Query 015821
Match_columns 399
No_of_seqs 355 out of 2176
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 4.7E-30 1.6E-34 231.6 18.3 155 221-399 9-163 (196)
2 3md3_A Nuclear and cytoplasmic 100.0 2E-29 6.9E-34 220.5 17.4 145 226-399 1-146 (166)
3 1fxl_A Paraneoplastic encephal 100.0 8.4E-29 2.9E-33 216.8 18.4 145 225-399 2-147 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 8.6E-29 2.9E-33 217.6 17.3 146 224-399 2-148 (168)
5 2cjk_A Nuclear polyadenylated 100.0 2.3E-29 7.9E-34 221.4 11.1 145 224-399 2-146 (167)
6 4f02_A Polyadenylate-binding p 100.0 9.5E-29 3.3E-33 228.8 15.6 146 224-399 14-160 (213)
7 3nmr_A Cugbp ELAV-like family 100.0 7.4E-28 2.5E-32 212.7 16.8 148 224-399 2-153 (175)
8 2qfj_A FBP-interacting repress 100.0 2.8E-28 9.5E-33 223.2 13.7 154 225-399 28-184 (216)
9 2g4b_A Splicing factor U2AF 65 100.0 1.3E-27 4.5E-32 211.2 16.2 140 224-399 3-153 (172)
10 2yh0_A Splicing factor U2AF 65 99.9 3.1E-27 1.1E-31 213.3 16.7 149 224-399 3-173 (198)
11 3tyt_A Heterogeneous nuclear r 99.9 1E-26 3.6E-31 215.3 15.5 148 224-399 3-182 (205)
12 1fje_B Nucleolin RBD12, protei 99.9 4.9E-27 1.7E-31 208.6 11.7 145 221-399 9-153 (175)
13 2ghp_A U4/U6 snRNA-associated 99.9 2.2E-26 7.5E-31 221.3 14.8 138 222-399 38-176 (292)
14 3sde_A Paraspeckle component 1 99.9 5E-26 1.7E-30 216.9 16.6 135 222-399 19-154 (261)
15 2ghp_A U4/U6 snRNA-associated 99.9 8.5E-26 2.9E-30 217.2 14.9 152 224-399 116-271 (292)
16 3smz_A Protein raver-1, ribonu 99.9 2.1E-25 7.2E-30 213.6 17.4 148 224-399 94-243 (284)
17 3smz_A Protein raver-1, ribonu 99.9 2.3E-25 7.7E-30 213.4 17.3 132 225-399 22-154 (284)
18 3pgw_A U1-A; protein-RNA compl 99.9 1E-24 3.5E-29 208.7 18.2 149 222-399 6-261 (282)
19 1qm9_A Polypyrimidine tract-bi 99.9 6.7E-25 2.3E-29 199.1 13.4 144 225-399 3-175 (198)
20 2adc_A Polypyrimidine tract-bi 99.9 1.9E-24 6.6E-29 202.0 16.9 146 223-399 32-206 (229)
21 4f25_A Polyadenylate-binding p 99.8 5.7E-21 2E-25 160.5 10.3 109 224-352 4-113 (115)
22 4fxv_A ELAV-like protein 1; RN 99.7 5.3E-18 1.8E-22 139.1 10.2 80 224-320 18-98 (99)
23 2kn4_A Immunoglobulin G-bindin 99.7 1.4E-17 4.8E-22 146.4 11.1 111 282-399 11-129 (158)
24 2hvz_A Splicing factor, argini 99.7 3.5E-17 1.2E-21 133.4 9.8 98 226-345 1-100 (101)
25 2lxi_A RNA-binding protein 10; 99.7 1.5E-17 5.2E-22 134.1 7.0 81 225-322 1-84 (91)
26 3lqv_A PRE-mRNA branch site pr 99.7 2.4E-17 8.3E-22 137.5 7.7 102 223-361 6-108 (115)
27 3s8s_A Histone-lysine N-methyl 99.7 1.2E-16 4E-21 133.7 10.8 82 223-321 4-86 (110)
28 2fy1_A RNA-binding motif prote 99.7 2E-16 6.7E-21 133.1 12.1 85 223-325 5-90 (116)
29 3s7r_A Heterogeneous nuclear r 99.7 1.4E-16 4.8E-21 126.1 10.4 80 222-318 8-87 (87)
30 2dgs_A DAZ-associated protein 99.7 2E-16 6.8E-21 128.4 11.2 84 223-323 8-91 (99)
31 3md1_A Nuclear and cytoplasmic 99.7 2E-16 6.9E-21 123.8 10.5 79 226-321 2-81 (83)
32 1s79_A Lupus LA protein; RRM, 99.7 8.1E-17 2.8E-21 133.2 8.4 80 223-320 9-88 (103)
33 2cq0_A Eukaryotic translation 99.7 3E-16 1E-20 128.3 11.1 85 221-322 11-96 (103)
34 1whw_A Hypothetical protein ri 99.7 3.5E-16 1.2E-20 126.8 11.3 84 223-323 6-90 (99)
35 3p5t_L Cleavage and polyadenyl 99.7 6.6E-17 2.3E-21 129.4 6.8 80 226-322 2-84 (90)
36 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.3E-16 8E-21 124.6 9.8 80 224-320 5-85 (87)
37 2i2y_A Fusion protein consists 99.7 1.1E-16 3.9E-21 139.8 8.6 108 282-399 11-127 (150)
38 2dgo_A Cytotoxic granule-assoc 99.7 7.2E-16 2.5E-20 128.5 13.1 86 221-323 11-97 (115)
39 3ucg_A Polyadenylate-binding p 99.7 3.1E-16 1.1E-20 124.3 10.4 80 225-321 6-85 (89)
40 2dnz_A Probable RNA-binding pr 99.7 4.6E-16 1.6E-20 125.0 11.2 82 224-322 4-86 (95)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.6E-16 8.7E-21 123.8 9.5 79 223-318 5-84 (85)
42 2do4_A Squamous cell carcinoma 99.7 4.6E-16 1.6E-20 126.5 11.2 83 222-322 14-97 (100)
43 1x5u_A Splicing factor 3B subu 99.7 4.6E-16 1.6E-20 127.4 11.1 86 221-323 11-97 (105)
44 2cqc_A Arginine/serine-rich sp 99.7 4.6E-16 1.6E-20 124.8 10.8 83 221-320 11-94 (95)
45 2lkz_A RNA-binding protein 5; 99.7 1.4E-16 4.9E-21 130.0 7.8 80 224-320 8-94 (95)
46 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4E-16 1.4E-20 127.1 10.4 85 222-323 9-94 (102)
47 2dng_A Eukaryotic translation 99.7 6.3E-16 2.2E-20 126.5 11.5 83 222-322 12-94 (103)
48 2cpf_A RNA binding motif prote 99.7 4.6E-16 1.6E-20 125.9 10.3 86 224-323 4-90 (98)
49 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.3E-16 2.8E-20 125.6 11.8 82 222-322 12-94 (103)
50 3ns6_A Eukaryotic translation 99.7 1.4E-16 4.9E-21 130.3 7.2 81 223-320 4-92 (100)
51 2x1f_A MRNA 3'-END-processing 99.7 4.4E-16 1.5E-20 125.8 10.0 81 225-322 2-83 (96)
52 1wi8_A EIF-4B, eukaryotic tran 99.7 7.6E-16 2.6E-20 126.2 11.5 84 223-323 13-96 (104)
53 1x5t_A Splicing factor 3B subu 99.6 4.2E-16 1.4E-20 125.5 9.7 82 224-322 4-87 (96)
54 2mss_A Protein (musashi1); RNA 99.6 1.7E-16 5.7E-21 122.3 7.0 75 227-318 1-75 (75)
55 1x4h_A RNA-binding protein 28; 99.6 6.9E-16 2.4E-20 127.5 11.2 85 222-323 12-103 (111)
56 2dnh_A Bruno-like 5, RNA bindi 99.6 7.6E-16 2.6E-20 126.1 11.3 82 223-322 13-98 (105)
57 2cpz_A CUG triplet repeat RNA- 99.6 6.3E-16 2.2E-20 129.0 11.0 83 223-322 23-106 (115)
58 2ywk_A Putative RNA-binding pr 99.6 5.6E-16 1.9E-20 124.5 10.2 79 223-319 14-93 (95)
59 1x5s_A Cold-inducible RNA-bind 99.6 3.8E-16 1.3E-20 127.3 9.3 85 222-323 9-94 (102)
60 2dnm_A SRP46 splicing factor; 99.6 3.9E-16 1.3E-20 127.6 9.3 84 222-322 10-94 (103)
61 2cq3_A RNA-binding protein 9; 99.6 1.4E-15 4.7E-20 124.3 12.4 84 220-322 10-94 (103)
62 2div_A TRNA selenocysteine ass 99.6 6.5E-16 2.2E-20 125.2 10.4 83 223-322 7-95 (99)
63 2rs2_A Musashi-1, RNA-binding 99.6 6.1E-16 2.1E-20 128.6 10.4 85 221-322 21-105 (109)
64 2e5h_A Zinc finger CCHC-type a 99.6 6.6E-16 2.3E-20 123.8 10.2 81 222-319 13-94 (94)
65 1p27_B RNA-binding protein 8A; 99.6 5E-16 1.7E-20 127.4 9.4 81 224-321 22-103 (106)
66 2cph_A RNA binding motif prote 99.6 9.3E-16 3.2E-20 125.9 10.6 84 222-322 12-98 (107)
67 2cpy_A RNA-binding protein 12; 99.6 4.4E-16 1.5E-20 130.2 8.7 83 221-321 11-94 (114)
68 2dh8_A DAZ-associated protein 99.6 6.5E-16 2.2E-20 126.7 9.5 85 222-323 13-97 (105)
69 2dhg_A TRNA selenocysteine ass 99.6 1.1E-15 3.7E-20 125.0 10.8 84 222-323 6-92 (104)
70 2jrs_A RNA-binding protein 39; 99.6 9.1E-16 3.1E-20 127.5 10.4 83 222-321 23-106 (108)
71 4a8x_A RNA-binding protein wit 99.6 6.4E-16 2.2E-20 122.1 9.0 83 224-322 3-86 (88)
72 2cqg_A TDP-43, TAR DNA-binding 99.6 2.3E-15 8E-20 122.9 12.5 84 222-323 12-95 (103)
73 2dgv_A HnRNP M, heterogeneous 99.6 1.1E-15 3.7E-20 122.1 10.0 81 223-322 6-87 (92)
74 2dgp_A Bruno-like 4, RNA bindi 99.6 8.9E-16 3E-20 125.9 9.7 86 221-323 9-98 (106)
75 2la6_A RNA-binding protein FUS 99.6 1E-15 3.4E-20 124.4 9.8 80 222-318 10-98 (99)
76 1x4b_A Heterogeneous nuclear r 99.6 1.5E-15 5E-20 126.9 11.0 83 224-323 26-108 (116)
77 1oo0_B CG8781-PA, drosophila Y 99.6 8.9E-16 3E-20 126.9 9.5 82 223-321 24-106 (110)
78 1wez_A HnRNP H', FTP-3, hetero 99.6 8E-16 2.7E-20 126.7 9.1 83 221-322 11-93 (102)
79 1x4e_A RNA binding motif, sing 99.6 4.9E-16 1.7E-20 122.5 7.5 79 224-319 4-83 (85)
80 2cqd_A RNA-binding region cont 99.6 2.3E-15 7.8E-20 125.7 11.9 84 221-322 13-97 (116)
81 2cpe_A RNA-binding protein EWS 99.6 1.2E-15 4E-20 126.8 10.1 85 222-323 12-105 (113)
82 2d9p_A Polyadenylate-binding p 99.6 1.6E-15 5.6E-20 123.9 10.7 83 222-323 12-95 (103)
83 2dgw_A Probable RNA-binding pr 99.6 2E-15 6.7E-20 120.6 11.0 81 222-321 7-87 (91)
84 1x4a_A Splicing factor, argini 99.6 2E-15 7E-20 124.7 11.4 82 222-323 19-101 (109)
85 1p1t_A Cleavage stimulation fa 99.6 5E-16 1.7E-20 126.9 7.6 82 224-322 7-89 (104)
86 2do0_A HnRNP M, heterogeneous 99.6 3.3E-15 1.1E-19 124.1 12.6 82 222-321 12-94 (114)
87 1wg5_A Heterogeneous nuclear r 99.6 1.4E-15 4.9E-20 125.1 10.3 81 223-321 13-94 (104)
88 2jwn_A Embryonic polyadenylate 99.6 1.7E-15 5.8E-20 127.8 10.9 80 225-321 36-115 (124)
89 2dgx_A KIAA0430 protein; RRM d 99.6 2.1E-15 7.1E-20 122.2 10.7 80 223-322 7-91 (96)
90 2db1_A Heterogeneous nuclear r 99.6 1E-15 3.4E-20 129.2 9.0 81 222-320 14-97 (118)
91 2khc_A Testis-specific RNP-typ 99.6 1.1E-15 3.9E-20 127.8 9.1 81 221-318 36-117 (118)
92 2cq4_A RNA binding motif prote 99.6 6.6E-16 2.2E-20 128.7 7.6 81 224-321 24-104 (114)
93 3ulh_A THO complex subunit 4; 99.6 1.9E-15 6.6E-20 124.1 10.3 79 223-319 27-106 (107)
94 2cpi_A CCR4-NOT transcription 99.6 1.6E-15 5.6E-20 126.2 9.8 85 224-322 14-102 (111)
95 2kxn_B Transformer-2 protein h 99.6 1.6E-15 5.5E-20 130.1 9.8 85 221-322 42-127 (129)
96 2j76_E EIF-4B, EIF4B, eukaryot 99.6 6.5E-16 2.2E-20 126.1 6.9 82 223-321 17-98 (100)
97 1u6f_A Tcubp1, RNA-binding pro 99.6 3.9E-15 1.3E-19 128.0 11.9 86 220-322 37-123 (139)
98 3n9u_C Cleavage and polyadenyl 99.6 1.9E-15 6.4E-20 134.0 10.1 80 224-320 54-136 (156)
99 2cqp_A RNA-binding protein 12; 99.6 1.5E-15 5E-20 122.9 8.6 82 223-321 13-95 (98)
100 1iqt_A AUF1, heterogeneous nuc 99.6 4.1E-16 1.4E-20 119.9 4.8 75 227-318 1-75 (75)
101 1sjq_A Polypyrimidine tract-bi 99.6 1.9E-15 6.5E-20 125.8 9.1 78 222-322 13-93 (105)
102 2ek1_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 122.7 7.4 79 224-319 14-93 (95)
103 2err_A Ataxin-2-binding protei 99.6 2E-15 7E-20 125.3 9.2 81 222-321 26-107 (109)
104 1uaw_A Mouse-musashi-1; RNP-ty 99.6 8E-16 2.8E-20 118.7 6.2 75 226-318 1-76 (77)
105 2lmi_A GRSF-1, G-rich sequence 99.6 9.4E-16 3.2E-20 126.8 6.9 82 221-320 7-91 (107)
106 2dnp_A RNA-binding protein 14; 99.6 5.4E-15 1.9E-19 117.9 10.9 77 221-322 5-82 (90)
107 2m2b_A RNA-binding protein 10; 99.6 1.5E-15 5.3E-20 130.0 8.2 84 222-323 20-110 (131)
108 2hgl_A HNRPF protein, heteroge 99.6 1.9E-15 6.6E-20 131.3 8.8 81 222-320 41-124 (136)
109 3ex7_B RNA-binding protein 8A; 99.6 2.6E-15 8.9E-20 127.1 9.0 82 223-321 20-102 (126)
110 2dnn_A RNA-binding protein 12; 99.6 3E-15 1E-19 125.2 9.2 77 225-320 16-92 (109)
111 1h2v_Z 20 kDa nuclear CAP bind 99.6 5.8E-15 2E-19 129.7 11.4 83 223-322 37-120 (156)
112 2kn4_A Immunoglobulin G-bindin 99.6 4.5E-15 1.6E-19 130.2 10.7 84 222-322 67-151 (158)
113 2fc9_A NCL protein; structure 99.6 5.9E-15 2E-19 120.1 10.6 82 221-323 11-93 (101)
114 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5E-15 1.7E-19 126.9 10.5 82 220-318 58-140 (140)
115 2dgt_A RNA-binding protein 30; 99.6 8.5E-15 2.9E-19 117.3 11.2 77 222-323 7-84 (92)
116 2ki2_A SS-DNA binding protein 99.6 7E-16 2.4E-20 122.8 4.7 78 226-321 2-80 (90)
117 1x4d_A Matrin 3; structural ge 99.6 3E-15 1E-19 123.9 8.5 76 224-322 14-93 (102)
118 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-14 4.5E-19 117.7 12.2 77 222-323 12-91 (99)
119 2dnq_A RNA-binding protein 4B; 99.6 7.3E-15 2.5E-19 117.2 10.4 76 223-323 6-82 (90)
120 1x5o_A RNA binding motif, sing 99.6 8.4E-15 2.9E-19 121.8 11.2 81 223-321 23-112 (114)
121 2nlw_A Eukaryotic translation 99.6 4.9E-15 1.7E-19 122.1 9.6 81 222-321 12-100 (105)
122 2e5j_A Methenyltetrahydrofolat 99.6 4.6E-15 1.6E-19 120.1 9.3 79 222-322 16-95 (97)
123 2dis_A Unnamed protein product 99.6 6.2E-15 2.1E-19 121.4 10.1 82 224-322 7-93 (109)
124 2wbr_A GW182, gawky, LD47780P; 99.6 4.3E-15 1.5E-19 119.7 8.5 73 224-319 6-79 (89)
125 2kt5_A RNA and export factor-b 99.6 7.5E-15 2.6E-19 124.1 10.5 82 222-321 32-114 (124)
126 2xnq_A Nuclear polyadenylated 99.6 9E-15 3.1E-19 119.0 10.6 75 222-321 19-95 (97)
127 1wel_A RNA-binding protein 12; 99.6 1.7E-15 6E-20 128.3 6.5 81 223-320 23-103 (124)
128 2ytc_A PRE-mRNA-splicing facto 99.6 6.7E-15 2.3E-19 115.7 9.4 74 222-318 9-84 (85)
129 3r27_A HnRNP L, heterogeneous 99.6 6.4E-15 2.2E-19 121.6 9.6 76 223-321 19-97 (100)
130 1x4g_A Nucleolysin TIAR; struc 99.6 9.7E-15 3.3E-19 120.7 10.7 77 223-322 23-100 (109)
131 2krb_A Eukaryotic translation 99.6 3.3E-15 1.1E-19 117.0 7.3 73 225-316 1-81 (81)
132 1fj7_A Nucleolin RBD1, protein 99.6 1.1E-15 3.8E-20 124.4 4.8 83 222-322 14-96 (101)
133 2cq1_A PTB-like protein L; RRM 99.6 1.2E-14 4E-19 120.0 10.7 77 223-322 13-92 (101)
134 1wex_A Hypothetical protein (r 99.6 1.2E-14 3.9E-19 120.6 10.7 77 223-322 13-92 (104)
135 2jvr_A Nucleolar protein 3; RN 99.6 4.4E-15 1.5E-19 124.6 8.2 79 222-321 25-105 (111)
136 1nu4_A U1A RNA binding domain; 99.6 3.3E-15 1.1E-19 120.4 7.1 79 223-321 6-89 (97)
137 2cpj_A Non-POU domain-containi 99.6 8.6E-15 3E-19 118.8 9.5 78 222-322 12-90 (99)
138 2lea_A Serine/arginine-rich sp 99.6 4.8E-15 1.7E-19 128.0 8.5 83 223-322 45-128 (135)
139 2a3j_A U1 small nuclear ribonu 99.6 7.2E-15 2.4E-19 126.2 9.4 79 223-321 27-110 (127)
140 2ad9_A Polypyrimidine tract-bi 99.6 1.1E-14 3.7E-19 123.9 10.3 77 223-322 29-108 (119)
141 1x4c_A Splicing factor, argini 99.6 2.3E-14 7.8E-19 118.5 12.0 77 223-323 13-95 (108)
142 1rk8_A CG8781-PA, CG8781-PA pr 99.6 7.1E-15 2.4E-19 130.7 9.5 81 224-321 71-152 (165)
143 2dha_A FLJ20171 protein; RRM d 99.6 3.7E-15 1.2E-19 127.4 7.3 78 225-320 23-104 (123)
144 1why_A Hypothetical protein ri 99.6 9.4E-15 3.2E-19 118.2 9.3 76 223-321 15-93 (97)
145 2la4_A Nuclear and cytoplasmic 99.6 7.8E-15 2.7E-19 119.4 8.7 75 223-320 25-100 (101)
146 2dgu_A Heterogeneous nuclear r 99.6 2.1E-14 7.1E-19 117.5 11.1 76 223-323 9-85 (103)
147 2kvi_A Nuclear polyadenylated 99.6 5.2E-15 1.8E-19 119.7 7.2 75 223-322 8-84 (96)
148 2xs2_A Deleted in azoospermia- 99.6 3.5E-15 1.2E-19 121.6 6.2 80 223-321 7-86 (102)
149 1fjc_A Nucleolin RBD2, protein 99.5 1.2E-14 4.1E-19 117.0 8.7 78 223-322 14-92 (96)
150 2cpx_A Hypothetical protein FL 99.5 1.5E-14 5.1E-19 120.3 9.5 84 223-323 23-107 (115)
151 2jvo_A Nucleolar protein 3; nu 99.5 1.7E-14 5.9E-19 119.8 9.6 76 222-322 28-104 (108)
152 1whx_A Hypothetical protein ri 99.5 6.5E-15 2.2E-19 122.8 6.9 74 224-320 9-83 (111)
153 2hgm_A HNRPF protein, heteroge 99.5 8.1E-15 2.8E-19 125.8 7.5 79 223-320 40-120 (126)
154 2i2y_A Fusion protein consists 99.5 1.7E-14 5.7E-19 125.9 9.4 79 221-321 69-148 (150)
155 1wf1_A RNA-binding protein RAL 99.5 2.1E-14 7.3E-19 118.8 9.5 74 224-322 26-101 (110)
156 2cqh_A IGF-II mRNA-binding pro 99.5 1.7E-14 5.9E-19 115.6 8.6 76 223-322 6-84 (93)
157 2hzc_A Splicing factor U2AF 65 99.5 1.9E-14 6.6E-19 113.4 8.6 72 223-317 4-86 (87)
158 2hgn_A Heterogeneous nuclear r 99.5 3.5E-15 1.2E-19 130.1 4.6 81 223-322 44-124 (139)
159 1x4f_A Matrin 3; structural ge 99.5 1.5E-14 5.1E-19 121.7 8.2 78 222-322 22-103 (112)
160 2fc8_A NCL protein; structure 99.5 5E-14 1.7E-18 114.6 10.8 82 222-323 12-94 (102)
161 2lcw_A RNA-binding protein FUS 99.3 8E-16 2.7E-20 128.6 0.0 85 223-324 5-98 (116)
162 3q2s_C Cleavage and polyadenyl 99.5 1.4E-14 4.9E-19 136.0 8.5 80 224-320 67-149 (229)
163 3egn_A RNA-binding protein 40; 99.5 3.1E-14 1.1E-18 123.3 9.2 85 222-321 42-130 (143)
164 2e5g_A U6 snRNA-specific termi 99.5 9.4E-14 3.2E-18 111.7 11.1 77 224-322 7-83 (94)
165 2e44_A Insulin-like growth fac 99.5 3.9E-14 1.3E-18 114.0 8.8 77 224-321 14-92 (96)
166 3d2w_A TAR DNA-binding protein 99.5 4.3E-14 1.5E-18 113.3 8.2 75 222-321 8-84 (89)
167 2cjk_A Nuclear polyadenylated 99.5 3.2E-14 1.1E-18 124.4 7.9 80 225-321 87-166 (167)
168 1x5p_A Negative elongation fac 99.5 1.5E-13 5.3E-18 111.1 11.2 75 223-322 13-88 (97)
169 3md3_A Nuclear and cytoplasmic 99.5 1.3E-13 4.3E-18 119.8 11.4 81 222-319 84-165 (166)
170 4fxv_A ELAV-like protein 1; RN 99.5 4E-14 1.4E-18 115.8 7.4 61 335-399 18-78 (99)
171 1wf0_A TDP-43, TAR DNA-binding 99.5 4.8E-14 1.7E-18 111.9 7.5 77 224-323 4-80 (88)
172 1l3k_A Heterogeneous nuclear r 99.5 1E-13 3.5E-18 124.3 10.5 83 224-323 103-185 (196)
173 2lxi_A RNA-binding protein 10; 99.5 9.6E-15 3.3E-19 117.5 3.4 60 336-399 1-61 (91)
174 2voo_A Lupus LA protein; RNA-b 99.5 1.1E-13 3.7E-18 126.7 10.3 78 225-320 109-186 (193)
175 2f3j_A RNA and export factor b 99.5 8.2E-14 2.8E-18 125.9 9.3 82 222-321 85-167 (177)
176 2qfj_A FBP-interacting repress 99.5 1.7E-13 5.8E-18 124.6 11.1 81 225-322 125-206 (216)
177 1wg1_A KIAA1579 protein, homol 99.5 1.1E-13 3.7E-18 110.1 8.5 73 224-320 4-77 (88)
178 4f02_A Polyadenylate-binding p 99.5 1.6E-13 5.4E-18 126.4 10.1 78 225-321 103-181 (213)
179 3pgw_S U1-70K; protein-RNA com 99.5 1.3E-13 4.5E-18 141.2 10.2 81 224-321 101-182 (437)
180 2g4b_A Splicing factor U2AF 65 99.5 1.2E-13 4.2E-18 121.2 8.6 77 225-318 94-171 (172)
181 2yh0_A Splicing factor U2AF 65 99.4 2.4E-13 8.1E-18 122.1 10.1 83 223-322 112-195 (198)
182 2lea_A Serine/arginine-rich sp 99.4 5.9E-14 2E-18 121.2 5.5 101 285-399 5-106 (135)
183 2lkz_A RNA-binding protein 5; 99.4 3.4E-14 1.2E-18 115.8 3.8 61 335-399 8-70 (95)
184 3s8s_A Histone-lysine N-methyl 99.4 1.6E-13 5.6E-18 114.4 7.8 61 335-399 5-65 (110)
185 3beg_B Splicing factor, argini 99.4 1.9E-13 6.4E-18 114.5 8.1 74 224-321 15-94 (115)
186 3zzy_A Polypyrimidine tract-bi 99.4 6.2E-13 2.1E-17 114.7 11.2 78 223-322 26-107 (130)
187 2dnl_A Cytoplasmic polyadenyla 99.4 4.4E-13 1.5E-17 111.9 10.0 79 223-318 6-85 (114)
188 3s7r_A Heterogeneous nuclear r 99.4 2.1E-13 7.2E-18 107.7 7.6 63 333-399 8-70 (87)
189 1s79_A Lupus LA protein; RRM, 99.4 2.5E-13 8.7E-18 112.0 8.1 61 334-399 9-69 (103)
190 3nmr_A Cugbp ELAV-like family 99.4 4.6E-13 1.6E-17 117.4 10.0 77 224-318 94-174 (175)
191 2cq2_A Hypothetical protein LO 99.4 2.6E-13 8.9E-18 114.5 8.0 74 224-320 24-105 (114)
192 2dgs_A DAZ-associated protein 99.4 4.3E-13 1.5E-17 108.5 8.6 63 333-399 7-69 (99)
193 1sjr_A Polypyrimidine tract-bi 99.4 5.1E-13 1.7E-17 119.5 9.7 78 224-322 45-125 (164)
194 1b7f_A Protein (SXL-lethal pro 99.4 6.6E-13 2.3E-17 115.8 10.2 79 223-318 87-168 (168)
195 3pgw_S U1-70K; protein-RNA com 99.4 8.2E-14 2.8E-18 142.7 4.4 62 334-399 100-161 (437)
196 2e5i_A Heterogeneous nuclear r 99.4 1.2E-12 4.1E-17 112.0 10.9 74 226-322 26-103 (124)
197 1rk8_A CG8781-PA, CG8781-PA pr 99.4 3.8E-13 1.3E-17 119.5 8.0 107 289-399 11-131 (165)
198 3bs9_A Nucleolysin TIA-1 isofo 99.4 5.3E-13 1.8E-17 105.1 7.4 62 334-399 4-65 (87)
199 3mdf_A Peptidyl-prolyl CIS-tra 99.4 4.1E-13 1.4E-17 105.2 6.8 62 334-399 5-66 (85)
200 2diu_A KIAA0430 protein; struc 99.4 5.5E-13 1.9E-17 108.5 7.6 70 225-321 8-84 (96)
201 1fxl_A Paraneoplastic encephal 99.4 9.1E-13 3.1E-17 114.5 9.6 78 224-318 87-167 (167)
202 2cqg_A TDP-43, TAR DNA-binding 99.4 6.9E-13 2.3E-17 108.1 8.2 63 333-399 12-74 (103)
203 1x4e_A RNA binding motif, sing 99.4 4.3E-13 1.5E-17 105.4 6.7 62 334-399 3-64 (85)
204 3md1_A Nuclear and cytoplasmic 99.4 6.1E-13 2.1E-17 103.8 7.4 59 337-399 2-60 (83)
205 2bz2_A Negative elongation fac 99.4 7.8E-13 2.7E-17 112.1 8.6 74 223-321 37-111 (121)
206 3p5t_L Cleavage and polyadenyl 99.4 2.4E-13 8.2E-18 108.5 5.1 59 337-399 2-62 (90)
207 1x4h_A RNA-binding protein 28; 99.4 5.9E-13 2E-17 109.7 7.5 63 333-399 12-74 (111)
208 2cqc_A Arginine/serine-rich sp 99.4 1.1E-12 3.6E-17 105.0 8.7 63 333-399 12-74 (95)
209 2dnz_A Probable RNA-binding pr 99.4 9.1E-13 3.1E-17 105.6 8.0 61 335-399 4-64 (95)
210 2dnm_A SRP46 splicing factor; 99.4 5.5E-13 1.9E-17 108.7 6.8 65 331-399 8-72 (103)
211 2div_A TRNA selenocysteine ass 99.4 7.5E-13 2.6E-17 107.0 7.5 63 333-399 6-69 (99)
212 2x1f_A MRNA 3'-END-processing 99.4 6.4E-13 2.2E-17 107.1 7.0 61 335-399 1-61 (96)
213 3ucg_A Polyadenylate-binding p 99.4 9.8E-13 3.4E-17 104.0 7.9 61 335-399 5-65 (89)
214 1whw_A Hypothetical protein ri 99.4 8E-13 2.7E-17 106.8 7.5 62 334-399 6-67 (99)
215 3ns6_A Eukaryotic translation 99.4 2.1E-13 7.2E-18 111.3 4.0 61 335-399 5-71 (100)
216 2dh8_A DAZ-associated protein 99.4 8.8E-13 3E-17 107.8 7.7 63 333-399 13-75 (105)
217 2j8a_A Histone-lysine N-methyl 99.4 7.9E-13 2.7E-17 113.6 7.5 77 226-319 3-94 (136)
218 2dhg_A TRNA selenocysteine ass 99.4 1.2E-12 3.9E-17 106.8 8.2 62 333-399 6-68 (104)
219 2rs2_A Musashi-1, RNA-binding 99.4 7E-13 2.4E-17 110.0 6.9 63 333-399 22-84 (109)
220 2pe8_A Splicing factor 45; RRM 99.4 3.1E-12 1.1E-16 106.1 10.8 82 223-320 6-93 (105)
221 2e5h_A Zinc finger CCHC-type a 99.4 1.1E-12 3.9E-17 104.8 7.9 63 333-399 13-75 (94)
222 1uaw_A Mouse-musashi-1; RNP-ty 99.4 3.5E-13 1.2E-17 103.7 4.6 59 337-399 1-59 (77)
223 1x5s_A Cold-inducible RNA-bind 99.4 9.1E-13 3.1E-17 107.1 7.2 63 333-399 9-71 (102)
224 2la6_A RNA-binding protein FUS 99.4 1.1E-12 3.7E-17 106.3 7.6 63 333-399 10-80 (99)
225 2dng_A Eukaryotic translation 99.4 1.8E-12 6.2E-17 105.7 8.8 62 333-399 12-73 (103)
226 2dgp_A Bruno-like 4, RNA bindi 99.4 8E-13 2.7E-17 108.2 6.7 63 333-399 10-72 (106)
227 1x5u_A Splicing factor 3B subu 99.4 1.3E-12 4.3E-17 106.8 7.8 63 333-399 12-74 (105)
228 1wg5_A Heterogeneous nuclear r 99.4 1.1E-12 3.7E-17 107.7 7.4 62 333-399 12-74 (104)
229 1p27_B RNA-binding protein 8A; 99.4 1.3E-12 4.5E-17 106.8 7.9 63 333-399 20-82 (106)
230 2mss_A Protein (musashi1); RNA 99.4 6E-13 2E-17 102.1 5.4 58 338-399 1-58 (75)
231 2cqd_A RNA-binding region cont 99.4 1.4E-12 4.9E-17 108.6 8.1 63 333-399 14-76 (116)
232 1iqt_A AUF1, heterogeneous nuc 99.4 3.7E-13 1.2E-17 103.2 4.1 58 338-399 1-58 (75)
233 2cph_A RNA binding motif prote 99.3 1.7E-12 5.8E-17 106.2 8.2 63 333-399 12-75 (107)
234 1x5t_A Splicing factor 3B subu 99.3 6.9E-13 2.4E-17 106.5 5.7 61 335-399 4-65 (96)
235 2dgo_A Cytotoxic granule-assoc 99.3 1.9E-12 6.3E-17 107.6 8.5 63 333-399 12-74 (115)
236 2cq4_A RNA binding motif prote 99.3 1.2E-12 4E-17 108.8 7.1 62 334-399 23-84 (114)
237 2cq0_A Eukaryotic translation 99.3 1.2E-12 4.1E-17 106.7 7.0 63 333-399 12-74 (103)
238 2cqb_A Peptidyl-prolyl CIS-tra 99.3 8.3E-13 2.9E-17 107.3 6.0 63 333-399 9-71 (102)
239 4f25_A Polyadenylate-binding p 99.3 1.1E-12 3.6E-17 109.8 6.8 58 336-399 5-62 (115)
240 2do4_A Squamous cell carcinoma 99.3 2.6E-12 9E-17 104.1 8.8 62 333-399 14-75 (100)
241 2dnh_A Bruno-like 5, RNA bindi 99.3 2E-12 6.9E-17 105.5 8.2 61 334-399 13-73 (105)
242 2hgn_A Heterogeneous nuclear r 99.3 4.7E-13 1.6E-17 116.6 4.6 102 285-399 2-103 (139)
243 2cpz_A CUG triplet repeat RNA- 99.3 1.6E-12 5.3E-17 108.2 7.3 63 333-399 22-84 (115)
244 1p1t_A Cleavage stimulation fa 99.3 7.3E-13 2.5E-17 107.9 5.2 63 333-399 5-67 (104)
245 1fje_B Nucleolin RBD12, protei 99.3 2.9E-12 1E-16 113.0 9.5 76 223-320 97-173 (175)
246 2cpf_A RNA binding motif prote 99.3 1.1E-12 3.9E-17 105.7 6.3 61 335-399 4-67 (98)
247 2jrs_A RNA-binding protein 39; 99.3 1.8E-12 6.2E-17 107.4 7.6 63 333-399 23-85 (108)
248 1oo0_B CG8781-PA, drosophila Y 99.3 1.8E-12 6.2E-17 106.8 7.2 63 333-399 23-85 (110)
249 1wi8_A EIF-4B, eukaryotic tran 99.3 1.6E-12 5.5E-17 106.2 6.8 62 333-399 12-74 (104)
250 2ywk_A Putative RNA-binding pr 99.3 2.1E-12 7.3E-17 103.4 7.4 62 333-399 13-74 (95)
251 2cpy_A RNA-binding protein 12; 99.3 1.4E-12 4.7E-17 108.8 6.5 62 333-399 12-74 (114)
252 3n9u_C Cleavage and polyadenyl 99.3 1.6E-12 5.5E-17 115.1 7.3 61 335-399 54-116 (156)
253 2hgl_A HNRPF protein, heteroge 99.3 1.1E-12 3.7E-17 113.8 5.9 62 333-399 41-105 (136)
254 2xs2_A Deleted in azoospermia- 99.3 1.4E-12 4.8E-17 106.1 6.1 61 334-399 7-67 (102)
255 2kxn_B Transformer-2 protein h 99.3 3.3E-12 1.1E-16 109.4 8.7 63 333-399 43-105 (129)
256 1x4b_A Heterogeneous nuclear r 99.3 1.6E-12 5.6E-17 108.2 6.6 63 333-399 24-86 (116)
257 3u1l_A PRE-mRNA-splicing facto 99.3 2.4E-12 8.2E-17 121.9 8.2 76 222-320 131-228 (240)
258 3ulh_A THO complex subunit 4; 99.3 3E-12 1E-16 104.9 7.7 62 333-399 26-87 (107)
259 2khc_A Testis-specific RNP-typ 99.3 3.5E-12 1.2E-16 106.4 8.2 63 333-399 37-99 (118)
260 1wez_A HnRNP H', FTP-3, hetero 99.3 1.5E-12 5E-17 107.0 5.6 61 333-399 12-72 (102)
261 2dit_A HIV TAT specific factor 99.3 1.5E-11 5E-16 102.3 11.6 81 221-322 11-103 (112)
262 2dis_A Unnamed protein product 99.3 2.5E-12 8.5E-17 105.7 6.5 62 334-399 6-69 (109)
263 2m2b_A RNA-binding protein 10; 99.3 1.7E-12 5.7E-17 111.0 5.6 62 333-399 20-83 (131)
264 2kt5_A RNA and export factor-b 99.3 5.1E-12 1.8E-16 106.6 8.3 63 332-399 31-93 (124)
265 3pgw_A U1-A; protein-RNA compl 99.3 6.2E-12 2.1E-16 119.7 9.9 76 222-319 204-281 (282)
266 2d9p_A Polyadenylate-binding p 99.3 5E-12 1.7E-16 102.9 8.0 61 333-399 12-72 (103)
267 2krb_A Eukaryotic translation 99.3 2.4E-12 8.1E-17 100.6 5.7 57 337-399 2-64 (81)
268 2db1_A Heterogeneous nuclear r 99.3 2.3E-12 7.8E-17 108.4 6.0 62 333-399 14-78 (118)
269 2j76_E EIF-4B, EIF4B, eukaryot 99.3 1.7E-12 5.7E-17 105.7 4.9 62 333-399 16-78 (100)
270 1sjq_A Polypyrimidine tract-bi 99.3 3.2E-12 1.1E-16 106.3 6.7 56 334-399 14-69 (105)
271 4a8x_A RNA-binding protein wit 99.3 2.3E-12 7.9E-17 101.5 5.6 60 336-399 4-64 (88)
272 2dha_A FLJ20171 protein; RRM d 99.3 1.9E-12 6.4E-17 110.5 5.3 64 335-399 22-85 (123)
273 2dgv_A HnRNP M, heterogeneous 99.3 6E-12 2.1E-16 100.1 7.9 61 333-399 5-65 (92)
274 3ex7_B RNA-binding protein 8A; 99.3 3.5E-12 1.2E-16 107.7 6.7 63 333-399 19-81 (126)
275 2cpe_A RNA-binding protein EWS 99.3 3.2E-12 1.1E-16 105.9 6.4 63 333-399 12-82 (113)
276 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 8E-12 2.7E-16 106.8 9.1 63 333-399 60-122 (140)
277 2fy1_A RNA-binding motif prote 99.3 3.8E-12 1.3E-16 106.7 6.9 61 334-399 5-65 (116)
278 1u6f_A Tcubp1, RNA-binding pro 99.3 3.9E-12 1.3E-16 109.2 6.9 63 333-399 39-101 (139)
279 2ek1_A RNA-binding protein 12; 99.3 1.4E-12 4.8E-17 104.4 3.9 62 334-399 13-74 (95)
280 1x5o_A RNA binding motif, sing 99.3 7.5E-12 2.6E-16 103.8 8.4 62 333-399 22-83 (114)
281 2dnl_A Cytoplasmic polyadenyla 99.3 2.3E-12 8E-17 107.4 5.3 61 334-399 6-69 (114)
282 2jwn_A Embryonic polyadenylate 99.3 3.7E-12 1.3E-16 107.2 6.4 61 335-399 35-95 (124)
283 2do0_A HnRNP M, heterogeneous 99.3 7.7E-12 2.6E-16 103.6 8.0 62 333-399 12-73 (114)
284 2dnn_A RNA-binding protein 12; 99.3 4E-12 1.4E-16 106.1 6.3 61 333-399 13-73 (109)
285 2lmi_A GRSF-1, G-rich sequence 99.3 2.2E-12 7.6E-17 106.4 4.6 62 333-399 8-72 (107)
286 2ad9_A Polypyrimidine tract-bi 99.3 5.8E-12 2E-16 107.0 7.2 58 332-399 27-84 (119)
287 1qm9_A Polypyrimidine tract-bi 99.3 5.7E-12 1.9E-16 113.7 7.4 75 224-320 119-196 (198)
288 2cqp_A RNA-binding protein 12; 99.3 2.9E-12 1E-16 103.3 4.9 63 333-399 12-74 (98)
289 1h2v_Z 20 kDa nuclear CAP bind 99.3 7.8E-12 2.7E-16 109.6 7.8 63 333-399 36-98 (156)
290 1wel_A RNA-binding protein 12; 99.3 3.2E-12 1.1E-16 108.1 5.0 63 333-399 22-84 (124)
291 2dgw_A Probable RNA-binding pr 99.3 9.5E-12 3.3E-16 99.0 7.4 61 333-399 7-67 (91)
292 3r27_A HnRNP L, heterogeneous 99.3 8.7E-12 3E-16 102.7 7.3 57 333-399 18-74 (100)
293 2hgm_A HNRPF protein, heteroge 99.3 6.5E-12 2.2E-16 107.7 6.7 60 334-399 40-101 (126)
294 2cqi_A Nucleolysin TIAR; RNA r 99.2 1.1E-11 3.8E-16 100.9 7.7 61 333-399 12-72 (103)
295 2cq3_A RNA-binding protein 9; 99.2 1.7E-11 5.7E-16 99.8 8.7 61 333-399 12-72 (103)
296 2cq1_A PTB-like protein L; RRM 99.2 1.1E-11 3.8E-16 102.0 7.5 57 333-399 12-68 (101)
297 3d2w_A TAR DNA-binding protein 99.2 9.5E-12 3.2E-16 99.6 6.9 56 334-398 9-64 (89)
298 2ki2_A SS-DNA binding protein 99.2 1.9E-12 6.6E-17 102.8 2.7 58 337-399 2-59 (90)
299 2adc_A Polypyrimidine tract-bi 99.2 1.5E-11 5E-16 114.4 9.1 75 224-320 150-227 (229)
300 3sde_A Paraspeckle component 1 99.2 1.9E-11 6.4E-16 116.0 9.9 79 225-321 96-179 (261)
301 1wex_A Hypothetical protein (r 99.2 1.9E-11 6.7E-16 101.0 8.2 57 333-399 12-68 (104)
302 3q2s_C Cleavage and polyadenyl 99.2 9.1E-12 3.1E-16 116.9 6.7 61 335-399 67-129 (229)
303 2nlw_A Eukaryotic translation 99.2 1.3E-11 4.3E-16 101.5 6.2 59 335-399 14-78 (105)
304 2dgx_A KIAA0430 protein; RRM d 99.2 1.8E-11 6E-16 98.9 6.9 60 333-399 6-69 (96)
305 1x4a_A Splicing factor, argini 99.2 2.1E-11 7.3E-16 100.3 7.5 60 333-399 19-78 (109)
306 3v4m_A Splicing factor U2AF 65 99.2 3.3E-11 1.1E-15 99.7 8.5 81 224-319 4-95 (105)
307 1jmt_A Splicing factor U2AF 35 99.2 6.6E-12 2.3E-16 103.7 4.1 71 230-318 20-103 (104)
308 1x4d_A Matrin 3; structural ge 99.2 8.8E-12 3E-16 103.0 4.6 57 333-399 12-69 (102)
309 2voo_A Lupus LA protein; RNA-b 99.2 1.8E-11 6.3E-16 111.8 7.2 102 293-399 63-167 (193)
310 3lqv_A PRE-mRNA branch site pr 99.2 2.3E-11 7.8E-16 101.0 7.1 59 334-399 6-64 (115)
311 2err_A Ataxin-2-binding protei 99.2 1.6E-11 5.4E-16 101.6 6.1 61 333-399 26-86 (109)
312 3tyt_A Heterogeneous nuclear r 99.2 3.1E-11 1.1E-15 111.1 8.2 75 224-317 122-203 (205)
313 1wf0_A TDP-43, TAR DNA-binding 99.2 1.4E-11 4.9E-16 97.5 5.1 56 335-399 4-59 (88)
314 2cpi_A CCR4-NOT transcription 99.2 1.6E-11 5.6E-16 101.8 5.1 61 335-399 14-80 (111)
315 1x4c_A Splicing factor, argini 99.2 5.3E-11 1.8E-15 98.1 7.9 56 333-399 12-67 (108)
316 2ytc_A PRE-mRNA-splicing facto 99.2 6.4E-11 2.2E-15 92.7 8.0 57 333-399 9-65 (85)
317 3ue2_A Poly(U)-binding-splicin 99.2 1.3E-10 4.3E-15 98.4 9.9 83 224-319 19-107 (118)
318 2fc9_A NCL protein; structure 99.2 3.5E-11 1.2E-15 97.6 6.1 59 333-399 12-70 (101)
319 2lcw_A RNA-binding protein FUS 98.8 3.4E-12 1.2E-16 106.5 0.0 62 334-399 5-74 (116)
320 1fj7_A Nucleolin RBD1, protein 99.2 4.4E-12 1.5E-16 103.0 0.6 61 334-399 15-75 (101)
321 2fc8_A NCL protein; structure 99.1 5E-11 1.7E-15 96.7 6.9 60 333-399 12-71 (102)
322 2cpx_A Hypothetical protein FL 99.1 1.5E-11 5.1E-16 102.0 3.2 63 333-399 22-84 (115)
323 2dnq_A RNA-binding protein 4B; 99.1 8.8E-11 3E-15 93.3 7.5 55 333-399 5-59 (90)
324 1x4f_A Matrin 3; structural ge 99.1 2.8E-11 9.6E-16 101.7 4.8 57 333-399 22-79 (112)
325 2a3j_A U1 small nuclear ribonu 99.1 5.9E-11 2E-15 101.7 6.9 60 333-399 26-89 (127)
326 1why_A Hypothetical protein ri 99.1 7.1E-11 2.4E-15 95.1 6.8 57 333-399 14-70 (97)
327 1nu4_A U1A RNA binding domain; 99.1 2.4E-11 8E-16 97.6 3.9 60 333-399 5-68 (97)
328 2hvz_A Splicing factor, argini 99.1 5.4E-11 1.8E-15 96.4 5.5 54 337-399 1-54 (101)
329 2wbr_A GW182, gawky, LD47780P; 99.1 7.3E-11 2.5E-15 94.9 5.9 55 335-399 6-60 (89)
330 2f3j_A RNA and export factor b 99.1 7.3E-11 2.5E-15 106.4 6.6 62 333-399 85-146 (177)
331 2j8a_A Histone-lysine N-methyl 99.1 4.5E-11 1.5E-15 102.7 4.6 51 337-391 3-57 (136)
332 1wf1_A RNA-binding protein RAL 99.1 8.7E-11 3E-15 96.9 6.3 73 309-399 6-79 (110)
333 1x4g_A Nucleolysin TIAR; struc 99.1 1E-10 3.5E-15 96.3 6.6 56 334-399 23-78 (109)
334 2la4_A Nuclear and cytoplasmic 99.1 1.4E-10 4.7E-15 94.0 6.8 55 335-399 26-80 (101)
