Query 015822
Match_columns 399
No_of_seqs 530 out of 4884
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1163 DRG Predicted GTPase [ 100.0 1.2E-90 2.6E-95 650.1 33.0 364 1-367 2-365 (365)
2 KOG1486 GTP-binding protein DR 100.0 1.7E-79 3.7E-84 554.8 31.0 364 1-367 1-364 (364)
3 KOG1487 GTP-binding protein DR 100.0 1.1E-66 2.3E-71 473.3 22.2 357 3-367 2-358 (358)
4 PTZ00258 GTP-binding protein; 100.0 3.4E-43 7.3E-48 347.8 16.1 289 62-365 21-385 (390)
5 PRK09602 translation-associate 100.0 1.5E-42 3.2E-47 346.6 18.6 291 64-367 3-395 (396)
6 PRK09601 GTP-binding protein Y 100.0 4.4E-39 9.5E-44 315.2 15.6 285 63-365 3-361 (364)
7 cd01896 DRG The developmentall 100.0 1.9E-38 4.2E-43 297.1 18.5 232 64-295 2-233 (233)
8 COG0012 Predicted GTPase, prob 100.0 2.2E-38 4.9E-43 305.6 5.4 284 63-365 3-371 (372)
9 KOG1491 Predicted GTP-binding 100.0 8.1E-34 1.7E-38 268.0 12.2 286 62-364 20-387 (391)
10 TIGR00092 GTP-binding protein 100.0 2.7E-32 5.8E-37 267.4 13.1 281 63-364 3-364 (368)
11 COG1126 GlnQ ABC-type polar am 100.0 7.5E-28 1.6E-32 216.1 14.6 160 52-227 20-200 (240)
12 COG1136 SalX ABC-type antimicr 99.9 2.7E-27 5.8E-32 217.4 11.7 166 52-230 23-210 (226)
13 cd01899 Ygr210 Ygr210 subfamil 99.9 6.1E-27 1.3E-31 227.9 10.1 219 65-287 1-268 (318)
14 COG1116 TauB ABC-type nitrate/ 99.9 7.8E-26 1.7E-30 208.3 13.3 154 52-227 21-195 (248)
15 COG1135 AbcC ABC-type metal io 99.9 1.7E-25 3.7E-30 210.5 12.6 184 52-259 24-229 (339)
16 KOG1489 Predicted GTP-binding 99.9 1.6E-25 3.6E-30 210.3 9.2 158 62-285 196-364 (366)
17 COG3839 MalK ABC-type sugar tr 99.9 8.4E-25 1.8E-29 212.1 13.7 182 52-261 21-223 (338)
18 COG1120 FepC ABC-type cobalami 99.9 7.6E-25 1.6E-29 205.0 12.4 173 52-250 20-217 (258)
19 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2E-24 4.4E-29 201.2 14.8 168 52-248 22-215 (254)
20 COG2884 FtsE Predicted ATPase 99.9 1.8E-24 3.8E-29 190.5 13.1 162 52-227 20-201 (223)
21 COG0488 Uup ATPase components 99.9 1.8E-24 3.9E-29 222.7 15.1 193 3-225 256-498 (530)
22 COG4181 Predicted ABC-type tra 99.9 1.5E-24 3.2E-29 187.9 11.3 168 52-232 28-216 (228)
23 COG1125 OpuBA ABC-type proline 99.9 1.9E-24 4.1E-29 198.1 12.1 183 52-260 19-224 (309)
24 COG3842 PotA ABC-type spermidi 99.9 3.6E-24 7.9E-29 208.8 13.3 181 52-260 23-225 (352)
25 COG0536 Obg Predicted GTPase [ 99.9 1.2E-24 2.5E-29 207.0 9.4 163 62-290 159-335 (369)
26 COG0486 ThdF Predicted GTPase 99.9 1.4E-24 3.1E-29 214.9 9.6 185 62-330 217-408 (454)
27 cd01666 TGS_DRG_C TGS_DRG_C: 99.9 1.2E-23 2.5E-28 160.8 9.6 75 289-366 1-75 (75)
28 COG1124 DppF ABC-type dipeptid 99.9 1.9E-23 4E-28 191.2 12.6 175 51-250 24-220 (252)
29 COG3638 ABC-type phosphate/pho 99.9 1.8E-23 3.9E-28 190.1 12.2 167 52-232 22-218 (258)
30 COG1118 CysA ABC-type sulfate/ 99.9 2.5E-23 5.3E-28 195.6 13.4 188 52-264 20-230 (345)
31 COG3840 ThiQ ABC-type thiamine 99.9 3.6E-23 7.9E-28 181.0 13.4 158 52-226 15-193 (231)
32 PF02421 FeoB_N: Ferrous iron 99.9 2E-24 4.4E-29 188.7 5.5 148 64-283 2-156 (156)
33 COG1159 Era GTPase [General fu 99.9 1.6E-23 3.5E-28 196.9 11.2 217 64-372 8-237 (298)
34 COG0411 LivG ABC-type branched 99.9 1.6E-23 3.4E-28 191.8 9.8 187 52-263 22-241 (250)
35 PRK12299 obgE GTPase CgtA; Rev 99.9 5.8E-23 1.3E-27 201.7 11.7 161 62-288 158-328 (335)
36 PRK12296 obgE GTPase CgtA; Rev 99.9 3.9E-23 8.5E-28 210.5 10.2 173 62-291 159-343 (500)
37 cd01900 YchF YchF subfamily. 99.9 2.3E-23 5.1E-28 198.3 7.9 205 65-279 1-244 (274)
38 COG2262 HflX GTPases [General 99.9 1.4E-22 3.1E-27 197.4 13.4 197 25-289 157-357 (411)
39 PRK12298 obgE GTPase CgtA; Rev 99.9 1E-22 2.2E-27 203.7 12.4 164 63-289 160-334 (390)
40 TIGR00960 3a0501s02 Type II (G 99.9 2.5E-22 5.3E-27 185.9 14.0 160 52-225 21-200 (216)
41 COG1117 PstB ABC-type phosphat 99.9 1.3E-22 2.9E-27 181.7 11.5 165 51-227 24-212 (253)
42 COG1122 CbiO ABC-type cobalt t 99.9 2.5E-22 5.4E-27 187.3 13.6 173 52-250 22-217 (235)
43 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.1E-22 2.5E-27 188.3 11.2 163 52-227 22-205 (218)
44 TIGR01186 proV glycine betaine 99.9 1.9E-22 4.2E-27 199.9 13.4 176 52-250 11-208 (363)
45 COG1127 Ttg2A ABC-type transpo 99.9 2.1E-22 4.5E-27 183.7 12.0 160 52-225 26-208 (263)
46 TIGR02314 ABC_MetN D-methionin 99.9 3.9E-22 8.5E-27 196.5 14.8 176 52-250 23-219 (343)
47 PRK11650 ugpC glycerol-3-phosp 99.9 4.3E-22 9.2E-27 197.5 14.5 171 52-250 22-213 (356)
48 cd03261 ABC_Org_Solvent_Resist 99.9 5.8E-22 1.3E-26 185.8 14.5 160 52-225 18-199 (235)
49 PRK12297 obgE GTPase CgtA; Rev 99.9 1.4E-22 3.1E-27 203.9 11.0 162 63-290 159-329 (424)
50 TIGR02673 FtsE cell division A 99.9 5.6E-22 1.2E-26 183.2 14.0 161 51-225 19-199 (214)
51 COG1131 CcmA ABC-type multidru 99.9 4.7E-22 1E-26 192.3 13.9 174 52-252 23-217 (293)
52 TIGR02729 Obg_CgtA Obg family 99.9 2.1E-22 4.5E-27 197.5 11.6 160 62-287 157-328 (329)
53 TIGR03156 GTP_HflX GTP-binding 99.9 7.3E-23 1.6E-27 202.4 8.3 193 26-286 155-350 (351)
54 TIGR02211 LolD_lipo_ex lipopro 99.9 3.2E-22 7E-27 185.7 11.9 162 52-226 23-205 (221)
55 COG4175 ProV ABC-type proline/ 99.9 2.5E-22 5.3E-27 189.2 10.7 162 52-226 46-228 (386)
56 PRK11629 lolD lipoprotein tran 99.9 5.7E-22 1.2E-26 185.6 13.0 162 52-226 27-209 (233)
57 PRK11432 fbpC ferric transport 99.9 7.6E-22 1.7E-26 195.3 14.4 172 52-251 24-216 (351)
58 COG1160 Predicted GTPases [Gen 99.9 8.9E-23 1.9E-27 201.6 7.5 155 63-287 4-164 (444)
59 TIGR01188 drrA daunorubicin re 99.9 9.2E-22 2E-26 191.4 14.4 173 52-251 11-203 (302)
60 TIGR03265 PhnT2 putative 2-ami 99.9 1.2E-21 2.5E-26 194.2 15.1 172 52-251 22-214 (353)
61 cd03259 ABC_Carb_Solutes_like 99.9 1.6E-21 3.4E-26 180.1 14.9 156 51-225 17-193 (213)
62 cd03225 ABC_cobalt_CbiO_domain 99.9 1.3E-21 2.8E-26 180.4 14.2 157 52-225 19-196 (211)
63 PRK10584 putative ABC transpor 99.9 5.8E-22 1.3E-26 184.9 12.1 161 52-225 28-209 (228)
64 PRK10851 sulfate/thiosulfate t 99.9 1.4E-21 3E-26 193.7 14.8 172 52-251 20-216 (353)
65 PRK13537 nodulation ABC transp 99.9 1.4E-21 3E-26 190.4 14.6 173 52-251 25-217 (306)
66 TIGR03608 L_ocin_972_ABC putat 99.9 1E-21 2.2E-26 180.3 12.8 163 52-227 16-198 (206)
67 TIGR03258 PhnT 2-aminoethylpho 99.9 1.5E-21 3.3E-26 193.8 14.8 172 52-251 23-218 (362)
68 cd03292 ABC_FtsE_transporter F 99.9 1.6E-21 3.5E-26 180.0 13.9 160 52-225 19-198 (214)
69 PRK13536 nodulation factor exp 99.9 1.6E-21 3.5E-26 192.3 14.7 181 52-259 59-259 (340)
70 COG0444 DppD ABC-type dipeptid 99.9 9.3E-22 2E-26 187.3 12.4 193 51-261 22-243 (316)
71 cd03226 ABC_cobalt_CbiO_domain 99.9 1.5E-21 3.2E-26 179.3 13.4 152 52-225 18-188 (205)
72 cd03219 ABC_Mj1267_LivG_branch 99.9 1.6E-21 3.6E-26 182.7 14.0 174 51-249 17-220 (236)
73 cd03235 ABC_Metallic_Cations A 99.9 1.6E-21 3.4E-26 180.1 13.6 153 51-225 16-194 (213)
74 PRK10070 glycine betaine trans 99.9 1.5E-21 3.2E-26 195.8 14.4 161 52-225 46-227 (400)
75 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2.3E-21 5.1E-26 185.5 14.9 162 51-225 41-223 (269)
76 PRK10636 putative ABC transpor 99.9 6.8E-21 1.5E-25 202.6 19.8 145 52-226 330-490 (638)
77 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.7E-21 3.6E-26 180.9 13.2 152 52-225 22-194 (220)
78 PRK11000 maltose/maltodextrin 99.9 2.3E-21 5.1E-26 193.3 15.1 170 52-249 21-211 (369)
79 PRK09452 potA putrescine/sperm 99.9 2.1E-21 4.5E-26 193.6 14.7 172 52-251 32-224 (375)
80 PRK10908 cell division protein 99.9 2.7E-21 5.8E-26 179.8 14.5 161 52-226 20-200 (222)
81 TIGR01288 nodI ATP-binding ABC 99.9 2.3E-21 5E-26 188.7 14.5 174 51-251 21-214 (303)
82 cd03296 ABC_CysA_sulfate_impor 99.9 3E-21 6.4E-26 181.5 14.7 155 52-225 20-199 (239)
83 TIGR02315 ABC_phnC phosphonate 99.9 2.6E-21 5.7E-26 182.1 14.3 174 51-248 19-222 (243)
84 cd03262 ABC_HisP_GlnQ_permease 99.9 3.8E-21 8.2E-26 177.4 15.0 159 52-225 18-197 (213)
85 TIGR00436 era GTP-binding prot 99.9 2E-21 4.2E-26 186.1 13.4 154 64-288 2-164 (270)
86 PRK11153 metN DL-methionine tr 99.9 2.3E-21 5.1E-26 191.6 14.3 176 52-250 23-219 (343)
87 TIGR01166 cbiO cobalt transpor 99.9 2.5E-21 5.4E-26 175.7 13.3 159 51-224 9-188 (190)
88 cd03301 ABC_MalK_N The N-termi 99.9 4E-21 8.7E-26 177.3 14.9 156 51-225 17-193 (213)
89 COG4619 ABC-type uncharacteriz 99.9 4.7E-22 1E-26 171.9 7.9 157 52-225 21-196 (223)
90 COG1137 YhbG ABC-type (unclass 99.9 2.5E-22 5.3E-27 178.3 6.2 158 51-224 21-200 (243)
91 COG4598 HisP ABC-type histidin 99.9 1.7E-21 3.7E-26 170.2 11.3 163 52-227 24-216 (256)
92 cd03256 ABC_PhnC_transporter A 99.9 3.8E-21 8.2E-26 180.8 14.7 174 52-248 19-221 (241)
93 PRK09536 btuD corrinoid ABC tr 99.9 2.7E-21 5.9E-26 194.0 14.2 172 52-249 21-216 (402)
94 cd03298 ABC_ThiQ_thiamine_tran 99.9 4.8E-21 1E-25 176.6 14.7 156 52-226 16-192 (211)
95 cd03265 ABC_DrrA DrrA is the A 99.9 3.5E-21 7.7E-26 178.7 13.9 156 52-225 18-194 (220)
96 PRK15079 oligopeptide ABC tran 99.9 3.5E-21 7.7E-26 189.3 14.5 177 52-251 39-241 (331)
97 TIGR02142 modC_ABC molybdenum 99.9 4.2E-21 9.1E-26 190.6 15.2 176 52-250 15-210 (354)
98 PRK11144 modC molybdate transp 99.9 3.7E-21 8E-26 190.9 14.7 176 52-250 16-207 (352)
99 cd03218 ABC_YhbG The ABC trans 99.9 5.7E-21 1.2E-25 178.6 14.9 158 51-224 17-194 (232)
100 PRK09473 oppD oligopeptide tra 99.9 4E-21 8.6E-26 188.9 14.4 181 52-251 34-241 (330)
101 PRK11022 dppD dipeptide transp 99.9 4.5E-21 9.7E-26 188.3 14.5 182 52-251 25-233 (326)
102 PRK13641 cbiO cobalt transport 99.9 4.8E-21 1E-25 185.0 14.4 162 51-225 24-207 (287)
103 cd03264 ABC_drug_resistance_li 99.9 4.1E-21 8.9E-26 177.0 13.2 157 51-226 17-192 (211)
104 cd03266 ABC_NatA_sodium_export 99.9 4.8E-21 1E-25 177.4 13.7 157 51-225 22-198 (218)
105 cd03263 ABC_subfamily_A The AB 99.9 4.4E-21 9.6E-26 177.9 13.3 158 51-226 19-195 (220)
106 cd03258 ABC_MetN_methionine_tr 99.9 5.9E-21 1.3E-25 178.7 14.2 161 51-225 22-203 (233)
107 PRK11264 putative amino-acid A 99.9 7.9E-21 1.7E-25 179.7 15.1 178 51-250 20-222 (250)
108 cd03269 ABC_putative_ATPase Th 99.9 5.4E-21 1.2E-25 176.2 13.5 153 52-225 18-190 (210)
109 PRK11308 dppF dipeptide transp 99.9 5.8E-21 1.3E-25 187.5 14.4 177 52-251 33-234 (327)
110 TIGR03415 ABC_choXWV_ATP choli 99.9 4.4E-21 9.4E-26 191.2 13.6 161 52-225 42-227 (382)
111 TIGR03522 GldA_ABC_ATP gliding 99.9 6.3E-21 1.4E-25 185.4 14.4 172 52-251 20-211 (301)
112 PRK11607 potG putrescine trans 99.9 5.5E-21 1.2E-25 190.8 14.3 171 52-251 37-229 (377)
113 PRK13643 cbiO cobalt transport 99.9 7.5E-21 1.6E-25 183.8 14.6 177 51-250 23-222 (288)
114 cd03268 ABC_BcrA_bacitracin_re 99.9 5.4E-21 1.2E-25 175.9 12.9 154 52-226 18-189 (208)
115 COG4559 ABC-type hemin transpo 99.9 5.3E-21 1.1E-25 171.3 12.3 174 51-250 18-219 (259)
116 PRK15093 antimicrobial peptide 99.9 6.3E-21 1.4E-25 187.7 14.1 182 52-251 25-238 (330)
117 PRK11248 tauB taurine transpor 99.9 9.2E-21 2E-25 180.0 14.7 153 51-225 18-191 (255)
118 cd03297 ABC_ModC_molybdenum_tr 99.9 1.1E-20 2.4E-25 174.7 14.7 159 52-225 16-194 (214)
119 TIGR01184 ntrCD nitrate transp 99.8 1.2E-20 2.7E-25 176.4 15.0 152 52-225 3-177 (230)
120 PRK11247 ssuB aliphatic sulfon 99.8 1E-20 2.2E-25 179.8 14.5 151 52-225 30-196 (257)
121 cd03224 ABC_TM1139_LivF_branch 99.8 9.9E-21 2.2E-25 175.7 13.8 159 51-225 17-194 (222)
122 PRK11831 putative ABC transpor 99.8 1E-20 2.2E-25 181.1 14.2 160 52-225 25-206 (269)
123 TIGR03411 urea_trans_UrtD urea 99.8 1.1E-20 2.3E-25 178.0 14.1 158 52-225 20-204 (242)
124 PRK13650 cbiO cobalt transport 99.8 5.5E-21 1.2E-25 183.9 11.8 171 52-249 25-217 (279)
125 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 8.4E-21 1.8E-25 178.1 12.7 158 52-227 19-197 (236)
126 PRK13538 cytochrome c biogenes 99.8 5.7E-21 1.2E-25 175.4 11.3 157 52-227 19-193 (204)
127 PRK13647 cbiO cobalt transport 99.8 1.2E-20 2.7E-25 181.0 14.0 173 51-249 22-215 (274)
128 PRK13651 cobalt transporter AT 99.8 9.9E-21 2.2E-25 184.2 13.3 176 52-250 25-243 (305)
129 PRK11124 artP arginine transpo 99.8 1.8E-20 3.8E-25 176.5 14.5 162 52-226 20-204 (242)
130 PRK13649 cbiO cobalt transport 99.8 1.6E-20 3.5E-25 180.7 14.5 162 51-225 24-207 (280)
131 PRK13644 cbiO cobalt transport 99.8 1.6E-20 3.5E-25 180.2 14.4 174 51-250 19-213 (274)
132 PRK13634 cbiO cobalt transport 99.8 1.4E-20 3E-25 182.1 14.1 176 51-248 24-222 (290)
133 cd03231 ABC_CcmA_heme_exporter 99.8 1.5E-20 3.2E-25 172.3 13.4 156 51-225 17-187 (201)
134 PRK13540 cytochrome c biogenes 99.8 7.5E-21 1.6E-25 174.0 11.3 159 52-231 19-195 (200)
135 PRK09493 glnQ glutamine ABC tr 99.8 1.9E-20 4.2E-25 176.0 14.3 161 51-226 18-199 (240)
136 cd03260 ABC_PstB_phosphate_tra 99.8 1.4E-20 3E-25 175.5 13.2 159 52-225 18-202 (227)
137 PRK10771 thiQ thiamine transpo 99.8 2E-20 4.3E-25 175.1 14.3 155 52-225 17-192 (232)
138 PRK13646 cbiO cobalt transport 99.8 1.5E-20 3.3E-25 181.4 13.8 175 51-249 24-223 (286)
139 PRK10895 lipopolysaccharide AB 99.8 8.9E-21 1.9E-25 178.4 11.7 157 52-224 21-198 (241)
140 PRK10247 putative ABC transpor 99.8 1.1E-20 2.3E-25 176.2 12.1 159 51-226 24-201 (225)
141 PRK11300 livG leucine/isoleuci 99.8 2.1E-20 4.4E-25 177.4 14.3 158 52-225 23-216 (255)
142 PRK13637 cbiO cobalt transport 99.8 2.3E-20 5.1E-25 180.2 14.7 174 52-249 25-222 (287)
143 TIGR01189 ccmA heme ABC export 99.8 1.8E-20 3.9E-25 171.2 13.2 153 52-224 18-188 (198)
144 cd03295 ABC_OpuCA_Osmoprotecti 99.8 2.2E-20 4.8E-25 175.9 14.2 157 52-225 19-198 (242)
145 COG1160 Predicted GTPases [Gen 99.8 9.6E-21 2.1E-25 187.3 12.1 204 62-338 178-425 (444)
146 PRK10619 histidine/lysine/argi 99.8 2.5E-20 5.4E-25 177.1 14.6 176 52-249 23-229 (257)
147 cd03257 ABC_NikE_OppD_transpor 99.8 2.6E-20 5.6E-25 173.5 14.4 161 51-225 22-208 (228)
148 COG4608 AppF ABC-type oligopep 99.8 1.1E-20 2.4E-25 176.4 11.7 151 51-259 30-197 (268)
149 COG1123 ATPase components of v 99.8 1.6E-20 3.6E-25 190.8 13.6 192 51-260 26-243 (539)
150 TIGR00972 3a0107s01c2 phosphat 99.8 3E-20 6.6E-25 175.5 14.6 179 51-249 18-220 (247)
151 PRK13638 cbiO cobalt transport 99.8 2.8E-20 6E-25 178.3 14.4 161 51-226 18-199 (271)
152 PRK11147 ABC transporter ATPas 99.8 5.8E-20 1.3E-24 195.7 18.3 146 52-225 337-499 (635)
153 TIGR01277 thiQ thiamine ABC tr 99.8 4.7E-20 1E-24 170.3 15.3 155 52-225 16-191 (213)
154 TIGR03005 ectoine_ehuA ectoine 99.8 3.5E-20 7.6E-25 175.6 14.7 161 52-225 18-209 (252)
155 TIGR02769 nickel_nikE nickel i 99.8 2.8E-20 6.1E-25 177.6 14.1 176 52-250 29-229 (265)
156 COG1123 ATPase components of v 99.8 2.2E-20 4.7E-25 189.9 13.8 184 52-259 309-517 (539)
157 PRK10575 iron-hydroxamate tran 99.8 3.6E-20 7.8E-25 176.9 14.6 157 52-225 29-210 (265)
158 TIGR03873 F420-0_ABC_ATP propo 99.8 3.8E-20 8.2E-25 175.8 14.7 171 52-248 19-213 (256)
159 PRK10253 iron-enterobactin tra 99.8 3.5E-20 7.6E-25 176.9 14.5 157 52-225 25-206 (265)
160 TIGR01978 sufC FeS assembly AT 99.8 4.8E-20 1E-24 173.5 15.0 161 52-226 18-207 (243)
161 PRK14247 phosphate ABC transpo 99.8 4.6E-20 9.9E-25 174.5 14.8 163 51-225 20-207 (250)
162 PRK11614 livF leucine/isoleuci 99.8 2.8E-20 6.1E-25 174.6 13.2 173 51-249 22-214 (237)
163 PRK10762 D-ribose transporter 99.8 2.8E-20 6.1E-25 193.0 14.4 163 52-230 22-209 (501)
164 TIGR02324 CP_lyasePhnL phospho 99.8 1.8E-20 3.8E-25 174.4 11.6 163 51-226 25-212 (224)
165 PRK11058 GTPase HflX; Provisio 99.8 9.4E-21 2E-25 191.6 10.5 196 24-288 161-362 (426)
166 PRK11231 fecE iron-dicitrate t 99.8 4.1E-20 8.9E-25 175.4 14.2 157 52-225 20-200 (255)
167 PRK13543 cytochrome c biogenes 99.8 3.9E-20 8.3E-25 171.2 13.6 153 52-225 29-199 (214)
168 PRK14242 phosphate transporter 99.8 6.3E-20 1.4E-24 173.9 15.3 165 51-225 23-210 (253)
169 PRK13635 cbiO cobalt transport 99.8 4.2E-20 9.2E-25 177.7 14.2 159 51-226 24-204 (279)
170 PRK13632 cbiO cobalt transport 99.8 2.2E-20 4.9E-25 178.9 11.9 159 51-226 26-206 (271)
171 PRK13539 cytochrome c biogenes 99.8 2.7E-20 5.8E-25 171.3 11.8 153 52-226 20-190 (207)
172 COG4604 CeuD ABC-type enteroch 99.8 2.5E-20 5.3E-25 165.2 11.0 166 52-250 19-214 (252)
173 cd03245 ABCC_bacteriocin_expor 99.8 1.4E-20 3E-25 174.6 10.0 158 51-227 21-203 (220)
174 PRK09984 phosphonate/organopho 99.8 6.2E-20 1.3E-24 174.9 14.6 165 51-225 21-215 (262)
175 PRK14273 phosphate ABC transpo 99.8 8.1E-20 1.8E-24 173.3 15.2 181 51-250 24-227 (254)
176 PRK13652 cbiO cobalt transport 99.8 5.7E-20 1.2E-24 176.6 14.3 172 51-249 21-215 (277)
177 TIGR02982 heterocyst_DevA ABC 99.8 2.9E-20 6.3E-25 172.6 11.8 162 52-227 23-206 (220)
178 PRK09700 D-allose transporter 99.8 4.2E-20 9E-25 192.2 14.2 160 51-226 22-208 (510)
179 PRK14267 phosphate ABC transpo 99.8 5.8E-20 1.3E-24 174.1 13.9 165 51-225 21-210 (253)
180 PRK13549 xylose transporter AT 99.8 5.2E-20 1.1E-24 191.3 14.8 162 51-226 22-206 (506)
181 PRK13639 cbiO cobalt transport 99.8 6.1E-20 1.3E-24 176.3 14.1 175 51-249 19-214 (275)
182 PRK11701 phnK phosphonate C-P 99.8 4.1E-20 8.9E-25 175.8 12.8 164 51-227 23-216 (258)
183 PRK15439 autoinducer 2 ABC tra 99.8 5E-20 1.1E-24 191.5 14.5 158 52-225 29-202 (510)
184 PRK13631 cbiO cobalt transport 99.8 5.9E-20 1.3E-24 179.9 14.1 177 51-251 43-255 (320)
185 PRK13541 cytochrome c biogenes 99.8 2.9E-20 6.3E-25 169.5 10.9 152 52-227 18-187 (195)
186 PRK13548 hmuV hemin importer A 99.8 9.6E-20 2.1E-24 173.3 14.6 171 52-248 20-217 (258)
187 PRK15112 antimicrobial peptide 99.8 1E-19 2.2E-24 173.9 14.9 171 52-248 31-226 (267)
188 PRK14250 phosphate ABC transpo 99.8 5.3E-20 1.2E-24 173.3 12.7 156 51-225 20-194 (241)
189 PRK13648 cbiO cobalt transport 99.8 9.9E-20 2.1E-24 174.2 14.7 173 51-250 26-220 (269)
190 PRK13633 cobalt transporter AT 99.8 8.7E-20 1.9E-24 175.7 14.4 172 52-249 28-221 (280)
191 PRK10261 glutathione transport 99.8 4.8E-20 1E-24 195.8 13.8 176 52-250 342-542 (623)
192 COG4525 TauB ABC-type taurine 99.8 1E-19 2.2E-24 161.0 13.5 154 52-227 23-197 (259)
193 COG4555 NatA ABC-type Na+ tran 99.8 3.9E-20 8.5E-25 164.5 10.8 179 52-258 20-219 (245)
194 PRK13636 cbiO cobalt transport 99.8 9.4E-20 2E-24 175.7 14.4 175 52-250 24-220 (283)
195 PRK14241 phosphate transporter 99.8 1.1E-19 2.3E-24 172.9 14.4 164 52-225 22-209 (258)
196 PRK11288 araG L-arabinose tran 99.8 7.9E-20 1.7E-24 189.7 14.6 159 52-226 22-203 (501)
197 PRK09700 D-allose transporter 99.8 8.8E-20 1.9E-24 189.7 14.9 158 52-225 281-471 (510)
198 PRK10982 galactose/methyl gala 99.8 7.5E-20 1.6E-24 189.4 14.3 158 52-225 16-196 (491)
199 TIGR03410 urea_trans_UrtE urea 99.8 6.5E-20 1.4E-24 171.3 12.5 158 51-225 17-194 (230)
200 PLN03073 ABC transporter F fam 99.8 2.3E-19 5E-24 192.3 18.1 146 52-226 527-687 (718)
201 TIGR03740 galliderm_ABC gallid 99.8 7.5E-20 1.6E-24 170.1 12.6 152 52-226 18-187 (223)
202 cd03267 ABC_NatA_like Similar 99.8 1.8E-19 3.9E-24 169.2 15.2 157 51-225 38-216 (236)
203 PRK10261 glutathione transport 99.8 8.4E-20 1.8E-24 194.0 14.5 178 52-251 34-248 (623)
204 COG3845 ABC-type uncharacteriz 99.8 1E-19 2.2E-24 180.8 14.0 167 51-233 21-211 (501)
205 PRK13640 cbiO cobalt transport 99.8 5.2E-20 1.1E-24 177.4 11.6 160 51-227 24-208 (282)
206 cd03214 ABC_Iron-Siderophores_ 99.8 2.8E-20 6.1E-25 167.5 9.0 128 52-225 17-160 (180)
207 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1.7E-19 3.6E-24 168.1 14.3 148 52-225 40-204 (224)
208 PRK14269 phosphate ABC transpo 99.8 1.7E-19 3.8E-24 170.2 14.7 176 52-250 20-219 (246)
209 TIGR02323 CP_lyasePhnK phospho 99.8 7.9E-20 1.7E-24 173.2 12.3 162 51-225 20-211 (253)
210 COG0488 Uup ATPase components 99.8 5.6E-20 1.2E-24 189.5 12.1 170 52-234 21-222 (530)
211 cd03300 ABC_PotA_N PotA is an 99.8 7.7E-20 1.7E-24 171.2 12.0 156 51-225 17-193 (232)
212 PRK15134 microcin C ABC transp 99.8 1.3E-19 2.9E-24 189.2 14.8 168 51-226 26-220 (529)
213 PRK14268 phosphate ABC transpo 99.8 2E-19 4.4E-24 171.0 14.7 181 51-250 29-231 (258)
214 PRK13645 cbiO cobalt transport 99.8 1.5E-19 3.2E-24 174.8 14.0 162 51-225 28-213 (289)
215 PRK11288 araG L-arabinose tran 99.8 1.5E-19 3.2E-24 187.7 14.9 160 51-226 270-459 (501)
216 PRK10744 pstB phosphate transp 99.8 2.2E-19 4.8E-24 170.9 14.9 164 52-225 31-217 (260)
217 PRK14245 phosphate ABC transpo 99.8 2.2E-19 4.8E-24 169.9 14.7 164 52-225 21-207 (250)
218 COG4988 CydD ABC-type transpor 99.8 1.4E-19 3E-24 183.6 13.9 178 51-259 338-541 (559)
219 cd03299 ABC_ModC_like Archeal 99.8 8.8E-20 1.9E-24 171.1 11.8 155 52-225 17-192 (235)
220 cd01898 Obg Obg subfamily. Th 99.8 6.6E-20 1.4E-24 162.0 10.1 160 64-286 2-169 (170)
221 PRK14259 phosphate ABC transpo 99.8 2E-19 4.4E-24 172.1 14.2 178 51-247 30-228 (269)
222 TIGR00968 3a0106s01 sulfate AB 99.8 1.3E-19 2.7E-24 170.3 12.5 155 52-225 18-193 (237)
223 PRK10762 D-ribose transporter 99.8 2E-19 4.2E-24 186.7 15.1 159 51-225 269-457 (501)
224 TIGR02633 xylG D-xylose ABC tr 99.8 1.9E-19 4.1E-24 186.8 14.9 161 51-225 18-203 (500)
225 PRK14235 phosphate transporter 99.8 1.9E-19 4.2E-24 172.1 13.8 164 52-225 37-224 (267)
226 COG1129 MglA ABC-type sugar tr 99.8 2.1E-19 4.5E-24 181.6 14.5 165 52-232 26-215 (500)
227 PRK13642 cbiO cobalt transport 99.8 1E-19 2.2E-24 174.9 11.7 173 51-250 24-218 (277)
228 PRK09544 znuC high-affinity zi 99.8 1.8E-19 3.9E-24 170.7 13.1 144 52-225 22-183 (251)
229 COG4152 ABC-type uncharacteriz 99.8 1.7E-19 3.6E-24 164.8 12.1 160 52-232 20-200 (300)
230 PRK13549 xylose transporter AT 99.8 2.4E-19 5.1E-24 186.4 14.9 160 52-226 280-468 (506)
231 cd03234 ABCG_White The White s 99.8 1.9E-19 4.2E-24 167.8 12.8 156 51-223 24-203 (226)
232 PRK14248 phosphate ABC transpo 99.8 3.3E-19 7.1E-24 170.5 14.4 179 52-250 39-241 (268)
233 PRK14244 phosphate ABC transpo 99.8 3.2E-19 6.9E-24 168.9 14.0 164 52-225 23-210 (251)
234 cd03237 ABC_RNaseL_inhibitor_d 99.8 2.3E-19 5E-24 169.5 12.9 146 52-226 12-179 (246)
235 cd03254 ABCC_Glucan_exporter_l 99.8 7.4E-20 1.6E-24 170.7 9.4 170 51-249 20-214 (229)
236 cd03248 ABCC_TAP TAP, the Tran 99.8 7.2E-20 1.6E-24 170.5 9.1 159 51-226 31-212 (226)
237 COG4161 ArtP ABC-type arginine 99.8 1.4E-19 3E-24 155.7 10.0 159 58-227 24-205 (242)
238 PRK15439 autoinducer 2 ABC tra 99.8 3.2E-19 7E-24 185.5 14.9 159 52-226 281-466 (510)
239 cd01878 HflX HflX subfamily. 99.8 8.6E-20 1.9E-24 167.1 9.4 194 26-287 7-204 (204)
240 PRK14272 phosphate ABC transpo 99.8 5.5E-19 1.2E-23 167.3 14.9 181 51-250 21-225 (252)
241 PRK14256 phosphate ABC transpo 99.8 5.8E-19 1.3E-23 167.2 15.1 164 52-225 22-209 (252)
242 TIGR02770 nickel_nikD nickel i 99.8 4E-19 8.7E-24 166.1 13.8 175 52-250 4-204 (230)
243 PRK15134 microcin C ABC transp 99.8 2.7E-19 5.9E-24 186.8 14.0 160 52-226 304-489 (529)
244 cd03251 ABCC_MsbA MsbA is an e 99.8 2.4E-19 5.2E-24 167.8 12.2 158 51-226 19-200 (234)
245 PRK14251 phosphate ABC transpo 99.8 5.2E-19 1.1E-23 167.4 14.7 164 52-225 22-208 (251)
246 PRK14275 phosphate ABC transpo 99.8 4.9E-19 1.1E-23 170.9 14.7 164 52-225 57-243 (286)
247 PRK15056 manganese/iron transp 99.8 2.8E-19 6.1E-24 171.4 12.9 154 52-225 25-204 (272)
248 PRK14237 phosphate transporter 99.8 5.8E-19 1.3E-23 168.7 15.0 179 52-250 38-240 (267)
249 TIGR02633 xylG D-xylose ABC tr 99.8 4.3E-19 9.3E-24 184.2 15.2 160 52-226 278-466 (500)
250 TIGR03771 anch_rpt_ABC anchore 99.8 1.8E-19 4E-24 167.7 11.2 148 56-225 2-175 (223)
251 PRK14274 phosphate ABC transpo 99.8 4.9E-19 1.1E-23 168.4 14.3 164 52-225 30-216 (259)
252 PRK14239 phosphate transporter 99.8 7.2E-19 1.6E-23 166.5 15.0 181 51-250 22-225 (252)
253 PRK09580 sufC cysteine desulfu 99.8 5.5E-19 1.2E-23 166.8 14.2 162 51-226 18-208 (248)
254 CHL00131 ycf16 sulfate ABC tra 99.8 4.5E-19 9.7E-24 167.9 13.6 162 52-227 25-215 (252)
255 PRK13547 hmuV hemin importer A 99.8 6.2E-19 1.3E-23 169.0 14.6 178 52-248 19-231 (272)
256 PRK14254 phosphate ABC transpo 99.8 3.4E-19 7.4E-24 171.9 12.8 164 52-225 57-241 (285)
257 PRK14271 phosphate ABC transpo 99.8 8.6E-19 1.9E-23 168.4 15.2 179 52-250 39-240 (276)
258 PRK10938 putative molybdenum t 99.8 2.9E-19 6.3E-24 185.0 12.8 158 51-225 20-197 (490)
259 PRK10419 nikE nickel transport 99.8 6.7E-19 1.5E-23 168.4 14.4 161 51-225 29-214 (268)
260 PRK14240 phosphate transporter 99.8 3.4E-19 7.4E-24 168.6 12.1 164 52-225 21-207 (250)
261 COG4172 ABC-type uncharacteriz 99.8 4.1E-19 8.9E-24 172.2 12.8 192 51-260 27-246 (534)
262 PRK10418 nikD nickel transport 99.8 7.7E-19 1.7E-23 166.7 14.5 159 52-225 21-203 (254)
263 PRK15064 ABC transporter ATP-b 99.8 4.7E-19 1E-23 185.1 13.6 147 52-226 337-498 (530)
264 KOG1191 Mitochondrial GTPase [ 99.8 5.4E-20 1.2E-24 182.0 6.1 211 62-339 268-495 (531)
265 PRK03695 vitamin B12-transport 99.8 4.8E-19 1E-23 167.5 12.4 157 51-225 13-195 (248)
266 COG4674 Uncharacterized ABC-ty 99.8 4.4E-19 9.6E-24 157.0 11.2 191 52-267 23-241 (249)
267 PRK14270 phosphate ABC transpo 99.8 1.1E-18 2.4E-23 165.2 14.8 165 51-225 21-208 (251)
268 COG0410 LivF ABC-type branched 99.8 4.1E-19 8.8E-24 161.7 11.2 158 52-225 21-199 (237)
269 cd03290 ABCC_SUR1_N The SUR do 99.8 3.5E-19 7.6E-24 165.1 11.1 159 51-225 18-204 (218)
270 TIGR03269 met_CoM_red_A2 methy 99.8 5.3E-19 1.1E-23 184.3 13.7 162 52-226 302-491 (520)
271 PRK14249 phosphate ABC transpo 99.8 1.2E-18 2.6E-23 164.9 15.0 181 51-250 21-224 (251)
