~~~---------- 331 (399)
||.+.+.||+|.|.-.......+ +.++.+
T Consensus 106 lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~ 185 (608)
T KOG4212|consen 106 LNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMS 185 (608)
T ss_pred hhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccc
Confidence 99999999999997653210000 000000
Q ss_pred -------------------------ccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEE
Q 015821 332 -------------------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAY 386 (399)
Q Consensus 332 -------------------------~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AF 386 (399)
..+-..++||.||.+.+....|.+.|.-. |.|..|.+-.|.. |.++|||.
T Consensus 186 ~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA----Gkv~~vdf~idKe-G~s~G~~v 260 (608)
T KOG4212|consen 186 NDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA----GKVQSVDFSIDKE-GNSRGFAV 260 (608)
T ss_pred cccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccc----eeeeeeceeeccc-cccCCeeE
Confidence 01224689999999999999999999876 9999999999976 89999999
Q ss_pred EEecCHHHHHhhC
Q 015821 387 VLFKTRDEEWEII 399 (399)
Q Consensus 387 V~F~s~e~A~~AL 399 (399)
++|..+-.|..||
T Consensus 261 i~y~hpveavqaI 273 (608)
T KOG4212|consen 261 IEYDHPVEAVQAI 273 (608)
T ss_pred EEecchHHHHHHH
Confidence 9999998888775
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.35 E-value=1.6e-11 Score=119.93 Aligned_cols=166 Identities=25% Similarity=0.347 Sum_probs=119.0
Q ss_pred CCCCcCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHH
Q 015821 216 EGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (399)
Q Consensus 216 ~~~~~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e 295 (399)
+++.-++..+..|||+|||.++|.+++..+|++||.|. +++ .++.|+-- .=+-+.|.-+|-|+|.|...+
T Consensus 125 ~~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~-----~d~--~t~epk~K---lYrd~~G~lKGDaLc~y~K~E 194 (382)
T KOG1548|consen 125 EWFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIM-----RDP--QTGEPKVK---LYRDNQGKLKGDALCCYIKRE 194 (382)
T ss_pred cccCcccccCceEEecCCCCcccHHHHHHHHHhcceEe-----ccC--CCCCeeEE---EEecCCCCccCceEEEeeccc
Confidence 34444566667799999999999999999999999653 222 34444310 002245788899999999999
Q ss_pred HHHHHH-HccCceeeeeeeEEecCCCCcc-------CC--------------------CC--CCCCccCcccceeecCC-
Q 015821 296 STEAAL-AFNMAVIGGNHIRLDRACPPRK-------KL--------------------KG--EDAPLYDIKKTVFVGNL- 344 (399)
Q Consensus 296 ~A~~Al-~lng~~l~Gr~I~V~~a~~~~k-------~~--------------------~~--~~~~~~~~~~tLfV~NL- 344 (399)
++..|+ -|++..|.|+.|+|+.|.-..+ .. .. .........++|.|.||
T Consensus 195 SVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~F 274 (382)
T KOG1548|consen 195 SVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMF 274 (382)
T ss_pred HHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecC
Confidence 999999 5999999999999999842100 00 00 01122335678999987
Q ss_pred -C--CCCC-------HHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 345 -P--FDVK-------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 345 -p--~~~t-------eedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
| +..+ .++|.+-++.| |.|..|.|. + .++.|.+-|.|.+.++|..||
T Consensus 275 tp~~~~~~~~l~~dlkedl~eec~K~----G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ci 331 (382)
T KOG1548|consen 275 TPEDFEKNPDLLNDLKEDLTEECEKF----GQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCI 331 (382)
T ss_pred CHHHhccCHHHHHHHHHHHHHHHHHh----CCcceEEEe-c---cCCCceeEEEeCChHHHHHHH
Confidence 1 2233 35666667888 999998764 3 457899999999999999875
No 48
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=2.6e-12 Score=119.96 Aligned_cols=79 Identities=24% Similarity=0.358 Sum_probs=69.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
-++||||||+|.++.+.|+.+|.+||.|++..|+++. ++|+++|||||+|.+.++|..||+--
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~-----------------~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDK-----------------NTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEecc-----------------CCccccceeeEEeecHHHHHHHhcCC
Confidence 4679999999999999999999999999999997765 24567799999999999999999876
Q ss_pred CceeeeeeeEEecCCC
Q 015821 305 MAVIGGNHIRLDRACP 320 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (399)
.-.|+||+..|..+.-
T Consensus 75 ~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 75 NPIIDGRKANCNLASL 90 (247)
T ss_pred CCcccccccccchhhh
Confidence 7789999999888753
No 49
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=7.1e-12 Score=118.47 Aligned_cols=76 Identities=26% Similarity=0.264 Sum_probs=68.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
..+|||+||++.+|+++|++||+.||.|.+|+|+++. ...|||||+|.++++|..||.|+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--------------------et~gfAfVtF~d~~aaetAllLn 64 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--------------------EYACTAYVTFKDAYALETAVLLS 64 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--------------------CcceEEEEEECCHHHHHHHHhcC
Confidence 4789999999999999999999999999999996542 23489999999999999999999
Q ss_pred CceeeeeeeEEecCCC
Q 015821 305 MAVIGGNHIRLDRACP 320 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (399)
|..|.++.|.|..+..
T Consensus 65 Ga~l~d~~I~It~~~~ 80 (243)
T PLN03121 65 GATIVDQRVCITRWGQ 80 (243)
T ss_pred CCeeCCceEEEEeCcc
Confidence 9999999999998753
No 50
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=5.3e-13 Score=120.21 Aligned_cols=83 Identities=23% Similarity=0.363 Sum_probs=74.3
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
=+++.-|||||||+..|+.+|...|++||+|+.|.|+++. .+|+|+||||+.|.+..+...|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk-----------------~TGKSKGFaFLcYEDQRSTILAV 94 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDK-----------------KTGKSKGFAFLCYEDQRSTILAV 94 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecC-----------------CCCcccceEEEEecCccceEEEE
Confidence 3457789999999999999999999999999999998876 25667799999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|||..|.||.|+|+.....
T Consensus 95 DN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 95 DNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred eccCCceecceeEEeeecccc
Confidence 69999999999999998643
No 51
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=4e-12 Score=118.80 Aligned_cols=136 Identities=17% Similarity=0.374 Sum_probs=110.5
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccC
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng 305 (399)
.||||+||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|.-|+ .+|+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhcC
Confidence 49999999999999999999999999988771 289999999999999999 7999
Q ss_pred ceeeeeeeEEecCCCCccCC----CCC-------CCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEee
Q 015821 306 AVIGGNHIRLDRACPPRKKL----KGE-------DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR 374 (399)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~----~~~-------~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~ 374 (399)
..|.|-.+.|.++......+ .++ ........+.|+|.|++..+.+.+|...|+++ |.+....+
T Consensus 58 ~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~----g~~~~~~~-- 131 (216)
T KOG0106|consen 58 KELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA----GEVTYVDA-- 131 (216)
T ss_pred ceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc----CCCchhhh--
Confidence 99999888888886421111 010 01113345788999999999999999999999 88855443
Q ss_pred cCCCCCCccEEEEEecCHHHHHhhC
Q 015821 375 HPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 375 d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+++||+|.+.++|..||
T Consensus 132 ------~~~~~~v~Fs~~~da~ra~ 150 (216)
T KOG0106|consen 132 ------RRNFAFVEFSEQEDAKRAL 150 (216)
T ss_pred ------hccccceeehhhhhhhhcc
Confidence 4568999999999999886
No 52
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6.3e-12 Score=112.70 Aligned_cols=75 Identities=27% Similarity=0.464 Sum_probs=69.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.+.||||||+..+++.+|...|..||+|.+|+|-..| -|||||+|.++.+|..|+ .|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----------------------PGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----------------------PGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----------------------CCceEEeccCcccHHHHHhhc
Confidence 6789999999999999999999999999999996654 289999999999999999 79
Q ss_pred cCceeeeeeeEEecCCCC
Q 015821 304 NMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (399)
+|..|.|..|+|.++...
T Consensus 68 DG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCccccCceEEEEeecCC
Confidence 999999999999998654
No 53
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.26 E-value=1.3e-11 Score=109.48 Aligned_cols=63 Identities=19% Similarity=0.369 Sum_probs=59.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|.+| |.|..|.|+.|..++.++|||||+|.+.++|+.||
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al 93 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHF----GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999999999999999999999999999999986
No 54
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=2e-11 Score=128.39 Aligned_cols=151 Identities=23% Similarity=0.333 Sum_probs=115.0
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCce-eEEEeeCCHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV-HAYIVFKSEQSTEA 299 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG-~AFV~F~s~e~A~~ 299 (399)
..+..+.++|+|||..+..++|..+|..||.|..|.|+ | . | .|+|+|.++.+|..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~---~-------------------G~~aiv~fl~p~eAr~ 436 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P---G-------------------GTGAIVEFLNPLEARK 436 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c---c-------------------cceeeeeecCccchHH
Confidence 45667889999999999999999999999999988552 2 1 3 49999999999999
Q ss_pred HH-HccCceeeeeeeEEecCCCCccC-------C----------------CCCC-------C-----C------ccCccc
Q 015821 300 AL-AFNMAVIGGNHIRLDRACPPRKK-------L----------------KGED-------A-----P------LYDIKK 337 (399)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a~~~~k~-------~----------------~~~~-------~-----~------~~~~~~ 337 (399)
|+ .|..+.+...++.+.|+...... . ...+ . + .....+
T Consensus 437 Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t 516 (725)
T KOG0110|consen 437 AFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETET 516 (725)
T ss_pred HHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccch
Confidence 99 58888887777777665210000 0 0000 0 0 011123
Q ss_pred ceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCC---CCCccEEEEEecCHHHHHhhC
Q 015821 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM---RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 338 tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~t---g~~kG~AFV~F~s~e~A~~AL 399 (399)
+|||.||++.+|.++|..+|..+ |.|.+|.|...++. -.+.|||||+|.+.++|++||
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~----G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~ 577 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQ----GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAAL 577 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhc----CeEEEEEEeccccccccccccceeEEEecCHHHHHHHH
Confidence 49999999999999999999998 99999998876541 135599999999999999885
No 55
>smart00362 RRM_2 RNA recognition motif.
Probab=99.22 E-value=5.7e-11 Score=88.87 Aligned_cols=71 Identities=39% Similarity=0.655 Sum_probs=62.0
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccC
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng 305 (399)
+|||+|||..++.++|+.+|..||.|..+.+...+ + .++|+|||+|.+.++|+.|+ .+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~----~---------------~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT----G---------------KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----C---------------CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 49999999999999999999999999998885432 1 24589999999999999999 5899
Q ss_pred ceeeeeeeEEe
Q 015821 306 AVIGGNHIRLD 316 (399)
Q Consensus 306 ~~l~Gr~I~V~ 316 (399)
..+.|+.|.|.
T Consensus 62 ~~~~~~~i~v~ 72 (72)
T smart00362 62 TKLGGRPLRVE 72 (72)
T ss_pred cEECCEEEeeC
Confidence 99999998863
No 56
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.22 E-value=4.8e-11 Score=120.06 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=69.3
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++|||+|||+.+|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|+.|| .|
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~-----------------tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL-----------------TGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC-----------------CCccceEEEEEECCHHHHHHHHHHh
Confidence 56899999999999999999999999999999966531 3445699999999999999999 69
Q ss_pred cCceeee--eeeEEecCCCC
Q 015821 304 NMAVIGG--NHIRLDRACPP 321 (399)
Q Consensus 304 ng~~l~G--r~I~V~~a~~~ 321 (399)
|+..|.| +.|.|.++...
T Consensus 256 ng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CCCccCCCceeEEEEECCcc
Confidence 9998866 68999888653
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.21 E-value=5.9e-11 Score=121.91 Aligned_cols=75 Identities=23% Similarity=0.436 Sum_probs=67.3
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccC
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng 305 (399)
.||||||.+.+|++.|+.+|..||.|..|.++.+. .+|.++|||||+|.+.++|..|+ .|||
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~-----------------~tG~skgfGfi~f~~~~~ar~a~e~lng 342 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS-----------------ETGRSKGFGFITFVNKEDARKALEQLNG 342 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeecccc-----------------ccccccCcceEEEecHHHHHHHHHHhcc
Confidence 39999999999999999999999999999986543 14567799999999999999998 7999
Q ss_pred ceeeeeeeEEecC
Q 015821 306 AVIGGNHIRLDRA 318 (399)
Q Consensus 306 ~~l~Gr~I~V~~a 318 (399)
..|-|+.|+|...
T Consensus 343 felAGr~ikV~~v 355 (549)
T KOG0147|consen 343 FELAGRLIKVSVV 355 (549)
T ss_pred ceecCceEEEEEe
Confidence 9999999999775
No 58
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=5.6e-11 Score=98.32 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=69.6
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
.-.+.|||+|||+++|.+++.++|.+||.|..|+|-.. ...+|.|||.|++..+|.+|+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--------------------k~TrGTAFVVYedi~dAk~A~d 75 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--------------------KETRGTAFVVYEDIFDAKKACD 75 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--------------------cCcCceEEEEehHhhhHHHHHH
Confidence 34688999999999999999999999999999998222 124699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|+|..+.++.+.|.+..+.
T Consensus 76 hlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 76 HLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred HhcccccCCceEEEEecCHH
Confidence 79999999999999998754
No 59
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=4.3e-11 Score=115.06 Aligned_cols=79 Identities=25% Similarity=0.389 Sum_probs=71.4
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
.-+||||+-|++++++..|+..|+.||+|..|+|+.+.. +|+++|||||+|.+..++..|. .
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~v-----------------TgkskGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKV-----------------TGKSKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecc-----------------cCCccceEEEEeccHHHHHHHHHh
Confidence 368999999999999999999999999999999977653 4556799999999999999999 6
Q ss_pred ccCceeeeeeeEEecCC
Q 015821 303 FNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (399)
.+|..|+|+.|.|+.-.
T Consensus 163 adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 163 ADGIKIDGRRILVDVER 179 (335)
T ss_pred ccCceecCcEEEEEecc
Confidence 99999999999998864
No 60
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=4.4e-11 Score=121.21 Aligned_cols=75 Identities=28% Similarity=0.412 Sum_probs=67.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCH--HHHHHHH-
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE--QSTEAAL- 301 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~--e~A~~Al- 301 (399)
..+||||||++.+|+++|..+|+.||.|.+|.|++ .++ ||||||+|.+. .++.+||
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR----ETG-----------------RGFAFVEMssdddaEeeKAIS 68 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR----TKG-----------------RSFAYIDFSPSSTNSLTKLFS 68 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec----ccC-----------------CceEEEEecCCcHHHHHHHHH
Confidence 47799999999999999999999999999999963 222 49999999987 6789999
Q ss_pred HccCceeeeeeeEEecCCC
Q 015821 302 AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~ 320 (399)
.|||..|.|+.|+|..+.+
T Consensus 69 aLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 69 TYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred HhcCCeecCceeEEeeccH
Confidence 6999999999999999975
No 61
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=4.6e-11 Score=111.64 Aligned_cols=60 Identities=20% Similarity=0.382 Sum_probs=57.7
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
-++||||||+|.+..+.|+++|++| |+|+...|+.|..+|+++|||||+|.+.++|.+|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqf----GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc 71 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQF----GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRAC 71 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHh----CceEEEEEEeccCCccccceeeEEeecHHHHHHHh
Confidence 4789999999999999999999999 99999999999999999999999999999999884
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.16 E-value=6.5e-11 Score=89.86 Aligned_cols=56 Identities=32% Similarity=0.668 Sum_probs=53.1
Q ss_pred eeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 339 LfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|||+|||.++++++|+++|++| |.|..+.+..+ .++..+|||||+|.+.++|..||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~----g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~ 56 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF----GKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKAL 56 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT----STEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHh----hhccccccccc-ccccccceEEEEEcCHHHHHHHH
Confidence 7999999999999999999999 99999999998 56999999999999999999885
No 63
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=1.8e-10 Score=85.66 Aligned_cols=70 Identities=36% Similarity=0.544 Sum_probs=60.4
Q ss_pred EecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccCcee
Q 015821 230 VGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVI 308 (399)
Q Consensus 230 VgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng~~l 308 (399)
|+|||..+++++|+.+|..||.|..+.+...+. ++.++|||||+|.+.++|..|+ .+++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~-----------------~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD-----------------TGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC-----------------CCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 689999999999999999999999998855431 2345699999999999999999 6899999
Q ss_pred eeeeeEEe
Q 015821 309 GGNHIRLD 316 (399)
Q Consensus 309 ~Gr~I~V~ 316 (399)
.|+.|.|.
T Consensus 64 ~~~~~~v~ 71 (71)
T smart00360 64 DGRPLKVK 71 (71)
T ss_pred CCcEEEeC
Confidence 99998873
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.9e-10 Score=108.00 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=74.0
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
..+..+|-|.|||.++++.+|.++|..||.|..|.|.++. . +|.++|||||.|.+.++|.+||
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK--~---------------TG~~kGFAFVtF~sRddA~rAI 248 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK--E---------------TGLSKGFAFVTFESRDDAARAI 248 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEcc--c---------------cCcccceEEEEEecHHHHHHHH
Confidence 3467889999999999999999999999999999997755 3 4556699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|||.-++.--|+|.|+.|.
T Consensus 249 ~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 249 ADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred HHccCcccceEEEEEEecCCC
Confidence 69999999999999999763
No 65
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=3.9e-10 Score=84.74 Aligned_cols=73 Identities=38% Similarity=0.601 Sum_probs=63.5
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccC
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng 305 (399)
+|||+|||+.+++++|+.+|..||.|..+.+...+.. ..+|+|||+|.+.++|..|+ .+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 4899999999999999999999999999988654421 23589999999999999999 6899
Q ss_pred ceeeeeeeEEec
Q 015821 306 AVIGGNHIRLDR 317 (399)
Q Consensus 306 ~~l~Gr~I~V~~ 317 (399)
..+.|+.|.|.+
T Consensus 63 ~~~~~~~~~v~~ 74 (74)
T cd00590 63 KELGGRPLRVEF 74 (74)
T ss_pred CeECCeEEEEeC
Confidence 999999998863
No 66
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.12 E-value=1e-09 Score=109.32 Aligned_cols=145 Identities=19% Similarity=0.288 Sum_probs=115.0
Q ss_pred cCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 225 LRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 225 ~rtVfVgNLP~-~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
...|.|.||.. .+|.+.|..+|+-||.|..|.|.... +-.|+|+|.+...|+.|+ .