335 2cpj_A Non-POU domain-containi 99.1 9.7E-11 3.3E-15 94.7 5.7 57 333-399 12-68 (99)
336 3beg_B Splicing factor, argini 99.1 9.2E-11 3.2E-15 98.0 5.4 55 334-399 14-68 (115)
337 2jvr_A Nucleolar protein 3; RN 99.1 7.6E-11 2.6E-15 98.7 4.6 57 335-399 27-84 (111)
338 1whx_A Hypothetical protein ri 99.1 9.5E-11 3.3E-15 97.4 5.0 55 335-399 9-63 (111)
339 2hzc_A Splicing factor U2AF 65 99.1 1.1E-10 3.8E-15 91.6 5.1 60 334-399 4-70 (87)
340 2e5g_A U6 snRNA-specific termi 99.1 3.4E-10 1.1E-14 90.7 8.0 56 335-399 7-62 (94)
341 2xnq_A Nuclear polyadenylated 99.1 2.5E-10 8.5E-15 92.5 7.2 55 333-399 19-74 (97)
342 2dgt_A RNA-binding protein 30; 99.1 2.3E-10 7.9E-15 91.2 6.9 55 333-399 7-61 (92)
343 2dgu_A Heterogeneous nuclear r 99.1 2.2E-10 7.6E-15 93.3 6.9 55 333-399 8-62 (103)
344 2kvi_A Nuclear polyadenylated 99.1 1.7E-10 5.9E-15 92.9 6.1 55 333-399 7-62 (96)
345 2e5j_A Methenyltetrahydrofolat 99.1 1.7E-10 5.7E-15 93.0 5.9 58 333-399 16-73 (97)
346 1fjc_A Nucleolin RBD2, protein 99.0 7.7E-11 2.6E-15 94.5 3.7 58 333-399 13-70 (96)
347 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.2E-09 3.9E-14 89.9 10.6 75 225-322 10-91 (100)
348 2cpd_A Apobec-1 stimulating pr 99.0 5.1E-10 1.7E-14 90.4 8.3 57 333-399 12-68 (99)
349 2jvo_A Nucleolar protein 3; nu 99.0 2.3E-10 7.9E-15 94.7 6.4 55 333-399 28-82 (108)
350 2cq2_A Hypothetical protein LO 99.0 1.6E-10 5.6E-15 97.3 5.0 57 333-399 22-80 (114)
351 2dnp_A RNA-binding protein 14; 99.0 3.8E-10 1.3E-14 89.6 6.6 55 333-399 6-60 (90)
352 3egn_A RNA-binding protein 40; 99.0 2.3E-10 8E-15 98.7 4.7 60 333-399 42-109 (143)
353 2cqh_A IGF-II mRNA-binding pro 99.0 2.3E-10 7.8E-15 91.3 3.9 55 334-399 6-61 (93)
354 3tht_A Alkylated DNA repair pr 99.0 1.1E-09 3.9E-14 108.7 9.2 75 222-319 15-97 (345)
355 2e44_A Insulin-like growth fac 99.0 5.2E-10 1.8E-14 89.6 5.3 59 333-399 12-71 (96)
356 3s6e_A RNA-binding protein 39; 98.9 2.6E-09 9.1E-14 89.7 8.5 76 223-319 5-91 (114)
357 1wg1_A KIAA1579 protein, homol 98.9 7.8E-10 2.7E-14 87.6 4.9 54 335-399 4-57 (88)
358 1sjr_A Polypyrimidine tract-bi 98.9 2.2E-09 7.5E-14 95.9 7.4 57 335-399 45-101 (164)
359 1x5p_A Negative elongation fac 98.9 2.5E-09 8.6E-14 86.0 6.9 54 334-399 13-66 (97)
360 3zzy_A Polypyrimidine tract-bi 98.9 3.4E-09 1.2E-13 91.2 6.9 56 335-399 27-83 (130)
361 2pe8_A Splicing factor 45; RRM 98.9 5.2E-09 1.8E-13 86.5 7.7 62 334-399 6-73 (105)
362 2diu_A KIAA0430 protein; struc 98.8 4E-09 1.4E-13 85.8 6.0 53 334-399 6-63 (96)
363 2e5i_A Heterogeneous nuclear r 98.8 8E-09 2.7E-13 88.1 7.7 53 337-399 26-79 (124)
364 2bz2_A Negative elongation fac 98.8 7.3E-09 2.5E-13 87.5 5.5 54 334-399 37-90 (121)
365 3u1l_A PRE-mRNA-splicing facto 98.7 8.6E-09 2.9E-13 97.5 5.7 57 333-399 131-196 (240)
366 3tht_A Alkylated DNA repair pr 98.6 1.7E-08 5.7E-13 100.3 5.4 57 333-399 15-73 (345)
367 1owx_A Lupus LA protein, SS-B, 98.6 8E-08 2.7E-12 81.6 8.1 73 224-319 17-94 (121)
368 2dnr_A Synaptojanin-1; RRM dom 98.6 8.7E-08 3E-12 77.2 7.8 72 224-320 6-85 (91)
369 2d9o_A DNAJ (HSP40) homolog, s 98.6 1.5E-07 5.2E-12 77.1 8.5 45 346-399 27-71 (100)
370 3v4m_A Splicing factor U2AF 65 98.6 4.8E-08 1.6E-12 80.6 5.4 61 335-399 4-76 (105)
371 3ue2_A Poly(U)-binding-splicin 98.5 7.8E-08 2.7E-12 81.2 5.3 61 335-399 19-88 (118)
372 2dit_A HIV TAT specific factor 98.5 1.2E-07 4.2E-12 78.4 6.0 59 333-399 12-81 (112)
373 1jmt_A Splicing factor U2AF 35 98.5 2.9E-08 9.9E-13 81.7 1.6 54 341-399 20-85 (104)
374 3dxb_A Thioredoxin N-terminall 98.4 4.8E-07 1.6E-11 83.3 8.0 70 237-319 141-211 (222)
375 1ufw_A Synaptojanin 2; RNP dom 98.4 5.9E-07 2E-11 72.8 7.0 72 223-319 13-93 (95)
376 1owx_A Lupus LA protein, SS-B, 98.3 6.7E-07 2.3E-11 75.9 5.6 57 333-399 15-73 (121)
377 2l9w_A U4/U6 snRNA-associated- 98.0 1.8E-05 6.1E-10 65.6 8.1 71 225-318 21-97 (117)
378 3s6e_A RNA-binding protein 39; 97.9 9.7E-06 3.3E-10 67.8 5.3 57 335-399 6-72 (114)
379 2dhx_A Poly (ADP-ribose) polym 97.9 0.00011 3.8E-09 60.2 10.5 88 224-349 7-99 (104)
380 2dnr_A Synaptojanin-1; RRM dom 97.4 0.0002 6.9E-09 57.5 6.0 54 334-399 5-66 (91)
381 3dxb_A Thioredoxin N-terminall 97.1 0.00041 1.4E-08 63.4 5.2 48 348-399 141-192 (222)
382 1whv_A Poly(A)-specific ribonu 97.0 0.0021 7.1E-08 52.2 7.8 59 218-302 9-67 (100)
383 1ufw_A Synaptojanin 2; RNP dom 97.0 0.00031 1.1E-08 56.8 2.5 55 333-399 12-75 (95)
384 1wey_A Calcipressin 1; structu 96.9 0.0048 1.6E-07 50.6 8.7 73 225-320 5-83 (104)
385 1wwh_A Nucleoporin 35, nucleop 96.7 0.0059 2E-07 51.3 8.2 73 223-319 22-95 (119)
386 1uw4_A UPF3X; nonsense mediate 96.6 0.011 3.8E-07 47.3 8.8 70 226-310 2-72 (91)
387 2dhx_A Poly (ADP-ribose) polym 96.1 0.012 4.2E-07 48.1 6.8 57 335-399 7-64 (104)
388 3ctr_A Poly(A)-specific ribonu 96.1 0.0046 1.6E-07 50.3 4.0 51 226-302 7-57 (101)
389 1whv_A Poly(A)-specific ribonu 95.4 0.019 6.5E-07 46.5 4.9 52 335-399 15-66 (100)
390 3ctr_A Poly(A)-specific ribonu 94.7 0.023 7.7E-07 46.2 3.5 50 337-399 7-56 (101)
391 3pq1_A Poly(A) RNA polymerase; 94.5 0.017 5.9E-07 59.1 3.2 58 225-305 53-110 (464)
392 1uw4_A UPF3X; nonsense mediate 94.5 0.089 3E-06 42.0 6.7 56 337-396 2-59 (91)
393 3p3d_A Nucleoporin 53; structu 94.5 0.069 2.4E-06 45.5 6.2 86 226-319 8-97 (132)
394 2l08_A Regulator of nonsense t 94.1 0.074 2.5E-06 43.0 5.5 71 225-310 9-80 (97)
395 2l9w_A U4/U6 snRNA-associated- 91.4 0.51 1.7E-05 39.1 6.8 58 335-398 20-78 (117)
396 1wwh_A Nucleoporin 35, nucleop 90.6 0.43 1.5E-05 39.9 5.8 54 335-399 23-76 (119)
397 3pq1_A Poly(A) RNA polymerase; 89.8 0.13 4.4E-06 52.7 2.4 54 335-398 52-105 (464)
398 2l08_A Regulator of nonsense t 85.0 0.71 2.4E-05 37.2 3.6 58 335-396 8-67 (97)
399 3d45_A Poly(A)-specific ribonu 80.6 4 0.00014 42.0 8.2 54 223-302 438-491 (507)
400 1wey_A Calcipressin 1; structu 77.7 2.9 9.9E-05 34.0 4.8 53 336-398 5-62 (104)
401 3d45_A Poly(A)-specific ribonu 62.0 12 0.00041 38.4 6.5 51 336-399 440-490 (507)
402 3p3d_A Nucleoporin 53; structu 60.7 3.1 0.00011 35.3 1.5 60 335-399 6-79 (132)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=4.7e-30 Score=231.56 Aligned_cols=155 Identities=18% Similarity=0.354 Sum_probs=132.1
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
++...++|||+|||+++|+++|+++|+.||.|.+|.|+.++. ++.++|||||+|.+.++|..|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A 71 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-----------------TKRSRGFGFVTYATVEEVDAA 71 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC-----------------CCCccceEEEEeCCHHHHHHH
Confidence 344578999999999999999999999999999999977542 344579999999999999999
Q ss_pred HHccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCC
Q 015821 301 LAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (399)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~ 380 (399)
|.+++..|.|+.|.|.++.+....... ......++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.
T Consensus 72 ~~~~~~~~~g~~l~v~~~~~~~~~~~~---~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~ 144 (196)
T 1l3k_A 72 MNARPHKVDGRVVEPKRAVSREDSQRP---GAHLTVKKIFVGGIKEDTEEHHLRDYFEQY----GKIEVIEIMTDRGSGK 144 (196)
T ss_dssp HHTCSCEETTEECEEEECCC--------------CCSEEEEECCTTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCC
T ss_pred HhcCCCEECCEEeeeecccCccccccc---ccCCCcceEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEeecCCCCC
Confidence 988999999999999998764332211 123456899999999999999999999999 9999999999998899
Q ss_pred CccEEEEEecCHHHHHhhC
Q 015821 381 GKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 381 ~kG~AFV~F~s~e~A~~AL 399 (399)
++|||||+|.+.++|.+||
T Consensus 145 ~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 145 KRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred ccceEEEEECCHHHHHHHH
Confidence 9999999999999999985
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-29 Score=220.54 Aligned_cols=145 Identities=23% Similarity=0.369 Sum_probs=130.7
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hcc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ln 304 (399)
|+|||+|||+++|+++|+++|+.||.|.+|+|+.++ .+.++|||||+|.+.++|..|+ .+|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~------------------~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK------------------NNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC------------------C-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 689999999999999999999999999999996654 1335699999999999999999 799
Q ss_pred CceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccE
Q 015821 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~ 384 (399)
+..+.|+.|.|.++.+... ....+.++|||+|||+.+++++|+++|+.| |.|..|.++++..+|.++||
T Consensus 63 ~~~~~g~~i~v~~~~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~ 131 (166)
T 3md3_A 63 GKQIENNIVKINWAFQSQQ-------SSSDDTFNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGY 131 (166)
T ss_dssp TCEETTEECEEEECCCCCC-------CCCTTCEEEEEESCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEE
T ss_pred CCccCCCeeEEEEcCCCCC-------CCCCCCceEEECCCCCCCCHHHHHHHHhcc----CCeeEEEEEecCCCCCcceE
Confidence 9999999999999875432 223456899999999999999999999999 99999999999989999999
Q ss_pred EEEEecCHHHHHhhC
Q 015821 385 AYVLFKTRDEEWEII 399 (399)
Q Consensus 385 AFV~F~s~e~A~~AL 399 (399)
|||+|.+.++|.+||
T Consensus 132 afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 132 GFVSFTSQDDAQNAM 146 (166)
T ss_dssp EEEEESCHHHHHHHH
T ss_pred EEEEeCCHHHHHHHH
Confidence 999999999999985
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=8.4e-29 Score=216.80 Aligned_cols=145 Identities=21% Similarity=0.339 Sum_probs=130.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++|||+|||+++|+++|+++|+.||.|.+|+++.++. +|.++|||||+|.+.++|..|+ .+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~-----------------~~~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-----------------TGQSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----------------CCcceeEEEEEECCHHHHHHHHHHc
Confidence 58999999999999999999999999999999976541 3445699999999999999999 59
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG 383 (399)
|+..+.|+.|.|.++.+... ....++|||+|||..+++++|+++|+.| |.|..|+++++..+|.++|
T Consensus 65 ~~~~~~g~~l~v~~~~~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g 131 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYARPSSA---------SIRDANLYVSGLPKTMTQKELEQLFSQY----GRIITSRILVDQVTGVSRG 131 (167)
T ss_dssp TTCEETTEECEEEECCCCCG---------GGTTCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEE
T ss_pred CCCccCCceEEEEecCCCcc---------cCCCCcEEECCCCCcCCHHHHHHHHHhc----CCEeEEEEEecCCCCCccc
Confidence 99999999999999875432 2345889999999999999999999999 9999999999988899999
Q ss_pred EEEEEecCHHHHHhhC
Q 015821 384 IAYVLFKTRDEEWEII 399 (399)
Q Consensus 384 ~AFV~F~s~e~A~~AL 399 (399)
||||+|.+.++|.+||
T Consensus 132 ~afV~f~~~~~A~~A~ 147 (167)
T 1fxl_A 132 VGFIRFDKRIEAEEAI 147 (167)
T ss_dssp EEEEEESSHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHH
Confidence 9999999999999985
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=8.6e-29 Score=217.62 Aligned_cols=146 Identities=22% Similarity=0.350 Sum_probs=131.3
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+.+|+.||.|.+|+++.++. ++.++|||||+|.+.++|..|+ .
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK-----------------TGYSYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT-----------------TTEECSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC-----------------CCccceEEEEEECCHHHHHHHHHh
Confidence 368999999999999999999999999999999866541 3345699999999999999999 5
Q ss_pred ccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCc
Q 015821 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~k 382 (399)
+++..+.|+.|.|.++.+... ....++|||+|||..+++++|+++|+.| |.|..|+|+++..+|.++
T Consensus 65 l~~~~~~g~~l~v~~~~~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~ 131 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKY----GSIVQKNILRDKLTGRPR 131 (168)
T ss_dssp HTTCEETTEECEEEECCCCSS---------TTTTCEEEEESCCTTCCHHHHHHHHTSS----SCEEEEEEEECTTTCCEE
T ss_pred cCCCEeCCcEEEEEecCCCcc---------cCCCCCEEEeCCCCCCCHHHHHHhhhcC----CcEEEEEEEEcCCCCCcc
Confidence 999999999999999875432 2356899999999999999999999999 999999999998889999
Q ss_pred cEEEEEecCHHHHHhhC
Q 015821 383 GIAYVLFKTRDEEWEII 399 (399)
Q Consensus 383 G~AFV~F~s~e~A~~AL 399 (399)
|||||+|.+.++|.+||
T Consensus 132 g~afV~f~~~~~A~~A~ 148 (168)
T 1b7f_A 132 GVAFVRYNKREEAQEAI 148 (168)
T ss_dssp EEEEEEESSHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHH
Confidence 99999999999999985
No 5
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=2.3e-29 Score=221.40 Aligned_cols=145 Identities=19% Similarity=0.366 Sum_probs=128.8
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
..++|||+|||+++|+++|+++|+.||.|.+|+|++++. +|.++|||||+|.+.++|..|+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA-----------------TGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT-----------------TSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC-----------------CCCccceEEEEEccHHHHHHHHhc
Confidence 468999999999999999999999999999999865431 345679999999999999999973
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG 383 (399)
+..+.|+.|.|.++.+... ....++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|
T Consensus 65 -~~~~~g~~i~v~~~~~~~~---------~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g 130 (167)
T 2cjk_A 65 -QHILDGKVIDPKRAIPRDE---------QDKTGKIFVGGIGPDVRPKEFEEFFSQW----GTIIDAQLMLDKDTGQSRG 130 (167)
T ss_dssp -CCEETTEECCCEECCCHHH---------HHHCEEEEEEEECTTCCHHHHHHHHHTT----SCCSEEECCCSSSSSTTSE
T ss_pred -ccccCCeEcccccccchhh---------ccCCCeEEECCCCCCCCHHHHHHHHHhC----ccEEEEEEEEcCCCCccce
Confidence 6789999999998865421 2346799999999999999999999999 9999999999988899999
Q ss_pred EEEEEecCHHHHHhhC
Q 015821 384 IAYVLFKTRDEEWEII 399 (399)
Q Consensus 384 ~AFV~F~s~e~A~~AL 399 (399)
||||+|.+.++|.+||
T Consensus 131 ~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 131 FGFVTYDSADAVDRVC 146 (167)
T ss_dssp EEEEEESSHHHHHHHH
T ss_pred EEEEEECCHHHHHHHH
Confidence 9999999999999885
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=9.5e-29 Score=228.78 Aligned_cols=146 Identities=23% Similarity=0.371 Sum_probs=128.0
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+++|++||.|.+|+|++++. ++.++|||||+|.+.++|..|| .
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-----------------TRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC-----------------CCCccccccceeCCHHHHHHHHHH
Confidence 358999999999999999999999999999999977552 3456799999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCc
Q 015821 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~k 382 (399)
+|+..+.|+.|++.++...... ......+|||+|||+.+++++|+++|+.| |.|..|+|+++. +.++
T Consensus 77 ~~~~~~~g~~i~~~~~~~~~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~~~i~~d~--~~~~ 143 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQRDPSL-------RKSGVGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDE--NGSK 143 (213)
T ss_dssp HTTCEETTEECEEEECCCCTHH-------HHHCTTEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEET--TEEE
T ss_pred hhhhhcCCcccccccccccccc-------cccccccceECCcccccHHHHHHHHHhhc----CCeEEEEeeccC--CCCc
Confidence 9999999999999998653221 12245789999999999999999999999 999999999985 5589
Q ss_pred cEEEEEecCHHHHHhhC
Q 015821 383 GIAYVLFKTRDEEWEII 399 (399)
Q Consensus 383 G~AFV~F~s~e~A~~AL 399 (399)
|||||+|.+.++|.+||
T Consensus 144 g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 144 GYGFVHFETQEAAERAI 160 (213)
T ss_dssp EEEEEEESSHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHH
Confidence 99999999999999985
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=7.4e-28 Score=212.67 Aligned_cols=148 Identities=19% Similarity=0.328 Sum_probs=127.2
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.... +.++|||||+|.+.++|..|+ .
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP---------------PQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS---------------CEEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC---------------CCcceEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999987653211 135699999999999999999 5
Q ss_pred ccCceee---eeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCC
Q 015821 303 FNMAVIG---GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR 379 (399)
Q Consensus 303 lng~~l~---Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg 379 (399)
+++..+. ++.|.+.++.+... .....++|||+|||+.+++++|+++|+.| |.|..|+|+++. +|
T Consensus 67 l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~~~~~~-~g 133 (175)
T 3nmr_A 67 LHNMKVLPGMHHPIQMKPADSEKN--------NAVEDRKLFIGMISKKCTENDIRVMFSSF----GQIEECRILRGP-DG 133 (175)
T ss_dssp HTTTCCCTTCSSCCEEEECGGGCC--------SCGGGSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TS
T ss_pred hcCcEEccCCccceEEcccccccc--------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC----CCEEEEEEEECC-CC
Confidence 9998775 67788877654321 13356899999999999999999999999 999999999996 49
Q ss_pred CCccEEEEEecCHHHHHhhC
Q 015821 380 VGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 380 ~~kG~AFV~F~s~e~A~~AL 399 (399)
.++|||||+|.+.++|.+||
T Consensus 134 ~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 134 LSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp CEEEEEEEEESSHHHHHHHH
T ss_pred CEEEEEEEEECCHHHHHHHH
Confidence 99999999999999999985
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=2.8e-28 Score=223.17 Aligned_cols=154 Identities=17% Similarity=0.360 Sum_probs=129.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH-c
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~-l 303 (399)
.++|||+|||+++|+++|+++|+.||.|.+|+|++++. ++.++|||||+|.+.++|..||. |
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A~~~l 90 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV-----------------TMKHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C-----------------C-CCCSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-----------------CCccCceEEEEeCCHHHHHHHHHHc
Confidence 58899999999999999999999999999999966441 34457999999999999999995 9
Q ss_pred cCceeeeeeeEEecCCCCccCCCCC--CCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCC
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGE--DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~--~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~ 381 (399)
|+..|.|+.|.|.++.......... ........++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.+
T Consensus 91 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 91 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF----GKIKSATLARDPTTGKH 166 (216)
T ss_dssp SSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS----SCEEEEEEEECTTTCCE
T ss_pred cCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc----CCeeEEEEEecCCCCCc
Confidence 9999999999999876543211000 00012356899999999999999999999999 99999999999889999
Q ss_pred ccEEEEEecCHHHHHhhC
Q 015821 382 KGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 382 kG~AFV~F~s~e~A~~AL 399 (399)
+|||||+|.+.++|.+||
T Consensus 167 ~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp EEEEEEEESSHHHHHHHH
T ss_pred CceEEEEecCHHHHHHHH
Confidence 999999999999999985
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1.3e-27 Score=211.16 Aligned_cols=140 Identities=21% Similarity=0.444 Sum_probs=124.7
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhccc----C-------CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeC
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~----G-------~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~ 292 (399)
+.++|||+|||+++|+++|+++|+.| | .|.++.+. .++|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----------------------~~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----------------------QDKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----------------------TTTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----------------------CCCCEEEEEeC
Confidence 46899999999999999999999999 6 56666551 24699999999
Q ss_pred CHHHHHHHHHccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEE
Q 015821 293 SEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRV 372 (399)
Q Consensus 293 s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI 372 (399)
+.++|..|+.+|+..|.|+.|.|.++..... ....++|||+|||+.+++++|+++|++| |.|..|+|
T Consensus 60 ~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~---------~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i 126 (172)
T 2g4b_A 60 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---------LPGAHKLFIGGLPNYLNDDQVKELLTSF----GPLKAFNL 126 (172)
T ss_dssp SHHHHHHHGGGTTCEETTEECEEECCSSCCC---------CTTTTCEEEECCCTTCCHHHHHHHHHTT----SCEEEEEE
T ss_pred CHHHHHHHHHhCCcEecCceeeecCCcccCC---------CCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCceEEEE
Confidence 9999999999999999999999998764321 2346899999999999999999999999 99999999
Q ss_pred eecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 373 IRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 373 ~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++++.+|.++|||||+|.+.++|.+||
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 127 VKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp EECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 999888999999999999999999885
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=3.1e-27 Score=213.35 Aligned_cols=149 Identities=21% Similarity=0.407 Sum_probs=125.6
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccC-----------CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeC
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-----------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G-----------~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~ 292 (399)
.+++|||+|||+++|+++|+++|+.|| .|..+.+ +.++|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----------------------~~~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----------------------NQDKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----------------------ETTTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----------------------cCCCCEEEEEeC
Confidence 478999999999999999999999995 4444443 234699999999
Q ss_pred CHHHHHHHHHccCceeeeeeeEEecCCCCccCCCCC-----------CCCccCcccceeecCCCCCCCHHHHHHHhhccC
Q 015821 293 SEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGE-----------DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLN 361 (399)
Q Consensus 293 s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~-----------~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~ 361 (399)
+.++|..||.||+..|.|+.|.|.++.+........ ........++|||+|||+.+++++|+++|+.|
T Consensus 60 ~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~- 138 (198)
T 2yh0_A 60 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF- 138 (198)
T ss_dssp CSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB-
T ss_pred CHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc-
Confidence 999999999999999999999999986542211100 01112467899999999999999999999999
Q ss_pred CCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 362 DLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 362 ~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|.|..|+|+++..+|.++|||||+|.+.++|.+||
T Consensus 139 ---G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 173 (198)
T 2yh0_A 139 ---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 173 (198)
T ss_dssp ---SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHH
T ss_pred ---CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHH
Confidence 99999999999888999999999999999999885
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=1e-26 Score=215.26 Aligned_cols=148 Identities=13% Similarity=0.215 Sum_probs=123.6
Q ss_pred CcCEEEEecCC-CCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 224 LLRTIFVGNLP-LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 224 ~~rtVfVgNLP-~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
..++|||+||| +.+|+++|+.+|+.||.|.+|+|+.+ ++|||||+|.+.++|+.||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------------------KPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 46899999999 89999999999999999999998432 2489999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCccCCCC-----C-----------------------CCCccCcccceeecCCCCCCCHHHH
Q 015821 302 AFNMAVIGGNHIRLDRACPPRKKLKG-----E-----------------------DAPLYDIKKTVFVGNLPFDVKDEEI 353 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~-----~-----------------------~~~~~~~~~tLfV~NLp~~~teedL 353 (399)
.|||..|.|+.|.|.++......... + ......+.++|||+|||+.+++++|
T Consensus 61 ~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L 140 (205)
T 3tyt_A 61 HLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 140 (205)
T ss_dssp HHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHH
T ss_pred HhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHH
Confidence 59999999999999998643210000 0 0001245678999999999999999
Q ss_pred HHHhhccCCCCCCe--EEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 354 YQLFCGLNDLESSV--EAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 354 ~~~Fs~f~~~~G~I--~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+++|++| |.| ..|+|+.+. |.++|||||+|.+.++|..||
T Consensus 141 ~~~F~~~----G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 141 FEICDEL----GVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp HHHHHHH----TCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHH
T ss_pred HHHHHhc----CCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHH
Confidence 9999999 888 899998874 566799999999999999986
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=4.9e-27 Score=208.61 Aligned_cols=145 Identities=21% Similarity=0.334 Sum_probs=122.7
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.+...++|||+|||+++|+++|+.+|..||.|..+.+... .++.++|||||+|.+.++|..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~------------------~~~~~~g~afV~f~~~~~a~~A 70 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV------------------RTGTNRKFGYVDFESAEDLEKA 70 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEE------------------EEETTTTEEEEEESSHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEEC------------------CCCccccEEEEEECCHHHHHHH
Confidence 3455799999999999999999999999998765322111 2345679999999999999999
Q ss_pred HHccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCC
Q 015821 301 LAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (399)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~ 380 (399)
|+||+..|.|+.|.|.++.+... ......++|||+|||+.+++++|+++|+.| |.|..+ ..+|.
T Consensus 71 ~~l~g~~~~g~~l~v~~~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~-----~~~~~ 134 (175)
T 1fje_B 71 LELTGLKVFGNEIKLEKPKGRDS-------KKVRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-----SQDGK 134 (175)
T ss_dssp HHGGGEEETTEEEEEECCCCSSC-------STTGGGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEE-----CSSSS
T ss_pred HhcCCCEeCCeEEEEecCCCccc-------cccccCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEe-----cCCCC
Confidence 99999999999999999876432 123466899999999999999999999999 877765 45689
Q ss_pred CccEEEEEecCHHHHHhhC
Q 015821 381 GKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 381 ~kG~AFV~F~s~e~A~~AL 399 (399)
++|||||+|.+.++|.+||
T Consensus 135 ~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp CCSEEEEECSSHHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHH
Confidence 9999999999999999985
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=2.2e-26 Score=221.32 Aligned_cols=138 Identities=20% Similarity=0.286 Sum_probs=118.2
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
+...++|||+|||+++|+++|+.+|+.||.|.+|+|+.++. .++|||||+|.+.++|..||
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~A~~A~ 98 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-------------------KNFRFARIEFARYDGALAAI 98 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-------------------SSSEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-------------------CCcEEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999999976541 13599999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCC-CeEEEEEeecCCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRV 380 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G-~I~~VrI~~d~~tg~ 380 (399)
.+|+..|.|+.|.|.++. .++|||+|||+.+++++|+++|+.| | .|..|+|+++.. |.
T Consensus 99 ~~~~~~~~g~~i~v~~~~----------------~~~l~v~nlp~~~t~~~l~~~f~~~----G~~i~~v~i~~~~~-~~ 157 (292)
T 2ghp_A 99 TKTHKVVGQNEIIVSHLT----------------ECTLWMTNFPPSYTQRNIRDLLQDI----NVVALSIRLPSLRF-NT 157 (292)
T ss_dssp TTTTCEETTEECEEEECC----------------SCEEEEECCCTTCCHHHHHHHHHHT----TCCCCEEECC-------
T ss_pred HhCCcEeCCcEEEEEECC----------------CCEEEEECCCCCCCHHHHHHHHHHh----CCCeEEEEEEeCCC-CC
Confidence 999999999999999863 4899999999999999999999999 8 999999999876 88
Q ss_pred CccEEEEEecCHHHHHhhC
Q 015821 381 GKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 381 ~kG~AFV~F~s~e~A~~AL 399 (399)
++|||||+|.+.++|..||
T Consensus 158 ~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 158 SRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp -CCEEEEECSSHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 9999999999999999885
No 14
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=5e-26 Score=216.92 Aligned_cols=135 Identities=23% Similarity=0.323 Sum_probs=124.4
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|.+|.|.+ ++|||||.|.+.++|..|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----------------------~kg~afV~f~~~~~A~~A~ 75 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----------------------DRGFGFIRLESRTLAEIAK 75 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCcEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999998832 3589999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~ 380 (399)
.+|+..|.|+.|.|.++.+ ..+|||+|||+.+++++|+++|+.| |.|..|.|+++ .+|.