272 cd03252 ABCC_Hemolysin The ABC 99.8 2.5E-19 5.5E-24 168.1 10.1 158 51-226 19-200 (237)
273 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 4.7E-19 1E-23 190.5 13.4 168 52-251 471-663 (686)
274 COG2274 SunT ABC-type bacterio 99.8 5.3E-19 1.2E-23 187.9 13.5 171 52-253 491-688 (709)
275 TIGR03269 met_CoM_red_A2 methy 99.8 7.4E-19 1.6E-23 183.3 14.1 162 52-226 18-232 (520)
276 PRK05291 trmE tRNA modificatio 99.8 2.4E-19 5.2E-24 183.1 10.1 187 62-330 215-403 (449)
277 PRK14263 phosphate ABC transpo 99.8 1.5E-18 3.3E-23 165.3 14.9 164 52-225 26-210 (261)
278 COG4148 ModC ABC-type molybdat 99.8 1.7E-19 3.7E-24 167.5 8.0 149 63-224 25-190 (352)
279 cd03244 ABCC_MRP_domain2 Domai 99.8 3.3E-19 7.2E-24 165.4 10.1 155 51-225 21-200 (221)
280 PRK14261 phosphate ABC transpo 99.8 1.5E-18 3.3E-23 164.5 14.7 179 52-249 24-225 (253)
281 PRK15494 era GTPase Era; Provi 99.8 4E-19 8.6E-24 175.4 11.0 156 64-289 54-217 (339)
282 COG1084 Predicted GTPase [Gene 99.8 2.1E-19 4.6E-24 170.6 8.6 158 63-286 169-334 (346)
283 PRK11174 cysteine/glutathione 99.8 7.6E-19 1.6E-23 185.8 13.9 168 52-251 368-562 (588)
284 cd01881 Obg_like The Obg-like 99.8 2.5E-19 5.5E-24 158.8 8.7 162 67-286 1-175 (176)
285 KOG0927 Predicted transporter 99.8 8.3E-19 1.8E-23 175.4 13.1 195 3-227 325-570 (614)
286 PRK14258 phosphate ABC transpo 99.8 1.6E-18 3.4E-23 165.2 14.6 178 51-247 24-226 (261)
287 PRK14262 phosphate ABC transpo 99.8 6.4E-19 1.4E-23 166.7 11.7 164 52-225 21-207 (250)
288 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 4E-19 8.6E-24 166.8 10.2 171 51-249 20-214 (238)
289 PRK14255 phosphate ABC transpo 99.8 1.8E-18 3.8E-23 163.9 14.8 165 51-225 22-209 (252)
290 PRK11176 lipid transporter ATP 99.8 8.1E-19 1.7E-23 185.3 13.7 172 52-251 361-557 (582)
291 PRK14238 phosphate transporter 99.8 1.3E-18 2.7E-23 166.8 13.8 164 52-225 42-228 (271)
292 PRK11819 putative ABC transpor 99.8 8.5E-19 1.8E-23 184.1 13.7 146 52-226 25-223 (556)
293 PRK14253 phosphate ABC transpo 99.8 1.6E-18 3.4E-23 163.9 14.2 164 51-225 20-206 (249)
294 PRK14265 phosphate ABC transpo 99.8 1.3E-18 2.9E-23 166.9 13.9 176 52-246 38-234 (274)
295 cd03253 ABCC_ATM1_transporter 99.8 4.1E-19 8.9E-24 166.5 10.0 159 51-227 18-200 (236)
296 PRK14243 phosphate transporter 99.8 1.5E-18 3.2E-23 165.7 14.0 177 51-246 27-224 (264)
297 PRK14260 phosphate ABC transpo 99.8 1.5E-18 3.2E-23 165.1 13.8 165 51-225 24-211 (259)
298 PRK14236 phosphate transporter 99.8 2.4E-18 5.2E-23 164.9 15.2 164 52-225 43-229 (272)
299 PRK10790 putative multidrug tr 99.8 9.6E-19 2.1E-23 185.1 13.5 168 52-251 359-553 (592)
300 PRK10636 putative ABC transpor 99.8 5.2E-19 1.1E-23 188.2 11.5 158 52-225 19-208 (638)
301 PRK14264 phosphate ABC transpo 99.8 1.5E-18 3.3E-23 169.0 13.8 164 52-225 63-261 (305)
302 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 8.2E-19 1.8E-23 189.4 13.1 169 52-251 497-690 (710)
303 cd03369 ABCC_NFT1 Domain 2 of 99.8 1.5E-18 3.1E-23 159.7 12.8 151 51-226 25-187 (207)
304 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.2E-18 2.5E-23 167.2 12.2 170 51-251 21-215 (275)
305 cd03230 ABC_DR_subfamily_A Thi 99.8 6.5E-19 1.4E-23 157.6 9.8 127 52-225 18-157 (173)
306 TIGR01187 potA spermidine/putr 99.8 1.5E-18 3.2E-23 170.5 13.2 158 67-250 1-179 (325)
307 PRK14257 phosphate ABC transpo 99.8 2.5E-18 5.5E-23 168.9 14.8 181 52-251 100-303 (329)
308 PRK11160 cysteine/glutathione 99.8 1.5E-18 3.3E-23 182.9 14.0 171 52-251 358-552 (574)
309 PRK14246 phosphate ABC transpo 99.8 2.4E-18 5.2E-23 163.6 14.0 162 52-226 28-215 (257)
310 PRK10982 galactose/methyl gala 99.8 1.6E-18 3.5E-23 179.5 13.9 159 52-226 266-454 (491)
311 COG0396 sufC Cysteine desulfur 99.8 1.9E-18 4.1E-23 156.9 12.5 163 51-227 21-208 (251)
312 PRK15064 ABC transporter ATP-b 99.8 1.3E-18 2.9E-23 181.7 13.4 146 51-225 18-214 (530)
313 PRK13409 putative ATPase RIL; 99.8 1.2E-18 2.5E-23 183.5 12.8 142 52-226 357-517 (590)
314 PRK14266 phosphate ABC transpo 99.8 3.1E-18 6.8E-23 162.0 14.5 164 52-225 21-207 (250)
315 PRK14252 phosphate ABC transpo 99.8 2.6E-18 5.5E-23 164.1 13.9 167 51-225 33-222 (265)
316 PRK13545 tagH teichoic acids e 99.8 2.6E-18 5.7E-23 175.4 14.5 147 52-225 42-205 (549)
317 TIGR02868 CydC thiol reductant 99.8 8.9E-19 1.9E-23 183.0 11.1 150 52-223 353-529 (529)
318 PRK13546 teichoic acids export 99.8 2E-18 4.3E-23 164.7 12.5 147 52-225 42-205 (264)
319 cd03216 ABC_Carb_Monos_I This 99.8 7.9E-19 1.7E-23 155.6 8.6 114 52-225 18-144 (163)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2.6E-18 5.6E-23 180.3 14.0 148 51-226 22-221 (552)
321 TIGR03375 type_I_sec_LssB type 99.8 1.7E-18 3.6E-23 186.5 12.9 168 52-250 483-677 (694)
322 cd03236 ABC_RNaseL_inhibitor_d 99.8 2E-18 4.3E-23 163.9 12.0 158 52-226 19-202 (255)
323 PRK11147 ABC transporter ATPas 99.8 1.9E-18 4.2E-23 184.0 13.2 162 52-230 21-221 (635)
324 cd03246 ABCC_Protease_Secretio 99.8 7.2E-19 1.6E-23 157.3 8.4 126 52-225 20-158 (173)
325 COG4987 CydC ABC-type transpor 99.8 2E-18 4.4E-23 172.9 12.3 169 52-251 356-551 (573)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2.5E-18 5.4E-23 180.5 13.5 146 52-225 340-502 (552)
327 cd03223 ABCD_peroxisomal_ALDP 99.8 1.2E-18 2.7E-23 154.8 9.5 124 51-226 18-151 (166)
328 cd03229 ABC_Class3 This class 99.8 8.9E-19 1.9E-23 157.4 8.6 132 52-225 18-163 (178)
329 TIGR02203 MsbA_lipidA lipid A 99.8 8.3E-19 1.8E-23 184.8 9.9 158 52-227 350-532 (571)
330 PRK11819 putative ABC transpor 99.8 2.4E-18 5.2E-23 180.7 13.0 146 52-225 342-504 (556)
331 COG0370 FeoB Fe2+ transport sy 99.8 1.2E-18 2.5E-23 179.6 10.3 152 63-287 4-163 (653)
332 TIGR01193 bacteriocin_ABC ABC- 99.8 2.2E-18 4.8E-23 185.9 12.9 170 52-249 492-685 (708)
333 COG4172 ABC-type uncharacteriz 99.8 3.5E-18 7.5E-23 165.8 12.6 186 52-261 305-516 (534)
334 cd03215 ABC_Carb_Monos_II This 99.8 3.8E-18 8.1E-23 153.9 11.8 133 51-224 17-165 (182)
335 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.6E-18 3.4E-23 158.8 9.5 137 52-226 18-167 (200)
336 TIGR00958 3a01208 Conjugate Tr 99.8 3.3E-18 7.2E-23 184.5 13.4 169 52-251 499-692 (711)
337 TIGR01257 rim_protein retinal- 99.8 4.1E-18 8.9E-23 196.4 14.5 172 52-250 948-1138(2272)
338 KOG0057 Mitochondrial Fe/S clu 99.8 2.1E-18 4.6E-23 172.9 10.7 157 52-228 370-551 (591)
339 PRK13657 cyclic beta-1,2-gluca 99.8 2.5E-18 5.4E-23 181.9 11.9 167 52-249 353-546 (588)
340 cd03228 ABCC_MRP_Like The MRP 99.8 1.5E-18 3.3E-23 154.9 8.5 129 51-227 19-159 (171)
341 TIGR02857 CydD thiol reductant 99.8 1.8E-18 4E-23 180.6 10.1 157 52-227 340-521 (529)
342 PRK00089 era GTPase Era; Revie 99.8 3.5E-18 7.5E-23 165.4 11.2 155 64-288 7-171 (292)
343 KOG0058 Peptide exporter, ABC 99.8 2.3E-18 4.9E-23 178.1 10.5 180 52-259 486-689 (716)
344 cd04938 TGS_Obg-like TGS_Obg-l 99.8 2.3E-18 4.9E-23 132.3 7.8 69 289-366 1-76 (76)
345 PRK10938 putative molybdenum t 99.8 3.6E-18 7.7E-23 176.9 11.8 159 52-226 278-465 (490)
346 PRK15177 Vi polysaccharide exp 99.8 7.1E-18 1.5E-22 156.0 12.4 147 52-226 5-166 (213)
347 TIGR01192 chvA glucan exporter 99.8 6.9E-18 1.5E-22 178.3 14.0 171 52-251 353-548 (585)
348 PRK10535 macrolide transporter 99.7 4.7E-18 1E-22 181.3 12.4 168 52-232 26-213 (648)
349 cd03247 ABCC_cytochrome_bd The 99.7 1.7E-18 3.7E-23 155.5 7.6 129 52-226 20-160 (178)
350 TIGR01257 rim_protein retinal- 99.7 6.2E-18 1.3E-22 195.0 13.8 173 52-251 1957-2149(2272)
351 COG4778 PhnL ABC-type phosphon 99.7 6.5E-18 1.4E-22 146.6 10.2 167 52-231 29-221 (235)
352 cd03288 ABCC_SUR2 The SUR doma 99.7 9.3E-18 2E-22 159.6 12.3 169 51-248 38-230 (257)
353 TIGR02204 MsbA_rel ABC transpo 99.7 3.6E-18 7.7E-23 180.2 10.2 166 52-248 358-550 (576)
354 COG1132 MdlB ABC-type multidru 99.7 8.7E-18 1.9E-22 177.0 13.0 171 52-253 347-544 (567)
355 PLN03211 ABC transporter G-25; 99.7 1.5E-17 3.2E-22 177.2 14.9 155 52-225 86-268 (659)
356 TIGR01842 type_I_sec_PrtD type 99.7 1.2E-17 2.6E-22 175.1 13.9 170 52-249 336-530 (544)
357 COG1119 ModF ABC-type molybden 99.7 6.4E-18 1.4E-22 155.1 10.1 157 51-224 48-234 (257)
358 COG4586 ABC-type uncharacteriz 99.7 6.8E-18 1.5E-22 156.6 10.3 180 51-260 41-245 (325)
359 cd03232 ABC_PDR_domain2 The pl 99.7 5.4E-18 1.2E-22 154.2 9.5 132 52-224 25-169 (192)
360 TIGR01846 type_I_sec_HlyB type 99.7 1.2E-17 2.5E-22 180.0 13.6 168 52-250 475-669 (694)
361 cd03250 ABCC_MRP_domain1 Domai 99.7 6.5E-18 1.4E-22 155.0 9.8 145 52-227 23-192 (204)
362 PRK10789 putative multidrug tr 99.7 1.5E-17 3.3E-22 175.2 14.0 168 52-250 333-527 (569)
363 PRK10522 multidrug transporter 99.7 9.3E-18 2E-22 176.0 12.1 164 52-248 341-525 (547)
364 TIGR01194 cyc_pep_trnsptr cycl 99.7 7.5E-18 1.6E-22 177.0 11.3 165 52-248 360-546 (555)
365 cd03233 ABC_PDR_domain1 The pl 99.7 7.5E-18 1.6E-22 154.5 9.7 140 52-222 25-178 (202)
366 cd03213 ABCG_EPDR ABCG transpo 99.7 7.6E-18 1.7E-22 153.5 9.7 131 52-224 27-172 (194)
367 COG4107 PhnK ABC-type phosphon 99.7 1.3E-17 2.7E-22 145.3 10.3 162 50-229 22-218 (258)
368 KOG0055 Multidrug/pheromone ex 99.7 9.2E-18 2E-22 182.6 11.2 171 52-253 371-568 (1228)
369 cd03238 ABC_UvrA The excision 99.7 9.5E-18 2.1E-22 150.3 8.8 121 52-225 13-151 (176)
370 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.9E-17 4.2E-22 168.4 12.2 189 62-330 203-396 (442)
371 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.9E-17 4E-22 143.8 10.1 102 52-225 18-129 (144)
372 TIGR00954 3a01203 Peroxysomal 99.7 1.4E-17 3E-22 178.0 11.1 148 52-227 470-643 (659)
373 cd01897 NOG NOG1 is a nucleola 99.7 2.4E-17 5.3E-22 145.4 10.3 159 64-287 2-167 (168)
374 PTZ00265 multidrug resistance 99.7 2.4E-17 5.3E-22 188.5 12.3 177 52-248 1186-1434(1466)
375 PRK13409 putative ATPase RIL; 99.7 1.2E-17 2.5E-22 176.0 8.9 149 61-226 98-274 (590)
376 cd03291 ABCC_CFTR1 The CFTR su 99.7 3.4E-17 7.3E-22 157.6 11.4 145 52-227 55-223 (282)
377 cd03222 ABC_RNaseL_inhibitor T 99.7 4.2E-17 9.1E-22 146.3 10.4 103 54-226 19-135 (177)
378 PLN03232 ABC transporter C fam 99.7 5.7E-17 1.2E-21 186.6 13.3 170 52-251 1254-1448(1495)
379 KOG1423 Ras-like GTPase ERA [C 99.7 6.4E-17 1.4E-21 151.8 10.6 89 63-151 73-167 (379)
380 PLN03073 ABC transporter F fam 99.7 4.9E-17 1.1E-21 174.4 10.5 164 52-225 195-403 (718)
381 COG1134 TagH ABC-type polysacc 99.7 2.4E-16 5.2E-21 144.9 13.4 166 51-251 44-226 (249)
382 TIGR00955 3a01204 The Eye Pigm 99.7 1.7E-16 3.7E-21 168.5 14.0 157 51-224 42-227 (617)
383 PLN03130 ABC transporter C fam 99.7 1.1E-16 2.4E-21 184.7 13.5 170 52-251 1257-1451(1622)
384 COG4133 CcmA ABC-type transpor 99.7 1E-16 2.2E-21 141.4 10.1 154 52-224 20-191 (209)
385 COG4618 ArpD ABC-type protease 99.7 1E-16 2.2E-21 159.6 11.0 166 52-248 354-547 (580)
386 PTZ00243 ABC transporter; Prov 99.7 1.1E-16 2.4E-21 184.4 12.7 170 52-251 1328-1523(1560)
387 TIGR00956 3a01205 Pleiotropic 99.7 2.2E-16 4.8E-21 180.4 14.3 156 52-225 781-964 (1394)
388 cd04164 trmE TrmE (MnmE, ThdF, 99.7 9.3E-17 2E-21 139.2 8.1 154 62-287 1-156 (157)
389 PRK00093 GTP-binding protein D 99.7 1.8E-16 3.9E-21 161.8 11.3 205 62-339 173-419 (435)
390 TIGR03594 GTPase_EngA ribosome 99.7 1.1E-16 2.4E-21 163.0 9.3 155 64-288 1-160 (429)
391 TIGR00957 MRP_assoc_pro multi 99.7 2.7E-16 5.8E-21 181.4 13.5 170 52-251 1304-1498(1522)
392 COG4167 SapF ABC-type antimicr 99.7 6.4E-16 1.4E-20 135.7 12.6 178 52-255 31-233 (267)
393 PRK03003 GTP-binding protein D 99.7 2.5E-16 5.3E-21 162.3 11.4 156 62-287 211-381 (472)
394 cd01879 FeoB Ferrous iron tran 99.7 1.6E-16 3.4E-21 138.4 8.1 148 67-287 1-156 (158)
395 TIGR03594 GTPase_EngA ribosome 99.7 3.2E-16 6.8E-21 159.6 11.5 203 63-338 173-418 (429)
396 cd00267 ABC_ATPase ABC (ATP-bi 99.7 4.4E-16 9.6E-21 136.9 10.7 115 52-227 17-144 (157)
397 cd01894 EngA1 EngA1 subfamily. 99.7 1.6E-16 3.5E-21 137.8 7.4 151 66-286 1-156 (157)
398 PLN03140 ABC transporter G fam 99.7 4.3E-16 9.4E-21 177.8 12.8 156 52-225 898-1081(1470)
399 PRK09554 feoB ferrous iron tra 99.7 2.2E-16 4.8E-21 169.9 9.9 153 63-287 4-167 (772)
400 PRK03003 GTP-binding protein D 99.7 2.3E-16 5E-21 162.5 9.5 155 63-288 39-199 (472)
401 COG4136 ABC-type uncharacteriz 99.7 3.5E-16 7.6E-21 133.3 8.9 157 52-224 20-196 (213)
402 PF00005 ABC_tran: ABC transpo 99.7 1.6E-16 3.6E-21 136.0 7.0 120 52-196 3-137 (137)
403 PTZ00265 multidrug resistance 99.7 2.2E-16 4.8E-21 180.8 10.0 169 52-247 403-654 (1466)
404 COG1101 PhnK ABC-type uncharac 99.6 4E-16 8.6E-21 140.4 9.2 171 52-248 24-225 (263)
405 KOG0410 Predicted GTP binding 99.6 3.1E-17 6.8E-22 154.8 1.6 193 28-288 147-341 (410)
406 TIGR01271 CFTR_protein cystic 99.6 6.1E-16 1.3E-20 178.0 12.2 169 52-251 1237-1430(1490)
407 PRK00093 GTP-binding protein D 99.6 4E-16 8.7E-21 159.2 8.9 154 64-287 3-161 (435)
408 KOG0055 Multidrug/pheromone ex 99.6 8.2E-16 1.8E-20 167.5 11.5 177 52-259 1008-1211(1228)
409 PRK09518 bifunctional cytidyla 99.6 8.3E-16 1.8E-20 165.6 10.7 156 62-287 450-620 (712)
410 TIGR00956 3a01205 Pleiotropic 99.6 1.5E-15 3.2E-20 173.7 12.8 160 51-224 78-271 (1394)
411 cd04171 SelB SelB subfamily. 99.6 1.6E-15 3.5E-20 132.6 10.3 81 64-151 2-86 (164)
412 KOG0066 eIF2-interacting prote 99.6 9.2E-16 2E-20 150.0 9.2 143 53-225 606-763 (807)
413 PRK09518 bifunctional cytidyla 99.6 7.9E-16 1.7E-20 165.8 9.6 155 63-288 276-436 (712)
414 COG4138 BtuD ABC-type cobalami 99.6 1.9E-15 4.2E-20 131.9 9.7 152 52-225 17-194 (248)
415 PF01926 MMR_HSR1: 50S ribosom 99.6 6E-16 1.3E-20 128.9 5.2 88 64-151 1-91 (116)
416 PLN03140 ABC transporter G fam 99.6 4.8E-15 1E-19 169.4 14.0 156 52-224 183-398 (1470)
417 cd04163 Era Era subfamily. Er 99.6 1.9E-15 4.1E-20 131.5 8.4 154 63-286 4-167 (168)
418 cd01895 EngA2 EngA2 subfamily. 99.6 3.5E-15 7.7E-20 131.1 9.9 153 63-285 3-172 (174)
419 KOG0062 ATPase component of AB 99.6 6.2E-15 1.3E-19 147.1 11.2 145 53-227 383-543 (582)
420 KOG0056 Heavy metal exporter H 99.6 4.2E-15 9.1E-20 147.2 9.8 173 52-253 556-753 (790)
421 cd03270 ABC_UvrA_I The excisio 99.6 3.9E-15 8.5E-20 138.9 9.0 67 160-226 118-202 (226)
422 PRK04213 GTP-binding protein; 99.6 5.9E-15 1.3E-19 134.6 9.8 54 62-119 9-62 (201)
423 cd03278 ABC_SMC_barmotin Barmo 99.6 1.3E-15 2.7E-20 139.3 5.0 151 51-227 14-180 (197)
424 TIGR00437 feoB ferrous iron tr 99.6 3.5E-15 7.5E-20 157.1 8.8 147 69-287 1-154 (591)
425 cd04160 Arfrp1 Arfrp1 subfamil 99.6 5.3E-15 1.1E-19 130.3 8.6 150 64-285 1-166 (167)
426 KOG0061 Transporter, ABC super 99.6 1.6E-14 3.5E-19 152.7 13.2 157 52-225 48-232 (613)
427 TIGR00231 small_GTP small GTP- 99.6 1.4E-14 3E-19 124.4 10.0 58 63-120 2-61 (161)
428 cd01861 Rab6 Rab6 subfamily. 99.6 2.6E-14 5.7E-19 124.9 11.5 150 64-286 2-160 (161)
429 TIGR00957 MRP_assoc_pro multi 99.6 2.6E-14 5.6E-19 165.1 13.7 158 52-250 656-839 (1522)
430 KOG0059 Lipid exporter ABCA1 a 99.6 1.7E-14 3.6E-19 158.6 11.7 166 51-232 582-768 (885)
431 TIGR01271 CFTR_protein cystic 99.5 1.2E-14 2.7E-19 167.3 10.5 145 52-227 444-612 (1490)
432 PRK00454 engB GTP-binding prot 99.5 1.7E-14 3.7E-19 130.6 9.1 55 63-120 25-81 (196)
433 COG0218 Predicted GTPase [Gene 99.5 1.2E-14 2.7E-19 130.2 7.7 55 62-119 24-80 (200)
434 cd00879 Sar1 Sar1 subfamily. 99.5 3E-14 6.6E-19 128.5 10.4 80 63-152 20-99 (190)
435 cd00880 Era_like Era (E. coli 99.5 2.2E-14 4.8E-19 123.2 8.2 150 67-286 1-162 (163)
436 PTZ00243 ABC transporter; Prov 99.5 5E-14 1.1E-18 162.6 13.5 157 52-249 678-858 (1560)
437 PLN03130 ABC transporter C fam 99.5 3.8E-14 8.3E-19 163.9 12.1 154 52-250 635-817 (1622)
438 PLN03232 ABC transporter C fam 99.5 3.9E-14 8.5E-19 163.4 11.6 154 52-250 635-817 (1495)
439 cd01889 SelB_euk SelB subfamil 99.5 3.3E-14 7.2E-19 129.0 8.1 147 64-287 2-185 (192)
440 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 6.2E-14 1.3E-18 123.3 9.6 81 64-151 2-85 (168)
441 PRK09866 hypothetical protein; 99.5 6.2E-14 1.4E-18 144.5 10.8 58 28-100 49-107 (741)
442 cd04157 Arl6 Arl6 subfamily. 99.5 6.2E-14 1.4E-18 122.5 9.2 81 64-152 1-81 (162)
443 cd01868 Rab11_like Rab11-like. 99.5 1.5E-13 3.3E-18 120.8 11.7 151 64-287 5-164 (165)
444 TIGR03598 GTPase_YsxC ribosome 99.5 3.1E-14 6.8E-19 127.7 7.1 56 62-120 18-75 (179)
445 smart00178 SAR Sar1p-like memb 99.5 1.3E-13 2.8E-18 124.4 11.1 80 63-152 18-97 (184)
446 cd04142 RRP22 RRP22 subfamily. 99.5 1.6E-13 3.5E-18 125.5 11.8 161 64-287 2-173 (198)
447 cd04155 Arl3 Arl3 subfamily. 99.5 9E-14 2E-18 123.2 9.7 76 63-152 15-94 (173)
448 KOG0062 ATPase component of AB 99.5 4.6E-14 1E-18 140.9 8.5 71 162-232 181-265 (582)
449 PRK15467 ethanolamine utilizat 99.5 5.9E-14 1.3E-18 123.7 7.9 139 64-288 3-147 (158)
450 cd04159 Arl10_like Arl10-like 99.5 1.2E-13 2.6E-18 119.4 9.5 147 65-285 2-158 (159)
451 cd04158 ARD1 ARD1 subfamily. 99.5 1.5E-13 3.2E-18 122.0 10.1 149 64-287 1-160 (169)
452 cd00881 GTP_translation_factor 99.5 9.3E-14 2E-18 124.3 8.8 82 64-152 1-98 (189)
453 cd04151 Arl1 Arl1 subfamily. 99.5 1.5E-13 3.3E-18 120.3 9.6 79 64-152 1-79 (158)
454 cd01876 YihA_EngB The YihA (En 99.5 9.9E-14 2.2E-18 121.0 7.9 53 65-120 2-56 (170)
455 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 3.8E-13 8.2E-18 118.5 11.6 151 64-287 4-163 (166)
456 smart00175 RAB Rab subfamily o 99.5 5.1E-13 1.1E-17 116.9 11.6 151 64-287 2-161 (164)
457 cd01866 Rab2 Rab2 subfamily. 99.5 5.9E-13 1.3E-17 117.9 11.7 151 64-287 6-165 (168)
458 cd04145 M_R_Ras_like M-Ras/R-R 99.5 5.6E-13 1.2E-17 116.7 11.3 152 63-287 3-163 (164)
459 cd01862 Rab7 Rab7 subfamily. 99.5 6.8E-13 1.5E-17 117.1 11.9 155 64-287 2-166 (172)
460 cd04112 Rab26 Rab26 subfamily. 99.5 4.4E-13 9.6E-18 121.5 10.9 152 64-288 2-163 (191)
461 KOG0927 Predicted transporter 99.5 1.4E-13 3.1E-18 138.2 8.2 170 52-234 93-291 (614)
462 cd04154 Arl2 Arl2 subfamily. 99.4 2.9E-13 6.3E-18 120.4 9.3 147 63-284 15-171 (173)
463 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 3.4E-13 7.4E-18 120.3 9.8 80 63-152 16-95 (174)
464 cd04166 CysN_ATPS CysN_ATPS su 99.4 8.3E-14 1.8E-18 128.3 5.7 82 64-152 1-113 (208)
465 cd01864 Rab19 Rab19 subfamily. 99.4 7.8E-13 1.7E-17 116.5 11.4 151 63-286 4-164 (165)
466 cd00154 Rab Rab family. Rab G 99.4 6.2E-13 1.3E-17 114.7 10.5 148 64-284 2-158 (159)
467 cd01865 Rab3 Rab3 subfamily. 99.4 9.5E-13 2.1E-17 116.1 11.8 151 64-287 3-162 (165)
468 cd01867 Rab8_Rab10_Rab13_like 99.4 8.6E-13 1.9E-17 116.6 11.6 152 63-287 4-164 (167)
469 cd01863 Rab18 Rab18 subfamily. 99.4 1.2E-12 2.6E-17 114.5 12.4 151 64-286 2-160 (161)
470 KOG0054 Multidrug resistance-a 99.4 5.6E-13 1.2E-17 148.5 12.6 163 52-259 539-729 (1381)
471 cd04119 RJL RJL (RabJ-Like) su 99.4 8.7E-13 1.9E-17 115.6 11.4 156 64-287 2-166 (168)
472 cd03271 ABC_UvrA_II The excisi 99.4 5.3E-13 1.2E-17 126.8 10.2 71 157-227 147-236 (261)
473 cd04109 Rab28 Rab28 subfamily. 99.4 1.2E-12 2.6E-17 121.1 12.3 155 64-288 2-166 (215)
474 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 2.3E-13 5E-18 124.0 7.3 59 64-122 2-62 (196)
475 cd00876 Ras Ras family. The R 99.4 6.5E-13 1.4E-17 115.4 9.7 150 64-286 1-159 (160)
476 cd04138 H_N_K_Ras_like H-Ras/N 99.4 1.4E-12 3E-17 113.6 11.7 151 64-287 3-161 (162)
477 PF00009 GTP_EFTU: Elongation 99.4 5.4E-13 1.2E-17 120.8 8.8 148 63-287 4-186 (188)
478 cd04114 Rab30 Rab30 subfamily. 99.4 1.9E-12 4.1E-17 114.1 11.9 151 63-286 8-167 (169)
479 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 9.6E-13 2.1E-17 118.5 10.1 152 63-287 4-169 (183)
480 cd01892 Miro2 Miro2 subfamily. 99.4 1.7E-12 3.8E-17 115.3 11.6 150 63-287 5-165 (169)
481 cd04149 Arf6 Arf6 subfamily. 99.4 9.5E-13 2.1E-17 117.0 9.7 80 63-152 10-89 (168)
482 cd04136 Rap_like Rap-like subf 99.4 2E-12 4.2E-17 113.1 11.4 152 63-287 2-162 (163)
483 KOG0054 Multidrug resistance-a 99.4 9.7E-13 2.1E-17 146.7 11.5 181 52-262 1158-1363(1381)
484 KOG0065 Pleiotropic drug resis 99.4 1.9E-12 4.1E-17 141.8 13.4 158 52-227 809-994 (1391)
485 cd00878 Arf_Arl Arf (ADP-ribos 99.4 1.2E-12 2.7E-17 114.1 9.9 146 64-284 1-156 (158)
486 COG1245 Predicted ATPase, RNas 99.4 9.7E-13 2.1E-17 129.9 10.0 139 62-229 367-522 (591)
487 cd01669 TGS_Ygr210_C TGS_Ygr21 99.4 5.6E-13 1.2E-17 102.3 6.5 57 302-366 20-76 (76)
488 cd04124 RabL2 RabL2 subfamily. 99.4 3.4E-12 7.3E-17 112.3 12.1 150 64-287 2-157 (161)
489 cd04156 ARLTS1 ARLTS1 subfamil 99.4 1E-12 2.2E-17 114.8 8.8 79 64-152 1-80 (160)
490 cd01888 eIF2_gamma eIF2-gamma 99.4 8.8E-13 1.9E-17 121.0 8.6 49 239-287 138-198 (203)
491 cd04139 RalA_RalB RalA/RalB su 99.4 2.6E-12 5.5E-17 112.3 11.1 151 64-287 2-161 (164)
492 cd04106 Rab23_lke Rab23-like s 99.4 2.5E-12 5.4E-17 112.5 11.1 148 64-285 2-160 (162)
493 cd01890 LepA LepA subfamily. 99.4 1.3E-12 2.7E-17 116.5 9.3 147 64-287 2-176 (179)
494 cd03273 ABC_SMC2_euk Eukaryoti 99.4 2E-13 4.2E-18 129.4 4.3 74 157-230 125-236 (251)
495 smart00173 RAS Ras subfamily o 99.4 2.4E-12 5.2E-17 112.9 10.8 151 64-287 2-161 (164)
496 TIGR02528 EutP ethanolamine ut 99.4 5.5E-13 1.2E-17 114.5 6.5 74 64-152 2-75 (142)
497 cd04150 Arf1_5_like Arf1-Arf5- 99.4 1.6E-12 3.4E-17 114.4 9.5 79 64-152 2-80 (159)
498 smart00177 ARF ARF-like small 99.4 2.5E-12 5.3E-17 115.0 10.4 150 63-287 14-173 (175)
499 cd04144 Ras2 Ras2 subfamily. 99.4 2.5E-12 5.4E-17 116.5 10.4 154 64-288 1-163 (190)
500 cd04175 Rap1 Rap1 subgroup. T 99.4 2.9E-12 6.3E-17 112.6 10.6 151 64-287 3-162 (164)
No 1
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.2e-90 Score=650.13 Aligned_cols=364 Identities=57% Similarity=0.947 Sum_probs=352.3
Q ss_pred CCHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCcceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 015822 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLT 80 (399)
Q Consensus 1 ~~~~~~i~~le~~i~~~~~~k~t~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~g~~valvG~~gaGKSTLln 80 (399)
||+||||+++|+||+++||||+|++|+++||++||+|++|++.+.++.++++.+|+|.++|+.+|+|||+|++|||||||
T Consensus 2 ~tieEkIk~iEeeia~tpknKaTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~ 81 (365)
T COG1163 2 MTIEEKIKAIEEEIARTPKNKATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLN 81 (365)
T ss_pred CCHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHH
Confidence 89999999999999999999999999999999999999999887444444458999999999999999999999999999
Q ss_pred HHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHH
Q 015822 81 LLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILT 160 (399)
Q Consensus 81 ~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~ 160 (399)
+||+..+.+++|||||+.|.+|++.++|.+||++|+||++++++.|.|++.|.++.+++||+|++++|+..+....+.++
T Consensus 82 ~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~ 161 (365)
T COG1163 82 KLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIE 161 (365)
T ss_pred HHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777788999
Q ss_pred HHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhcccccc
Q 015822 161 KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240 (399)
Q Consensus 161 ~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p 240 (399)
.+|+..||++++.++.+....+.+.+|.+....|+.++|++.++.+|++|++.+|.+++..|.++|+++|.+.+++.|+|
T Consensus 162 ~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p 241 (365)
T COG1163 162 RELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKP 241 (365)
T ss_pred HHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCChhhHHHHHcCCCEEEecchhccchHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecCCCCCCHHH
Q 015822 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVED 320 (399)
Q Consensus 241 ~iiv~NK~Dl~~~~~~~~l~~~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~r~g~tv~~ 320 (399)
+|+|+||+|+++.++++.+.+.++++++||+.++|+++|++.||+.|+++||||+++|..||+++|+++++ |+||.|
T Consensus 242 ~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~---GsTV~D 318 (365)
T COG1163 242 ALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRR---GSTVGD 318 (365)
T ss_pred eEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeC---CCcHHH
Confidence 99999999999988899998888999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCeEEEEec
Q 015822 321 FCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKK 367 (399)
Q Consensus 321 ~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dvv~i~~~ 367 (399)
+|.+||++|.++|+||+|||+|+||+|||||.||+|+|||||+||.+
T Consensus 319 vc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~k 365 (365)
T COG1163 319 VCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIHAK 365 (365)
T ss_pred HHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEeeC
Confidence 99999999999999999999999999999999999999999999975
No 2
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-79 Score=554.80 Aligned_cols=364 Identities=78% Similarity=1.220 Sum_probs=356.3
Q ss_pred CCHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCcceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 015822 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLT 80 (399)
Q Consensus 1 ~~~~~~i~~le~~i~~~~~~k~t~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~g~~valvG~~gaGKSTLln 80 (399)
|+|.|||+++|++|+|++|||+||.|++.|+++|++++.++.++..+.++++.+|++.++|+.+|++||.|.+||||||.