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~h 354 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEH 354 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHH
Confidence 67899999965 58999999999999999999996532 136999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCCCccCCCC----C------C----------------CCccCcccceeecCCCCCCCHHHHHHH
Q 015821 303 FNMAVIGGNHIRLDRACPPRKKLKG----E------D----------------APLYDIKKTVFVGNLPFDVKDEEIYQL 356 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~----~------~----------------~~~~~~~~tLfV~NLp~~~teedL~~~ 356 (399)
|+|..|.|+.|+|.++....-.... + . ....+++.+|++.|+|.++++++|+.+
T Consensus 355 L~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~ 434 (492)
T KOG1190|consen 355 LEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNL 434 (492)
T ss_pred hhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHh
Confidence 9999999999999998653211100 0 0 012457789999999999999999999
Q ss_pred hhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 357 FCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 357 Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|...+ |.|....+. ++.+.+|++++.+.++|..||
T Consensus 435 f~~~g---~~vkafkff-----~kd~kmal~q~~sveeA~~al 469 (492)
T KOG1190|consen 435 FQEPG---GQVKAFKFF-----QKDRKMALPQLESVEEAIQAL 469 (492)
T ss_pred hhcCC---ceEEeeeec-----CCCcceeecccCChhHhhhhc
Confidence 99873 455555443 344669999999999998875
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.09 E-value=1.9e-10 Score=88.25 Aligned_cols=56 Identities=27% Similarity=0.593 Sum_probs=51.5
Q ss_pred eeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 339 LfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|||+|||+.+++++|+++|+.| |.|..|++..+.. |.++|+|||+|.+.++|.+||
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~----g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al 56 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF----GPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRAL 56 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS----SBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhc----CCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHH
Confidence 7999999999999999999999 8999999999977 999999999999999999885
No 68
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=2e-10 Score=113.58 Aligned_cols=152 Identities=18% Similarity=0.276 Sum_probs=112.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhccc----CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~----G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.-.|.+++||+++|+.++..||..- |..+.|-+++.+ +|+-.|-|||.|..+++|+.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp------------------dgrpTGdAFvlfa~ee~aq~a 222 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP------------------DGRPTGDAFVLFACEEDAQFA 222 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC------------------CCCcccceEEEecCHHHHHHH
Confidence 4568899999999999999999842 234556554433 234459999999999999999
Q ss_pred HHccCceeeeeeeEEecCCCC----------ccCCCC---------CC---CCccCcccceeecCCCCCCCHHHHHHHhh
Q 015821 301 LAFNMAVIGGNHIRLDRACPP----------RKKLKG---------ED---APLYDIKKTVFVGNLPFDVKDEEIYQLFC 358 (399)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~----------~k~~~~---------~~---~~~~~~~~tLfV~NLp~~~teedL~~~Fs 358 (399)
|..|...|+-|.|.+-++... ...... .. .+......+|.+++||+..+.++|..||.
T Consensus 223 L~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg 302 (508)
T KOG1365|consen 223 LRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG 302 (508)
T ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH
Confidence 988888887788777665210 000000 00 11123467899999999999999999999
Q ss_pred ccCCCCCCeEE--EEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 359 GLNDLESSVEA--VRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 359 ~f~~~~G~I~~--VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
.|. -.|.. |.++.+. .|++.|-|||+|.+.+.|.+|
T Consensus 303 dFa---~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aa 340 (508)
T KOG1365|consen 303 DFA---TDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAA 340 (508)
T ss_pred HHh---hhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHH
Confidence 884 24554 7888885 499999999999999998876
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=2.2e-10 Score=111.40 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=69.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.+.|+|+|||+..-+-||+.+|.+||.|.+|.|+.. ..-|+|||||+|.+.++|++|- +|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-------------------ERGSKGFGFVTmen~~dadRARa~L 156 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-------------------ERGSKGFGFVTMENPADADRARAEL 156 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEec-------------------cCCCCccceEEecChhhHHHHHHHh
Confidence 467999999999999999999999999999998542 2236799999999999999998 79
Q ss_pred cCceeeeeeeEEecCCCC
Q 015821 304 NMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (399)
||+.+.||+|.|..+...
T Consensus 157 Hgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 157 HGTVVEGRKIEVNNATAR 174 (376)
T ss_pred hcceeeceEEEEeccchh
Confidence 999999999999998754
No 70
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.06 E-value=2e-10 Score=105.63 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=71.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
-.+|.|-||-+-+|.++|+.+|.+||.|..|.|++++. ++.++|||||-|....+|+.|| .|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~-----------------Tr~sRgFaFVrf~~k~daedA~dam 75 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRY-----------------TRQSRGFAFVRFHDKRDAEDALDAM 75 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccc-----------------cccccceeEEEeeecchHHHHHHhh
Confidence 46799999999999999999999999999999988774 3455699999999999999999 79
Q ss_pred cCceeeeeeeEEecCC
Q 015821 304 NMAVIGGNHIRLDRAC 319 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (399)
+|.+|+|+.|.|+++.
T Consensus 76 DG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 76 DGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeeccceeeehhhh
Confidence 9999999999999984
No 71
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.05 E-value=1.5e-09 Score=110.57 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=112.4
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeE-EEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~-I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
....|-+++||+.+|+++|.+||+..-.|.. |.++.++ .++..|-|||+|.+.+.|+.||.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~------------------rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ------------------RGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC------------------CCCcccceEEEecCHHHHHHHHH
Confidence 3578999999999999999999998665544 4343322 23356999999999999999998
Q ss_pred ccCceeeeeeeEEecCCCC------------------ccC---CCC----------------------------------
Q 015821 303 FNMAVIGGNHIRLDRACPP------------------RKK---LKG---------------------------------- 327 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~------------------~k~---~~~---------------------------------- 327 (399)
.|...|.-|.|.|-.+... -.. .++
T Consensus 164 rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~ 243 (510)
T KOG4211|consen 164 RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQ 243 (510)
T ss_pred HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccc
Confidence 8888888888888765210 000 000
Q ss_pred C----------C----C----C-----------ccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCC
Q 015821 328 E----------D----A----P-----------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (399)
Q Consensus 328 ~----------~----~----~-----------~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~t 378 (399)
+ . . + .......+++++||+..+..++.++|+.. ....|.|-..++
T Consensus 244 d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-----~p~~v~i~ig~d- 317 (510)
T KOG4211|consen 244 DYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-----NPYRVHIEIGPD- 317 (510)
T ss_pred ccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-----CceeEEEEeCCC-
Confidence 0 0 0 0 00112568889999999999999999986 455777777654
Q ss_pred CCCccEEEEEecCHHHHHhhC
Q 015821 379 RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 379 g~~kG~AFV~F~s~e~A~~AL 399 (399)
|+..|-|+|+|.|+++|..||
T Consensus 318 Gr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 318 GRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CccCCcceeecccchhhHhhh
Confidence 999999999999999999886
No 72
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.3e-10 Score=107.57 Aligned_cols=82 Identities=28% Similarity=0.465 Sum_probs=74.0
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..|+||||+|.-.+|+.-|...|-.||.|..|.++.+. -+.++||||||+|.-.++|.+|| .
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDy-----------------esqkHRgFgFVefe~aEDAaaAiDN 71 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDY-----------------ESQKHRGFGFVEFEEAEDAAAAIDN 71 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccch-----------------hcccccceeEEEeeccchhHHHhhc
Confidence 46899999999999999999999999999999986654 24567899999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCCCc
Q 015821 303 FNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (399)
+|+..|.||.|+|.++.|..
T Consensus 72 MnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 72 MNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred CchhhhcceeEEEeecCCcc
Confidence 99999999999999998753
No 73
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.9e-10 Score=105.97 Aligned_cols=63 Identities=30% Similarity=0.481 Sum_probs=60.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+..++|.|.||+.++++++|+++|..| |.|..|.|.+|..||.++|||||+|.++++|.+||
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~f----g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI 248 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPF----GPITRVYLARDKETGLSKGFAFVTFESRDDAARAI 248 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhcc----CccceeEEEEccccCcccceEEEEEecHHHHHHHH
Confidence 4467899999999999999999999999 99999999999999999999999999999999986
No 74
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=3.9e-10 Score=97.41 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=70.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.-.|||.++...+|+++|.+.|..||+|.+|.|-.+. .+|-.+|||+|+|.+...|++|+ .+
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR-----------------RtGy~KGYaLvEYet~keAq~A~~~~ 134 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR-----------------RTGYVKGYALVEYETLKEAQAAIDAL 134 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeecccc-----------------ccccccceeeeehHhHHHHHHHHHhc
Confidence 3569999999999999999999999999999883332 25667899999999999999999 79
Q ss_pred cCceeeeeeeEEecCCC
Q 015821 304 NMAVIGGNHIRLDRACP 320 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~ 320 (399)
||..|.|+.|.|.|+..
T Consensus 135 Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 135 NGAELLGQNVSVDWCFV 151 (170)
T ss_pred cchhhhCCceeEEEEEe
Confidence 99999999999999864
No 75
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.94 E-value=1.5e-09 Score=111.68 Aligned_cols=78 Identities=26% Similarity=0.421 Sum_probs=71.2
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hcc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ln 304 (399)
+.|||||||+++++++|..+|+..|.|.++++..++ .++. .+|||||+|.+.+.+..|+ .||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~--~tG~---------------~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDR--ETGK---------------PKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccc--cCCC---------------cCceeeEecCchhhHHHHHHhcC
Confidence 889999999999999999999999999999997766 3444 4599999999999999999 699
Q ss_pred CceeeeeeeEEecCCC
Q 015821 305 MAVIGGNHIRLDRACP 320 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (399)
|..+.||.|+|.++..
T Consensus 82 g~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASN 97 (435)
T ss_pred CcccCCceEEeecccc
Confidence 9999999999999853
No 76
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.92 E-value=2e-09 Score=103.32 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=52.9
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.++|||+|||+.+++++|+++|+.| |.|..|+|+++.. .+|||||+|.+.++|..||
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~----G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al 60 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS----GDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL 60 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH
Confidence 4799999999999999999999999 9999999999853 5799999999999999886
No 77
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.87 E-value=1.3e-09 Score=106.83 Aligned_cols=155 Identities=20% Similarity=0.194 Sum_probs=118.2
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
...++|++++.+.+.+.++..+|..+|.+....+... .+...++|++++.|...+.+..||.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~-----------------~~~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSL-----------------EDSLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhh-----------------ccccccccceeeccccHHHHHHHHHh
Confidence 4788999999999999989999999997766554221 12345679999999999999999987
Q ss_pred cCc-eeeeeeeEEecCCCCccCC-CCCCCCccCccccee-ecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCC
Q 015821 304 NMA-VIGGNHIRLDRACPPRKKL-KGEDAPLYDIKKTVF-VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (399)
Q Consensus 304 ng~-~l~Gr~I~V~~a~~~~k~~-~~~~~~~~~~~~tLf-V~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~ 380 (399)
.+. .+.++.+............ ............++| |+||+++++.++|+.+|..+ |.|..++++.++.+|.
T Consensus 150 s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~----~~i~~~r~~~~~~s~~ 225 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSS----GEITSVRLPTDEESGD 225 (285)
T ss_pred hhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCc----CcceeeccCCCCCccc
Confidence 775 5555555555543322100 011111223345555 99999999999999999998 9999999999999999
Q ss_pred CccEEEEEecCHHHHHhhC
Q 015821 381 GKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 381 ~kG~AFV~F~s~e~A~~AL 399 (399)
++|||||.|.....+..+|
T Consensus 226 ~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 226 SKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred hhhhhhhhhhhchhHHHHh
Confidence 9999999999988877664
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=98.86 E-value=6.7e-09 Score=77.47 Aligned_cols=56 Identities=36% Similarity=0.685 Sum_probs=52.1
Q ss_pred ceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 338 tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+|||+|||..++.++|+++|..| |.|..+.+..+. +.++|+|||+|.+.++|..|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~----g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~ 56 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF----GPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAI 56 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc----CCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHH
Confidence 58999999999999999999999 999999999886 788999999999999998875
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.86 E-value=4.9e-09 Score=99.35 Aligned_cols=58 Identities=26% Similarity=0.290 Sum_probs=53.2
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+||++.+|+++|++||+.| |.|..|+|++| +...|||||+|.++++|..||
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~----G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl 61 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHC----GAIEHVEIIRS---GEYACTAYVTFKDAYALETAV 61 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhc----CCeEEEEEecC---CCcceEEEEEECCHHHHHHHH
Confidence 35899999999999999999999999 99999999998 455689999999999999885
No 80
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.84 E-value=2.4e-08 Score=99.10 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=113.9
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
+...|..++|||..++.+|..||.........+.+.. ... |+..|.|.|.|.+.+.-..|++.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG----~~q-------------grRnge~lvrf~d~e~RdlalkR 121 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCL----NAQ-------------GRRNGEALVRFVDPEGRDLALKR 121 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeee----hhh-------------hccccceEEEecCchhhhhhhHh
Confidence 3556888999999999999999986432211111111 111 22349999999999999999999
Q ss_pred cCceeeeeeeEEecCCCCccCCC-----CCCCC--ccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecC
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLK-----GEDAP--LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~-----~~~~~--~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~ 376 (399)
+.+.+.++.|.|..+....--.. ....+ .....-.|.+++||++++..++..||.+.-.+.|-.+.|-+++.+
T Consensus 122 hkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp 201 (508)
T KOG1365|consen 122 HKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP 201 (508)
T ss_pred hhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC
Confidence 89999999999988864321110 01111 112345677889999999999999996422223567788888876
Q ss_pred CCCCCccEEEEEecCHHHHHhhC
Q 015821 377 HMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 377 ~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+ |+..|-|||.|...++|+.||
T Consensus 202 d-grpTGdAFvlfa~ee~aq~aL 223 (508)
T KOG1365|consen 202 D-GRPTGDAFVLFACEEDAQFAL 223 (508)
T ss_pred C-CCcccceEEEecCHHHHHHHH
Confidence 6 999999999999999999886
No 81
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=3.7e-09 Score=90.67 Aligned_cols=61 Identities=26% Similarity=0.467 Sum_probs=57.7
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.++||||+||.+.+++++|.++|+.+ |.|..|.+-.|..+..+.|||||+|-+.++|..||
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~c----G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Al 95 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKC----GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDAL 95 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhc----cchheeEeccccCCcCccceEEEEEecchhHHHHH
Confidence 46899999999999999999999999 99999999889988999999999999999999885
No 82
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=3.9e-10 Score=120.70 Aligned_cols=131 Identities=28% Similarity=0.334 Sum_probs=111.4
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
+-++..++||+||++.+.+.+|...|..+|.+..+++. + ..+.+ .-+|+||++|..++++.+|
T Consensus 663 ~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~-~-h~n~~---------------~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 663 EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV-I-HKNEK---------------RFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHH-H-Hhhcc---------------ccccceeeEeecCCchhhh
Confidence 34567889999999999999999999999988877764 1 22333 3459999999999999999
Q ss_pred HHccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCC
Q 015821 301 LAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (399)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~ 380 (399)
+.++...+.| ...|+|+|+|+..|.+.|+.+|..+ |.+..++++.... |.
T Consensus 726 V~f~d~~~~g-------------------------K~~v~i~g~pf~gt~e~~k~l~~~~----gn~~~~~~vt~r~-gk 775 (881)
T KOG0128|consen 726 VAFRDSCFFG-------------------------KISVAISGPPFQGTKEELKSLASKT----GNVTSLRLVTVRA-GK 775 (881)
T ss_pred hhhhhhhhhh-------------------------hhhhheeCCCCCCchHHHHhhcccc----CCccccchhhhhc-cc
Confidence 9877666666 1578999999999999999999999 8999999888865 99
Q ss_pred CccEEEEEecCHHHHHhh
Q 015821 381 GKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 381 ~kG~AFV~F~s~e~A~~A 398 (399)
++|.|||.|.+..++.++
T Consensus 776 pkg~a~v~y~~ea~~s~~ 793 (881)
T KOG0128|consen 776 PKGKARVDYNTEADASRK 793 (881)
T ss_pred cccceeccCCCcchhhhh
Confidence 999999999998888765
No 83
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=1.3e-08 Score=75.19 Aligned_cols=55 Identities=27% Similarity=0.451 Sum_probs=47.1
Q ss_pred HHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccCceeeeeeeEEecC
Q 015821 242 LIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRA 318 (399)
Q Consensus 242 L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~a 318 (399)
|+.+|++||.|..|.+.... +|+|||+|.+.++|..|+ .|||..|.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----------------------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----------------------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----------------------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999883211 379999999999999999 69999999999999875
No 84
>smart00360 RRM RNA recognition motif.
Probab=98.80 E-value=1.3e-08 Score=75.53 Aligned_cols=55 Identities=36% Similarity=0.673 Sum_probs=51.6
Q ss_pred ecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 341 VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 341 V~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|+|||..+++++|+.+|++| |.|..+.+..++.++.++|||||+|.+.++|..|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~----g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~ 55 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF----GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKAL 55 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh----CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHH
Confidence 68999999999999999999 99999999998878999999999999999998875
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1e-08 Score=98.91 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=58.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
.++-+||||+-|++++++..|+..|+.| |.|..|+|++|..||.++|||||+|.+.-+...|
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~Y----G~IkrirlV~d~vTgkskGYAFIeye~erdm~~A 159 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKY----GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAA 159 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhc----CcceeEEEeeecccCCccceEEEEeccHHHHHHH
Confidence 4678999999999999999999999999 9999999999999999999999999998877766
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.77 E-value=1.3e-08 Score=94.37 Aligned_cols=60 Identities=35% Similarity=0.686 Sum_probs=57.5
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.++|||+|||+.+++++|.++|..| |.|..|.|..+..+|.++|||||.|.+.++|..||
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~----g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~ 174 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF----GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAI 174 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc----CceeEEEeeeccccCccCceEEEEecCHHHHHHHH
Confidence 5999999999999999999999999 99999999999888999999999999999999885
No 87
>smart00361 RRM_1 RNA recognition motif.