T Consensus 76 ~~l~g~~i~g~~l~v~~a~~---------------~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~-~~g~ 135 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFATH---------------GAALTVKNLSPVVSNELLEQAFSQF----GPVEKAVVVVD-DRGR 135 (261)
T ss_dssp HHHTTCEETTEECEEEECCC---------------SSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEE-TTSC
T ss_pred HHcCCcEECCceeEeeeccc---------------CCcccccCCCCCCCHHHHHHHHHhc----CCeEEEEeeeC-CCCC
Confidence 5999999999999999863 4789999999999999999999999 99999999999 5799
Q ss_pred CccEEEEEecCHHHHHhhC
Q 015821 381 GKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 381 ~kG~AFV~F~s~e~A~~AL 399 (399)
++|||||+|.+.++|.+||
T Consensus 136 ~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred cCcEEEEEeCCHHHHHHHH
Confidence 9999999999999999985
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=8.5e-26 Score=217.19 Aligned_cols=152 Identities=16% Similarity=0.261 Sum_probs=126.0
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G-~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
..++|||+|||+.+|+++|+.+|+.|| .|..|+|+.++. +.++|||||+|.+.++|..|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~------------------~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF------------------NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC------------------CCcceEEEEEECCHHHHHHHHH
Confidence 478999999999999999999999999 999999865431 3456999999999999999995
Q ss_pred -ccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCC-CCHHHHHHHhhccCCCCCCeEEEEEeecCC-CC
Q 015821 303 -FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPH-MR 379 (399)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~-~teedL~~~Fs~f~~~~G~I~~VrI~~d~~-tg 379 (399)
||+..|.|+.|.|.++.+....... .......++|||+|||+. +++++|+++|+.| |.|..|+|+++.. ||
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~tg 251 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGF----GSIEKINIPAGQKEHS 251 (292)
T ss_dssp HHTTCEETTEECEEEECCCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGG----SCEEEEECCSCCC---
T ss_pred HhCCCEeCCcEEEEEECCCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhcc----CCeeEEEEEecCCcCC
Confidence 9999999999999998865433222 122446789999999999 9999999999999 9999999999876 69
Q ss_pred CCccEEEEEecCHHHHHhhC
Q 015821 380 VGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 380 ~~kG~AFV~F~s~e~A~~AL 399 (399)
.++|||||+|.+.++|.+||
T Consensus 252 ~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 252 FNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp CCCEEEEEEESSHHHHHHHG
T ss_pred CCceEEEEEeCCHHHHHHHH
Confidence 99999999999999999986
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=2.1e-25 Score=213.63 Aligned_cols=148 Identities=13% Similarity=0.121 Sum_probs=130.7
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+.+|+++|+.+|+.||.|..|+++.++. +|.++|||||+|.+.++|..|+ .
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER-----------------TGQSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC-----------------CCccceEEEEEECCHHHHHHHHHH
Confidence 357899999999999999999999999999999866542 3446799999999999999999 7
Q ss_pred ccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCC-CHHHHHHHhhccCCCCCCeEEEEEeecCCCCCC
Q 015821 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDV-KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~-teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~ 381 (399)
+++..|.|+.|.|.++.+.... +.....++|||+|||+.+ ++++|+++|+.| |.|..|+|+++. +|.+
T Consensus 157 l~~~~~~g~~i~v~~a~~~~~~------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~----G~i~~v~i~~~~-~g~~ 225 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDAGQLT------PALLHSRCLCVDRLPPGFNDVDALCRALSAV----HSPTFCQLACGQ-DGQL 225 (284)
T ss_dssp HTTCEETTEECEEEECCGGGCC------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS----SCCSEEEEEECS-SCCE
T ss_pred hCCCEeCCcEEEEEECCCCCCC------cccCCccEEEEecCCcccCCHHHHHHHhhCC----CCeEEEEEEECC-CCCc
Confidence 9999999999999999764321 223456899999999995 999999999999 999999999997 6999
Q ss_pred ccEEEEEecCHHHHHhhC
Q 015821 382 KGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 382 kG~AFV~F~s~e~A~~AL 399 (399)
+|||||+|.+.++|.+||
T Consensus 226 ~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 226 KGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp EEEEEEECSSHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHH
Confidence 999999999999999985
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=2.3e-25 Score=213.41 Aligned_cols=132 Identities=16% Similarity=0.263 Sum_probs=122.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
+++|||+|||+++|+++|+++|+.|| |.+|.+ +.++|||||+|.+.++|..|+ .+
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----------------------~~~~g~afV~f~~~~~A~~A~~~l 77 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----------------------DKYKGTAFVTLLNGEQAEAAINAF 77 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----------------------ETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----------------------ecCCCEEEEEeCCHHHHHHHHHHc
Confidence 68999999999999999999999999 888877 124599999999999999999 69
Q ss_pred cCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG 383 (399)
|+..|.|+.|.|.++. ..++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|
T Consensus 78 ~~~~~~g~~i~v~~~~---------------~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g 138 (284)
T 3smz_A 78 HQSRLRERELSVQLQP---------------TDALLCVANLPPSLTQQQFEELVRPF----GSLERCFLVYSERTGQSKG 138 (284)
T ss_dssp TTCEETTEECEEEECC---------------CSCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEE
T ss_pred CCCeeCCeEEEEEecC---------------CCCEEEEcCCCCcCCHHHHHHHHHhc----CCeeEEEEEeeCCCCccce
Confidence 9999999999999853 23799999999999999999999999 9999999999998999999
Q ss_pred EEEEEecCHHHHHhhC
Q 015821 384 IAYVLFKTRDEEWEII 399 (399)
Q Consensus 384 ~AFV~F~s~e~A~~AL 399 (399)
||||+|.+.++|.+||
T Consensus 139 ~afV~f~~~~~a~~A~ 154 (284)
T 3smz_A 139 YGFAEYMKKDSAARAK 154 (284)
T ss_dssp EEEEEESSHHHHHHHH
T ss_pred EEEEEECCHHHHHHHH
Confidence 9999999999999885
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.92 E-value=1e-24 Score=208.66 Aligned_cols=149 Identities=22% Similarity=0.304 Sum_probs=123.1
Q ss_pred CCCcCEEEEecCCCCCcHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~----~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A 297 (399)
....++|||+|||+++|+++|+ ++|+.||.|.+|+|++ ++.++|||||+|.+.++|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--------------------~~~~~g~afV~f~~~~~a 65 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--------------------SLKMRGQAFVIFKEVSSA 65 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--------------------CCCcceEEEEEECCHHHH
Confidence 3457999999999999999966 8999999999998843 234569999999999999
Q ss_pred HHHH-HccCceeeeeeeEEecCCCCccCCC---C----------------------------------------------
Q 015821 298 EAAL-AFNMAVIGGNHIRLDRACPPRKKLK---G---------------------------------------------- 327 (399)
Q Consensus 298 ~~Al-~lng~~l~Gr~I~V~~a~~~~k~~~---~---------------------------------------------- 327 (399)
..|| .|||..|.|+.|.|.++........ +
T Consensus 66 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (282)
T 3pgw_A 66 TNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMP 145 (282)
T ss_pred HHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCC
Confidence 9999 7999999999999999854321000 0
Q ss_pred -----------------------------------------------------CCCCccCcccceeecCCCCCCCHHHHH
Q 015821 328 -----------------------------------------------------EDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (399)
Q Consensus 328 -----------------------------------------------------~~~~~~~~~~tLfV~NLp~~~teedL~ 354 (399)
.......+.++|||+|||..+++++|+
T Consensus 146 ~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 225 (282)
T 3pgw_A 146 PMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLS 225 (282)
T ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHH
Confidence 000112356889999999999999999
Q ss_pred HHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 355 ~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++|+.| |.|..|+|+.+. +|||||+|.+.++|.+||
T Consensus 226 ~~F~~~----G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~ 261 (282)
T 3pgw_A 226 MLFNQF----PGFKEVRLVPGR-----HDIAFVEFDNEVQAGAAR 261 (282)
T ss_pred HHHHhc----CCeEEEEEecCC-----CcEEEEEeCCHHHHHHHH
Confidence 999999 999999998653 589999999999999985
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=6.7e-25 Score=199.12 Aligned_cols=144 Identities=18% Similarity=0.303 Sum_probs=121.1
Q ss_pred cCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 225 LRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 225 ~rtVfVgNLP~-~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
+++|||+|||+ .+|+++|+.+|+.||.|.+|++++++ +|||||+|.+.++|..|+ .
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------------------~g~afV~f~~~~~a~~A~~~ 60 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAMSH 60 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------------------SSCCEEECTTTHHHHHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHHH
Confidence 58999999999 99999999999999999999884421 489999999999999999 5
Q ss_pred ccCceeeeeeeEEecCCCCccCCCC--------------------------CCCCccCcccceeecCCCCCCCHHHHHHH
Q 015821 303 FNMAVIGGNHIRLDRACPPRKKLKG--------------------------EDAPLYDIKKTVFVGNLPFDVKDEEIYQL 356 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~--------------------------~~~~~~~~~~tLfV~NLp~~~teedL~~~ 356 (399)
||+..|.|+.|.|.++.+....... .......+.++|||+|||..+++++|+++
T Consensus 61 l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 140 (198)
T 1qm9_A 61 LNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 140 (198)
T ss_dssp HTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHH
T ss_pred hCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHH
Confidence 9999999999999998643211000 00011345789999999999999999999
Q ss_pred hhccCCCCC-CeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 357 FCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 357 Fs~f~~~~G-~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|+.| | .|..|+|+.+ .+|||||+|.+.++|.+||
T Consensus 141 f~~~----G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~ 175 (198)
T 1qm9_A 141 FSSN----GGVVKGFKFFQK-----DRKMALIQMGSVEEAVQAL 175 (198)
T ss_dssp HHHT----TSCCCEEEESST-----TSSCEEEECSSHHHHHHHH
T ss_pred HHHc----CCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHH
Confidence 9999 8 9999999764 2789999999999999985
No 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=1.9e-24 Score=201.95 Aligned_cols=146 Identities=18% Similarity=0.301 Sum_probs=122.1
Q ss_pred CCcCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~-~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
...++|||+|||+ ++|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|..|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHHH
Confidence 3478999999999 99999999999999999999985432 489999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCccCCCC----C-------------C---------CCccCcccceeecCCCCCCCHHHHH
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRKKLKG----E-------------D---------APLYDIKKTVFVGNLPFDVKDEEIY 354 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k~~~~----~-------------~---------~~~~~~~~tLfV~NLp~~~teedL~ 354 (399)
.||+..|.|+.|.|.++.+....... . . .....+.++|||+|||+.+++++|+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred HHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 59999999999999998643110000 0 0 0112356899999999999999999
Q ss_pred HHhhccCCCCC-CeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 355 QLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 355 ~~Fs~f~~~~G-~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++|+.| | .|..|+|+.+ .+|||||+|.+.++|.+||
T Consensus 170 ~~f~~~----G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 170 VLFSSN----GGVVKGFKFFQK-----DRKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp HHHHTT----SCCEEEEEECSS-----STTCEEEEESSHHHHHHHH
T ss_pred HHHHHc----CCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHH
Confidence 999999 9 9999999653 3789999999999999985
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=5.7e-21 Score=160.53 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=71.3
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
...+|||+|||+++|+++|+++|+.||.|.+|+|+++. +.++|||||+|.+.++|+.|| .
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-------------------~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-------------------NGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-------------------TEEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-------------------CCCCceEEEEECCHHHHHHHHHH
Confidence 35789999999999999999999999999999997653 124699999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHH
Q 015821 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEE 352 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teed 352 (399)
||+..|.|+.|.|.++.+....... .........+|||+|||+++|++-
T Consensus 65 l~~~~~~g~~i~V~~a~~~~~~~~~-~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 65 MNGMLLNDRKVFVGRFKSRKEREAE-LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HTTCEETTEECEEEESSCCCC-----------------------------
T ss_pred cCCCEECCEEEEEEECCCccccccc-cccccCCCCceEeCCCCCCccccc
Confidence 9999999999999998764322211 111223446799999999999763
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=139.07 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=71.9
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
+.++|||+|||+++|+++|+++|+.||.|.+|+|++++. +|.++|||||+|.+.++|..|+ .
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV-----------------AGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-----------------SCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC-----------------CCcccccEEEEECCHHHHHHHHHH
Confidence 357899999999999999999999999999999977542 3456799999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCC
Q 015821 303 FNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (399)
|||..|.|+.|.|.++.|
T Consensus 81 lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 81 LNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HTTCEETTEECEEEECCB
T ss_pred hCCCEECCEEEEEEEeeC
Confidence 999999999999999864
No 23
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.4e-17 Score=146.37 Aligned_cols=111 Identities=12% Similarity=0.120 Sum_probs=84.9
Q ss_pred CCceeEEEeeCCHHHHHHHH-HccCceeeeeeeEEe-------cCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHH
Q 015821 282 ADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLD-------RACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEI 353 (399)
Q Consensus 282 ~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~-------~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL 353 (399)
+++|||||+|.+.++|++|+ .+++....+..+.+. ........ .........++|||+|||+.+++++|
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~nl~~~~~~~~l 87 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHH---HHHMDVEGMTSLKVDNLTYRTSPDTL 87 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCS---SCCCCCCBCCEEEEESCCTTCCHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccccccc---ccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 46799999999999999999 455432222222222 21111110 11122345789999999999999999
Q ss_pred HHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 354 YQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 354 ~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||
T Consensus 88 ~~~F~~~----G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 129 (158)
T 2kn4_A 88 RRVFEKY----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 129 (158)
T ss_dssp HHHHHHH----SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHH
T ss_pred HHHHHhc----CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 9999999 99999999999889999999999999999999885
No 24
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=133.40 Aligned_cols=98 Identities=21% Similarity=0.368 Sum_probs=81.3
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hcc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ln 304 (399)
++|||+|||+++|+++|+.+|+.||.|.+|.|+.+ ++|||||+|.+.++|..|+ .||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 47999999999999999999999999999998543 2489999999999999999 599
Q ss_pred CceeeeeeeEEecCCCCccCCCCCCC-CccCcccceeecCCC
Q 015821 305 MAVIGGNHIRLDRACPPRKKLKGEDA-PLYDIKKTVFVGNLP 345 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~~-~~~~~~~tLfV~NLp 345 (399)
+..|.|+.|.|.++.+.......... .......+|||+||+
T Consensus 59 g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 59 GKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp HSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 99999999999999876543332221 223346899999997
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=134.08 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=69.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH-
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G-~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~- 302 (399)
+++|||+|||+++|+++|+++|+.|| .|.+|+|++++ . ++.++|||||+|.+.++|.+||.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~--~---------------t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK--S---------------SGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS--S---------------SCCCSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC--C---------------CCCcCceEEEEecCHHHHHHHHHh
Confidence 47899999999999999999999999 79999886644 2 34567999999999999999995
Q ss_pred c-cCceeeeeeeEEecCCCCc
Q 015821 303 F-NMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 303 l-ng~~l~Gr~I~V~~a~~~~ 322 (399)
+ ++..|.|+.|.|.++.++.
T Consensus 64 ~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp TTTEEEETTEEEEEECCCSCC
T ss_pred cCCCeEECCEEEEEEEcCCCC
Confidence 5 5668999999999997654
No 26
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=2.4e-17 Score=137.46 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=88.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+.+|+++|+.+|+.||.|.+|.|+.+. .++|||||+|.+.++|..|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--------------------ETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--------------------TTTTCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--------------------CCCcEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999985422 23699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccC
Q 015821 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLN 361 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~ 361 (399)
.|||..|.|+.|.|.++.+.... ++++...++++|..+|+.|+
T Consensus 66 ~l~g~~~~g~~l~v~~a~~~~~~-----------------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 66 HLSGFNVSNRYLVVLYYNANRAF-----------------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp HHTTCBSSSCBCEEEECCHHHHT-----------------TTSCHHHHHHHHHHHHHHHC
T ss_pred HcCCCEECCeEEEEEEecCChhh-----------------hhhhHhHhHHHHHHHHHHhC
Confidence 49999999999999998754321 56778889999999999993
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=133.67 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=73.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+++|++||.|.+|.|++++. ++.++|||||+|.+.++|+.|+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~-----------------tg~~rG~aFV~f~~~~~A~~Ai~ 66 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR-----------------TRKHLGLARVLFTSTRGAKETVK 66 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC-----------------CCceeeEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999977652 3456799999999999999999
Q ss_pred HccCceeeeeeeEEecCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|||..|.|+.|.|.++...
T Consensus 67 ~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 67 NLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHTTCEETTEECEEEECSTT
T ss_pred HhCCCEECCeEEEEEECCCC
Confidence 69999999999999998643
No 28
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=133.13 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=74.4
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|..|.|+.+. ++.++|||||+|.+.++|+.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~F~~~~~A~~Ai~ 66 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR------------------TSKSRGFAFITFENPADAKNAAK 66 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST------------------TTTCCCEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCcccEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999996543 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCccCC
Q 015821 302 AFNMAVIGGNHIRLDRACPPRKKL 325 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~ 325 (399)
.||+..|.|+.|.|.++.++....
T Consensus 67 ~l~g~~~~g~~l~V~~a~~~~~~~ 90 (116)
T 2fy1_A 67 DMNGKSLHGKAIKVEQAKKPSFQS 90 (116)
T ss_dssp HCSSCBCSSSBCEEEECCCSSCSS
T ss_pred HhCCCEECCEEEEEEECCCCCCCC
Confidence 599999999999999998765433
No 29
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.4e-16 Score=126.14 Aligned_cols=80 Identities=29% Similarity=0.397 Sum_probs=71.1
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|++||.|.+|+|++++. ++.++|||||+|.+.++|..|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-----------------TGRSRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-----------------TCCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-----------------CCccccEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999976542 2445799999999999999999
Q ss_pred HccCceeeeeeeEEecC
Q 015821 302 AFNMAVIGGNHIRLDRA 318 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a 318 (399)
.+++..|.|+.|.|.++
T Consensus 71 ~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 71 DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HSSCEEETTEEEEEEEC
T ss_pred HhCCCEECCEEEEEEeC
Confidence 98999999999999875
No 30
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=128.41 Aligned_cols=84 Identities=26% Similarity=0.400 Sum_probs=74.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...++|||+|||+++|+++|+.+|+.||.|..|+|+.++. ++.++|||||+|.+.++|..||.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE-----------------KQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT-----------------TCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----------------CCCCCceEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999966542 23456999999999999999999
Q ss_pred ccCceeeeeeeEEecCCCCcc
Q 015821 303 FNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k 323 (399)
+|+..|.|+.|.|.++.++..
T Consensus 71 ~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 71 MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp HCCCBSSSCBCEEEECCCCCC
T ss_pred hCCCEECCeEEEEEECCCCcc
Confidence 999999999999999986543
No 31
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=2e-16 Score=123.84 Aligned_cols=79 Identities=20% Similarity=0.307 Sum_probs=70.9
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hcc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ln 304 (399)
.+|||+|||+++|+++|+.+|+.||.|.+|.+++++. ++.++|||||+|.+.++|..|+ .||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-----------------TGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-----------------TCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-----------------CCCccceEEEEECCHHHHHHHHHHhc
Confidence 5799999999999999999999999999999976542 2345699999999999999999 599
Q ss_pred CceeeeeeeEEecCCCC
Q 015821 305 MAVIGGNHIRLDRACPP 321 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (399)
|..|.|+.|.|.++.+.
T Consensus 65 g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 65 GQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TCEETTEECEEEECCCC
T ss_pred CCeeCCcEEEEEecCcC
Confidence 99999999999999754
No 32
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.1e-17 Score=133.16 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=71.5
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...++|||+|||+++|+++|+++|+.||.|.+|+|++++. +.++|||||+|.+.++|..||.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~------------------g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH------------------KAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT------------------TSCCCEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC------------------CCCccEEEEEECCHHHHHHHHH
Confidence 3468899999999999999999999999999999976541 3456999999999999999999
Q ss_pred ccCceeeeeeeEEecCCC
Q 015821 303 FNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (399)
+++..|.|+.|.|.++..
T Consensus 71 ~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 71 TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SSCCCCTTTTCEEEEHHH
T ss_pred cCCCEECCEEEEEEEchH
Confidence 999999999999998653
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=128.29 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=74.7
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
+....++|||+|||+++|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A 73 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT-----------------TGQSKGFAFISFHRREDAARA 73 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS-----------------SCSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC-----------------CCceeeEEEEEECCHHHHHHH
Confidence 345579999999999999999999999999999999976542 234569999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCCc
Q 015821 301 L-AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~ 322 (399)
| .||+..|.|+.|.|.++.+..
T Consensus 74 ~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 74 IAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHHTTTCEETTEECEEEESSCCC
T ss_pred HHHcCCCeeCCcEEEEEECCCCC
Confidence 9 599999999999999997654
No 34
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=126.79 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=74.0
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL-----------------TKKPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTT-----------------TCCCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC-----------------CCCcCeEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999999865431 3445699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCcc
Q 015821 302 AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.||+..|.|+.|.|.++.+...
T Consensus 69 ~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp HTTTEESSSCEEEEEECCCCST
T ss_pred HhCCCEECCcEEEEEEcCCCcc
Confidence 7999999999999999987543
No 35
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=6.6e-17 Score=129.43 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=67.1
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccC--CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G--~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
.+|||+|||+++|+++|+++|+.|| .|.+|+|+.++. +|.++|||||+|.+.++|..|+ .
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~-----------------~g~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-----------------NGQSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT-----------------TCCEEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC-----------------CCccCcEEEEEECCHHHHHHHHHH
Confidence 5799999999999999999999999 999999977542 3456799999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCCCc
Q 015821 303 FNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (399)
|||..|.|+.|.|.++.++.
T Consensus 65 l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp GGGSCSSSCCCEECCC----
T ss_pred cCCCeeCCEEEEEEECCCCc
Confidence 99999999999999997653
No 36
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=124.56 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=70.6
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+.+|+.||.|.+|.|+.++. ++.++|||||+|.+.++|..|+ .
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA-----------------TGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC-----------------CCccceEEEEEECCHHHHHHHHHH
Confidence 468899999999999999999999999999999976542 2345699999999999999999 5
Q ss_pred ccCceeeeeeeEEecCCC
Q 015821 303 FNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (399)
||+..|.|+.|.|.++.+
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HTTCEETTEECEEEEEC-
T ss_pred cCCCEECCeEEEEEecCC
Confidence 999999999999999864
No 37
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=1.1e-16 Score=139.80 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=90.2
Q ss_pred CCceeEEEeeCCHHHHHHHH-Hc-cCceeeeeeeEEecCCCCccCC-------CCCCCCccCcccceeecCCCCCCCHHH
Q 015821 282 ADSVHAYIVFKSEQSTEAAL-AF-NMAVIGGNHIRLDRACPPRKKL-------KGEDAPLYDIKKTVFVGNLPFDVKDEE 352 (399)
Q Consensus 282 ~skG~AFV~F~s~e~A~~Al-~l-ng~~l~Gr~I~V~~a~~~~k~~-------~~~~~~~~~~~~tLfV~NLp~~~teed 352 (399)
..+|+++|+|.+.++|++|+ .+ |+..+.| .|.+.++....... .........+.++|||+|||+.+++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 45699999999999999999 68 9999999 99999886421110 011122345679999999999999999
Q ss_pred HHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 353 L~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|+++|++| |.|..|+|+++ ++|||||+|.+.++|..||
T Consensus 90 l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 90 LERAFGYY----GPLRSVWVARN-----PPGFAFVEFEDPRDAADAV 127 (150)
T ss_dssp HHHHHHHH----SCEEEEEECSS-----SCSEEEEEESSHHHHHHHH
T ss_pred HHHHHHhh----CCEEEEEEeeC-----CCcEEEEEECCHHHHHHHH
Confidence 99999999 99999999876 5899999999999999885
No 38
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=7.2e-16 Score=128.46 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=75.1
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
+....++|||+|||+.+|+++|+.+|+.||.|..|+|++++. ++.++|||||+|.+.++|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A 73 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA-----------------TGKSKGYGFVSFFNKWDAENA 73 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----------------CCCcceEEEEEECCHHHHHHH
Confidence 344578999999999999999999999999999999976542 234569999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCCcc
Q 015821 301 L-AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~k 323 (399)
| .||+..|.|+.|.|.++.+...
T Consensus 74 ~~~l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 74 IQQMGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp HHHTTTCEETTEECEEEESSCCCC
T ss_pred HHHhCCCEECCEEEEEEEccCCCC
Confidence 9 5999999999999999976543
No 39
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=3.1e-16 Score=124.33 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=72.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
.++|||+|||+++|+++|+++|+.||.|.+|+++.++. ++.++|||||+|.+.++|..|+.+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~a~~~~ 68 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF-----------------SGHPKGFAYIEFSDKESVRTSLALD 68 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS-----------------SSSCCEEEEEEESSTHHHHHHGGGT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHHhcC
Confidence 68999999999999999999999999999999976542 2345699999999999999999999
Q ss_pred CceeeeeeeEEecCCCC
Q 015821 305 MAVIGGNHIRLDRACPP 321 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (399)
+..|.|+.|.|.++.++
T Consensus 69 g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 69 ESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TCEETTEECEEEETTTT
T ss_pred CCEECCcEEEEEEccCC
Confidence 99999999999998754
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.6e-16 Score=125.02 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=73.0
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|+ .
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD-----------------TGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS-----------------SCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC-----------------CCceeeEEEEEECCHHHHHHHHHH
Confidence 478999999999999999999999999999999966542 2345699999999999999999 5
Q ss_pred ccCceeeeeeeEEecCCCCc
Q 015821 303 FNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (399)
||+..|.|+.|.|.++.++.
T Consensus 67 l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HTTCCSSSSCCEEEESSCCC
T ss_pred hCCCeeCCcEEEEEEccccc
Confidence 99999999999999997654
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=2.6e-16 Score=123.79 Aligned_cols=79 Identities=28% Similarity=0.429 Sum_probs=70.7
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+++|+.||.|..|.|++++. ++.++|||||+|.+.++|..|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----------------TEKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT-----------------TTEECSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC-----------------CCccccEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999876542 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecC
Q 015821 302 AFNMAVIGGNHIRLDRA 318 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a 318 (399)
.||+..|.|+.|.|.++
T Consensus 68 ~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 68 NMNESELFGRTIRVNLA 84 (85)
T ss_dssp HHTTCEETTEECEEEEC
T ss_pred HhCCCEECCcEEEEEEc
Confidence 79999999999999986
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.6e-16 Score=126.50 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=73.4
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|..|+|+.++ ++.++|||||+|.+.++|..|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR------------------AGKPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT------------------TSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC------------------CCCEEeEEEEEECCHHHHHHHH
Confidence 3446889999999999999999999999999999996643 2345699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.++.
T Consensus 76 ~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 76 MKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp HHHTTEESSSCEEEEEECCCCS
T ss_pred HHhCCCEECCEEEEEEECCCCC
Confidence 799999999999999997653
No 43
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=127.44 Aligned_cols=86 Identities=23% Similarity=0.369 Sum_probs=74.8
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.....++|||+|||+++|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A 73 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV-----------------TGQHQGYGFVEFLSEEDADYA 73 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-----------------SCSBCSCEEEEESSHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCcCCcEEEEEECCHHHHHHH
Confidence 345578999999999999999999999999999999865441 234569999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCCcc
Q 015821 301 L-AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~k 323 (399)
| .||+..|.|+.|.|.++.+...
T Consensus 74 ~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 74 IKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp HHHSSSCBCSSCBCEEEETTTTSC
T ss_pred HHHhCCCeECCeEEEEEECCCCCc
Confidence 9 5999999999999999986543
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=124.84 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=72.9
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.+...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A 73 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-----------------SRRSRGFAFVYFENVDDAKEA 73 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS-----------------SSSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-----------------CCCcccEEEEEECCHHHHHHH
Confidence 345578999999999999999999999999999999976542 234569999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCC
Q 015821 301 L-AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~ 320 (399)
+ .||+..|.|+.|.|.++.+
T Consensus 74 ~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 74 KERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHHTTEEETTEEEEEECCSC
T ss_pred HHHhCCCEECCEEEEEEecCC
Confidence 9 5999999999999999853
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=129.99 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=68.7
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCC--eeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE--IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~--I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
.-.||||+|||+.+|+++|+++|++||. |.+|+|++++. ++.++|||||+|.+.++|+.||
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~-----------------tg~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQ-----------------TQQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSS-----------------SSSCSSEEEEECSSSHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCC-----------------CCCCceEeEEEECCHHHHHHHH
Confidence 4678999999999999999999999995 56788866542 3456799999999999999999
Q ss_pred -HccCc----eeeeeeeEEecCCC
Q 015821 302 -AFNMA----VIGGNHIRLDRACP 320 (399)
Q Consensus 302 -~lng~----~l~Gr~I~V~~a~~ 320 (399)
.||+. .++|+.|.|.++.+
T Consensus 71 ~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 71 QILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHhcCCCCCceECCEEEEEEEccC
Confidence 68886 58999999999863
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=127.14 Aligned_cols=85 Identities=28% Similarity=0.420 Sum_probs=74.3
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----------------TEKHRGFAFVEFELAEDAAAAI 71 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS-----------------SCCCSSEEEECCSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999865431 2345699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCcc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.||+..|.|+.|.|.++.+...
T Consensus 72 ~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 72 DNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp HHHTTEEETTEEEEEEECCCCCC
T ss_pred HHhCCCEECCcEEEEEeCCCCCC
Confidence 6999999999999999986543
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=6.3e-16 Score=126.46 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=73.3
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.|| |..|+|++++. ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD-----------------TDKFKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS-----------------SCSEEEEEEEEESSHHHHHHHG
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC-----------------CCccceEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999997 99999977542 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCc
Q 015821 302 AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.+..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 74 TYDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp GGTTCEETTEECEEEECCCCC
T ss_pred hhCCCeECCeEEEEEEecCCC
Confidence 999999999999999997654
No 48
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.6e-16 Score=125.88 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=73.7
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+++|+.||.|..|.|+.++.. .+ ++.++|||||+|.+.++|..|| .
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~g-------------t~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK-AG-------------VLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECT-TC-------------CEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CC-------------CcCcccEEEEEECCHHHHHHHHHH
Confidence 4688999999999999999999999999999999776520 01 1245699999999999999999 5
Q ss_pred ccCceeeeeeeEEecCCCCcc
Q 015821 303 FNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k 323 (399)
||+..|.|+.|.|.++.+...
T Consensus 70 l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp STTCEETTEECEEECSSCSSC
T ss_pred hCCCeeCCeEEEEEEccCCCC
Confidence 999999999999999976543
No 49
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.3e-16 Score=125.62 Aligned_cols=82 Identities=24% Similarity=0.405 Sum_probs=72.7
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+.+|+++|+.+|+.||.|.+|+|+.++. .++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-------------------SNDPYCFVEFYEHRDAAAAL 72 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------------------SSCCEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------------------CCCCEEEEEECCHHHHHHHH
Confidence 44579999999999999999999999999999999966431 13599999999999999999
Q ss_pred H-ccCceeeeeeeEEecCCCCc
Q 015821 302 A-FNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (399)
. ||+..|.|+.|.|.++.++.
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 73 AAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp HHHTTEEETTEEEEEEECCCTT
T ss_pred HHhCCCCcCCCeEEEEECCCCc
Confidence 4 99999999999999998754
No 50
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=1.4e-16 Score=130.31 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=72.5
Q ss_pred CCcCEEEEecCCC------CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHH
Q 015821 223 KLLRTIFVGNLPL------KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (399)
Q Consensus 223 ~~~rtVfVgNLP~------~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~ 296 (399)
...++|||+|||+ ++++++|+.+|++||.|.+|+|++++. ++.++|||||+|.+.++
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~-----------------tg~~kG~afV~f~~~~~ 66 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA-----------------TGKTKGFLFVECGSMND 66 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT-----------------TTEECSEEEEEESSHHH
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC-----------------CCccceEEEEEECCHHH
Confidence 3468999999999 999999999999999999999977652 24456999999999999
Q ss_pred HHHHH-HccCceeee-eeeEEecCCC
Q 015821 297 TEAAL-AFNMAVIGG-NHIRLDRACP 320 (399)
Q Consensus 297 A~~Al-~lng~~l~G-r~I~V~~a~~ 320 (399)
|..|| .|||..|.| +.|.|.++.+
T Consensus 67 A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 67 AKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHhCCcccCCCeEEEEEECch
Confidence 99999 699999999 9999999864
No 51
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=4.4e-16 Score=125.80 Aligned_cols=81 Identities=15% Similarity=0.325 Sum_probs=72.1
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++|||+|||+++|+++|+.+|+.||.|.+|+|+.++. +|.++|||||+|.+.++|..|+ .|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ-----------------TGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-----------------TCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-----------------CCccceEEEEEECCHHHHHHHHHHh
Confidence 58899999999999999999999999999999865431 2345799999999999999999 69
Q ss_pred cCceeeeeeeEEecCCCCc
Q 015821 304 NMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~ 322 (399)
||..|.|+.|.|.++.++.
T Consensus 65 ~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp TTCEETTEECEEEECSCSS
T ss_pred CCCeECCeEEEEEEcCCCC
Confidence 9999999999999997653
No 52
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.6e-16 Score=126.21 Aligned_cols=84 Identities=27% Similarity=0.390 Sum_probs=73.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...++|||+|||+++|+++|+.+|+.|| |..|+|++++. + .+.++|||||+|.+.++|+.||.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~--------------~g~~~g~afV~f~~~~~a~~A~~ 75 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--N--------------PERLKGFGYAEFEDLDSLLSALS 75 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSS--C--------------TTSBCSCEEEEESSHHHHHHHHG
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCC--C--------------CCCcCeEEEEEECCHHHHHHHHh
Confidence 3468999999999999999999999999 99999866542 1 14467999999999999999999
Q ss_pred ccCceeeeeeeEEecCCCCcc
Q 015821 303 FNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k 323 (399)
||+..|.|+.|.|.++.++..
T Consensus 76 l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 76 LNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp GGTCEETTEECEEEECCCCCC
T ss_pred cCCCEeCCcEEEEEEccCCCC
Confidence 999999999999999987544
No 53
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.2e-16 Score=125.47 Aligned_cols=82 Identities=27% Similarity=0.327 Sum_probs=72.6
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEE-EEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSV-RIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I-~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
..++|||+|||+++|+++|+.+|+.||.|..| +|++++. ++.++|||||+|.+.++|..|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD-----------------TGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT-----------------TCSCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC-----------------CCCcCeEEEEEECCHHHHHHHHH
Confidence 47899999999999999999999999999998 8865431 34456999999999999999995
Q ss_pred -ccCceeeeeeeEEecCCCCc
Q 015821 303 -FNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~ 322 (399)
||+..|.|+.|.|.++.++.
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp TTTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEEecccC
Confidence 99999999999999997654
No 54
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.7e-16 Score=122.25 Aligned_cols=75 Identities=21% Similarity=0.373 Sum_probs=67.3
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHccCc
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~lng~ 306 (399)
+|||+|||+++|+++|+.+|++||.|.+|+++.++. ++.++|||||+|.+.++|++|+.+|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~a~~~~~~ 63 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT-----------------TNRHRGFGFVTFESEDIVEKVCEIHFH 63 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS-----------------STTSCBEEEEECSCHHHHHHHHSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----------------CCCcCcEEEEEECCHHHHHHHHHCCCC
Confidence 499999999999999999999999999998865431 344679999999999999999999999
Q ss_pred eeeeeeeEEecC
Q 015821 307 VIGGNHIRLDRA 318 (399)
Q Consensus 307 ~l~Gr~I~V~~a 318 (399)
.|.|+.|.|.++
T Consensus 64 ~~~g~~l~v~~A 75 (75)
T 2mss_A 64 EINNKMVECKKA 75 (75)
T ss_dssp CSSSCCCEEECC
T ss_pred EECCEEEEEEeC
Confidence 999999999875
No 55
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.9e-16 Score=127.47 Aligned_cols=85 Identities=20% Similarity=0.335 Sum_probs=74.1
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|..|+|++++. ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A~ 74 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD-----------------TEHSKGCAFAQFMTQEAAQKCL 74 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-----------------SCCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCCCccEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999866542 2345699999999999999999
Q ss_pred -Hcc------CceeeeeeeEEecCCCCcc
Q 015821 302 -AFN------MAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 -~ln------g~~l~Gr~I~V~~a~~~~k 323 (399)
.+| +..|.|+.|.|.++.+...
T Consensus 75 ~~~~~~~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 75 AAASLEAEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp HHHCTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred HHhccccccCCcEEcCEEEEEEECCCCcc
Confidence 588 9999999999999986543
No 56
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=7.6e-16 Score=126.13 Aligned_cols=82 Identities=22% Similarity=0.326 Sum_probs=72.7
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|.+|+|+.++ ++.++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP------------------DGSSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS------------------SSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCcCcEEEEEeCCHHHHHHHHH
Confidence 347899999999999999999999999999999997654 2345699999999999999999
Q ss_pred HccCceeee---eeeEEecCCCCc
Q 015821 302 AFNMAVIGG---NHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~G---r~I~V~~a~~~~ 322 (399)
.||+..|.| +.|.|.++.+..
T Consensus 75 ~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 75 ALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HHSSCCCCTTCSSCCEEEESCSSC
T ss_pred HHcCCccCCCCCccEEEEECccCc
Confidence 599999988 999999997654
No 57
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=6.3e-16 Score=128.96 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=73.7
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+++|+.||.|..|+|+.++. ++.++|||||+|.+.++|+.||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ-----------------TNLSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS-----------------SCSEEEEEEEECSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----------------CCCcCccEEEEECCHHHHHHHHH
Confidence 3468899999999999999999999999999999976542 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCc
Q 015821 302 AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.+..
T Consensus 86 ~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 86 SMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp HHTTCEETTEECEEECCCCSC
T ss_pred HcCCCEECCEEEEEEEcCCCC
Confidence 799999999999999997654
No 58
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.65 E-value=5.6e-16 Score=124.50 Aligned_cols=79 Identities=28% Similarity=0.426 Sum_probs=70.9
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...++|||+|||+.+|+++|+++|+.||.|.+|+|+.++ .+.++|||||+|.+.++|..|+.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR------------------EGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT------------------TSCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCCceEEEEEECCHHHHHHHHH
Confidence 446899999999999999999999999999999997654 13456999999999999999995
Q ss_pred -ccCceeeeeeeEEecCC
Q 015821 303 -FNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 303 -lng~~l~Gr~I~V~~a~ 319 (399)
||+..|.|+.|.|.++.