T Consensus 1 MGIlekI~eIE~EmaRTQKNKaTEyHLGlLKaKlAkyR~qLlep~~~s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs 80 (364)
T KOG1486|consen 1 MGILEKIKEIEAEMARTQKNKATEYHLGLLKAKLAKYRQQLLEPTKGSSGKGEGFEVLKSGDARVALIGFPSVGKSTLLS 80 (364)
T ss_pred CcHHHHHHHHHHHHHHhhhccchhHhHHHHHHHHHHHHHHhCCCCCCCCCCCCCeeeeccCCeEEEEecCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999888887777899999999999999999999999999999
Q ss_pred HHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHH
Q 015822 81 LLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILT 160 (399)
Q Consensus 81 ~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~ 160 (399)
.||...+..++|.|||+.+++|.+.++|..|+++|.||+++++++|.|+++|..+..+.+|+++.|+|+...+.+.+.++
T Consensus 81 ~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le 160 (364)
T KOG1486|consen 81 KITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREILE 160 (364)
T ss_pred HhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred HHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhcccccc
Q 015822 161 KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240 (399)
Q Consensus 161 ~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p 240 (399)
.+|+.+||++++++++++..++...++.+-...|+++.|+..+..+|.+|++.++.+++..|.+.|+++|.+.+++.|.+
T Consensus 161 ~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ 240 (364)
T KOG1486|consen 161 KELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIK 240 (364)
T ss_pred HHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCChhhHHHHHcCCCEEEecchhccchHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecCCCCCCHHH
Q 015822 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVED 320 (399)
Q Consensus 241 ~iiv~NK~Dl~~~~~~~~l~~~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~r~g~tv~~ 320 (399)
|++|.||+|.++.++++++.+.|+.+.+||...+|++.|++.||+.|++.|+|||++|..||+++|+++++ |+|+++
T Consensus 241 ClYvYnKID~vs~eevdrlAr~PnsvViSC~m~lnld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~---g~tve~ 317 (364)
T KOG1486|consen 241 CLYVYNKIDQVSIEEVDRLARQPNSVVISCNMKLNLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRK---GSTVED 317 (364)
T ss_pred EEEEeeccceecHHHHHHHhcCCCcEEEEeccccCHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeC---CCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCeEEEEec
Q 015822 321 FCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKK 367 (399)
Q Consensus 321 ~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dvv~i~~~ 367 (399)
+|..||++|...|+||+|||.|+||+|||||..|.++|+|||+|+.+
T Consensus 318 ~C~~iHr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~k 364 (364)
T KOG1486|consen 318 VCHRIHRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVKK 364 (364)
T ss_pred HHHHHHHHHHHhhceeeEeccccccCcceeccccccccccceeeecC
Confidence 99999999999999999999999999999999999999999999864
No 3
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-66 Score=473.28 Aligned_cols=357 Identities=60% Similarity=0.988 Sum_probs=339.5
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCcceEEEEeCCeEEEEEcCCCCcHHHHHHHH
Q 015822 3 IIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLL 82 (399)
Q Consensus 3 ~~~~i~~le~~i~~~~~~k~t~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~g~~valvG~~gaGKSTLln~L 82 (399)
+-+||+++|++|++++|||+|+.+++.++++++|+++++... ..++++-+|+|.+.+..+++++|+|.+|||||+.-|
T Consensus 2 ~~~ki~~ie~emaktqKNkat~~hlgllkaklaKlrreli~~--g~~g~~~gfDV~ktg~a~vg~vgFPSvGksTl~~~l 79 (358)
T KOG1487|consen 2 TLEKIKEIEDEMARTQKNKATSFHLGLLKAKLAKLRRELITG--GGGGGGGGFDVAKTGDARVGFVGFPSVGKSTLLSKL 79 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhhccC--CCCCCCCCccceeecceeeeEEecCccchhhhhhhh
Confidence 568999999999999999999999999999999999997762 333344499999998889999999999999999999
Q ss_pred hCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHH
Q 015822 83 TGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKE 162 (399)
Q Consensus 83 ~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~ 162 (399)
+|..++|+.|.|||+...+|.+.++|..+++.|.||+++++..|.|++.|.+...+.|.+|+.++|+..|......++.+
T Consensus 80 ~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ie~e 159 (358)
T KOG1487|consen 80 TGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKIIEKE 159 (358)
T ss_pred cCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEE
Q 015822 163 LEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCV 242 (399)
Q Consensus 163 L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~i 242 (399)
|+-|||++++.|+++-...+++.+|.+.. ++||.+.++.++.+++..++.+..+.|.+.|++++.+++++.|.|++
T Consensus 160 leg~girlnk~pp~i~~kkKdkgGInlt~----~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~i 235 (358)
T KOG1487|consen 160 LEGFGIRLNKQPPNIGTKKKDKGGINLTG----THLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCI 235 (358)
T ss_pred hhcceeeccCCCCCccccccccCceeeec----chhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeeeee
Confidence 99999999999999999999999999877 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHHcCCCEEEecchhccchHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecCCCCCCHHHHH
Q 015822 243 YVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFC 322 (399)
Q Consensus 243 iv~NK~Dl~~~~~~~~l~~~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~r~g~tv~~~a 322 (399)
+++||+|-.+-++++-+...+..+|+||.+++++|+|++.+|+.|++.|+||++.|..||+..|.+++. ...+++|+|
T Consensus 236 yvLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~--~~~sv~dfc 313 (358)
T KOG1487|consen 236 YVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSS--ERRSVEDFC 313 (358)
T ss_pred eeecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcchheEEecCCCCCCCCCCCCceecC--CcccHHHHH
Confidence 999999999988888888888999999999999999999999999999999999999999999999988 478999999
Q ss_pred HHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCeEEEEec
Q 015822 323 NHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKK 367 (399)
Q Consensus 323 ~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dvv~i~~~ 367 (399)
..||+++.+.|+||.|||.|+||+|||||++|+|+|+|||+||.+
T Consensus 314 ~~ih~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~dedvv~ivkk 358 (358)
T KOG1487|consen 314 NKIHKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDEDVVQIVKK 358 (358)
T ss_pred HHHHHHHHHhhhhheEeccccCcChhhcchhheeccchhhhhccC
Confidence 999999999999999999999999999999999999999999864
No 4
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=3.4e-43 Score=347.85 Aligned_cols=289 Identities=20% Similarity=0.259 Sum_probs=218.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC-----------------EeecccCccccccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 124 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-----------------~~i~~iD~~Gl~~~~~ 124 (399)
+.+|||||.||||||||||+|++..+.+++|||||++|+.|.+.+.+ .++.++|+||+..+++
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 56999999999999999999999999999999999999999998863 3589999999999888
Q ss_pred cCcccchhhccccCChhhhHHHHhcC------------CcHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCceeee
Q 015822 125 EGKGRGRQVIAVSKSSDIVLMVLDAS------------KSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNS 191 (399)
Q Consensus 125 ~~~~~~~q~~~~~~~~d~il~v~d~~------------~~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~iali~ 191 (399)
.+.+++++++..++++|++++|+|++ +|.++.+.+..+|..+++ .+.+++..++-..+ ...+
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~-~~~~---- 175 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRK-KKKK---- 175 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc-cccc----
Confidence 88889999999999999999999975 356678888999988887 46666555442110 0000
Q ss_pred ccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHh-hccccccEEEEEecC--CC-C-ChhhHHHHHc-----
Q 015822 192 TLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIE-GNRKYMKCVYVYNKI--DV-I-GIDDVDKLAR----- 261 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~-~~~~~~p~iiv~NK~--Dl-~-~~~~~~~l~~----- 261 (399)
++...-....+..+.+.|.. + ...-..+|+.++....-. .....||+++|+|+. |+ . +.+.++.+.+
T Consensus 176 -~~~~~~~~~~l~~v~~~L~~-~-~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~ 252 (390)
T PTZ00258 176 -KKEEKVELDVLKKVLEWLEE-G-KPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEK 252 (390)
T ss_pred -hhhHHHHHHHHHHHHHHHHc-C-CccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHhc
Confidence 00000000112222222221 1 111123677666433222 135579999999999 86 2 3333444432
Q ss_pred -CCCEEEecchhcc-----------------------chHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecCCCCCC
Q 015822 262 -QPNSVVISCNLKL-----------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCT 317 (399)
Q Consensus 262 -~~~~i~vSa~~~~-----------------------gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~r~g~t 317 (399)
...++++||+.+. |++.|.+..++.|++|++||.+ |+..++|++++ |+|
T Consensus 253 ~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g----~~e~raw~i~~---Gst 325 (390)
T PTZ00258 253 GGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAG----PDEVRCWTIQK---GTK 325 (390)
T ss_pred CCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCC----CCceeEEEeCC---CCc
Confidence 2348999998775 7889999999999999999986 47789999999 999
Q ss_pred HHHHHHHHHHHHhhccceeEEeccC----------CccCC--cccCCCceecCCCeEEEE
Q 015822 318 VEDFCNHIHRSLVKDVKYVLVWGTS----------ARHYP--QHCGLGHVLQDEDVVQIV 365 (399)
Q Consensus 318 v~~~a~~ih~~l~~~f~~a~~wg~s----------~~~~~--~rvg~~~~l~d~dvv~i~ 365 (399)
+.++|+.||+||+++|.||.||+.+ +|..| +++|+||+|+|||||+|-
T Consensus 326 a~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~ 385 (390)
T PTZ00258 326 APQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFK 385 (390)
T ss_pred HHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEE
Confidence 9999999999999999999999977 67767 999999999999999984
No 5
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=1.5e-42 Score=346.62 Aligned_cols=291 Identities=24% Similarity=0.348 Sum_probs=227.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEE---------------------C---CEeecccCcccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------N---DTKIQLLDLPGI 119 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~---------------------~---g~~i~~iD~~Gl 119 (399)
+|+|||.||||||||||+||+....+++|||||++|+.|.+.+ + ..+++++|+||+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl 82 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGL 82 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCc
Confidence 7999999999999999999999988999999999999998763 2 267899999999
Q ss_pred ccccccCcccchhhccccCChhhhHHHHhcCC---------------cHHHHHHHHHHHHHcCC-cccccccccchhhHh
Q 015822 120 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASK---------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKK 183 (399)
Q Consensus 120 ~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~---------------~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kq 183 (399)
.++++.+.|++++++..++++|++++|+|++. +..+.+.+..+|..+.+ .+.+++..+.- +..
T Consensus 83 ~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~-~~~ 161 (396)
T PRK09602 83 VPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSR-KAQ 161 (396)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHh
Confidence 99998888999999999999999999999872 45678889999988755 45566555532 111
Q ss_pred hcC--ceeeeccCCC--CCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhc-cccccEEEEEecCCCCC-hhhHH
Q 015822 184 TGG--ISFNSTLPLT--HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGN-RKYMKCVYVYNKIDVIG-IDDVD 257 (399)
Q Consensus 184 r~~--iali~DEpts--~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~-~~~~p~iiv~NK~Dl~~-~~~~~ 257 (399)
+.. +...+-+.++ +++...+.++|++.+.+ +. .-+|+.+++.+..... ...+|+++|+||+|... ...+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~-~~---~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~ 237 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLP-ED---PSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIE 237 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCc-Cc---ccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHH
Confidence 211 1111112233 67778888888877644 11 2357777765555443 33599999999999863 33344
Q ss_pred HHHcC--CCEEEecchhccchHH------------------------------------------------HHHHHHHHh
Q 015822 258 KLARQ--PNSVVISCNLKLNLDR------------------------------------------------LLARMWEEM 287 (399)
Q Consensus 258 ~l~~~--~~~i~vSa~~~~gl~~------------------------------------------------L~~~i~~~l 287 (399)
.+.++ ..++++||..|.+++. +..++|+.|
T Consensus 238 ~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~~~~~~~i~~~~~~~L 317 (396)
T PRK09602 238 RLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGGTGVQEAINTAVFDLL 317 (396)
T ss_pred HHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 44433 5689999999998755 337889999
Q ss_pred CceEEEeCCCCCC------CCCCCcEEeecCCCCCCHHHHHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCe
Q 015822 288 GLVRVYTKPQGQQ------PDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDV 361 (399)
Q Consensus 288 ~~i~~~~~~~~~~------p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dv 361 (399)
+++++||.++... +++.+||++++ |+|+.|+|+.||+||.++|+||..|+ .+|++|+||+|+||||
T Consensus 318 ~li~~yt~~~~~~~~~~~g~~~~~~~~l~~---g~t~~d~A~~IH~d~~~~fi~A~~~~-----~~~~~g~~~~l~dgDi 389 (396)
T PRK09602 318 DMIVVYPVEDENKLTDKKGNVLPDAFLLPK---GSTARDLAYKIHTDIGEGFLYAIDAR-----TKRRIGEDYELKDGDV 389 (396)
T ss_pred CCEEEEecCcccccccccCcccceeEEECC---CCCHHHHHHHHHHHHHhhceehhccc-----CCcccCCCcEecCCCE
Confidence 9999999754222 37888999999 99999999999999999999999854 6899999999999999
Q ss_pred EEEEec
Q 015822 362 VQIVKK 367 (399)
Q Consensus 362 v~i~~~ 367 (399)
|+|++.
T Consensus 390 v~i~~~ 395 (396)
T PRK09602 390 IKIVST 395 (396)
T ss_pred EEEEeC
Confidence 999974
No 6
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=4.4e-39 Score=315.16 Aligned_cols=285 Identities=25% Similarity=0.356 Sum_probs=211.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE-----------------eecccCcccccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGASE 125 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-----------------~i~~iD~~Gl~~~~~~ 125 (399)
.+|||||.||||||||||+|++..+.+++|||||++|+.|.+.+.+. ++.++|+||+.++++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 58999999999999999999999999999999999999999998762 5899999999998888
Q ss_pred CcccchhhccccCChhhhHHHHhcC------------CcHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCceeeec
Q 015822 126 GKGRGRQVIAVSKSSDIVLMVLDAS------------KSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNST 192 (399)
Q Consensus 126 ~~~~~~q~~~~~~~~d~il~v~d~~------------~~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~iali~D 192 (399)
+.+++++++..++++|++++|+|++ +|..+.+.+..+|..+.+ .+.+++..++-..+. ..-.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~-~~~~---- 157 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKG-GDKE---- 157 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-cchh----
Confidence 8889999999999999999999985 256677788888888877 556666555422111 0000
Q ss_pred cCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhh--ccccccEEEEEecCCC--C-ChhhHHHHHc-----C
Q 015822 193 LPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDV--I-GIDDVDKLAR-----Q 262 (399)
Q Consensus 193 Epts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~--~~~~~p~iiv~NK~Dl--~-~~~~~~~l~~-----~ 262 (399)
..-..+.+..+.+.|.. +-. +-..+|+.++. ..+.. ....||+++|+|+.|. . ..+.++.+.+ .
T Consensus 158 ---~~~e~~~l~~v~~~Le~-~~~-~~~~~~~~~e~-~~l~~~~llt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~ 231 (364)
T PRK09601 158 ---AKAELELLEKLLEHLEE-GKP-ARTLELTDEEE-KLLKSLQLLTAKPVLYVANVDEDDLADGNPYVKKVREIAAKEG 231 (364)
T ss_pred ---HHHHHHHHHHHHHHHHc-CCC-cccCCCCHHHH-HHHHHhcccccCCeEEEEECCccccccccHHHHHHHHHHHHcC
Confidence 00000112222222221 111 12357887775 33332 3456999999999985 2 2333444433 2
Q ss_pred CCEEEecchhcc----------------------chHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecCCCCCCHHH
Q 015822 263 PNSVVISCNLKL----------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVED 320 (399)
Q Consensus 263 ~~~i~vSa~~~~----------------------gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~r~g~tv~~ 320 (399)
..++++||..+. |++.++...++.|++|.+||.+ ++..++|++++ |+|+.+
T Consensus 232 ~~~i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg----~~evrawti~~---GstA~~ 304 (364)
T PRK09601 232 AEVVVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAG----PKEVRAWTIKK---GTTAPQ 304 (364)
T ss_pred CeEEEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCC----CCeEEEEEeCC---CCchHH
Confidence 348999986554 4466778889999999999986 45668999999 999999
Q ss_pred HHHHHHHHHhhccceeEEecc----------CCccCC-ccc-CCCceecCCCeEEEE
Q 015822 321 FCNHIHRSLVKDVKYVLVWGT----------SARHYP-QHC-GLGHVLQDEDVVQIV 365 (399)
Q Consensus 321 ~a~~ih~~l~~~f~~a~~wg~----------s~~~~~-~rv-g~~~~l~d~dvv~i~ 365 (399)
+|..||+||+++|.+|.|+.. .+|..| +|+ |+||+|+|||||+|-
T Consensus 305 aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~ 361 (364)
T PRK09601 305 AAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFR 361 (364)
T ss_pred HhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEE
Confidence 999999999999999997753 255444 566 999999999999973
No 7
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=100.00 E-value=1.9e-38 Score=297.14 Aligned_cols=232 Identities=70% Similarity=1.136 Sum_probs=216.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
+|+|+|+||||||||||+|+|....+++|||||++|.+|.+.++|.+++++|+||+.+....+.++..+.+..++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 79999999999999999999998889999999999999999999999999999999876666666777888889999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCC
Q 015822 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (399)
Q Consensus 144 l~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~ 223 (399)
++|+|++.+..+.+.+.++|+.+|+.++++++.++...+.++++.+....++.++|.+.++.+|+++++.++.+.+.++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999988777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHcCCCEEEecchhccchHHHHHHHHHHhCceEEEeC
Q 015822 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTK 295 (399)
Q Consensus 224 ~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~~ 295 (399)
++++++|.+.+++.|+|+++|+||+|+.+.++...+...++++++||+++.|+++|.+.+++.|++||||||
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHhCcEEEecC
Confidence 999999999999999999999999999887777666666778999999999999999999999999999996
No 8
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-38 Score=305.57 Aligned_cols=284 Identities=23% Similarity=0.301 Sum_probs=212.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC------------------EeecccCccccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND------------------TKIQLLDLPGIIEGAS 124 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g------------------~~i~~iD~~Gl~~~~~ 124 (399)
..+||||.||+|||||||+||...+.++||||||++|+.|.+.+.+ .+++++|.+||+++++
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 4799999999999999999999998899999999999999987643 4688999999999999
Q ss_pred cCcccchhhccccCChhhhHHHHhcCC------------cHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCceeee
Q 015822 125 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNS 191 (399)
Q Consensus 125 ~~~~~~~q~~~~~~~~d~il~v~d~~~------------~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~iali~ 191 (399)
.|.|+++||++.+|++|+|++|++++. |..+.+.+..+|..+.+ .+.+.+.+++..-+...
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~------ 156 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGK------ 156 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 999999999999999999999999874 56788899999988877 67777766653322110
Q ss_pred ccCCCCCCHHHHHHHHHHhh-----hCC--cEE-EEcCCCCHHHHHHHHhh-ccccccEEEEEecCCCCChh---hHHHH
Q 015822 192 TLPLTHVDEKLCYQILHEYK-----IHN--AEV-LFREDATVDDLIDVIEG-NRKYMKCVYVYNKIDVIGID---DVDKL 259 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l~-----~~~--~~v-~vthd~~~~~~~~~i~~-~~~~~p~iiv~NK~Dl~~~~---~~~~l 259 (399)
.+|. ...+.+..+. +.. ... +-.+.|+.+++...... ....||+++|+||.|....+ .++.+
T Consensus 157 -----~~~k-~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i 230 (372)
T COG0012 157 -----KLDK-ELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRL 230 (372)
T ss_pred -----chHH-HHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHH
Confidence 0111 1111111111 111 111 12345777765443322 34569999999999977432 25555
Q ss_pred HcC-----CCEEEecchhccc-----------------------hHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeec
Q 015822 260 ARQ-----PNSVVISCNLKLN-----------------------LDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSV 311 (399)
Q Consensus 260 ~~~-----~~~i~vSa~~~~g-----------------------l~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~ 311 (399)
.++ ..+||+||..+.. |+++..+-|..|+++.+||.. |++.++|.+.+
T Consensus 231 ~~~~~~~~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g----~~evrawti~~ 306 (372)
T COG0012 231 KELAAKENAEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAG----VKEVRAWTIKD 306 (372)
T ss_pred HHHhhhcCCcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhc----CCeEEEEEecc
Confidence 432 3599999987753 344555667888899989886 36778999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhccceeEEeccC----------CccCCcc--cCCCceecCCCeE--EEE
Q 015822 312 DRGGCTVEDFCNHIHRSLVKDVKYVLVWGTS----------ARHYPQH--CGLGHVLQDEDVV--QIV 365 (399)
Q Consensus 312 ~r~g~tv~~~a~~ih~~l~~~f~~a~~wg~s----------~~~~~~r--vg~~~~l~d~dvv--~i~ 365 (399)
|++..++|..||+|+...|..|-+.... ++-.|.+ +|+||+|+||||+ +|+
T Consensus 307 ---g~kap~aaG~Ih~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~Fk~~ 371 (372)
T COG0012 307 ---GSKAPDAAGVIHPDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHFKFN 371 (372)
T ss_pred ---CCcccccCCccccchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEEEec
Confidence 9999999999999999999999764222 4455555 9999999999999 554
No 9
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=8.1e-34 Score=268.02 Aligned_cols=286 Identities=20% Similarity=0.283 Sum_probs=213.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC-----------------EeecccCccccccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 124 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-----------------~~i~~iD~~Gl~~~~~ 124 (399)
...+||||.||+|||||||+||.....++||||||+||+.+.+.+.+ .+++++|++|+.++++
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 45899999999999999999999998899999999999999986643 4688999999999999
Q ss_pred cCcccchhhccccCChhhhHHHHhcCC------------cHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCceeee
Q 015822 125 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNS 191 (399)
Q Consensus 125 ~~~~~~~q~~~~~~~~d~il~v~d~~~------------~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~iali~ 191 (399)
.|.|+++.|++.++.+|.|++|++++. |..+.+.+.++|....+ .+.+++..++-..+....