Probab=98.76 E-value=3e-08 Score=76.84 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=49.8
Q ss_pred HHHHHHHhc----ccCCeeEEE-EeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccCceeeeee
Q 015821 239 KKTLIKEFI----KFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNH 312 (399)
Q Consensus 239 ee~L~~~Fs----~~G~I~~I~-i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~ 312 (399)
+++|+++|+ .||.|.+|. +..++.+. .+.++|||||.|.+.++|..|+ .|||..+.|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~---------------~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY---------------ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC---------------CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578889998 999999985 53333211 1345699999999999999999 69999999999
Q ss_pred eEE
Q 015821 313 IRL 315 (399)
Q Consensus 313 I~V 315 (399)
|.+
T Consensus 67 l~~ 69 (70)
T smart00361 67 VKA 69 (70)
T ss_pred EEe
Confidence 976
No 88
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=2.4e-09 Score=96.78 Aligned_cols=60 Identities=18% Similarity=0.519 Sum_probs=54.5
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHH
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEW 396 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~ 396 (399)
+-.+.-|||||||+.+|+-||.-.|++| |.|..|.|++|..||.++||||+.|.+--+..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqy----Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTI 91 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQY----GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTI 91 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeecc----CceEEEEEEecCCCCcccceEEEEecCccceE
Confidence 4456789999999999999999999999 99999999999999999999999998865443
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=3.6e-08 Score=102.38 Aligned_cols=155 Identities=19% Similarity=0.288 Sum_probs=113.3
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..+.+||++||...++.++.++...||++....+..+. .+|-++||||.+|.++.-...|+ .
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~-----------------~~g~skg~af~ey~dpsvtd~A~ag 350 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS-----------------ATGNSKGFAFCEYCDPSVTDQAIAG 350 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc-----------------ccccccceeeeeeeCCcchhhhhcc
Confidence 35679999999999999999999999999988885543 23456799999999999999999 5
Q ss_pred ccCceeeeeeeEEecCCCCccCCCCCC---------------CCccCcccceeecCC--CCCC-CH-------HHHHHHh
Q 015821 303 FNMAVIGGNHIRLDRACPPRKKLKGED---------------APLYDIKKTVFVGNL--PFDV-KD-------EEIYQLF 357 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~---------------~~~~~~~~tLfV~NL--p~~~-te-------edL~~~F 357 (399)
|||..+.+..|.|+.+........... .....+...|.+.|+ |.++ .+ ++|+.-+
T Consensus 351 LnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec 430 (500)
T KOG0120|consen 351 LNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC 430 (500)
T ss_pred cchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh
Confidence 999999999999999875433221111 111223455555554 1111 12 2344445
Q ss_pred hccCCCCCCeEEEEEeec-C--CCCCCccEEEEEecCHHHHHhhC
Q 015821 358 CGLNDLESSVEAVRVIRH-P--HMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 358 s~f~~~~G~I~~VrI~~d-~--~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+.| |.|..|.|+++ . +..-+.|-.||+|.+.+++++|+
T Consensus 431 ~k~----g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~ 471 (500)
T KOG0120|consen 431 AKF----GAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAM 471 (500)
T ss_pred ccc----CceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHH
Confidence 666 89999999988 2 33456778899999999999884
No 90
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=2.6e-09 Score=99.03 Aligned_cols=124 Identities=23% Similarity=0.317 Sum_probs=101.7
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH-c
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~-l 303 (399)
.+||||+||...++++-|.++|-+.|+|..|.|+.+.. +.-+ ||||.|.++-++.-|+. +
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d------------------~~~k-Fa~v~f~~E~sv~~a~~L~ 69 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD------------------QEQK-FAYVFFPNENSVQLAGQLE 69 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc------------------CCCc-eeeeecccccchhhhhhhc
Confidence 58899999999999999999999999999998855431 1122 99999999999999995 8
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG 383 (399)
||..+.++.|.|.+-+.... .- |...++.+.+...|+.- |.|..+++.++.+ |+++.
T Consensus 70 ng~~l~~~e~q~~~r~G~sh-------------ap-----ld~r~~~ei~~~v~s~a----~p~~~~R~~~~~d-~rnrn 126 (267)
T KOG4454|consen 70 NGDDLEEDEEQRTLRCGNSH-------------AP-----LDERVTEEILYEVFSQA----GPIEGVRIPTDND-GRNRN 126 (267)
T ss_pred ccchhccchhhcccccCCCc-------------ch-----hhhhcchhhheeeeccc----CCCCCcccccccc-CCccC
Confidence 99999999888776542110 01 44567888899999987 8899999999976 89999
Q ss_pred EEEEEec
Q 015821 384 IAYVLFK 390 (399)
Q Consensus 384 ~AFV~F~ 390 (399)
++|+++-
T Consensus 127 ~~~~~~q 133 (267)
T KOG4454|consen 127 FGFVTYQ 133 (267)
T ss_pred ccchhhh
Confidence 9999874
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=2.3e-08 Score=103.76 Aligned_cols=152 Identities=20% Similarity=0.385 Sum_probs=118.1
Q ss_pred cCCCCcCEEEEecCCCCCcHHHHHHHhccc-----------C-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeE
Q 015821 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKF-----------G-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287 (399)
Q Consensus 220 ~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~-----------G-~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~A 287 (399)
....+.+.+||+++|+.++++.+..+|..- | .+..+.+ +..+.||
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-----------------------n~~~nfa 226 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-----------------------NLEKNFA 226 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-----------------------cccccce
Confidence 345567889999999999999999999863 1 1344433 1234799
Q ss_pred EEeeCCHHHHHHHHHccCceeeeeeeEEecCCCCccCCCC--------------CCCCccCcccceeecCCCCCCCHHHH
Q 015821 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKG--------------EDAPLYDIKKTVFVGNLPFDVKDEEI 353 (399)
Q Consensus 288 FV~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~--------------~~~~~~~~~~tLfV~NLp~~~teedL 353 (399)
||+|.+.+.|..|+.+++..+.|+.+.+-........... ...........|||+|||..+++.++
T Consensus 227 ~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~ 306 (500)
T KOG0120|consen 227 FIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQV 306 (500)
T ss_pred eEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHH
Confidence 9999999999999999999999998877665322111100 00112345678999999999999999
Q ss_pred HHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 354 YQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 354 ~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
.++...| |.+...+++.+..+|.++||||.+|-++.....|
T Consensus 307 ~Ell~~f----g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A 347 (500)
T KOG0120|consen 307 KELLDSF----GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQA 347 (500)
T ss_pred HHHHHhc----ccchhheeecccccccccceeeeeeeCCcchhhh
Confidence 9999999 8899999999999999999999999987665554
No 92
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=2.5e-08 Score=97.33 Aligned_cols=60 Identities=25% Similarity=0.433 Sum_probs=55.0
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
.+..++|+|.||||..-+.||+.+|.+| |.|.+|.|+.+. ..++|||||+|.+.++|++|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kf----G~VldVEIIfNE--RGSKGFGFVTmen~~dadRA 152 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKF----GKVLDVEIIFNE--RGSKGFGFVTMENPADADRA 152 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhh----CceeeEEEEecc--CCCCccceEEecChhhHHHH
Confidence 4456899999999999999999999999 999999999874 56999999999999999987
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.68 E-value=6.2e-08 Score=72.57 Aligned_cols=57 Identities=39% Similarity=0.719 Sum_probs=52.4
Q ss_pred ceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 338 tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+|+|+|||..+++++|.++|+.| |.|..+.+..+.. +.++|+|||+|.+.++|..|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~----g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~ 57 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF----GKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKAL 57 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc----CCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHH
Confidence 58999999999999999999999 8999999998875 478999999999999998875
No 94
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=5.3e-08 Score=95.66 Aligned_cols=77 Identities=27% Similarity=0.542 Sum_probs=67.7
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
+....+|||++|-..+++.+|+++|.+||+|.+|++.. .+|+|||+|.+.++|+.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----------------------~~~CAFv~ftTR~aAE~Aa 281 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----------------------RKGCAFVTFTTREAAEKAA 281 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----------------------ccccceeeehhhHHHHHHH
Confidence 34578999999999999999999999999999998832 2479999999999999998
Q ss_pred --HccCceeeeeeeEEecCCCC
Q 015821 302 --AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 --~lng~~l~Gr~I~V~~a~~~ 321 (399)
.+|...+.|++|.|.|..+.
T Consensus 282 e~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 282 EKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred HhhcceeeecceEEEEEeCCCc
Confidence 38888899999999998873
No 95
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.4e-08 Score=96.40 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=72.2
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
....|||..|.+-+|.++|.-+|+.||.|.+|.++++.- +|-+-.||||+|.+.+++++|. +
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~k-----------------tgdsLqyaFiEFen~escE~AyFK 300 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRK-----------------TGDSLQYAFIEFENKESCEQAYFK 300 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEeccc-----------------ccchhheeeeeecchhhHHHHHhh
Confidence 357899999999999999999999999999999987652 3445579999999999999998 9
Q ss_pred ccCceeeeeeeEEecCCCC
Q 015821 303 FNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (399)
|++..|..+.|.|.++.+-
T Consensus 301 MdNvLIDDrRIHVDFSQSV 319 (479)
T KOG0415|consen 301 MDNVLIDDRRIHVDFSQSV 319 (479)
T ss_pred hcceeeccceEEeehhhhh
Confidence 9999999999999998653
No 96
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.64 E-value=4.1e-08 Score=104.55 Aligned_cols=111 Identities=23% Similarity=0.347 Sum_probs=83.4
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
.-.++|||||+|+..+++.+|..+|..||.|.+|.+.- ++|||||.+....+|.+||
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----------------------~R~cAfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----------------------PRGCAFIKMVRRQDAEKAL 474 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----------------------CCceeEEEEeehhHHHHHH
Confidence 45579999999999999999999999999999998821 4699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCG 359 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~ 359 (399)
+|....+.++.|+|.|+....... +-.... ...+=|.-||+..-..+|..++..
T Consensus 475 qkl~n~kv~~k~Iki~Wa~g~G~ks--e~k~~w--D~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 475 QKLSNVKVADKTIKIAWAVGKGPKS--EYKDYW--DVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred HHHhcccccceeeEEeeeccCCcch--hhhhhh--hcccCeeEeehHhcCHHHHHhhhh
Confidence 799999999999999997543222 000000 112233445766555557766643
No 97
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.61 E-value=3.8e-08 Score=90.70 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=60.1
Q ss_pred CCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 330 APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 330 ~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+|..+.-..|.|-||-+.++.++|+.+|+.| |.|..|.|++|..|+.++|||||.|....+|+.||
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekY----G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~ 72 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKY----GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDAL 72 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHh----CcccceecccccccccccceeEEEeeecchHHHHH
Confidence 4556677899999999999999999999999 99999999999999999999999998887777664
No 98
>PLN03213 repressor of silencing 3; Provisional
Probab=98.58 E-value=7.1e-08 Score=98.33 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=50.1
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCH--HHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR--DEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~--e~A~~AL 399 (399)
...+||||||++.+++++|..+|+.| |.|..|.|++. +| ||||||+|.+. .++.+||
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeF----GsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAI 67 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPM----GTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLF 67 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHH
Confidence 35789999999999999999999999 99999999954 57 99999999987 5566664
No 99
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=2.6e-08 Score=107.40 Aligned_cols=141 Identities=20% Similarity=0.286 Sum_probs=112.6
Q ss_pred cCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 220 ~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
++....+|||+|||+..+++.+|+..|..+|.|.+|.|-+.+. ++..-||||.|.+...+..
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------------------~~esa~~f~~~~n~dmtp~ 428 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------------------KTESAYAFVSLLNTDMTPS 428 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------------------CcccchhhhhhhccccCcc
Confidence 4567789999999999999999999999999999998844321 2233599999999999998
Q ss_pred HH-HccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCC
Q 015821 300 AL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (399)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~t 378 (399)
|+ .+.+..|....+++.+..+ .....+.++|++|+..+....|...|..| |.|..|.+
T Consensus 429 ak~e~s~~~I~~g~~r~glG~~-----------kst~ttr~~sgglg~w~p~~~l~r~fd~f----Gpir~Idy------ 487 (975)
T KOG0112|consen 429 AKFEESGPLIGNGTHRIGLGQP-----------KSTPTTRLQSGGLGPWSPVSRLNREFDRF----GPIRIIDY------ 487 (975)
T ss_pred cchhhcCCccccCccccccccc-----------ccccceeeccCCCCCCChHHHHHHHhhcc----Ccceeeec------
Confidence 87 6877777555555544432 23456899999999999999999999999 88888766
Q ss_pred CCCccEEEEEecCHHHHHhhC
Q 015821 379 RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 379 g~~kG~AFV~F~s~e~A~~AL 399 (399)
.+..-||||+|.+...++.|+
T Consensus 488 ~hgq~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 488 RHGQPYAYIQYESPPAAQAAT 508 (975)
T ss_pred ccCCcceeeecccCccchhhH
Confidence 234559999999998888763
No 100
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=78.16 Aligned_cols=59 Identities=22% Similarity=0.554 Sum_probs=52.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.-.+.|||+|||+.+|.+++.++|..| |.|..|||-..+ ..+|-|||.|++..+|.+|+
T Consensus 16 evnriLyirNLp~~ITseemydlFGky----g~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~ 74 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKY----GTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKAC 74 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcc----cceEEEEecCcc---CcCceEEEEehHhhhHHHHH
Confidence 346889999999999999999999999 999999996654 46899999999999999873
No 101
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.51 E-value=9.3e-08 Score=92.09 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=67.9
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
+.+.+|+||||.+.+|.++|+..|.+||+|.+|.|.. +|+||.|...++|..|+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------------------------dy~fvh~d~~eda~~air 130 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------------------------DYAFVHFDRAEDAVEAIR 130 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------------------------ceeEEEEeeccchHHHHh
Confidence 4578899999999999999999999999999999833 79999999999999999
Q ss_pred HccCceeeeeeeEEecCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (399)
.||+..|.|+++.|+.+.+.
T Consensus 131 ~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 131 GLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred cccccccccceeeeeeeccc
Confidence 69999999999999998653
No 102
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.47 E-value=1.1e-07 Score=86.19 Aligned_cols=61 Identities=25% Similarity=0.410 Sum_probs=57.4
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...+|||+||+..++++.|.++|-+. |.|..++|++|..+...+|||||+|.+.++|+-||
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqa----gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAi 68 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQA----GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAI 68 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhc----CceeeeecchhhhcccccceeEEEEechhhhHHHH
Confidence 45899999999999999999999998 89999999999999999999999999999998764
No 103
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.45 E-value=3.8e-07 Score=84.16 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=67.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~-G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..-+||..||..+.+..|..+|.+| |.|..+++-|.. .+|.|+|||||+|.+.+.|.-|- .
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnk-----------------rTGNSKgYAFVEFEs~eVA~IaAET 111 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNK-----------------RTGNSKGYAFVEFESEEVAKIAAET 111 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccc-----------------ccCCcCceEEEEeccHHHHHHHHHH
Confidence 4559999999999999999999998 666767663322 36778899999999999999887 6
Q ss_pred ccCceeeeeeeEEecCCCC
Q 015821 303 FNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (399)
||+..|.|+.|.|.+..+.
T Consensus 112 MNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 112 MNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hhhhhhhhheeeeEEeCch
Confidence 9999999999999987543
No 104
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.45 E-value=4.9e-07 Score=90.57 Aligned_cols=144 Identities=15% Similarity=0.203 Sum_probs=102.2
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH-
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~- 302 (399)
.++.|.++|||+++|+++|..++..||.|..+.+.. +. --|||+|.+.++|..-+.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk------Gk-----------------nQAflem~d~~sAvtmv~~ 83 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK------GK-----------------NQAFLEMADEESAVTMVNY 83 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeec------cc-----------------hhhhhhhcchhhhhheeec
Confidence 478899999999999999999999999999887622 11 269999999998876331
Q ss_pred c--cCceeeeeeeEEecCCCC------ccC-C-------------------CC-----CCCCccCcccceeecCCCCCCC
Q 015821 303 F--NMAVIGGNHIRLDRACPP------RKK-L-------------------KG-----EDAPLYDIKKTVFVGNLPFDVK 349 (399)
Q Consensus 303 l--ng~~l~Gr~I~V~~a~~~------~k~-~-------------------~~-----~~~~~~~~~~tLfV~NLp~~~t 349 (399)
+ ---.+.|++|.|+++... ... . .. +..+...+--.++|+|+-+.++
T Consensus 84 y~~~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVs 163 (492)
T KOG1190|consen 84 YTSVTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVS 163 (492)
T ss_pred ccccCccccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeE
Confidence 1 122467888888886321 000 0 00 0001112334678899999999
Q ss_pred HHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 350 DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 350 eedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
-+-|+++|+.| |.|..|.-+... ..=-|.|+|.+...|..|
T Consensus 164 lDVLHqvFS~f----G~VlKIiTF~Kn----n~FQALvQy~d~~sAq~A 204 (492)
T KOG1190|consen 164 LDVLHQVFSKF----GFVLKIITFTKN----NGFQALVQYTDAVSAQAA 204 (492)
T ss_pred HHHHHHHHhhc----ceeEEEEEEecc----cchhhhhhccchhhHHHH
Confidence 99999999999 889876544331 222589999999988876
No 105
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.44 E-value=3.2e-07 Score=94.94 Aligned_cols=82 Identities=15% Similarity=0.336 Sum_probs=70.6
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....|.|||.+|...+-.-+|..+|++||.|+...+++.. ..|- -++|+||++.+.++|.+||
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa----RsPG-------------aRCYGfVTMSts~eAtkCI 464 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA----RSPG-------------ARCYGFVTMSTSAEATKCI 464 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecC----CCCC-------------cceeEEEEecchHHHHHHH
Confidence 4456889999999999999999999999999999886532 2221 3589999999999999999
Q ss_pred -HccCceeeeeeeEEecCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~ 320 (399)
.|+.+.|.|+.|.|..+..
T Consensus 465 ~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 465 EHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred HHhhhhhhcceeeeeeeccc
Confidence 6999999999999999863
No 106
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=1.9e-07 Score=81.02 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=58.0
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....|||.+++..+++++|.+.|+.| |.|.+|.|-.|..||..+|||+|+|.+..+|++||
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dy----GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~ 131 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADY----GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAI 131 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhc----ccccceeeccccccccccceeeeehHhHHHHHHHH
Confidence 35789999999999999999999999 99999999999999999999999999999999985
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.43 E-value=2.3e-07 Score=95.68 Aligned_cols=59 Identities=25% Similarity=0.557 Sum_probs=57.0
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+.|||||+|+++++++|..+|+.. |.|.+++++.|+.+|.++||||++|.+.+.|..|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~----g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~ 77 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV----GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAI 77 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc----CccceeeecccccCCCcCceeeEecCchhhHHHHH
Confidence 899999999999999999999998 99999999999999999999999999999998875
No 108
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.43 E-value=3.2e-07 Score=90.80 Aligned_cols=83 Identities=24% Similarity=0.393 Sum_probs=72.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
..+|||++||.++++++|+++|.+||.|..+.++.+. .+.. .+||+||.|.+.+++.+++...