T Consensus 76 ~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHTTCEETTEECEEECCC
T ss_pred HhCCCEECCCEEEEEEcC
Confidence 99999999999999975
No 59
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=127.27 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=74.3
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|..|+|+.++. ++.++|||||+|.+.++|..|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE-----------------TQRSRGFGFVTFENIDDAKDAM 71 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS-----------------SCSCCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----------------CCCcccEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999966441 2345699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCcc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.||+..|.|+.|.|.++.+...
T Consensus 72 ~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 72 MAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp HHHTTCCTTSCCCEEEEEECCCC
T ss_pred HHhCCCEECCeEEEEEECCCCCC
Confidence 7999999999999999976543
No 60
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=127.57 Aligned_cols=84 Identities=25% Similarity=0.342 Sum_probs=73.6
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|+.||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH-----------------TKAPRGFAFVRFHDRRDAQDAE 72 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS-----------------SCSBCSCEEEEESSSSHHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-----------------CCCCCeEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999865441 2345699999999999999999
Q ss_pred H-ccCceeeeeeeEEecCCCCc
Q 015821 302 A-FNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (399)
. ||+..|.|+.|.|.++.+..
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 73 AAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp HHHSSCCBTTBCCEEEECSSCC
T ss_pred HHcCCCEECCcEEEEEECCcCC
Confidence 5 99999999999999997643
No 61
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=124.29 Aligned_cols=84 Identities=19% Similarity=0.346 Sum_probs=73.6
Q ss_pred cCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 220 ~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
......++|||+|||+++|+++|+++|+.||.|..|+|+.++. .++|||||+|.+.++|..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~ 70 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADR 70 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-------------------TTCCEEEEEESCHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------------------CCcEEEEEEECCHHHHHH
Confidence 3345579999999999999999999999999999999966431 146999999999999999
Q ss_pred HH-HccCceeeeeeeEEecCCCCc
Q 015821 300 AL-AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a~~~~ 322 (399)
|| .||+..|.|+.|.|.++.++.
T Consensus 71 A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 71 AREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp HHHHHTTCEETTEECEEEECCSSC
T ss_pred HHHHhCCCEECCEEEEEEEcccCC
Confidence 99 599999999999999998654
No 62
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.5e-16 Score=125.22 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=73.2
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCee-EEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEID-SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~-~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
...++|||+|||+++|+++|+.+|+.||.|. +|+|++++. ++.++|||||+|.+.++|+.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL-----------------TGIPAGYCFVEFADLATAEKCL 69 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS-----------------SCCEEEEEEEECSCHHHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC-----------------CCCcCCEEEEEeCCHHHHHHHH
Confidence 4578999999999999999999999999999 999977542 2345699999999999999999
Q ss_pred H-ccCceeeeee----eEEecCCCCc
Q 015821 302 A-FNMAVIGGNH----IRLDRACPPR 322 (399)
Q Consensus 302 ~-lng~~l~Gr~----I~V~~a~~~~ 322 (399)
. ||+..|.|+. |+|.++.+..
T Consensus 70 ~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 70 HKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp HTTTTSEESSCSSCEECCEEETTCCS
T ss_pred HHHcCCccCCCCcceeEEEeecCCCC
Confidence 5 9999999999 9999987643
No 63
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.64 E-value=6.1e-16 Score=128.61 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=70.9
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.+...++|||+|||+++|+++|+.+|+.||.|.+|+|++++ . +|.++|||||+|.+.++|..|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~---------------tg~~kg~afV~f~~~~~A~~A 83 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP--L---------------TKRSRGFGFVTFMDQAGVDKV 83 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT--T---------------TCCCTTCEEEEESSHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC--C---------------CCCcCcEEEEEECCHHHHHHH
Confidence 34457899999999999999999999999999999996643 1 345679999999999999999
Q ss_pred HHccCceeeeeeeEEecCCCCc
Q 015821 301 LAFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~~ 322 (399)
|...+..|.|+.|.|.++.+..
T Consensus 84 i~~~~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 84 LAQSRHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp HHSSCEEETTEEEEEEECCCCC
T ss_pred HHHCCCcCCCEEEEEEEccCCC
Confidence 9766799999999999997643
No 64
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.6e-16 Score=123.84 Aligned_cols=81 Identities=25% Similarity=0.347 Sum_probs=71.3
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~ 75 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD-----------------TRKSKGVAFILFLDKDSAQNCT 75 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS-----------------SCCCTTCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----------------CCCcccEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999966442 2345699999999999999999
Q ss_pred -HccCceeeeeeeEEecCC
Q 015821 302 -AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~ 319 (399)
.||+..|.|+.|.|.++.
T Consensus 76 ~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 76 RAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HHTTTEEETTEEEEEEECC
T ss_pred HHcCCCeeCCcEEEEEecC
Confidence 699999999999999873
No 65
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=127.41 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=72.1
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+.+|+.||.|.+|.|+.++. ++.++|||||+|.+.++|+.|+ .
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-----------------TGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TSSEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC-----------------CCceeeEEEEEECCHHHHHHHHHH
Confidence 468899999999999999999999999999999976542 2445799999999999999999 5
Q ss_pred ccCceeeeeeeEEecCCCC
Q 015821 303 FNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (399)
||+..|.|+.|.|.++.+.
T Consensus 85 l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 85 LNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp HTTCBSSSSBCEEEESEES
T ss_pred hcCCEECCcEEEEEeecCC
Confidence 9999999999999998653
No 66
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=9.3e-16 Score=125.86 Aligned_cols=84 Identities=21% Similarity=0.388 Sum_probs=73.2
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeee-cccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV-PIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~-~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.+ + . ++.++|||||+|.+.++|..|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~~g~afV~f~~~~~a~~A 74 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMT--G---------------TGAHRGFGFVDFITKQDAKKA 74 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCS--S---------------SCSSCSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCC--C---------------CCCcCceEEEEECCHHHHHHH
Confidence 345789999999999999999999999999999998554 2 1 344679999999999999999
Q ss_pred H-Hc-cCceeeeeeeEEecCCCCc
Q 015821 301 L-AF-NMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 301 l-~l-ng~~l~Gr~I~V~~a~~~~ 322 (399)
| .| |+..|.|+.|.|.++.+..
T Consensus 75 ~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 75 FNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHHHTCCBSSSCBCEEEECCCCC
T ss_pred HHHhccCCeECCCEEEEEeCCCCC
Confidence 9 58 9999999999999998654
No 67
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=130.24 Aligned_cols=83 Identities=11% Similarity=0.127 Sum_probs=72.8
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I-~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
.+...++|||+|||+++|+++|+++|+.||.| .+|+|++++ ++.++|||||+|.+.++|..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~------------------~g~~~G~afV~F~~~~~a~~ 72 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN------------------NGQGLGQALVQFKNEDDARK 72 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT------------------TSSCSSCEEEECSSHHHHHH
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC------------------CCCcceEEEEEECCHHHHHH
Confidence 34557999999999999999999999999999 889886543 23456999999999999999
Q ss_pred HHHccCceeeeeeeEEecCCCC
Q 015821 300 ALAFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~~ 321 (399)
||.+|+..|.|+.|.|.++.+.
T Consensus 73 Al~~~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 73 SERLHRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp HGGGCSEEETTEEEEEEEECHH
T ss_pred HHHhCCCccCCeEEEEEECCHH
Confidence 9988999999999999998653
No 68
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.5e-16 Score=126.69 Aligned_cols=85 Identities=21% Similarity=0.321 Sum_probs=74.5
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|..|+|+.++. ++.++|||||+|.+.++|+.||
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~a~ 75 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT-----------------TNQSRGFGFVKFKDPNCVGTVL 75 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-----------------SCCEEEEEEEEESSTTHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-----------------CCCcceEEEEEECCHHHHHHHH
Confidence 44578999999999999999999999999999999977542 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCcc
Q 015821 302 AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (399)
..++..|.|+.|.|.++.+...
T Consensus 76 ~~~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 76 ASRPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp HHCSEEETTEEEBCCCSCCSSC
T ss_pred HhCCCeECCEEEEEEEccCCCC
Confidence 6699999999999999986543
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=124.98 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=73.6
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcc-cCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~-~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
....++|||+|||+++|+++|+.+|+. ||.|.+|+|+.++ ++.++|||||+|.+.++|..|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A 67 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ------------------TGVSKGYGFVKFTDELEQKRA 67 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT------------------TCCEEEEEEEEESCHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC------------------CCCccceEEEEECCHHHHHHH
Confidence 345789999999999999999999999 9999999996653 234569999999999999999
Q ss_pred H-HccCce-eeeeeeEEecCCCCcc
Q 015821 301 L-AFNMAV-IGGNHIRLDRACPPRK 323 (399)
Q Consensus 301 l-~lng~~-l~Gr~I~V~~a~~~~k 323 (399)
| .||+.. |.|+.|.|.++.+...
T Consensus 68 ~~~l~g~~~~~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 68 LTECQGAVGLGSKPVRLSVAIPKAS 92 (104)
T ss_dssp HHHTTTCCSSSSSCCCCCBCCCCCS
T ss_pred HHHccCCcccCCEeEEEEEccCCCc
Confidence 9 599999 9999999999976543
No 70
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=9.1e-16 Score=127.45 Aligned_cols=83 Identities=18% Similarity=0.316 Sum_probs=73.5
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+.+|+++|+.+|+.||.|..|.|++++. ++.++|||||+|.+.++|..|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE-----------------TGRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT-----------------TTEEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----------------CCccceEEEEEECCHHHHHHHH
Confidence 44578999999999999999999999999999999977642 2345699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|||..|.|+.|.|.++.++
T Consensus 86 ~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 86 EQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHTTCCSSSSCCEEECSCSS
T ss_pred HHcCCCEECCEEEEEEEcccC
Confidence 59999999999999998754
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=6.4e-16 Score=122.09 Aligned_cols=83 Identities=20% Similarity=0.353 Sum_probs=71.9
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH-
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~- 302 (399)
..++|||+|||+++|+++|+++|+.||.|.+|.|+.++.. .+.++|||||+|.+.++|..|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----------------~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH----------------PHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTE----------------EEEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCC----------------CCCCCcEEEEEEecHHHHHHHHHH
Confidence 3688999999999999999999999999999998765421 11246999999999999999994
Q ss_pred ccCceeeeeeeEEecCCCCc
Q 015821 303 FNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (399)
|||..|.|+.|.|.++.++.
T Consensus 67 l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 67 MDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp HTTCEETTEECEEEEECCCC
T ss_pred cCCCeECCeEEEEEECCCCC
Confidence 99999999999999987653
No 72
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-15 Score=122.91 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=72.7
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|..|+|+.++. ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~ 74 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-----------------TGHSKGFGFVRFTEYETQVKVM 74 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS-----------------SCSEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCCccceEEEEECCHHHHHHHH
Confidence 34468899999999999999999999999999999976542 2445799999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCcc
Q 015821 302 AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (399)
. ++..|.|+.|.|.++.+...
T Consensus 75 ~-~~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 75 S-QRHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp H-SCEEETTEEEEEECCCTTCC
T ss_pred H-cCCeeCCeEEEEEecCCCCc
Confidence 7 57899999999999986543
No 73
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=1.1e-15 Score=122.12 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=71.8
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|..|+|+++ + +.++|||||+|.+.++|..|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~----~---------------g~~~g~afV~f~~~~~a~~a~~ 66 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME----N---------------GKSKGCGVVKFESPEVAERACR 66 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES----S---------------SCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc----C---------------CCcceEEEEEECCHHHHHHHHH
Confidence 34789999999999999999999999999999998542 2 335699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCc
Q 015821 302 AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.+..
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 67 MMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp HHTTCCBTTBCCCCEECSCCS
T ss_pred HhCCCEECCcEEEEEEcCCCC
Confidence 599999999999999997654
No 74
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=8.9e-16 Score=125.94 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.+...++|||+|||+++|+++|+.+|+.||.|..|+|+.++. ++.++|||||+|.+.++|..|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A 71 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF-----------------TGMHKGCAFLTYCERESALKA 71 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS-----------------SCSCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHH
Confidence 344578999999999999999999999999999999866442 244569999999999999999
Q ss_pred H-HccCcee---eeeeeEEecCCCCcc
Q 015821 301 L-AFNMAVI---GGNHIRLDRACPPRK 323 (399)
Q Consensus 301 l-~lng~~l---~Gr~I~V~~a~~~~k 323 (399)
+ .||+..+ .|+.|.|.++.+...
T Consensus 72 ~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 72 QSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp HHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred HHHhcCCcccCCCCceEEEEECCcccc
Confidence 9 5999987 899999999986543
No 75
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=124.38 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=71.1
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeE--------EEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCC
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--------VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~--------I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s 293 (399)
+...++|||+|||+++|+++|+.+|+.||.|.. |+|+.++. ++.++|||||+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-----------------~g~~~G~afV~f~~ 72 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-----------------TGKLKGEATVSFDD 72 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT-----------------TCSEEEEEEEEBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC-----------------CCCeeeEEEEEECC
Confidence 455789999999999999999999999999999 88866541 23457999999999
Q ss_pred HHHHHHHH-HccCceeeeeeeEEecC
Q 015821 294 EQSTEAAL-AFNMAVIGGNHIRLDRA 318 (399)
Q Consensus 294 ~e~A~~Al-~lng~~l~Gr~I~V~~a 318 (399)
.++|+.|+ .|||..|.|+.|.|.++
T Consensus 73 ~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 73 PPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 99999999 59999999999999986
No 76
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=126.94 Aligned_cols=83 Identities=19% Similarity=0.390 Sum_probs=73.2
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
..++|||+|||+++|+++|+.+|+.||.|..|+|+.++. ++.++|||||+|.+.++|..||..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA-----------------SKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT-----------------TSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-----------------CCCcCceEEEEeCCHHHHHHHHHh
Confidence 358899999999999999999999999999999966541 244569999999999999999977
Q ss_pred cCceeeeeeeEEecCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k 323 (399)
++..|.|+.|.|.++.+...
T Consensus 89 ~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 89 RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp CSEEETTEEEEEECCSSCCC
T ss_pred CCcEECCEEEEEEECCCCcc
Confidence 99999999999999986543
No 77
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=8.9e-16 Score=126.91 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=72.1
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+.+|+++|+.+|+.||.|.+|.|+.++. ++.++|||||+|.+.++|..|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-----------------TGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT-----------------TSSBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999865431 3446799999999999999999
Q ss_pred HccCceeeeeeeEEecCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|||..|.|+.|.|.++.+.
T Consensus 87 ~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 87 ALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp HHTTCEETTEECEEEESEES
T ss_pred HcCCCEECCcEEEEEEcccC
Confidence 59999999999999998653
No 78
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8e-16 Score=126.70 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=71.8
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.+...++|||+|||+++|+++|+++|+.||.| +|+|++++ ++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~------------------~g~~~G~afV~F~~~~~a~~A 71 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP------------------DGRVTGEADVEFATHEDAVAA 71 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS------------------SSCEEEEEEEECSSSHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC------------------CCCEeeEEEEEECCHHHHHHH
Confidence 34557899999999999999999999999954 89886653 234569999999999999999
Q ss_pred HHccCceeeeeeeEEecCCCCc
Q 015821 301 LAFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~~ 322 (399)
|.+|+..|.|+.|.|.++.+..
T Consensus 72 l~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 72 MAKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp HTTSSCCSSSSCCEEEEECCCC
T ss_pred HHhCCCeECCcEEEEEECCCCC
Confidence 9999999999999999987543
No 79
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.9e-16 Score=122.45 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=70.1
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|+ .
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT-----------------TNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS-----------------SCSCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCCcCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999866542 2345699999999999999999 5
Q ss_pred ccCceeeeeeeEEecCC
Q 015821 303 FNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (399)
||+..|.|+.|+|.++.
T Consensus 67 l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 67 LKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHTCCEESCCSSCCC
T ss_pred hcCCeEeeEEEeecCCC
Confidence 99999999999988764
No 80
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=125.74 Aligned_cols=84 Identities=21% Similarity=0.327 Sum_probs=72.4
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.....++|||+|||+++|+++|+.+|+.||.|..|+|++++. ++.++|||||+|.+.++|+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ-----------------TGKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS-----------------SCCCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC-----------------CCccceEEEEEECCHHHHHHH
Confidence 345579999999999999999999999999999999965442 234569999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCCc
Q 015821 301 L-AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~ 322 (399)
| .+++ .|.|+.|.|.++.+..
T Consensus 76 i~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 76 CKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp HTCSSC-EETTEECEEEESTTTC
T ss_pred HHhCCC-cCCCEEEEEEEcccCC
Confidence 9 5777 8999999999997543
No 81
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=126.80 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCee--------EEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCC
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEID--------SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~--------~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s 293 (399)
....++|||+|||+++|+++|+.+|+.||.|. .|+|+.++ . ++.++|||||+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~--~---------------~g~~~g~afV~f~~ 74 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK--E---------------TGKPKGDATVSYED 74 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT--T---------------TCSBCSEEEEEBSS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeC--C---------------CCCeeeEEEEEECC
Confidence 44579999999999999999999999999998 58875543 1 34457999999999
Q ss_pred HHHHHHHH-HccCceeeeeeeEEecCCCCcc
Q 015821 294 EQSTEAAL-AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 294 ~e~A~~Al-~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.++|..|| .||+..|.|+.|.|.++.+...
T Consensus 75 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 75 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred HHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 99999999 5999999999999999986543
No 82
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=123.86 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=73.1
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ + +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~----~---------------g~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME----G---------------GRSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC----S---------------SSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----C---------------CCcCEEEEEEECCHHHHHHHH
Confidence 445789999999999999999999999999999998653 2 235699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCcc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.||+..|.|+.|.|.++.+...
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 73 TEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp HHHTTCBSSSSBCEEEECSSCCC
T ss_pred HHhCCCEeCCcEEEEEEeccccc
Confidence 5999999999999999986543
No 83
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=120.63 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=71.9
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+++|+.| .|.+|+|+++. +|.++|||||+|.+.++|+.||
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~ 67 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA------------------HGNKTGYIFVDFSNEEEVKQAL 67 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT------------------TSCEEEEEEEECSSHHHHHHHH
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC------------------CCCCceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999 89999996642 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (399)
.+|+..|.|+.|.|.++.+.
T Consensus 68 ~~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 68 KCNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp HSCSEEETTEEEEEEEESSC
T ss_pred HhCCceeCCcEEEEEECCcC
Confidence 99999999999999998754
No 84
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=124.67 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=71.9
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+++|+.||.|..|.|+.. +.++|||||+|.+.++|+.||
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------------------~~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--------------------RGGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--------------------SSSSCCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--------------------CCCCcEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999988331 124699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCcc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.||+..|.|+.|.|.++.+...
T Consensus 79 ~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 79 YGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp HHHTTCEETTEECEEECCCCCCC
T ss_pred HHcCCCEECCeEEEEEEcccCCC
Confidence 7999999999999999986543
No 85
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5e-16 Score=126.86 Aligned_cols=82 Identities=22% Similarity=0.397 Sum_probs=73.0
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|+ .
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE-----------------TGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT-----------------TTEEEEEEEEECSCHHHHHHHHHH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC-----------------CCccceEEEEEECCHHHHHHHHHH
Confidence 368899999999999999999999999999999977642 2345699999999999999999 5
Q ss_pred ccCceeeeeeeEEecCCCCc
Q 015821 303 FNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (399)
|||..|.|+.|.|.++.+..
T Consensus 70 l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 70 LNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp SSSBSCSSSCBEEEETTCTT
T ss_pred hCCCeeCCcEEEEEeCCCcc
Confidence 99999999999999997643
No 86
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=124.10 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=72.4
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~ 73 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK------------------DGKSRGIGTVTFEQSIEAVQAI 73 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT------------------TCSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCeeeEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997654 1345699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (399)
.||+..|.|+.|.|.++...
T Consensus 74 ~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 74 SMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp HHHTTCEETTEECEEEECSCC
T ss_pred HHhCCCEeCCCEEEEEEcccC
Confidence 59999999999999998643
No 87
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=125.08 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=70.4
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeE-EEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~-I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
...++|||+|||+++|+++|+++|+.||.|.. |+|+.+. +++++|||||+|.+.++|+.||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~------------------~g~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF------------------QGRSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS------------------SSCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC------------------CCCcceEEEEEECCHHHHHHHH
Confidence 45689999999999999999999999999987 7774431 3456799999999999999999
Q ss_pred HccCceeeeeeeEEecCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (399)
..|+..|.|+.|.|.++.+.
T Consensus 75 ~~~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 75 KKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp TTTTCCSSSSCCEEEEECTT
T ss_pred HhCcchhCCcEEEEEECCHH
Confidence 77999999999999998654
No 88
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=1.7e-15 Score=127.83 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=72.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
.++|||+|||+++|+++|+.+|+.||.|.+|+|++++. ++.++|||||+|.+.++|..||.||
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~l~ 98 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF-----------------SGHPKGYAYIEFAERNSVDAAVAMD 98 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT-----------------TSSCEEEEEEEESSHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----------------CCCcccEEEEEECCHHHHHHHHhcC
Confidence 58899999999999999999999999999999977642 3445799999999999999999999
Q ss_pred CceeeeeeeEEecCCCC
Q 015821 305 MAVIGGNHIRLDRACPP 321 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (399)
+..|.|+.|.|.++.+.
T Consensus 99 g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 99 ETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TCEETTEECEEEESSCC
T ss_pred CCeECCeEEEEEECCCC
Confidence 99999999999998754
No 89
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=122.21 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=70.9
Q ss_pred CCcCEEEEecCCCCCcHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~----~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
...++|||+|||+++|+++|+ .+|+.||.|.+|+|+.++. . +|||||+|.+.++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~-------------------~-rg~afV~f~~~~~A~ 66 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD-------------------Y-QLKAVVQMENLQDAI 66 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS-------------------T-TCCEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC-------------------C-CeEEEEEECCHHHHH
Confidence 346789999999999999999 9999999999999965431 1 489999999999999
Q ss_pred HHH-HccCceeeeeeeEEecCCCCc
Q 015821 299 AAL-AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.|+ .|||..|.|+.|.|.++.+..
T Consensus 67 ~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 67 GAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp HHHHHHTTEEETTEEEEEEECCCSS
T ss_pred HHHHHhCCCEECCeEEEEEEcCCCC
Confidence 999 599999999999999997643
No 90
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=1e-15 Score=129.15 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=72.0
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCC---eeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~---I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++ .++++|||||+|.+.++|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~------------------~g~~~G~afV~F~~~~~a~ 75 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR------------------EGRQSGEAFVELESEDDVK 75 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS------------------SSCEEEEEEEEBSSHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC------------------CCCCCeEEEEEECCHHHHH
Confidence 345789999999999999999999999999 8899987654 1345799999999999999
Q ss_pred HHHHccCceeeeeeeEEecCCC
Q 015821 299 AALAFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 299 ~Al~lng~~l~Gr~I~V~~a~~ 320 (399)
+||.+|+..|.|+.|.|.++..
T Consensus 76 ~Al~~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 76 LALKKDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp HHGGGTTEEETTEEEEEEEECH
T ss_pred HHHhcCCCeECCeEEEEEECCH
Confidence 9999999999999999999853
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.1e-15 Score=127.84 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=71.4
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.....++|||+|||+++|+++|+++|+.||.|..|+|++++. ++.++|||||+|.+.++|+.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A 98 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQ-----------------TSLSKCFGFVSFDNPDSAQVA 98 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSS-----------------SSCCCCEEEEEEESSHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-----------------CCCcCcEEEEEECCHHHHHHH
Confidence 344578999999999999999999999999999999965431 344679999999999999999
Q ss_pred H-HccCceeeeeeeEEecC
Q 015821 301 L-AFNMAVIGGNHIRLDRA 318 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a 318 (399)
+ .||+..|.|+.|+|.++
T Consensus 99 ~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 99 IKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHHCCCCEETTEECCEEEC
T ss_pred HHHcCCCEECCEEEEEEec
Confidence 9 59999999999999986
No 92
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.6e-16 Score=128.65 Aligned_cols=81 Identities=23% Similarity=0.248 Sum_probs=72.1
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
..++|||+|||+++|+++|+.+|+.||.|..|+|+.++. ++.++|||||+|.+.++|+.||.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~l 86 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN-----------------SRRSKGIAYVEFCEIQSVPLAIGL 86 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC-----------------SSSCCCCEEEEESCGGGHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC-----------------CCccCcEEEEEeCcHHHHHHHHHc
Confidence 468999999999999999999999999999999966441 234569999999999999999999
Q ss_pred cCceeeeeeeEEecCCCC
Q 015821 304 NMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (399)
|+..|.|+.|.|.++.+.
T Consensus 87 ~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 87 TGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp TTEEETTEEEEEEEHHHH
T ss_pred CCCEeCCeEEEEEecCCC
Confidence 999999999999998643
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=1.9e-15 Score=124.11 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=70.7
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+.+|+++|+++|+.||.|.+|.|+.++ ++.++|||||+|.+.++|..|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 88 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR------------------SGRSLGTADVHFERKADALKAMK 88 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT------------------TSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCcceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999997654 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecCC
Q 015821 302 AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~ 319 (399)
.||+..|.|+.|.|.++.
T Consensus 89 ~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 89 QYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HhCCCEeCCcEEEEEEeC
Confidence 599999999999999874
No 94
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=126.16 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=72.9
Q ss_pred CcCEEEEecCCCCCcHHHHH---HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLI---KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~---~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
..++|||+|||+++|+++|+ ++|++||.|..|.|+.+.. ++. .+.++|||||+|.+.++|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~--~~~------------~~~~~G~afV~f~~~~~A~~A 79 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTS--YAG------------SQGPSASAYVTYIRSEDALRA 79 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSS--CCS------------SSCCCEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCC--cCc------------cCCCCeEEEEEECcHHHHHHH
Confidence 46789999999999999999 9999999999999965442 221 124569999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCCc
Q 015821 301 L-AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~ 322 (399)
| .||+..|.|+.|.|.++.+..
T Consensus 80 i~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 80 IQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHHTTEEETTEEEEEESCCCCS
T ss_pred HHHhCCCEECCEEEEEEeccccc
Confidence 9 589999999999999998654
No 95
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1.6e-15 Score=130.15 Aligned_cols=85 Identities=22% Similarity=0.236 Sum_probs=74.2
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.+...++|||+|||+++|+++|+++|+.||.|..|+|++++. ++.++|||||+|.+.++|+.|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~~G~afV~F~~~~~A~~A 104 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-----------------SRRSRGFAFVYFENVDDAKEA 104 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS-----------------SSCCCCEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCccceEEEEEECCHHHHHHH
Confidence 345578999999999999999999999999999999976542 234569999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCCc
Q 015821 301 L-AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~ 322 (399)
| .||+..|.|+.|.|.++.++.
T Consensus 105 i~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 105 KERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp HHHHTTCCSSSSCCEESCCSSSS
T ss_pred HHHhCCCEECCEEEEEEEecCCC
Confidence 9 599999999999999997643
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=6.5e-16 Score=126.12 Aligned_cols=82 Identities=29% Similarity=0.402 Sum_probs=70.2
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...++|||+|||+++|+++|+.+|+.|| |.+|+|+.++. .+|.++|||||+|.+.++|..||.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~----------------~~g~~~g~afV~f~~~~~a~~Ai~ 79 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS----------------NPERLKGFGYAEFEDLDSLLSALS 79 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT----------------TTCCCCSCEEEEECCHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC----------------cCCccCeEEEEEECCHHHHHHHHh
Confidence 4479999999999999999999999999 99999855431 134567999999999999999999
Q ss_pred ccCceeeeeeeEEecCCCC
Q 015821 303 FNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (399)
||+..|.|+.|.|.++.+.
T Consensus 80 l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 80 LNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp TTTCCBTTBCCCCEECCCS
T ss_pred cCCCEECCeEEEEEeccCC
Confidence 9999999999999998753
No 97
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=3.9e-15 Score=128.04 Aligned_cols=86 Identities=23% Similarity=0.348 Sum_probs=75.3
Q ss_pred cCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 220 ~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
......++|||+|||+++|+++|+.+|+.||.|.+|.|++++. ++.++|||||+|.+.++|..
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~ 99 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE-----------------TRQSRGYGFVKFQSGSSAQQ 99 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT-----------------TTEEEEEEEEEESSHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----------------CCCcceEEEEEECCHHHHHH
Confidence 3445579999999999999999999999999999999977652 23456999999999999999
Q ss_pred HH-HccCceeeeeeeEEecCCCCc
Q 015821 300 AL-AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a~~~~ 322 (399)
|| .||+..|.|+.|.|.++.+..
T Consensus 100 A~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 100 AIAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp HHHHTTTEECSSCEEEEEESSCCC
T ss_pred HHHHhCCCEECCeEEEEEECCCCC
Confidence 99 599999999999999997654
No 98
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=134.05 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=70.9
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccC--CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G--~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.++. +|.++|||||+|.+.++|..||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~-----------------tg~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA-----------------NGQSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT-----------------TCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC-----------------CCccceEEEEEECCHHHHHHHH
Confidence 468999999999999999999999999 899999977642 3456799999999999999999
Q ss_pred -HccCceeeeeeeEEecCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~ 320 (399)
.|||..|.|+.|.|.++.+
T Consensus 117 ~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 117 ELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHSTTCEETTEECEEEECCH
T ss_pred HHcCCCEECCeEeEEEEcCC
Confidence 5899999999999999864
No 99
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=122.89 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=71.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|..+.++.++ . ++.++|||||+|.+.++|+.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~--~---------------~g~~~g~afV~f~~~~~a~~Ai~ 75 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN--E---------------KGMPTGEAMVAFESRDEATAAVI 75 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC--S---------------SSCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC--C---------------CCCeeeEEEEEECCHHHHHHHHH
Confidence 346889999999999999999999999999877775543 2 3445699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (399)
.||+..|.|+.|.|.++..+
T Consensus 76 ~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 76 DLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp HTTTCEETTEECEEEESSCS
T ss_pred HhCCCeeCCeEEEEEEcCCC
Confidence 79999999999999998754
No 100
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=4.1e-16 Score=119.86 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=66.6
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHccCc
Q 015821 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306 (399)
Q Consensus 227 tVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~lng~ 306 (399)
+|||+|||+++|+++|+.+|++||.|.+|.++.++. ++.++|||||+|.+.++|..|+.+++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~Ai~~~~~ 63 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-----------------TNKRRGFCFITFKEEEPVKKIMEKKYH 63 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC-----------------CSSSCCCEEEECSSSHHHHHHHTTSSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCCcCCEEEEEECCHHHHHHHHHhCCC
Confidence 599999999999999999999999999998855431 345679999999999999999988999
Q ss_pred eeeeeeeEEecC
Q 015821 307 VIGGNHIRLDRA 318 (399)
Q Consensus 307 ~l~Gr~I~V~~a 318 (399)
.+.|+.|.|.++
T Consensus 64 ~~~g~~l~v~~a 75 (75)
T 1iqt_A 64 NVGLSKCEIKVA 75 (75)
T ss_dssp CBTTBCCCEEEC
T ss_pred eECCEEEEEEEC
Confidence 999999999864
No 101
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=125.82 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=68.7
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
+...++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|..|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kGfaFVeF~~~~~A~~Ai 69 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMV 69 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHH
Confidence 445789999999999999999999999999999998431 489999999999999999
Q ss_pred H-cc--CceeeeeeeEEecCCCCc
Q 015821 302 A-FN--MAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~-ln--g~~l~Gr~I~V~~a~~~~ 322 (399)
. ++ +..|.|+.|.|.++.+..
T Consensus 70 ~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 70 NYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp HHHTTSCCEETTEECCBCCCSSSS
T ss_pred HHhccCCceECCEEEEEEEcCCCC
Confidence 5 65 478999999999997643
No 102
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=1.1e-15 Score=122.75 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=69.3
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+.+|+.||.|..+.++.++ . ++.++|||||+|.+.++|++|| .
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~--~---------------~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN--E---------------KGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC--T---------------TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC--C---------------CCCEeeEEEEEECCHHHHHHHHHH
Confidence 35889999999999999999999999999888776653 2 2345699999999999999999 5
Q ss_pred ccCceeeeeeeEEecCC
Q 015821 303 FNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (399)
||+..|.|+.|.|.++.
T Consensus 77 l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 77 LNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HTTCEETTEECEEECCC
T ss_pred hCCCeECCcEEEEEecc
Confidence 99999999999999875
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=125.29 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=71.5
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|.+|+|+.+. + .++|||||+|.+.++|..|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~----~---------------~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE----R---------------GSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT----T---------------BCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC----C---------------CCceEEEEEECCHHHHHHHH
Confidence 4457899999999999999999999999999999996543 1 24699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|||..|.|+.|.|.++.++
T Consensus 87 ~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 87 EKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HHHTTCEETTEECEEEECCCS
T ss_pred HHcCCCEECCEEEEEEECCCC
Confidence 59999999999999998753
No 104
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8e-16 Score=118.67 Aligned_cols=75 Identities=19% Similarity=0.354 Sum_probs=66.3
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH-cc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~-ln 304 (399)
++|||+|||+++|+++|+.+|++||.|..|.++.++. ++.++|||||+|.+.++|..|+. ++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL-----------------TKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC-----------------SSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC-----------------CCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 4799999999999999999999999999999966541 24457999999999999999995 66
Q ss_pred CceeeeeeeEEecC
Q 015821 305 MAVIGGNHIRLDRA 318 (399)
Q Consensus 305 g~~l~Gr~I~V~~a 318 (399)
..+.|+.|.|.++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 9999999999886
No 105
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=9.4e-16 Score=126.82 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=72.1
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCC---eeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~---I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A 297 (399)
+....++|||+|||+++|+++|+.+|+.||. |.+|+|+.++ .|.++|||||+|.+.++|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~------------------~g~~~G~afV~F~~~~~a 68 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR------------------DGKRRGDALIEMESEQDV 68 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT------------------TSTTCSEEEEEBSSHHHH
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC------------------CCCEeeEEEEEECCHHHH
Confidence 3455789999999999999999999999998 8889886543 144679999999999999
Q ss_pred HHHHHccCceeeeeeeEEecCCC
Q 015821 298 EAALAFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 298 ~~Al~lng~~l~Gr~I~V~~a~~ 320 (399)
..||.+|+..|.|+.|.|.++.+
T Consensus 69 ~~Al~~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 69 QKALEKHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HHHHTTTTCCSSSSCCCCEECCH
T ss_pred HHHHHhCcceeCCeEEEEEECCH
Confidence 99999999999999999999864
No 106
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.4e-15 Score=117.94 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=69.6
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.....++|||+|||+++|+++|+.+|+.||.|..|+|+ +|||||+|.+.++|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A 59 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAA 59 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHH
Confidence 34557899999999999999999999999999999882 26999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCCc
Q 015821 301 L-AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~ 322 (399)
+ .||+..|.|+.|.|.++.+..
T Consensus 60 ~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 60 IAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp HHHHTTCEETTEECEEEESCCCC
T ss_pred HHHhCCCEECCcEEEEEECCCCC
Confidence 9 599999999999999998654
No 107
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=129.99 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=72.8
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeE--EEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~--I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
....++|||+|||+++|+++|+++|+.||.|.. |+|++++. +|.++|||||+|.+. +|..
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~-----------------tg~~rG~aFV~f~~~-~a~~ 81 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ-----------------TQLNRGFAFIQLSTI-EAAQ 81 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS-----------------SSSBCSCEEEECCHH-HHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC-----------------CCCcceEEEEEECCH-HHHH
Confidence 355789999999999999999999999999976 88866542 345679999999999 9999
Q ss_pred HH-HccCc----eeeeeeeEEecCCCCcc
Q 015821 300 AL-AFNMA----VIGGNHIRLDRACPPRK 323 (399)
Q Consensus 300 Al-~lng~----~l~Gr~I~V~~a~~~~k 323 (399)
|+ .||+. .|.|+.|.|.++.+...
T Consensus 82 Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 82 LLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp HHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred HHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 99 69999 99999999999986543
No 108
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.59 E-value=1.9e-15 Score=131.28 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=72.2
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCC---eeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~---I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
....++|||+|||+++|+++|+++|+.||. |.+|+|++++ .|+++|||||+|.+.++|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~------------------~g~srG~aFV~F~~~e~a~ 102 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR------------------EGRQSGEAFVELGSEDDVK 102 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS------------------SSCEEEEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC------------------CCCCCeEEEEEECCHHHHH
Confidence 345789999999999999999999999999 8889997754 1345799999999999999
Q ss_pred HHHHccCceeeeeeeEEecCCC
Q 015821 299 AALAFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 299 ~Al~lng~~l~Gr~I~V~~a~~ 320 (399)
+||.+|+..|.|+.|.|.++.+
T Consensus 103 ~Al~~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 103 MALKKDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HHHTTTEEESSSSEEEEEECCH
T ss_pred HHHhcCCCEECCEEEEEEECCh
Confidence 9999999999999999999853
No 109
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=2.6e-15 Score=127.06 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-----------------TGYLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-----------------TSSBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCccceEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999865441 3445699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (399)
.||+..|.|+.|.|.++.+.
T Consensus 83 ~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 83 GLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp HHTTCBSSSSBCEEEESEES
T ss_pred HhCCCeeCCeEEEEEEecCC
Confidence 69999999999999999654
No 110
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=125.17 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=68.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
.++|||+|||+++|+++|+++|+.| .|.+|+|+.++ .|+++|||||+|.+.++|++||.+|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~------------------~g~~~G~afV~F~~~~~a~~Al~~~ 76 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH------------------VGRNNGNGLVKFLSPQDTFEALKRN 76 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT------------------TCCCCSEEEEECSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC------------------CCCCCeEEEEEECCHHHHHHHHhcC
Confidence 5789999999999999999999999 78999986643 1345699999999999999999999
Q ss_pred CceeeeeeeEEecCCC
Q 015821 305 MAVIGGNHIRLDRACP 320 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (399)
+..|.||.|.|..+.+
T Consensus 77 ~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 77 RMLMIQRYVEVSPATE 92 (109)
T ss_dssp TEEETTEEEEEEECCH
T ss_pred CCeECCeEEEEEECCc
Confidence 9999999999988753
No 111
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=5.8e-15 Score=129.72 Aligned_cols=83 Identities=20% Similarity=0.301 Sum_probs=73.5
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM-----------------KKTACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCccceEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999999977542 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCc
Q 015821 302 AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.+..
T Consensus 100 ~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 100 YINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp HTTTSEETTEECEEEEESCCC
T ss_pred HhCCCEECCeEEEEEECCCCC
Confidence 599999999999999997644
No 112
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.59 E-value=4.5e-15 Score=130.22 Aligned_cols=84 Identities=25% Similarity=0.364 Sum_probs=73.9
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|.+|+|++++ . ++.++|||||+|.+.++|..||
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~--~---------------~g~~~g~afV~f~~~~~a~~A~ 129 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR--Y---------------TKESRGFAFVRFHDKRDAEDAM 129 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS--S---------------CTTSCCEEEEEESBHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--C---------------CCccceEEEEEECCHHHHHHHH
Confidence 3446899999999999999999999999999999986643 1 3456799999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.|||..|.|+.|.|.++.+..