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~~~----- 174 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRTKS----- 174 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccC-----
Confidence 999999999999999999999988764 56788888888887766 566666665543332111
Q ss_pred ccCCCCCCHH-------HHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhh-ccccccEEEEEecCCCCCh----hhHHHH
Q 015822 192 TLPLTHVDEK-------LCYQILHEYKIHNAEVLFREDATVDDLIDVIEG-NRKYMKCVYVYNKIDVIGI----DDVDKL 259 (399)
Q Consensus 192 DEpts~LD~~-------~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~-~~~~~p~iiv~NK~Dl~~~----~~~~~l 259 (399)
++|.. .+..+.+.+--....+...|+|+.+++.-.... ....+|+++++|++|-.-. ..+..+
T Consensus 175 -----~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~knk~l~~i 249 (391)
T KOG1491|consen 175 -----NLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARKKNKKLPKI 249 (391)
T ss_pred -----cHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcchhhhHHHHHHhhh
Confidence 11111 122222222112234455689998875433322 3446999999999976522 123333
Q ss_pred HcC-------CCEEEecchhcc---------------------chHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeec
Q 015822 260 ARQ-------PNSVVISCNLKL---------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSV 311 (399)
Q Consensus 260 ~~~-------~~~i~vSa~~~~---------------------gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~ 311 (399)
.++ ..+++.|+..+. .|++++...++.|+++.+||.+ |+....|.+++
T Consensus 250 ~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~~L~li~fFt~G----~~eV~~WtIr~ 325 (391)
T KOG1491|consen 250 KEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYSALNLIVFFTCG----EDEVRAWTIRK 325 (391)
T ss_pred hhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHHhhCceEEEeeC----Cchheeeehhh
Confidence 322 227788886654 3456677889999999999997 56778999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhccceeEEeccC----------CccCC--cccCCCceecCCCeEEE
Q 015822 312 DRGGCTVEDFCNHIHRSLVKDVKYVLVWGTS----------ARHYP--QHCGLGHVLQDEDVVQI 364 (399)
Q Consensus 312 ~r~g~tv~~~a~~ih~~l~~~f~~a~~wg~s----------~~~~~--~rvg~~~~l~d~dvv~i 364 (399)
|+++.++|..||+|+.++|..|-+.-.. ++..| +++|++|+++||||+-+
T Consensus 326 ---gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~F 387 (391)
T KOG1491|consen 326 ---GTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFF 387 (391)
T ss_pred ---ccccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEEE
Confidence 9999999999999999999999775332 22233 79999999999999875
No 10
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.98 E-value=2.7e-32 Score=267.41 Aligned_cols=281 Identities=21% Similarity=0.245 Sum_probs=199.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECC-----------------EeecccCccccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 124 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g-----------------~~i~~iD~~Gl~~~~~ 124 (399)
..+||||.||+|||||||+||+..+ ++++|||||++|+.|++.+.+ ..+.++|.||++++++
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 4789999999999999999999998 999999999999999999877 3678999999999999
Q ss_pred cCcccchhhccccCChhhhHHHHhcCC------------cHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCceeee
Q 015822 125 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNS 191 (399)
Q Consensus 125 ~~~~~~~q~~~~~~~~d~il~v~d~~~------------~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~iali~ 191 (399)
.|.|++++++..++++|++++|++++. +..+.+.+..+|....+ .+.++...+.-..+..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~~------- 155 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGG------- 155 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc-------
Confidence 999999999999999999999998763 44566777777777665 3444443333211100
Q ss_pred ccCCCCCCHHHHHHHHHHhh--hCCcEEEEcCCCCHHHHHHHHhh--ccccccEEEEEecCCCC-C-h-hh----HHHHH
Q 015822 192 TLPLTHVDEKLCYQILHEYK--IHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDVI-G-I-DD----VDKLA 260 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l~--~~~~~v~vthd~~~~~~~~~i~~--~~~~~p~iiv~NK~Dl~-~-~-~~----~~~l~ 260 (399)
-+......+++.+. +.+... +.+.+..++....+.. ....+|+++|.|=.+-. . . .. .+...
T Consensus 156 ------k~~~~e~~ll~~~~~~Le~~~~-~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~n~~~~~~~~~~~ 228 (368)
T TIGR00092 156 ------KDKKEELLLLEIILPLLNGGQM-ARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNLNNNYLLIVEWIA 228 (368)
T ss_pred ------hhhHHHHHHHHHHHHHHhCCCe-eccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhcccHHHHHHHHHh
Confidence 00111222333332 222222 2343332232333332 34458999999854211 1 0 11 11111
Q ss_pred c----CCCEEEecchhcc-----------------------chHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecCC
Q 015822 261 R----QPNSVVISCNLKL-----------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDR 313 (399)
Q Consensus 261 ~----~~~~i~vSa~~~~-----------------------gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~r 313 (399)
+ ...++++||..+. +++.|....|+.|+++.+||.+ ++..++|.+++
T Consensus 229 ~~~~~~~~~~~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g----~~EvRaWti~~-- 302 (368)
T TIGR00092 229 AYSKGDPKVVFVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGG----KEEVRAWTRKG-- 302 (368)
T ss_pred hcCcCCCeEEEeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCC----CceeEEeecCC--
Confidence 1 1236667764432 4456778889999999999985 56788999999
Q ss_pred CCCCHHHHHHHHHHHHhhccceeEEeccC----------CccCC--cccCCCceecCCCeEEE
Q 015822 314 GGCTVEDFCNHIHRSLVKDVKYVLVWGTS----------ARHYP--QHCGLGHVLQDEDVVQI 364 (399)
Q Consensus 314 ~g~tv~~~a~~ih~~l~~~f~~a~~wg~s----------~~~~~--~rvg~~~~l~d~dvv~i 364 (399)
|+|+.++|..||+||+++|..|.|...+ +|..| +..|+||+++|||||.+
T Consensus 303 -G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f 364 (368)
T TIGR00092 303 -GWAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFF 364 (368)
T ss_pred -CCchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEE
Confidence 9999999999999999999999986432 44445 78999999999999986
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=7.5e-28 Score=216.07 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=131.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++++|.+ |+.++|+||+||||||||+||.+.+.+ ++|.|.++|..+..-. . ....+..+|+++
T Consensus 20 gi~l~v~~--Gevv~iiGpSGSGKSTlLRclN~LE~~-----------~~G~I~i~g~~~~~~~--~-~~~~R~~vGmVF 83 (240)
T COG1126 20 GISLSVEK--GEVVVIIGPSGSGKSTLLRCLNGLEEP-----------DSGSITVDGEDVGDKK--D-ILKLRRKVGMVF 83 (240)
T ss_pred CcceeEcC--CCEEEEECCCCCCHHHHHHHHHCCcCC-----------CCceEEECCEeccchh--h-HHHHHHhcCeec
Confidence 88999999 779999999999999999999999977 9999999997764321 1 122356789999
Q ss_pred hhccccCChhhhHHHHh------cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIAVSKSSDIVLMVLD------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d------~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|..+++++..++..+.- .....+..+...++|+++|+ ..+.+|.+|||||+||++|| +++|||
T Consensus 84 Q~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP 163 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP 163 (240)
T ss_pred ccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC
Confidence 99999999877765533 34455667788999999999 88999999999999999998 888999
Q ss_pred CCCCCHHHHHHHH---HHhhhCC-cEEEEcCCCCHHH
Q 015822 195 LTHVDEKLCYQIL---HEYKIHN-AEVLFREDATVDD 227 (399)
Q Consensus 195 ts~LD~~~v~~ll---~~l~~~~-~~v~vthd~~~~~ 227 (399)
||+||++.+.++| +.+...+ |.++|||++....
T Consensus 164 TSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr 200 (240)
T COG1126 164 TSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAR 200 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHH
Confidence 9999999655555 4555555 9999999988754
No 12
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=2.7e-27 Score=217.41 Aligned_cols=166 Identities=21% Similarity=0.269 Sum_probs=132.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++|+|+||+|||||||||+|.|.+.| ++|.+.++|.++..++...+.......+|+++
T Consensus 23 ~v~l~i~~--Ge~vaI~GpSGSGKSTLLniig~ld~p-----------t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvF 89 (226)
T COG1136 23 DVNLEIEA--GEFVAIVGPSGSGKSTLLNLLGGLDKP-----------TSGEVLINGKDLTKLSEKELAKLRRKKIGFVF 89 (226)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEcCcCCHHHHHHHHHHhEEEEC
Confidence 78888888 789999999999999999999999877 89999999998887776555555567789999
Q ss_pred hhccccCChhhhHHHH-----hcCCcHHHHHHHHHHHHHcCC--ccc-ccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIAVSKSSDIVLMVL-----DASKSEGHRQILTKELEAVGL--RLN-KRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~~~~~~d~il~v~-----d~~~~~~~~~~i~~~L~~~gi--~~~-~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|....++..++...+. .........+.+..+++.+|+ ... ++|.+|||||+||++|| +++|||
T Consensus 90 Q~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEP 169 (226)
T COG1136 90 QNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP 169 (226)
T ss_pred ccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCc
Confidence 9999888876654432 111111345677888888898 455 88999999999999999 889999
Q ss_pred CCCCCHHHHHH---HHHHhhhC-C-cEEEEcCCCCHHHHHH
Q 015822 195 LTHVDEKLCYQ---ILHEYKIH-N-AEVLFREDATVDDLID 230 (399)
Q Consensus 195 ts~LD~~~v~~---ll~~l~~~-~-~~v~vthd~~~~~~~~ 230 (399)
|.+||.++..+ ++.++... + |+|+||||..+...+|
T Consensus 170 TgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 170 TGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred cccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 99999985544 45555422 3 9999999998887655
No 13
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.94 E-value=6.1e-27 Score=227.90 Aligned_cols=219 Identities=25% Similarity=0.298 Sum_probs=160.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEE------------------------CCEeecccCccccc
Q 015822 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY------------------------NDTKIQLLDLPGII 120 (399)
Q Consensus 65 valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~------------------------~g~~i~~iD~~Gl~ 120 (399)
++|||.||||||||||+||+..+.+++|||||++|+.|.+.+ .+.+++++|+||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999999999999999999999998875 23689999999999
Q ss_pred cccccCcccchhhccccCChhhhHHHHhcCC---------------cHHHHHHHHHHHHHcCC-cccccccccchhhHhh
Q 015822 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASK---------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKT 184 (399)
Q Consensus 121 ~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~---------------~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr 184 (399)
++++.+.+++++++..++++|++++|+|++. +..+.+.+..+|..+.+ .+.+++..++- +..+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~-~~~~ 159 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVR-KADA 159 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 9988888999999999999999999999863 45678889999988765 56666666652 2222
Q ss_pred cCce--eeeccCCC--CCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh-HHHH
Q 015822 185 GGIS--FNSTLPLT--HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKL 259 (399)
Q Consensus 185 ~~ia--li~DEpts--~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-~~~l 259 (399)
.... .......+ +.+...+.++|+. ....+.+....+.+++++.+... ...+|+|+|+||+|+...++ .+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~~~~~~~~~~~l--lt~KPvI~VlNK~Dl~~~~~~~~~l 236 (318)
T cd01899 160 EKTDIVEALSEQLSGFGVNEKDVIEALEE-LELPEDLSKWTDEDLLRLARALR--KRSKPMVIAANKADIPDAENNISKL 236 (318)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHh-CCCCCcccCCCHHHHHHHHHHHH--hcCCcEEEEEEHHHccChHHHHHHH
Confidence 2221 11222233 5677788888855 33233332223333444444443 34589999999999874443 2222
Q ss_pred H---cCCCEEEecchhccchHHHHH-HHHHHh
Q 015822 260 A---RQPNSVVISCNLKLNLDRLLA-RMWEEM 287 (399)
Q Consensus 260 ~---~~~~~i~vSa~~~~gl~~L~~-~i~~~l 287 (399)
. ....++++||+.+.++++|.+ .+.+.+
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 2 234699999999999999997 588877
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.8e-26 Score=208.31 Aligned_cols=154 Identities=23% Similarity=0.223 Sum_probs=121.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++|+|+||+|||||||||+++|...+ ..|.+.++|.++. +....+++++
T Consensus 21 ~i~L~v~~--GEfvsilGpSGcGKSTLLriiAGL~~p-----------~~G~V~~~g~~v~---------~p~~~~~~vF 78 (248)
T COG1116 21 DINLSVEK--GEFVAILGPSGCGKSTLLRLIAGLEKP-----------TSGEVLLDGRPVT---------GPGPDIGYVF 78 (248)
T ss_pred cceeEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCcccC---------CCCCCEEEEe
Confidence 78888888 789999999999999999999999876 8999999998872 2234567888
Q ss_pred hhccccCChhh---hHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDI---VLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~---il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++-..+ +.+.++.. ...+..+++.+.|+.+|+ ..+++|.+||||||||++|| +++|||+
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 88777776444 43434432 234455689999999999 88999999999999999999 9999999
Q ss_pred CCCCHHHHHHH---HHHhh--hCCcEEEEcCCCCHHH
Q 015822 196 THVDEKLCYQI---LHEYK--IHNAEVLFREDATVDD 227 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~--~~~~~v~vthd~~~~~ 227 (399)
++||.-+-..+ +..+. ...|+++||||....-
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv 195 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV 195 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 99998743333 33332 3359999999976543
No 15
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.7e-25 Score=210.51 Aligned_cols=184 Identities=21% Similarity=0.255 Sum_probs=145.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|+|.+ |+++||||++|||||||++++.+.+.| ++|.+.++|.++.-++-.+++. .++.+|+.+
T Consensus 24 ~vsL~I~~--GeI~GIIG~SGAGKSTLiR~iN~Le~P-----------tsG~v~v~G~di~~l~~~~Lr~-~R~~IGMIF 89 (339)
T COG1135 24 DVSLEIPK--GEIFGIIGYSGAGKSTLLRLINLLERP-----------TSGSVFVDGQDLTALSEAELRQ-LRQKIGMIF 89 (339)
T ss_pred cceEEEcC--CcEEEEEcCCCCcHHHHHHHHhccCCC-----------CCceEEEcCEecccCChHHHHH-HHhhccEEe
Confidence 78999998 779999999999999999999999977 9999999999999888887764 567799999
Q ss_pred hhccccCCh---hhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+... +++.+-+. .....+..+++.++|+.+|+ ..+++|.+||||||||++|| |++||||
T Consensus 90 QhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaT 169 (339)
T COG1135 90 QHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEAT 169 (339)
T ss_pred ccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCcc
Confidence 988877653 44444333 23345567789999999999 88999999999999999999 8999999
Q ss_pred CCCCHHHHHHHHHHhh-----hCCcEEEEcCCCCHH-HHHHHHhhccccccEEEEEecCCCCChhhHHHH
Q 015822 196 THVDEKLCYQILHEYK-----IHNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (399)
Q Consensus 196 s~LD~~~v~~ll~~l~-----~~~~~v~vthd~~~~-~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l 259 (399)
|+||+++...+|..++ +.-|+++|||.+.+. ++|+ .+.|+.+.-++.......+
T Consensus 170 SALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~----------rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 170 SALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICD----------RVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred ccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhh----------hheEeeCCEEEEeccHHHh
Confidence 9999997666665554 233999999998764 3443 4556665555443333343
No 16
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=210.26 Aligned_cols=158 Identities=35% Similarity=0.500 Sum_probs=129.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe-ecccCccccccccccCcccchhhccccCCh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
-.-++|||.||||||||||+|+...+.|++|||||+.|.-|++.+++.. +.+.|.||++++++.+.|++.+|+..++.+
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 4579999999999999999999999999999999999999999997754 999999999999999999999999999999
Q ss_pred hhhHHHHhcCCc-----HHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCc
Q 015822 141 DIVLMVLDASKS-----EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (399)
Q Consensus 141 d~il~v~d~~~~-----~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~ 215 (399)
+.+++|+|.+.+ .++.+.+..+|+.++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye------------------------------------------------ 307 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYE------------------------------------------------ 307 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 999999998764 333333334433321
Q ss_pred EEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC-Chhh-HHHHHcC---CCEEEecchhccchHHHHHHHHH
Q 015822 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDD-VDKLARQ---PNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 216 ~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~-~~~~-~~~l~~~---~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
.....+|.++|+||+|+. .+++ ++.|.+. +.++++||++++|++.|++.+.+
T Consensus 308 ------------------k~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 308 ------------------KGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred ------------------hhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 122347999999999996 3333 3666533 34899999999999999988765
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.92 E-value=8.4e-25 Score=212.14 Aligned_cols=182 Identities=18% Similarity=0.222 Sum_probs=140.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++++++.. |++++|+|||||||||||++|+|.+.+ ++|.|.++|..+.-+. ...+++++++
T Consensus 21 ~i~l~i~~--Gef~vllGPSGcGKSTlLr~IAGLe~~-----------~~G~I~i~g~~vt~l~------P~~R~iamVF 81 (338)
T COG3839 21 DVNLDIED--GEFVVLLGPSGCGKSTLLRMIAGLEEP-----------TSGEILIDGRDVTDLP------PEKRGIAMVF 81 (338)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCC------hhHCCEEEEe
Confidence 57888888 779999999999999999999999876 9999999999987543 3467899999
Q ss_pred hhccccCCh---hhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|...++++. +++.+-+... ...+..+++.+.++.++| .++++|.+|||||+||++++ +++|||+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 999999985 4455544433 234556789999999999 89999999999999999998 8999999
Q ss_pred CCCCHHH---HHHHHHHhh--hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHc
Q 015822 196 THVDEKL---CYQILHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (399)
Q Consensus 196 s~LD~~~---v~~ll~~l~--~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~ 261 (399)
|+||... .+..++.+. +..|.|+||||...... .-..|+|+|+.-+..-....+++.
T Consensus 162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmt---------ladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMT---------LADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHh---------hCCEEEEEeCCeeeecCChHHHhh
Confidence 9999873 344444443 34599999999654331 247789999665443333334443
No 18
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=7.6e-25 Score=205.02 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=130.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|||||||||||++|+|...| ..|.|.++|.++.-+.... ..+.+++.+
T Consensus 20 ~ls~~i~~--G~i~~iiGpNG~GKSTLLk~l~g~l~p-----------~~G~V~l~g~~i~~~~~ke----lAk~ia~vp 82 (258)
T COG1120 20 DLSFSIPK--GEITGILGPNGSGKSTLLKCLAGLLKP-----------KSGEVLLDGKDIASLSPKE----LAKKLAYVP 82 (258)
T ss_pred cceEEecC--CcEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCCchhhcCHHH----HhhhEEEec
Confidence 78999998 779999999999999999999998766 8999999999887655432 234466666
Q ss_pred hhccccCC---hhhhHHHHh----cC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS---SDIVLMVLD----AS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d----~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....... .|++.+-.. .+ ...++.+.+.+.|+.+|+ ..++.+..|||||+||+.|| +++
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence 66433333 333333211 11 134566678999999999 78899999999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhhC--CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKIH--NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~~--~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||||++||.....++ ++.+... .++|++.||++..- .|...+++++...+
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~---------ryad~~i~lk~G~i 217 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAA---------RYADHLILLKDGKI 217 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH---------HhCCEEEEEECCeE
Confidence 999999999855444 4555422 38999999998754 35677888876543
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2e-24 Score=201.19 Aligned_cols=168 Identities=22% Similarity=0.226 Sum_probs=127.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+||||||||||+++++|...| .+|.+.+.|.++.-.. ....+||++
T Consensus 22 ~i~l~v~~--G~~~~iiGPNGaGKSTLlK~iLGll~p-----------~~G~i~~~g~~~~~~~-------~~~~IgYVP 81 (254)
T COG1121 22 DISLSVEK--GEITALIGPNGAGKSTLLKAILGLLKP-----------SSGEIKIFGKPVRKRR-------KRLRIGYVP 81 (254)
T ss_pred ccEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCcC-----------CcceEEEccccccccc-------cCCeEEEcC
Confidence 78898988 779999999999999999999998765 8999999887764322 123467777
Q ss_pred hhccccCC--hhhhHHHHhc---C------CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKS--SDIVLMVLDA---S------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~---~------~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....-.. ..+.-+|.-+ . ....+.+.+.+.|+.+|+ ..+++..+|||||+||+.|| +
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 75422111 2222222211 0 123456789999999999 78999999999999999988 9
Q ss_pred eeccCCCCCCHH---HHHHHHHHhhhCC-cEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 190 NSTLPLTHVDEK---LCYQILHEYKIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 190 i~DEpts~LD~~---~v~~ll~~l~~~~-~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
++||||+++|.. .+.++|++++..+ ++++|+||+.... .+.+.++.+||-
T Consensus 162 lLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~---------~~~D~vi~Ln~~ 215 (254)
T COG1121 162 LLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVM---------AYFDRVICLNRH 215 (254)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhH---------hhCCEEEEEcCe
Confidence 999999999987 5666777776545 9999999987533 356888999974
No 20
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.92 E-value=1.8e-24 Score=190.45 Aligned_cols=162 Identities=22% Similarity=0.250 Sum_probs=129.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++-|+||+|||||||++.|++...| +.|.+.++|.++.-+....+ +..++.+|.++
T Consensus 20 ~vs~~i~~--Gef~fl~GpSGAGKSTllkLi~~~e~p-----------t~G~i~~~~~dl~~l~~~~i-P~LRR~IGvVF 85 (223)
T COG2884 20 DVSFHIPK--GEFVFLTGPSGAGKSTLLKLIYGEERP-----------TRGKILVNGHDLSRLKGREI-PFLRRQIGVVF 85 (223)
T ss_pred CceEeecC--ceEEEEECCCCCCHHHHHHHHHhhhcC-----------CCceEEECCeeccccccccc-chhhheeeeEe
Confidence 78899998 789999999999999999999999876 99999999998876543222 23356788899
Q ss_pred hhccccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|...++.+ .|++.+.+. +..+.+...++.+.|+.+|+ ..+..|.+|||||+||++|| |++||||
T Consensus 86 QD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPT 165 (223)
T COG2884 86 QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT 165 (223)
T ss_pred eeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCC
Confidence 98777766 455544433 33455567789999999999 78889999999999999999 8999999
Q ss_pred CCCCHHHHHHHH---HHhhhCC-cEEEEcCCCCHHH
Q 015822 196 THVDEKLCYQIL---HEYKIHN-AEVLFREDATVDD 227 (399)
Q Consensus 196 s~LD~~~v~~ll---~~l~~~~-~~v~vthd~~~~~ 227 (399)
.+||++..++++ +++...+ |+++.|||..+.+
T Consensus 166 GNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred CCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHH
Confidence 999999655554 4555334 8999999987654
No 21
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=222.74 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHhhh--hcCCC------------CC-CCC-----------------
Q 015822 3 IIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQ--LLEPP------------KG-SSG----------------- 50 (399)
Q Consensus 3 ~~~~i~~le~~i~~~~~~k~t~~~~~~l~~~l~~l~~~--~~~~~------------~~-~~~----------------- 50 (399)
.|++++++++|++|+.++..+.++.....+++++|+.+ ...+. .. ..+
T Consensus 256 ~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~ 335 (530)
T COG0488 256 QQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGR 335 (530)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCc
Confidence 47889999999999998877755555556888888832 11111 00 011
Q ss_pred ---CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC-CEeecccCccccccccccC
Q 015822 51 ---AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEG 126 (399)
Q Consensus 51 ---~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i~~iD~~Gl~~~~~~~ 126 (399)
.+++|.+.+ |.+||||||||+||||||+.|+|...+ .+|.+.+. +..+.++
T Consensus 336 ~l~~~~s~~i~~--g~riaiiG~NG~GKSTLlk~l~g~~~~-----------~~G~v~~g~~v~igyf------------ 390 (530)
T COG0488 336 LLLKDLSFRIDR--GDRIAIVGPNGAGKSTLLKLLAGELGP-----------LSGTVKVGETVKIGYF------------ 390 (530)
T ss_pred eeecCceEEecC--CCEEEEECCCCCCHHHHHHHHhhhccc-----------CCceEEeCCceEEEEE------------
Confidence 056666766 789999999999999999999998765 68988873 2334333
Q ss_pred cccchhhcccc-CChhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeecc
Q 015822 127 KGRGRQVIAVS-KSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 127 ~~~~~q~~~~~-~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
.|....+ .+-.++-++.+.... .....++..|..|++ ...+++..||||||.|+.+| |++||
T Consensus 391 ----~Q~~~~l~~~~t~~d~l~~~~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 391 ----DQHRDELDPDKTVLEELSEGFPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred ----EehhhhcCccCcHHHHHHhhCcc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 3443222 222344444444322 225678999999999 67899999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHhh-hCCcEEEEcCCCCH
Q 015822 194 PLTHVDEKLCYQILHEYK-IHNAEVLFREDATV 225 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l~-~~~~~v~vthd~~~ 225 (399)
|||+||.+++..+.+.+. +.+++|+||||-..
T Consensus 466 PTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~F 498 (530)
T COG0488 466 PTNHLDIESLEALEEALLDFEGTVLLVSHDRYF 498 (530)
T ss_pred CCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 999999999999999997 88999999999543
No 22
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=1.5e-24 Score=187.90 Aligned_cols=168 Identities=23% Similarity=0.239 Sum_probs=139.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++++.|.+ |+.++||||+|||||||+-.|+|.+.+ ++|.+.+.|.++.-+|.-+........+|+++
T Consensus 28 ~V~L~v~~--Ge~vaiVG~SGSGKSTLl~vlAGLd~~-----------ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 28 GVELVVKR--GETVAIVGPSGSGKSTLLAVLAGLDDP-----------SSGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred cceEEecC--CceEEEEcCCCCcHHhHHHHHhcCCCC-----------CCceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 78888888 789999999999999999999999866 89999999999988887766555567789999
Q ss_pred hhccccCChhhhHHH-----HhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMV-----LDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v-----~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+++.+.+..| ++.............+|+++|+ ++..+|.+|||||+||++|| ++.||||
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPT 174 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPT 174 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCC
Confidence 988888887776654 2222233445668899999999 99999999999999999998 9999999
Q ss_pred CCCCHH---HHHHHHHHhhh-C-CcEEEEcCCCCHHHHHHHH
Q 015822 196 THVDEK---LCYQILHEYKI-H-NAEVLFREDATVDDLIDVI 232 (399)
Q Consensus 196 s~LD~~---~v~~ll~~l~~-~-~~~v~vthd~~~~~~~~~i 232 (399)
.+||.+ .+..+|-.+.. . .|.|+||||..+...|+..
T Consensus 175 GNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 175 GNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred CCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhe
Confidence 999987 45666666653 2 3899999999998877654
No 23
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=1.9e-24 Score=198.14 Aligned_cols=183 Identities=18% Similarity=0.213 Sum_probs=141.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.. |+.++++||+||||||+|+++.+...| ++|.|.++|.++.-+|...+ +..+||+-
T Consensus 19 ~v~l~I~~--gef~vliGpSGsGKTTtLkMINrLiep-----------t~G~I~i~g~~i~~~d~~~L----Rr~IGYvi 81 (309)
T COG1125 19 DVNLTIEE--GEFLVLIGPSGSGKTTTLKMINRLIEP-----------TSGEILIDGEDISDLDPVEL----RRKIGYVI 81 (309)
T ss_pred eeeEEecC--CeEEEEECCCCCcHHHHHHHHhcccCC-----------CCceEEECCeecccCCHHHH----HHhhhhhh
Confidence 77888888 789999999999999999999999755 99999999999988886544 45688888
Q ss_pred hhccccCChhh---hHHHHhc--CCcHHHHHHHHHHHHHcCC----cccccccccchhhHhhcCce---------eeecc
Q 015822 132 QVIAVSKSSDI---VLMVLDA--SKSEGHRQILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 132 q~~~~~~~~d~---il~v~d~--~~~~~~~~~i~~~L~~~gi----~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
|...++++..+ |..|-.. .......+++.++|..+|+ +.+++|.+|||||+||++++ +++||
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE 161 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE 161 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC
Confidence 88888888544 4444332 2344556789999999999 67899999999999999987 89999
Q ss_pred CCCCCCHHHHHHH---HHHhh--hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH
Q 015822 194 PLTHVDEKLCYQI---LHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (399)
Q Consensus 194 pts~LD~~~v~~l---l~~l~--~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~ 260 (399)
|+++||+-...++ +..++ +..|+++||||++..- .....|.|+++..+......+.+.
T Consensus 162 PFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~---------kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 162 PFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEAL---------KLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred CccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHH---------hhhceEEEecCCeEEEeCCHHHHH
Confidence 9999999754444 44443 4569999999986543 123678888887665333333443
No 24
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=3.6e-24 Score=208.75 Aligned_cols=181 Identities=22% Similarity=0.246 Sum_probs=141.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++++++.+ |++++|+||+||||||||++|+|.+.| ++|.|.++|.++.-+ | ...+++++++
T Consensus 23 ~isl~i~~--Gef~~lLGPSGcGKTTlLR~IAGfe~p-----------~~G~I~l~G~~i~~l--p----p~kR~ig~VF 83 (352)
T COG3842 23 DISLDIKK--GEFVTLLGPSGCGKTTLLRMIAGFEQP-----------SSGEILLDGEDITDV--P----PEKRPIGMVF 83 (352)
T ss_pred cceeeecC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCC--C----hhhcccceee
Confidence 78888988 789999999999999999999999976 999999999998653 2 3567899999
Q ss_pred hhccccCChhh---hHHHHhcCC--c-HHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIAVSKSSDI---VLMVLDASK--S-EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~~~~~~d~---il~v~d~~~--~-~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|...++++.++ |.+-+.... + .+..+++.+.|+.+++ ...++|.+|||||+||+++| +++|||
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP 163 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence 99999998655 444444211 2 3345689999999999 88999999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhh-----hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH
Q 015822 195 LTHVDEKLCYQILHEYK-----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (399)
Q Consensus 195 ts~LD~~~v~~ll~~l~-----~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~ 260 (399)
+|+||..--.++-.+++ ..-|.|+||||....- ...+.|+|+|+.-+......++++
T Consensus 164 lSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl---------~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 164 LSALDAKLREQMRKELKELQRELGITFVYVTHDQEEAL---------AMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh---------hhccceEEccCCceeecCCHHHHh
Confidence 99999874444444432 2338999999976533 235789999998665333334444
No 25
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.91 E-value=1.2e-24 Score=206.96 Aligned_cols=163 Identities=31% Similarity=0.436 Sum_probs=131.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC-CEeecccCccccccccccCcccchhhccccCCh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
=.-|+|||.||||||||+++++...+.|++|||||+.|+-|.+.+. +..+.+.|.||+++++++|.|++.+|+..++.+
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3469999999999999999999999999999999999999999984 455889999999999999999999999999999
Q ss_pred hhhHHHHhcCC-----cHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCc
Q 015822 141 DIVLMVLDASK-----SEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (399)
Q Consensus 141 d~il~v~d~~~-----~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~ 215 (399)
.+++|++|.+. +.++.+.+..+|+.++.
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~----------------------------------------------- 271 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP----------------------------------------------- 271 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-----------------------------------------------
Confidence 99999999764 34455556666554321
Q ss_pred EEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC-ChhhHHHHH----c---CCCEEEecchhccchHHHHHHHHHHh
Q 015822 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVDKLA----R---QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 216 ~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~-~~~~~~~l~----~---~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
....+|.++|+||+|++ +.++++.+. + +...++|||.++.|++.|+..+++.+
T Consensus 272 -------------------~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 272 -------------------KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred -------------------HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHH
Confidence 12248999999999965 555554432 1 12233499999999999999998877
Q ss_pred Cce
Q 015822 288 GLV 290 (399)
Q Consensus 288 ~~i 290 (399)
...
T Consensus 333 ~~~ 335 (369)
T COG0536 333 EET 335 (369)
T ss_pred HHh
Confidence 643
No 26
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=214.87 Aligned_cols=185 Identities=28% Similarity=0.297 Sum_probs=138.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCcccccccc----ccCcccchhhccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA----SEGKGRGRQVIAV 136 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~----~~~~~~~~q~~~~ 136 (399)
|..++|+|+||||||||||+|++.+ +.|+++||||||..++.+.++|.++.++||+|+++.. +.|+. .....
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIe---Rs~~~ 293 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIE---RAKKA 293 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHH---HHHHH
Confidence 6799999999999999999999999 5799999999999999999999999999999998643 22332 23345
Q ss_pred cCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcE
Q 015822 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (399)
Q Consensus 137 ~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~ 216 (399)
+.+||++++|+|++.+....+. .
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~------------------------------------------~--------------- 316 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL------------------------------------------A--------------- 316 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH------------------------------------------H---------------
Confidence 6889999999998874221110 0
Q ss_pred EEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH--HcCCCEEEecchhccchHHHHHHHHHHhCceEEEe
Q 015822 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL--ARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 294 (399)
Q Consensus 217 v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l--~~~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~ 294 (399)
+.+ .....+|.++|+||+|+.++.....+ ......+.+||+++.|++.|.++|.+.+...
T Consensus 317 -----------~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~---- 378 (454)
T COG0486 317 -----------LIE---LLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG---- 378 (454)
T ss_pred -----------HHH---hcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc----
Confidence 000 01224799999999999976654433 2223489999999999999999998877542
Q ss_pred CCCCCCCCCCCcEEeecCCCCCCHHHHHHHHHHHHh
Q 015822 295 KPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLV 330 (399)
Q Consensus 295 ~~~~~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~ 330 (399)
.+..+..++.+.||-..++.+..++...+.