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~--~~~~---------------~rgFgfv~~~~e~sVdkv~~~~ 159 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK--TTSR---------------PRGFGFVTFDSEDSVDKVTLQK 159 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc--cccc---------------cccceeeEeccccccceecccc
Confidence 4579999999999999999999999999888887755 3333 4599999999999999999999
Q ss_pred CceeeeeeeEEecCCCCccC
Q 015821 305 MAVIGGNHIRLDRACPPRKK 324 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~ 324 (399)
-+.|.|+.+.|..+.+....
T Consensus 160 f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred eeeecCceeeEeeccchhhc
Confidence 99999999999999876543
No 109
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=9e-08 Score=88.98 Aligned_cols=63 Identities=17% Similarity=0.365 Sum_probs=59.6
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||++|...+++.-|...|-+| |.|..|.++.|..++++||||||+|.-.++|.+||
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPF----GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAi 69 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPF----GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAI 69 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccc----cchhhcccccchhcccccceeEEEeeccchhHHHh
Confidence 3456999999999999999999999999 99999999999999999999999999999999886
No 110
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=4.2e-07 Score=89.84 Aligned_cols=79 Identities=20% Similarity=0.406 Sum_probs=70.6
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
.-..|||..+.++.++++|+..|.-||+|..|.+-+.+. .+.++||+||+|.+..+...|+ .
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt-----------------~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-----------------GRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC-----------------CCCccceeeEEeccccchHHHhhh
Confidence 356799999999999999999999999999999977662 2357899999999999999999 6
Q ss_pred ccCceeeeeeeEEecCC
Q 015821 303 FNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (399)
+|-..++|..|+|..+.
T Consensus 272 MNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCV 288 (544)
T ss_pred cchhhcccceEeccccc
Confidence 99999999999998864
No 111
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=3.2e-07 Score=82.78 Aligned_cols=56 Identities=25% Similarity=0.403 Sum_probs=49.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+||+..+++.+|...|..| |.|..|-|.+. +.|||||+|+++-+|..|+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~y----G~lrsvWvArn-----PPGfAFVEFed~RDA~DAv 64 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKY----GPLRSVWVARN-----PPGFAFVEFEDPRDAEDAV 64 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhc----CcceeEEEeec-----CCCceEEeccCcccHHHHH
Confidence 45899999999999999999999999 88998877664 5789999999988887764
No 112
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=4.1e-07 Score=86.84 Aligned_cols=83 Identities=25% Similarity=0.400 Sum_probs=72.3
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
..+.|.|||-.||...++.+|..+|-.||.|.+.++..+.- ++.+++|+||.|.++.+++.||
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRA-----------------TNQSKCFGFVSfDNp~SaQaAI 344 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRA-----------------TNQSKCFGFVSFDNPASAQAAI 344 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhc-----------------cccccceeeEecCCchhHHHHH
Confidence 34479999999999999999999999999999988865542 3456799999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (399)
.+||..|+-++|.|+.-.++
T Consensus 345 qAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 345 QAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred HHhcchhhhhhhhhhhhcCcc
Confidence 79999999999999886654
No 113
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.33 E-value=1.4e-06 Score=92.24 Aligned_cols=90 Identities=23% Similarity=0.380 Sum_probs=75.0
Q ss_pred CCCCcCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHH
Q 015821 216 EGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (399)
Q Consensus 216 ~~~~~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e 295 (399)
..+|+.+...+.|||+||++.++++.|...|..||+|.+|+|+....-.... +.+-||||-|.+..
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~--------------r~r~cgfvafmnR~ 230 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKR--------------RERNCGFVAFMNRA 230 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhc--------------cccccceeeehhhh
Confidence 4466767778889999999999999999999999999999887643211111 22468999999999
Q ss_pred HHHHHH-HccCceeeeeeeEEecCC
Q 015821 296 STEAAL-AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 296 ~A~~Al-~lng~~l~Gr~I~V~~a~ 319 (399)
+|+.|+ .|+|..+.++.+++.|+.
T Consensus 231 D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 231 DAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred hHHHHHHHhcceeeeeeeeeecccc
Confidence 999999 699999999999999984
No 114
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.32 E-value=7.9e-07 Score=84.82 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=69.7
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
+.+.|||+|+.+.+|.++|..+|..||.|..|.|+.+.. . +..+|||||+|.+.+.++.||.|
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~--~---------------~~~k~~~yvef~~~~~~~~ay~l 162 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKF--R---------------GHPKGFAYVEFSSYELVEEAYKL 162 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeecccc--C---------------CCcceeEEEecccHhhhHHHhhc
Confidence 367799999999999999999999999999888877653 2 23469999999999999999999
Q ss_pred cCceeeeeeeEEecCC
Q 015821 304 NMAVIGGNHIRLDRAC 319 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (399)
|+..|.|+.|.|.+..
T Consensus 163 ~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 163 DGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCcccccccceeeeee
Confidence 9999999999998864
No 115
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.30 E-value=1.1e-06 Score=90.14 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=66.7
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
.....+|||+|||++++..+|.++|..||.|...+|..... .+++.+||||+|.+..+++.||
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~-----------------~~~~~~fgFV~f~~~~~~~~~i 347 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP-----------------GGKNPCFGFVEFENAAAVQNAI 347 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc-----------------CCCcCceEEEEEeecchhhhhh
Confidence 34456699999999999999999999999998877744320 1223389999999999999999
Q ss_pred HccCceeeeeeeEEecCC
Q 015821 302 AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~ 319 (399)
..+-..++++.+.|.--.
T Consensus 348 ~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 348 EASPLEIGGRKLNVEEKR 365 (419)
T ss_pred hcCccccCCeeEEEEecc
Confidence 888888999999997754
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.30 E-value=9.1e-06 Score=80.85 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=116.9
Q ss_pred CCCcCEEEEecCCCC-CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~-vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
..+.+.++|.+|... +.-+-|..+|-.||.|..|.++... -|.|.|++.+..+++.|
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~ 341 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERA 341 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHH
Confidence 345688999999875 6778899999999999999986643 28999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCCcc----------------------CCC------CCCCCccCcccceeecCCCCCCCHH
Q 015821 301 L-AFNMAVIGGNHIRLDRACPPRK----------------------KLK------GEDAPLYDIKKTVFVGNLPFDVKDE 351 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~k----------------------~~~------~~~~~~~~~~~tLfV~NLp~~~tee 351 (399)
+ .||+..+.|.+|.|..+....- ..+ ........++++|+.-|.|..+|++
T Consensus 342 v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe 421 (494)
T KOG1456|consen 342 VTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEE 421 (494)
T ss_pred HHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHH
Confidence 9 6999999999999988753210 000 0112235678999999999999999
Q ss_pred HHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 352 EIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 352 dL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.|..+|..... ....|+|+.-.. ...--+.++|++.++|..||
T Consensus 422 ~l~~i~nek~v---~~~svkvFp~ks--erSssGllEfe~~s~Aveal 464 (494)
T KOG1456|consen 422 QLIGICNEKDV---PPTSVKVFPLKS--ERSSSGLLEFENKSDAVEAL 464 (494)
T ss_pred HHHHHhhhcCC---CcceEEeecccc--cccccceeeeehHHHHHHHH
Confidence 99999987633 256677766542 23346799999999998875
No 117
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.27 E-value=1.9e-06 Score=82.51 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=68.8
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
...+|+|.|||+.|+.++|+++|..||.+..+-|.+++ .|.+.|.|-|.|...++|..|+ .
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~------------------~G~s~Gta~v~~~r~~DA~~avk~ 143 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR------------------AGRSLGTADVSFNRRDDAERAVKK 143 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC------------------CCCCCccceeeecchHhHHHHHHH
Confidence 35789999999999999999999999987777664433 3456799999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCCC
Q 015821 303 FNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (399)
+++..++|+.|.+....++
T Consensus 144 ~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 144 YNGVALDGRPMKIEIISSP 162 (243)
T ss_pred hcCcccCCceeeeEEecCc
Confidence 9999999999999887654
No 118
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=9.7e-07 Score=80.32 Aligned_cols=58 Identities=26% Similarity=0.498 Sum_probs=51.2
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||.++-+.+|..+|.+| |.|..|.|-..+ .+.+||||+|+++-+|+.||
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKy----g~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAi 62 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKY----GRIREIELKNRP---GPPPFAFVEFEDPRDAEDAI 62 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhh----cceEEEEeccCC---CCCCeeEEEecCccchhhhh
Confidence 46899999999999999999999999 999999885543 35679999999999998886
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.2e-06 Score=86.57 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=59.7
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.++.+.|||.-|.+-++++||.-+|+.| |.|.+|.|++|..||.+..||||+|.+.+++++|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrF----G~i~sceVIRD~ktgdsLqyaFiEFen~escE~Ay 298 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRF----GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAY 298 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhc----ccceeeeEEecccccchhheeeeeecchhhHHHHH
Confidence 4577999999999999999999999999 99999999999999999999999999999999873
No 120
>smart00361 RRM_1 RNA recognition motif.
Probab=98.21 E-value=2.6e-06 Score=65.97 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=40.3
Q ss_pred HHHHHHHhh----ccCCCCCCeEEEE-EeecCCC--CCCccEEEEEecCHHHHHhhC
Q 015821 350 DEEIYQLFC----GLNDLESSVEAVR-VIRHPHM--RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 350 eedL~~~Fs----~f~~~~G~I~~Vr-I~~d~~t--g~~kG~AFV~F~s~e~A~~AL 399 (399)
+++|+++|+ .| |.|..|. |+.+..+ |.++|||||+|.+.++|..||
T Consensus 2 ~~~l~~~~~~~~~~f----G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~ 54 (70)
T smart00361 2 DEDFEREFSEEEEYF----GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAI 54 (70)
T ss_pred chhHHHHHHHHHHhc----CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHH
Confidence 578889998 88 9999995 7777766 899999999999999999885
No 121
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.21 E-value=2.1e-06 Score=86.75 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=63.7
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
.+..++|||+|||++.|.+.|++-|..||.|..+.|+. .|.++| .|.|.++++|+.|+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--------------------~GkskG--VVrF~s~edAEra~ 590 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--------------------NGKSKG--VVRFFSPEDAERAC 590 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--------------------cCCccc--eEEecCHHHHHHHH
Confidence 45678899999999999999999999999998776622 133445 89999999999999
Q ss_pred -HccCceeeeeeeEEec
Q 015821 302 -AFNMAVIGGNHIRLDR 317 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~ 317 (399)
.+++..|.||.|.|.+
T Consensus 591 a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 591 ALMNGSRLDGRNIKVTY 607 (608)
T ss_pred HHhccCcccCceeeeee
Confidence 5999999999999976
No 122
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=1.6e-06 Score=89.93 Aligned_cols=72 Identities=31% Similarity=0.409 Sum_probs=63.2
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
.-..++|+|-|||..++.++|+.+|+.||+|..|+... ..+|.+||+|.+..+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----------------------~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----------------------NKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----------------------ccCceEEEEEeehHhHHHHH
Confidence 34478999999999999999999999999998877622 13589999999999999999
Q ss_pred -HccCceeeeeeeEE
Q 015821 302 -AFNMAVIGGNHIRL 315 (399)
Q Consensus 302 -~lng~~l~Gr~I~V 315 (399)
+|++..|.|+.|..
T Consensus 130 k~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 130 KALNRREIAGKRIKR 144 (549)
T ss_pred HHHHHHHhhhhhhcC
Confidence 79999999999883
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.16 E-value=4e-06 Score=77.50 Aligned_cols=63 Identities=24% Similarity=0.401 Sum_probs=56.8
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
......+||+.+|.-+.+.+|..+|.+|+ |.|..+++-|+..||.++|||||+|.+.+.|.-|
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~---g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~Ia 108 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFG---GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIA 108 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcC---CeeEEEEeecccccCCcCceEEEEeccHHHHHHH
Confidence 44567899999999999999999999984 8899999999999999999999999999988754
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.10 E-value=1.6e-06 Score=86.55 Aligned_cols=149 Identities=20% Similarity=0.176 Sum_probs=107.4
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHccC
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNM 305 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~lng 305 (399)
..|-|.||.+.+|.++++.+|.-.|.|..++|.... .+...+ ...-.|||.|.+...+..|-.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~-~d~~~p-------------v~sRtcyVkf~d~~sv~vaQhLtn 73 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNV-DDSKIP-------------VISRTCYVKFLDSQSVTVAQHLTN 73 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCC-CCccCc-------------ceeeeEEEeccCCcceeHHhhhcc
Confidence 479999999999999999999999999999884321 122222 234689999999999999998989
Q ss_pred ceeeeeeeEEecCCCCcc-----------------------CCCCCC--------------CCc----------cCcccc
Q 015821 306 AVIGGNHIRLDRACPPRK-----------------------KLKGED--------------APL----------YDIKKT 338 (399)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k-----------------------~~~~~~--------------~~~----------~~~~~t 338 (399)
+.|-++.|.|-.+..... ...++. .|. ....++
T Consensus 74 tvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt 153 (479)
T KOG4676|consen 74 TVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRT 153 (479)
T ss_pred ceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhh
Confidence 988888888766531100 000000 000 112368
Q ss_pred eeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHH
Q 015821 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEW 396 (399)
Q Consensus 339 LfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~ 396 (399)
|+|++|+..+...++.++|..+ |.|.+.++.- |...-||-|.|....+..
T Consensus 154 ~~v~sl~~~~~l~e~~e~f~r~----Gev~ya~~as----k~~s~~c~~sf~~qts~~ 203 (479)
T KOG4676|consen 154 REVQSLISAAILPESGESFERK----GEVSYAHTAS----KSRSSSCSHSFRKQTSSK 203 (479)
T ss_pred hhhhcchhhhcchhhhhhhhhc----chhhhhhhhc----cCCCcchhhhHhhhhhHH
Confidence 9999999999999999999998 8898877743 445567778886544433
No 125
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.09 E-value=2.3e-05 Score=78.06 Aligned_cols=142 Identities=16% Similarity=0.234 Sum_probs=106.8
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
..+-.|.|++|-..+++.+|.+.++.||+|.-|.+ .|. +--|+|+|.+.+.|..|+.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~--~P~---------------------~r~alvefedi~~akn~Vn 85 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC--MPH---------------------KRQALVEFEDIEGAKNCVN 85 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEe--ccc---------------------cceeeeeeccccchhhhee
Confidence 34567999999999999999999999999966655 231 2369999999999999983
Q ss_pred ---ccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceee--cCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCC
Q 015821 303 ---FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFV--GNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (399)
Q Consensus 303 ---lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV--~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~ 377 (399)
-+...+.|+.-.+.++....-.+.+++.. .+...|.+ -|--+.+|.+-|+.++..+ |.|..|-|++.
T Consensus 86 faa~n~i~i~gq~Al~NyStsq~i~R~g~es~--~pN~VLl~TIlNp~YpItvDVly~Icnp~----GkVlRIvIfkk-- 157 (494)
T KOG1456|consen 86 FAADNQIYIAGQQALFNYSTSQCIERPGDESA--TPNKVLLFTILNPQYPITVDVLYTICNPQ----GKVLRIVIFKK-- 157 (494)
T ss_pred hhccCcccccCchhhcccchhhhhccCCCCCC--CCCeEEEEEeecCccccchhhhhhhcCCC----CceEEEEEEec--
Confidence 45567788887777775443333333222 22333433 4666789999999999998 99999988776
Q ss_pred CCCCccEEEEEecCHHHHHhh
Q 015821 378 MRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 378 tg~~kG~AFV~F~s~e~A~~A 398 (399)
+|. .|.|+|.+.+.|++|
T Consensus 158 ngV---QAmVEFdsv~~AqrA 175 (494)
T KOG1456|consen 158 NGV---QAMVEFDSVEVAQRA 175 (494)
T ss_pred cce---eeEEeechhHHHHHH
Confidence 343 699999999999887
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.02 E-value=2.5e-05 Score=64.78 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=58.5
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hcc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ln 304 (399)
+||.|+|||...|.+.|.+++..... ....+...|. ++.++.+.|||||-|.+++.|.... .++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~-g~yDF~YLPi--------------Df~~~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK-GKYDFFYLPI--------------DFKNKCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc-CcceEEEeee--------------eccCCCceEEEEEEcCCHHHHHHHHHHHc
Confidence 68999999999999999998886321 2344444443 2234567899999999999999887 688
Q ss_pred Cceee----eeeeEEecCC
Q 015821 305 MAVIG----GNHIRLDRAC 319 (399)
Q Consensus 305 g~~l~----Gr~I~V~~a~ 319 (399)
|..|. .+.+.|.+|.