T Consensus 130 ~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 130 DAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHSTTEESSSSEEEEEEECCSS
T ss_pred HHhCCCEECCeEEEEEECCCCC
Confidence 599999999999999998653
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.9e-15 Score=120.07 Aligned_cols=82 Identities=26% Similarity=0.281 Sum_probs=69.1
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.....++|||+|||+++|+++|+.+|+.||.| +++.+ .++.++|||||+|.+.++|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~------------------~~g~~~g~afV~f~~~~~A~~A 69 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN------------------QNGKSKGYAFIEFASFEDAKEA 69 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC------------------SSSCBCSEEEEECSSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC------------------CCCCEeeEEEEEECCHHHHHHH
Confidence 34457999999999999999999999999976 34222 1344679999999999999999
Q ss_pred HH-ccCceeeeeeeEEecCCCCcc
Q 015821 301 LA-FNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 301 l~-lng~~l~Gr~I~V~~a~~~~k 323 (399)
|. ||+..|.|+.|.|.++.++..
T Consensus 70 ~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 70 LNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp HHHTSSEEETTEEEEEEECSSCCC
T ss_pred HHHhCCCEeCCeEEEEEEcCCCCC
Confidence 95 999999999999999986543
No 114
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=126.92 Aligned_cols=82 Identities=27% Similarity=0.416 Sum_probs=71.2
Q ss_pred cCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 220 ~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
......++|||+|||+.+|+++|+.+|+.||.|..|+|+.++. ++.++|||||+|.+.++|..
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~ 120 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----------------TEKHRGFAFVEFELAEDAAA 120 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT-----------------TCCCCSEEEEEESCHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC-----------------CCCcCcEEEEEECCHHHHHH
Confidence 3445679999999999999999999999999999999865431 23456999999999999999
Q ss_pred HH-HccCceeeeeeeEEecC
Q 015821 300 AL-AFNMAVIGGNHIRLDRA 318 (399)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a 318 (399)
|+ .||+..|.|+.|.|.++
T Consensus 121 A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 121 AIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHSTEEEETTEEEEEEC-
T ss_pred HHHHhCCCEECCEEEEEEeC
Confidence 99 69999999999999875
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=8.5e-15 Score=117.26 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=69.8
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|..|.++ +|||||+|.+.++|..|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 4457899999999999999999999999999999882 269999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCcc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.||+..|.|+.|.|.++.++..
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 62 RGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp HHHTTEEETTEEEEEEESSCCCS
T ss_pred HHhCCCeeCCcEEEEEEccCCCC
Confidence 6999999999999999976543
No 116
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=7e-16 Score=122.85 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=67.7
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hcc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ln 304 (399)
++|||+|||+++|+++|+++|+.||.|.+|.+++++. ++.++|||||+|.+.+ |..|+ .||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE-----------------TKKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS-----------------SCCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC-----------------CCCcceEEEEEECCHH-HHHHHHHhC
Confidence 5899999999999999999999999999999966441 2445799999999999 99999 699
Q ss_pred CceeeeeeeEEecCCCC
Q 015821 305 MAVIGGNHIRLDRACPP 321 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (399)
+..+.|+.|.|.++.+.
T Consensus 64 g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPK 80 (90)
T ss_dssp SSCCSSSSCSEEEC---
T ss_pred CCEECCeEEEEEEcCCC
Confidence 99999999999999754
No 117
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=123.91 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=67.0
Q ss_pred CcCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 224 LLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 224 ~~rtVfVgNLP~-~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
..++|||+|||+ ++|+++|+.+|+.||.|.+|+|++ ++|||||+|.+.++|..|+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-----------------------KINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-----------------------SSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 478999999999 999999999999999999999843 2489999999999999999
Q ss_pred HccC--ceeeeeeeEEecCCCCc
Q 015821 302 AFNM--AVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng--~~l~Gr~I~V~~a~~~~ 322 (399)
.||+ ..|.|+.|.|.++....
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp HHHHSCCEETTEECEEEEECCCT
T ss_pred HHcCCCceECCcEEEEEECCCCC
Confidence 5775 45999999999997543
No 118
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=117.70 Aligned_cols=77 Identities=25% Similarity=0.389 Sum_probs=69.0
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhccc--CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKF--GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~--G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
....++|||+|||+.+|+++|+.+|+.| |.|..|.+ .+|||||+|.+.++|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-------------------------~~g~afV~f~~~~~A~~ 66 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-------------------------IRDYAFVHFSNREDAVE 66 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-------------------------CSSEEEEEESSHHHHHH
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-------------------------eCCeEEEEeCCHHHHHH
Confidence 3457899999999999999999999999 89988876 13899999999999999
Q ss_pred HHH-ccCceeeeeeeEEecCCCCcc
Q 015821 300 ALA-FNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 300 Al~-lng~~l~Gr~I~V~~a~~~~k 323 (399)
|+. ||+..|.|+.|.|.++.+...
T Consensus 67 A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 67 AMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp HHHHHSSEEETTEEEEEECCCCCCC
T ss_pred HHHHhCCCEeCCcEEEEEECCCCCC
Confidence 995 999999999999999986543
No 119
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.3e-15 Score=117.20 Aligned_cols=76 Identities=17% Similarity=0.350 Sum_probs=69.6
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|..|.|+ +|||||+|.+.++|+.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999883 279999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCcc
Q 015821 302 AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.||+..|.|+.|.|.++.++..
T Consensus 61 ~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 61 NLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp HHTTCBCSSCBCEEECSSCCCC
T ss_pred HhcCCccCCcEEEEEECCCCCC
Confidence 6999999999999999986543
No 120
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.4e-15 Score=121.76 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=70.1
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|..|+|+.++ ++.++|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS------------------SGTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS------------------SSCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCcceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999996653 2345699999999999999999
Q ss_pred HccCcee--------eeeeeEEecCCCC
Q 015821 302 AFNMAVI--------GGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l--------~Gr~I~V~~a~~~ 321 (399)
.|||..| .++.|.|.++.++
T Consensus 85 ~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 85 HFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp HHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred HhCCCEEcCCccccCCCCceeEEccCCC
Confidence 5999999 5777888888643
No 121
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=122.06 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=70.4
Q ss_pred CCCcCEEEEecCCCCC------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHH
Q 015821 222 GKLLRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~v------Tee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e 295 (399)
....++|||+|||+.+ |+++|+.+|++||.|.+|.|++ . +|.++|||||+|.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~----~---------------~g~~~G~afV~f~~~~ 72 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE----E---------------DGKTKGYIFLEYASPA 72 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC----B---------------TTBSCCEEEEEECSSS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC----C---------------CCCeeeEEEEEECCHH
Confidence 3446899999999999 8899999999999999998741 2 2345699999999999
Q ss_pred HHHHHH-HccCceeeee-eeEEecCCCC
Q 015821 296 STEAAL-AFNMAVIGGN-HIRLDRACPP 321 (399)
Q Consensus 296 ~A~~Al-~lng~~l~Gr-~I~V~~a~~~ 321 (399)
+|..|+ .|||..|.|+ .|.|.++...
T Consensus 73 ~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 73 HAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 999999 5999999998 9999998653
No 122
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.6e-15 Score=120.12 Aligned_cols=79 Identities=19% Similarity=0.394 Sum_probs=68.8
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|. +.+++. .++|||||+|.+.++|+.|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------------------~~~g~afV~f~~~~~a~~A~ 73 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------------------GPRRRAFLHYPDSAAAQQAV 73 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------------------TTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------------------CCCcEEEEEECCHHHHHHHH
Confidence 34468999999999999999999999999996 555432 24699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.++.
T Consensus 74 ~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 74 SCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp HHHTTCCSSSSCCEEEECCCCC
T ss_pred HHhCCCEECCcEEEEEEcCCCC
Confidence 699999999999999997653
No 123
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.2e-15 Score=121.45 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=70.2
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCC-eeEEEEe-eecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIR-SVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~-I~~I~i~-~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
..++|||+|||+++|+++|+.+|+.||. |.+|.|+ .+. .++.++|||||+|.+.++|..|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA-----------------DKMKNRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSC-----------------TTTTTCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCC-----------------CCCCcCcEEEEEecCHHHHHHHH
Confidence 4689999999999999999999999998 9999875 221 13456799999999999999999
Q ss_pred -Hcc--CceeeeeeeEEecCCCCc
Q 015821 302 -AFN--MAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 -~ln--g~~l~Gr~I~V~~a~~~~ 322 (399)
.|| +..|.|+.|.|.++.+..
T Consensus 70 ~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 70 RKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TTTTTCCSCBTTBCCEEEESCSSC
T ss_pred HHhhCCCceecCCeEEEEEcCCCC
Confidence 585 589999999999997653
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=4.3e-15 Score=119.68 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=66.7
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
.+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|..|+ .
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 357799999999999999999999999999998822 3599999999999999999 6
Q ss_pred ccCceeeeeeeEEecCC
Q 015821 303 FNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (399)
||+..+.|+.|+|.++.
T Consensus 63 Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 63 LNNCVLANTTIFAESPS 79 (89)
T ss_dssp HTTEEETTEEEEEECCC
T ss_pred hcCCEECCcEEEEEECC
Confidence 99999999999999973
No 125
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=7.5e-15 Score=124.14 Aligned_cols=82 Identities=13% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+.+|+++|+.+|+.||.|.+|.|+.++ ++.++|||||+|.+.++|..|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------------------~g~~~g~afV~f~~~~~A~~Ai 93 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR------------------SGRSLGTADVHFERRADALKAM 93 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS------------------SSSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC------------------CCCEeeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999999999996643 2345699999999999999999
Q ss_pred H-ccCceeeeeeeEEecCCCC
Q 015821 302 A-FNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~ 321 (399)
. ||+..|.|+.|.|.++.+.
T Consensus 94 ~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 94 KQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp HHHTTEESSSCEEEEEEECCT
T ss_pred HHcCCCEECCcEEEEEEeCCC
Confidence 5 9999999999999998754
No 126
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=9e-15 Score=118.98 Aligned_cols=75 Identities=27% Similarity=0.498 Sum_probs=68.3
Q ss_pred CCCcCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 222 GKLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 222 ~~~~rtVfVgNLP~-~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
....++|||+|||+ ++|+++|+.+|+.||.|.+|+|. +|||||+|.+.++|..|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A 73 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDA 73 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------------------------SSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHH
Confidence 44579999999998 99999999999999999999881 38999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCC
Q 015821 301 L-AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~ 321 (399)
+ .|||..|.|+.|.|.++.+.
T Consensus 74 i~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 74 IEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp HHHHTTSEETTEECEEEECCCC
T ss_pred HHHcCCCEECCEEEEEEecCCC
Confidence 9 59999999999999998653
No 127
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-15 Score=128.31 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=69.6
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...++|||+|||+++|+++|+.+|+.||.|..+.++.+. . ++.++|||||+|.+.++|..||.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~--~---------------~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG--P---------------NGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC--T---------------TSSEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC--C---------------CCCCCeEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999774443332 1 34457999999999999999999
Q ss_pred ccCceeeeeeeEEecCCC
Q 015821 303 FNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (399)
+|+..|.|+.|.|.++.+
T Consensus 86 ~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 86 RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp SCSBCSTTSCBEEEEECH
T ss_pred hCCCeECCcEEEEEECCH
Confidence 999999999999999864
No 128
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.7e-15 Score=115.72 Aligned_cols=74 Identities=26% Similarity=0.484 Sum_probs=67.1
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+.+|+++|+.+|++||.|..|++++ ++|||||+|.+.++|..|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----------------------~kg~afV~f~~~~~A~~a~ 65 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----------------------RQQCAFIQFATRQAAEVAA 65 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESSHHHHHHHH
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999998843 2489999999999999999
Q ss_pred H-c-cCceeeeeeeEEecC
Q 015821 302 A-F-NMAVIGGNHIRLDRA 318 (399)
Q Consensus 302 ~-l-ng~~l~Gr~I~V~~a 318 (399)
. | ++..+.|+.|.|.++
T Consensus 66 ~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 66 EKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp HTTTTTCEETTEECCEEEC
T ss_pred HHhcCCeeECCCEEEEEec
Confidence 5 7 999999999999986
No 129
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=6.4e-15 Score=121.55 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=67.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
..+++|||+|||+++|+++|+.+|++||.|.+|++++ ++|||||+|.+.++|..|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----------------------KKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999998842 2489999999999999999
Q ss_pred HccCce--eeeeeeEEecCCCC
Q 015821 302 AFNMAV--IGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~--l~Gr~I~V~~a~~~ 321 (399)
.+++.. |.|+.|.|.++.++
T Consensus 76 ~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 76 YAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp HHHHSCEEETTEEEEEEECSCS
T ss_pred HhcCCCceeCCcEEEEEecccc
Confidence 588765 78999999998753
No 130
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.7e-15 Score=120.70 Aligned_cols=77 Identities=17% Similarity=0.300 Sum_probs=69.9
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.. +|||||+|.+.++|..|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------~g~afV~f~~~~~a~~A~~ 79 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------------------KGYSFVRFSTHESAAHAIV 79 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 34689999999999999999999999999999988432 389999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCc
Q 015821 302 AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.+..
T Consensus 80 ~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 80 SVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp HHTTCEETTEECEEECCCCCC
T ss_pred HcCCCEECCcEEEEEecCCCC
Confidence 799999999999999998654
No 131
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=117.05 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=63.6
Q ss_pred cCEEEEecCCCCC------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 225 LRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 225 ~rtVfVgNLP~~v------Tee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
+++|||+|||+.+ |+++|+.+|++||.|.+|.|++ . +|.++|||||+|.+.++|.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~----~---------------~g~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE----E---------------DGKTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC----B---------------TTBCCCEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC----C---------------CCcEeEEEEEEECCHHHHH
Confidence 3789999999999 7899999999999999998741 2 2345699999999999999
Q ss_pred HHH-HccCceeeee-eeEEe
Q 015821 299 AAL-AFNMAVIGGN-HIRLD 316 (399)
Q Consensus 299 ~Al-~lng~~l~Gr-~I~V~ 316 (399)
.|+ .|||..|.|+ .|+|.
T Consensus 62 ~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 62 DAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHHTTSSSCCCSSSSCCCCC
T ss_pred HHHHHhcCcccCCceeEEeC
Confidence 999 5999999999 88763
No 132
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-15 Score=124.41 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=70.5
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|.. .++.+. .++.++|||||+|.+.++|..||
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~ 75 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV-----------------RTGTNRKFGYVDFESAEDLEKAL 75 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE-----------------EEETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC-----------------CCCCcCcEEEEEECCHHHHHHHH
Confidence 344789999999999999999999999999876 333322 23456799999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCc
Q 015821 302 AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.+..
T Consensus 76 ~l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 76 ELTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp HGGGCCBTTBCCEEECCSCCC
T ss_pred hcCCcEECCcEEEEEEcCCCC
Confidence 999999999999999997643
No 133
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=119.97 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=67.6
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...++|||+|||+++|+++|+.+|+.||.|.+|.|++ .+|||||+|.+.++|..|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-----------------------GKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4478999999999999999999999999999998743 14899999999999999994
Q ss_pred -c--cCceeeeeeeEEecCCCCc
Q 015821 303 -F--NMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 303 -l--ng~~l~Gr~I~V~~a~~~~ 322 (399)
| ++..|.|+.|.|.++.+..
T Consensus 70 ~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 70 YYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHHSCCEETTEECEEEECSCSS
T ss_pred HhccCCceECCcEEEEEEcCccc
Confidence 4 5678999999999997644
No 134
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=120.56 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=67.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|++||.|..|.|++ ++|||||+|.+.++|..|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----------------------FKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999998732 1489999999999999999
Q ss_pred HccCc--eeeeeeeEEecCCCCc
Q 015821 302 AFNMA--VIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~--~l~Gr~I~V~~a~~~~ 322 (399)
.|++. .|.|+.|.|.++.+..
T Consensus 70 ~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 70 FAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp HHHHSCCBSSSSBCEEEECSSSS
T ss_pred HhccCCceECCEEEEEEEccCcc
Confidence 47654 5899999999997654
No 135
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=4.4e-15 Score=124.65 Aligned_cols=79 Identities=20% Similarity=0.138 Sum_probs=68.8
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G-~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
+...++|||+|||+++|+++|+++|+.|| .|..|.|.. . .++|||||+|.+.++|+.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~------~---------------~~rGfaFV~F~~~e~A~~A 83 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT------R---------------DFDGTGALEFPSEEILVEA 83 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS------C---------------SSSCCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc------C---------------CCCCEEEEEECCHHHHHHH
Confidence 44568899999999999999999999999 898887722 1 1459999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCC
Q 015821 301 L-AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~ 321 (399)
| .|||..|.|+.|.|.++..+
T Consensus 84 i~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 84 LERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HHHTTTEEETTEEEEEEESCC-
T ss_pred HHHcCCCEECCeEEEEEECCCC
Confidence 9 69999999999999998654
No 136
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=3.3e-15 Score=120.39 Aligned_cols=79 Identities=25% Similarity=0.338 Sum_probs=69.8
Q ss_pred CCcCEEEEecCCCCCcHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~----~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
...++|||+|||+++|+++|+ .+|+.||.|..|.++. ++.++|||||+|.+.++|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--------------------~~~~~g~afV~f~~~~~A~ 65 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--------------------SLKMRGQAFVIFKEVSSAT 65 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--------------------HHHHTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--------------------CCCcCcEEEEEeCCHHHHH
Confidence 347899999999999999999 9999999999998732 1234699999999999999
Q ss_pred HHH-HccCceeeeeeeEEecCCCC
Q 015821 299 AAL-AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|+ .|||..|.|+.|.|.++.+.
T Consensus 66 ~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 66 NALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHhCCCEECCcEEEEEEccCC
Confidence 999 59999999999999999764
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=8.6e-15 Score=118.81 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=70.1
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+.+|+++|+.+|+.||.|..|+|.. ++|||||+|.+.++|..|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----------------------~kg~afV~f~~~~~a~~a~ 68 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----------------------DKGFGFIRLETRTLAEIAK 68 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----------------------TTTEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999998842 2489999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.+..
T Consensus 69 ~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 69 VELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp HHHTTCCBTTBCCEEEESSCCS
T ss_pred HHhCCCEeCCceEEEEEcCCCC
Confidence 799999999999999997643
No 138
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.56 E-value=4.8e-15 Score=128.02 Aligned_cols=83 Identities=25% Similarity=0.390 Sum_probs=72.9
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|+.||
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-----------------~g~~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY-----------------TKESRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS-----------------SSSCCSCCEEECSCHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----------------CCccceEEEEEECCHHHHHHHHH
Confidence 3468899999999999999999999999999999865431 2346799999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCc
Q 015821 302 AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.+..
T Consensus 108 ~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 108 AMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp TTTTCCSSSSCCEEEECCCCC
T ss_pred HcCCCEECCEEEEEEECCCCC
Confidence 599999999999999997654
No 139
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=7.2e-15 Score=126.18 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=68.6
Q ss_pred CCcCEEEEecCCCCCcHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~----~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
...++|||+|||+.+++++|+ .+|++||.|.+|.+.. ++.++|||||+|.+.++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--------------------~~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--------------------SDDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--------------------CCSSCCCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--------------------CCCcCCEEEEEECCHHHHH
Confidence 346899999999999999865 7999999999887722 1235699999999999999
Q ss_pred HHH-HccCceeeeeeeEEecCCCC
Q 015821 299 AAL-AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|+ .|||..|.|+.|.|.++...
T Consensus 87 ~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 87 AFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp HHHHHSTTCCCTTSCCEEEECCCC
T ss_pred HHHHHHCCCEeCCCEEEEEEccCc
Confidence 999 69999999999999999754
No 140
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=123.87 Aligned_cols=77 Identities=18% Similarity=0.334 Sum_probs=67.9
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+++|+.||.|.+|+|+++ +|||||+|.+.++|..|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------------------GTEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 34789999999999999999999999999999998442 489999999999999999
Q ss_pred Hcc--CceeeeeeeEEecCCCCc
Q 015821 302 AFN--MAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~ln--g~~l~Gr~I~V~~a~~~~ 322 (399)
.++ +..|.|+.|.|.++.+..
T Consensus 86 ~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 86 YYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHHCCCBTTBCCEEEECSSSS
T ss_pred HhccCCceECCeEEEEEEccCCC
Confidence 466 468999999999997654
No 141
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-14 Score=118.50 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=69.2
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+++|+.||.|..|.|+.+ |||||+|.+.++|+.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------------------------g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------------------------GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------------------------TEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------------------------CEEEEEECCHHHHHHHHH
Confidence 44689999999999999999999999999999988331 79999999999999999
Q ss_pred HccCceeee-----eeeEEecCCCCcc
Q 015821 302 AFNMAVIGG-----NHIRLDRACPPRK 323 (399)
Q Consensus 302 ~lng~~l~G-----r~I~V~~a~~~~k 323 (399)
.||+..|.| +.|.|.++.+...
T Consensus 69 ~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 69 KLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp HSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred HHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 599999999 9999999987543
No 142
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=7.1e-15 Score=130.69 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=71.8
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.++. +|.++|||||+|.+.++|..|| .
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-----------------TGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC-----------------CCcEeeEEEEEECCHHHHHHHHHH
Confidence 468899999999999999999999999999999976542 3445799999999999999999 5
Q ss_pred ccCceeeeeeeEEecCCCC
Q 015821 303 FNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (399)
||+..|.|+.|.|.++.+.
T Consensus 134 l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 134 LNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HTTCEETTEECEEEESEEC
T ss_pred hCCCEECCEEEEEEEecCC
Confidence 9999999999999998654
No 143
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=127.36 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=68.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCe----eEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEI----DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I----~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.++|||+|||+++|+++|+++|+.||.| ..|+|+.+. +|+++|||||+|.+.++|++|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~------------------~gr~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP------------------DGRPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT------------------TSCEEEEEEECCSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC------------------CCCEeeEEEEEECCHHHHHHH
Confidence 6889999999999999999999999975 688886642 234569999999999999999
Q ss_pred HHccCceeeeeeeEEecCCC
Q 015821 301 LAFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~ 320 (399)
|..|+..|.||.|.|..+.+
T Consensus 85 l~~~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 85 LRKHKDLLGKRYIELFRSTA 104 (123)
T ss_dssp HTTTTEESSSCEECCEEECH
T ss_pred HHhCCCeeCCeEEEEEECCH
Confidence 98899999999999988753
No 144
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=9.4e-15 Score=118.15 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=68.5
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|.+|.+.+ .+|||||+|.+.++|+.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-----------------------~~g~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----------------------GDSFAYIQYESLDAAQAACA 71 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----------------------SSCCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3468899999999999999999999999999998832 1489999999999999999
Q ss_pred HccCceee--eeeeEEecCCCC
Q 015821 302 AFNMAVIG--GNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~--Gr~I~V~~a~~~ 321 (399)
.||+..|. |+.|.|.++.++
T Consensus 72 ~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 72 KMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HHTTCBCSSSSCBCEEEECCCC
T ss_pred HHCCCEeCCCCcEEEEEECCCC
Confidence 59999999 999999999764
No 145
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.8e-15 Score=119.36 Aligned_cols=75 Identities=19% Similarity=0.324 Sum_probs=68.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|.+|++.. ++|||||+|.+.++|..|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~ 81 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIV 81 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999998841 3589999999999999999
Q ss_pred HccCceeeeeeeEEecCCC
Q 015821 302 AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~ 320 (399)
.||+..|.|+.|.|.++.+
T Consensus 82 ~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 82 ALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HHTTCEETTEECCCCBCCC
T ss_pred HhCCCeECCeEEEEEeccC
Confidence 6999999999999999864
No 146
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=2.1e-14 Score=117.50 Aligned_cols=76 Identities=28% Similarity=0.447 Sum_probs=68.8
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+++|+.||.|..|.|+ +|||||+|.+.++|..||
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~ 63 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAME 63 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHH
Confidence 346889999999999999999999999999999872 379999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCcc
Q 015821 302 AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.||+..|.|+.|.|.++.++..
T Consensus 64 ~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 64 EMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp HHTTEEETTEEEEEEECCCCCC
T ss_pred HHCCCccCCCEEEEEEcCCCcc
Confidence 5999999999999999976543
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.2e-15 Score=119.72 Aligned_cols=75 Identities=27% Similarity=0.470 Sum_probs=67.9
Q ss_pred CCcCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~-~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
...++|||+|||+ .+|+++|+.+|+.||.|.+|.|. +|||||+|.+.++|..|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 3478999999999 99999999999999999999882 389999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..+.|+.|.|.++.+..
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECCC
T ss_pred HHcCCCeeCCcEEEEEEcCcCC
Confidence 599999999999999987544
No 148
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=3.5e-15 Score=121.63 Aligned_cols=80 Identities=15% Similarity=0.352 Sum_probs=70.8
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...++|||+|||+++|+++|+.+|+.||.|.+|+|++++ ++.++|||||+|.+.++|+.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR------------------TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT------------------TSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC------------------CCCccceEEEEECCHHHHHHHHh
Confidence 346899999999999999999999999999999997653 23456999999999999999999
Q ss_pred ccCceeeeeeeEEecCCCC
Q 015821 303 FNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (399)
++..|.|+.|.|.++.+.
T Consensus 69 -~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 69 -SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp -CCCEETTEECEEEEEEEC
T ss_pred -CCCeECCEEEEEEECCcC
Confidence 999999999999988643
No 149
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=117.05 Aligned_cols=78 Identities=28% Similarity=0.309 Sum_probs=67.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...++|||+|||+.+|+++|+.+|+.||.|..+ . . ++.++|||||+|.+.++|..|+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~------~---------------~~~~~g~afV~f~~~~~a~~A~~ 71 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S------Q---------------DGKSKGIAYIEFKSEADAEKNLE 71 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E------E---------------TTEEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C------C---------------CCCcceEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999987655 1 1 23456999999999999999994
Q ss_pred -ccCceeeeeeeEEecCCCCc
Q 015821 303 -FNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~ 322 (399)
||+..|.|+.|.|.++.++.
T Consensus 72 ~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 72 EKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp HTTEEEETTEEEEEEECSSSC
T ss_pred HhCCCEECCeEEEEEEcCCCC
Confidence 99999999999999987543
No 150
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=120.26 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=69.2
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+.+|+.||.|..|.+..... ++.++|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-----------------~g~~~g~afV~f~~~~~a~~Ai~ 85 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-----------------TGRMRGQAFITFPNKEIAWQALH 85 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-----------------CSSSCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-----------------CCccceEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999984432221111 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCcc
Q 015821 302 AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.||+..|.|+.|.|.++.+...
T Consensus 86 ~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 86 LVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp HSTTCBCSSCBCEEEECCCCSC
T ss_pred HhCCCEeCCcEEEEEEccCCCC
Confidence 5999999999999999986543
No 151
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=1.7e-14 Score=119.78 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=69.4
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+.+|+.||.|..|.|+ +|||||+|.+.++|..|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999883 289999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.|||..|.|+.|.|.++.++.
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 83 EEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp HHHTTCEETTEECEEESCSCCC
T ss_pred HHcCCCEECCeEEEEEEecCCC
Confidence 599999999999999997654
No 152
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=6.5e-15 Score=122.84 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=67.2
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+.+|++||.|..|.|+. ++|||||+|.+.++|+.|+ .
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHHH
Confidence 468999999999999999999999999999988732 3589999999999999999 6
Q ss_pred ccCceeeeeeeEEecCCC
Q 015821 303 FNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (399)
|||..|.|+.|.|.++..
T Consensus 66 l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 66 LAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp HTTCBSSSSBCEEEEEET
T ss_pred hCCCEECCeEEEEEECCC
Confidence 999999999999999853
No 153
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=8.1e-15 Score=125.80 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=68.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCee--EEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEID--SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~--~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
...++|||+|||+++|+++|+++|+.| .|. +|+|++++ .|+++|||||+|.+.++|++|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~------------------~GrsrGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP------------------EGKITGEAFVQFASQELAEKA 100 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS------------------SSSSCSEEEEEESSTTHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC------------------CCCCceEEEEEECCHHHHHHH
Confidence 456889999999999999999999999 566 88886543 134679999999999999999
Q ss_pred HHccCceeeeeeeEEecCCC
Q 015821 301 LAFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~ 320 (399)
|.+++..|.||.|.|..+.+
T Consensus 101 l~~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 101 LGKHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp HTTTTCCBTTBCCCCEEECH
T ss_pred HHHCCCEECCEEEEEEECCH
Confidence 98888999999999988753
No 154
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.53 E-value=1.7e-14 Score=125.94 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=70.8
Q ss_pred CCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
.....++|||+|||+++|+++|+.+|+.||.|.+|+|+++ ++|||||+|.+.++|..|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A 126 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADA 126 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHH
Confidence 3445799999999999999999999999999999998442 258999999999999999
Q ss_pred H-HccCceeeeeeeEEecCCCC
Q 015821 301 L-AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~ 321 (399)
+ .|||..|.|+.|.|.++.++
T Consensus 127 ~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 127 VRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHcCCCEECCeEEEEEEcCCC
Confidence 9 59999999999999998764
No 155
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=2.1e-14 Score=118.80 Aligned_cols=74 Identities=26% Similarity=0.479 Sum_probs=68.1
Q ss_pred CcCEEEEecCCCC-CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 224 LLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 224 ~~rtVfVgNLP~~-vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
..++|||+|||+. +|+++|+.+|+.||.|..|.| ++|||||+|.+.++|+.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------------------------~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------------------------HKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------------------------ETTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------------------------eCCEEEEEECCHHHHHHHHH
Confidence 4589999999999 999999999999999999987 1389999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCc
Q 015821 302 AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.++.
T Consensus 81 ~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHTTCEETTEECCEEESCCCC
T ss_pred HcCCCEECCeEEEEEECCCCC
Confidence 799999999999999997544
No 156
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=115.56 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=66.8
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCC-eeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~-I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
...++|||+|||+++|+++|+.+|+.||. |..+.++ ++|||||+|.+.++|..|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~ 61 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAI 61 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHH
Confidence 34688999999999999999999999999 6655551 2489999999999999999
Q ss_pred -HccC-ceeeeeeeEEecCCCCc
Q 015821 302 -AFNM-AVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 -~lng-~~l~Gr~I~V~~a~~~~ 322 (399)
.||+ ..|.|+.|.|.++.+..
T Consensus 62 ~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 62 ETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp HHHTTTCEETTEECEEEECCCCC
T ss_pred HHccCCeeECCEEEEEEEccCcc
Confidence 5999 99999999999997654
No 157
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=1.9e-14 Score=113.42 Aligned_cols=72 Identities=26% Similarity=0.546 Sum_probs=65.4
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhccc----C-------CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEee
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVF 291 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~----G-------~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F 291 (399)
...++|||+|||+++|+++|+.+|++| | .|.+|++.. ++|||||+|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----------------------~kg~afV~f 60 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEF 60 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----------------------SSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----------------------CCcEEEEEc
Confidence 457899999999999999999999999 8 899888732 248999999
Q ss_pred CCHHHHHHHHHccCceeeeeeeEEec
Q 015821 292 KSEQSTEAALAFNMAVIGGNHIRLDR 317 (399)
Q Consensus 292 ~s~e~A~~Al~lng~~l~Gr~I~V~~ 317 (399)
.+.++|..|+.||+..|.|+.|.|.+
T Consensus 61 ~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 61 RSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred CCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 99999999999999999999999976
No 158
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=3.5e-15 Score=130.12 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=70.3
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...++|||+|||+++|+++|+++|+.|| |.+|+|+.++ .+.++|||||+|.+.++|+.||.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~------------------~g~srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP------------------DGRVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS------------------SSCSSCCCEEECSHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC------------------CCCCceEEEEEeCCHHHHHHHHh
Confidence 3468899999999999999999999999 6688886543 13467999999999999999999
Q ss_pred ccCceeeeeeeEEecCCCCc
Q 015821 303 FNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (399)
+|+..|.|+.|.|..+.+..
T Consensus 105 ~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 105 KDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CCSCSSSSCCCCCEECCCSC
T ss_pred hCCCEECCEEEEEEECCCCC
Confidence 99999999999999987543
No 159
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=121.72 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCcCEEEEecCCCC-CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~-vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~A 300 (399)
....++|||+|||++ +|+++|+.+|+.||.|.+|+|++ ++|||||+|.+.++|..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~A 78 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----------------------MKSQAFIEMETREDAMAM 78 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHH
Confidence 345789999999998 99999999999999999999832 258999999999999999
Q ss_pred H-Hcc--CceeeeeeeEEecCCCCc
Q 015821 301 L-AFN--MAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 301 l-~ln--g~~l~Gr~I~V~~a~~~~ 322 (399)
+ .|+ +..|.|+.|.|.++....
T Consensus 79 i~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 79 VDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp HHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred HHHhccCCceECCEEEEEEECcccc
Confidence 9 465 456999999999997543
No 160
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5e-14 Score=114.62 Aligned_cols=82 Identities=27% Similarity=0.350 Sum_probs=68.7
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+++|+++|+++|+.|+ .|.++.++ . ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~--~---------------~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR--E---------------TGSSKGFGFVDFNSEEDAKAAK 71 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS--S---------------SCSEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC--C---------------CCCcCcEEEEEECCHHHHHHHH
Confidence 34578899999999999999999999885 45565443 1 2345699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCCcc
Q 015821 302 -AFNMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k 323 (399)
.||+..|.|+.|.|.++.++..
T Consensus 72 ~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 72 EAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp HHHTTCEETTEECEEEECCCCCS
T ss_pred HHhCCCeECCeEEEEEEecCCCC
Confidence 5999999999999999987543
No 161
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=8e-16 Score=128.65 Aligned_cols=85 Identities=22% Similarity=0.241 Sum_probs=73.0
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeE--------EEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--------VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE 294 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~--------I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~ 294 (399)
...++|||+|||+++|+++|+.+|+.||.|.. |+|+.++ .++.++|||||+|.+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-----------------~~g~~~g~afV~f~~~ 67 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR-----------------ETGKLKGEATVSFDDP 67 (116)
Confidence 44688999999999999999999999999988 7775543 1344679999999999
Q ss_pred HHHHHHH-HccCceeeeeeeEEecCCCCccC
Q 015821 295 QSTEAAL-AFNMAVIGGNHIRLDRACPPRKK 324 (399)
Q Consensus 295 e~A~~Al-~lng~~l~Gr~I~V~~a~~~~k~ 324 (399)
++|..|| .||+..|.|+.|.|.++.+....
T Consensus 68 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 68 PSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 9999999 59999999999999999865443
No 162
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=1.4e-14 Score=136.01 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=70.9
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccC--CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G--~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
..++|||+|||+++|+++|+++|+.|| .|.+|+|++++. ++.++|||||+|.+.++|.+||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~-----------------tg~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-----------------NGQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT-----------------TCCEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC-----------------CCccceEEEEEECCHHHHHHHH
Confidence 467899999999999999999999999 999999977542 3456799999999999999999
Q ss_pred -HccCceeeeeeeEEecCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~ 320 (399)
.||+..|.|+.|.|.++.+
T Consensus 130 ~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTSTTSCBTTBCCEEEECCH
T ss_pred HHcCCCeECCEEeEEEECCC
Confidence 5999999999999999864
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=123.27 Aligned_cols=85 Identities=25% Similarity=0.250 Sum_probs=68.8
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEE--Eeee-cccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR--IRSV-PIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~--i~~~-~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
....++|||+|||+++|+++|+.+|+.||.|..|. ++.+ ... .++.++|||||+|.+.++|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---------------~~g~~~g~afV~f~~~~~A~ 106 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---------------KEGRMKGQAFIGLPNEKAAA 106 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---------------EETTTEEEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---------------cCCCcccEEEEEeCCHHHHH
Confidence 34468999999999999999999999999987641 0000 000 13456799999999999999
Q ss_pred HHH-HccCceeeeeeeEEecCCCC
Q 015821 299 AAL-AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|| .|||..|.|+.|.|.++.+.
T Consensus 107 ~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 107 KALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHHhCCCEeCCcEEEEEECCCC
Confidence 999 59999999999999999754
No 164
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.4e-14 Score=111.70 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=66.1
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
..++|||+|||+++|+++|+.+|+.||.|.+|.+ ++. ++ + ||||+|.+.++|..||.|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~--~~~-----------------~g--~-~afV~f~~~~~a~~ai~l 64 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM--DKD-----------------KG--V-FAIVEMGDVGAREAVLSQ 64 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE--CSS-----------------SC--C-EEEEEESSHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE--cCC-----------------CC--c-EEEEEECCHHHHHHHHhc
Confidence 4689999999999999999999999999998722 210 11 2 999999999999999999
Q ss_pred cCceeeeeeeEEecCCCCc
Q 015821 304 NMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~ 322 (399)
|+..|.|+.|.|.++.+..
T Consensus 65 ~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 65 SQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp SCCEETTEECCCBCSCCSC
T ss_pred CCeEECCEEEEEEECCcCC
Confidence 9999999999999886543
No 165
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.9e-14 Score=113.97 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=68.0
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEE-EeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~-i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
..++|||+|||+++|+++|+.+|+.||.|.+|+ |+.++ ..|.|||+|.+.++|..|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---------------------~~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---------------------ETAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---------------------SSEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---------------------CCCEEEEEECCHHHHHHHHH
Confidence 368899999999999999999999999999995 64432 1356999999999999999
Q ss_pred HccCceeeeeeeEEecCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (399)
.||+..|.|+.|.|.++.+.
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 73 KLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHTTCBCSSCBCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCcc
Confidence 59999999999999999765
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.50 E-value=4.3e-14 Score=113.31 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=60.5
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
.....+|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~-- 63 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQS-- 63 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHH--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHH--
Confidence 345789999999999999999999999999999988441 35999999999999984
Q ss_pred HccCce--eeeeeeEEecCCCC
Q 015821 302 AFNMAV--IGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~--l~Gr~I~V~~a~~~ 321 (399)
+++.. +.|+.|.|.++.++
T Consensus 64 -~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 64 -LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp -HTTCEEEETTEEEEEEECC--
T ss_pred -HcCCCcccCCEEEEEEEcCCC
Confidence 34444 46999999998764
No 167
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=3.2e-14 Score=124.38 Aligned_cols=80 Identities=19% Similarity=0.310 Sum_probs=71.3
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
.++|||+|||+++|+++|+++|+.||.|..|+++.++ . +|.++|||||+|.+.++|.+|+.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~---------------~g~~~g~afV~f~~~~~a~~A~~~~ 149 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK--D---------------TGQSRGFGFVTYDSADAVDRVCQNK 149 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS--S---------------SSTTSEEEEEEESSHHHHHHHHHCS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC--C---------------CCccceEEEEEECCHHHHHHHHhCC
Confidence 4679999999999999999999999999999985543 1 3456799999999999999999999
Q ss_pred CceeeeeeeEEecCCCC
Q 015821 305 MAVIGGNHIRLDRACPP 321 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (399)
+..|.|+.|.|.++.++
T Consensus 150 ~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECSSSSCEEEEECCCC
T ss_pred CEEeCCeEEEEeecCCC
Confidence 99999999999998753
No 168
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.5e-13 Score=111.07 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=67.0
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|| ++|+++|+.+|+.||.|..|.|. .++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----------------------~~~g~afV~f~~~~~a~~Ai~ 67 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----------------------PPRNCAFVTYEKMESADQAVA 67 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----------------------TTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----------------------CCCCEEEEEECCHHHHHHHHH
Confidence 45689999996 99999999999999999999882 13589999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCc
Q 015821 302 AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.||+..|.|+.|.|.++.++.