T Consensus 379 ------~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~ 408 (454)
T COG0486 379 ------LGNQEGLFLSNLRHIQLLEQAAEHLEDALQ 408 (454)
T ss_pred ------ccccccceeecHHHHHHHHHHHHHHHHHHh
Confidence 122223445555899888888888775544
No 27
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.90 E-value=1.2e-23 Score=160.75 Aligned_cols=75 Identities=69% Similarity=1.194 Sum_probs=72.9
Q ss_pred ceEEEeCCCCCCCCCCCcEEeecCCCCCCHHHHHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCeEEEEe
Q 015822 289 LVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVK 366 (399)
Q Consensus 289 ~i~~~~~~~~~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dvv~i~~ 366 (399)
++|||||++|..||+++|+++++ |+|+.|+|+++|+++.+.|+||.+||.|+++.|||||+||+|+|||||+|++
T Consensus 1 lirvytk~~g~~~d~~~~liL~~---GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRR---GSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECC---CCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 58999999999999999999999 9999999999999999999999999999999999999999999999999984
No 28
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.9e-23 Score=191.18 Aligned_cols=175 Identities=18% Similarity=0.181 Sum_probs=123.9
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.++||++.+ |+++||+|++|||||||.++|+|...+ ..|.|.++|.++.-..-.. .....+.++
T Consensus 24 ~~VS~~i~~--Ge~lgivGeSGsGKSTL~r~l~Gl~~p-----------~~G~I~~~G~~~~~~~~~~---~~~~~VQmV 87 (252)
T COG1124 24 NNVSLEIER--GETLGIVGESGSGKSTLARLLAGLEKP-----------SSGSILLDGKPLAPKKRAK---AFYRPVQMV 87 (252)
T ss_pred cceeEEecC--CCEEEEEcCCCCCHHHHHHHHhcccCC-----------CCceEEECCcccCccccch---hhccceeEE
Confidence 378888888 789999999999999999999999876 8999999997764321110 122334556
Q ss_pred hhhccc-cCC---h-hhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIAV-SKS---S-DIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~~-~~~---~-d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|.... +.. . +.+-..+...+-....+++.++|+.+|+ .++++|.+|||||+||++|| |++||
T Consensus 88 FQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE 167 (252)
T COG1124 88 FQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE 167 (252)
T ss_pred ecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC
Confidence 665421 111 1 1121122222222334458999999999 89999999999999999998 99999
Q ss_pred CCCCCCHH---HHHHHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 194 PLTHVDEK---LCYQILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 194 pts~LD~~---~v~~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
|||+||.. .+..+|.+++. ..+.++||||..+.+.+ ++.+.|+...-+
T Consensus 168 ptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~---------cdRi~Vm~~G~i 220 (252)
T COG1124 168 PTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM---------CDRIAVMDNGQI 220 (252)
T ss_pred chhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHH---------hhheeeeeCCeE
Confidence 99999987 45666666653 33999999998875521 345566665543
No 29
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.8e-23 Score=190.12 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=133.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++|+|||++||||||||++|.|.. +|+.|.+.++|.++.-.-...+. ..+..+|+.+
T Consensus 22 ~Vnl~I~~--GE~VaiIG~SGaGKSTLLR~lngl~-----------d~t~G~i~~~g~~i~~~~~k~lr-~~r~~iGmIf 87 (258)
T COG3638 22 DVNLEINQ--GEMVAIIGPSGAGKSTLLRSLNGLV-----------DPTSGEILFNGVQITKLKGKELR-KLRRDIGMIF 87 (258)
T ss_pred eEeEEeCC--CcEEEEECCCCCcHHHHHHHHhccc-----------CCCcceEEecccchhccchHHHH-HHHHhceeEe
Confidence 78898988 7899999999999999999999975 45999999999877654333222 3456789999
Q ss_pred hhccccCChhhhHHHHhcC-------------CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKSSDIVLMVLDAS-------------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~-------------~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|...+++..+++-.|+.+. -+.++...+.+.|+++|| ...++..+|||||+||++||
T Consensus 88 Q~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 88 QQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCC
Confidence 9999999988887765432 135667778899999999 77889999999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh----hC-CcEEEEcCCCCHHH-HHHHH
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK----IH-NAEVLFREDATVDD-LIDVI 232 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~----~~-~~~v~vthd~~~~~-~~~~i 232 (399)
+++|||+++||+...+.+++.++ .. .|+++..|++++.. .++.+
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Ri 218 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRI 218 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhh
Confidence 88899999999986666655554 23 38999999988753 44444
No 30
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.5e-23 Score=195.57 Aligned_cols=188 Identities=20% Similarity=0.226 Sum_probs=141.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++++|+. |+.+||.|||||||||||++|+|.+.| +.|.|.++|..+ .|+.- .......+|+.+
T Consensus 20 di~l~i~~--Ge~vaLlGpSGaGKsTlLRiIAGLe~p-----------~~G~I~~~~~~l--~D~~~-~~~~~R~VGfvF 83 (345)
T COG1118 20 DISLDIKS--GELVALLGPSGAGKSTLLRIIAGLETP-----------DAGRIRLNGRVL--FDVSN-LAVRDRKVGFVF 83 (345)
T ss_pred cceeeecC--CcEEEEECCCCCcHHHHHHHHhCcCCC-----------CCceEEECCEec--cchhc-cchhhcceeEEE
Confidence 67888887 789999999999999999999999976 999999999843 23322 123456789999
Q ss_pred hhccccCCh---hhhHHHHhcC----CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 132 QVIAVSKSS---DIVLMVLDAS----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~----~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
|....+++. |+|.+-+... +......++.++|+.+.+ ..+++|.+|||||+||+++| |++||
T Consensus 84 Q~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred echhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 998888884 4555443222 123456678899999988 78899999999999999998 99999
Q ss_pred CCCCCCHH---HHHHHHHHhh--hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHcCCC
Q 015822 194 PLTHVDEK---LCYQILHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPN 264 (399)
Q Consensus 194 pts~LD~~---~v~~ll~~l~--~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~~~~ 264 (399)
|+++||.. .++..|+.+. ...+.++||||....- ...+.++|+|+.-+.......+++..|.
T Consensus 164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~---------~ladrvvvl~~G~Ieqvg~p~ev~~~P~ 230 (345)
T COG1118 164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL---------ELADRVVVLNQGRIEQVGPPDEVYDHPA 230 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHH---------hhcceEEEecCCeeeeeCCHHHHhcCCC
Confidence 99999987 5666666665 3458999999965422 1357899999886543333344444443
No 31
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=3.6e-23 Score=180.98 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=123.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
...|++....|++|||+||+|||||||||.++|...| .+|.+.++|.+....+ .+.+-+.+.+
T Consensus 15 ~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-----------~~G~i~i~g~d~t~~~------P~~RPVSmlF 77 (231)
T COG3840 15 PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-----------ASGEILINGVDHTASP------PAERPVSMLF 77 (231)
T ss_pred eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-----------CCceEEEcCeecCcCC------cccCChhhhh
Confidence 3445555556899999999999999999999999876 8999999999876543 2334466777
Q ss_pred hhccccCChhhhHHHHhcCC-----cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMVLDASK-----SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~-----~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|.-+.+...++--.+--+.. ...+.++++..+.++|+ ..++.|.+|||||+||+++| +++|||+
T Consensus 78 QEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF 157 (231)
T COG3840 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF 157 (231)
T ss_pred hccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch
Confidence 77777777666555432222 24577889999999999 88999999999999999999 8999999
Q ss_pred CCCCHHHHHHH---HHHhh--hCCcEEEEcCCCCHH
Q 015822 196 THVDEKLCYQI---LHEYK--IHNAEVLFREDATVD 226 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~--~~~~~v~vthd~~~~ 226 (399)
++||+.-..++ +..+. ...|+++|||..+..
T Consensus 158 sALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da 193 (231)
T COG3840 158 SALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA 193 (231)
T ss_pred hhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 99999854444 44444 235999999987643
No 32
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=2e-24 Score=188.70 Aligned_cols=148 Identities=30% Similarity=0.442 Sum_probs=104.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCc-ccchhhccccCChhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSDI 142 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~-~~~~q~~~~~~~~d~ 142 (399)
+|+|+|.||||||||||+|+|....++||||||+++..|.+.+++.++.++|+||+........ .......-.....|+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ 81 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDL 81 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCE
Confidence 6999999999999999999999999999999999999999999999999999999865322211 111111112366889
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++|+|++..........+++
T Consensus 82 ii~VvDa~~l~r~l~l~~ql~----------------------------------------------------------- 102 (156)
T PF02421_consen 82 IIVVVDATNLERNLYLTLQLL----------------------------------------------------------- 102 (156)
T ss_dssp EEEEEEGGGHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999876433322111111
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHH
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARM 283 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i 283 (399)
...+|+++|+||+|..... +.+.+.+ ..+++++||.++.|+++|+++|
T Consensus 103 -------------e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 103 -------------ELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -------------HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred -------------HcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 0137999999999976432 1233332 2459999999999999999875
No 33
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=1.6e-23 Score=196.88 Aligned_cols=217 Identities=25% Similarity=0.276 Sum_probs=147.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccc-cCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-EGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~-~~~~~~~q~~~~~~~~d 141 (399)
+|||||+||||||||+|.|.|.. +.||+.|+|||....|.+..+..++.++||||+....+ .+..+.......+..+|
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD 87 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD 87 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999998 67999999999999999999999999999999987633 23344566677889999
Q ss_pred hhHHHHhcCCcHHH-HHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 142 IVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 142 ~il~v~d~~~~~~~-~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
++++++|+...... .+.+. +.++
T Consensus 88 lilfvvd~~~~~~~~d~~il--------------------------------------------~~lk------------ 111 (298)
T COG1159 88 LILFVVDADEGWGPGDEFIL--------------------------------------------EQLK------------ 111 (298)
T ss_pred EEEEEEeccccCCccHHHHH--------------------------------------------HHHh------------
Confidence 99999998653211 11111 1111
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChhh-HHHHH-------cCCCEEEecchhccchHHHHHHHHHHhCceEE
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLA-------RQPNSVVISCNLKLNLDRLLARMWEEMGLVRV 292 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-~~~l~-------~~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~ 292 (399)
....|.++++||+|...++. +..+. .+..++|+||++|.|++.|.+.+.+.|..-..
T Consensus 112 ---------------~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 112 ---------------KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred ---------------hcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence 01369999999999886655 32221 24569999999999999999999998865322
Q ss_pred EeCCCCCCCCCCCcEEeecCCCCC-CHHHHHHHHHHHHhhccceeEEeccCCccCCcccCCCceec-CCCeEEEEecccc
Q 015822 293 YTKPQGQQPDFTEPVVLSVDRGGC-TVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQ-DEDVVQIVKKKEK 370 (399)
Q Consensus 293 ~~~~~~~~p~~~~~~~v~~~r~g~-tv~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~-d~dvv~i~~~~~~ 370 (399)
-+++.++..+ -..- ..+-+.+++-..+.+.+-|+.. +. .+-.-. ..+.+.|...+--
T Consensus 177 ---------~yp~d~itD~-~~rf~~aEiiREk~~~~l~eElPhsv~----Ve-------Ie~~~~~~~~~~~I~a~I~V 235 (298)
T COG1159 177 ---------YYPEDQITDR-PERFLAAEIIREKLLLLLREELPHSVA----VE-------IEEFEEREKGLLKIHATIYV 235 (298)
T ss_pred ---------cCChhhccCC-hHHHHHHHHHHHHHHHhcccccCceEE----EE-------EEEEEecCCCeEEEEEEEEE
Confidence 1222222222 0000 1123445555566677777765 22 222222 3556776665444
Q ss_pred cc
Q 015822 371 EE 372 (399)
Q Consensus 371 ~~ 372 (399)
|+
T Consensus 236 er 237 (298)
T COG1159 236 ER 237 (298)
T ss_pred ec
Confidence 33
No 34
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=1.6e-23 Score=191.80 Aligned_cols=187 Identities=20% Similarity=0.219 Sum_probs=146.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++||||||||||||||+|+|...| +.|++.++|.+|+-+..- ..++.|+.+.+
T Consensus 22 ~Vsl~v~~--Gei~~LIGPNGAGKTTlfNlitG~~~P-----------~~G~v~~~G~~it~l~p~---~iar~Gi~RTF 85 (250)
T COG0411 22 DVSLEVRP--GEIVGLIGPNGAGKTTLFNLITGFYKP-----------SSGTVIFRGRDITGLPPH---RIARLGIARTF 85 (250)
T ss_pred ceeEEEcC--CeEEEEECCCCCCceeeeeeecccccC-----------CCceEEECCcccCCCCHH---HHHhccceeec
Confidence 88999988 789999999999999999999999876 999999999988755422 24578889999
Q ss_pred hhccccCChhhhHHHHhcC-----------------CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce----
Q 015822 132 QVIAVSKSSDIVLMVLDAS-----------------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---- 188 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~-----------------~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---- 188 (399)
|....+++..++..+.-+. ...+..++..++|+.+|+ ..+.+..+||.|+++++.||
T Consensus 86 Q~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa 165 (250)
T COG0411 86 QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALA 165 (250)
T ss_pred ccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHh
Confidence 9999998877765543221 112345678889999999 78899999999999999988
Q ss_pred -----eeeccCCCCCCHHHHHH---HHHHhhh-C-CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHH
Q 015822 189 -----FNSTLPLTHVDEKLCYQ---ILHEYKI-H-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (399)
Q Consensus 189 -----li~DEpts~LD~~~v~~---ll~~l~~-~-~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~ 258 (399)
|++|||.+|+.+....+ +++++.. . -++++|.||+.+.- .....|+|++-...+.+...++
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm---------~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM---------GLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHh---------hhccEEEeccCCcCcccCCHHH
Confidence 99999999999985554 4555553 3 48999999987632 2357899999887765555555
Q ss_pred HHcCC
Q 015822 259 LARQP 263 (399)
Q Consensus 259 l~~~~ 263 (399)
+.+.|
T Consensus 237 V~~dp 241 (250)
T COG0411 237 VRNNP 241 (250)
T ss_pred HhcCH
Confidence 54443
No 35
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=5.8e-23 Score=201.68 Aligned_cols=161 Identities=29% Similarity=0.469 Sum_probs=125.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEE-CCEeecccCccccccccccCcccchhhccccCCh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
-..|+|||.||||||||||+|++..+.|++|||||++|+.|.+.+ ++.++.++|+||++++++.+.++..+++..++.+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 357999999999999999999998888999999999999999999 5678999999999998888888888988888999
Q ss_pred hhhHHHHhcCCcH--HHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEE
Q 015822 141 DIVLMVLDASKSE--GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (399)
Q Consensus 141 d~il~v~d~~~~~--~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~ 218 (399)
+++++|+|++... ++.+.+.++|..+ .
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~--------------------------------------------~------- 266 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKY--------------------------------------------S------- 266 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHh--------------------------------------------h-------
Confidence 9999999987542 1222222222110 0
Q ss_pred EcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhH-----HHH-HcC-CCEEEecchhccchHHHHHHHHHHhC
Q 015822 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV-----DKL-ARQ-PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 219 vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~-----~~l-~~~-~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.....+|.++|+||+|+...... ... ... ..++++||+++.|+++|++.+.+.+.
T Consensus 267 ---------------~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 267 ---------------PELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred ---------------hhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 00123799999999998754321 111 122 35899999999999999999988764
No 36
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=3.9e-23 Score=210.52 Aligned_cols=173 Identities=31% Similarity=0.427 Sum_probs=129.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
-..|+|||.||||||||||+|++..+.+++|||||++|+.|.+.+++.++.++|+||++++++.+.+++.+++..++.+|
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 56899999999999999999999988899999999999999999999999999999999888888888888888889999
Q ss_pred hhHHHHhcCCc------HHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCc
Q 015822 142 IVLMVLDASKS------EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (399)
Q Consensus 142 ~il~v~d~~~~------~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~ 215 (399)
++++|+|++.. ..+.+.+..+|..+.-.+.
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~-------------------------------------------- 274 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALD-------------------------------------------- 274 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhccc--------------------------------------------
Confidence 99999998642 2223333333332210000
Q ss_pred EEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHH-----HHHc-CCCEEEecchhccchHHHHHHHHHHhCc
Q 015822 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-----KLAR-QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (399)
Q Consensus 216 ~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~-----~l~~-~~~~i~vSa~~~~gl~~L~~~i~~~l~~ 289 (399)
.+... .....+|.|+|+||+|++...+.. .+.+ ..++++|||.++.|+++|+..+.+.+..
T Consensus 275 -----~~~~~--------~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 275 -----GDLGL--------GDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -----ccchh--------hhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00000 011247999999999997543321 1222 2358999999999999999998887765
Q ss_pred eE
Q 015822 290 VR 291 (399)
Q Consensus 290 i~ 291 (399)
.+
T Consensus 342 ~r 343 (500)
T PRK12296 342 AR 343 (500)
T ss_pred hh
Confidence 44
No 37
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.88 E-value=2.3e-23 Score=198.34 Aligned_cols=205 Identities=24% Similarity=0.345 Sum_probs=139.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE-----------------eecccCccccccccccCc
Q 015822 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGASEGK 127 (399)
Q Consensus 65 valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-----------------~i~~iD~~Gl~~~~~~~~ 127 (399)
+||||.||||||||||+||+....+++|||||++|+.|.+.+.+. +++++|+||+.++++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999999999999999999999999999774 589999999999998888
Q ss_pred ccchhhccccCChhhhHHHHhcC------------CcHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCceeeeccC
Q 015822 128 GRGRQVIAVSKSSDIVLMVLDAS------------KSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNSTLP 194 (399)
Q Consensus 128 ~~~~q~~~~~~~~d~il~v~d~~------------~~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~iali~DEp 194 (399)
+++++++..++++|++++|+|++ +|..+.+.+..+|..+.+ .+.+++..++-..+.. . ++
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~-~-----~~- 153 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSG-D-----KE- 153 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc-c-----HH-
Confidence 99999999999999999999875 356677888888888877 5566655554221110 0 00
Q ss_pred CCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhh-ccccccEEEEEecCC--CCC-hhhHHHHHc-----CCCE
Q 015822 195 LTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG-NRKYMKCVYVYNKID--VIG-IDDVDKLAR-----QPNS 265 (399)
Q Consensus 195 ts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~-~~~~~p~iiv~NK~D--l~~-~~~~~~l~~-----~~~~ 265 (399)
..--.+.+..+.+.+.. +-. +-.-+|+.++....-.- ....||+++|+|+.| ... ......+.. ...+
T Consensus 154 -~~~e~~~l~~~~~~L~~-~~~-~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~ 230 (274)
T cd01900 154 -AKAELELLEKIKEHLEE-GKP-ARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEV 230 (274)
T ss_pred -HHHHHHHHHHHHHHHHc-CCC-cCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhccccHHHHHHHHHHhcCCCeE
Confidence 00000112222222221 111 11246776663222211 344699999999997 322 222222221 2348
Q ss_pred EEecchhccchHHH
Q 015822 266 VVISCNLKLNLDRL 279 (399)
Q Consensus 266 i~vSa~~~~gl~~L 279 (399)
+++||..+..|-+|
T Consensus 231 i~~sa~~E~eL~~l 244 (274)
T cd01900 231 IPISAKIEAELAEL 244 (274)
T ss_pred EEeeHHHHHHHHcC
Confidence 99999988876544
No 38
>COG2262 HflX GTPases [General function prediction only]
Probab=99.88 E-value=1.4e-22 Score=197.45 Aligned_cols=197 Identities=29% Similarity=0.361 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCCCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEE
Q 015822 25 YHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII 104 (399)
Q Consensus 25 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i 104 (399)
.-.+.++.++.+++++++...+.+....- .-.+.+-..|+|||.+|||||||||+|||....+.|..|+|+||+.-.+
T Consensus 157 ~drR~ir~rI~~i~~eLe~v~~~R~~~R~--~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~ 234 (411)
T COG2262 157 TDRRRIRRRIAKLKRELENVEKAREPRRK--KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRI 234 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEE
Confidence 33456777777777765543211100000 0011123589999999999999999999999999999999999999999
Q ss_pred EEC-CEeecccCccccccccccCc-ccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhH
Q 015822 105 HYN-DTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKK 182 (399)
Q Consensus 105 ~~~-g~~i~~iD~~Gl~~~~~~~~-~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~k 182 (399)
.+. |.++.+.||.|++...+... .-+...+....++|++++|+|++++....+ +
T Consensus 235 ~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~-~----------------------- 290 (411)
T COG2262 235 ELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEK-L----------------------- 290 (411)
T ss_pred EeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHH-H-----------------------
Confidence 997 68899999999987654322 223344566778999999999998732211 1
Q ss_pred hhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh-HHHHHc
Q 015822 183 KTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLAR 261 (399)
Q Consensus 183 qr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-~~~l~~ 261 (399)
+.+.++|.+++. ..+|+|+|+||+|.+.... ...+..
T Consensus 291 ------------------~~v~~vL~el~~------------------------~~~p~i~v~NKiD~~~~~~~~~~~~~ 328 (411)
T COG2262 291 ------------------EAVEDVLAEIGA------------------------DEIPIILVLNKIDLLEDEEILAELER 328 (411)
T ss_pred ------------------HHHHHHHHHcCC------------------------CCCCEEEEEecccccCchhhhhhhhh
Confidence 234455554432 1379999999999885554 344443
Q ss_pred C-CCEEEecchhccchHHHHHHHHHHhCc
Q 015822 262 Q-PNSVVISCNLKLNLDRLLARMWEEMGL 289 (399)
Q Consensus 262 ~-~~~i~vSa~~~~gl~~L~~~i~~~l~~ 289 (399)
. +..|+|||.++.|++.|.+.|.+.+..
T Consensus 329 ~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 329 GSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 3 358999999999999999999998863
No 39
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1e-22 Score=203.67 Aligned_cols=164 Identities=25% Similarity=0.399 Sum_probs=123.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC-EeecccCccccccccccCcccchhhccccCChh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
.-|||||+||||||||||+|++..+.|++|||||+.|+.|.+.+.+ .++.++||||+.++++.+.+++.+++..++.+|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 4799999999999999999999988899999999999999999975 569999999999888777777788888889999
Q ss_pred hhHHHHhcCCcH--HHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 142 IVLMVLDASKSE--GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 142 ~il~v~d~~~~~--~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
++++++|.+... ...+ ....+++++...
T Consensus 240 vlL~VVD~s~~~~~d~~e--------------------------------------------~~~~l~~eL~~~------ 269 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVE--------------------------------------------NARIIINELEKY------ 269 (390)
T ss_pred EEEEEeccCcccccChHH--------------------------------------------HHHHHHHHHHhh------
Confidence 999999876210 0001 111111111100
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhH----HHHHcC----CCEEEecchhccchHHHHHHHHHHhCc
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLARQ----PNSVVISCNLKLNLDRLLARMWEEMGL 289 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~----~~l~~~----~~~i~vSa~~~~gl~~L~~~i~~~l~~ 289 (399)
......+|.++|+||+|+....++ ..+.+. ..++++||+++.|+++|++.|.+.+..
T Consensus 270 -------------~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 270 -------------SPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred -------------hhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 000123799999999999755432 222221 258999999999999999999987753
No 40
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.88 E-value=2.5e-22 Score=185.88 Aligned_cols=160 Identities=23% Similarity=0.278 Sum_probs=115.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+.... ......+++.+
T Consensus 21 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~ 86 (216)
T TIGR00960 21 NLNFHITK--GEMVFLVGHSGAGKSTFLKLILGIEKP-----------TRGKIRFNGQDLTRLRGREI-PFLRRHIGMVF 86 (216)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEehhhcChhHH-HHHHHhceEEe
Confidence 67888887 779999999999999999999998765 79999999987753321110 01123456666
Q ss_pred hhccccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+.... .......+.+.+.++.+|+ ..++.+..||+||+||++++ +++||||
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 166 (216)
T TIGR00960 87 QDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT 166 (216)
T ss_pred cCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 65544443 3333332221 1222334567889999998 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHHHH---Hhhh-CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQILH---EYKI-HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll~---~l~~-~~~~v~vthd~~~ 225 (399)
++||......+++ .+.. ..+++++|||...
T Consensus 167 ~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 167 GNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9999986555544 4432 3489999999764
No 41
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.3e-22 Score=181.75 Aligned_cols=165 Identities=19% Similarity=0.161 Sum_probs=127.9
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecc--cCccccccccccCcc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL--LDLPGIIEGASEGKG 128 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~--iD~~Gl~~~~~~~~~ 128 (399)
.++++++.+ +...||+||+||||||||++|......+. ++ ...|.+.++|.+|.- +|...+ +..+|
T Consensus 24 ~~i~l~i~~--~~VTAlIGPSGcGKST~LR~lNRmndl~~---~~---r~~G~v~~~g~ni~~~~~d~~~l----Rr~vG 91 (253)
T COG1117 24 KDINLDIPK--NKVTALIGPSGCGKSTLLRCLNRMNDLIP---GA---RVEGEVLLDGKNIYDPKVDVVEL----RRRVG 91 (253)
T ss_pred ccCceeccC--CceEEEECCCCcCHHHHHHHHHhhcccCc---Cc---eEEEEEEECCeeccCCCCCHHHH----HHHhe
Confidence 378899998 66999999999999999999998864422 11 267999999998754 344433 45688
Q ss_pred cchhhccccCC--hhhhHHHHhcCC--cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------e
Q 015822 129 RGRQVIAVSKS--SDIVLMVLDASK--SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 129 ~~~q~~~~~~~--~d~il~v~d~~~--~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
+++|....++- .|.+.+.....+ .....+.++..|....+ ++++.+..|||||+||++|| |
T Consensus 92 MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVl 171 (253)
T COG1117 92 MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVL 171 (253)
T ss_pred eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEE
Confidence 99998777764 566666554433 23344567777777665 68888999999999999998 9
Q ss_pred eeccCCCCCCHH---HHHHHHHHhhhCCcEEEEcCCCCHHH
Q 015822 190 NSTLPLTHVDEK---LCYQILHEYKIHNAEVLFREDATVDD 227 (399)
Q Consensus 190 i~DEpts~LD~~---~v~~ll~~l~~~~~~v~vthd~~~~~ 227 (399)
++|||||+||+- .+++++.+++..-|+++|||++....
T Consensus 172 LmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAa 212 (253)
T COG1117 172 LMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAA 212 (253)
T ss_pred EecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHH
Confidence 999999999987 57888888887779999999987654
No 42
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.5e-22 Score=187.34 Aligned_cols=173 Identities=24% Similarity=0.231 Sum_probs=126.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecc-cCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~-iD~~Gl~~~~~~~~~~~ 130 (399)
+++|.+.+ |+.++|+|+||||||||++.|+|...| .+|.+.++|.++.. .++. ..+..+|++
T Consensus 22 ~v~~~i~~--Ge~~~i~G~nGsGKSTL~~~l~GLl~p-----------~~G~v~~~g~~~~~~~~~~----~~~~~vG~V 84 (235)
T COG1122 22 DVSLEIEK--GERVLLIGPNGSGKSTLLKLLNGLLKP-----------TSGEVLVDGLDTSSEKSLL----ELRQKVGLV 84 (235)
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHcCcCcC-----------CCCEEEECCeeccchhhHH----HhhcceEEE
Confidence 67888888 779999999999999999999999876 78999999988753 2221 223446666
Q ss_pred hhhccccCC-h---hhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIAVSKS-S---DIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~~~~~-~---d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|.....-- . |-+.+.... ....+...++.+.|+.+|+ ..++++..|||||+||++|| +++||
T Consensus 85 fQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE 164 (235)
T COG1122 85 FQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE 164 (235)
T ss_pred EECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC
Confidence 666532111 1 112222111 1233456778999999999 78999999999999999999 99999
Q ss_pred CCCCCCHHHHHH---HHHHhhhC--CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 194 PLTHVDEKLCYQ---ILHEYKIH--NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 194 pts~LD~~~v~~---ll~~l~~~--~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||++||+....+ ++..+... .++|++|||+.... .+...++++++.-+
T Consensus 165 Pta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~---------~~ad~v~vl~~G~i 217 (235)
T COG1122 165 PTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVL---------EYADRVVVLDDGKI 217 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHH---------hhCCEEEEEECCEE
Confidence 999999985544 55555544 38999999976533 24577888888544
No 43
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.88 E-value=1.1e-22 Score=188.32 Aligned_cols=163 Identities=23% Similarity=0.276 Sum_probs=114.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...........+++.+
T Consensus 22 ~~s~~i~~--G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 88 (218)
T cd03255 22 GVSLSIEK--GEFVAIVGPSGSGKSTLLNILGGLDRP-----------TSGEVRVDGTDISKLSEKELAAFRRRHIGFVF 88 (218)
T ss_pred eeEEEEcC--CCEEEEEcCCCCCHHHHHHHHhCCcCC-----------CceeEEECCEehhhcchhHHHHHHhhcEEEEe
Confidence 67888887 779999999999999999999999765 89999999988754332111111123455555
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.+.++.+|+ .+++++..||+||+||++++ +++||||
T Consensus 89 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (218)
T cd03255 89 QSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPT 168 (218)
T ss_pred eccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCc
Confidence 55444433 23333322111 112234567888999998 56888999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCHHH
Q 015822 196 THVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDD 227 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~~~ 227 (399)
++||+..... ++..+.. ..+++++||+....+
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 169 GNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 9999985444 4555543 348999999976543
No 44
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=1.9e-22 Score=199.88 Aligned_cols=176 Identities=14% Similarity=0.142 Sum_probs=131.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ +.|.+.++|.++.-.+...+.......+++.+
T Consensus 11 ~vs~~i~~--Gei~~l~G~sGsGKSTLLr~L~Gl~~p-----------~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~ 77 (363)
T TIGR01186 11 DADLAIAK--GEIFVIMGLSGSGKSTTVRMLNRLIEP-----------TAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77 (363)
T ss_pred eeEEEEcC--CCEEEEECCCCChHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHHHHHHhCcEEEEE
Confidence 78888888 789999999999999999999999866 89999999998876554333222245678888
Q ss_pred hhccccCCh---hhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+++. +.+.+.... .......+++.+.|+.+|+ ..++++..||+||+||++|| +++||||
T Consensus 78 Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 877666653 334333222 1223345678889999999 68999999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCHH-HHHHHHhhccccccEEEEEecCCC
Q 015822 196 THVDEKLCYQILHEY---KI--HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 196 s~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~~-~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||+.....+.+.+ .. ..|+|++|||.... .+ ...+++++..-+
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~----------~drI~vl~~G~i 208 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI----------GDRIVIMKAGEI 208 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh----------CCEEEEEeCCEE
Confidence 999998655555444 32 35999999998653 32 355667765443
No 45
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=2.1e-22 Score=183.70 Aligned_cols=160 Identities=21% Similarity=0.227 Sum_probs=123.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|+|.+ |+.++|+|++|+|||||++++.|...| ..|.|.+.|.++.-+.-..+. ......|+.+
T Consensus 26 ~v~l~V~~--Gei~~iiGgSGsGKStlLr~I~Gll~P-----------~~GeI~i~G~~i~~ls~~~~~-~ir~r~GvlF 91 (263)
T COG1127 26 GVDLDVPR--GEILAILGGSGSGKSTLLRLILGLLRP-----------DKGEILIDGEDIPQLSEEELY-EIRKRMGVLF 91 (263)
T ss_pred CceeeecC--CcEEEEECCCCcCHHHHHHHHhccCCC-----------CCCeEEEcCcchhccCHHHHH-HHHhheeEEe
Confidence 88999999 779999999999999999999999876 999999999887654433322 2245678888
Q ss_pred hhccccCChhhhHHH---HhcC---CcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeecc
Q 015822 132 QVIAVSKSSDIVLMV---LDAS---KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 132 q~~~~~~~~d~il~v---~d~~---~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
|...++...++...| +... ......+.+..-|+.+|+ ..+++|.+||||+++|+++| +++||
T Consensus 92 Q~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DE 171 (263)
T COG1127 92 QQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE 171 (263)
T ss_pred eccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecC
Confidence 887777665444333 2221 122334456677888999 37899999999999999998 89999
Q ss_pred CCCCCCHH---HHHHHHHHhh--hCCcEEEEcCCCCH
Q 015822 194 PLTHVDEK---LCYQILHEYK--IHNAEVLFREDATV 225 (399)
Q Consensus 194 pts~LD~~---~v~~ll~~l~--~~~~~v~vthd~~~ 225 (399)
||+|||+- .+.+++..++ +.-|+++||||+..