T Consensus 67 g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 67 GKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred CCccccCCCCcEEEEehhH
Confidence 88774 3445666654
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.93 E-value=1.7e-05 Score=75.49 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=103.7
Q ss_pred cCEEEEecCCCCCcHHH-H--HHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 225 LRTIFVGNLPLKVKKKT-L--IKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~-L--~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....|++++-..+..+- | ...|+.|-.+....+.++ ..+.-.+++|+.|........+-
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~------------------~p~~~~~~~~~~~k~s~a~~k~~ 157 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD------------------RPQPIRPEAFESFKASDALLKAE 157 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhc------------------CCCccCcccccCcchhhhhhhhc
Confidence 34467777766665544 2 455555544433333221 12334689999999877766665
Q ss_pred -HccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~ 380 (399)
.-++..+.-+.|++..........-. .......+||.+.|.-+++++-|...|..| -.....++++|..||+
T Consensus 158 ~~~~~Kki~~~~VR~a~gtswedPsl~---ew~~~DfRIfcgdlgNevnd~vl~raf~Kf----psf~~akviRdkRTgK 230 (290)
T KOG0226|consen 158 TEKEKKKIGKPPVRLAAGTSWEDPSLA---EWDEDDFRIFCGDLGNEVNDDVLARAFKKF----PSFQKAKVIRDKRTGK 230 (290)
T ss_pred cccccccccCcceeeccccccCCcccc---cCccccceeecccccccccHHHHHHHHHhc----cchhhccccccccccc
Confidence 35566666666776665543322111 113456899999999999999999999999 4566778999999999
Q ss_pred CccEEEEEecCHHHHHhhC
Q 015821 381 GKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 381 ~kG~AFV~F~s~e~A~~AL 399 (399)
++||+||.|.+..++.+|+
T Consensus 231 SkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 231 SKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred cccceeeeecCHHHHHHHH
Confidence 9999999999999999885
No 128
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.76 E-value=8.1e-05 Score=61.74 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=53.0
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHh
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWE 397 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~ 397 (399)
+||.|+|+|-..|.++|.+++...- .|....+.++.|..++-+.|||||.|.+++.|..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~ 60 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIR 60 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHH
Confidence 6899999999999999999997542 3889999999999999999999999999998864
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.76 E-value=3.4e-05 Score=76.23 Aligned_cols=56 Identities=27% Similarity=0.491 Sum_probs=50.3
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
.....+|||+||...+++.+|+++|.+| |.|.+|+++.. +|.|||+|.++++|+.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqy----Geirsi~~~~~------~~CAFv~ftTR~aAE~A 280 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQY----GEIRSIRILPR------KGCAFVTFTTREAAEKA 280 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhc----CCeeeEEeecc------cccceeeehhhHHHHHH
Confidence 4456899999999999999999999999 99999999655 45999999999999987
No 130
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.72 E-value=5.8e-05 Score=70.77 Aligned_cols=58 Identities=21% Similarity=0.421 Sum_probs=50.8
Q ss_pred cccceeecCCCCCCCHHHHHH----HhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQ----LFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~----~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+..||||.||+..+..++|+. +|++| |.|..|...+. .+.+|-|||.|.+.+.|-.|+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqf----G~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~ 69 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQF----GKILDISAFKT---PKMRGQAFVVFKETEAASAAL 69 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhh----CCeEEEEecCC---CCccCceEEEecChhHHHHHH
Confidence 445999999999999999987 99999 99999987654 678999999999998887764
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.69 E-value=5.6e-05 Score=80.31 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=106.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
.+.+-+.++++.+...++++||...- |.++.|..+.. .+...|.++|.|....++++|++.|
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v-----------------~~~~tG~~~v~f~~~~~~q~A~~rn 372 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRV-----------------APPQTGRKTVMFTPQAPFQNAFTRN 372 (944)
T ss_pred hheeeecccccccccchhhhhcCccc-ccccchhhhhc-----------------CCCcCCceEEEecCcchHHHHHhcC
Confidence 45567789999999999999987522 22232211111 1122589999999999999999999
Q ss_pred CceeeeeeeEEecCCCCccC-----------------------------CCCCC-CCccCcccceeecCCCCCCCHHHHH
Q 015821 305 MAVIGGNHIRLDRACPPRKK-----------------------------LKGED-APLYDIKKTVFVGNLPFDVKDEEIY 354 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~-----------------------------~~~~~-~~~~~~~~tLfV~NLp~~~teedL~ 354 (399)
...+-.|.|.|..+...... ..+.. ........+|||..||..++..++.
T Consensus 373 ~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v 452 (944)
T KOG4307|consen 373 PSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPV 452 (944)
T ss_pred chhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchh
Confidence 99888888888775321000 00000 0113356799999999999999999
Q ss_pred HHhhccCCCCCCeEE-EEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 355 QLFCGLNDLESSVEA-VRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 355 ~~Fs~f~~~~G~I~~-VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
++|... -.|+. |.|.+.+ +++.++.|||.|....++..|
T Consensus 453 ~~f~~~----~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a 492 (944)
T KOG4307|consen 453 NKFMGA----AAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTA 492 (944)
T ss_pred hhhhhh----hhhhheeEeccCC-cccccchhhheeccccccchh
Confidence 999875 34555 6676665 488999999999997776655
No 132
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.65 E-value=4.7e-05 Score=81.74 Aligned_cols=56 Identities=20% Similarity=0.481 Sum_probs=51.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||||+|+.++++.||.++|..| |.|.+|.++ .++|+|||.+..+.+|.+||
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feef----GeiqSi~li------~~R~cAfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEF----GEIQSIILI------PPRGCAFIKMVRRQDAEKAL 474 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhc----ccceeEeec------cCCceeEEEEeehhHHHHHH
Confidence 357999999999999999999999999 999999884 46889999999999999885
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.64 E-value=7.4e-06 Score=82.56 Aligned_cols=129 Identities=16% Similarity=0.280 Sum_probs=96.9
Q ss_pred EEEEecCCCCCcHHHHHHHhccc--CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKF--GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~--G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.+|++||.+.++..+|..+|... |.--.+.+ ..|||||.+.+...|.+|+ .+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------------------------k~gyafvd~pdq~wa~kaie~~ 57 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------------------------KSGYAFVDCPDQQWANKAIETL 57 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------------------------ecceeeccCCchhhhhhhHHhh
Confidence 58999999999999999999864 21111111 1489999999999999999 57
Q ss_pred cCc-eeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEee-cCCCCCC
Q 015821 304 NMA-VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR-HPHMRVG 381 (399)
Q Consensus 304 ng~-~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~-d~~tg~~ 381 (399)
+|. .+.|..+.|..+.+.. ..++.+-|+|+|+..-++.|..++..| |.+..|..+. +..+.
T Consensus 58 sgk~elqGkr~e~~~sv~kk-----------qrsrk~Qirnippql~wevld~Ll~qy----g~ve~~eqvnt~~eta-- 120 (584)
T KOG2193|consen 58 SGKVELQGKRQEVEHSVPKK-----------QRSRKIQIRNIPPQLQWEVLDSLLAQY----GTVENCEQVNTDSETA-- 120 (584)
T ss_pred chhhhhcCceeeccchhhHH-----------HHhhhhhHhcCCHHHHHHHHHHHHhcc----CCHhHhhhhccchHHH--
Confidence 766 6899999998876543 235779999999999999999999999 8899886533 33221
Q ss_pred ccEEEEEecCHHHHHhhC
Q 015821 382 KGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 382 kG~AFV~F~s~e~A~~AL 399 (399)
..-|+|.+.+.+..||
T Consensus 121 --vvnvty~~~~~~~~ai 136 (584)
T KOG2193|consen 121 --VVNVTYSAQQQHRQAI 136 (584)
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 2235666666665553
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.64 E-value=5.2e-05 Score=72.26 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=65.8
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
....||+|.|.-+++++.|...|.+|-.-...++.++. .+|+++||+||.|.++.++..|+ +
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk-----------------RTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK-----------------RTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccc-----------------cccccccceeeeecCHHHHHHHHHh
Confidence 35679999999999999999999998766555554432 25678899999999999999999 7
Q ss_pred ccCceeeeeeeEEecCC
Q 015821 303 FNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (399)
+||..++.+.|.+..+.
T Consensus 252 m~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKSE 268 (290)
T ss_pred hcccccccchhHhhhhh
Confidence 99999999988776543
No 135
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.59 E-value=0.0001 Score=54.09 Aligned_cols=38 Identities=24% Similarity=0.642 Sum_probs=32.5
Q ss_pred HHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 353 L~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|+++|++| |.|..|.+.... +++|||+|.+.++|..|+
T Consensus 1 L~~~f~~f----G~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~ 38 (56)
T PF13893_consen 1 LYKLFSKF----GEVKKIKIFKKK-----RGFAFVEFASVEDAQKAI 38 (56)
T ss_dssp HHHHHTTT----S-EEEEEEETTS-----TTEEEEEESSHHHHHHHH
T ss_pred ChHHhCCc----ccEEEEEEEeCC-----CCEEEEEECCHHHHHHHH
Confidence 68899999 999999997663 689999999999999884
No 136
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=6.5e-06 Score=88.97 Aligned_cols=152 Identities=19% Similarity=0.182 Sum_probs=115.4
Q ss_pred CEEEEecCCCCCcHH-HHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCce-eEEEeeCCHHHHHHHHHc
Q 015821 226 RTIFVGNLPLKVKKK-TLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV-HAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 226 rtVfVgNLP~~vTee-~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG-~AFV~F~s~e~A~~Al~l 303 (399)
+..++.|+.+..... .....|..+|.|..|+++.. +.. .+.+ ++++++....+++.|+..
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~-----g~k-------------~h~q~~~~~~~s~~~~~esat~p 633 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKR-----GFK-------------AHEQPQQQKVQSKHGSAESATVP 633 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccc-----ccc-------------ccccchhhhhhccccchhhcccc
Confidence 446777887777665 56778889999999887321 110 1122 789999999999999998
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCCCC-ccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCc
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGEDAP-LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~-~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~k 382 (399)
.+..+.++.+.|..+.+..+.......+ ......++||+||+..+...+|...|..+ |.+..+++......+..+
T Consensus 634 a~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~----~~~e~vqi~~h~n~~~~r 709 (881)
T KOG0128|consen 634 AGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPS----GTIEVVQIVIHKNEKRFR 709 (881)
T ss_pred cccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCcc----chhhhHHHHHHhhccccc
Confidence 8888999999998887654322111111 12345789999999999999999999998 777777776555679999
Q ss_pred cEEEEEecCHHHHHhhC
Q 015821 383 GIAYVLFKTRDEEWEII 399 (399)
Q Consensus 383 G~AFV~F~s~e~A~~AL 399 (399)
|+|||.|..++++.+||
T Consensus 710 G~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 710 GKAYVEFLKPEHAGAAV 726 (881)
T ss_pred cceeeEeecCCchhhhh
Confidence 99999999999998875
No 137
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.55 E-value=0.00017 Score=58.09 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=45.2
Q ss_pred CEEEEecCCCCCcHHHHHH----HhcccCC-eeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 226 RTIFVGNLPLKVKKKTLIK----EFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~----~Fs~~G~-I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
..|||.|||.+.....|.. ++..||. |.+|. .|.|+|.|.+++.|..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------------------~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------------------GGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------------------CCEEEEEeCCHHHHHHH
Confidence 3599999999988776654 5556763 43331 26899999999999999
Q ss_pred H-HccCceeeeeeeEEecCC
Q 015821 301 L-AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~ 319 (399)
+ .|+|..+.|+.|.|.+..
T Consensus 56 ~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHTT--SSSS--EEESS-
T ss_pred HHhhcccccccceEEEEEcC
Confidence 9 699999999999999974
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.54 E-value=8.7e-05 Score=76.38 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=50.4
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+|||+|||++++..+|.++|..| |.|...+|....-.+...+||||+|.+..++..||
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F----G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i 347 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF----GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAI 347 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc----ccccccceEEeccCCCcCceEEEEEeecchhhhhh
Confidence 3559999999999999999999999 99999888764312334499999999999998876
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.51 E-value=0.00013 Score=70.10 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=54.8
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+|+|.|||+.++.+||+++|..| |.+..+-|..++. |.+.|.|-|.|...++|.+||
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~----~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~av 141 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEF----GELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAV 141 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHh----ccceEEeeccCCC-CCCCccceeeecchHhHHHHH
Confidence 4789999999999999999999999 8899999999975 999999999999999998875
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.43 E-value=0.00011 Score=70.09 Aligned_cols=61 Identities=28% Similarity=0.282 Sum_probs=56.7
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....+||+|+.+.+|.+++...|+.| |.|..|.|+.|...|+++|||||.|.+.+.++.||
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~C----g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay 160 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESC----GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAY 160 (231)
T ss_pred CCceEEEeccccccccchhhheeecc----CCccceeeeccccCCCcceeEEEecccHhhhHHHh
Confidence 45789999999999999999999999 99999999999998999999999999999888775
No 141
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.42 E-value=0.00018 Score=75.11 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=56.9
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.|+|.+|...+-..||.+||+.| |.|....|+++..+-..++|+||++.+..+|.+||
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKy----GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI 464 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKY----GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCI 464 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHh----cceeceeeeecCCCCCcceeEEEEecchHHHHHHH
Confidence 45789999999999999999999999 99999999999888889999999999999999886
No 142
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.32 E-value=0.00039 Score=68.68 Aligned_cols=118 Identities=13% Similarity=0.250 Sum_probs=75.4
Q ss_pred CEEEEecCCCCCcHHH----H--HHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 226 RTIFVGNLPLKVKKKT----L--IKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 226 rtVfVgNLP~~vTee~----L--~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
.-|||-+||+.+-.++ | .++|.+||.|..|.+-+ +.+ .+++..+.--.||.|.+.++|..
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk------kt~--------s~nst~~h~gvYITy~~kedAar 180 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK------KTS--------SLNSTASHAGVYITYSTKEDAAR 180 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc------ccc--------ccccccccceEEEEecchHHHHH
Confidence 4599999999987666 2 46999999998887722 111 11111121224999999999999
Q ss_pred HH-HccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCC---CCCCHHHHHHHhh
Q 015821 300 AL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP---FDVKDEEIYQLFC 358 (399)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp---~~~teedL~~~Fs 358 (399)
|| +.+|..++||.|+..+..-+.=..... ....+...++|+.--. ...+.++|...-.
T Consensus 181 cIa~vDgs~~DGr~lkatYGTTKYCtsYLR-n~~CpNp~CMyLHEpg~e~Ds~tK~el~n~qh 242 (480)
T COG5175 181 CIAEVDGSLLDGRVLKATYGTTKYCTSYLR-NAVCPNPDCMYLHEPGPEKDSLTKDELCNSQH 242 (480)
T ss_pred HHHHhccccccCceEeeecCchHHHHHHHc-CCCCCCCCeeeecCCCcccccccHHHHhhhhh
Confidence 99 699999999999998864321000000 1113344566665332 2357778876653
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.12 E-value=0.00032 Score=69.11 Aligned_cols=80 Identities=33% Similarity=0.520 Sum_probs=66.9
Q ss_pred cCEEE-EecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 225 LRTIF-VGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 225 ~rtVf-VgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
..++| |+||++.++.++|..+|..||.|..++++..+ .+ +..+|||||.|........++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~--~s---------------~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE--ES---------------GDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCC--Cc---------------cchhhhhhhhhhhchhHHHHhhc
Confidence 44555 99999999999999999999999999986644 33 34569999999999999998855
Q ss_pred cCceeeeeeeEEecCCCC
Q 015821 304 NMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (399)
+...+.++++.+....+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccCcccCcccccccCCCC
Confidence 777889999999988654
No 144
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.11 E-value=0.00094 Score=62.80 Aligned_cols=62 Identities=27% Similarity=0.387 Sum_probs=46.5
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+||||.+||-++..-+|+.+|..|.. --...--..+.....++-+|||+|.+..+|.+|+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~G---YEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aam 94 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHG---YEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAM 94 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCC---ccceeeeeccCCCccccceEEEEecchHHHHHHH
Confidence 4699999999999999999999998853 2222212233333456689999999999998874
No 145
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.06 E-value=0.00081 Score=68.32 Aligned_cols=82 Identities=28% Similarity=0.291 Sum_probs=63.3
Q ss_pred CCCCcCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeee---cccCCCCCccchhhhhhcccCCCceeEEEeeC
Q 015821 216 EGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV---PIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (399)
Q Consensus 216 ~~~~~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~---~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~ 292 (399)
..++++.-.+++|.+-|||.+-.-+.|.++|+.||.|.+|+|+.. +....+.+.++-. -..+-+|+|+|.
T Consensus 222 p~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~-------~~tk~~AlvEye 294 (484)
T KOG1855|consen 222 PEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFE-------LQTKECALVEYE 294 (484)
T ss_pred CCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchh-------hhhhhhhhhhhh
Confidence 445666677999999999999999999999999999999999765 4333444432211 123458999999
Q ss_pred CHHHHHHHHHcc
Q 015821 293 SEQSTEAALAFN 304 (399)
Q Consensus 293 s~e~A~~Al~ln 304 (399)
..+.|.+|.++.
T Consensus 295 ~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 295 EVEAARKARELL 306 (484)
T ss_pred hhHHHHHHHHhh
Confidence 999999998644
No 146
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.96 E-value=0.0018 Score=69.31 Aligned_cols=74 Identities=22% Similarity=0.386 Sum_probs=62.4
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I-~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
+.|-+.|+|++++-+||.+||..|-.+ .+|++++. +.+.+ .|-|.|-|.+.+.|..|. .|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n---d~G~p---------------TGe~mvAfes~~eAr~A~~dl 929 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN---DDGVP---------------TGECMVAFESQEEARRASMDL 929 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec---CCCCc---------------ccceeEeecCHHHHHhhhhcc
Confidence 478999999999999999999999887 55666443 33443 599999999999999998 79
Q ss_pred cCceeeeeeeEEec
Q 015821 304 NMAVIGGNHIRLDR 317 (399)
Q Consensus 304 ng~~l~Gr~I~V~~ 317 (399)
+++.|..+.|.+.+
T Consensus 930 ~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 930 DGQKIRNRVVSLRI 943 (944)
T ss_pred ccCcccceeEEEEe
Confidence 99999999988764
No 147
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.93 E-value=0.001 Score=55.93 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=34.5
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..|+|.+++..++.++|+++|+.| |.|.+|.+.+.. ..|||.|.+.+.|+.||
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~----g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF----GEVAYVDFSRGD------TEGYVRFKTPEAAQKAL 54 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS------EEEEE--TT-------SEEEEEESS---HHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc----CCcceEEecCCC------CEEEEEECCcchHHHHH
Confidence 468899999999999999999999 899999886653 37999999999998874
No 148
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.89 E-value=0.0039 Score=52.08 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=50.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEE-EeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~-i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
.+.|.|=+.|+.. ...|..+|++||.|.+.. +.+.. .+.. .........+..|.|.++.+|.+||..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~---~~~~--------~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSS---SGIN--------PYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG---------------------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccc---cccc--------cccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 4668899999984 457778999999997653 10000 0000 000011235899999999999999999
Q ss_pred cCceeeeeeeE-EecC
Q 015821 304 NMAVIGGNHIR-LDRA 318 (399)
Q Consensus 304 ng~~l~Gr~I~-V~~a 318 (399)
||..|.|..|. |.+.