T Consensus 68 ~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 68 ELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp HTTTEEETTEEEEEECCSSCC
T ss_pred HhCCCeECCeEEEEEECCCCC
Confidence 799999999999999997643
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.3e-13 Score=119.83 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=71.8
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+.+|+++|+++|+.||.|..|.++.++. ++.++|||||+|.+.++|..|+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-----------------TGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-----------------TCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC-----------------CCCcceEEEEEeCCHHHHHHHH
Confidence 34468899999999999999999999999999999976541 2345699999999999999999
Q ss_pred -HccCceeeeeeeEEecCC
Q 015821 302 -AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~ 319 (399)
.|||..|.|+.|.|.++.
T Consensus 147 ~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 147 DSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHTTCEETTEECEEEESC
T ss_pred HHhCCCccCCcEEEEEecC
Confidence 599999999999999985
No 170
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.49 E-value=4e-14 Score=115.84 Aligned_cols=61 Identities=23% Similarity=0.397 Sum_probs=58.2
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+++|+++|+++|++| |.|..|+|++|+.+|.++|||||+|.+.++|.+||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai 78 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI----GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHH
Confidence 45789999999999999999999999 99999999999999999999999999999999985
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.8e-14 Score=111.91 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=64.6
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
..++|||+|||+++|+++|+.+|+.||.|.+|+|+.+ ++|||||+|.+.++|++|+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHTTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHHhcC
Confidence 4689999999999999999999999999999988431 359999999999999865433
Q ss_pred cCceeeeeeeEEecCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k 323 (399)
...+.|+.|.|.++.++..
T Consensus 62 -~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 62 -DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp -EEEETTEEEEEECCCCCCC
T ss_pred -CceeCCEEEEEEecCCCCC
Confidence 4456899999999876543
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.48 E-value=1e-13 Score=124.29 Aligned_cols=83 Identities=17% Similarity=0.375 Sum_probs=71.1
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHc
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~l 303 (399)
..++|||+|||+++|+++|+++|+.||.|..|+|+.++ . ++.++|||||+|.+.++|.+||..
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~---------------~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR--G---------------SGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT--T---------------TCCEEEEEEEEESSHHHHHHHHHC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC--C---------------CCCccceEEEEECCHHHHHHHHHh
Confidence 35889999999999999999999999999999997654 1 234569999999999999999987
Q ss_pred cCceeeeeeeEEecCCCCcc
Q 015821 304 NMAVIGGNHIRLDRACPPRK 323 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k 323 (399)
++..|.|+.|.|.++.+...
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp SCCEETTEECEEEECC----
T ss_pred CCcEECCEEEEEEecCChhH
Confidence 89999999999999986543
No 173
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.48 E-value=9.6e-15 Score=117.54 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=57.2
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCC-CeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G-~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+++|||+|||+++|+++|+++|++| | .|..|+|++|+.+|.++|||||+|.+.++|.+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~----G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai 61 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH----GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWM 61 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH----TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh----CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 4789999999999999999999999 8 7999999999999999999999999999999985
No 174
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.48 E-value=1.1e-13 Score=126.68 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=69.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
.++|||+|||+++|+++|+.+|++||.|.+|+|+++. ++.++|||||+|.+.++|..|+.+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~------------------~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL------------------HKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT------------------TCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC------------------CCCcccEEEEEECCHHHHHHHHHhC
Confidence 6899999999999999999999999999999997653 1345699999999999999999866
Q ss_pred CceeeeeeeEEecCCC
Q 015821 305 MAVIGGNHIRLDRACP 320 (399)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (399)
+..|.|+.|.|.+...
T Consensus 171 ~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 171 GQKYKETDLLILFKDD 186 (193)
T ss_dssp TCEETTEECEEEETTT
T ss_pred CCeECCEEEEEEEhHH
Confidence 7799999999998764
No 175
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=8.2e-14 Score=125.86 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=72.2
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|..||
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~------------------~g~~kG~afV~F~~~~~A~~Ai 146 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR------------------SGRSLGTADVHFERRADALKAM 146 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT------------------TSSCSCCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCEeeEEEEEeCCHHHHHHHH
Confidence 3456899999999999999999999999999999985543 2345699999999999999999
Q ss_pred -HccCceeeeeeeEEecCCCC
Q 015821 302 -AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (399)
.||+..|.|+.|.|.++...
T Consensus 147 ~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 147 KQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp HHSTTCBCSSSBCEEEEESSG
T ss_pred HHhCCCEECCEEEEEEEecCC
Confidence 59999999999999998653
No 176
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.47 E-value=1.7e-13 Score=124.65 Aligned_cols=81 Identities=22% Similarity=0.452 Sum_probs=72.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++|||+|||+.+|+++|+++|+.||.|..|+|+.++. ++.++|||||+|.+.++|..|+ .|
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----------------~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT-----------------TGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC-----------------CCCcCceEEEEecCHHHHHHHHHHc
Confidence 57899999999999999999999999999999976542 2345699999999999999999 59
Q ss_pred cCceeeeeeeEEecCCCCc
Q 015821 304 NMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~ 322 (399)
|+..|.|+.|.|.++.++.
T Consensus 188 ~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp TTCBCSSSBCEEEECSSCS
T ss_pred cCCEeCCcEEEEEEecCCC
Confidence 9999999999999998653
No 177
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.47 E-value=1.1e-13 Score=110.12 Aligned_cols=73 Identities=12% Similarity=0.217 Sum_probs=66.1
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+.+|++| .|..|+|. . ++|||||+|.+.++|..|+ .
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--------~---------------~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--------R---------------NKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--------G---------------GGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--------C---------------CCcEEEEEECCHHHHHHHHHH
Confidence 46889999999999999999999999 99998872 1 3599999999999999999 5
Q ss_pred ccCceeeeeeeEEecCCC
Q 015821 303 FNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (399)
||+..+.|+.|.|.++..
T Consensus 60 l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 60 FHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp HTTEEETTEEEEEEECCC
T ss_pred hCCCeECCcEEEEEEcCC
Confidence 999999999999999853
No 178
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1.6e-13 Score=126.37 Aligned_cols=78 Identities=22% Similarity=0.386 Sum_probs=70.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++|||+|||+.+|+++|+++|+.||.|..|+|+++. +.++|||||+|.+.++|.+|| .|
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-------------------~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-------------------NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-------------------TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-------------------CCCceEEEEEeCCHHHHHHHHHHh
Confidence 4679999999999999999999999999999997653 124699999999999999999 69
Q ss_pred cCceeeeeeeEEecCCCC
Q 015821 304 NMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (399)
||..|.|+.|.|.++.+.
T Consensus 164 ng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTCEETTEECEEEECCCH
T ss_pred CCCEECCEEEEEEEcCCC
Confidence 999999999999999764
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.46 E-value=1.3e-13 Score=141.17 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=72.4
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+.+|+++|..+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|| .
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR-----------------SGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC-----------------CCCccceEEEeeccHHHHHHHHHH
Confidence 368999999999999999999999999999999966542 3445699999999999999999 7
Q ss_pred ccCceeeeeeeEEecCCCC
Q 015821 303 FNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (399)
|||..|.|+.|.|.++.+.
T Consensus 164 lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred cCCCEECCEEEEEEEeCCC
Confidence 9999999999999999754
No 180
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.45 E-value=1.2e-13 Score=121.16 Aligned_cols=77 Identities=17% Similarity=0.332 Sum_probs=69.7
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++|||+|||+.+|+++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|.+|+ .|
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA-----------------TGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-----------------TCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC-----------------CCCcceEEEEEeCCHHHHHHHHHHc
Confidence 68899999999999999999999999999999976541 2345699999999999999999 59
Q ss_pred cCceeeeeeeEEecC
Q 015821 304 NMAVIGGNHIRLDRA 318 (399)
Q Consensus 304 ng~~l~Gr~I~V~~a 318 (399)
||..|.|+.|.|.++
T Consensus 157 ~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEETTEECEEEEC
T ss_pred CCCEECCeEEEEEeC
Confidence 999999999999987
No 181
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=2.4e-13 Score=122.06 Aligned_cols=83 Identities=16% Similarity=0.286 Sum_probs=73.4
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+.+|+++|+.+|+.||.|..|.++.++. ++.++|||||+|.+.++|..|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA-----------------TGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT-----------------TCSEEEEEEEEESSSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC-----------------CCCcceEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999966541 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecCCCCc
Q 015821 302 AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (399)
.|||..|.|+.|.|.++.++.
T Consensus 175 ~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEECCCCC
Confidence 599999999999999997654
No 182
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.44 E-value=5.9e-14 Score=121.18 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=61.5
Q ss_pred eeEEEeeCCHHHHHHHH-HccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCC
Q 015821 285 VHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDL 363 (399)
Q Consensus 285 G~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~ 363 (399)
-|+|++|.+...+..|+ .+++....|+. .+.+..+ .+.....++|||+|||+.+++++|+++|+.|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~---------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~--- 71 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP---------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKY--- 71 (135)
T ss_dssp -------------------------------CCSCCS---------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGG---
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC---------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc---
Confidence 47888888888888888 57776655543 1222221 2234567899999999999999999999999
Q ss_pred CCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 364 ESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 364 ~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|.|..|.|+++..+|.++|||||+|.+.++|.+||
T Consensus 72 -G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai 106 (135)
T 2lea_A 72 -GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 106 (135)
T ss_dssp -SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHH
T ss_pred -CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 99999999999888999999999999999999885
No 183
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.44 E-value=3.4e-14 Score=115.79 Aligned_cols=61 Identities=15% Similarity=0.323 Sum_probs=57.0
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCC--CeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G--~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.-.+|||+|||+.+|+++|+++|++| | .|..|+|++|+.+|.++|||||+|.+.++|.+||
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~----G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPY----ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTT----CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhh----CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHH
Confidence 45899999999999999999999999 7 4779999999999999999999999999999885
No 184
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=114.43 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=58.6
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+.++|||+|||+.+++++|+++|++| |.|..|.|++|+.+|.++|||||+|.+.++|.+||
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~----G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai 65 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKY----GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETV 65 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHH
Confidence 56899999999999999999999999 99999999999999999999999999999999985
No 185
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.44 E-value=1.9e-13 Score=114.53 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=63.2
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+++|+++|+++|+.||.|..|.|+.+ |||||+|.+.++|+.|| .
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------------------------g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------------------------GTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------------------------SEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------------------------CEEEEEECCHHHHHHHHHH
Confidence 3578999999999999999999999999999988221 79999999999999999 5
Q ss_pred ccCceeeeee-----eEEecCCCC
Q 015821 303 FNMAVIGGNH-----IRLDRACPP 321 (399)
Q Consensus 303 lng~~l~Gr~-----I~V~~a~~~ 321 (399)
||+..|.|+. |.|....+.
T Consensus 71 l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 71 LDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp HTTCBCCCTTSCCCBCEEEECC--
T ss_pred hCCCEECCcEeeeEEEEeccCCCC
Confidence 9999999998 777666543
No 186
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=6.2e-13 Score=114.68 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=68.1
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcee-EEEeeCCHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAAL 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~-AFV~F~s~e~A~~Al 301 (399)
..-..|||+||++.+|+++|+.+|+.||.|.+|+|... ++|| |||+|.+.++|..|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai 83 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAK 83 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHH
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHH
Confidence 33466889999999999999999999999999988442 1367 999999999999999
Q ss_pred -HccCceeee--eeeEEecCCCCc
Q 015821 302 -AFNMAVIGG--NHIRLDRACPPR 322 (399)
Q Consensus 302 -~lng~~l~G--r~I~V~~a~~~~ 322 (399)
.|||..|.| +.|+|+++.+..
T Consensus 84 ~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 84 LSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HHHTTCEEETTEEEEEEEECSCSS
T ss_pred HHcCCCeecCCCcEEEEEecCCCc
Confidence 699999988 899999998653
No 187
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.4e-13 Score=111.86 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=61.6
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+++|+++|+++|++||.|. +.++.+.. +. ..|.++|||||+|.+.++|+.||
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~--~~------------~~g~~~G~aFV~f~~~~~a~~Ai~ 70 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAE--SK------------SYFPPKGYAFLLFQEESSVQALID 70 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSS--SC------------CCSCTTSEEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCC--CC------------CCCCcccEEEEEECCHHHHHHHHH
Confidence 4468899999999999999999999999998 76644321 10 11456799999999999999999
Q ss_pred HccCceeeeeeeEEecC
Q 015821 302 AFNMAVIGGNHIRLDRA 318 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a 318 (399)
.++ .+.|+.|.+..+
T Consensus 71 ~~~--~~~G~~~~~~~~ 85 (114)
T 2dnl_A 71 ACL--EEDGKLYLCVSS 85 (114)
T ss_dssp HSE--EETTEEEEEECC
T ss_pred hhh--hcCCcEEEeccC
Confidence 463 367777766654
No 188
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.43 E-value=2.1e-13 Score=107.67 Aligned_cols=63 Identities=19% Similarity=0.426 Sum_probs=59.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|++| |.|..|+|++++.+|.++|||||+|.+.++|.+||
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKF----GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999999999999999999999999999999885
No 189
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.5e-13 Score=112.04 Aligned_cols=61 Identities=18% Similarity=0.349 Sum_probs=57.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...++|||+|||+++|+++|+++|++| |.|..|+|++++. |.++|||||+|.+.++|..||
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~----G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai 69 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFV 69 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTS----SCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhc----CCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHH
Confidence 346899999999999999999999999 9999999999987 999999999999999999985
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.42 E-value=4.6e-13 Score=117.42 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=67.9
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+.+|+++|+++|+.||.|.+|++++++ +|.++|||||+|.+.++|..|+ .
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~------------------~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP------------------DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT------------------TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC------------------CCCEEEEEEEEECCHHHHHHHHHH
Confidence 46889999999999999999999999999999996653 2345699999999999999999 7
Q ss_pred ccCceee---eeeeEEecC
Q 015821 303 FNMAVIG---GNHIRLDRA 318 (399)
Q Consensus 303 lng~~l~---Gr~I~V~~a 318 (399)
|||..+. |++|.|.++
T Consensus 156 l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HTTSCCCTTCSSCCEEEEC
T ss_pred hcCCcccCCCCCCeEEEec
Confidence 9998776 499999986
No 191
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.6e-13 Score=114.49 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=65.2
Q ss_pred CcCEEEE--ecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 224 LLRTIFV--GNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 224 ~~rtVfV--gNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
..++||| ||||+++|+++|+++|++||.|.+|.|+. ++|||||+|.+.++|+.|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 4688999 77999999999999999999999987721 2489999999999999999
Q ss_pred -HccCcee-----eeeeeEEecCCC
Q 015821 302 -AFNMAVI-----GGNHIRLDRACP 320 (399)
Q Consensus 302 -~lng~~l-----~Gr~I~V~~a~~ 320 (399)
.|||..| .|+.|.|.++..
T Consensus 81 ~~lnG~~~~~~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 81 VTLNGKEVVDDLGQKITLYLNFVEK 105 (114)
T ss_dssp HHTTTCEEECTTSCEEECEEEEESC
T ss_pred HHhCCCEEccccCCCcEEEEEeccc
Confidence 6999988 789999998753
No 192
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.3e-13 Score=108.55 Aligned_cols=63 Identities=17% Similarity=0.377 Sum_probs=59.5
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.+||
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKF----GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSS----SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 99999999999989999999999999999999985
No 193
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=5.1e-13 Score=119.50 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=68.1
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
...+|||+|||+.+|+++|+.+|++||.|.+|+|... .++|||||+|.+.++|..|+ .
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---------------------~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---------------------NNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---------------------SSCEEEEEEESCHHHHHHHHHH
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---------------------CCCCEEEEEECCHHHHHHHHHH
Confidence 3567999999999999999999999999999988421 12489999999999999999 6
Q ss_pred ccCceeee--eeeEEecCCCCc
Q 015821 303 FNMAVIGG--NHIRLDRACPPR 322 (399)
Q Consensus 303 lng~~l~G--r~I~V~~a~~~~ 322 (399)
|||..|.| +.|+|.++.+..
T Consensus 104 LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 104 LDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp STTBCSSSSCSCEEEEECSSSS
T ss_pred hCCCEecCCCcEEEEEEecCCc
Confidence 99999965 999999998653
No 194
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.41 E-value=6.6e-13 Score=115.84 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=69.2
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+.+|+++|+.+|+.||.|..|.+++++. ++.++|||||+|.+.++|..|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL-----------------TGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC-----------------CCCcceEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999866541 2345699999999999999999
Q ss_pred HccCceeee--eeeEEecC
Q 015821 302 AFNMAVIGG--NHIRLDRA 318 (399)
Q Consensus 302 ~lng~~l~G--r~I~V~~a 318 (399)
.|||..|.| +.|.|.+|
T Consensus 150 ~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHTTCCCTTCSSCCEEEEC
T ss_pred HhcCCEecCCCeEEEEEeC
Confidence 599999987 99999875
No 195
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.40 E-value=8.2e-14 Score=142.72 Aligned_cols=62 Identities=15% Similarity=0.329 Sum_probs=58.9
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+.+|+++|..+|+.| |.|..|.|+.+..+|.++|||||+|.+.++|.+||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 161 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY----GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAY 161 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHH
Confidence 456899999999999999999999999 99999999999889999999999999999999986
No 196
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=1.2e-12 Score=111.99 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=64.8
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcee-EEEeeCCHHHHHHHH-Hc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~-AFV~F~s~e~A~~Al-~l 303 (399)
..|||+|||+.+|+++|+.+|++||.|.+|+|.. . .|| |||+|.+.++|..|+ .|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----------------------~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----------------------NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----------------------SSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 4478999999999999999999999999998832 0 176 999999999999999 69
Q ss_pred cCceeee--eeeEEecCCCCc
Q 015821 304 NMAVIGG--NHIRLDRACPPR 322 (399)
Q Consensus 304 ng~~l~G--r~I~V~~a~~~~ 322 (399)
||..|.| +.|+|.++.+..
T Consensus 83 nG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 83 NGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp TTCCCBTTBSEEEEECCSCSC
T ss_pred CCCEecCCCeEEEEEEecCCc
Confidence 9999987 689999997654
No 197
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.40 E-value=3.8e-13 Score=119.49 Aligned_cols=107 Identities=13% Similarity=0.188 Sum_probs=59.3
Q ss_pred EeeCCHHHHHHHH-HccCceee--eeeeEEecCCCCccCC-----------CCCCCCccCcccceeecCCCCCCCHHHHH
Q 015821 289 IVFKSEQSTEAAL-AFNMAVIG--GNHIRLDRACPPRKKL-----------KGEDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (399)
Q Consensus 289 V~F~s~e~A~~Al-~lng~~l~--Gr~I~V~~a~~~~k~~-----------~~~~~~~~~~~~tLfV~NLp~~~teedL~ 354 (399)
.+|.+.+++..|+ .+++.... |+.+.+.+........ ....+......++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999988 57776554 6666665532211000 00112223456889999999999999999
Q ss_pred HHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 355 ~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+|+.| |.|..|.|+++..+|.++|||||+|.+.++|..||
T Consensus 91 ~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 131 (165)
T 1rk8_A 91 EKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 131 (165)
T ss_dssp HHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHH
T ss_pred HHhhcC----CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHH
Confidence 999999 99999999999989999999999999999999885
No 198
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.39 E-value=5.3e-13 Score=105.09 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=57.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||..+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 65 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 65 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999 99999999999888999999999999999999885
No 199
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.39 E-value=4.1e-13 Score=105.24 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=58.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+.+++++|+++|++| |.|..|.|++++.+|.++|||||+|.+.++|..||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 66 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc----CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHH
Confidence 456999999999999999999999999 99999999999889999999999999999999885
No 200
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=5.5e-13 Score=108.52 Aligned_cols=70 Identities=24% Similarity=0.255 Sum_probs=61.9
Q ss_pred cCE-EEEecCCCCCcHHH----HHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 225 LRT-IFVGNLPLKVKKKT----LIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 225 ~rt-VfVgNLP~~vTee~----L~~~Fs~~-G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
..| |||+|||+.+++++ |+.+|+.| |.|.+|. .|+|||.|.+.++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F~~~esA~ 60 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRFINQDSAE 60 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEESSHHHHH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEECCHHHHH
Confidence 455 99999999999887 55899999 5998761 189999999999999
Q ss_pred HHH-HccCceeeeeeeEEecCCCC
Q 015821 299 AAL-AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~~~ 321 (399)
.|+ .|||..|.||+|+|+++...
T Consensus 61 ~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 61 RAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp HHHHHHTTCCSSSSCCEEESSCCS
T ss_pred HHHHHhcCCccCCceEEEEecCCC
Confidence 999 69999999999999999754
No 201
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.39 E-value=9.1e-13 Score=114.46 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=67.5
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-H
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ 302 (399)
..++|||+|||+.+|+++|+.+|+.||.|..|+++.++. +|.++|||||+|.+.++|..|+ .
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV-----------------TGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC-----------------CCCccceEEEEeCCHHHHHHHHHH
Confidence 357899999999999999999999999999999966541 2345699999999999999999 5
Q ss_pred ccCceeeeee--eEEecC
Q 015821 303 FNMAVIGGNH--IRLDRA 318 (399)
Q Consensus 303 lng~~l~Gr~--I~V~~a 318 (399)
|||..|.|+. |.|.+|
T Consensus 150 l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 150 LNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HTTCCCTTCSSCCEEEEC
T ss_pred hcCCccCCCccceEEEeC
Confidence 9999999975 777764
No 202
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=6.9e-13 Score=108.13 Aligned_cols=63 Identities=17% Similarity=0.370 Sum_probs=59.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF----GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 74 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHH
Confidence 4456899999999999999999999999 99999999999989999999999999999999985
No 203
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=4.3e-13 Score=105.43 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=58.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|..||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 64 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPY----GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 64 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTT----SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999 99999999999989999999999999999999885
No 204
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.39 E-value=6.1e-13 Score=103.82 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=56.7
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|..||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 60 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 60 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHH
Confidence 689999999999999999999999 99999999999989999999999999999999885
No 205
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.38 E-value=7.8e-13 Score=112.15 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=66.5
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|| ++|+++|+.+|+.||.|.+|.|. .++|||||+|.+.++|..|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----------------------~~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----------------------PPRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----------------------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----------------------CCCCEEEEEECCHHHHHHHHH
Confidence 34789999996 79999999999999999999883 13599999999999999999
Q ss_pred HccCceeeeeeeEEecCCCC
Q 015821 302 AFNMAVIGGNHIRLDRACPP 321 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (399)
.||+..|.|+.|.|.++.+.
T Consensus 92 ~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 92 ELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp HHTTCBCSSCBCEEEECCSS
T ss_pred HhCCCEECCeEEEEEEeCCC
Confidence 79999999999999999764
No 206
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.38 E-value=2.4e-13 Score=108.53 Aligned_cols=59 Identities=17% Similarity=0.324 Sum_probs=54.2
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCC--CeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G--~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+|||+|||+.+++++|+++|+.| | .|..|+|++++.+|.++|||||+|.+.++|.+||
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~----G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai 62 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 62 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT----TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh----CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHH
Confidence 589999999999999999999999 8 8999999999999999999999999999999885
No 207
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=5.9e-13 Score=109.71 Aligned_cols=63 Identities=30% Similarity=0.509 Sum_probs=59.6
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 74 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQF----GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 74 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999 99999999999999999999999999999999885
No 208
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.1e-12 Score=105.04 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=59.7
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 74 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 74 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTT----SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 99999999999999999999999999999999885
No 209
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=9.1e-13 Score=105.56 Aligned_cols=61 Identities=13% Similarity=0.407 Sum_probs=58.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+.++|||+|||+.+++++|+++|+.| |.|..|.|+++..+|.++|||||+|.+.++|..||
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 64 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRAL 64 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHH
Confidence 56899999999999999999999999 99999999999989999999999999999999885
No 210
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=5.5e-13 Score=108.71 Aligned_cols=65 Identities=26% Similarity=0.411 Sum_probs=60.4
Q ss_pred CccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 331 PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 331 ~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+...+.++|||+|||+.+++++|+++|+.| |.|..|.|+++..+|.++|||||+|.+.++|.+||
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKY----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAE 72 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHH
Confidence 335567999999999999999999999999 99999999999999999999999999999999885
No 211
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=7.5e-13 Score=107.00 Aligned_cols=63 Identities=16% Similarity=0.307 Sum_probs=59.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeE-EEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE-AVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~-~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|++| |.|. .|+|++++.+|.++|||||+|.+.++|.+||
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATM----GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 69 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHT----TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHh----CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHH
Confidence 3457999999999999999999999999 9999 9999999989999999999999999999885
No 212
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.37 E-value=6.4e-13 Score=107.07 Aligned_cols=61 Identities=21% Similarity=0.516 Sum_probs=57.9
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|..||
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 61 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV----GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 61 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHH
Confidence 35899999999999999999999999 99999999999989999999999999999999885
No 213
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.37 E-value=9.8e-13 Score=103.96 Aligned_cols=61 Identities=25% Similarity=0.452 Sum_probs=58.0
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.+||
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGC----GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGG----CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 35899999999999999999999999 99999999999989999999999999999999986
No 214
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=8e-13 Score=106.84 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=58.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|..||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 67 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHH
Confidence 456899999999999999999999999 99999999999888999999999999999999885
No 215
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.37 E-value=2.1e-13 Score=111.32 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=58.2
Q ss_pred cccceeecCCCC------CCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPF------DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~------~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+ ++++++|+++|++| |.|..|+|++++.||.++|||||+|.+.++|.+||
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~----G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai 71 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA----GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKII 71 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc----CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 358999999999 99999999999999 99999999999999999999999999999999985
No 216
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=8.8e-13 Score=107.85 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=59.6
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.+||
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~ 75 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQY----GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL 75 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 99999999999989999999999999999999885
No 217
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.37 E-value=7.9e-13 Score=113.62 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=65.3
Q ss_pred CEEEEecC----CCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCC----HHH-
Q 015821 226 RTIFVGNL----PLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS----EQS- 296 (399)
Q Consensus 226 rtVfVgNL----P~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s----~e~- 296 (399)
..|||+|| |+.+++.+|+.+|+.||.|.+|.++.+| .++ .++|||||+|.+ ++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp--~Tg---------------~slGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDP--NSA---------------LPLHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECT--TTC---------------CEEEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCC---------------ceeeEEEEEECCCCCCcchH
Confidence 56999999 9999999999999999999999999887 344 456999999996 333
Q ss_pred ---HHHHHH---ccCceeeeeeeEEecCC
Q 015821 297 ---TEAALA---FNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 297 ---A~~Al~---lng~~l~Gr~I~V~~a~ 319 (399)
|..|+. +||..|.|+.|+|..-.
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 677764 79999999999999865
No 218
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=106.84 Aligned_cols=62 Identities=27% Similarity=0.439 Sum_probs=58.3
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhc-cCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCG-LNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~-f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+. | |.|..|+|+++. +|.++|||||+|.+.++|..||
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~----G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 68 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVY----PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 68 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHC----TTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhC----CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHH
Confidence 346789999999999999999999999 9 999999999998 8999999999999999999885
No 219
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.37 E-value=7e-13 Score=109.98 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=57.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|..||
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai 84 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 84 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc----CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999999999989999999999999999999885
No 220
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=3.1e-12 Score=106.05 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=68.6
Q ss_pred CCcCEEEEecCCC-----CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHH
Q 015821 223 KLLRTIFVGNLPL-----KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (399)
Q Consensus 223 ~~~rtVfVgNLP~-----~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A 297 (399)
..+++|+|+||.. +-++++|+++|++||.|.+|.|++++. + ++.++|||||+|.+.++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~--~--------------~~~~~G~~FV~f~~~~~A 69 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG--A--------------PDDEAVRIFLEFERVESA 69 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS--C--------------CTTTSEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC--C--------------CCCCcEEEEEEECCHHHH
Confidence 3478999999963 237899999999999999999976541 1 123569999999999999
Q ss_pred HHHH-HccCceeeeeeeEEecCCC
Q 015821 298 EAAL-AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 298 ~~Al-~lng~~l~Gr~I~V~~a~~ 320 (399)
..|+ .|||..|.||.|.|.++..
T Consensus 70 ~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 70 IKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHCCCEECCcEEEEEEcCH
Confidence 9999 6999999999999999863
No 221
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=104.79 Aligned_cols=63 Identities=30% Similarity=0.622 Sum_probs=59.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|.+||
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 75 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKY----GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 75 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTT----SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999 99999999999989999999999999999999885
No 222
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=3.5e-13 Score=103.73 Aligned_cols=59 Identities=20% Similarity=0.462 Sum_probs=56.3
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++|||+|||+++++++|+++|++| |.|..|+|++++.+|.++|||||+|.+.++|.+||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 59 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 59 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT----SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHH
Confidence 479999999999999999999999 99999999999989999999999999999999885
No 223
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.1e-13 Score=107.08 Aligned_cols=63 Identities=22% Similarity=0.489 Sum_probs=59.5
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|++++.++.++|||||+|.+.++|..||
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKY----GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 71 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHH----SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 99999999999989999999999999999999885
No 224
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=106.28 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=59.3
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEE--------EEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--------VRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~--------VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|.. |+|++++.+|.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai 80 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAI 80 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTT----SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 99999 999999989999999999999999999885
No 225
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=1.8e-12 Score=105.74 Aligned_cols=62 Identities=34% Similarity=0.523 Sum_probs=58.6
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| | |..|+|+++..+|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL----S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS----C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC----C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 7 999999999999999999999999999999986
No 226
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.36 E-value=8e-13 Score=108.15 Aligned_cols=63 Identities=16% Similarity=0.384 Sum_probs=59.3
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEF----GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHH----SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999999999999999999999999999999885
No 227
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.3e-12 Score=106.77 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=59.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 74 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQA----GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 74 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999 99999999999888999999999999999999885
No 228
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.1e-12 Score=107.75 Aligned_cols=62 Identities=26% Similarity=0.343 Sum_probs=57.3
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEE-EEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~-VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|.+| |.|.. |+|+.+ .+|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGL----EIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTC----CEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHH
Confidence 4456899999999999999999999999 89987 899998 68999999999999999999985
No 229
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.3e-12 Score=106.83 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=59.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|.|+++..+|.++|||||+|.+.++|..||
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 82 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 82 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999999999999999999999999999999885
No 230
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.35 E-value=6e-13 Score=102.14 Aligned_cols=58 Identities=19% Similarity=0.385 Sum_probs=55.5
Q ss_pred ceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 338 tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+|||+|||+.+++++|+++|++| |.|..|+|++++.+|.++|||||+|.+.++|.+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 58 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF----GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 58 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT----SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 58999999999999999999999 99999999999988999999999999999999885
No 231
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.4e-12 Score=108.60 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=59.5
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++..++.++|||||+|.+.++|.+||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai 76 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGF----GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 76 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTT----SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 4467999999999999999999999999 99999999999989999999999999999999885
No 232
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.35 E-value=3.7e-13 Score=103.21 Aligned_cols=58 Identities=26% Similarity=0.517 Sum_probs=55.7
Q ss_pred ceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 338 tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+|||+|||+++++++|+++|++| |.|..|.|++++.+|.++|||||+|.+.++|.+||
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai 58 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF----GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 58 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH----SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHH
Confidence 68999999999999999999999 99999999999999999999999999999999885
No 233
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.7e-12 Score=106.22 Aligned_cols=63 Identities=22% Similarity=0.463 Sum_probs=59.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeec-CCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH-PHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d-~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++ ..+|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~ 75 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF----GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 75 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc----CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 99999999999 778999999999999999999885
No 234
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=6.9e-13 Score=106.48 Aligned_cols=61 Identities=23% Similarity=0.476 Sum_probs=58.1
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEE-EEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV-RVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~V-rI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+.++|||+|||+.+++++|+++|+.| |.|..| +|++++.+|.++|||||+|.+.++|..||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 65 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF----GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 65 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT----SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHH
Confidence 56899999999999999999999999 999999 99999889999999999999999999985
No 235
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.35 E-value=1.9e-12 Score=107.64 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=59.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 74 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 74 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 4467899999999999999999999999 99999999999888999999999999999999885
No 236
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.2e-12 Score=108.79 Aligned_cols=62 Identities=29% Similarity=0.393 Sum_probs=58.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.+||
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV----GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH
Confidence 456899999999999999999999999 99999999999999999999999999999999885
No 237
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.2e-12 Score=106.69 Aligned_cols=63 Identities=24% Similarity=0.407 Sum_probs=59.5
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 74 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF----GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 74 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT----CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 99999999999889999999999999999999885
No 238
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=8.3e-13 Score=107.30 Aligned_cols=63 Identities=19% Similarity=0.358 Sum_probs=59.5
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|..||
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 71 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTT----SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 99999999999989999999999999999999885
No 239
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.34 E-value=1.1e-12 Score=109.81 Aligned_cols=58 Identities=21% Similarity=0.461 Sum_probs=54.2
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+|||+|||+++++++|+++|+.| |.|..|+|+++. +.++|||||+|.+.++|.+||
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~----G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai 62 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 62 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc----CCEEEEEEeecC--CCCCceEEEEECCHHHHHHHH
Confidence 4689999999999999999999999 999999999995 558999999999999999985
No 240
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=104.08 Aligned_cols=62 Identities=23% Similarity=0.435 Sum_probs=58.0
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+.+. +|.++|||||+|.+.++|..||
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAH----GTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 999999999998 7999999999999999999885
No 241
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.34 E-value=2e-12 Score=105.54 Aligned_cols=61 Identities=28% Similarity=0.481 Sum_probs=57.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...++|||+|||+.+++++|+++|+.| |.|..|+|+++. +|.++|||||+|.+.++|.+||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai 73 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF----GVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAI 73 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHH
Confidence 457999999999999999999999999 999999999997 6999999999999999999885
No 242
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.34 E-value=4.7e-13 Score=116.63 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=55.6
Q ss_pred eeEEEeeCCHHHHHHHHHccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCC
Q 015821 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLE 364 (399)
Q Consensus 285 G~AFV~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~ 364 (399)
|+||..|..++.+..++..-...+.|....-..... .........++|||+|||+++++++|+++|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~-------~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~---- 70 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDS-------EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPL---- 70 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSC----
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCc-------ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc----
Confidence 688888888887766652111222332221111000 001123456899999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 365 SSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 365 G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
| |..|+|++++. |+++|||||+|.+.++|.+||
T Consensus 71 G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 71 N-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp C-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT
T ss_pred C-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH
Confidence 8 67999999976 999999999999999999997
No 243
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.34 E-value=1.6e-12 Score=108.22 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=59.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.+||
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPF----GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 84 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGG----SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999999999988999999999999999999885
No 244
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=7.3e-13 Score=107.90 Aligned_cols=63 Identities=19% Similarity=0.479 Sum_probs=59.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|..||
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 67 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEV----GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 67 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTT----SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHH
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhc----CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999999999889999999999999999999885
No 245
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=2.9e-12 Score=112.99 Aligned_cols=76 Identities=29% Similarity=0.334 Sum_probs=66.1
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
...++|||+|||+.+|+++|+.+|+.||.|..+ . . ++.++|||||+|.+.++|.+|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~--~---------------~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----S--Q---------------DGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----C--S---------------SSSCCSEEEEECSSHHHHHHHHH
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----c--C---------------CCCCceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999987644 1 1 2345699999999999999999
Q ss_pred HccCceeeeeeeEEecCCC
Q 015821 302 AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~ 320 (399)
.|||..|.|+.|.|.++.+
T Consensus 155 ~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHTEEEETTEEEEEEECSS
T ss_pred HhCCCEECCeEEEEEecCC
Confidence 5999999999999999865
No 246
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-12 Score=105.70 Aligned_cols=61 Identities=15% Similarity=0.404 Sum_probs=57.0
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCC---CCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~---tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+.++|||+|||+.+++++|+++|+.| |.|..|+|+++.. ++.++|||||+|.+.++|.+||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~ 67 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV----GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 67 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHH
Confidence 56899999999999999999999999 9999999999876 6689999999999999999885
No 247
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=107.37 Aligned_cols=63 Identities=14% Similarity=0.376 Sum_probs=59.3
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTT----SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 4466899999999999999999999999 99999999999989999999999999999999885
No 248
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.33 E-value=1.8e-12 Score=106.84 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=59.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+.+|+.| |.|..|.|+++..+|.++|||||+|.+.++|..||
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai 85 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 85 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999999999989999999999999999999885
No 249
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.6e-12 Score=106.22 Aligned_cols=62 Identities=37% Similarity=0.600 Sum_probs=58.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCC-CCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM-RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~t-g~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| | |..|+|+++..+ |.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTS----C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHC----C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH
Confidence 3456999999999999999999999999 9 999999999887 999999999999999999985
No 250
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.33 E-value=2.1e-12 Score=103.36 Aligned_cols=62 Identities=29% Similarity=0.454 Sum_probs=58.0
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++.. |.++|||||+|.+.++|.+||
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~ 74 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA----GPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAI 74 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHH
Confidence 4467899999999999999999999999 9999999999986 999999999999999999885
No 251
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.4e-12 Score=108.84 Aligned_cols=62 Identities=26% Similarity=0.396 Sum_probs=57.9
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCe-EEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV-EAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I-~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.| ..|+|+++. +|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al 74 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGI----PVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSE 74 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTS----CCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHG
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhC----CCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 889 889999998 8999999999999999999986
No 252
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=115.07 Aligned_cols=61 Identities=16% Similarity=0.337 Sum_probs=57.2
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCC--CeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G--~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+.+++++|+++|+.| | .|..|+|++|..+|.++|||||+|.+.++|.+||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI----GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT----TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH----CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 45899999999999999999999999 8 8999999999999999999999999999999985
No 253
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.32 E-value=1.1e-12 Score=113.85 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=57.6
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCC---eEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~---I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+++|+++|+++|+.| |. |..|+|+++.. |+++|||||+|.+.++|.+||
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~----G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al 105 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDC----TIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMAL 105 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTC----CCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 88 88999999987 999999999999999999986
No 254
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=1.4e-12 Score=106.07 Aligned_cols=61 Identities=30% Similarity=0.492 Sum_probs=57.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...++|||+|||+.+++++|+++|+.| |.|..|+|+++. +|.++|||||+|.+.++|..||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai 67 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY----GSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIV 67 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHH
Confidence 356899999999999999999999999 999999999998 8999999999999999999986
No 255
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.32 E-value=3.3e-12 Score=109.40 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=59.6
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|.+||
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai 105 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 105 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTT----SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999 99999999999999999999999999999999985
No 256
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.6e-12 Score=108.24 Aligned_cols=63 Identities=19% Similarity=0.425 Sum_probs=59.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.+||
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 86 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQW----GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 86 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSS----CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHH
Confidence 3456899999999999999999999999 99999999999999999999999999999999985
No 257
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=2.4e-12 Score=121.91 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=68.5
Q ss_pred CCCcCEEEEecCCCCC---------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeC
Q 015821 222 GKLLRTIFVGNLPLKV---------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~v---------Tee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~ 292 (399)
....++|||+|||..+ |+++|+.+|++||.|.+|+|+. ++|||||.|.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------------------~kG~AFV~F~ 187 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------------------SKNCGFVKFK 187 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEES
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----------------------CCCEEEEEeC
Confidence 4457999999999998 8999999999999999999843 2589999999
Q ss_pred CHHHHHHHH-HccCcee------------eeeeeEEecCCC
Q 015821 293 SEQSTEAAL-AFNMAVI------------GGNHIRLDRACP 320 (399)
Q Consensus 293 s~e~A~~Al-~lng~~l------------~Gr~I~V~~a~~ 320 (399)
+.++|+.|+ .|++..| .|+.|.|.++..