T Consensus 172 PtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s 208 (263)
T COG1127 172 PTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS 208 (263)
T ss_pred CCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH
Confidence 99999986 4666777776 45699999999654
No 46
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.88 E-value=3.9e-22 Score=196.53 Aligned_cols=176 Identities=18% Similarity=0.190 Sum_probs=128.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|+||||||||+++|+|...| ++|.+.++|.++.-++...+. ..+..+++.+
T Consensus 23 ~vsl~i~~--Gei~gIiG~sGaGKSTLlr~I~gl~~p-----------~~G~I~i~G~~i~~~~~~~l~-~~r~~Ig~v~ 88 (343)
T TIGR02314 23 NVSLHVPA--GQIYGVIGASGAGKSTLIRCVNLLERP-----------TSGSVIVDGQDLTTLSNSELT-KARRQIGMIF 88 (343)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHHH-HHhcCEEEEE
Confidence 77888888 779999999999999999999999866 899999999987654322221 1244678877
Q ss_pred hhccccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+.... .......+++.+.|+.+|+ ..++++.+||+||+||++|| +++||||
T Consensus 89 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt 168 (343)
T TIGR02314 89 QHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 77665544 3444333221 2223345568889999999 67899999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHH---hhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 196 THVDEKLCYQILHE---YKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 196 s~LD~~~v~~ll~~---l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||+.....+++. +.. ..++|++||++.... .....+++++..-+
T Consensus 169 s~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~---------~~~d~v~vl~~G~i 219 (343)
T TIGR02314 169 SALDPATTQSILELLKEINRRLGLTILLITHEMDVVK---------RICDCVAVISNGEL 219 (343)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH---------HhCCEEEEEECCEE
Confidence 99999865555444 432 348999999976542 12355666665433
No 47
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.3e-22 Score=197.54 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=127.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|||||||||||++|+|...+ .+|.|.++|.++.-+. .....+++.+
T Consensus 22 ~vsl~i~~--Ge~~~llG~sGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~~~~------~~~r~ig~v~ 82 (356)
T PRK11650 22 GIDLDVAD--GEFIVLVGPSGCGKSTLLRMVAGLERI-----------TSGEIWIGGRVVNELE------PADRDIAMVF 82 (356)
T ss_pred eeeEEEcC--CCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCCCC------HHHCCEEEEe
Confidence 67888888 779999999999999999999999866 8999999999875322 1235678888
Q ss_pred hhccccCChhh---hHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDI---VLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~---il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+++..+ +.+..... ......+.+.+.|+.+|+ .+++++.+||+||+||++|| +++||||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 88777766444 33333221 222334568889999999 78899999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||......+ ++.+.. ..++|++|||..... .....++++++.-+
T Consensus 163 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~---------~l~D~i~vl~~G~i 213 (356)
T PRK11650 163 SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAM---------TLADRVVVMNGGVA 213 (356)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH---------HhCCEEEEEeCCEE
Confidence 99998855544 444432 348999999975432 12356777776544
No 48
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.8e-22 Score=185.78 Aligned_cols=160 Identities=24% Similarity=0.234 Sum_probs=114.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+.... ...+..+++.+
T Consensus 18 ~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~v~ 83 (235)
T cd03261 18 GVDLDVRR--GEILAIIGPSGSGKSTLLRLIVGLLRP-----------DSGEVLIDGEDISGLSEAEL-YRLRRRMGMLF 83 (235)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccChhhH-HHHhcceEEEc
Confidence 77888888 789999999999999999999999765 89999999988754332000 11233466666
Q ss_pred hhccccCCh---hhhHHHHhc---CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIAVSKSS---DIVLMVLDA---SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~---~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|....+... +.+.+.... .......+.+.+.|+.+++ ..++++..||+||+||+.|+ +++|||
T Consensus 84 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 163 (235)
T cd03261 84 QSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEP 163 (235)
T ss_pred cCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 655444432 333322211 1122234567788999998 56888999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~ 225 (399)
|++||......+ ++++.. ..++|++|||...
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~ 199 (235)
T cd03261 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT 199 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 999999855554 444433 3489999999764
No 49
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.4e-22 Score=203.90 Aligned_cols=162 Identities=31% Similarity=0.477 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC-CEeecccCccccccccccCcccchhhccccCChh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
..|+|||.||||||||||+|++..+.|++|||||++|+.|.+.++ +..+.++|+||++.+++.+.+++.+++..++.++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 379999999999999999999999889999999999999999997 7899999999999888888888889888888999
Q ss_pred hhHHHHhcCCc-----HHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcE
Q 015822 142 IVLMVLDASKS-----EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (399)
Q Consensus 142 ~il~v~d~~~~-----~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~ 216 (399)
++++|+|.+.. ..+...+.++|..+.
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~------------------------------------------------- 269 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYN------------------------------------------------- 269 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhc-------------------------------------------------
Confidence 99999998642 122222222222110
Q ss_pred EEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh-hhHHHHHcC--CCEEEecchhccchHHHHHHHHHHhCce
Q 015822 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMGLV 290 (399)
Q Consensus 217 v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-~~~~~l~~~--~~~i~vSa~~~~gl~~L~~~i~~~l~~i 290 (399)
.....+|.++|+||+|+... +.++.+.+. .+++++||.++.|+++|++.+.+.+...
T Consensus 270 -----------------~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 270 -----------------PRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred -----------------hhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 01124799999999998533 233444321 3589999999999999999998877544
No 50
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.88 E-value=5.6e-22 Score=183.16 Aligned_cols=161 Identities=19% Similarity=0.219 Sum_probs=114.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-++.... ......+++.
T Consensus 19 ~~is~~i~~--G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~ 84 (214)
T TIGR02673 19 HDVSLHIRK--GEFLFLTGPSGAGKTTLLKLLYGALTP-----------SRGQVRIAGEDVNRLRGRQL-PLLRRRIGVV 84 (214)
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHH-HHHHhheEEE
Confidence 377888888 779999999999999999999998755 79999999988754321110 0112345565
Q ss_pred hhhccccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .+.+.+.... .......+.+.+.++.+++ ..++.+..||+||+||++++ +++|||
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 85 FQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred ecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 555444433 2333322211 1222334567888999998 56788999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQI---LHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~ 225 (399)
|++||......+ ++++.. ..+++++||+...
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 199 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL 199 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 999999865544 444433 3589999999754
No 51
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=4.7e-22 Score=192.29 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=130.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+||||||||||+++|+|...| ++|.+.++|.++.-- .......+|+.+
T Consensus 23 ~vs~~i~~--Gei~gllG~NGAGKTTllk~l~gl~~p-----------~~G~i~i~G~~~~~~-----~~~~~~~igy~~ 84 (293)
T COG1131 23 GVSFEVEP--GEIFGLLGPNGAGKTTLLKILAGLLKP-----------TSGEILVLGYDVVKE-----PAKVRRRIGYVP 84 (293)
T ss_pred ceeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEEcCEeCccC-----HHHHHhheEEEc
Confidence 78899988 779999999999999999999999866 899999999876321 112334567777
Q ss_pred hhccccCC---hhhhHHHHhcCCc--HHHHHHHHHHHHHcCCc--ccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKS--EGHRQILTKELEAVGLR--LNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~--~~~~~~i~~~L~~~gi~--~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++. .+.+-+....... ....+.+.++|+.+++. .++++..||+|||||+.|| +++||||
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 66554444 4445454444432 24456899999999993 4788999999999999998 9999999
Q ss_pred CCCCHHH---HHHHHHHhhhCC--cEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCC
Q 015822 196 THVDEKL---CYQILHEYKIHN--AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (399)
Q Consensus 196 s~LD~~~---v~~ll~~l~~~~--~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~ 252 (399)
+|||+.. +.++++.+...+ +++++||.+...+. ....++++++.-+..
T Consensus 165 ~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~---------~~d~v~il~~G~~~~ 217 (293)
T COG1131 165 SGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE---------LCDRVIILNDGKIIA 217 (293)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH---------hCCEEEEEeCCEEEE
Confidence 9999984 555666666544 89999999765442 146788888776553
No 52
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.88 E-value=2.1e-22 Score=197.50 Aligned_cols=160 Identities=31% Similarity=0.487 Sum_probs=124.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC-EeecccCccccccccccCcccchhhccccCCh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
-..|+|||.||||||||||+|++..+.|++|||||+.|+.|.+.+++ .++.++|+||+.++++.+.++..+++..++.+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 35799999999999999999999988899999999999999999987 89999999999988888778888888888889
Q ss_pred hhhHHHHhcCCc-----HHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCc
Q 015822 141 DIVLMVLDASKS-----EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (399)
Q Consensus 141 d~il~v~d~~~~-----~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~ 215 (399)
+++++|+|.+.. .++...+.++|.. +.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~--------------------------------------------~~---- 268 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKK--------------------------------------------YS---- 268 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHH--------------------------------------------hh----
Confidence 999999998643 1111111111111 00
Q ss_pred EEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHH----HHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK----LAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 216 ~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~----l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.....+|.++|+||+|+......+. +.+ ...++++||+++.|+++|++.+.+.|
T Consensus 269 ------------------~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 269 ------------------PELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ------------------hhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 0112379999999999976543322 221 13589999999999999999998765
No 53
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=7.3e-23 Score=202.41 Aligned_cols=193 Identities=27% Similarity=0.373 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEE
Q 015822 26 HLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH 105 (399)
Q Consensus 26 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~ 105 (399)
..+.+++++++++++++...+.+..+.. ...+.+..+|+|+|.||||||||||+|+|....++++||||+||..+.+.
T Consensus 155 ~~~~i~~ri~~l~~~L~~~~~~~~~~r~--~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~ 232 (351)
T TIGR03156 155 DRRLIRERIAQLKKELEKVEKQRERQRR--RRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLD 232 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEE
Confidence 3455677777777766554332211100 11112357999999999999999999999987889999999999999999
Q ss_pred E-CCEeecccCcccccccc-ccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHh
Q 015822 106 Y-NDTKIQLLDLPGIIEGA-SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKK 183 (399)
Q Consensus 106 ~-~g~~i~~iD~~Gl~~~~-~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kq 183 (399)
+ +|.++.++||||+.... ..-.......+..+.++|++++|+|++.+....+ +.
T Consensus 233 ~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~-~~----------------------- 288 (351)
T TIGR03156 233 LPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQ-IE----------------------- 288 (351)
T ss_pred eCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHH-HH-----------------------
Confidence 9 67899999999985421 1111112233445678999999999876532211 10
Q ss_pred hcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHc-C
Q 015822 184 TGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR-Q 262 (399)
Q Consensus 184 r~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~-~ 262 (399)
.+..+++.+. ...+|+++|+||+|+........+.. .
T Consensus 289 ------------------~~~~~L~~l~------------------------~~~~piIlV~NK~Dl~~~~~v~~~~~~~ 326 (351)
T TIGR03156 289 ------------------AVEKVLEELG------------------------AEDIPQLLVYNKIDLLDEPRIERLEEGY 326 (351)
T ss_pred ------------------HHHHHHHHhc------------------------cCCCCEEEEEEeecCCChHhHHHHHhCC
Confidence 1111222111 11369999999999976544443322 2
Q ss_pred CCEEEecchhccchHHHHHHHHHH
Q 015822 263 PNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 263 ~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
++++++||+++.|+++|.+.|.+.
T Consensus 327 ~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 327 PEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCEEEEEccCCCCHHHHHHHHHhh
Confidence 458999999999999999988764
No 54
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.87 E-value=3.2e-22 Score=185.65 Aligned_cols=162 Identities=23% Similarity=0.270 Sum_probs=114.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+...+.......+++.+
T Consensus 23 ~isl~i~~--G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~ 89 (221)
T TIGR02211 23 GVSLSIGK--GEIVAIVGSSGSGKSTLLHLLGGLDNP-----------TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIY 89 (221)
T ss_pred eeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEe
Confidence 67888888 779999999999999999999999765 89999999988754332111000113456666
Q ss_pred hhccccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .|.+.+... ........+.+.++++.+|+ .+++.+..||+||+||++++ +++||||
T Consensus 90 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 169 (221)
T TIGR02211 90 QFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPT 169 (221)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 65444433 333332211 11122234567788999998 57888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHH---Hhhh--CCcEEEEcCCCCHH
Q 015822 196 THVDEKLCYQILH---EYKI--HNAEVLFREDATVD 226 (399)
Q Consensus 196 s~LD~~~v~~ll~---~l~~--~~~~v~vthd~~~~ 226 (399)
++||......+.+ .+.. ..+++++|||....
T Consensus 170 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 170 GNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999986555444 4432 34899999997543
No 55
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2.5e-22 Score=189.22 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=135.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+.+|++.. |++.+|.|-+|||||||+++|.+...| +.|.+.++|.++.-++.+.++...+..+++++
T Consensus 46 ~~sl~v~~--GeIfViMGLSGSGKSTLvR~~NrLiep-----------t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVF 112 (386)
T COG4175 46 DASLDVEE--GEIFVIMGLSGSGKSTLVRLLNRLIEP-----------TRGEILVDGKDIAKLSAAELRELRRKKISMVF 112 (386)
T ss_pred cceeeecC--CeEEEEEecCCCCHHHHHHHHhccCCC-----------CCceEEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence 77888887 889999999999999999999999755 99999999999988888888877788899999
Q ss_pred hhccccCChhhhHHHHhc-----CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMVLDA-----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~-----~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|...++++..++-.+..+ -...+..++..+.|+.+|+ +.+++|.+||||++||+++| +++|||+
T Consensus 113 Q~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 999999997777665432 2345567788999999999 88999999999999999998 8999999
Q ss_pred CCCCHHH---HHHHHHHhh--hCCcEEEEcCCCCHH
Q 015822 196 THVDEKL---CYQILHEYK--IHNAEVLFREDATVD 226 (399)
Q Consensus 196 s~LD~~~---v~~ll~~l~--~~~~~v~vthd~~~~ 226 (399)
|+||+-. ...-|-+|+ +..|+++||||++..
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEA 228 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEA 228 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHH
Confidence 9999863 333333333 567999999998653
No 56
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.7e-22 Score=185.64 Aligned_cols=162 Identities=24% Similarity=0.260 Sum_probs=115.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+...........+++.+
T Consensus 27 ~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~ 93 (233)
T PRK11629 27 NVSFSIGE--GEMMAIVGSSGSGKSTLLHLLGGLDTP-----------TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIY 93 (233)
T ss_pred eeEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCHHHHHHHHhccEEEEe
Confidence 67888888 779999999999999999999998755 89999999988754432111101113456666
Q ss_pred hhccccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+... ........+.+.+.|+.+|+ ..++.+..||+||+||++++ +++||||
T Consensus 94 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 173 (233)
T PRK11629 94 QFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPT 173 (233)
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 65444433 233322211 11222334567889999998 56788999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHH
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 226 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~ 226 (399)
++||......+ ++.+.. ..++|++||+....
T Consensus 174 ~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 174 GNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA 209 (233)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999865544 444432 34899999997543
No 57
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.6e-22 Score=195.27 Aligned_cols=172 Identities=19% Similarity=0.181 Sum_probs=129.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ++|.|.++|.++.-. + .....+++.+
T Consensus 24 ~isl~i~~--Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~~~--~----~~~r~ig~vf 84 (351)
T PRK11432 24 NLNLTIKQ--GTMVTLLGPSGCGKTTVLRLVAGLEKP-----------TEGQIFIDGEDVTHR--S----IQQRDICMVF 84 (351)
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCCC--C----HHHCCEEEEe
Confidence 67888887 779999999999999999999999866 899999999887532 2 1235678888
Q ss_pred hhccccCChhh---hHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDI---VLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~---il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+++.++ +.+.+.. ....+..+++.+.++.+++ ..++++..||+||+||+++| +++||||
T Consensus 85 Q~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~ 164 (351)
T PRK11432 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL 164 (351)
T ss_pred CCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 88777776444 4443332 1223345678889999999 67899999999999999998 9999999
Q ss_pred CCCCHHHHHHHHH---Hhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~~ll~---~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||.....++.. .+.. ..++|++|||.....- ....++|++..-+.
T Consensus 165 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~---------laD~i~vm~~G~i~ 216 (351)
T PRK11432 165 SNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFA---------VSDTVIVMNKGKIM 216 (351)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH---------hCCEEEEEECCEEE
Confidence 9999985554444 4432 3489999999765321 23567777765443
No 58
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=8.9e-23 Score=201.64 Aligned_cols=155 Identities=25% Similarity=0.311 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCcccccccccc--CcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE--GKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~--~~~~~~q~~~~~~~ 139 (399)
..|||||+||+|||||||.|+|.. +.|+++||||||+..|.+.|.|.++.++||+|+...... ...+..|....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 379999999999999999999988 679999999999999999999999999999999865422 22334577778899
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
||++++|+|+.......+ +.+.++|+
T Consensus 84 ADvilfvVD~~~Git~~D-------------------------------------------~~ia~~Lr----------- 109 (444)
T COG1160 84 ADVILFVVDGREGITPAD-------------------------------------------EEIAKILR----------- 109 (444)
T ss_pred CCEEEEEEeCCCCCCHHH-------------------------------------------HHHHHHHH-----------
Confidence 999999999865322111 11222222
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh-HHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
+..+|+++|+||+|-...+. ..++.+ +.++++|||..|.|+++|++++.+.+
T Consensus 110 ----------------~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 110 ----------------RSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ----------------hcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 12389999999999874433 233332 35689999999999999999999887
No 59
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.87 E-value=9.2e-22 Score=191.36 Aligned_cols=173 Identities=15% Similarity=0.134 Sum_probs=123.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+||||||||||+++|+|...| .+|.+.++|.++.. + + ......+++.+
T Consensus 11 ~vs~~i~~--Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~-~-~---~~~~~~i~~~~ 72 (302)
T TIGR01188 11 GVNFKVRE--GEVFGFLGPNGAGKTTTIRMLTTLLRP-----------TSGTARVAGYDVVR-E-P---RKVRRSIGIVP 72 (302)
T ss_pred eeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccc-C-H---HHHHhhcEEec
Confidence 67888888 779999999999999999999999765 89999999987642 1 1 11233466666
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.+.|+.+++ ..++++..||+||+||+++| +++||||
T Consensus 73 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 66544444 33333322211 122234567889999999 67889999999999999998 9999999
Q ss_pred CCCCHHHHH---HHHHHhhhC-CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCY---QILHEYKIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~---~ll~~l~~~-~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||+.... ++++.+... .+++++||+.....- ....++++++.-+.
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~---------~~d~v~~l~~G~i~ 203 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADK---------LCDRIAIIDHGRII 203 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH---------hCCEEEEEECCEEE
Confidence 999998544 445555433 489999999764321 23556677665443
No 60
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.87 E-value=1.2e-21 Score=194.21 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=129.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.. |++++|+|||||||||||++|+|...+ +.|.+.++|.++.-. + .....+++.+
T Consensus 22 ~vs~~i~~--Ge~~~l~GpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~~--~----~~~r~ig~v~ 82 (353)
T TIGR03265 22 DISLSVKK--GEFVCLLGPSGCGKTTLLRIIAGLERQ-----------TAGTIYQGGRDITRL--P----PQKRDYGIVF 82 (353)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECCCC--C----HHHCCEEEEe
Confidence 67788877 779999999999999999999999866 899999999887532 2 1245678888
Q ss_pred hhccccCChhhhHHH---HhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMV---LDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v---~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+++.++...+ .... ...+...++.+.++.+++ .+++++..||+||+||+++| +++|||+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 887777765444333 2221 123345678899999999 78899999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||......+ ++.+.. ..++|++|||...... ....++++++.-+.
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~---------l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALS---------MADRIVVMNHGVIE 214 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99998854444 444432 3489999999864321 13567778776554
No 61
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.6e-21 Score=180.12 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=112.9
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.-... ....+++.
T Consensus 17 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~------~~~~i~~v 77 (213)
T cd03259 17 DDLSLTVEP--GEFLALLGPSGCGKTTLLRLIAGLERP-----------DSGEILIDGRDVTGVPP------ERRNIGMV 77 (213)
T ss_pred cceeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcCcCch------hhccEEEE
Confidence 377888888 779999999999999999999998765 89999999987643211 12345555
Q ss_pred hhhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .|.+.+..... ......+.+.+.++.+++ ..++++..||+||+||+.++ +++|||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 665444433 33333222211 122234567788999998 56888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhhh--CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQILH---EYKI--HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~ll~---~l~~--~~~~v~vthd~~~ 225 (399)
|++||......+++ ++.. ..+++++|||...
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 193 (213)
T cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEE 193 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 99999986555544 4432 3489999999764
No 62
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=1.3e-21 Score=180.39 Aligned_cols=157 Identities=21% Similarity=0.207 Sum_probs=111.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.. .....+++.+
T Consensus 19 ~vs~~i~~--G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~~ 81 (211)
T cd03225 19 DISLTIKK--GEFVLIVGPNGSGKSTLLRLLNGLLGP-----------TSGEVLVDGKDLTKLSLK----ELRRKVGLVF 81 (211)
T ss_pred ceEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEcccCCHH----HHHhhceEEe
Confidence 77888887 789999999999999999999999765 899999999877533211 1123455555
Q ss_pred hhcc-ccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIA-VSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~-~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|... .+.. .+.+.+.... .........+.+.++.+++ .+++++..||+||+||++++ +++|||
T Consensus 82 q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 161 (211)
T cd03225 82 QNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEP 161 (211)
T ss_pred cChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5432 1222 3333222111 1122234467788999998 57889999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhhh-CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQILH---EYKI-HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~ll~---~l~~-~~~~v~vthd~~~ 225 (399)
|++||......+++ ++.. ..+++++|||...
T Consensus 162 t~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~ 196 (211)
T cd03225 162 TAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL 196 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999986555544 4433 3489999999754
No 63
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.87 E-value=5.8e-22 Score=184.90 Aligned_cols=161 Identities=21% Similarity=0.250 Sum_probs=114.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+...........+++.+
T Consensus 28 ~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 94 (228)
T PRK10584 28 GVELVVKR--GETIALIGESGSGKSTLLAILAGLDDG-----------SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVF 94 (228)
T ss_pred ccEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeeEEECCEEcccCCHHHHHHHHhheEEEEE
Confidence 67888888 779999999999999999999999765 89999999988754432111111123455555
Q ss_pred hhccccCC---hhhhHHHH--hcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~--d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .|.+.+.. .........+.+.+.|+.+++ .+++.+..||+||+||++++ +++||||
T Consensus 95 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt 174 (228)
T PRK10584 95 QSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174 (228)
T ss_pred cccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 55444333 23333221 111222334567888999998 66888999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQ---ILHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~ 225 (399)
++||...... +++++.. ..+++++|||...
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 209 (228)
T PRK10584 175 GNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999985544 4544432 3489999999754
No 64
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.87 E-value=1.4e-21 Score=193.72 Aligned_cols=172 Identities=19% Similarity=0.236 Sum_probs=127.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ++|.|.++|.++...+ .....+++.+
T Consensus 20 ~isl~i~~--Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~~~------~~~r~i~~v~ 80 (353)
T PRK10851 20 DISLDIPS--GQMVALLGPSGSGKTTLLRIIAGLEHQ-----------TSGHIRFHGTDVSRLH------ARDRKVGFVF 80 (353)
T ss_pred EeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCC------HHHCCEEEEe
Confidence 67888887 789999999999999999999999765 8999999999875332 1234577888
Q ss_pred hhccccCChhhh---HHHHhc------CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKSSDIV---LMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~~d~i---l~v~d~------~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....++..++. .+.... .......+++.+.|+.+++ ..++++..||+||+||++|| +++
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 876666654443 332221 1122334578889999999 67899999999999999998 999
Q ss_pred ccCCCCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 192 TLPLTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 192 DEpts~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
||||++||...... +++++.. ..+++++|||.....- ....++++++.-+.
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~---------~~Dri~vl~~G~i~ 216 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAME---------VADRVVVMSQGNIE 216 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999999985544 4444443 3489999999865321 23567777765543
No 65
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.87 E-value=1.4e-21 Score=190.37 Aligned_cols=173 Identities=17% Similarity=0.134 Sum_probs=125.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+||||||||||+++|+|...+ ++|.+.++|.++.... ......+++.+
T Consensus 25 ~vsl~i~~--Gei~gllGpNGaGKSTLl~~l~Gl~~p-----------~~G~v~i~G~~~~~~~-----~~~~~~ig~v~ 86 (306)
T PRK13537 25 GLSFHVQR--GECFGLLGPNGAGKTTTLRMLLGLTHP-----------DAGSISLCGEPVPSRA-----RHARQRVGVVP 86 (306)
T ss_pred cceEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEecccch-----HHHHhcEEEEe
Confidence 78899988 779999999999999999999999765 8999999998874321 11234567777
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ........+.++++.+++ ..++++..||+||+||++|| +++||||
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 76554444 33333322222 122234567788899998 67888999999999999998 9999999
Q ss_pred CCCCHHHHH---HHHHHhhhC-CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCY---QILHEYKIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~---~ll~~l~~~-~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||+.... ++++++... .+++++||++...+- ....++++++.-+.
T Consensus 167 ~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~---------~~d~i~il~~G~i~ 217 (306)
T PRK13537 167 TGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAER---------LCDRLCVIEEGRKI 217 (306)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH---------hCCEEEEEECCEEE
Confidence 999998544 455555433 489999999875431 23567777765443
No 66
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.87 E-value=1e-21 Score=180.28 Aligned_cols=163 Identities=19% Similarity=0.164 Sum_probs=114.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++..+............+++.+
T Consensus 16 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 82 (206)
T TIGR03608 16 DLNLTIEK--GKMYAIIGESGSGKSTLLNIIGLLEKF-----------DSGQVYLNGKETPPLNSKKASKFRREKLGYLF 82 (206)
T ss_pred ceEEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccchhhHHHHHHhCeeEEe
Confidence 77888888 789999999999999999999998755 88999999987642211000011223455555
Q ss_pred hhccccCCh---hhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+... +.+.+.... .......+.+.+.++.+|+ .+++.+..||+||+||++++ +++||||
T Consensus 83 q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt 162 (206)
T TIGR03608 83 QNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPT 162 (206)
T ss_pred cchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 554444332 333222111 1122334567888999998 67888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHhh---h-CCcEEEEcCCCCHHH
Q 015822 196 THVDEKLCYQILHEYK---I-HNAEVLFREDATVDD 227 (399)
Q Consensus 196 s~LD~~~v~~ll~~l~---~-~~~~v~vthd~~~~~ 227 (399)
++||......+.+.+. . ..+++++||+....+
T Consensus 163 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 163 GSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK 198 (206)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 9999986555555443 2 348999999976433
No 67
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.87 E-value=1.5e-21 Score=193.84 Aligned_cols=172 Identities=19% Similarity=0.157 Sum_probs=127.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeec--eEEEECCEeecccCccccccccccCccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP--GIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~--G~i~~~g~~i~~iD~~Gl~~~~~~~~~~ 129 (399)
+++|++.. |++++|+|||||||||||++|+|...+ +. |.+.++|.++.-. + .....+++
T Consensus 23 ~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~~~G~i~~~g~~~~~~--~----~~~r~ig~ 83 (362)
T TIGR03258 23 DLSLEIEA--GELLALIGKSGCGKTTLLRAIAGFVKA-----------AGLTGRIAIADRDLTHA--P----PHKRGLAL 83 (362)
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCCEEEEECCEECCCC--C----HHHCCEEE
Confidence 67888887 779999999999999999999999866 77 9999999887422 1 12346788
Q ss_pred chhhccccCChhh---hHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 130 GRQVIAVSKSSDI---VLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 130 ~~q~~~~~~~~d~---il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
.+|....++...+ +.+..... .......++.+.|+.+++ .+++++..||+||+||+++| +++||
T Consensus 84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE 163 (362)
T TIGR03258 84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE 163 (362)
T ss_pred EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8887776666444 33333221 222334568889999999 68999999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhhh---CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 194 PLTHVDEKLCYQILH---EYKI---HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 194 pts~LD~~~v~~ll~---~l~~---~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
||++||.....++.. .+.. ..++|++|||...... ....+++++...+.
T Consensus 164 P~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~---------l~dri~vl~~G~i~ 218 (362)
T TIGR03258 164 PLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT---------LADKAGIMKDGRLA 218 (362)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 999999985554444 4442 2489999999765321 23567888776554
No 68
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.87 E-value=1.6e-21 Score=180.01 Aligned_cols=160 Identities=20% Similarity=0.233 Sum_probs=113.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.... ......+++.+
T Consensus 19 ~~sl~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~v~ 84 (214)
T cd03292 19 GINISISA--GEFVFLVGPSGAGKSTLLKLIYKEELP-----------TSGTIRVNGQDVSDLRGRAI-PYLRRKIGVVF 84 (214)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHH-HHHHHheEEEe
Confidence 67888887 779999999999999999999998755 89999999987754321111 11223456666
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.+.++.+|+ .+++.+..||+||+||++++ +++||||
T Consensus 85 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 164 (214)
T cd03292 85 QDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPT 164 (214)
T ss_pred cCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 65444443 33333322111 122234567788999998 56888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHH---Hhhh-CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQILH---EYKI-HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll~---~l~~-~~~~v~vthd~~~ 225 (399)
++||......+.+ ++.. ..+++++||+...
T Consensus 165 ~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~ 198 (214)
T cd03292 165 GNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL 198 (214)
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999986555444 4432 3489999999754
No 69
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=1.6e-21 Score=192.27 Aligned_cols=181 Identities=17% Similarity=0.112 Sum_probs=127.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|||||||||||++|+|...| ++|.+.++|.++.-.. ......+++.+
T Consensus 59 ~is~~i~~--Gei~gLlGpNGaGKSTLl~~L~Gl~~p-----------~~G~i~i~G~~~~~~~-----~~~~~~ig~v~ 120 (340)
T PRK13536 59 GLSFTVAS--GECFGLLGPNGAGKSTIARMILGMTSP-----------DAGKITVLGVPVPARA-----RLARARIGVVP 120 (340)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CceEEEECCEECCcch-----HHHhccEEEEe
Confidence 78888888 789999999999999999999999765 8999999998864211 12234567766
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.++++.+++ ..++++..||+||+||++|| +++||||
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 66544443 33333222111 112234456788888998 57889999999999999998 9999999
Q ss_pred CCCCHHHH---HHHHHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH
Q 015822 196 THVDEKLC---YQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (399)
Q Consensus 196 s~LD~~~v---~~ll~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l 259 (399)
++||+... .+++.++.. ..+++++||++...+- ....++++++.-+......+.+
T Consensus 201 ~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~---------~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 201 TGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER---------LCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH---------hCCEEEEEECCEEEEEcCHHHH
Confidence 99999854 445555543 3489999999865321 2456777776655433333343
No 70
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=9.3e-22 Score=187.28 Aligned_cols=193 Identities=20% Similarity=0.203 Sum_probs=133.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCccccccccccCccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~ 129 (399)
.|+||++.+ |+++||||.+||||||+.++|+|... +.+ ....|.+.++|.++.-++...+.+-....+++
T Consensus 22 ~~vs~~i~~--GE~lgiVGESGsGKS~~~~aim~llp~~~~-------~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m 92 (316)
T COG0444 22 DGVSFELKK--GEILGIVGESGSGKSVLAKAIMGLLPKPNA-------RIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92 (316)
T ss_pred eceeEEEcC--CcEEEEEcCCCCCHHHHHHHHHhccCCCCC-------eEeeeEEEECCcccccCCHHHHHhhcCceEEE
Confidence 388999999 77999999999999999999999875 311 22678999999986555543222222345666
Q ss_pred chhhcc-ccCC----hhhhHHHHhcC----CcHHHHHHHHHHHHHcCC-----cccccccccchhhHhhcCce-------
Q 015822 130 GRQVIA-VSKS----SDIVLMVLDAS----KSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS------- 188 (399)
Q Consensus 130 ~~q~~~-~~~~----~d~il~v~d~~----~~~~~~~~i~~~L~~~gi-----~~~~~~~~LS~g~kqr~~ia------- 188 (399)
.+|... .+.. -+-+..++... ...+..+++.+.|+.+|| .++.+|.+|||||+||+.||
T Consensus 93 IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 93 IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCC
Confidence 777632 2221 11122222211 223456678999999999 56899999999999999988
Q ss_pred --eeeccCCCCCCHHH---HHHHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHc
Q 015822 189 --FNSTLPLTHVDEKL---CYQILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (399)
Q Consensus 189 --li~DEpts~LD~~~---v~~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~ 261 (399)
|++||||++||... +.++|++++. ..++++||||+.+..- ....|.|+...-++.....+.+.+
T Consensus 173 ~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~---------~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAE---------IADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hcceEEEEECcEEEEeCCHHHHhc
Confidence 99999999999874 5555555653 3489999999986431 235677777665554444444443
No 71
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=1.5e-21 Score=179.27 Aligned_cols=152 Identities=19% Similarity=0.208 Sum_probs=109.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.. ......+++.+
T Consensus 18 ~v~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~-------~~~~~~i~~~~ 77 (205)
T cd03226 18 DLSLDLYA--GEIIALTGKNGAGKTTLAKILAGLIKE-----------SSGSILLNGKPIKA-------KERRKSIGYVM 77 (205)
T ss_pred eeeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEhhh-------HHhhcceEEEe
Confidence 67888888 779999999999999999999998765 89999999987632 01123455555
Q ss_pred hhcc-cc---CChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCC
Q 015822 132 QVIA-VS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (399)
Q Consensus 132 q~~~-~~---~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts 196 (399)
|... .+ .-.+.+.+...... .....+.+.++.+++ .+++++..||+||+||++++ +++||||+
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 155 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELD--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS 155 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcC--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 5421 11 11233322111111 122467888999998 67889999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhhhC-CcEEEEcCCCCH
Q 015822 197 HVDEKLCYQI---LHEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 197 ~LD~~~v~~l---l~~l~~~-~~~v~vthd~~~ 225 (399)
+||+.....+ ++.+... .+++++||+...