T Consensus 74 NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 74 NGTIFSGSLMVGVKPC 89 (100)
T ss_dssp TTEEETTCEEEEEEE-
T ss_pred CCeEEcCcEEEEEEEc
Confidence 99999886554 4444
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.86 E-value=0.0013 Score=65.60 Aligned_cols=89 Identities=22% Similarity=0.204 Sum_probs=70.6
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
....+|||-+||..+++.+|.++|.+||.|.. ...+.+|+. .|-....++..+|-|.|.|.+...|+.|+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-------nK~t~kPki--~~y~dkeT~~~KGeatvS~~D~~~akaai~ 134 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKR-------NKRTGKPKI--KIYTDKETGAPKGEATVSYEDPPAAKAAIE 134 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceecc-------CCCCCCcch--hccccccccCcCCceeeeecChhhhhhhhh
Confidence 44578999999999999999999999997632 112333431 13334467888999999999999999999
Q ss_pred HccCceeeeeeeEEecCCC
Q 015821 302 AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~ 320 (399)
-+++..|.|..|.|..+..
T Consensus 135 ~~agkdf~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 135 WFAGKDFCGNTIKVSLAER 153 (351)
T ss_pred hhccccccCCCchhhhhhh
Confidence 4999999999999988753
No 150
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.77 E-value=0.0029 Score=46.59 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=41.4
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
+.|-|.|.|++..+ .|..+|..||.|..+.+.. ..-+.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~-----------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE-----------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC-----------------------CCcEEEEEECCHHHHHhhC
Confidence 56889999987765 4556999999999988731 1138999999999999985
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.77 E-value=0.003 Score=46.49 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=42.4
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+.|-|.|.+.... +.+..+|.+| |.|..+.+.. .....||.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~f----GeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASF----GEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhc----CCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 5688899987765 4566688899 9999998862 2448999999999999997
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.75 E-value=0.004 Score=52.35 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=34.3
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
+.|+|.+++..++-++|+.+|+.||.|.-|.+.. + ...|||.|.++++|+.|+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~------G-----------------~~~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR------G-----------------DTEGYVRFKTPEAAQKAL 54 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T------T------------------SEEEEEESS---HHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC------C-----------------CCEEEEEECCcchHHHHH
Confidence 4689999999999999999999999988877622 1 137999999999999998
No 153
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=0.0012 Score=69.13 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=51.3
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|+|-|||..++.++|+.+|+.| |+|..|+.- -..+|.+||+|-+.-+|++||
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~y----Geir~ir~t-----~~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAY----GEIREIRET-----PNKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhh----cchhhhhcc-----cccCceEEEEEeehHhHHHHH
Confidence 4567999999999999999999999999 999997763 446789999999999998885
No 154
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.68 E-value=0.0011 Score=62.16 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=52.5
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+..+||||+||-..++++-|.++|-+. |.|..|.|+.+.+ +..+ ||||.|.+.-+..-|+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~Elfiqa----GPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~ 66 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQA----GPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAG 66 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhcc----CceEEEeCCCCcc-CCCc-eeeeecccccchhhhh
Confidence 3456899999999999999999999998 8899999998876 6666 9999999987766553
No 155
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.0015 Score=61.52 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=60.9
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...+.++|.||+..+...+|..+|..+|.+....+ ..+++||+|...+++..|+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------------------------~~~~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------------------------RRNFAFVEFSEQEDAKRALE 151 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------------------------hccccceeehhhhhhhhcch
Confidence 34577999999999999999999999999854433 1379999999999999999
Q ss_pred HccCceeeeeeeEEecC
Q 015821 302 AFNMAVIGGNHIRLDRA 318 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a 318 (399)
.|++..+.|+.|.+...
T Consensus 152 ~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 152 KLDGKKLNGRRISVEKN 168 (216)
T ss_pred hccchhhcCceeeeccc
Confidence 69999999999999544
No 156
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.43 E-value=0.0031 Score=60.41 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=58.5
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..-.||+++||+.+...-|+++|+.||.|-.|-|-... .+.. .+-..+..+.+...--|.|+|.+-..|..+. .
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~--~s~~---~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~ 147 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPED--DSKR---AARKRKGGNYKKLYSEGWVEFISKRVAKRIAEL 147 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchh--hHHH---HHHhhcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999888773322 1100 0000001122223334679999999998866 7
Q ss_pred ccCceeeeee
Q 015821 303 FNMAVIGGNH 312 (399)
Q Consensus 303 lng~~l~Gr~ 312 (399)
||+..|+|+.
T Consensus 148 Lnn~~Iggkk 157 (278)
T KOG3152|consen 148 LNNTPIGGKK 157 (278)
T ss_pred hCCCccCCCC
Confidence 9999998875
No 157
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.43 E-value=0.0049 Score=61.31 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=50.8
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeE--------EEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~--------~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...|||.|||.++|.+++.++|+.| |.|. .|.|.++.. |..+|-|.+.|--.+++.-||
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKc----GiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~ 200 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKC----GIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAI 200 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhc----ceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHH
Confidence 3559999999999999999999999 6554 378888865 999999999999888887764
No 158
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.36 E-value=0.0034 Score=67.38 Aligned_cols=61 Identities=18% Similarity=0.360 Sum_probs=53.2
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecC---CCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP---HMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~---~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.|||+||++.++++.|...|..| |.|.+|+|+... .....+.+|||-|-++.+|++||
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrf----gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~ 236 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRF----GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERAL 236 (877)
T ss_pred cccceeeecCCccccHHHHHHHhccc----CcccceeeecccchhhhccccccceeeehhhhhHHHHH
Confidence 46789999999999999999999999 889999987654 34566779999999999999885
No 159
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.02 Score=59.67 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=58.5
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs-~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
..+|||||+||--+|.++|..+|. -||.|.-+-|=+|+ .-+-| +|-|-|.|.+..+-.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~--k~KYP---------------kGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP--KLKYP---------------KGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc--ccCCC---------------CCcceeeecccHHHHHHHh
Confidence 468999999999999999999999 69999888773332 22334 4889999999999999984
Q ss_pred -----ccCceeeeeeeEEecC
Q 015821 303 -----FNMAVIGGNHIRLDRA 318 (399)
Q Consensus 303 -----lng~~l~Gr~I~V~~a 318 (399)
++...|.- +|.|...
T Consensus 432 arFvql~h~d~~K-RVEIkPY 451 (520)
T KOG0129|consen 432 ARFVQLDHTDIDK-RVEIKPY 451 (520)
T ss_pred hheEEEeccccce-eeeecce
Confidence 44444443 5555554
No 160
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.51 E-value=0.015 Score=55.81 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=68.8
Q ss_pred HHHHH-HccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeec
Q 015821 297 TEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH 375 (399)
Q Consensus 297 A~~Al-~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d 375 (399)
|..|- +|++....|+.++|.++.. ..|||.||..-+..+.|.+-|+.| |.|...-+..|
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~----------------a~l~V~nl~~~~sndll~~~f~~f----g~~e~av~~vD 66 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH----------------AELYVVNLMQGASNDLLEQAFRRF----GPIERAVAKVD 66 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc----------------ceEEEEecchhhhhHHHHHhhhhc----Cccchheeeec
Confidence 34444 6999999999999999852 579999999999999999999999 88887777777
Q ss_pred CCCCCCccEEEEEecCHHHHHhh
Q 015821 376 PHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 376 ~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
. -+.+.+-++|.|.....|..|
T Consensus 67 ~-r~k~t~eg~v~~~~k~~a~~a 88 (275)
T KOG0115|consen 67 D-RGKPTREGIVEFAKKPNARKA 88 (275)
T ss_pred c-cccccccchhhhhcchhHHHH
Confidence 4 488999999999998877766
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.33 E-value=0.016 Score=58.00 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=55.0
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeE--------EEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~--------~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....+|||.+||..++.++|..+|.+| |.|. .|.|.++..|+.++|-|.|+|.+...|++||
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qc----g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai 133 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQC----GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAI 133 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhc----ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhh
Confidence 345799999999999999999999999 5553 4678888899999999999999999999986
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.03 Score=58.94 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=56.3
Q ss_pred cCEEEEecCCCCC------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 225 LRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 225 ~rtVfVgNLP~~v------Tee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
...|+|-|+|.-- -..-|..+|+++|+|+.+.++-++ . |..+||.|++|.+..+|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e---~---------------ggtkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE---E---------------GGTKGYLFVEYASMRDAK 119 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc---c---------------CCeeeEEEEEecChhhHH
Confidence 4679999998642 235677899999999888775443 1 224699999999999999
Q ss_pred HHH-HccCceeeee-eeEEec
Q 015821 299 AAL-AFNMAVIGGN-HIRLDR 317 (399)
Q Consensus 299 ~Al-~lng~~l~Gr-~I~V~~ 317 (399)
.|+ .|||..|+-+ ...|..
T Consensus 120 ~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 120 KAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred HHHHhcccceecccceEEeeh
Confidence 999 6999988643 444433
No 163
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.31 E-value=0.039 Score=53.98 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=51.9
Q ss_pred HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccCceeeeeeeEEec
Q 015821 239 KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (399)
Q Consensus 239 ee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~ 317 (399)
++++.+.+.+||.|..|.|..+|....... --.||+|...++|.+|+ .|||..|+||.++.++
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~dea----------------vRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEA----------------VRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchh----------------heeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 457788899999999999877763222111 24899999999999998 8999999999998877
Q ss_pred CC
Q 015821 318 AC 319 (399)
Q Consensus 318 a~ 319 (399)
..
T Consensus 364 yn 365 (378)
T KOG1996|consen 364 YN 365 (378)
T ss_pred cc
Confidence 64
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.24 E-value=0.042 Score=48.83 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=51.7
Q ss_pred CcCEEEEecCCC-----CCcH----HHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCH
Q 015821 224 LLRTIFVGNLPL-----KVKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE 294 (399)
Q Consensus 224 ~~rtVfVgNLP~-----~vTe----e~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~ 294 (399)
...||.|.=+.+ .... .+|...|..||.|.-||+.. +.-+|+|.+.
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-------------------------~~mwVTF~dg 80 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-------------------------DTMWVTFRDG 80 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-------------------------TCEEEEESSC
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-------------------------CeEEEEECcc
Confidence 345677765551 1223 37778899999887776622 5689999999
Q ss_pred HHHHHHHHccCceeeeeeeEEecCCC
Q 015821 295 QSTEAALAFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 295 e~A~~Al~lng~~l~Gr~I~V~~a~~ 320 (399)
++|-+|+.++|..+.|+.|.|..-.+
T Consensus 81 ~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 81 QSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHccCCcEECCEEEEEEeCCc
Confidence 99999999999999999999988543
No 165
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.08 E-value=0.023 Score=62.62 Aligned_cols=76 Identities=30% Similarity=0.422 Sum_probs=63.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...+.+||++|++++....|...|..||+|..|.+. -+. -||||+|.+...++.|+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq-----------------~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQ-----------------PYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCC-----------------cceeeecccCccchhhHH
Confidence 345679999999999999999999999999988771 111 49999999999999999
Q ss_pred HccCceeee--eeeEEecCCCC
Q 015821 302 AFNMAVIGG--NHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~G--r~I~V~~a~~~ 321 (399)
.+-|..|+| +.|+|.++.++
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HHhcCcCCCCCcccccccccCC
Confidence 588888865 66999998654
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.05 E-value=0.059 Score=55.14 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=50.6
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeec---CCC--CCC--------ccEEEEEecCHHHHHhh
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH---PHM--RVG--------KGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d---~~t--g~~--------kG~AFV~F~s~e~A~~A 398 (399)
++++|.+.|||.+-.-+.|..+|+.| |.|..|||... +.. |.+ +-+|+|+|...+.|.+|
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~----G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTV----GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcc----cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 67999999999999999999999999 99999999876 322 222 44689999999999877
No 167
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.86 E-value=0.017 Score=61.16 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=60.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs-~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
..++.|||.||=.-.|.-+|+.++. .+|.|++.+| +.+ +.+|||.|.+.++|.+-.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI---------------------KShCyV~yss~eEA~atr 498 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI---------------------KSHCYVSYSSVEEAAATR 498 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh---------------------hcceeEecccHHHHHHHH
Confidence 4568899999999999999999999 6888877754 221 358999999999998877
Q ss_pred -HccCcee---eeeeeEEecCC
Q 015821 302 -AFNMAVI---GGNHIRLDRAC 319 (399)
Q Consensus 302 -~lng~~l---~Gr~I~V~~a~ 319 (399)
+|||..| +++.|.+.+..
T Consensus 499 ~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 499 EALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred HHHhccccCCCCCceeEeeecc
Confidence 7999987 56788888763
No 168
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.61 E-value=0.04 Score=50.60 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=43.1
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcc-cCCeeEEEEee--ecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRIRS--VPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~-~G~I~~I~i~~--~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
...|.|++||+.+|++++++.++. ++....-.... .+......+ ...-|||.|.+.+++....
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~--------------~~SRaYi~F~~~~~~~~F~ 72 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPP--------------TYSRAYINFKNPEDLLEFR 72 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS----------------EEEEEEESSCHHHHHHH
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCC--------------cceEEEEEeCCHHHHHHHH
Confidence 567999999999999999998776 66542111111 111111111 1357999999999988877
Q ss_pred -HccCceeee
Q 015821 302 -AFNMAVIGG 310 (399)
Q Consensus 302 -~lng~~l~G 310 (399)
.++|+.|.+
T Consensus 73 ~~~~g~~F~D 82 (176)
T PF03467_consen 73 DRFDGHVFVD 82 (176)
T ss_dssp HHCTTEEEE-
T ss_pred HhcCCcEEEC
Confidence 689988743
No 169
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.44 E-value=0.17 Score=40.90 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=39.6
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
+...+..||+ .|..+...||..+|+.||.|. |.++.+ .-|||...+.+.|..++
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------------------------TSAfV~l~~r~~~~~v~ 59 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------------------------TSAFVALHNRDQAKVVM 59 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------------------------TEEEEEECCCHHHHHHH
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------------------------CcEEEEeecHHHHHHHH
Confidence 3445666776 999999999999999999974 555332 36999999999999887
Q ss_pred H
Q 015821 302 A 302 (399)
Q Consensus 302 ~ 302 (399)
.
T Consensus 60 ~ 60 (87)
T PF08675_consen 60 N 60 (87)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.43 E-value=0.017 Score=57.55 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=50.6
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHh
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWE 397 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~ 397 (399)
...++||+||-|-+|++||.+.+...+. ..+..+.++-+..+|.++|||+|...+..+..+
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~--~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq 139 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGL--AQFADMKFFENRTNGQSKGYALLVLNSDAAVKQ 139 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhH--HHHhhhhhhhcccCCcccceEEEEecchHHHHH
Confidence 3478999999999999999999877643 467788888888899999999999987665543
No 171
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=94.38 E-value=0.1 Score=42.23 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=33.8
Q ss_pred cceeecCCCCCCCHHH----HHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEE----IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teed----L~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..|||.|||.+.+... |++++..|| |.|..|. .+.|+|.|.+.+.|.+|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG---GkVl~v~----------~~tAilrF~~~~~A~RA~ 56 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG---GKVLSVS----------GGTAILRFPNQEFAERAQ 56 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT-----EEE------------TT-EEEEESSHHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC---CEEEEEe----------CCEEEEEeCCHHHHHHHH
Confidence 4689999999988665 456777885 8888762 357999999999999883
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.53 E-value=0.032 Score=53.62 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=48.6
Q ss_pred HHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccCceeeeeeeEEec
Q 015821 240 KTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (399)
Q Consensus 240 e~L~~~Fs-~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~ 317 (399)
++|...|. +||+|+++.|...- .. --.|-+||.|...++|++|+ .||+..|.|++|.+.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl----~~--------------hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL----GD--------------HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc----ch--------------hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 56666667 89999988663311 11 12488999999999999999 6999999999999988
Q ss_pred CC
Q 015821 318 AC 319 (399)
Q Consensus 318 a~ 319 (399)
+.
T Consensus 145 ~p 146 (260)
T KOG2202|consen 145 SP 146 (260)
T ss_pred cC
Confidence 64
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.22 E-value=0.07 Score=53.36 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=57.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCe--eEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEI--DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I--~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
.-.+|||||-|++|+++|.+.+...|.- .++++ ..+..+|.++|||+|...+..++.+-+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKF-----------------FENR~NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKF-----------------FENRTNGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhh-----------------hhcccCCcccceEEEEecchHHHHHHHH
Confidence 4569999999999999999999887742 22322 1122357889999999999999988885
Q ss_pred -ccCceeeeeeeEEecC
Q 015821 303 -FNMAVIGGNHIRLDRA 318 (399)
Q Consensus 303 -lng~~l~Gr~I~V~~a 318 (399)
|-...|.|+.-.|...
T Consensus 143 iLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 143 ILPTKTIHGQSPTVLSY 159 (498)
T ss_pred hcccceecCCCCeeecc
Confidence 6777888877555443
No 174
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.67 E-value=0.079 Score=54.87 Aligned_cols=75 Identities=24% Similarity=0.365 Sum_probs=61.5
Q ss_pred CCcCEEEEecCCCCC-cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKV-KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~v-Tee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
.+.+.|-+.-.|+.. |-++|..+|.+||.|..|.+...+ -.|.|+|.+..+|-.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----------------------~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----------------------LHAVVTFKTRAEAGEAY 426 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-----------------------hhheeeeeccccccchh
Confidence 345566666677765 578999999999999999883321 26999999999998899
Q ss_pred HccCceeeeeeeEEecCCC
Q 015821 302 AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~ 320 (399)
..++..|++|.|.|-|..+
T Consensus 427 ~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 427 ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccccceecCceeEEEEecC
Confidence 9999999999999999875
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.56 E-value=0.84 Score=34.81 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=40.6
Q ss_pred CEEEEecCCCCCcHHHHHHHhccc----CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~----G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
..|+|+|+. +++.++|..+|..| ++ ..|.++-+. -|-|.|.+.+.|..||
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt------------------------ScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT------------------------SCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC------------------------cEEEEECCHHHHHHHH
Confidence 459999994 58889999999998 54 457664432 4889999999999998
Q ss_pred H
Q 015821 302 A 302 (399)
Q Consensus 302 ~ 302 (399)
.