T Consensus 188 ~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp SHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred CHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 999999999 6999999 899999999974
No 258
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.31 E-value=3e-12 Score=104.91 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=58.5
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+++. +|.++|||||+|.+.++|.+||
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 87 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVHYDR-SGRSLGTADVHFERKADALKAM 87 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 999999999998 8999999999999999999885
No 259
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.31 E-value=3.5e-12 Score=106.40 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=59.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|..||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 99 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF----GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAI 99 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS----CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHH
Confidence 4457899999999999999999999999 99999999999889999999999999999999885
No 260
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.5e-12 Score=107.03 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=55.9
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+++++++|+++|+.| |. ..|+|++++ +|+++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPL----NP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSC----CC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----Cc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 84 499999997 7999999999999999999986
No 261
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.5e-11 Score=102.35 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=67.3
Q ss_pred CCCCcCEEEEecCCCCC-----------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEE
Q 015821 221 EGKLLRTIFVGNLPLKV-----------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYI 289 (399)
Q Consensus 221 e~~~~rtVfVgNLP~~v-----------Tee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV 289 (399)
.+..+++|+|.||.... ++++|+++|++||.|.+|.| .+. .++|||||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--------------------~~~G~afV 69 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--------------------HPDGVASV 69 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--------------------CTTCEEEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--------------------CCCEEEEE
Confidence 44568999999994433 26899999999999999966 211 13599999
Q ss_pred eeCCHHHHHHHH-HccCceeeeeeeEEecCCCCc
Q 015821 290 VFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 290 ~F~s~e~A~~Al-~lng~~l~Gr~I~V~~a~~~~ 322 (399)
+|.+.++|..|+ .|||..|.|+.|.|.++.+..
T Consensus 70 ~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 70 SFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp ECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 999999999999 799999999999999997654
No 262
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.5e-12 Score=105.71 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=57.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCC-eEEEEEe-ecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS-VEAVRVI-RHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~-I~~VrI~-~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+.+++++|+++|..| |. |..|.|+ .+..+|.++|||||+|.+.++|..||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKV----TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHH----STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHH
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHh----cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHH
Confidence 356899999999999999999999999 88 9999998 78888999999999999999999885
No 263
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.30 E-value=1.7e-12 Score=110.95 Aligned_cols=62 Identities=19% Similarity=0.361 Sum_probs=57.5
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEE--EEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--VRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~--VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|.. |+|++|+.+|.++|||||+|.+. +|..||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~----G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai 83 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY----AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLL 83 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG----CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHH
Confidence 3467899999999999999999999999 99977 99999998999999999999999 998875
No 264
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.30 E-value=5.1e-12 Score=106.57 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=58.9
Q ss_pred ccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.....++|||+|||+.+++++|+++|+.| |.|..|+|+++. +|.++|||||+|.+.++|..||
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai 93 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAM 93 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTT----SCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHH
Confidence 34567899999999999999999999999 999999999998 8999999999999999999885
No 265
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.30 E-value=6.2e-12 Score=119.72 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=68.0
Q ss_pred CCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 222 ~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
....++|||+|||..+|+++|+++|+.||.|.+|+|.... +|||||+|.+.++|..|+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----------------------~g~afV~f~~~~~A~~A~ 261 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----------------------HDIAFVEFDNEVQAGAAR 261 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----------------------CcEEEEEeCCHHHHHHHH
Confidence 3457899999999999999999999999999999985321 389999999999999999
Q ss_pred -HccCceee-eeeeEEecCC
Q 015821 302 -AFNMAVIG-GNHIRLDRAC 319 (399)
Q Consensus 302 -~lng~~l~-Gr~I~V~~a~ 319 (399)
.|||..|. |+.|.|.++.
T Consensus 262 ~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 262 DALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHcCCcEeCCCCEEEEEEec
Confidence 59999999 9999999974
No 266
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=5e-12 Score=102.95 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=57.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|.|+++ +|.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPF----GTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTT----SCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999 99999999998 6999999999999999999885
No 267
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=100.60 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=52.7
Q ss_pred cceeecCCCCCC------CHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~------teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++|||+|||+.+ ++++|+++|++| |.|..|+|++ .+|.++|||||+|.+.++|..||
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai 64 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAV 64 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHH
Confidence 689999999999 679999999999 9999999883 57999999999999999999885
No 268
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=2.3e-12 Score=108.44 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=57.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCC---eEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~---I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+++++++|+++|+.| |. |..|+|+++.. |+++|||||+|.+.++|.+||
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al 78 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDC----TIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLAL 78 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTS----CBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHG
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHc----CCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 77 89999999987 999999999999999999986
No 269
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=105.72 Aligned_cols=62 Identities=37% Similarity=0.606 Sum_probs=55.8
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecC-CCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP-HMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~-~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+++++++|+++|+.| | |..|+|+++. .+|.++|||||+|.+.++|.+||
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS----C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 9 9999999998 58999999999999999999985
No 270
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3.2e-12 Score=106.26 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=52.0
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+++++++|+++|++| |.|..|+|+++ +|||||+|.+.++|..||
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f----G~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai 69 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKG------KNQAFIEMNTEEAANTMV 69 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH----CCEEEEEEETT------TTEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC------CCEEEEEECCHHHHHHHH
Confidence 456899999999999999999999999 99999999875 789999999999999885
No 271
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.29 E-value=2.3e-12 Score=101.45 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=56.2
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCC-CccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV-GKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~-~kG~AFV~F~s~e~A~~AL 399 (399)
.++|||+|||+++++++|+++|+.| |.|..|.|+++..++. ++|||||+|.+.++|.+||
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~ 64 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY----GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 64 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHH
Confidence 4799999999999999999999999 9999999999987666 9999999999999999885
No 272
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=110.47 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=55.4
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...+|||+|||+++|+++|+++|++|+.+.|.|..|+|+++. +|+++|||||+|.+.++|.+||
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al 85 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNAL 85 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHH
Confidence 458999999999999999999999993221234799999994 7999999999999999999985
No 273
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.29 E-value=6e-12 Score=100.12 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=56.3
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|++| |.|..|+|+++ +|.++|||||+|.+.++|..||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~ 65 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNEC----GHVLYADIKME--NGKSKGCGVVKFESPEVAERAC 65 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTT----SCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999999985 6899999999999999999885
No 274
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.29 E-value=3.5e-12 Score=107.68 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=59.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+.+|+.| |.|..|.|+.+..+|.++|||||+|.+.++|.+||
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 81 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 81 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999999999889999999999999999999885
No 275
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3.2e-12 Score=105.88 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=58.7
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeE--------EEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~--------~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|. .|+|+++..+|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 82 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQC----GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAV 82 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTT----SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999 8998 6999999889999999999999999999985
No 276
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.28 E-value=8e-12 Score=106.77 Aligned_cols=63 Identities=19% Similarity=0.358 Sum_probs=59.6
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.+||
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 122 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 122 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc----CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 99999999999989999999999999999999885
No 277
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.28 E-value=3.8e-12 Score=106.74 Aligned_cols=61 Identities=16% Similarity=0.363 Sum_probs=57.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+..++|||+|||+++++++|+++|+.| |.|..|.|+.+. +|.++|||||+|.+.++|..||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai 65 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKH----GPISEVLLIKDR-TSKSRGFAFITFENPADAKNAA 65 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTS----SCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999 999999999997 8999999999999999999885
No 278
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.28 E-value=3.9e-12 Score=109.17 Aligned_cols=63 Identities=22% Similarity=0.455 Sum_probs=59.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.+||
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 101 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY----GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAI 101 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH----SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 4456899999999999999999999999 99999999999989999999999999999999885
No 279
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.28 E-value=1.4e-12 Score=104.43 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=57.0
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+.+++++|+++|++| |.|..+.++.+..+|.++|||||+|.+.++|.+||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai 74 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 74 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTS----CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHH
Confidence 345899999999999999999999999 89999999999889999999999999999999885
No 280
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=7.5e-12 Score=103.76 Aligned_cols=62 Identities=15% Similarity=0.411 Sum_probs=58.0
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++. +|.++|||||+|.+.++|..||
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 83 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF----GQVISTRILRDS-SGTSRGVGFARMESTEKCEAVI 83 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 999999999998 8999999999999999999885
No 281
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=107.45 Aligned_cols=61 Identities=28% Similarity=0.422 Sum_probs=56.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCC---CCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM---RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~t---g~~kG~AFV~F~s~e~A~~AL 399 (399)
...++|||+|||+.+++++|+++|++| |.|. +.++.+..+ |.++|||||+|.+.++|.+||
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai 69 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRF----GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALI 69 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTT----CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999 8999 888888777 799999999999999999885
No 282
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.28 E-value=3.7e-12 Score=107.22 Aligned_cols=61 Identities=21% Similarity=0.406 Sum_probs=58.1
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|..||
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC----GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT----SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 46899999999999999999999999 99999999999889999999999999999999885
No 283
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=7.7e-12 Score=103.57 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=57.7
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+++. +|.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 73 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMA----GVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAI 73 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999 999999999997 5999999999999999999885
No 284
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4e-12 Score=106.08 Aligned_cols=61 Identities=23% Similarity=0.416 Sum_probs=55.8
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.....+|||+|||+++++++|+++|+.| .|..|+|+++.. |+++|||||+|.+.++|.+||
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-----~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al 73 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-----RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL 73 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-----CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-----CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999998 488999999976 999999999999999999986
No 285
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=106.39 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=57.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCC---eEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~---I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+++++++|+++|+.| |. |..|+|+++.. |.++|||||+|.+.++|..||
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al 72 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDC----RIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKAL 72 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTS----CBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhc----CCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999998 66 89999999987 999999999999999999985
No 286
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=5.8e-12 Score=106.96 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=53.3
Q ss_pred ccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...+.++|||+|||+++++++|+++|++| |.|..|+|+++ +|||||+|.+.++|.+||
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~f----G~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai 84 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKG------KNQAFIEMNTEEAANTMV 84 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTT----SCCCEEEEEGG------GTEEEEECSCHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeCC------CCEEEEEECCHHHHHHHH
Confidence 35567899999999999999999999999 99999999875 789999999999999885
No 287
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.27 E-value=5.7e-12 Score=113.65 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=67.7
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G-~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
..++|||+|||+.+|+++|+++|+.|| .|..|+|... ++|||||+|.+.++|..|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALI 176 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----------------------TSSCEEEECSSHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----------------------CCcEEEEEeCCHHHHHHHHH
Confidence 468999999999999999999999999 9999988321 2489999999999999999
Q ss_pred HccCceee-eeeeEEecCCC
Q 015821 302 AFNMAVIG-GNHIRLDRACP 320 (399)
Q Consensus 302 ~lng~~l~-Gr~I~V~~a~~ 320 (399)
.|||..|. |+.|.|.++.+
T Consensus 177 ~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 177 DLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHTSSCCSSCCSCCEEEECC
T ss_pred HhcCCccCCCCeEEEEeecc
Confidence 59999999 99999999865
No 288
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=2.9e-12 Score=103.28 Aligned_cols=63 Identities=25% Similarity=0.375 Sum_probs=58.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..+.++.+..+|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai 74 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 74 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTS----CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 88998888998889999999999999999999885
No 289
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.26 E-value=7.8e-12 Score=109.58 Aligned_cols=63 Identities=22% Similarity=0.417 Sum_probs=59.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+++..++.++|||||+|.+.++|.+||
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai 98 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKS----GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999 99999999999999999999999999999999985
No 290
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=3.2e-12 Score=108.06 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=56.7
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..+.++.+..+|.++|||||+|.+.++|..||
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al 84 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKL----DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 84 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSS----CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHH
Confidence 4456899999999999999999999999 88988666776678999999999999999999986
No 291
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=9.5e-12 Score=99.01 Aligned_cols=61 Identities=21% Similarity=0.367 Sum_probs=55.9
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+++++++|+++|+.| .|..|+|+++ .+|.++|||||+|.+.++|..||
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-----~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~ 67 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQAL 67 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-----CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHH
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-----CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999998 4889999999 67999999999999999999985
No 292
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.25 E-value=8.7e-12 Score=102.73 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=52.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++++|||+|||+.+++++|+++|++| |.|..|+|++ .+|||||+|.+.++|.+||
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~f----G~V~~v~i~~------~kg~AFVef~~~~~A~~Av 74 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEF----GPISYVVVMP------KKRQALVEFEDVLGACNAV 74 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEET------TTTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEEc------CCCEEEEEECCHHHHHHHH
Confidence 5578999999999999999999999999 9999999975 3789999999999999985
No 293
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.25 E-value=6.5e-12 Score=107.66 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=55.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeE--EEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--AVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~--~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...++|||+|||+++++++|+++|+.| + |. .|+|++|+. |+++|||||+|.+.++|.+||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~----~-i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al 101 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL----E-IVPNGITLPVDPE-GKITGEAFVQFASQELAEKAL 101 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS----C-EEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC----C-ceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHH
Confidence 456889999999999999999999999 4 55 899999987 999999999999999999985
No 294
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.1e-11 Score=100.85 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=55.7
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++.. .++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI----GPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAAL 72 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc----CCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHH
Confidence 4467999999999999999999999999 9999999999864 47999999999999999885
No 295
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.7e-11 Score=99.85 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=56.0
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++.. .++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNER--GSKGFGFVTFENSADADRAR 72 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT----SCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHH
Confidence 4467999999999999999999999999 9999999999864 48999999999999999885
No 296
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.1e-11 Score=102.02 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=52.3
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|++| |.|..|.|+++ +|||||+|.+.++|..||
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~v~~v~i~~~------kg~aFVef~~~~~A~~Ai 68 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF----GKVTNILMLKG------KNQAFLELATEEAAITMV 68 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEETT------TTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECC------CCEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999 99999998764 789999999999999885
No 297
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.24 E-value=9.5e-12 Score=99.57 Aligned_cols=56 Identities=27% Similarity=0.401 Sum_probs=50.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
.+..+|||+|||+++++++|+++|++| |.|..|+|+++ ++|||||+|.+.++|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~----G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQY----GEVVDVFIPKP-----FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCSS-----CCSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEeeC-----CCCEEEEEECCHHHHHHH
Confidence 456899999999999999999999999 99999999875 789999999999999864
No 298
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.24 E-value=1.9e-12 Score=102.75 Aligned_cols=58 Identities=26% Similarity=0.488 Sum_probs=55.2
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.+ |..||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~ 59 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF----GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAI 59 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH----TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHH
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc----CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHH
Confidence 589999999999999999999999 99999999999999999999999999999 88874
No 299
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.24 E-value=1.5e-11 Score=114.38 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=67.6
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G-~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al- 301 (399)
..++|||+|||+.+|+++|+++|+.|| .|..|++... ++|||||+|.+.++|..|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----------------------CCcEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999 9999988321 2489999999999999999
Q ss_pred HccCceee-eeeeEEecCCC
Q 015821 302 AFNMAVIG-GNHIRLDRACP 320 (399)
Q Consensus 302 ~lng~~l~-Gr~I~V~~a~~ 320 (399)
.|||..|. |+.|.|.++.+
T Consensus 208 ~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 208 DLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHTTCBSSSSCBCEEEECSS
T ss_pred HHCCCccCCCCeEEEEEecC
Confidence 59999999 99999999865
No 300
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=1.9e-11 Score=115.96 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=67.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
.++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..|+ .|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD------------------RGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET------------------TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC------------------CCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 5789999999999999999999999999999997653 2345699999999999999999 57
Q ss_pred c-Cceee---eeeeEEecCCCC
Q 015821 304 N-MAVIG---GNHIRLDRACPP 321 (399)
Q Consensus 304 n-g~~l~---Gr~I~V~~a~~~ 321 (399)
| +..+. |+.|.|.++.+.
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCE
T ss_pred cCCeEEecCCCceEEEeecccc
Confidence 4 44444 999999998754
No 301
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=1.9e-11 Score=101.02 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=52.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|++| |.|..|.|+++ +|||||+|.+.++|..||
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai 68 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKF----GTICYVMMMPF------KRQALVEFENIDSAKECV 68 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTT----SCEEEEEEETT------TTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECC------CCEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999999 99999998763 789999999999999885
No 302
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.22 E-value=9.1e-12 Score=116.87 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=57.1
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCC--CeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G--~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+.+++++|+++|+.| | .|..|+|++|..+|.++|||||+|.+.++|.+||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~----G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT----TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH----CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 45789999999999999999999999 8 8999999999999999999999999999999985
No 303
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=101.47 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=54.2
Q ss_pred cccceeecCCCCCC------CHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~------teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+.+ ++++|+.+|++| |.|..|.|++ .+|.++|||||+|.+.++|..||
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai 78 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAV 78 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG----SCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC----CCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHH
Confidence 46899999999999 789999999999 9999999983 57999999999999999999885
No 304
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.8e-11 Score=98.89 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=54.8
Q ss_pred cCcccceeecCCCCCCCHHHHH----HHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~----~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+ ++|++| |.|..|+|+++..+ +|||||+|.+.++|.+||
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai 69 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARH----GKVKSVELSPHTDY---QLKAVVQMENLQDAIGAV 69 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECSCCST---TCCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcccc----CcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999 999999 99999999999764 899999999999999985
No 305
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.1e-11 Score=100.33 Aligned_cols=60 Identities=22% Similarity=0.445 Sum_probs=54.5
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.+ +.++|||||+|.+.++|..||
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY----GAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEECCS---SSSSCCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHH
Confidence 4466899999999999999999999999 99999999665 568999999999999999985
No 306
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.21 E-value=3.3e-11 Score=99.75 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=66.8
Q ss_pred CcCEEEEecC--CCCCc--------HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCC
Q 015821 224 LLRTIFVGNL--PLKVK--------KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (399)
Q Consensus 224 ~~rtVfVgNL--P~~vT--------ee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s 293 (399)
.++.|.|.|+ |..+. +++|++.|++||.|.+|.|++++... .+.++|||||+|.+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~---------------~~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV---------------EVPGCGKIFVEFTS 68 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTB---------------CCTTTTEEEEEESS
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCC---------------CcCCcEEEEEEECC
Confidence 4788999998 44443 47999999999999999996654211 12356999999999
Q ss_pred HHHHHHHH-HccCceeeeeeeEEecCC
Q 015821 294 EQSTEAAL-AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 294 ~e~A~~Al-~lng~~l~Gr~I~V~~a~ 319 (399)
.++|.+|+ .|||..|.||.|.|.++.
T Consensus 69 ~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 69 VFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 99999999 799999999999999875
No 307
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.20 E-value=6.6e-12 Score=103.73 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=59.6
Q ss_pred EecCCCCCcHHHHHHHh------------cccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHH
Q 015821 230 VGNLPLKVKKKTLIKEF------------IKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (399)
Q Consensus 230 VgNLP~~vTee~L~~~F------------s~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A 297 (399)
+.|||+.+|+++|+++| ++||.|.+|.|+++. .+.++|||||.|.+.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~------------------~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL------------------GDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS------------------SSSSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC------------------CCCccEEEEEEECCHHHH
Confidence 56788888888777766 999999999996532 124579999999999999
Q ss_pred HHHH-HccCceeeeeeeEEecC
Q 015821 298 EAAL-AFNMAVIGGNHIRLDRA 318 (399)
Q Consensus 298 ~~Al-~lng~~l~Gr~I~V~~a 318 (399)
.+|+ .|||..|.||.|.|.++
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHCCCEECCEEEEEEEc
Confidence 9999 69999999999999875
No 308
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=8.8e-12 Score=102.97 Aligned_cols=57 Identities=9% Similarity=0.171 Sum_probs=52.0
Q ss_pred cCcccceeecCCCC-CCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~-~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.++.++|||+|||+ .+++++|+++|++| |.|..|+|+++ +|||||+|.+.++|..||
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai 69 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILNK------INEAFIEMATTEDAQAAV 69 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECSS------SSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEcC------CCEEEEEECCHHHHHHHH
Confidence 34678999999999 99999999999999 99999999865 479999999999999885
No 309
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.20 E-value=1.8e-11 Score=111.81 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=72.9
Q ss_pred CHHHHHHHHH-c--cCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEE
Q 015821 293 SEQSTEAALA-F--NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA 369 (399)
Q Consensus 293 s~e~A~~Al~-l--ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~ 369 (399)
+.+.+..|+. . ....+.+....|.+...................++|||+|||+++++++|+++|++| |.|..
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~ 138 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLN 138 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS----CCEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC----CCEEE
Confidence 4567777774 4 344555555555554211100000000011245899999999999999999999999 99999
Q ss_pred EEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 370 VRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 370 VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
|+|+++.. |.++|||||+|.+.++|..||
T Consensus 139 v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~ 167 (193)
T 2voo_A 139 IQMRRTLH-KAFKGSIFVVFDSIESAKKFV 167 (193)
T ss_dssp EEEEECTT-CCEEEEEEEEESSHHHHHHHH
T ss_pred EEEEECCC-CCcccEEEEEECCHHHHHHHH
Confidence 99999864 999999999999999999985
No 310
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.20 E-value=2.3e-11 Score=100.98 Aligned_cols=59 Identities=22% Similarity=0.563 Sum_probs=54.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+.+++++|+.+|+.| |.|..|.|+++ +.++|||||+|.+.++|.+||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~ 64 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKY----GPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAV 64 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEECS---TTTTTCEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHH
Confidence 456899999999999999999999999 99999999976 556999999999999999885
No 311
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.6e-11 Score=101.63 Aligned_cols=61 Identities=25% Similarity=0.436 Sum_probs=55.9
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||..+++++|+++|+.| |.|..|+|+++. +.++|||||+|.+.++|.+||
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNE--RGSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT----CCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc----CCEEEEEEEECC--CCCceEEEEEECCHHHHHHHH
Confidence 4467899999999999999999999999 999999999985 458999999999999999885
No 312
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.19 E-value=3.1e-11 Score=111.13 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=62.7
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcccCCe--eEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEI--DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~~G~I--~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
..++|||+|||+++|+++|+++|+.||.| .+|++..+. + .++|||||+|.+.++|..||
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~----~---------------~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK----S---------------ERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC----S---------------SSSEEEEEECSSHHHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC----C---------------CCceEEEEEeCCHHHHHHHH
Confidence 36889999999999999999999999999 888884321 1 23499999999999999999
Q ss_pred -HccCceeeee----eeEEec
Q 015821 302 -AFNMAVIGGN----HIRLDR 317 (399)
Q Consensus 302 -~lng~~l~Gr----~I~V~~ 317 (399)
.|||..|.|. ++.|.+
T Consensus 183 ~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 183 GFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp HHHTTCEECCSSSSSCEECEE
T ss_pred HHhCCCCccCCCCCcceEEEe
Confidence 6999999886 355544
No 313
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.4e-11 Score=97.46 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=51.4
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+++++++|+++|+.| |.|..|+|+++ ++|||||+|.+.++|++|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY----GDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT----SCCCEEECCSS-----CCSCCEEECSCHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEEecC-----CCCEEEEEECCHHHHHHHh
Confidence 46899999999999999999999999 99999999765 6899999999999998764
No 314
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=1.6e-11 Score=101.81 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=55.6
Q ss_pred cccceeecCCCCCCCHHHHH---HHhhccCCCCCCeEEEEEeecCCCC---CCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIY---QLFCGLNDLESSVEAVRVIRHPHMR---VGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~---~~Fs~f~~~~G~I~~VrI~~d~~tg---~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+.+++++|+ ++|++| |.|..|.|+++..++ .++|||||+|.+.++|.+||
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~----G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai 80 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKF----GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAI 80 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTT----SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhcc----CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHH
Confidence 46899999999999999999 999999 999999999987644 56699999999999999985
No 315
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=5.3e-11 Score=98.11 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=51.8
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+++++++|+++|+.| |.|..|.|+.+ |||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai 67 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-------GTGVVEFVRKEDMTYAV 67 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEETT-------TEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEecC-------CEEEEEECCHHHHHHHH
Confidence 4457899999999999999999999999 99999999876 79999999999999985
No 316
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=6.4e-11 Score=92.72 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=52.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|++| |.|..|+|+++ +|||||+|.+.++|..||
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~----G~i~~~~~~~~------kg~afV~f~~~~~A~~a~ 65 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF----GEIRTITVVQR------QQCAFIQFATRQAAEVAA 65 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT----SCEEEEEEEGG------GTEEEEEESSHHHHHHHH
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC----CCEeEEEEECC------CCEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999 99999999864 789999999999999885
No 317
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.16 E-value=1.3e-10 Score=98.44 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=68.0
Q ss_pred CcCEEEEecCCC--CC---cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 224 LLRTIFVGNLPL--KV---KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 224 ~~rtVfVgNLP~--~v---Tee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
.+++|+|.||-. ++ .+++|++.|++||.|.+|.|++++..... ++.++|||||.|.+.++|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~-------------~~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEE-------------DAEIIVKIFVEFSIASETH 85 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSST-------------TCEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCccc-------------CCcceEEEEEEECCHHHHH
Confidence 378999999932 22 47899999999999999999887532111 1235699999999999999
Q ss_pred HHH-HccCceeeeeeeEEecCC
Q 015821 299 AAL-AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~ 319 (399)
+|+ .|||..|.||.|.|.++.
T Consensus 86 ~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 86 KAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHCCCEECCcEEEEEEcC
Confidence 999 699999999999999975
No 318
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=3.5e-11 Score=97.58 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=52.9
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.| +|+.+ .+|.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~ 70 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA----TFI---KVPQN-QNGKSKGYAFIEFASFEDAKEAL 70 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC----SEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHH
Confidence 4467999999999999999999999999 866 66777 57999999999999999999885
No 319
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.77 E-value=3.4e-12 Score=106.46 Aligned_cols=62 Identities=21% Similarity=0.219 Sum_probs=58.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEE--------EEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--------VRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~--------VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+.+++++|+++|+.| |.|.. |+|++++.+|.++|||||+|.+.++|..||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 74 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAI 74 (116)
Confidence 356899999999999999999999999 89998 999999888999999999999999999986
No 320
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.15 E-value=4.4e-12 Score=102.96 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=55.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...++|||+|||+++++++|+++|+.| |.|.. .++.+..+|.++|||||+|.+.++|.+||
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~ 75 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL----FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL 75 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH----HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999 88887 67777778999999999999999999985
No 321
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=5e-11 Score=96.65 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=54.4
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| + .|.++++..++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS----V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAK 71 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC----S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC----e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 4567999999999999999999999987 3 6778888888999999999999999999885
No 322
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.5e-11 Score=101.98 Aligned_cols=63 Identities=16% Similarity=0.346 Sum_probs=51.7
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|.+..+..+|.++|||||+|.+.++|..||
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai 84 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARF----QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 84 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHH----HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCccceEEEEEcCCCccceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999 88843322222226899999999999999999885
No 323
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=8.8e-11 Score=93.28 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=50.6
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+++++++|+++|+.| |.|..|.|+ +|||||+|.+.++|..||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~--------~g~afV~f~~~~~A~~A~ 59 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQY----GKVLECDII--------KNYGFVHIEDKTAAEDAI 59 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTS----SCEEEEEEE--------TTEEEEEESSHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEE--------CCEEEEEECCHHHHHHHH
Confidence 3467999999999999999999999999 999999997 579999999999999885
No 324
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=2.8e-11 Score=101.66 Aligned_cols=57 Identities=18% Similarity=0.399 Sum_probs=51.8
Q ss_pred cCcccceeecCCCCC-CCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~-~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||++ +++++|+++|++| |.|..|+|++ ++|||||+|.+.++|..||
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f----G~V~~v~i~~------~kg~aFVef~~~~~A~~Ai 79 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY----GKIKNYILMR------MKSQAFIEMETREDAMAMV 79 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT----SCCSEEEEET------TTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc----CCEEEEEEec------CCCEEEEEECCHHHHHHHH
Confidence 446789999999998 9999999999999 9999999964 4789999999999999885
No 325
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=5.9e-11 Score=101.65 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=52.9
Q ss_pred cCcccceeecCCCCCCCHHHHH----HHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~----~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+ ++|++| |.|..|.+.+ +|.++|||||+|.+.++|..||
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~----G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai 89 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQ----GDILDIVVDL---SDDNSGKAYIVFATQESAQAFV 89 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECC---CCSSCCCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccC----CCeEEEEecc---CCCcCCEEEEEECCHHHHHHHH
Confidence 4457899999999999999876 799999 9999988854 4889999999999999999885
No 326
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=7.1e-11 Score=95.13 Aligned_cols=57 Identities=14% Similarity=0.267 Sum_probs=51.7
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+++ +|||||+|.+.++|..||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~~~~~------~g~afV~f~~~~~A~~A~ 70 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF----GSIRTIDHVKG------DSFAYIQYESLDAAQAAC 70 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT----SCEEEEEECSS------SCCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeCC------CCEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 99999998754 789999999999999885
No 327
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.13 E-value=2.4e-11 Score=97.61 Aligned_cols=60 Identities=22% Similarity=0.374 Sum_probs=54.0
Q ss_pred cCcccceeecCCCCCCCHHHHH----HHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~----~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+ ++|++| |.|..|.|++ +|.++|||||+|.+.++|..||
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~----G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~ 68 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRF----GQILDILVSR---SLKMRGQAFVIFKEVSSATNAL 68 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG----SCEEEEECCH---HHHHTTCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC----CCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHH
Confidence 4467999999999999999999 999999 9999999874 4788999999999999999885
No 328
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=5.4e-11 Score=96.45 Aligned_cols=54 Identities=24% Similarity=0.400 Sum_probs=50.8
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++|||+|||+.+++++|+++|+.| |.|..|.|+++ ++|||||+|.+.++|.+||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~ 54 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY----GPLRTVWIARN-----PPGFAFVEFEDPRDAEDAV 54 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH----CCCSEEEEESS-----SSSEEEEECSSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC-----CCCEEEEEECCHHHHHHHH
Confidence 479999999999999999999999 99999999887 7899999999999999885
No 329
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.11 E-value=7.3e-11 Score=94.95 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=50.8
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+..|||+||++.+|+++|+++|.+| |.|..+++.. ++|||||+|.+.++|..||
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~----G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai 60 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH----GPLVSFHPYL------NQGIALCKYTTREEANKAQ 60 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH----SCEEEEEEET------TTTEEEEEESSHHHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh----CCEEEEEEcC------CCcEEEEEECCHHHHHHHH
Confidence 46789999999999999999999999 9999999854 6899999999999999885
No 330
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.11 E-value=7.3e-11 Score=106.42 Aligned_cols=62 Identities=24% Similarity=0.370 Sum_probs=58.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.+. +|.++|||||+|.+.++|..||
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai 146 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAM 146 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHT----SCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHH
Confidence 3457899999999999999999999999 999999999998 8999999999999999999885
No 331
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.10 E-value=4.5e-11 Score=102.70 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=49.1
Q ss_pred cceeecCC----CCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecC
Q 015821 337 KTVFVGNL----PFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (399)
Q Consensus 337 ~tLfV~NL----p~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s 391 (399)
..|||+|| |+.+++.+|+++|+.| |.|..|.++.|+.||.++|||||+|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f----GeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY----GEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT----SCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCceeeEEEEEECC
Confidence 68999999 9999999999999999 999999999999999999999999996
No 332
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.10 E-value=8.7e-11 Score=96.91 Aligned_cols=73 Identities=25% Similarity=0.413 Sum_probs=58.1
Q ss_pred eeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCC-CCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEE
Q 015821 309 GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYV 387 (399)
Q Consensus 309 ~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~-~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV 387 (399)
.|..|.|..+.+... .......++|||+|||+. +++++|+++|+.| |.|..|.| ++|||||
T Consensus 6 ~g~~~~~~~s~~~~~------~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i--------~~g~afV 67 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK------NDPKSINSRVFIGNLNTALVKKSDVETIFSKY----GRVAGCSV--------HKGYAFV 67 (110)
T ss_dssp CSCCCCCCCCCSCCS------CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGG----SCCSEEEE--------ETTEEEE
T ss_pred CCcccccccCCCCCC------CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEE--------eCCEEEE
Confidence 456666666543221 111334589999999999 9999999999999 99999998 4789999
Q ss_pred EecCHHHHHhhC
Q 015821 388 LFKTRDEEWEII 399 (399)
Q Consensus 388 ~F~s~e~A~~AL 399 (399)
+|.+.++|..||
T Consensus 68 ~f~~~~~A~~A~ 79 (110)
T 1wf1_A 68 QYSNERHARAAV 79 (110)
T ss_dssp ECSSSHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 999999999885
No 333
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1e-10 Score=96.34 Aligned_cols=56 Identities=25% Similarity=0.428 Sum_probs=51.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...++|||+|||+.+++++|+.+|+.| |.|..|+|+++ +|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~------~g~afV~f~~~~~a~~A~ 78 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPF----GQIMEIRVFPE------KGYSFVRFSTHESAAHAI 78 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHH----SCEEEEEEETT------TTEEEEEESSHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeCC------CCEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999 99999999876 789999999999999885
No 334
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.4e-10 Score=93.99 Aligned_cols=55 Identities=18% Similarity=0.379 Sum_probs=50.6
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||..+++++|+.+|+.| |.|..|+|+ .++|||||+|.+.++|..||
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai 80 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF----GFILDFKHY------PEKGCCFIKYDTHEQAAVCI 80 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT----SCCSEEEEE------TTTTEEEEECSSHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC----CCEEEEEEe------cCCCEEEEEECCHHHHHHHH
Confidence 46899999999999999999999999 999999997 45889999999999999885
No 335
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.08 E-value=9.7e-11 Score=94.68 Aligned_cols=57 Identities=28% Similarity=0.481 Sum_probs=51.8
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++ +|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~~------kg~afV~f~~~~~a~~a~ 68 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKY----GKAGEVFIHKD------KGFGFIRLETRTLAEIAK 68 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTT----CCCSEEEEETT------TTEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhc----CCeEEEEEecC------CCEEEEEECCHHHHHHHH
Confidence 4466899999999999999999999999 99999999754 789999999999999885
No 336
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.07 E-value=9.2e-11 Score=98.01 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=49.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...++|||+|||+++++++|+++|+.| |.|..|.|+.+ |||||+|.+.++|..||
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai 68 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-------GTGVVEFVRKEDMTYAV 68 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGG----SCEEEEEECTT-------SEEEEEESSHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEecC-------CEEEEEECCHHHHHHHH
Confidence 346899999999999999999999999 99999999766 89999999999999986
No 337
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.07 E-value=7.6e-11 Score=98.69 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=51.5
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCC-CeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G-~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+++++++|+++|+.| | .|..|.|+.+ .++|||||+|.+.++|..||
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~----G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai 84 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN----SLETTFSSVNTR----DFDGTGALEFPSEEILVEAL 84 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH----TCCCSEEECSSC----SSSCCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHH
Confidence 45899999999999999999999999 8 8999988543 47999999999999999985
No 338
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.06 E-value=9.5e-11 Score=97.41 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=50.4
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+.+++++|+++|++| |.|..|.|++ ++|||||+|.+.++|..||
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai 63 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF----GSLGRVLLPE------GGITAIVEFLEPLEARKAF 63 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCS------SSSCEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeC------CCCEEEEEeCCHHHHHHHH
Confidence 45899999999999999999999999 9999998864 5789999999999999885
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.06 E-value=1.1e-10 Score=91.62 Aligned_cols=60 Identities=27% Similarity=0.542 Sum_probs=51.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCC-------CeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-------SVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G-------~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+.+++++|+++|++|+...| .|..|++.++ +|||||+|.+.++|.+||
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH
Confidence 35689999999999999999999999822224 7999988654 789999999999999986
No 340
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=3.4e-10 Score=90.71 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=49.8
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+++++++|+.+|+.| |.|..| +.+..+|. ||||+|.+.++|.+||
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai 62 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF----GPVASV--VMDKDKGV---FAIVEMGDVGAREAVL 62 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT----SCEEEE--EECSSSCC---EEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEE--EEcCCCCc---EEEEEECCHHHHHHHH
Confidence 45799999999999999999999999 999987 56655555 9999999999999885
No 341
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.06 E-value=2.5e-10 Score=92.51 Aligned_cols=55 Identities=20% Similarity=0.581 Sum_probs=50.5
Q ss_pred cCcccceeecCCCC-CCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~-~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+ .+++++|+++|+.| |.|..|+|. +|||||+|.+.++|..||
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i~--------~g~afV~f~~~~~A~~Ai 74 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------NAFGFIQFDNPQSVRDAI 74 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEEC--------SSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------CCEEEEEECCHHHHHHHH
Confidence 45679999999998 99999999999999 999999982 789999999999999885
No 342
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=2.3e-10 Score=91.20 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=50.1
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|+.| |.|..|.|++ +||||+|.+.++|.+||
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~v~~~~--------~~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY----GPVIECDIVK--------DYAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT----SCCCEEEECS--------SEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEC--------CEEEEEECCHHHHHHHH
Confidence 4467999999999999999999999999 9999999963 39999999999999885
No 343
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.06 E-value=2.2e-10 Score=93.31 Aligned_cols=55 Identities=27% Similarity=0.430 Sum_probs=50.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+ +|||||+|.+.++|.+||
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~~~--------~~~afV~f~~~~~a~~A~ 62 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF----GKLERVKKL--------KDYAFIHFDERDGAVKAM 62 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH----SCEEEEEEC--------SSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEE--------CCEEEEEeCCHHHHHHHH
Confidence 4467899999999999999999999999 999999986 459999999999999885
No 344
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.7e-10 Score=92.88 Aligned_cols=55 Identities=20% Similarity=0.550 Sum_probs=49.5
Q ss_pred cCcccceeecCCCC-CCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~-~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+ .+++++|+.+|+.| |.|..|.|. +|||||+|.+.++|..||
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~--------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEE--------TTEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------CCEEEEEECCHHHHHHHH
Confidence 45679999999998 99999999999999 999999984 689999999999999885
No 345
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.7e-10 Score=93.04 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=50.9
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+.+|+.| |.|. +.++.+ .++|||||+|.+.++|..||
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~ 73 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALREL----GSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAV 73 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHT----TCCC-SEEEEE----TTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhc----CCEE-EEEEcC----CCCcEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 8886 677654 67899999999999999885
No 346
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.05 E-value=7.7e-11 Score=94.51 Aligned_cols=58 Identities=24% Similarity=0.449 Sum_probs=51.2
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.| |.|..+ ..+|.++|||||+|.+.++|..||
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~ 70 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNL 70 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCE-----EETTEEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEe-----CCCCCcceEEEEEECCHHHHHHHH
Confidence 4467899999999999999999999999 877665 245899999999999999999885
No 347
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-09 Score=89.86 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=60.2
Q ss_pred cCEEEEecCC-------CCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHH
Q 015821 225 LRTIFVGNLP-------LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (399)
Q Consensus 225 ~rtVfVgNLP-------~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A 297 (399)
.+.|.|.-.+ ..+|+++|+.+|++||.|..|+|+. .++|||||+|.+.++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A 67 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAA 67 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHH
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHH
Confidence 4556666544 4589999999999999999999841 2469999999999999
Q ss_pred HHHHHccCceeeeeeeEEecCCCCc
Q 015821 298 EAALAFNMAVIGGNHIRLDRACPPR 322 (399)
Q Consensus 298 ~~Al~lng~~l~Gr~I~V~~a~~~~ 322 (399)
..|+.. +..+.|+.|.|.++.++.