T Consensus 156 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 188 (205)
T cd03226 156 GLDYKNMERVGELIRELAAQGKAVIVITHDYEF 188 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9999855544 4444333 489999999764
No 72
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.87 E-value=1.6e-21 Score=182.72 Aligned_cols=174 Identities=21% Similarity=0.242 Sum_probs=120.8
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+.... ...++++.
T Consensus 17 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v 80 (236)
T cd03219 17 DDVSFSVRP--GEIHGLIGPNGAGKTTLFNLISGFLRP-----------TSGSVLFDGEDITGLPPHEI---ARLGIGRT 80 (236)
T ss_pred cCceEEecC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEECCCCCHHHH---HhcCEEEE
Confidence 377888887 789999999999999999999998765 78999999987654332111 12345565
Q ss_pred hhhccccCC---hhhhHHHHhcCC------------cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce-----
Q 015822 131 RQVIAVSKS---SDIVLMVLDASK------------SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----- 188 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~~------------~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia----- 188 (399)
+|....+.. .+.+.+...... .....+.+.+.++.+|+ .+++++..||+||+||++++
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 665444443 233332221111 12234467888999998 57888999999999999998
Q ss_pred ----eeeccCCCCCCHHHHHH---HHHHhhhC-CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 189 ----FNSTLPLTHVDEKLCYQ---ILHEYKIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 189 ----li~DEpts~LD~~~v~~---ll~~l~~~-~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
+++||||++||...... ++..+... .++|++|||.....- ....++++++.-
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~---------~~d~i~~l~~G~ 220 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMS---------LADRVTVLDQGR 220 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH---------hCCEEEEEeCCE
Confidence 99999999999985554 44444423 489999999765321 134566666543
No 73
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.87 E-value=1.6e-21 Score=180.08 Aligned_cols=153 Identities=22% Similarity=0.248 Sum_probs=109.4
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.. ....+++.
T Consensus 16 ~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~---------~~~~i~~v 73 (213)
T cd03235 16 EDVSFEVKP--GEFLAIVGPNGAGKSTLLKAILGLLKP-----------TSGSIRVFGKPLEK---------ERKRIGYV 73 (213)
T ss_pred ecceeEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCccHHH---------HHhheEEe
Confidence 377888888 779999999999999999999999765 89999999976531 12234555
Q ss_pred hhhcccc-----CChhhhHHHHhcC------CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------
Q 015822 131 RQVIAVS-----KSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 131 ~q~~~~~-----~~~d~il~v~d~~------~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia--------- 188 (399)
+|..... .-.+.+.+..... ......+.+.+.|+.+++ ..++++..||+||+||++++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 5543221 1122222211110 112234567888999998 57888999999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHH---HhhhC-CcEEEEcCCCCH
Q 015822 189 FNSTLPLTHVDEKLCYQILH---EYKIH-NAEVLFREDATV 225 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~---~l~~~-~~~v~vthd~~~ 225 (399)
+++||||++||+.....+.+ .+... .++|++|||...
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~ 194 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL 194 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999986555444 44323 489999999764
No 74
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-21 Score=195.78 Aligned_cols=161 Identities=15% Similarity=0.179 Sum_probs=119.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...| ..|.|.++|.++.-.+...+.......+++.+
T Consensus 46 ~isl~i~~--Gei~~LvG~NGsGKSTLLr~I~Gl~~p-----------~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 46 DASLAIEE--GEIFVIMGLSGSGKSTMVRLLNRLIEP-----------TRGQVLIDGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred eEEEEEcC--CCEEEEECCCCchHHHHHHHHHcCCCC-----------CCCEEEECCEECCcCCHHHHHHHHhCCEEEEE
Confidence 77888888 779999999999999999999999765 89999999998765443222111223567777
Q ss_pred hhccccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+.... .......+.+.+.|+.+|+ ..++++..||+||+||++|| +++||||
T Consensus 113 Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 113 QSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 76555544 3444333221 1222334567889999999 67899999999999999998 9999999
Q ss_pred CCCCHHHHHHHH---HHhhh--CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQIL---HEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll---~~l~~--~~~~v~vthd~~~ 225 (399)
++||+.....+. ..+.. ..++|++|||...
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~ 227 (400)
T PRK10070 193 SALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE 227 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence 999998655544 44432 3489999999764
No 75
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.3e-21 Score=185.49 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=115.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+.......+++.
T Consensus 41 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v 107 (269)
T cd03294 41 NDVSLDVRE--GEIFVIMGLSGSGKSTLLRCINRLIEP-----------TSGKVLIDGQDIAAMSRKELRELRRKKISMV 107 (269)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccChhhhhhhhcCcEEEE
Confidence 378888888 779999999999999999999999765 8899999998775433211111112345666
Q ss_pred hhhccccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .+.+.+.... .......+.+.+.|+.+++ .+++.+..||+||+||++|| +++|||
T Consensus 108 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEP 187 (269)
T cd03294 108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187 (269)
T ss_pred ecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 665444433 2333322211 1122234567788999998 57889999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~ 225 (399)
|++||......+ +..+.. ..+++++||+...
T Consensus 188 t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~ 223 (269)
T cd03294 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE 223 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999855544 444432 3589999999754
No 76
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=6.8e-21 Score=202.64 Aligned_cols=145 Identities=18% Similarity=0.225 Sum_probs=104.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC-EeecccCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
+++|.|.+ |+++||+|||||||||||++|+|...| ++|.|.+++ ..+.++
T Consensus 330 ~isl~i~~--Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~~~~~igy~---------------- 380 (638)
T PRK10636 330 SIKLNLVP--GSRIGLLGRNGAGKSTLIKLLAGELAP-----------VSGEIGLAKGIKLGYF---------------- 380 (638)
T ss_pred cceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCCEEEEEe----------------
Confidence 67777777 789999999999999999999998765 889998853 233222
Q ss_pred hhhc-cccC-ChhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCCC
Q 015822 131 RQVI-AVSK-SSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (399)
Q Consensus 131 ~q~~-~~~~-~~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpts 196 (399)
.|.. ..+. ...++..+... .+......+...|..+++ ..++++..|||||+||++|| |++||||+
T Consensus 381 ~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~ 459 (638)
T PRK10636 381 AQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN 459 (638)
T ss_pred cCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 2211 0011 11112112111 122234567889999998 46789999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhh-hCCcEEEEcCCCCHH
Q 015822 197 HVDEKLCYQILHEYK-IHNAEVLFREDATVD 226 (399)
Q Consensus 197 ~LD~~~v~~ll~~l~-~~~~~v~vthd~~~~ 226 (399)
+||......+.+.+. +.+++|++|||....
T Consensus 460 ~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~ 490 (638)
T PRK10636 460 HLDLDMRQALTEALIDFEGALVVVSHDRHLL 490 (638)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 999997777666665 457999999997643
No 77
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.7e-21 Score=180.88 Aligned_cols=152 Identities=22% Similarity=0.198 Sum_probs=111.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++... ...+++.+
T Consensus 22 ~vs~~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~---------~~~i~~v~ 79 (220)
T cd03293 22 DISLSVEE--GEFVALVGPSGCGKSTLLRIIAGLERP-----------TSGEVLVDGEPVTGP---------GPDRGYVF 79 (220)
T ss_pred ceeEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccc---------cCcEEEEe
Confidence 77888888 779999999999999999999998755 799999999876411 22345555
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||+.++ +++||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 54433332 33333322211 122234567889999998 57888999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhh-h-CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQI---LHEYK-I-HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~-~-~~~~v~vthd~~~ 225 (399)
++||......+ ++++. . ..+++++||+...
T Consensus 160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 194 (220)
T cd03293 160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194 (220)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 99999865544 44443 2 3489999999763
No 78
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.3e-21 Score=193.31 Aligned_cols=170 Identities=19% Similarity=0.226 Sum_probs=123.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+|||||||||++|+|...+ .+|.+.++|.++..... ....+++.+
T Consensus 21 ~vsl~i~~--Ge~~~l~G~nGsGKSTLL~~iaGl~~p-----------~~G~I~~~g~~i~~~~~------~~~~i~~v~ 81 (369)
T PRK11000 21 DINLDIHE--GEFVVFVGPSGCGKSTLLRMIAGLEDI-----------TSGDLFIGEKRMNDVPP------AERGVGMVF 81 (369)
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCH------hHCCEEEEe
Confidence 67888887 779999999999999999999999765 89999999988753221 124567777
Q ss_pred hhccccCCh---hhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+... +.+.+.... .......+++.+.|+.+++ .+++++..||+||+||++|| +++||||
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 776655553 333332221 1222334568889999999 67899999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 196 THVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
++||...... +++.+.. ..++|++|||...... ....+++++..-
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~---------~~d~i~vl~~G~ 211 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT---------LADKIVVLDAGR 211 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHH---------hCCEEEEEECCE
Confidence 9999985544 4455432 3489999999764321 134566666543
No 79
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.86 E-value=2.1e-21 Score=193.60 Aligned_cols=172 Identities=18% Similarity=0.173 Sum_probs=127.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ..|.|.++|.++.-. + ....++++.+
T Consensus 32 ~vsl~i~~--Ge~~~LlGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~~~--~----~~~r~ig~vf 92 (375)
T PRK09452 32 NLDLTINN--GEFLTLLGPSGCGKTTVLRLIAGFETP-----------DSGRIMLDGQDITHV--P----AENRHVNTVF 92 (375)
T ss_pred eeEEEEeC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCCC--C----HHHCCEEEEe
Confidence 67788877 779999999999999999999999866 899999999987532 1 1235678888
Q ss_pred hhccccCChhhhHHH---HhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMV---LDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v---~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++...+.-.+ +... ......+.+.+.++.+++ .+++++..||+||+||++|| +++||||
T Consensus 93 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred cCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 887777664444333 2211 122234567888999999 68999999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||......+ ++.+.. ..++|++|||..... .....+++++..-+.
T Consensus 173 s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~---------~laDri~vl~~G~i~ 224 (375)
T PRK09452 173 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEAL---------TMSDRIVVMRDGRIE 224 (375)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH---------HhCCEEEEEECCEEE
Confidence 99999854444 444432 348999999976422 123566777765443
No 80
>PRK10908 cell division protein FtsE; Provisional
Probab=99.86 E-value=2.7e-21 Score=179.77 Aligned_cols=161 Identities=22% Similarity=0.255 Sum_probs=113.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-++.... ......+++.+
T Consensus 20 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~~~ 85 (222)
T PRK10908 20 GVTFHMRP--GEMAFLTGHSGAGKSTLLKLICGIERP-----------SAGKIWFSGHDITRLKNREV-PFLRRQIGMIF 85 (222)
T ss_pred eeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEcccCChhHH-HHHHhheEEEe
Confidence 77888887 779999999999999999999999765 89999999987754321111 01123455666
Q ss_pred hhccccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+... ........+.+.+.|+.+++ .+++.+..||+||+||++++ +++||||
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (222)
T PRK10908 86 QDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165 (222)
T ss_pred cCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 65443333 233322211 11222334457788999998 67888999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCHH
Q 015822 196 THVDEKLCYQ---ILHEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~~ 226 (399)
++||...... ++..+.. ..+++++|||....
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (222)
T PRK10908 166 GNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200 (222)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 9999985444 4444433 34899999997653
No 81
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.86 E-value=2.3e-21 Score=188.65 Aligned_cols=174 Identities=16% Similarity=0.081 Sum_probs=121.7
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+++||+|+||||||||+++|+|...+ .+|.+.++|.++... + ......+++.
T Consensus 21 ~~vsl~i~~--Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~--~---~~~~~~i~~v 82 (303)
T TIGR01288 21 NDLSFTIAR--GECFGLLGPNGAGKSTIARMLLGMISP-----------DRGKITVLGEPVPSR--A---RLARVAIGVV 82 (303)
T ss_pred cceeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccc--H---HHHhhcEEEE
Confidence 378888888 789999999999999999999998765 899999999876421 1 1123446666
Q ss_pred hhhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .+.+.+..... ......+.+.++|+.+++ ..++++..||+||+||+++| +++|||
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 665544433 33333221111 122223456778888998 56888999999999999998 999999
Q ss_pred CCCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 195 LTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 195 ts~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
|++||+..... ++..+.. ..+++++||+.....- ....++++++.-+.
T Consensus 163 t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~---------~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER---------LCDRLCVLESGRKI 214 (303)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999985554 4444443 3489999999764321 23556677665443
No 82
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3e-21 Score=181.50 Aligned_cols=155 Identities=21% Similarity=0.233 Sum_probs=112.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+. ....+++.+
T Consensus 20 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~v~ 80 (239)
T cd03296 20 DVSLDIPS--GELVALLGPSGSGKTTLLRLIAGLERP-----------DSGTILFGGEDATDVPV------QERNVGFVF 80 (239)
T ss_pred eeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCc------cccceEEEe
Confidence 77888888 779999999999999999999999765 89999999987643321 123456666
Q ss_pred hhccccCC---hhhhHHHHhcC------CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS---SDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~------~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+..... ......+.+.++++.+++ ..++++..||+||+||++++ +++
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 160 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65444433 23332221111 112223457788999998 57888999999999999998 999
Q ss_pred ccCCCCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~ 225 (399)
||||++||...... ++.++.. ..++|++||+...
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 199 (239)
T cd03296 161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE 199 (239)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999999985544 4555543 3489999999753
No 83
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.86 E-value=2.6e-21 Score=182.14 Aligned_cols=174 Identities=20% Similarity=0.167 Sum_probs=120.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+...+ ......+++.
T Consensus 19 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~v 84 (243)
T TIGR02315 19 KNINLNINP--GEFVAIIGPSGAGKSTLLRCINRLVEP-----------SSGSILLEGTDITKLRGKKL-RKLRRRIGMI 84 (243)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CccEEEECCEEhhhCCHHHH-HHHHhheEEE
Confidence 377888888 779999999999999999999999765 89999999987654321111 0112345566
Q ss_pred hhhccccCChhhhHHHHhc-------------CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce-------
Q 015822 131 RQVIAVSKSSDIVLMVLDA-------------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~-------------~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia------- 188 (399)
+|....+....+.-.+... .......+++.+.++.+++ ..++++..||+||+||++|+
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 164 (243)
T TIGR02315 85 FQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQP 164 (243)
T ss_pred cCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 6554444332222222110 0112334567888999998 67888999999999999998
Q ss_pred --eeeccCCCCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCHH-HHHHHHhhccccccEEEEEecC
Q 015822 189 --FNSTLPLTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~~-~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
+++||||++||...... +++.+.. ..+++++||+.... ++ ...+++++..
T Consensus 165 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~----------~d~v~~l~~G 222 (243)
T TIGR02315 165 DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKY----------ADRIVGLKAG 222 (243)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh----------cCeEEEEECC
Confidence 99999999999985544 4444432 34899999997653 22 3456666654
No 84
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.86 E-value=3.8e-21 Score=177.41 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=113.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.+ .......+++.+
T Consensus 18 ~~s~~i~~--G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~--~~~~~~~i~~~~ 82 (213)
T cd03262 18 GIDLTVKK--GEVVVIIGPSGSGKSTLLRCINLLEEP-----------DSGTIIIDGLKLTDDKKN--INELRQKVGMVF 82 (213)
T ss_pred CceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccchh--HHHHHhcceEEe
Confidence 67888888 779999999999999999999999765 899999999877421111 011234566666
Q ss_pred hhccccCC---hhhhHHHH---hcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIAVSKS---SDIVLMVL---DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~---d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|....+.. .+.+.+.. .........+.+.+.++.+|+ .+++++..||+||+||++++ +++|||
T Consensus 83 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 162 (213)
T cd03262 83 QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP 162 (213)
T ss_pred cccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 65544433 23332211 111222334567788999998 67899999999999999998 999999
Q ss_pred CCCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~ 225 (399)
|++||...... ++..+.. ..+++++||+...
T Consensus 163 ~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~ 197 (213)
T cd03262 163 TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197 (213)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999985544 4444443 3489999999764
No 85
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.86 E-value=2e-21 Score=186.13 Aligned_cols=154 Identities=29% Similarity=0.294 Sum_probs=111.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccC-cccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~-~~~~~q~~~~~~~~d 141 (399)
+|+|+|+||||||||+|+|+|.. +.++++|+||+++..|....++.++.++||||+....... ..+.......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 79999999999999999999987 4689999999999999988888899999999986532111 111223344567899
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|++........+...+ .
T Consensus 82 vvl~VvD~~~~~~~~~~i~~~l--------------------------------------------~------------- 104 (270)
T TIGR00436 82 LILFVVDSDQWNGDGEFVLTKL--------------------------------------------Q------------- 104 (270)
T ss_pred EEEEEEECCCCCchHHHHHHHH--------------------------------------------H-------------
Confidence 9999988765422111111110 0
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChhhH----HHHH---cCCCEEEecchhccchHHHHHHHHHHhC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLA---RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~----~~l~---~~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
...+|+++|+||+|+...... ..+. .+.+++++||++|.|+++|.+.+.+.+.
T Consensus 105 --------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 105 --------------NLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred --------------hcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 013699999999999754432 1221 2236899999999999999999988774
No 86
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=191.61 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=124.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+...+ ...+..+++.+
T Consensus 23 ~vsl~i~~--Gei~~iiG~nGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~-~~~~~~ig~v~ 88 (343)
T PRK11153 23 NVSLHIPA--GEIFGVIGASGAGKSTLIRCINLLERP-----------TSGRVLVDGQDLTALSEKEL-RKARRQIGMIF 88 (343)
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHH-HHHhcCEEEEe
Confidence 77888888 789999999999999999999999765 89999999998754332111 11234567766
Q ss_pred hhccccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+.... .......+.+.+.|+.+|+ ..++++..||+||+||++|| +++||||
T Consensus 89 q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt 168 (343)
T PRK11153 89 QHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 66554443 3333332221 1122334567888999998 67889999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 196 THVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||...... +++.+.. ..+++++||++....- ....++++++.-+
T Consensus 169 s~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~---------~~d~v~~l~~G~i 219 (343)
T PRK11153 169 SALDPATTRSILELLKDINRELGLTIVLITHEMDVVKR---------ICDRVAVIDAGRL 219 (343)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 9999985544 4445443 3489999999765321 2345666665543
No 87
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.86 E-value=2.5e-21 Score=175.68 Aligned_cols=159 Identities=19% Similarity=0.143 Sum_probs=111.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.. +.... ......+++.
T Consensus 9 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~-~~~~~-~~~~~~i~~~ 73 (190)
T TIGR01166 9 KGLNFAAER--GEVLALLGANGAGKSTLLLHLNGLLRP-----------QSGAVLIDGEPLDY-SRKGL-LERRQRVGLV 73 (190)
T ss_pred cceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceeEEECCEEccc-cccch-HHHHhhEEEE
Confidence 377888888 779999999999999999999998765 89999999988742 11111 1112345555
Q ss_pred hhhcc--ccC--ChhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIA--VSK--SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~--~~~--~~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|... .+. -.+.+.+..... ......+.+.+.++.+|+ ..++++..||+||+||++++ +++||
T Consensus 74 ~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 74 FQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 55431 121 133333221111 122233467788888998 57888999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hhC-CcEEEEcCCCC
Q 015822 194 PLTHVDEKLCYQILHEY---KIH-NAEVLFREDAT 224 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~~-~~~v~vthd~~ 224 (399)
||++||......+.+.+ ... .+++++||+..
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999998655554444 333 48999999975
No 88
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.86 E-value=4e-21 Score=177.31 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=112.8
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+. ....+++.
T Consensus 17 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~v~~~g~~~~~~~~------~~~~i~~~ 77 (213)
T cd03301 17 DDLNLDIAD--GEFVVLLGPSGCGKTTTLRMIAGLEEP-----------TSGRIYIGGRDVTDLPP------KDRDIAMV 77 (213)
T ss_pred eceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCc------ccceEEEE
Confidence 377888888 789999999999999999999998765 89999999988643221 11235555
Q ss_pred hhhccccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .+.+.+.... .......+.+.+.++.+|+ .+++++..||+||+||+.++ +++|||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 555443333 2333222111 1222334567788999998 57889999999999999988 999999
Q ss_pred CCCCCHHHHHHHHH---Hhhh--CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQILH---EYKI--HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~ll~---~l~~--~~~~v~vthd~~~ 225 (399)
|++||......+++ .+.. ..+++++|||...
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~ 193 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE 193 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999986555544 4432 3489999999754
No 89
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=4.7e-22 Score=171.90 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=125.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++||.+.+ |++++|.||+|||||||+++++...++ ++|.+.|.|.++.-.+.+.++ ..+.+..
T Consensus 21 ~isl~v~~--Ge~iaitGPSG~GKStllk~va~Lisp-----------~~G~l~f~Ge~vs~~~pea~R----q~VsY~~ 83 (223)
T COG4619 21 NISLSVRA--GEFIAITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDVSTLKPEAYR----QQVSYCA 83 (223)
T ss_pred ceeeeecC--CceEEEeCCCCccHHHHHHHHHhccCC-----------CCceEEEcCccccccChHHHH----HHHHHHH
Confidence 78899998 789999999999999999999999877 999999999999887766543 3345555
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|....+.. .|++++-........+......+|+++++ .+.++...|||||+||.++. +++||||++
T Consensus 84 Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 84 QTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred cCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 66555554 56666655444444456678889999998 78999999999999999987 899999999
Q ss_pred CCHH---HHHHHHHHhh-h-CCcEEEEcCCCCH
Q 015822 198 VDEK---LCYQILHEYK-I-HNAEVLFREDATV 225 (399)
Q Consensus 198 LD~~---~v~~ll~~l~-~-~~~~v~vthd~~~ 225 (399)
||+. .+.+++..+- . .-+++.||||...
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHH
Confidence 9997 4555555554 2 3389999999754
No 90
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=2.5e-22 Score=178.26 Aligned_cols=158 Identities=19% Similarity=0.216 Sum_probs=128.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.++||.|.+ |+.|||+|||||||||.|.+++|...+ ++|.+.++|.+|+.+. +...++.|+|+.
T Consensus 21 ~~Vsl~v~~--GEiVGLLGPNGAGKTT~Fymi~Glv~~-----------d~G~i~ld~~diT~lP---m~~RArlGigYL 84 (243)
T COG1137 21 NDVSLEVNS--GEIVGLLGPNGAGKTTTFYMIVGLVRP-----------DSGKILLDDEDITKLP---MHKRARLGIGYL 84 (243)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCceeEEEEEEEEEec-----------CCceEEECCcccccCC---hHHHhhcCcccc
Confidence 378899988 789999999999999999999999766 9999999999887653 456788999999
Q ss_pred hhhccccCCh---hhhHHHHhcCC----cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeec
Q 015822 131 RQVIAVSKSS---DIVLMVLDASK----SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 131 ~q~~~~~~~~---d~il~v~d~~~----~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
+|..+.++.. |++..++.... ..+....+.++|+.|.| ..+++..+|||||++|+.|| +++|
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec
Confidence 9999988874 55666655433 12344457899999999 67788899999999999998 8999
Q ss_pred cCCCCCCHH---HHHHHHHHhhhCC-cEEEEcCCCC
Q 015822 193 LPLTHVDEK---LCYQILHEYKIHN-AEVLFREDAT 224 (399)
Q Consensus 193 Epts~LD~~---~v~~ll~~l~~~~-~~v~vthd~~ 224 (399)
||++++|+- .++.+...++-.+ .+++..|+..
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR 200 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH
Confidence 999999987 4556666666555 6777778754
No 91
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.7e-21 Score=170.15 Aligned_cols=163 Identities=19% Similarity=0.239 Sum_probs=126.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeeccc-Ccccccccc-------
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGA------- 123 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~i-D~~Gl~~~~------- 123 (399)
++|+.-.+ |..|.|||.+||||||||+|+.-.+.| ..|.|.++|..+.+. |..|-...+
T Consensus 24 GvSL~A~~--GdVisIIGsSGSGKSTfLRCiN~LE~P-----------~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r 90 (256)
T COG4598 24 GVSLQANA--GDVISIIGSSGSGKSTFLRCINFLEKP-----------SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90 (256)
T ss_pred ceeeecCC--CCEEEEecCCCCchhHHHHHHHhhcCC-----------CCceEEECCeEEEeeeCCCCCeeeCCHHHHHH
Confidence 56666666 789999999999999999999988866 899999999988764 333322211
Q ss_pred -ccCcccchhhccccCChhhhHHHHhcC------CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce------
Q 015822 124 -SEGKGRGRQVIAVSKSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------ 188 (399)
Q Consensus 124 -~~~~~~~~q~~~~~~~~d~il~v~d~~------~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia------ 188 (399)
+...++++|..++.....++..|+.+. ...+..++.+.+|..+|+ ..+.+|..|||||+||.+||
T Consensus 91 ~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLame 170 (256)
T COG4598 91 LRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAME 170 (256)
T ss_pred HHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcC
Confidence 344667777777666777766665542 344567788999999999 77899999999999999998
Q ss_pred ---eeeccCCCCCCHHHHHHHHH---HhhhC-CcEEEEcCCCCHHH
Q 015822 189 ---FNSTLPLTHVDEKLCYQILH---EYKIH-NAEVLFREDATVDD 227 (399)
Q Consensus 189 ---li~DEpts~LD~~~v~~ll~---~l~~~-~~~v~vthd~~~~~ 227 (399)
++.|||||+||++-+-++|+ .+..+ .|.+++||++....
T Consensus 171 P~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR 216 (256)
T COG4598 171 PEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFAR 216 (256)
T ss_pred CceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHH
Confidence 88899999999996555554 44444 49999999987654
No 92
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.8e-21 Score=180.75 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=120.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+.... ......+++.+
T Consensus 19 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~ 84 (241)
T cd03256 19 DVSLSINP--GEFVALIGPSGAGKSTLLRCLNGLVEP-----------TSGSVLIDGTDINKLKGKAL-RQLRRQIGMIF 84 (241)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEeccccCHhHH-HHHHhccEEEc
Confidence 77888888 779999999999999999999998765 78999999987754321000 11123456666
Q ss_pred hhccccCCh---hhhHHHHh----------cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKSS---DIVLMVLD----------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d----------~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+... +.+.+... ........+.+.+.++.+++ ..++++..||+||+||++++
T Consensus 85 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 164 (241)
T cd03256 85 QQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164 (241)
T ss_pred ccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 654444332 22221110 00112334567788999998 57888999999999999998
Q ss_pred -eeeccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 189 -FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
+++||||++||......+ ++.+.. ..+++++|||...... ....+++++..
T Consensus 165 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~---------~~d~v~~l~~G 221 (241)
T cd03256 165 LILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE---------YADRIVGLKDG 221 (241)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECC
Confidence 999999999999865544 444432 3489999999765331 23556666654
No 93
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.86 E-value=2.7e-21 Score=194.04 Aligned_cols=172 Identities=17% Similarity=0.185 Sum_probs=122.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |++++|+|||||||||||++|+|...+ .+|.+.++|.++.-.+... ....+++..
T Consensus 21 ~vs~~i~~--Geiv~liGpNGaGKSTLLk~LaGll~p-----------~sG~I~l~G~~i~~~~~~~----~~~~ig~v~ 83 (402)
T PRK09536 21 GVDLSVRE--GSLVGLVGPNGAGKTTLLRAINGTLTP-----------TAGTVLVAGDDVEALSARA----ASRRVASVP 83 (402)
T ss_pred eeEEEECC--CCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEEcCcCCHHH----HhcceEEEc
Confidence 77888887 789999999999999999999998765 8999999998875433221 123456666
Q ss_pred hhccccCC---hhhhHHHHh----cCC--cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS---SDIVLMVLD----ASK--SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d----~~~--~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....... .+.+.+... ... ...+.+.+.+.|+.+|+ ..++++.+||+||+||+.|| +++
T Consensus 84 q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLL 163 (402)
T PRK09536 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLL 163 (402)
T ss_pred cCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 55433333 233322111 011 23445678899999999 67889999999999999998 999
Q ss_pred ccCCCCCCHHH---HHHHHHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 192 TLPLTHVDEKL---CYQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 192 DEpts~LD~~~---v~~ll~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
||||++||+.. +.++|+.+.. ..++|+++||+....- +...++++++.-
T Consensus 164 DEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~---------~adrii~l~~G~ 216 (402)
T PRK09536 164 DEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAAR---------YCDELVLLADGR 216 (402)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH---------hCCEEEEEECCE
Confidence 99999999984 5555555543 3489999999776431 235566666543
No 94
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4.8e-21 Score=176.62 Aligned_cols=156 Identities=18% Similarity=0.175 Sum_probs=113.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+. ....+++.+
T Consensus 16 ~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~~~ 76 (211)
T cd03298 16 HFDLTFAQ--GEITAIVGPSGSGKSTLLNLIAGFETP-----------QSGRVLINGVDVTAAPP------ADRPVSMLF 76 (211)
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCcCCH------hHccEEEEe
Confidence 67777777 789999999999999999999999765 89999999988753321 123456666
Q ss_pred hhccccCCh---hhhHHHHhcC-C-cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDAS-K-SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~-~-~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+... +.+.+..... . .....+.+.+.|+.+++ ..++.+..||+||+||+.++ +++||||
T Consensus 77 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred cccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 655444432 3232221111 1 11234467888999998 57888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCHH
Q 015822 196 THVDEKLCYQILHEY---KI--HNAEVLFREDATVD 226 (399)
Q Consensus 196 s~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~~ 226 (399)
++||......+++.+ .. ..+++++||+....
T Consensus 157 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 192 (211)
T cd03298 157 AALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999998655554444 32 34899999997643
No 95
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.5e-21 Score=178.69 Aligned_cols=156 Identities=16% Similarity=0.134 Sum_probs=112.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.. .+ ......+++.+
T Consensus 18 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~--~~---~~~~~~i~~~~ 79 (220)
T cd03265 18 GVSFRVRR--GEIFGLLGPNGAGKTTTIKMLTTLLKP-----------TSGRATVAGHDVVR--EP---REVRRRIGIVF 79 (220)
T ss_pred ceeEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecCc--Ch---HHHhhcEEEec
Confidence 67888887 779999999999999999999998755 89999999987642 11 11123455555
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.+.|+.+++ ..++++..||+||+||+.++ +++||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 55443333 23333222211 122234567888999998 67888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHH---Hhhh--CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQILH---EYKI--HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll~---~l~~--~~~~v~vthd~~~ 225 (399)
++||......+++ .+.. ..+++++||+...
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~ 194 (220)
T cd03265 160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE 194 (220)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999986555544 4433 3489999999764
No 96
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.86 E-value=3.5e-21 Score=189.25 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=124.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|+||||||||+++|+|...+ .+|.|.++|.++.-++...+. .....+++++
T Consensus 39 ~vsl~i~~--Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-----------~~G~I~~~G~~i~~~~~~~~~-~~r~~i~~v~ 104 (331)
T PRK15079 39 GVTLRLYE--GETLGVVGESGCGKSTFARAIIGLVKA-----------TDGEVAWLGKDLLGMKDDEWR-AVRSDIQMIF 104 (331)
T ss_pred eEEEEEcC--CCEEEEECCCCCCHHHHHHHHHCCCCC-----------CCcEEEECCEECCcCCHHHHH-HHhCceEEEe
Confidence 77888888 789999999999999999999999765 789999999987544322111 1223567777
Q ss_pred hhc--cccCC---hhhhHHHHhc----CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------ee
Q 015822 132 QVI--AVSKS---SDIVLMVLDA----SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~--~~~~~---~d~il~v~d~----~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|.. ...+. .+.+...+.. ....+..+.+.+.|+.+++ .+++++.+|||||+||++|| ++
T Consensus 105 Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 105 QDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 764 22222 2333322221 1223334567888999998 46899999999999999998 99
Q ss_pred eccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 191 STLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 191 ~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+||||++||.....++ ++.+.. ..++|++|||+....- ....++|++...++
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~---------~~dri~vl~~G~iv 241 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKH---------ISDRVLVMYLGHAV 241 (331)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 9999999998855444 445443 3489999999876431 13456666654433
No 97
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=4.2e-21 Score=190.65 Aligned_cols=176 Identities=19% Similarity=0.199 Sum_probs=122.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCcccc-ccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI-IEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl-~~~~~~~~~~~ 130 (399)
+++|++.+ |+.++|+|+|||||||||++|+|...+ .+|.+.++|.++.... .+. .......+++.