T Consensus 60 ~ 60 (62)
T PF10309_consen 60 V 60 (62)
T ss_pred H
Confidence 3
No 176
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=90.74 E-value=0.17 Score=51.41 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=47.3
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCC---CCCCccEEEEEecCHHHHHhh
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~---tg~~kG~AFV~F~s~e~A~~A 398 (399)
..|.|.||.++++.++++.||... |.|..++|+.... .......|||-|.+...+..|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~l----GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va 68 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNL----GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA 68 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhc----cccccccccCCCCCccCcceeeeEEEeccCCcceeHH
Confidence 489999999999999999999988 9999999877432 234556899999987766544
No 177
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.36 E-value=0.56 Score=41.67 Aligned_cols=71 Identities=25% Similarity=0.264 Sum_probs=52.3
Q ss_pred cCEEEEecCCCCC----cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 225 LRTIFVGNLPLKV----KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 225 ~rtVfVgNLP~~v----Tee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
-.||.|+=|...+ +-..|...++.||+|.+|.+. | +--|.|.|.+..+|-.|
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------G-----------------rqsavVvF~d~~SAC~A 141 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------G-----------------RQSAVVVFKDITSACKA 141 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------C-----------------CceEEEEehhhHHHHHH
Confidence 4678787665554 445666677889999999872 2 23699999999999999
Q ss_pred HHccCceeeeeeeEEecCC
Q 015821 301 LAFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~ 319 (399)
+..-+....|..+.+.|-.
T Consensus 142 v~Af~s~~pgtm~qCsWqq 160 (166)
T PF15023_consen 142 VSAFQSRAPGTMFQCSWQQ 160 (166)
T ss_pred HHhhcCCCCCceEEeeccc
Confidence 9544446778888888753
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=90.22 E-value=0.58 Score=39.08 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=39.0
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEE-EeecC------CCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR-VIRHP------HMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~Vr-I~~d~------~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.|.|-+.|+. .-..|.+.|++| |.|.... +.++. ..........|+|.++.+|.+||
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL 71 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSF----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL 71 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCC----S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhc----ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH
Confidence 3467888899988 556788999999 8888764 11110 00123458899999999999996
No 179
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=90.20 E-value=0.43 Score=50.60 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=47.7
Q ss_pred ccceeecCCCCCCC------HHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVK------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~t------eedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...|+|.|+|.--. ..-|..+|+.+ |.|..+.++.+.. |..+||.|++|++..+|..|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~----gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aV 122 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKA----GKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAV 122 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhh----ccccceeeccCcc-CCeeeEEEEEecChhhHHHHH
Confidence 36788888875322 23456889999 9999999999977 559999999999999998874
No 180
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.31 E-value=0.28 Score=39.99 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=44.9
Q ss_pred EEEeeCCHHHHHHHHHccCc--eeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhh
Q 015821 287 AYIVFKSEQSTEAALAFNMA--VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFC 358 (399)
Q Consensus 287 AFV~F~s~e~A~~Al~lng~--~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs 358 (399)
|+|+|..+.-|+.-+.+..+ .+.+..+.|....-.......-........++|.|.|||..+.+++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999998864444 4555555554431110000000011133568999999999999999987654
No 181
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.13 E-value=1.5 Score=43.38 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=53.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
..-|-|-++|+..+- -|..+|++||.|+..... +.| -+-+|.|.+.-+|++||..|
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~----------~ng-------------NwMhirYssr~~A~KALskn 252 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP----------SNG-------------NWMHIRYSSRTHAQKALSKN 252 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC----------CCC-------------ceEEEEecchhHHHHhhhhc
Confidence 455777788887553 567899999999776431 112 38899999999999999999
Q ss_pred Cceeeeee-eEEecCC
Q 015821 305 MAVIGGNH-IRLDRAC 319 (399)
Q Consensus 305 g~~l~Gr~-I~V~~a~ 319 (399)
|..|.|.. |-|..+.
T Consensus 253 g~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 253 GTIIDGDVMIGVKPCT 268 (350)
T ss_pred CeeeccceEEeeeecC
Confidence 99998755 5566544
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.13 E-value=1.6 Score=33.35 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=42.1
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..|+|+|+. +++-++|..+|..|-.. .....|.++-|. -|-|.|.+.+.|.+||
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~-~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDE-EGPFRIEWIDDT-------SCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhccc-CCCceEEEecCC-------cEEEEECCHHHHHHHH
Confidence 689999995 47888999999887111 235677777774 3889999999999986
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.97 E-value=1.4 Score=35.62 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=35.2
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
...||. +|..+...||.++|+.| |.| .|..+-|. -|||....++.|..|
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspf----G~I-~VsWi~dT-------SAfV~l~~r~~~~~v 58 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPF----GQI-YVSWINDT-------SAFVALHNRDQAKVV 58 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCC----CCE-EEEEECTT-------EEEEEECCCHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccC----CcE-EEEEEcCC-------cEEEEeecHHHHHHH
Confidence 455666 99999999999999999 655 46666553 699999999888765
No 184
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.42 E-value=0.31 Score=48.60 Aligned_cols=82 Identities=16% Similarity=0.359 Sum_probs=59.7
Q ss_pred cCEEEEecCCCCCcHHHHH---HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 225 LRTIFVGNLPLKVKKKTLI---KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~---~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
.+-+||-+||..+-.+.+. ++|.+||.|..|.+...+.. ... .. ...-+||+|...++|..||
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~---~s~---------~~--~~~s~yITy~~~eda~rci 142 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSS---SSS---------SG--GTCSVYITYEEEEDADRCI 142 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCccc---ccC---------CC--CCCcccccccchHhhhhHH
Confidence 3568999999887666665 48999999999988554410 000 00 1123899999999999999
Q ss_pred -HccCceeeeeeeEEecCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~ 320 (399)
..+|..+.|+.+.......
T Consensus 143 ~~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 143 DDVDGFVDDGRALKASLGTT 162 (327)
T ss_pred HHhhhHHhhhhhhHHhhCCC
Confidence 6899999998877766543
No 185
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.55 E-value=0.11 Score=55.75 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=85.4
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..-+|||+|+...+..+-+..+...||.|-++.. + -|||+.|..+.....|+ .
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr--~------------------------~fgf~~f~~~~~~~ra~r~ 92 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR--D------------------------KFGFCEFLKHIGDLRASRL 92 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhh--h------------------------hhcccchhhHHHHHHHHHH
Confidence 3568999999999999999999999998865432 1 28999999999998888 4
Q ss_pred ccCceeeeeeeEEecCCC----CccCC------CCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEE
Q 015821 303 FNMAVIGGNHIRLDRACP----PRKKL------KGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRV 372 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~----~~k~~------~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI 372 (399)
++...++|..+.+..-.. +.+.. ...-.+ ....+.++|.|+|...........|.-- +.....+-
T Consensus 93 ~t~~~~~~~kl~~~~d~q~~~n~~k~~~~~~~~~~~f~p-~~srr~e~i~~k~~~l~~~~~~~~~~is----~s~~s~~~ 167 (668)
T KOG2253|consen 93 LTELNIDDQKLIENVDEQTIENADKEKSIANKESHKFVP-SSSRRQESIQNKPLSLDEQIHKKSLQIS----SSAASRRQ 167 (668)
T ss_pred hcccCCCcchhhccchhhhhcCccccccchhhhhcccCC-chhHHHHHhhccccchhHHHHHHHHhcc----chhhhhhh
Confidence 666667777766544210 00000 000011 1125678889998888777777766544 34444443
Q ss_pred eecCCCCCCccEEEEEecC
Q 015821 373 IRHPHMRVGKGIAYVLFKT 391 (399)
Q Consensus 373 ~~d~~tg~~kG~AFV~F~s 391 (399)
+.... ++..-++|-.|.+
T Consensus 168 ~~e~d-~h~~e~~~~~~~s 185 (668)
T KOG2253|consen 168 IAEAD-DHCLELEKTETES 185 (668)
T ss_pred hHHHH-HHHHHHHHhhccc
Confidence 33322 3444444444443
No 186
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=85.58 E-value=0.56 Score=45.29 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=44.5
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCC--------CCCcc----EEEEEecCHHHHHh
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM--------RVGKG----IAYVLFKTRDEEWE 397 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~t--------g~~kG----~AFV~F~s~e~A~~ 397 (399)
...||++++|+.+...-|+++|+.| |.|-.|.|-....+ |.+.+ -|.|+|.+...|.+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~y----GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~ 143 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQY----GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKR 143 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhc----cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHH
Confidence 3689999999999999999999999 99999988776544 33333 24577776665544
No 187
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=85.16 E-value=0.99 Score=43.64 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=47.3
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
..|||.||+.-++-+.|...|+.||+|....+..+. . ++..|-++|.|...-.+.+|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~---r---------------~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD---R---------------GKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc---c---------------ccccccchhhhhcchhHHHHHH
Confidence 459999999999999999999999999765543332 1 2334778999999999998884
No 188
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.55 E-value=6.5 Score=40.96 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=55.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~-G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
.+.|+|-.+|..+|--||..|+..| -.|..|+|++++.. ++-.++|.|.+.++|.... .
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 7889999999999999999999864 56789999885431 2346899999999999998 6
Q ss_pred ccCceee
Q 015821 303 FNMAVIG 309 (399)
Q Consensus 303 lng~~l~ 309 (399)
+||..|.
T Consensus 135 fNGk~Fn 141 (493)
T KOG0804|consen 135 FNGKQFN 141 (493)
T ss_pred cCCCcCC
Confidence 9999874
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=81.25 E-value=1.3 Score=40.65 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=33.3
Q ss_pred ccceeecCCCCCCCHHHHHHHhhc-cCCCCCCe---EEEEEeecC--CCCCCccEEEEEecCHHHHH
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCG-LNDLESSV---EAVRVIRHP--HMRVGKGIAYVLFKTRDEEW 396 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~-f~~~~G~I---~~VrI~~d~--~tg~~kG~AFV~F~s~e~A~ 396 (399)
...|.|++||+++|++++.+.++. + +.. .++.-.... .....-.-|||.|.+.+++.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l----~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~ 69 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWL----PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLL 69 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS------SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHH
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhc----ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHH
Confidence 468999999999999999887776 4 333 233311221 11123346899999987753
No 190
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=81.00 E-value=1.9 Score=37.59 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=60.6
Q ss_pred eeEEEeeCCHHHHHHHHHccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCC-CCHHHHHHHhhccCCC
Q 015821 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDL 363 (399)
Q Consensus 285 G~AFV~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~-~teedL~~~Fs~f~~~ 363 (399)
|+..+.|.+.+++..++......+.|..|.+....+...... ........-|.|.|||.. .+++-|..+-+.+
T Consensus 56 ~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~---~~~~~~~vWVri~glP~~~~~~~~~~~i~~~i--- 129 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSE---VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKI--- 129 (153)
T ss_pred CeEEEEEEeccceeEEEecccccccccchhhhhhcccccccc---cceeccchhhhhccCCHHHhhhHHHHHHHHhc---
Confidence 789999999999999988877888898888888764321110 011112345777899987 5677788888888
Q ss_pred CCCeEEEEEeec
Q 015821 364 ESSVEAVRVIRH 375 (399)
Q Consensus 364 ~G~I~~VrI~~d 375 (399)
|.+..+.....
T Consensus 130 -G~~i~vD~~t~ 140 (153)
T PF14111_consen 130 -GEPIEVDENTL 140 (153)
T ss_pred -CCeEEEEcCCC
Confidence 88888876443
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=80.85 E-value=15 Score=31.25 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=42.5
Q ss_pred EEEEecCCCCCcHHHHHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hcc
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~-G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ln 304 (399)
.+-+...|+-++-+.|..+.+.+ ..|..++|+++.. .++--+++.|.+..+|.... .+|
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-------------------pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-------------------PNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-------------------CceEEEEEEECCHHHHHHHHHHhC
Confidence 34444444455556666555554 4567788866431 13457999999999999988 699
Q ss_pred Cceee
Q 015821 305 MAVIG 309 (399)
Q Consensus 305 g~~l~ 309 (399)
|..|.
T Consensus 76 Gk~Fn 80 (110)
T PF07576_consen 76 GKPFN 80 (110)
T ss_pred CCccC
Confidence 98774
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.75 E-value=2.8 Score=38.78 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=41.9
Q ss_pred cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hcc--CceeeeeeeE
Q 015821 238 KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN--MAVIGGNHIR 314 (399)
Q Consensus 238 Tee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ln--g~~l~Gr~I~ 314 (399)
....|..+|..|+.+..+.++. +-+-..|.|.+.++|..|. .|+ +..+.|..|+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----------------------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----------------------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----------------------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----------------------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 3578999999999987765522 1245899999999999998 578 8899999999
Q ss_pred EecCCC
Q 015821 315 LDRACP 320 (399)
Q Consensus 315 V~~a~~ 320 (399)
|.++..
T Consensus 65 ~yf~~~ 70 (184)
T PF04847_consen 65 VYFGQP 70 (184)
T ss_dssp EE----
T ss_pred EEEccc
Confidence 998853
No 193
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=80.22 E-value=2.2 Score=42.89 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=43.7
Q ss_pred ccceeecCCCCCCCHHHH------HHHhhccCCCCCCeEEEEEeecCCC-CCCcc-E-EEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEI------YQLFCGLNDLESSVEAVRVIRHPHM-RVGKG-I-AYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL------~~~Fs~f~~~~G~I~~VrI~~d~~t-g~~kG-~-AFV~F~s~e~A~~AL 399 (399)
.+-+||-+||+.+..+++ .++|.+| |.|..|-|-+...+ +..-+ + .||+|.+.++|.+||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQy----GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcI 182 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQY----GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCI 182 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhc----cceeEEEecccccccccccccceEEEEecchHHHHHHH
Confidence 467899999998887763 5889999 99998877554311 11112 2 399999999999886
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=79.03 E-value=12 Score=31.82 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=43.5
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHh
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWE 397 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~ 397 (399)
....+.+...|.-++.++|..+.+.+. ..|..++|++|. ..++-.+.+.|.+...|..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~---~~i~~~riird~--~pnrymVLikF~~~~~Ad~ 69 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFR---EDIEHIRIIRDG--TPNRYMVLIKFRDQESADE 69 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhccc---ccEEEEEEeeCC--CCceEEEEEEECCHHHHHH
Confidence 345556666677777778877777763 578999999984 3478889999999998864
No 195
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=78.52 E-value=24 Score=35.01 Aligned_cols=166 Identities=12% Similarity=0.191 Sum_probs=95.6
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
+....|.|.+.||..+++--.+...|.+||+|++|.+..... .+.. +.+.-.......+-|-+.+.+-..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~----~~~d------~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSND----KPSD------DYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCC----cccc------cccccccceEEEEeeechHHHHHH
Confidence 344568899999999999999999999999999999954331 1110 112223345688999998876543
Q ss_pred H-----Hcc--CceeeeeeeEEecCCCCccCCC--CC---------------CCCccCcccceeecCCCCCCCHHHH-HH
Q 015821 301 L-----AFN--MAVIGGNHIRLDRACPPRKKLK--GE---------------DAPLYDIKKTVFVGNLPFDVKDEEI-YQ 355 (399)
Q Consensus 301 l-----~ln--g~~l~Gr~I~V~~a~~~~k~~~--~~---------------~~~~~~~~~tLfV~NLp~~~teedL-~~ 355 (399)
. .|. .+.+....|.|.+..-...... .+ ..-.....+.|.|.= ...+..+++ ..
T Consensus 81 YNnvLQrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~ 159 (309)
T PF10567_consen 81 YNNVLQRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEK 159 (309)
T ss_pred HHHHHHHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHH
Confidence 2 121 2234555666666542111100 00 001133567777752 233433333 22
Q ss_pred HhhccCCCCC----CeEEEEEeecC--CCCCCccEEEEEecCHHHHHhh
Q 015821 356 LFCGLNDLES----SVEAVRVIRHP--HMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 356 ~Fs~f~~~~G----~I~~VrI~~d~--~tg~~kG~AFV~F~s~e~A~~A 398 (399)
.+ +|-...+ .+++|.|+.-. ...-+..||.++|-+...|..+
T Consensus 160 kL-~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV 207 (309)
T PF10567_consen 160 KL-PFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEV 207 (309)
T ss_pred hh-hhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHH
Confidence 22 1110012 36778887643 3345778999999998877654
No 196
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=75.78 E-value=1.3 Score=47.41 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=44.9
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHh
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWE 397 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~ 397 (399)
...++.|||.||-.-+|.-+|+.++..- +|.|... .+|. -+.-|||.|.+.++|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rt---gg~Vee~--WmDk----IKShCyV~yss~eEA~a 496 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRT---GGNVEEF--WMDK----IKSHCYVSYSSVEEAAA 496 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhc---cCchHHH--HHHH----hhcceeEecccHHHHHH
Confidence 4567999999999999999999999853 2777766 4443 35579999999998865
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=72.68 E-value=22 Score=27.35 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=42.0
Q ss_pred CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccCceeeeeeeE
Q 015821 236 KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIR 314 (399)
Q Consensus 236 ~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~ 314 (399)
.++-++|+..+..|+- ..|+. +. .| -||.|.+..+|+.|. ..+|..+.+..|.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~----------------------tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR----------------------TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC----------------------CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5778899999999985 23433 22 24 489999999999999 6899988888776
Q ss_pred E
Q 015821 315 L 315 (399)
Q Consensus 315 V 315 (399)
+
T Consensus 65 M 65 (66)
T PF11767_consen 65 M 65 (66)
T ss_pred e
Confidence 5
No 198
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.61 E-value=9.8 Score=39.17 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=51.4
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...+.|=|.++|.....++|...|..||.- .++|.++. .-+||-.|.+...|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvD----------------------dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVD----------------------DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcC-CceeEEee----------------------cceeEEeecchHHHHHHhh
Confidence 356889999999999999999999999753 34443332 1379999999999999998
Q ss_pred ccCceeeeeee
Q 015821 303 FNMAVIGGNHI 313 (399)
Q Consensus 303 lng~~l~Gr~I 313 (399)
+....+.-|.|
T Consensus 446 ~kh~~lKiRpL 456 (528)
T KOG4483|consen 446 LKHDWLKIRPL 456 (528)
T ss_pred ccCceEEeeeh
Confidence 75555554443
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=70.51 E-value=2.5 Score=46.97 Aligned_cols=73 Identities=21% Similarity=0.159 Sum_probs=59.1
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
...+.++-|.+-..|--.|..+|++||.|.+++.+++- -.|.|.|.+.++|..|+ +
T Consensus 297 lqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----------------------N~alvs~~s~~sai~a~dA 353 (1007)
T KOG4574|consen 297 LQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----------------------NMALVSFSSVESAILALDA 353 (1007)
T ss_pred CcchhhhhcccccchHHHHHHHHHhhcchhhheecccc-----------------------cchhhhhHHHHHHHHhhhh
Confidence 34456666777788889999999999999999875532 37999999999999999 7
Q ss_pred ccCcee--eeeeeEEecCC
Q 015821 303 FNMAVI--GGNHIRLDRAC 319 (399)
Q Consensus 303 lng~~l--~Gr~I~V~~a~ 319 (399)
++|..+ -|-+.+|.++.