T Consensus 68 ~~Ai~~-~~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 68 ELAVQN-EVGLVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHT-CCBCSSSBCEEECSSCCC
T ss_pred HHHHHh-cCCCCCCeEEEEEccCCC
Confidence 999953 334679999999987543
No 348
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=5.1e-10 Score=90.41 Aligned_cols=57 Identities=28% Similarity=0.453 Sum_probs=50.6
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+++|+.|+. |.|..|.++ +|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~--------~g~afV~f~~~~~A~~A~ 68 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKI--------RDYAFVHFSNREDAVEAM 68 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEEC--------SSEEEEEESSHHHHHHHH
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEe--------CCeEEEEeCCHHHHHHHH
Confidence 456789999999999999999999999965 789988774 569999999999999885
No 349
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.04 E-value=2.3e-10 Score=94.68 Aligned_cols=55 Identities=24% Similarity=0.515 Sum_probs=50.8
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+.+|++| |.|..|.|+ +|||||+|.+.++|..||
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~--------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPF----GPMKEVKIL--------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTT----SCCCEEEEE--------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEE--------CCEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999 999999997 789999999999999885
No 350
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.6e-10 Score=97.31 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=50.7
Q ss_pred cCcccceee--cCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFV--GNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV--~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++++||| +||++++++++|+++|++| |.|..|.|+. .+|||||+|.+.++|.+||
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHH----SCEEEEECCT------TCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC------CCCEEEEEECCHHHHHHHH
Confidence 346789999 7799999999999999999 9999998853 3789999999999999885
No 351
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=3.8e-10 Score=89.56 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=49.9
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+++|++| |.|..|+|++ +||||+|.+.++|..||
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~~~--------~~afV~f~~~~~a~~A~ 60 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERR----GRVIECDVVK--------DYAFVHMEKEADAKAAI 60 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHH----SCEEEEEECS--------SCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcC----CCEEEEEEEC--------CEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 9999999973 39999999999999885
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.99 E-value=2.3e-10 Score=98.66 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=51.7
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEE--------EEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV--------RVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~V--------rI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.++|||+|||+.+++++|+.+|+.| |.|..| ++. .+|.++|||||+|.+.++|.+||
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai 109 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRY----VDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKAL 109 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGG----CCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHH
Confidence 3456899999999999999999999999 877663 333 35899999999999999999985
No 353
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=2.3e-10 Score=91.29 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=47.9
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCC-eEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS-VEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~-I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|||+++++++|+++|++| |. |..+.+. ++|||||+|.+.++|..||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~ 61 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDR----KLPLAGQVLL-------KSGYAFVDYPDQNWAIRAI 61 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHT----TCCCSSCEEE-------ETTEEEECCSCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCceEEEEEc-------CCCEEEEEECCHHHHHHHH
Confidence 456899999999999999999999999 88 5655552 4789999999999999885
No 354
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.97 E-value=1.1e-09 Score=108.66 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=62.6
Q ss_pred CCCcCEEEEec--CCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 222 GKLLRTIFVGN--LPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 222 ~~~~rtVfVgN--LP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
....++|||+| |++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~ 71 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKR 71 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHH
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHH
Confidence 45578999999 578999999999999999999887621 25899999999999999
Q ss_pred HH-HccCceee---ee--eeEEecCC
Q 015821 300 AL-AFNMAVIG---GN--HIRLDRAC 319 (399)
Q Consensus 300 Al-~lng~~l~---Gr--~I~V~~a~ 319 (399)
|+ .|||..+. |+ .|.|.++.
T Consensus 72 Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 72 AYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HHHHhCCCccccccCCceEEEEEEee
Confidence 99 69999883 44 56777663
No 355
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=5.2e-10 Score=89.59 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=51.7
Q ss_pred cCcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEE-EeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR-VIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~Vr-I~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||+.+++++|+.+|+.| |.|..|+ |+.++.+| .|||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai 71 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQY----GVVESCEQVNTDSETA----VVNVTYSSKDQARQAL 71 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHH----SCEEEEEEECCSSSSE----EEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCC----EEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 9999995 88876544 3999999999999885
No 356
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.92 E-value=2.6e-09 Score=89.74 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=63.0
Q ss_pred CCcCEEEEecCCC--CC--------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeC
Q 015821 223 KLLRTIFVGNLPL--KV--------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (399)
Q Consensus 223 ~~~rtVfVgNLP~--~v--------Tee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~ 292 (399)
..++.|.|.|+=. +. .+++|++.|++||.|.+|.|.+.. .+|||||.|.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---------------------~~G~~fV~f~ 63 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---------------------AQGNVYVKCP 63 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---------------------TTCCEEEECS
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---------------------CcEEEEEEEC
Confidence 4578899999832 21 246899999999999999883321 2599999999
Q ss_pred CHHHHHHHH-HccCceeeeeeeEEecCC
Q 015821 293 SEQSTEAAL-AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 293 s~e~A~~Al-~lng~~l~Gr~I~V~~a~ 319 (399)
+.++|.+|+ .|||..|.||.|.|.++.
T Consensus 64 ~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 64 SIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 999999999 699999999999999985
No 357
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.92 E-value=7.8e-10 Score=87.57 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=48.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++|||+|||+.+++++|+++|++| .|..|+|. .++|||||+|.+.++|..||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----~v~~~~i~------~~~g~afV~f~~~~~a~~Ai 57 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-----DLKYCYVD------RNKRTAFVTLLNGEQAQNAI 57 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-----CCCCEEEE------GGGTEEEECCSCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-----CeEEEEEe------CCCcEEEEEECCHHHHHHHH
Confidence 45899999999999999999999998 37788874 57899999999999999885
No 358
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.89 E-value=2.2e-09 Score=95.90 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=51.0
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...+|||+||++.+++++|+++|+.| |.|..|.|+.+ .++|||||+|.+.++|..||
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~f----G~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai 101 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTK----NNQFQALLQYADPVSAQHAK 101 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHH----SCEEEEEEEES----SSCEEEEEEESCHHHHHHHH
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhc----CCEEEEEEEeC----CCCCEEEEEECCHHHHHHHH
Confidence 34679999999999999999999999 99999999754 25789999999999999885
No 359
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.5e-09 Score=86.04 Aligned_cols=54 Identities=11% Similarity=0.176 Sum_probs=48.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|| .+++++|+++|+.| |.|..|.|. .++|||||+|.+.++|.+||
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~----G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai 66 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD------PPRNCAFVTYEKMESADQAV 66 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTT----SCEEEEEEE------TTTTEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhC----CCEEEEEec------CCCCEEEEEECCHHHHHHHH
Confidence 45689999996 89999999999999 999999983 56889999999999999985
No 360
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.86 E-value=3.4e-09 Score=91.23 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=49.9
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccE-EEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~-AFV~F~s~e~A~~AL 399 (399)
....|||+||++.+|+++|+++|++| |.|..|+|+.+ .+|| |||+|.+.++|..||
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~y----G~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai 83 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTK-----NNQFQALLQYADPVSAQHAK 83 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTS----SCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHH
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCc----CCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHH
Confidence 34678899999999999999999999 99999998865 2577 999999999999985
No 361
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.85 E-value=5.2e-09 Score=86.48 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=53.5
Q ss_pred CcccceeecCCCC-----CCCHHHHHHHhhccCCCCCCeEEEEEeecCCC-CCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPF-----DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM-RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~-----~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~t-g~~kG~AFV~F~s~e~A~~AL 399 (399)
.++++|+|+||.. +-++++|+++|++| |.|..|.|++++.+ +.++|||||+|.+.++|.+|+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~----G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai 73 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY----GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAV 73 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG----SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc----CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHH
Confidence 4678999999962 23789999999999 99999999998754 689999999999999999885
No 362
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=4e-09 Score=85.80 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=44.7
Q ss_pred Ccccc-eeecCCCCCCCHHH----HHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKT-VFVGNLPFDVKDEE----IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~t-LfV~NLp~~~teed----L~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+++.+ |||+|||+.+++++ |+++|++|| |.|..| +| |+|||.|.+.++|.+||
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG---G~Vl~V-------tg---G~AfV~F~~~esA~~A~ 63 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG---GKVLSI-------TG---CSAILRFINQDSAERAQ 63 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT---CCEEEC-------CT---TCEEEEESSHHHHHHHH
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC---CeeEEE-------ec---CEEEEEECCHHHHHHHH
Confidence 34555 99999999999887 668999992 389988 34 99999999999999985
No 363
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.81 E-value=8e-09 Score=88.15 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=47.1
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccE-EEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~-AFV~F~s~e~A~~AL 399 (399)
..|||+||++.+++++|+++|++| |.|..|.|+.. .|| |||+|.+.++|..||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y----G~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~ 79 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV----GKVQRIVIFKR------NGIQAMVEFESVLCAQKAK 79 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT----SCEEEEEEEES------SSEEEEEEESSHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc----CCEEEEEEEeC------CCCEEEEEECCHHHHHHHH
Confidence 446899999999999999999999 99999999653 276 999999999999885
No 364
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.75 E-value=7.3e-09 Score=87.49 Aligned_cols=54 Identities=11% Similarity=0.176 Sum_probs=48.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.+.++|||+|| ++++++|+++|+.| |.|..|.|. .++|||||+|.+.++|..||
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~----G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai 90 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD------PPRNCAFVTYEKMESADQAV 90 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT----CCCSCEEEE------TTTTEEEEECSSHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc----CCEEEEEEe------CCCCEEEEEECCHHHHHHHH
Confidence 45789999996 69999999999999 999999985 56899999999999999885
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.72 E-value=8.6e-09 Score=97.48 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=51.7
Q ss_pred cCcccceeecCCCCCC---------CHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDV---------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~---------teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++|||+|||..+ ++++|+.+|++| |.|..|+|+. ++|||||+|.+.++|+.||
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~ 196 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRIRYVE------SKNCGFVKFKYQANAEFAK 196 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEEEEEG------GGTEEEEEESSHHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEEEEEC------CCCEEEEEeCCHHHHHHHH
Confidence 4467899999999998 799999999999 9999999985 4789999999999999885
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.65 E-value=1.7e-08 Score=100.26 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=50.8
Q ss_pred cCcccceeecC--CCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGN--LPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~N--Lp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++.+|||+| |++.+++++|+++|++| |.|..|.|++ ++|||||+|.+.++|.+||
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai 73 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP------NKPYSFARYRTTEESKRAY 73 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT----SCEEEEECCT------TCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC------CCCEEEEEECCHHHHHHHH
Confidence 45779999999 57899999999999999 9999987753 4799999999999999985
No 367
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=8e-08 Score=81.60 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=61.6
Q ss_pred CcCEEEEecCCCC-CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCC-HHHHHHHH
Q 015821 224 LLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS-EQSTEAAL 301 (399)
Q Consensus 224 ~~rtVfVgNLP~~-vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s-~e~A~~Al 301 (399)
..+.|||+||++. ++.++|+++|+.||.|..|.+..+. -.|||.|.+ ..+|..|+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----------------------~tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----------------------KEGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----------------------SEEEEEESSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----------------------CEEEEEECCChHHHHHHH
Confidence 3588999999999 9999999999999999999884432 369999999 88898888
Q ss_pred -Hc--cCceeeeeeeEEecCC
Q 015821 302 -AF--NMAVIGGNHIRLDRAC 319 (399)
Q Consensus 302 -~l--ng~~l~Gr~I~V~~a~ 319 (399)
.+ ++..|.|..+.+....
T Consensus 74 ~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 74 KDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHTTTSCBCTTSSSEEEEECC
T ss_pred HHhhcCCcEEeCcEEEEEECC
Confidence 56 4778888888887653
No 368
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=8.7e-08 Score=77.18 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=60.8
Q ss_pred CcCEEEEecCCC----CCcH----HHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHH
Q 015821 224 LLRTIFVGNLPL----KVKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (399)
Q Consensus 224 ~~rtVfVgNLP~----~vTe----e~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e 295 (399)
...||+|.-+|. .+-. .+|...|++||.|..+++.. +.+||+|.+.+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-------------------------d~~fVtF~d~~ 60 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-------------------------DKMWVTFLEGS 60 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-------------------------SSEEEEESSHH
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-------------------------CCEEEEECChH
Confidence 356888888773 3334 67899999999999999833 35899999999
Q ss_pred HHHHHHHccCceeeeeeeEEecCCC
Q 015821 296 STEAALAFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 296 ~A~~Al~lng~~l~Gr~I~V~~a~~ 320 (399)
+|.+|+.|||..+.||.|+|..+.+
T Consensus 61 sAlaAi~mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 61 SALNVLSLNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHGGGGTTCEETTEEEEEEECCC
T ss_pred HHHHHHhcCCeEeCCeEEEEEeCCC
Confidence 9999999999999999999999864
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=1.5e-07 Score=77.10 Aligned_cols=45 Identities=16% Similarity=0.075 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 346 ~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+++++|+++|++| |.|..|+|+ +.++|||||+|.+.++|..||
T Consensus 27 ~~~te~~L~~~F~~~----G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai 71 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY----GEVLNLVLS-----SKKPGTAVVEFATVKAAELAV 71 (100)
T ss_dssp CSCCHHHHHHHHHTT----SCEEEEEEE-----SSSSSEEEEEESCHHHHHHHH
T ss_pred CCCCHHHHHHHHHhc----CCEEEEEEc-----cCCCCEEEEEECCHHHHHHHH
Confidence 568999999999999 999999997 468999999999999999885
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.58 E-value=4.8e-08 Score=80.57 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=51.8
Q ss_pred cccceeecCC--CCCCC--------HHHHHHHhhccCCCCCCeEEEEEeecCCC--CCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNL--PFDVK--------DEEIYQLFCGLNDLESSVEAVRVIRHPHM--RVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NL--p~~~t--------eedL~~~Fs~f~~~~G~I~~VrI~~d~~t--g~~kG~AFV~F~s~e~A~~AL 399 (399)
++++|+|.|+ |..+. .++|++.|++| |.|..|.|+++..+ +.++|||||+|.+.++|.+||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai 76 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAM 76 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHH
Confidence 5789999998 44443 36999999999 99999999998754 468999999999999999985
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.52 E-value=7.8e-08 Score=81.15 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=51.5
Q ss_pred cccceeecCCC--CCC---CHHHHHHHhhccCCCCCCeEEEEEeecCC----CCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLP--FDV---KDEEIYQLFCGLNDLESSVEAVRVIRHPH----MRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp--~~~---teedL~~~Fs~f~~~~G~I~~VrI~~d~~----tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++++|+|.|+- .++ -+++|++.|++| |.|..|.|+++.. ++.++|||||+|.+.++|.+||
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~----G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai 88 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAI 88 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT----SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc----CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHH
Confidence 57899999983 222 368999999999 9999999999864 4678899999999999999985
No 372
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.2e-07 Score=78.41 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=48.5
Q ss_pred cCcccceeecCCCCCCC-----------HHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFDVK-----------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~~t-----------eedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++++|+|+||..... +++|+++|++| |.|..|.| .+. .++|||||+|.+.++|.+||
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~----G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF----GQIRKLLL-FDR---HPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT----SCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHH
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc----CCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHH
Confidence 34679999999944332 57999999999 99999965 553 38999999999999999885
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.48 E-value=2.9e-08 Score=81.71 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=46.7
Q ss_pred ecCCCCCCCHHHHHHHh------------hccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 341 VGNLPFDVKDEEIYQLF------------CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 341 V~NLp~~~teedL~~~F------------s~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
+.|||+.+++++|+++| ++| |.|..|.|+++.. |+++|||||+|.+.++|.+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~----G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~ 85 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY----GEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAV 85 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC----CceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHH
Confidence 56788888888777666 999 9999999999865 899999999999999999885
No 374
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.41 E-value=4.8e-07 Score=83.29 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=58.8
Q ss_pred CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-HccCceeeeeeeEE
Q 015821 237 VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRL 315 (399)
Q Consensus 237 vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V 315 (399)
-.+++|...|++||.|.+|.|++....+. .++.++|++||+|.+.++|.+|+ .|||..|.||.|.|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~-------------~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEE-------------EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSS-------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcc-------------cCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 35789999999999999999976542211 13456799999999999999999 69999999999999
Q ss_pred ecCC
Q 015821 316 DRAC 319 (399)
Q Consensus 316 ~~a~ 319 (399)
.++.
T Consensus 208 ~~~~ 211 (222)
T 3dxb_A 208 EVYD 211 (222)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9975
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=5.9e-07 Score=72.75 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=60.2
Q ss_pred CCcCEEEEecCCCC-----CcH----HHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCC
Q 015821 223 KLLRTIFVGNLPLK-----VKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (399)
Q Consensus 223 ~~~rtVfVgNLP~~-----vTe----e~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s 293 (399)
....||+|.-++.. +-. .+|...|+.||.|..|++..+ -+||+|.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------------------------~~fVtF~d 67 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------------------------QMLVTFAD 67 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------------------------EEEEECSC
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------------------------cEEEEEcC
Confidence 34578999988743 333 568899999999999998442 39999999
Q ss_pred HHHHHHHHHccCceeeeeeeEEecCC
Q 015821 294 EQSTEAALAFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 294 ~e~A~~Al~lng~~l~Gr~I~V~~a~ 319 (399)
.++|.+||.|||..+.||.|+|..-.
T Consensus 68 ~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 68 SHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp SHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred hHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 99999999999999999999998754
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=6.7e-07 Score=75.90 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=50.5
Q ss_pred cCcccceeecCCCCC-CCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecC-HHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT-RDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~-~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s-~e~A~~AL 399 (399)
....+.|||+||+.. ++.++|+++|+.| |.|.+|.|.++.. .|||.|.+ ..+|..||
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~----G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNH----GEIKWIDFVRGAK------EGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSS----CCEEEEECCTTCS------EEEEEESSCHHHHHHHH
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCC------EEEEEECCChHHHHHHH
Confidence 456789999999999 9999999999999 9999999988864 59999999 77877664
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.8e-05 Score=65.64 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=63.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhccc-----CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKF-----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~-----G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
.++|-|-|||-.+++..|+.+...+ |.|..|.++.+. |-|+|+|.+...|-+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----------------------~GAivef~d~~~AgK 77 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----------------------NGAIIIFRDSKFAAK 77 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----------------------TEEEEECSCHHHHHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----------------------CceEEEEccchhhHH
Confidence 5889999999999999999999999 999999885433 569999999999998
Q ss_pred HH-HccCceeeeeeeEEecC
Q 015821 300 AL-AFNMAVIGGNHIRLDRA 318 (399)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a 318 (399)
|. .|+|..|.|+.|+|...
T Consensus 78 asLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 78 MLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHHHSSEEETTEEEEEECH
T ss_pred HHhhcCCeeecCeEEEecCH
Confidence 86 99999999999999765
No 378
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.92 E-value=9.7e-06 Score=67.81 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=46.0
Q ss_pred cccceeecCCC--CCC--------CHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLP--FDV--------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp--~~~--------teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++++|.|.|+= ... .+++|++.|++| |.|..|.|+++. ++|||||+|.+.++|.+||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf----G~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai 72 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH----GGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAV 72 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT----TCCSEEEECTTC----TTCCEEEECSSHHHHHHHH
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc----CCEEEEEEecCC----CcEEEEEEECCHHHHHHHH
Confidence 56789999872 221 145889999999 999999997663 5899999999999999885
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=0.00011 Score=60.21 Aligned_cols=88 Identities=20% Similarity=0.190 Sum_probs=72.8
Q ss_pred CcCEEEEecCCCCCcHHHHHHHhcc-----cCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHH
Q 015821 224 LLRTIFVGNLPLKVKKKTLIKEFIK-----FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (399)
Q Consensus 224 ~~rtVfVgNLP~~vTee~L~~~Fs~-----~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~ 298 (399)
...+|.|.|||..+.++.|.-+|.. =|+|.+|.. .+ +-|+|+|.+...|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~-----------------------~~AvItF~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG-----------------------CGGVLTFREPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET-----------------------TEEEEEESSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC-----------------------CcEEEEEcChHHHH
Confidence 3578999999999999999999996 267887765 21 36999999999999
Q ss_pred HHHHccCceeeeeeeEEecCCCCccCCCCCCCCccCcccceeecCCCCCCC
Q 015821 299 AALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVK 349 (399)
Q Consensus 299 ~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~t 349 (399)
..|+...+.|.|..|.|....+. ...+|++.|||+.++
T Consensus 62 rVL~k~~H~L~~~~LsV~P~~~~-------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 62 RVLAQADHELHGAQLSLRPAPPR-------------APARLLLQGLPPGTS 99 (104)
T ss_dssp HHHTCSCCBSSSSBCEEEECCCC-------------CCCCCCCCSCCCCCC
T ss_pred HHhcCCcceecCeEEEEEcCCCC-------------CcceEeeecCCCCCC
Confidence 99988788899999999776432 347899999998875
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=0.0002 Score=57.49 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=44.1
Q ss_pred CcccceeecCCC----CCCCH----HHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 334 DIKKTVFVGNLP----FDVKD----EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 334 ~~~~tLfV~NLp----~~~te----edL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
++..||+|..++ .++-. .+|.+.|++| |.|..++|+.+. +||+|.+.++|.+||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi 66 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF----GEVILIRFVEDK--------MWVTFLEGSSALNVL 66 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT----CCEEEEEECSSS--------EEEEESSHHHHHHGG
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC----CCeEEEEEecCC--------EEEEECChHHHHHHH
Confidence 456788888776 23434 6788999999 999999998873 899999999999986
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.11 E-value=0.00041 Score=63.42 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=41.6
Q ss_pred CCHHHHHHHhhccCCCCCCeEEEEEeecC----CCCCCccEEEEEecCHHHHHhhC
Q 015821 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHP----HMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 348 ~teedL~~~Fs~f~~~~G~I~~VrI~~d~----~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
-.+++|.+.|+.| |.|..|.|+++. .+++++|++||+|.+.++|.+||
T Consensus 141 e~~~dl~~e~~~~----G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~ 192 (222)
T 3dxb_A 141 DLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAI 192 (222)
T ss_dssp THHHHHHHHHTTT----SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHcc----CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHH
Confidence 3568999999999 999999999654 34589999999999999999885
No 382
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.02 E-value=0.0021 Score=52.16 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=47.4
Q ss_pred CCcCCCCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHH
Q 015821 218 FDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (399)
Q Consensus 218 ~~~e~~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A 297 (399)
.+-.+...+.++| ++|..+.-.||..+|+.||.|. |+++.+ ..|||.|.+++.|
T Consensus 9 ~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD------------------------TsAlvvf~~~~~a 62 (100)
T 1whv_A 9 PDLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD------------------------TSAFVSLSQPEQV 62 (100)
T ss_dssp SCCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET------------------------TEEEEECSCHHHH
T ss_pred CCCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC------------------------CeEEEEecCHHHH
Confidence 3344455677777 9999999999999999999654 666443 3799999999999
Q ss_pred HHHHH
Q 015821 298 EAALA 302 (399)
Q Consensus 298 ~~Al~ 302 (399)
..||.
T Consensus 63 ~~al~ 67 (100)
T 1whv_A 63 QIAVN 67 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=0.00031 Score=56.76 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=45.4
Q ss_pred cCcccceeecCCCCC-----CCH----HHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 333 YDIKKTVFVGNLPFD-----VKD----EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 333 ~~~~~tLfV~NLp~~-----~te----edL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
.++..||+|..++.. +-. .+|.+.|.+| |.|..++|+.|. +||+|.+.++|.+||
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vilvr~v~d~--------~fVtF~d~~sAl~AI 75 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY----GTIVLVRINQGQ--------MLVTFADSHSALSVL 75 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH----SCCSEEEEETTE--------EEEECSCSHHHHHHH
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC----CCEEEEEEecCc--------EEEEEcChHHHHHHH
Confidence 456789999988743 333 5688999999 999999999884 999999999999986
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.85 E-value=0.0048 Score=50.60 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=59.8
Q ss_pred cCEEEEecCCCCC-c----HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHH
Q 015821 225 LRTIFVGNLPLKV-K----KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (399)
Q Consensus 225 ~rtVfVgNLP~~v-T----ee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~ 299 (399)
..+|+|.||+..+ + .+.+..+|..|+++....+.. . -.-..|.|.++++|.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk----S-------------------FRRirv~F~~~~~A~~ 61 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK----S-------------------FKRVRINFSNPLSAAD 61 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET----T-------------------TTEEEEECSSTTHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC----c-------------------ceEEEEEeCChHHHHH
Confidence 5789999999876 2 367899999999988765522 1 1247899999999999
Q ss_pred HH-HccCceeeeeeeEEecCCC
Q 015821 300 AL-AFNMAVIGGNHIRLDRACP 320 (399)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a~~ 320 (399)
|- .||+..|.|+.|+|.++.+
T Consensus 62 AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 62 ARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHTSTTSEETTEECEEECCCC
T ss_pred HHHHhccceecCceeEEEecCC
Confidence 96 8999999999999999874
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.68 E-value=0.0059 Score=51.29 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=58.4
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...+.|-|-+.|+.. ...|..+|++||.|.+.... . ...+-.|.|.+..+|++||.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~-----------------~~NWihI~Y~s~~~A~rAL~ 77 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------N-----------------TGNWMHIRYQSKLQARKALS 77 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------S-----------------SSSEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------C-----------------CCCeEEEEeCCHHHHHHHHH
Confidence 346789999999986 56777899999999877651 0 12489999999999999999
Q ss_pred ccCceeee-eeeEEecCC
Q 015821 303 FNMAVIGG-NHIRLDRAC 319 (399)
Q Consensus 303 lng~~l~G-r~I~V~~a~ 319 (399)
.||..|.| -.|-|.+..
T Consensus 78 kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 78 KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp TTTCEETTTEECEEEECC
T ss_pred hCCeEecCCEEEEEEECC
Confidence 99999975 667777754
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.57 E-value=0.011 Score=47.30 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=51.5
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hcc
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~ln 304 (399)
.+|-|++||+.+|++++++.++.+..+.......-.. +..+ ....-|||.|.+.+++.... .++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~--s~~~-------------~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDT--SLYP-------------HMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCC--SSTT-------------CCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCcc--CCCC-------------CcceEEEEEeCCHHHHHHHHHHhC
Confidence 4699999999999999999999988765444422111 1111 12367999999999998877 689
Q ss_pred Cceeee
Q 015821 305 MAVIGG 310 (399)
Q Consensus 305 g~~l~G 310 (399)
|..|.+
T Consensus 67 g~~F~D 72 (91)
T 1uw4_A 67 GYVFLD 72 (91)
T ss_dssp TCEEEC
T ss_pred CcEEEc
Confidence 988743
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.14 E-value=0.012 Score=48.08 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=46.2
Q ss_pred cccceeecCCCCCCCHHHHHHHhhcc-CCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGL-NDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f-~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...+|.|.|||..+.++.|.-+|+.- ..=.|.|..|.... +-|+|+|.+...|+++|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL 64 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVL 64 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHh
Confidence 45899999999999999999999772 11138999988743 36899999999998764
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.08 E-value=0.0046 Score=50.26 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=42.1
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
+.++| ++|..+.-.+|..+|+.||.| .|+++.+ ..|||.|.+++.|..||.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD------------------------TsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------------------------TSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET------------------------TEEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC------------------------CeEEEEecCHHHHHHHHH
Confidence 44566 999999999999999999954 4666443 379999999999999985
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.35 E-value=0.019 Score=46.54 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=41.8
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
....++| ++|..+.-.||.++|+.| |- ..|+.+-|. -|||.|.+++.|..||
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~f----gg-v~I~WidDT-------sAlvvf~~~~~a~~al 66 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAF----GN-IQISWIDDT-------SAFVSLSQPEQVQIAV 66 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTT----CS-CCCEEEETT-------EEEEECSCHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhcc----CC-EEEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 3456677 999999999999999999 52 346666663 6999999999998764
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.65 E-value=0.023 Score=46.20 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=41.3
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..++| ++|..+.-.||.++|+.| | -..|+.+-|. -|||.|.+++.|..||
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f----g-gv~I~WidDT-------sAlvvf~~~~~a~~al 56 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF----G-NIQISWIDDT-------SAFVSLSQPEQVKIAV 56 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS----E-EEEEEEEETT-------EEEEEEEEECHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc----C-CEEEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 45677 999999999999999999 6 4456777663 6999999998887764
No 391
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.54 E-value=0.017 Score=59.14 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=41.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHHcc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ln 304 (399)
.|+|||. .|..+++.+|.++|++||+|.++.+-. +. .-||.|+|.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~----~~------------------g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE----SF------------------GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC----SS------------------SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc----cC------------------CeEEEEEeCCHHHHHHHHhcc
Confidence 6889998 799999999999999999999987721 11 149999999999999887443
Q ss_pred C
Q 015821 305 M 305 (399)
Q Consensus 305 g 305 (399)
+
T Consensus 110 ~ 110 (464)
T 3pq1_A 110 H 110 (464)
T ss_dssp C
T ss_pred C
Confidence 3
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.53 E-value=0.089 Score=42.02 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=44.4
Q ss_pred cceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCC--CCccEEEEEecCHHHHH
Q 015821 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR--VGKGIAYVLFKTRDEEW 396 (399)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg--~~kG~AFV~F~s~e~A~ 396 (399)
.+|.|++||+.+|++++.+.++.+ ..+....++....+. ..-.-|||.|.+.+++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~ 59 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM----PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 59 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC----CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc----ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHH
Confidence 478999999999999999999988 678888777665322 23357999999987764
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.45 E-value=0.069 Score=45.49 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=55.6
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeE-EEEeeecc--c-CCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH
Q 015821 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPI--I-DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (399)
Q Consensus 226 rtVfVgNLP~~vTee~L~~~Fs~~G~I~~-I~i~~~~~--~-~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al 301 (399)
.-|.|-+.|.+.+. .|..+|++||.|.+ +.+.+... . .....+ ++..-....+..|.|.+..+|.+||
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k-------~yP~f~g~NWikItYds~~~A~rAL 79 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQ-------FVPIFSGNSWTKITYDNPASAVDAL 79 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC------------------CCCCCEETTEEEEEBSSHHHHHHHH
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeecccccccccccccccccc-------ccCccCCCcEEEEEcCCHHHHHHHH
Confidence 45788888777654 56678999999865 21110000 0 000000 0000012358899999999999999
Q ss_pred HccCceeeeeeeEEecCC
Q 015821 302 AFNMAVIGGNHIRLDRAC 319 (399)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~ 319 (399)
..||..|.|..|-|.+..
T Consensus 80 ~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 80 LENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTTTCEETTEECEEEECC
T ss_pred HhCCeEeCcEEEEEEECC
Confidence 999999999988888775
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.13 E-value=0.074 Score=43.00 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=47.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHH-Hc
Q 015821 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (399)
Q Consensus 225 ~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al-~l 303 (399)
+-+|-|+.||+.+|++++.+.++.+-. +.+.. +...+.+.+ ...-.-|||.|.+.+++.... .+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~---~d~~~--fv~G~~s~~----------~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA---HDYFE--FFAADLSLY----------PHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS---EEECC--CCCCCSSSC----------CSCCCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc---cceEE--EeCCccCCC----------CCcceEEEEEeCCHHHHHHHHHHc
Confidence 456999999999999998877776533 33321 111111110 112357999999999998887 68
Q ss_pred cCceeee
Q 015821 304 NMAVIGG 310 (399)
Q Consensus 304 ng~~l~G 310 (399)
+|..|.+
T Consensus 74 ~g~~F~D 80 (97)
T 2l08_A 74 DGYIFLD 80 (97)
T ss_dssp TTEEEEC
T ss_pred CCcEEEe
Confidence 9888743
No 395
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.51 Score=39.07 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=48.4
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccC-CCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLN-DLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~-~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
..++|-|-|||-.+++..|+.+..++. ...|.|..|.+..|.. -|+|+|.+...|-+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKa 78 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKM 78 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHH
Confidence 458999999999999999999998871 1237789999988853 599999999988776
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=90.59 E-value=0.43 Score=39.90 Aligned_cols=54 Identities=9% Similarity=0.034 Sum_probs=44.6
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
..+.|.|-++|... -..|...|++| |.|....... ....-+|.|.++.+|++||
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~----G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL 76 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQY----GNILKHVMSN------TGNWMHIRYQSKLQARKAL 76 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTT----SCEEEEEECS------SSSEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhh----CcEEEeccCC------CCCeEEEEeCCHHHHHHHH
Confidence 45789999999885 67788999999 9999887621 2458999999999999996
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.77 E-value=0.13 Score=52.70 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=40.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
..+.|||. +|..+++.+|.++|++| |.|..+.+..+. | -||.|+|.+.+++..+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~----g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~ 105 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQF----GPINNHFFYESF--G---LYAVVEFCQKESIGSL 105 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGG----SCCCCEEEECSS--S---EEEEEECC---CCHHH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhc----CCcceEEEEccC--C---eEEEEEeCCHHHHHHH
Confidence 45899998 79999999999999999 999998876542 3 5999999998887654
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=85.01 E-value=0.71 Score=37.19 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=39.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCC--CCccEEEEEecCHHHHH
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR--VGKGIAYVLFKTRDEEW 396 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg--~~kG~AFV~F~s~e~A~ 396 (399)
.+-+|.|+.||+.+|++++.+.++.+ =.+....++....+- ..-.-|||.|.+.++..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~ 67 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPL----PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 67 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCC----SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCc----CccceEEEeCCccCCCCCcceEEEEEeCCHHHHH
Confidence 45789999999999999988888776 234443333322111 12245899999988764
No 399
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.57 E-value=4 Score=42.05 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=42.7
Q ss_pred CCcCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceeEEEeeCCHHHHHHHHH
Q 015821 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (399)
Q Consensus 223 ~~~rtVfVgNLP~~vTee~L~~~Fs~~G~I~~I~i~~~~~~~~~~~rk~~~i~~~~~~~~skG~AFV~F~s~e~A~~Al~ 302 (399)
...+.++|+ +|..+...+|..+|+.||.| .|+++.+ ..|||.|.+.+.|..++.
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------------------------t~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------------------------TSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------------------------SEEEEECSCHHHHHHHHH
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------------------------CeEEEEECCHHHHHHHHH
Confidence 345667776 99999999999999999964 4655222 369999999999999883
No 400
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.74 E-value=2.9 Score=34.02 Aligned_cols=53 Identities=9% Similarity=0.009 Sum_probs=40.1
Q ss_pred ccceeecCCCCCC-C----HHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhh
Q 015821 336 KKTVFVGNLPFDV-K----DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEI 398 (399)
Q Consensus 336 ~~tLfV~NLp~~~-t----eedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~A 398 (399)
.++|+|.||+..+ . .+.++.+|..| +.+....+++.- .-..|.|.+.++|.+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~----~~~~tF~~lkSF------RRirv~F~~~~~A~~A 62 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY----DKDTTFQYFKSF------KRVRINFSNPLSAADA 62 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT----CSSCEEEEETTT------TEEEEECSSTTHHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh----CcCcceeecCcc------eEEEEEeCChHHHHHH
Confidence 4789999998765 2 25778999999 667766665542 1468999999999876
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=62.02 E-value=12 Score=38.42 Aligned_cols=51 Identities=20% Similarity=0.353 Sum_probs=39.5
Q ss_pred ccceeecCCCCCCCHHHHHHHhhccCCCCCCeEEEEEeecCCCCCCccEEEEEecCHHHHHhhC
Q 015821 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~VrI~~d~~tg~~kG~AFV~F~s~e~A~~AL 399 (399)
...++|+ +|..+...+|.++|+.| |. ..|+++.+ ..|||.|.+.+.|..+|
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f----g~-v~V~widd-------t~a~V~~~~~~~a~~~l 490 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF----GN-IQISWIDD-------TSAFVSLSQPEQVQIAV 490 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG----CC-CEEEECSS-------SEEEEECSCHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc----CC-EEEEEEcC-------CeEEEEECCHHHHHHHH
Confidence 4566776 99999999999999999 64 35555444 26999999999987653
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=60.74 E-value=3.1 Score=35.26 Aligned_cols=60 Identities=12% Similarity=0.234 Sum_probs=39.4
Q ss_pred cccceeecCCCCCCCHHHHHHHhhccCCCCCCeEE-EEEeecC------------CCC-CCccEEEEEecCHHHHHhhC
Q 015821 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHP------------HMR-VGKGIAYVLFKTRDEEWEII 399 (399)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~Fs~f~~~~G~I~~-VrI~~d~------------~tg-~~kG~AFV~F~s~e~A~~AL 399 (399)
....|.|-+.|.... ..+...|++| |.|.. +.+.+.. ..+ ...+...|+|.++.+|.+||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~----G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL 79 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEF----GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL 79 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGG----SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhh----ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH
Confidence 446788888987654 5677889999 77765 2221100 000 13457899999999999996
Done!