T Consensus 354 l~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 354 LQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hcCCcccccCCceeEEecc
Confidence 888864 67778888875
No 200
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=66.21 E-value=11 Score=40.44 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=50.9
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcc--cCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIK--FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~--~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
...+.|.|+-||..+-.++|+.+|.. |-.+.+|.+-.. --=||+|.+..+|+.|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------------------------~nWyITfesd~DAQqA 228 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------------------------DNWYITFESDTDAQQA 228 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------------------------CceEEEeecchhHHHH
Confidence 34688999999999999999999995 888888877221 1258999999999999
Q ss_pred HH-cc--CceeeeeeeE
Q 015821 301 LA-FN--MAVIGGNHIR 314 (399)
Q Consensus 301 l~-ln--g~~l~Gr~I~ 314 (399)
.. |. -..|.|+.|.
T Consensus 229 ykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 229 YKYLREEVKTFQGKPIM 245 (684)
T ss_pred HHHHHHHHHhhcCcchh
Confidence 73 22 2245565543
No 201
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=65.94 E-value=20 Score=38.53 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=43.0
Q ss_pred cccceeecCCCCCCCHHHHHHHhhc--cCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCG--LNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~--f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
..+.|.|+-||..+..++++.||.. | -.+.+|.+..+. -=||+|.+..+|+.|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~enc----Pk~iscefa~N~-------nWyITfesd~DAQqA 228 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENC----PKVISCEFAHND-------NWYITFESDTDAQQA 228 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCC----CCceeeeeeecC-------ceEEEeecchhHHHH
Confidence 3477889999999999999999964 4 467888875542 149999999999987
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.36 E-value=11 Score=39.48 Aligned_cols=57 Identities=7% Similarity=0.250 Sum_probs=48.7
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHh
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWE 397 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~ 397 (399)
+..|+|-.+|..++-.||..|+..|- -.|..++|+||. -.++-.+.|.|.+..+|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~---~~I~~irivRd~--~pnrymvLIkFr~q~da~~ 130 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI---KQISDIRIVRDG--MPNRYMVLIKFRDQADADT 130 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh---hhhheeEEeecC--CCceEEEEEEeccchhHHH
Confidence 68999999999999999999998773 579999999974 3456688999999988863
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=59.14 E-value=6.8 Score=39.30 Aligned_cols=58 Identities=19% Similarity=0.380 Sum_probs=42.9
Q ss_pred cceeecCCCCCCCHHHHH---HHhhccCCCCCCeEEEEEeecCC----CCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIY---QLFCGLNDLESSVEAVRVIRHPH----MRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~---~~Fs~f~~~~G~I~~VrI~~d~~----tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+-+||-+|+..+..+.+. ++|.+| |.|..|.+.+++. .+.+ .-+||+|...++|..||
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqy----gki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci 142 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQY----GKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCI 142 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccccc----ccceEEeecCCcccccCCCCC-CcccccccchHhhhhHH
Confidence 567888888887776664 566666 9999999988761 1222 23899999999998875
No 204
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=58.02 E-value=17 Score=32.45 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=39.6
Q ss_pred cCcccceeecCCCCCCCH-HHHH---HHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKD-EEIY---QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~te-edL~---~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+-.+|.|+=|..++.. +||+ ..++.| |.|.+|.+. ++.-|.|.|.+..+|..|+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~f----GpI~SVT~c-------GrqsavVvF~d~~SAC~Av 142 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF----GPIQSVTLC-------GRQSAVVVFKDITSACKAV 142 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhc----CCcceeeec-------CCceEEEEehhhHHHHHHH
Confidence 345578888766655532 4554 445667 999999763 2447999999999998874
No 205
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.10 E-value=38 Score=36.62 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=58.5
Q ss_pred CCcCEEEEecCCCC-CcHHHHHHHhccc----CCeeEEEEeeecccCCCCCcc------ch-------------------
Q 015821 223 KLLRTIFVGNLPLK-VKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRK------GA------------------- 272 (399)
Q Consensus 223 ~~~rtVfVgNLP~~-vTee~L~~~Fs~~----G~I~~I~i~~~~~~~~~~~rk------~~------------------- 272 (399)
...+.|-|-||.|+ +..++|.-+|+.| |.|.+|.|..- ..|+.|. |.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS---eFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS---EFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh---hhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34678999999997 6889999999976 58888887322 2222220 00
Q ss_pred ----hhhhhc---c-cCCCceeEEEeeCCHHHHHHHH-HccCceeeeeeeEE
Q 015821 273 ----ILQKQI---N-ENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRL 315 (399)
Q Consensus 273 ----~i~~~~---~-~~~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V 315 (399)
+++..+ . .....-||.|+|.+.+.|.+.. .++|..|......+
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 000001 0 1122358999999999998887 69999886544333
No 206
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=51.82 E-value=31 Score=34.19 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=37.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I-~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e 295 (399)
....-|||+|||.++.-.+|...+.+.|-+ .+|.|. . +.|-||+.|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk--------g---------------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK--------G---------------HFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeee--------c---------------CCcceeEecCCcc
Confidence 344559999999999999999999887644 445441 1 3478999998754
No 207
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=49.53 E-value=3.4 Score=39.98 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=28.7
Q ss_pred CCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 364 ESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 364 ~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
||+|+.+.|-.+.. -+-.|-+||.|...++|++|+
T Consensus 93 ygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~ 127 (260)
T KOG2202|consen 93 YGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAAL 127 (260)
T ss_pred hhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHH
Confidence 49999987766543 567889999999999999885
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=46.81 E-value=11 Score=41.05 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=44.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.++..++||+|+-..+..+-++.+...| |.|.++..+. |||..|..+....+|+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~----g~v~s~kr~~---------fgf~~f~~~~~~~ra~ 90 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKS----GFVPSWKRDK---------FGFCEFLKHIGDLRAS 90 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhC----Ccchhhhhhh---------hcccchhhHHHHHHHH
Confidence 3456899999999999999999999988 8888765432 8999999988776653
No 209
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=46.01 E-value=24 Score=31.51 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=28.3
Q ss_pred HHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 352 EIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 352 dL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+|.+.|..| |.+.-||++-+ --+|+|.+-.+|.+||
T Consensus 52 ~ll~~~~~~----GevvLvRfv~~--------~mwVTF~dg~sALaal 87 (146)
T PF08952_consen 52 ELLQKFAQY----GEVVLVRFVGD--------TMWVTFRDGQSALAAL 87 (146)
T ss_dssp HHHHHHHCC----S-ECEEEEETT--------CEEEEESSCHHHHHHH
T ss_pred HHHHHHHhC----CceEEEEEeCC--------eEEEEECccHHHHHHH
Confidence 566777787 99998888655 3689999999999885
No 210
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=44.45 E-value=25 Score=27.22 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=32.2
Q ss_pred CCcHHHHHHHhcccCCe-----eEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccCceee
Q 015821 236 KVKKKTLIKEFIKFGEI-----DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIG 309 (399)
Q Consensus 236 ~vTee~L~~~Fs~~G~I-----~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng~~l~ 309 (399)
.++..+|..++...+.| -.|+|. .-|+||+-... .+..++ .|++..+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-------------------------~~~S~vev~~~-~a~~v~~~l~~~~~~ 65 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-------------------------DNFSFVEVPEE-VAEKVLEALNGKKIK 65 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE--------------------------SS-EEEEE-TT--HHHHHHHHTT--SS
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-------------------------eeEEEEEECHH-HHHHHHHHhcCCCCC
Confidence 57888999988876544 445551 14899988865 556667 69999999
Q ss_pred eeeeEEecC
Q 015821 310 GNHIRLDRA 318 (399)
Q Consensus 310 Gr~I~V~~a 318 (399)
|+.|.|..+
T Consensus 66 gk~v~ve~A 74 (74)
T PF03880_consen 66 GKKVRVERA 74 (74)
T ss_dssp S----EEE-
T ss_pred CeeEEEEEC
Confidence 999999764
No 211
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=39.76 E-value=45 Score=33.21 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=39.4
Q ss_pred cceeecCC--CCCCC---HHHHHHHhhccCCCCCCeEEEEEeecCCCCCCc-cEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNL--PFDVK---DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK-GIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NL--p~~~t---eedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~k-G~AFV~F~s~e~A~~AL 399 (399)
+.|.++|+ +-.+. ++++.+-+..| |.|..|.|+-++..-... ---||+|...++|.+|+
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKy----g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~ 346 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKY----GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAV 346 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhh----cceeeEEEEecCCCccchhheeeeeeccHHHHHHHH
Confidence 44555554 22333 34667788888 999999888776322222 23699999999999885
No 212
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=38.68 E-value=15 Score=37.84 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=50.7
Q ss_pred cccceeecCCCCCCCHH--------HHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDE--------EIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~tee--------dL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.+|+.+++.....+ ++..+|..++. |.+..|+.-++.....++|..|++|.....|++.+
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h--~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYH--APPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCccc--CChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 34778888887766555 99999988321 78899999998867889999999999999988753
No 213
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.59 E-value=37 Score=32.72 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.0
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEE
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRI 257 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i 257 (399)
.....++|+-|+|...|++.|..+.+++|-+..+.+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 344678999999999999999999999997655543
No 214
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.62 E-value=27 Score=34.48 Aligned_cols=33 Identities=39% Similarity=0.572 Sum_probs=27.0
Q ss_pred CEEEEecCCCCC------------cHHHHHHHhcccCCeeEEEEe
Q 015821 226 RTIFVGNLPLKV------------KKKTLIKEFIKFGEIDSVRIR 258 (399)
Q Consensus 226 rtVfVgNLP~~v------------Tee~L~~~Fs~~G~I~~I~i~ 258 (399)
.|||+.+||-.+ ++.-|+..|..||.|..|.|+
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 579999998653 577899999999999887764
No 215
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.46 E-value=50 Score=34.22 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=43.2
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
-...|-|.++|.....+||...|+.|+. .=..|.++-|. .||..|.+...|..||
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~---kgfdIkWvDdt-------halaVFss~~~AaeaL 444 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQN---KGFDIKWVDDT-------HALAVFSSVNRAAEAL 444 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhc---CCceeEEeecc-------eeEEeecchHHHHHHh
Confidence 3468899999999999999999999953 34455565554 5899999988887775
No 216
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=35.07 E-value=69 Score=32.04 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=39.9
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..-|-|-++|+.- -.-|..+|+.| |.|...... ..-.+-+|.|.++-+|.+||
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~c----G~Vvkhv~~------~ngNwMhirYssr~~A~KAL 249 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRC----GEVVKHVTP------SNGNWMHIRYSSRTHAQKAL 249 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhh----CeeeeeecC------CCCceEEEEecchhHHHHhh
Confidence 3556677887754 35678899999 888876443 23348899999999999997
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.58 E-value=42 Score=33.28 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=35.7
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHH
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRD 393 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e 393 (399)
..-|||+||+.++...||...+... | ..-.+|... .+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~----~-~~pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKR----E-CTPMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhc----C-CCceeEeee----cCCcceeEecCCcc
Confidence 4569999999999999999998775 2 223333322 35778999998753
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.71 E-value=51 Score=35.64 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=36.6
Q ss_pred cCcccceeecCCCCC-CCHHHHHHHhhccCCCCCCeEEEEEeec
Q 015821 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRH 375 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~-~teedL~~~Fs~f~~~~G~I~~VrI~~d 375 (399)
...+++|-|-||.|. +...||.-+|..|-+..|.|.+|.|...
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 446789999999987 6779999999999887789999998764
No 219
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=30.25 E-value=68 Score=32.93 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=46.3
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
...|.|.+||+..|+.+|.+....|-. .+.+......+.+ .. ..-.+.|||.|..++++.... .+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~--~v~~~~F~~a~~s--~~----------~~~ysrayinFk~~~dv~ef~~~f 72 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPE--HVNWEFFAKADES--LR----------NHKYSRAYINFKNPEDVEEFRRRF 72 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCcc--ccchheecccccc--ch----------hhhhhhhhhccccHHHHHHHHhhC
Confidence 466999999999999999988877542 2333221100111 10 111478999999999977766 47
Q ss_pred cCceee
Q 015821 304 NMAVIG 309 (399)
Q Consensus 304 ng~~l~ 309 (399)
+|+.|.
T Consensus 73 ~g~ifl 78 (376)
T KOG1295|consen 73 DGYIFL 78 (376)
T ss_pred CceEEe
Confidence 777663
No 220
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.30 E-value=70 Score=34.06 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=45.5
Q ss_pred EEEecCCCCCc---HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcee-EEEeeCCHHHHHHHHHc
Q 015821 228 IFVGNLPLKVK---KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAALAF 303 (399)
Q Consensus 228 VfVgNLP~~vT---ee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~-AFV~F~s~e~A~~Al~l 303 (399)
=+||||+.-.. ...+..+-.+||+|-.+++ |. -.|.-.+.+.|..|+..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l---------------------------G~~~~Vviss~~~akE~l~~ 87 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL---------------------------GSVPVVVISSYEAAKEVLVK 87 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEe---------------------------cCceEEEECCHHHHHHHHHh
Confidence 46888876433 3555566668999998887 32 47889999999999988
Q ss_pred cCceeeeeee
Q 015821 304 NMAVIGGNHI 313 (399)
Q Consensus 304 ng~~l~Gr~I 313 (399)
++..+.+|+.
T Consensus 88 ~d~~fa~Rp~ 97 (489)
T KOG0156|consen 88 QDLEFADRPD 97 (489)
T ss_pred CCccccCCCC
Confidence 8999988885
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.15 E-value=68 Score=27.39 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=29.9
Q ss_pred EEEEecCCCC---------CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHH-
Q 015821 227 TIFVGNLPLK---------VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS- 296 (399)
Q Consensus 227 tVfVgNLP~~---------vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~- 296 (399)
++.|-|+|.. .+-+.|.+.|+.|.++. ++.+..+ .-+.|++.|.|...-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-------------------~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-------------------QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-------------------TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-------------------CCCcEEEEEEECCChHH
Confidence 3556677553 35689999999999874 5554432 1246999999987544
Q ss_pred HHHHHHcc
Q 015821 297 TEAALAFN 304 (399)
Q Consensus 297 A~~Al~ln 304 (399)
...|+.|+
T Consensus 70 f~~A~~l~ 77 (116)
T PF03468_consen 70 FKNAMRLE 77 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34465543
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.67 E-value=91 Score=30.88 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=35.4
Q ss_pred cccceeecCCCCCC------------CHHHHHHHhhccCCCCCCeEEEEEee-cC----CCCCCccEEEEEe
Q 015821 335 IKKTVFVGNLPFDV------------KDEEIYQLFCGLNDLESSVEAVRVIR-HP----HMRVGKGIAYVLF 389 (399)
Q Consensus 335 ~~~tLfV~NLp~~~------------teedL~~~Fs~f~~~~G~I~~VrI~~-d~----~tg~~kG~AFV~F 389 (399)
...|||+.+||-.| +++-|+..|..| |.|..|.|+. |+ -+|+..|+-|-.|
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eaf----g~ir~vdipicdplr~~mn~kisgiq~~gf 215 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAF----GEIRNVDIPICDPLREEMNGKISGIQFHGF 215 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHh----ccceecCCcccchhHHHhcCccccceeecc
Confidence 34688998888443 567899999999 9999998865 22 3455555444433
No 223
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=24.14 E-value=38 Score=35.72 Aligned_cols=52 Identities=25% Similarity=0.320 Sum_probs=38.1
Q ss_pred ccceeecCCCCCC-CHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHh
Q 015821 336 KKTVFVGNLPFDV-KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWE 397 (399)
Q Consensus 336 ~~tLfV~NLp~~~-teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~ 397 (399)
.+.|-+.-.|+.+ +..+|...|.+| |.|..|.|-.. .--|.|+|.+..+|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~f----G~i~n~qv~~~------~~~a~vTF~t~aeag~ 424 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQF----GEIENIQVDYS------SLHAVVTFKTRAEAGE 424 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhc----CccccccccCc------hhhheeeeeccccccc
Confidence 3455555556655 458999999999 99999987433 3368999999887733
No 224
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=24.00 E-value=33 Score=38.68 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=44.1
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++.|.+-+.+-.-|.-+|+.| |.|.+++.+++-. .|.|.|.+.+.|..|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~y----g~v~s~wtlr~~N------~alvs~~s~~sai~a~ 351 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDY----GSVASAWTLRDLN------MALVSFSSVESAILAL 351 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhh----cchhhheeccccc------chhhhhHHHHHHHHhh
Confidence 345566677788899999999999 9999999988854 7999999999988764
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=23.68 E-value=70 Score=27.32 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=22.2
Q ss_pred CCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecC
Q 015821 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (399)
Q Consensus 348 ~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s 391 (399)
.+...|...|+.|. .+ .|+.+.+. ..+.|++.|.|..
T Consensus 29 ~~~~~l~~~l~~f~----p~-kv~~l~~~--~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 29 MSNEELLDKLAEFN----PL-KVKPLYGK--QGHTGFAIVEFNK 65 (116)
T ss_dssp --SHHHHHHHHH-------S-EEEEEEET--TEEEEEEEEE--S
T ss_pred cCHHHHHHHHHhcC----Cc-eeEECcCC--CCCcEEEEEEECC
Confidence 35578999999993 23 45555554 3578999999976
No 226
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=20.10 E-value=92 Score=28.95 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=42.7
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
.|+||.. |.+...++|..+-+ |.+..|.+++-.. ... .-+|-.||.|.+.+.|.+++.-+
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~--k~~--------------~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN--KAH--------------PFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC--CCC--------------CCCCceEEEeecHHHHHhhhhhh
Confidence 4678877 44455555655555 7888887744321 111 23589999999999999988655
Q ss_pred Cceeeee
Q 015821 305 MAVIGGN 311 (399)
Q Consensus 305 g~~l~Gr 311 (399)
...+...
T Consensus 171 e~~~~e~ 177 (205)
T KOG4213|consen 171 EEKGAET 177 (205)
T ss_pred hhhccch
Confidence 4444333
Done!