T Consensus 15 ~isl~i~~--Gei~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~i~~~~-~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 15 DADFTLPG--QGVTAIFGRSGSGKTTLIRLIAGLTRP-----------DEGEIVLNGRTLFDSR-KGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccCc-cccccchhhCCeEEE
Confidence 56777776 789999999999999999999999765 8999999998764311 100 01123456677
Q ss_pred hhhccccCChh---hhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCC
Q 015822 131 RQVIAVSKSSD---IVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (399)
Q Consensus 131 ~q~~~~~~~~d---~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts 196 (399)
+|....+.... .+.+.............+.++|+.+++ .+++++..||+||+||+++| +++||||+
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts 160 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA 160 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 77655554433 333222211222234467888999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 197 HVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 197 ~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+||......+ ++++.. ..+++++|||...... ....++++++.-+
T Consensus 161 ~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~---------~~d~i~~l~~G~i 210 (354)
T TIGR02142 161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLR---------LADRVVVLEDGRV 210 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hCCEEEEEeCCEE
Confidence 9999865544 444443 3489999999764321 1345666665443
No 98
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.7e-21 Score=190.86 Aligned_cols=176 Identities=14% Similarity=0.078 Sum_probs=122.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|...+ .+|.+.++|.++...+...........+++.+
T Consensus 16 ~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~ 82 (352)
T PRK11144 16 TVNLTLPA--QGITAIFGRSGAGKTSLINAISGLTRP-----------QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVF 82 (352)
T ss_pred EEEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccchhhCCEEEEc
Confidence 56777777 779999999999999999999999765 89999999987642110000111234567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~ 200 (399)
|....++...+.-.+..... ....+.+.+.|+.+|+ .+++++..||+||+||++|+ +++||||++||.
T Consensus 83 q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~ 161 (352)
T PRK11144 83 QDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred CCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 76655555433322221111 1224567888999998 67899999999999999998 999999999999
Q ss_pred HHHHH---HHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 201 KLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 201 ~~v~~---ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
..... +++.+.. ..+++++|||...... ....++++++.-+
T Consensus 162 ~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~---------~~d~i~~l~~G~i 207 (352)
T PRK11144 162 PRKRELLPYLERLAREINIPILYVSHSLDEILR---------LADRVVVLEQGKV 207 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHH---------hCCEEEEEeCCEE
Confidence 85554 4444432 3489999999753221 2345666665443
No 99
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.86 E-value=5.7e-21 Score=178.58 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=113.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+... .....+++.
T Consensus 17 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~~ 80 (232)
T cd03218 17 NGVSLSVKQ--GEIVGLLGPNGAGKTTTFYMIVGLVKP-----------DSGKILLDGQDITKLPMHK---RARLGIGYL 80 (232)
T ss_pred ccceeEecC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccCCHhH---HHhccEEEe
Confidence 377888888 779999999999999999999999765 8999999998765332111 012345565
Q ss_pred hhhccccCCh---hhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKSS---DIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~~---d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+... +.+.+..... ........+.++++.+++ ..++.+..||+||+||+.++ +++|||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 6654444432 3332222111 122234457788899998 57888999999999999988 899999
Q ss_pred CCCCCHHHHHH---HHHHhhhC-CcEEEEcCCCC
Q 015822 195 LTHVDEKLCYQ---ILHEYKIH-NAEVLFREDAT 224 (399)
Q Consensus 195 ts~LD~~~v~~---ll~~l~~~-~~~v~vthd~~ 224 (399)
|++||...... +++.+... .+++++|||..
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 99999986555 44454433 48999999975
No 100
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.86 E-value=4e-21 Score=188.89 Aligned_cols=181 Identities=19% Similarity=0.138 Sum_probs=124.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|+||||||||+++|+|...+. ...+|.|.++|.++.-++...+.......+++.+
T Consensus 34 ~vsl~i~~--Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~--------~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~ 103 (330)
T PRK09473 34 DLNFSLRA--GETLGIVGESGSGKSQTAFALMGLLAAN--------GRIGGSATFNGREILNLPEKELNKLRAEQISMIF 103 (330)
T ss_pred eeEEEEcC--CCEEEEECCCCchHHHHHHHHHcCCCCC--------CCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEE
Confidence 77888888 7899999999999999999999997540 0138999999998765443222211123567777
Q ss_pred hhcc--ccCC---hhhhHHHHhc---CCcHHHHHHHHHHHHHcCC-----cccccccccchhhHhhcCce---------e
Q 015822 132 QVIA--VSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~--~~~~---~d~il~v~d~---~~~~~~~~~i~~~L~~~gi-----~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|... ..+. .+.+...+.. ....+..+++.+.|+.+++ .+++++.+|||||+||++|| +
T Consensus 104 Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~ll 183 (330)
T PRK09473 104 QDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLL 183 (330)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 7642 2222 2222222211 1223334567888999987 24678999999999999998 9
Q ss_pred eeccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||......+ +..+.. ..++|++|||.....- ....++|++..-++
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~---------~~Dri~vm~~G~iv 241 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAG---------ICDKVLVMYAGRTM 241 (330)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999999999855544 445543 3489999999875431 13567777766544
No 101
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.5e-21 Score=188.28 Aligned_cols=182 Identities=18% Similarity=0.134 Sum_probs=124.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|+||||||||+++|+|...+. -.+++|.+.++|.++.-++...+.......+++.+
T Consensus 25 ~vsl~i~~--Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-------~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~ 95 (326)
T PRK11022 25 RISYSVKQ--GEVVGIVGESGSGKSVSSLAIMGLIDYP-------GRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIF 95 (326)
T ss_pred eeEEEECC--CCEEEEECCCCChHHHHHHHHHcCCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEe
Confidence 78888888 7799999999999999999999987431 11368999999998754432222211123466666
Q ss_pred hhcc--ccCCh---hhhHHHHhc---CCcHHHHHHHHHHHHHcCC-----cccccccccchhhHhhcCce---------e
Q 015822 132 QVIA--VSKSS---DIVLMVLDA---SKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~--~~~~~---d~il~v~d~---~~~~~~~~~i~~~L~~~gi-----~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|... ..+.. +.+...+.. ....+..+++.++|+.+|+ .+++++.+||+||+||++|| +
T Consensus 96 Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 96 QDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred cCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 6542 12211 222222211 1223345678899999998 35789999999999999998 9
Q ss_pred eeccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||.....++ ++.+.. ..++|++|||.....- ....++|++..-++
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~---------~adri~vm~~G~iv 233 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAE---------AAHKIIVMYAGQVV 233 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999999999855554 444442 3489999999876431 23567777765443
No 102
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.8e-21 Score=185.02 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=113.3
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.....+.-......++++.
T Consensus 24 ~~vsl~i~~--Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v 90 (287)
T PRK13641 24 DNISFELEE--GSFVALVGHTGSGKSTLMQHFNALLKP-----------SSGTITIAGYHITPETGNKNLKKLRKKVSLV 90 (287)
T ss_pred eeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHHHHHhceEEE
Confidence 377888888 789999999999999999999999765 8999999998874321111001122345666
Q ss_pred hhhc--ccc--CChhhhHHHHh--cCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeec
Q 015822 131 RQVI--AVS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 131 ~q~~--~~~--~~~d~il~v~d--~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
+|.. ..+ .-.+.+.+... ........+++.++|+.+|+ ..++++..||+||+||++|+ +++|
T Consensus 91 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD 170 (287)
T PRK13641 91 FQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170 (287)
T ss_pred EeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6542 122 11333332211 12223334567888999998 35788999999999999998 9999
Q ss_pred cCCCCCCHHHHHHH---HHHhhhC-CcEEEEcCCCCH
Q 015822 193 LPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 193 Epts~LD~~~v~~l---l~~l~~~-~~~v~vthd~~~ 225 (399)
|||++||......+ ++.+... .+++++|||+..
T Consensus 171 EPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~ 207 (287)
T PRK13641 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999855544 4444333 489999999764
No 103
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4.1e-21 Score=177.05 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=112.8
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ | .++|+|+||||||||+++|+|...+ .+|.+.++|.++...+ . .....+++.
T Consensus 17 ~~vs~~i~~--g-~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~-~----~~~~~i~~~ 77 (211)
T cd03264 17 DGVSLTLGP--G-MYGLLGPNGAGKTTLMRILATLTPP-----------SSGTIRIDGQDVLKQP-Q----KLRRRIGYL 77 (211)
T ss_pred cceeEEEcC--C-cEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCCccccch-H----HHHhheEEe
Confidence 377888888 7 9999999999999999999998765 8999999997764221 1 112345555
Q ss_pred hhhccccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .+.+.+... ........+.+.+.++.+++ ..++++..||+||+||+.++ +++|||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 555443333 233332211 11122234567788999998 56888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHH
Q 015822 195 LTHVDEKLCYQILHEY---KIHNAEVLFREDATVD 226 (399)
Q Consensus 195 ts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~ 226 (399)
|++||......+.+.+ ....+++++|||....
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 192 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDV 192 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 9999998655544444 3346899999997653
No 104
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.86 E-value=4.8e-21 Score=177.41 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=114.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.. + + ......+++.
T Consensus 22 ~~~sl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~-~-~---~~~~~~i~~~ 83 (218)
T cd03266 22 DGVSFTVKP--GEVTGLLGPNGAGKTTTLRMLAGLLEP-----------DAGFATVDGFDVVK-E-P---AEARRRLGFV 83 (218)
T ss_pred cceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEEccc-C-H---HHHHhhEEEe
Confidence 367888887 779999999999999999999998765 89999999988752 1 1 1122345666
Q ss_pred hhhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .+.+.+..... ......+.+.+.|+.+|+ .+++++..||+||+||++++ +++|||
T Consensus 84 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 163 (218)
T cd03266 84 SDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEP 163 (218)
T ss_pred cCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 665544443 23332222211 122334567889999999 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQI---LHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~ 225 (399)
|++||......+ +..+.. ..++|++||+...
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 164 TTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 999999855544 444433 3499999999754
No 105
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.85 E-value=4.4e-21 Score=177.91 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=113.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.... ......+++.
T Consensus 19 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~-----~~~~~~i~~v 80 (220)
T cd03263 19 DDLSLNVYK--GEIFGLLGHNGAGKTTTLKMLTGELRP-----------TSGTAYINGYSIRTDR-----KAARQSLGYC 80 (220)
T ss_pred cceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccch-----HHHhhhEEEe
Confidence 377888888 779999999999999999999999765 8999999998764211 1122335555
Q ss_pred hhhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .+.+.+..... ......+.+.++++.+++ .+++++..||+||+||++++ +++|||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 555433333 23332222111 122233567788999998 56788999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHH
Q 015822 195 LTHVDEKLCYQILHEYK---IHNAEVLFREDATVD 226 (399)
Q Consensus 195 ts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~ 226 (399)
|++||......+++.+. ...+++++||+....
T Consensus 161 ~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 195 (220)
T cd03263 161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEA 195 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 99999986655555443 335899999997653
No 106
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=5.9e-21 Score=178.68 Aligned_cols=161 Identities=22% Similarity=0.238 Sum_probs=115.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...+. .....+++.
T Consensus 22 ~~~s~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~-~~~~~i~~~ 87 (233)
T cd03258 22 KDVSLSVPK--GEIFGIIGRSGAGKSTLIRCINGLERP-----------TSGSVLVDGTDLTLLSGKELR-KARRRIGMI 87 (233)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHHH-HHHhheEEE
Confidence 367888888 779999999999999999999999765 899999999887543221110 112345666
Q ss_pred hhhccccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .+.+.+.... .......+.+.+.|+.+++ ..++.+..||+||+||++++ +++|||
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (233)
T cd03258 88 FQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEA 167 (233)
T ss_pred ccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 665544443 3333332211 1122234567888999998 56888999999999999998 999999
Q ss_pred CCCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~ 225 (399)
|++||...... ++..+.. ..+++++||+...
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 203 (233)
T cd03258 168 TSALDPETTQSILALLRDINRELGLTIVLITHEMEV 203 (233)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999985544 4555443 3489999999754
No 107
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.85 E-value=7.9e-21 Score=179.69 Aligned_cols=178 Identities=17% Similarity=0.165 Sum_probs=121.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccc----cccccccC
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG----IIEGASEG 126 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~G----l~~~~~~~ 126 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+... -.......
T Consensus 20 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T PRK11264 20 HGIDLEVKP--GEVVAIIGPSGSGKTTLLRCINLLEQP-----------EAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86 (250)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccccccchhhHHHHhhhh
Confidence 378888888 779999999999999999999998755 8899999998875332110 00111234
Q ss_pred cccchhhccccCC---hhhhHHHH---hcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------e
Q 015822 127 KGRGRQVIAVSKS---SDIVLMVL---DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 127 ~~~~~q~~~~~~~---~d~il~v~---d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
+++.+|....+.. .+.+.+.. .........+.+.+.|+.+|+ ..++++..||+||+||++++ +
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~ll 166 (250)
T PRK11264 87 VGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVI 166 (250)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEE
Confidence 5666665444433 23332211 111122234567788999998 56788999999999999988 9
Q ss_pred eeccCCCCCCHHHHHHHH---HHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 190 NSTLPLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll---~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||||++||......+. ..+.. ..+++++||+.....- ....+++++...+
T Consensus 167 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~---------~~d~i~~l~~G~i 222 (250)
T PRK11264 167 LFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARD---------VADRAIFMDQGRI 222 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hcCEEEEEECCEE
Confidence 999999999998655544 44443 3489999999754321 1345667765443
No 108
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=5.4e-21 Score=176.17 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=110.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.. .....+++.+
T Consensus 18 ~v~~~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~--------~~~~~i~~~~ 76 (210)
T cd03269 18 DISFSVEK--GEIFGLLGPNGAGKTTTIRMILGIILP-----------DSGEVLFDGKPLDI--------AARNRIGYLP 76 (210)
T ss_pred eeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCCchhH--------HHHccEEEec
Confidence 67888887 789999999999999999999998765 89999999976531 1122345555
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.+.++.+++ ..++++..||+||+||+.++ +++||||
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 77 EERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred cCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 54433333 23332222111 112234567888999998 56788999999999999988 8999999
Q ss_pred CCCCHHHHHHHHHHh---hhC-CcEEEEcCCCCH
Q 015822 196 THVDEKLCYQILHEY---KIH-NAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll~~l---~~~-~~~v~vthd~~~ 225 (399)
++||......+++.+ ... .+++++||+...
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 999998655554444 333 489999999764
No 109
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.8e-21 Score=187.49 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=124.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|+|.+ |+++||+|+||||||||+++|+|...+ .+|.+.++|.++.-.+...+. ..+..+++++
T Consensus 33 ~vsl~i~~--Ge~~~IvG~sGsGKSTLl~~l~gl~~p-----------~~G~i~~~g~~l~~~~~~~~~-~~r~~i~~v~ 98 (327)
T PRK11308 33 GVSFTLER--GKTLAVVGESGCGKSTLARLLTMIETP-----------TGGELYYQGQDLLKADPEAQK-LLRQKIQIVF 98 (327)
T ss_pred eeEEEECC--CCEEEEECCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEEcCcCCHHHHH-HHhCCEEEEE
Confidence 78888888 779999999999999999999999765 789999999887544321111 1123466766
Q ss_pred hhcc--ccCC---hhhhHHHHhc---CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIA--VSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~--~~~~---~d~il~v~d~---~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|... ..+. .+.+...+.. .......+.+.++|+.+|+ .+++++..|||||+||++|| |++
T Consensus 99 Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLil 178 (327)
T PRK11308 99 QNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVA 178 (327)
T ss_pred cCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6542 2221 1222221111 1223345678899999998 46889999999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
||||++||.....++ |.++.. ..++|++|||.....- ....++|+....++
T Consensus 179 DEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~---------~adrv~vm~~G~iv 234 (327)
T PRK11308 179 DEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEH---------IADEVMVMYLGRCV 234 (327)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 999999998855544 444442 3499999999876531 13566777765544
No 110
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.85 E-value=4.4e-21 Score=191.21 Aligned_cols=161 Identities=18% Similarity=0.239 Sum_probs=118.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe----ecccCccccccccccCc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK----IQLLDLPGIIEGASEGK 127 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~----i~~iD~~Gl~~~~~~~~ 127 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.+ +.-.+...+.......+
T Consensus 42 ~vsf~i~~--Gei~~I~G~nGsGKSTLlr~L~Gl~~p-----------~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 42 NASLDIEE--GEICVLMGLSGSGKSSLLRAVNGLNPV-----------SRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 88899988 779999999999999999999999765 89999999863 22222112221122467
Q ss_pred ccchhhccccCCh---hhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 128 GRGRQVIAVSKSS---DIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 128 ~~~~q~~~~~~~~---d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
++.+|....++.. +.+.+.... .........+.+.|+.+|+ ..++++.+||+||+||++|+ +++
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl 188 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM 188 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 7888876666653 333332221 1223344577889999999 67889999999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~ 225 (399)
||||++||+....++.+.+ .. ..++|++|||...
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 189 DEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999998655554444 32 3599999999775
No 111
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.85 E-value=6.3e-21 Score=185.42 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=124.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+||||||||||+++|+|...+ +.|.+.++|.++.- + + ......+++.+
T Consensus 20 ~is~~i~~--Gei~~l~G~NGaGKTTLl~~l~Gl~~~-----------~~G~i~i~g~~~~~-~-~---~~~~~~ig~~~ 81 (301)
T TIGR03522 20 EVSFEAQK--GRIVGFLGPNGAGKSTTMKIITGYLPP-----------DSGSVQVCGEDVLQ-N-P---KEVQRNIGYLP 81 (301)
T ss_pred EeEEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccc-C-h---HHHHhceEEec
Confidence 77888887 789999999999999999999998765 89999999987642 1 1 11234566666
Q ss_pred hhccccCC---hhhhHHHHhcCC--cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASK--SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~--~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+...... .....+.+.+.|+.+|+ ..++++..||+||+||++++ +++||||
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 65544443 333333222222 22234567889999999 67899999999999999998 9999999
Q ss_pred CCCCHHHHHHHH---HHhhhCCcEEEEcCCCCH-HHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCYQIL---HEYKIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~~ll---~~l~~~~~~v~vthd~~~-~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||+.....+. +.+....+++++||+... .++ ...++++++.-+.
T Consensus 162 ~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~----------~d~i~~l~~G~i~ 211 (301)
T TIGR03522 162 TGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAI----------CDRVIIINKGKIV 211 (301)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHh----------CCEEEEEECCEEE
Confidence 999998655544 444334589999999874 333 3567777766554
No 112
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.5e-21 Score=190.83 Aligned_cols=171 Identities=17% Similarity=0.199 Sum_probs=127.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.. |++++|+|||||||||||++|+|...+ ..|.+.++|.++.-. + .....+++.+
T Consensus 37 ~vsl~i~~--Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~~--~----~~~r~ig~vf 97 (377)
T PRK11607 37 DVSLTIYK--GEIFALLGASGCGKSTLLRMLAGFEQP-----------TAGQIMLDGVDLSHV--P----PYQRPINMMF 97 (377)
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCCC--C----HHHCCEEEEe
Confidence 67788887 779999999999999999999999866 899999999887532 2 1245678888
Q ss_pred hhccccCChhhhHHH---HhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMV---LDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v---~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+++..+.-.+ .... ...+..+++.+.|+.+++ ..++++..||+||+||++|+ +++||||
T Consensus 98 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~ 177 (377)
T PRK11607 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177 (377)
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 887777764444333 2221 222334568889999999 67899999999999999998 9999999
Q ss_pred CCCCHHHHHHHH---HHhh--hCCcEEEEcCCCCHH-HHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCYQIL---HEYK--IHNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~~ll---~~l~--~~~~~v~vthd~~~~-~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||......+. ..+. ...++|++|||.... .+ ...+++++..-+.
T Consensus 178 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l----------aDri~vl~~G~i~ 229 (377)
T PRK11607 178 GALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTM----------AGRIAIMNRGKFV 229 (377)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh----------CCEEEEEeCCEEE
Confidence 999998554443 3332 234899999997642 22 3566777765443
No 113
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.5e-21 Score=183.76 Aligned_cols=177 Identities=23% Similarity=0.210 Sum_probs=121.4
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCc-cccccccccCccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGR 129 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~-~Gl~~~~~~~~~~ 129 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+. ... ......+++
T Consensus 23 ~~vsl~i~~--Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~~ig~ 88 (288)
T PRK13643 23 FDIDLEVKK--GSYTALIGHTGSGKSTLLQHLNGLLQP-----------TEGKVTVGDIVVSSTSKQKEI-KPVRKKVGV 88 (288)
T ss_pred eeeEEEEcC--CCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccccH-HHHHhhEEE
Confidence 378888888 789999999999999999999999765 89999999998753211 111 112344566
Q ss_pred chhhc--cccCC--hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eee
Q 015822 130 GRQVI--AVSKS--SDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 130 ~~q~~--~~~~~--~d~il~v~d~--~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
.+|.. ..+.. .|.+.+.... ........++.+.|+.+++ ..++.+..||+||+||++|| +++
T Consensus 89 v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illL 168 (288)
T PRK13643 89 VFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVL 168 (288)
T ss_pred EecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 66643 12221 2223222111 1122334567788999998 35788999999999999998 999
Q ss_pred ccCCCCCCHHHHHHHH---HHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 192 TLPLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 192 DEpts~LD~~~v~~ll---~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||||++||......++ +.+.. ..++|++|||..... .....+++++..-+
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~---------~~~dri~~l~~G~i 222 (288)
T PRK13643 169 DEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVA---------DYADYVYLLEKGHI 222 (288)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH---------HhCCEEEEEECCEE
Confidence 9999999998655554 44443 349999999976432 12356777776544
No 114
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.85 E-value=5.4e-21 Score=175.87 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=111.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-. ......+++.+
T Consensus 18 ~~~~~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~------~~~~~~i~~~~ 78 (208)
T cd03268 18 DISLHVKK--GEIYGFLGPNGAGKTTTMKIILGLIKP-----------DSGEITFDGKSYQKN------IEALRRIGALI 78 (208)
T ss_pred eeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCCcccch------HHHHhhEEEec
Confidence 67888888 779999999999999999999998765 899999999865321 11123345555
Q ss_pred hhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|....+.. .+.+.+....... ..+.+.+.|+.+++ ..++++..||+||+||++++ +++||||++
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLGI--RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcCC--cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 54433333 2333222221111 23457788899998 67888999999999999988 999999999
Q ss_pred CCHHHHHHHH---HHhhh-CCcEEEEcCCCCHH
Q 015822 198 VDEKLCYQIL---HEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 198 LD~~~v~~ll---~~l~~-~~~~v~vthd~~~~ 226 (399)
||......++ .++.. ..+++++|||....
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 189 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEI 189 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 9998655554 44443 34899999997643
No 115
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.3e-21 Score=171.26 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=123.9
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.. |+.+||+|||||||||||++|+|...| ..|.+.++|.++..+....+ ....+..
T Consensus 18 ~~vsl~~~p--Gev~ailGPNGAGKSTlLk~LsGel~p-----------~~G~v~~~g~~l~~~~~~~l----A~~raVl 80 (259)
T COG4559 18 DGVSLDLRP--GEVLAILGPNGAGKSTLLKALSGELSP-----------DSGEVTLNGVPLNSWPPEEL----ARHRAVL 80 (259)
T ss_pred cCcceeccC--CcEEEEECCCCccHHHHHHHhhCccCC-----------CCCeEeeCCcChhhCCHHHH----HHHhhhc
Confidence 377888877 889999999999999999999999766 89999999987754432111 1112222
Q ss_pred hhhccccCC---hhhhHHHHh----cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce-------------
Q 015822 131 RQVIAVSKS---SDIVLMVLD----ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------------- 188 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d----~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia------------- 188 (399)
+|.....-. .+++.+-.- +..+.++...+.+.|+..++ ...+.+..|||||+||+.+|
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 333222222 222222111 12234566678899999988 78899999999999999988
Q ss_pred --eeeccCCCCCCHHH---HHHHHHHhhhC-CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 189 --FNSTLPLTHVDEKL---CYQILHEYKIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 189 --li~DEpts~LD~~~---v~~ll~~l~~~-~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+++||||++||... +..+.+++... .+++.|-||+++.. .|.+.|+++.+.-+
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA---------~YaDrivll~~Grv 219 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAA---------QYADRIVLLHQGRV 219 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHH---------HhhheeeeeeCCeE
Confidence 79999999999974 55566666544 58999999999865 25677777776543
No 116
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6.3e-21 Score=187.65 Aligned_cols=182 Identities=12% Similarity=0.099 Sum_probs=123.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|+||||||||+++|+|...+. ..+..|.|.++|.++.-++...+.......+++++
T Consensus 25 ~vsl~i~~--Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~ 95 (330)
T PRK15093 25 RVSMTLTE--GEIRGLVGESGSGKSLIAKAICGVTKDN-------WRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIF 95 (330)
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHHccCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEe
Confidence 77888888 7899999999999999999999987420 12478999999998754432222111123566777
Q ss_pred hhccc--cCC---hhhhHHHHhcC--------CcHHHHHHHHHHHHHcCCc-----ccccccccchhhHhhcCce-----
Q 015822 132 QVIAV--SKS---SDIVLMVLDAS--------KSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS----- 188 (399)
Q Consensus 132 q~~~~--~~~---~d~il~v~d~~--------~~~~~~~~i~~~L~~~gi~-----~~~~~~~LS~g~kqr~~ia----- 188 (399)
|.... .+. .+.+...+... ......+.+.+.|+.+|+. +++++..||+||+||++||
T Consensus 96 Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 96 QEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred cCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHC
Confidence 65431 111 12222111110 1122345678899999982 4788999999999999998
Q ss_pred ----eeeccCCCCCCHHHHH---HHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 ----FNSTLPLTHVDEKLCY---QILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 ----li~DEpts~LD~~~v~---~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
|++||||++||..... ++++++.. ..++|++|||.....- ....++|++..-++
T Consensus 176 ~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~---------~~dri~vm~~G~iv 238 (330)
T PRK15093 176 QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQ---------WADKINVLYCGQTV 238 (330)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH---------hCCEEEEEECCEEE
Confidence 9999999999988544 44555443 3489999999765431 23567777765543
No 117
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.2e-21 Score=180.01 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=110.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.... ..+++.
T Consensus 18 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~---------~~~~~v 75 (255)
T PRK11248 18 EDINLTLES--GELLVVLGPSGCGKTTLLNLIAGFVPY-----------QHGSITLDGKPVEGPG---------AERGVV 75 (255)
T ss_pred eeeeEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCC---------CcEEEE
Confidence 377888888 779999999999999999999999765 8999999998764211 113444
Q ss_pred hhhccccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .+.+.+... ........+.+.+.|+.+|+ ..++++..||+||+||+.++ +++|||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 454333332 233322111 11122234567889999998 56888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhh-h-CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQILH---EYK-I-HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~ll~---~l~-~-~~~~v~vthd~~~ 225 (399)
|++||......+.+ .+. . ..++|++|||...
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~ 191 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE 191 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999986555444 442 2 3489999999764
No 118
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.1e-20 Score=174.66 Aligned_cols=159 Identities=21% Similarity=0.240 Sum_probs=111.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCcc-ccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~-Gl~~~~~~~~~~~ 130 (399)
+++|++.+ . .++|+|+||||||||+++|+|...+ ..|.+.++|.++...... .. ......+++.
T Consensus 16 ~vsl~i~~-e--~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~-~~~~~~i~~~ 80 (214)
T cd03297 16 KIDFDLNE-E--VTGIFGASGAGKSTLLRCIAGLEKP-----------DGGTIVLNGTVLFDSRKKINL-PPQQRKIGLV 80 (214)
T ss_pred CceEEEcc-e--eEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccccchhhh-hhHhhcEEEE
Confidence 66777776 4 9999999999999999999999765 899999999876421100 00 0112345565
Q ss_pred hhhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCC
Q 015822 131 RQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts 196 (399)
+|....+.. .+.+.+......+....+.+.++++.+++ ..++++..||+||+||+.++ +++||||+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 160 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 665444333 33333222211222334567888999998 57889999999999999998 99999999
Q ss_pred CCCHHHHHHHHH---Hhhh--CCcEEEEcCCCCH
Q 015822 197 HVDEKLCYQILH---EYKI--HNAEVLFREDATV 225 (399)
Q Consensus 197 ~LD~~~v~~ll~---~l~~--~~~~v~vthd~~~ 225 (399)
+||......+.+ ++.. ..+++++||+...
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 194 (214)
T cd03297 161 ALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH
Confidence 999986555544 4433 3489999999764
No 119
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.85 E-value=1.2e-20 Score=176.38 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=109.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+.. .++.+
T Consensus 3 ~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---------~~~v~ 60 (230)
T TIGR01184 3 GVNLTIQQ--GEFISLIGHSGCGKSTLLNLISGLAQP-----------TSGGVILEGKQITEPGPD---------RMVVF 60 (230)
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCChh---------heEEe
Confidence 56888888 779999999999999999999999765 899999999876432210 13344
Q ss_pred hhccccCC---hhhhHHHHhc----CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 132 QVIAVSKS---SDIVLMVLDA----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~----~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
|....+.. .+.+.+.... .......+.+.+.++.+++ .+++++..||+||+||+.++ +++||
T Consensus 61 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 140 (230)
T TIGR01184 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDE 140 (230)
T ss_pred cCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 44333332 3333332211 1122334457888999998 57888999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCH
Q 015822 194 PLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV 225 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~ 225 (399)
||++||......+.+.+ .. ..+++++||+...
T Consensus 141 Pt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 177 (230)
T TIGR01184 141 PFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDE 177 (230)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999998655554444 32 3489999999764
No 120
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-20 Score=179.81 Aligned_cols=151 Identities=22% Similarity=0.194 Sum_probs=109.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.. ....+++.+
T Consensus 30 ~isl~i~~--Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~---------~~~~i~~v~ 87 (257)
T PRK11247 30 QLDLHIPA--GQFVAVVGRSGCGKSTLLRLLAGLETP-----------SAGELLAGTAPLAE---------AREDTRLMF 87 (257)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEHHH---------hhCceEEEe
Confidence 77888888 779999999999999999999999765 88999998876521 122345555
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~ 200 (399)
|....+....+...+...... .....+.++|+.+++ .+++++..||+||+||++|+ +++||||++||.
T Consensus 88 q~~~l~~~~tv~enl~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166 (257)
T ss_pred cCccCCCCCcHHHHHHhcccc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 554333332222222111111 123457788999998 67888999999999999998 999999999999
Q ss_pred HHHHHH---HHHhh-h-CCcEEEEcCCCCH
Q 015822 201 KLCYQI---LHEYK-I-HNAEVLFREDATV 225 (399)
Q Consensus 201 ~~v~~l---l~~l~-~-~~~~v~vthd~~~ 225 (399)
.....+ +..+. . ..++|++|||...
T Consensus 167 ~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 167 LTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 865544 44443 2 3589999999765
No 121
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.85 E-value=9.9e-21 Score=175.71 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=111.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ +.|.+.++|.++.-.+..- .....+++.
T Consensus 17 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~~ 80 (222)
T cd03224 17 FGVSLTVPE--GEIVALLGRNGAGKTTLLKTIMGLLPP-----------RSGSIRFDGRDITGLPPHE---RARAGIGYV 80 (222)
T ss_pred eeeeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCCCCHHH---HHhcCeEEe
Confidence 377888888 789999999999999999999999765 8999999998764333211 112345666
Q ss_pred hhhccccCChhhh---HHHHhcCCcHHHHHHHHHHHHHc-CC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 131 RQVIAVSKSSDIV---LMVLDASKSEGHRQILTKELEAV-GL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 131 ~q~~~~~~~~d~i---l~v~d~~~~~~~~~~i~~~L~~~-gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
+|....+....+. .+.............+.+.++.+ ++ ..++++..||+||+||+.++ +++||||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 6665444443332 22211111112233455666666 35 56888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---hhC-CcEEEEcCCCCH
Q 015822 196 THVDEKLCYQILHEY---KIH-NAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll~~l---~~~-~~~v~vthd~~~ 225 (399)
++||......+++.+ ... .+++++||+...
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 194 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 999998655554444 333 489999999764
No 122
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.85 E-value=1e-20 Score=181.12 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=113.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+ ......+++.+
T Consensus 25 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~v~ 90 (269)
T PRK11831 25 NISLTVPR--GKITAIMGPSGIGKTTLLRLIGGQIAP-----------DHGEILFDGENIPAMSRSRL-YTVRKRMSMLF 90 (269)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccChhhH-HHHhhcEEEEe
Confidence 67888888 779999999999999999999999765 78999999987754332111 01123455656
Q ss_pred hhccccCC---hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS---KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~---~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|....+.. .+.+.+..... ........+.+.|+.+|+ ..++++..||+||+||+.|+ +++|||
T Consensus 91 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 170 (269)
T PRK11831 91 QSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEP 170 (269)
T ss_pred cccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 65444443 23333322111 122233456778999998 57888999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~ 225 (399)
|++||......+ ++.+.. ..++|++|||...
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~ 206 (269)
T PRK11831 171 FVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE 206 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 999999865544 444432 3489999999643
No 123
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=1.1e-20 Score=177.97 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=114.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+..- ....++++.+
T Consensus 20 ~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~~~ 83 (242)
T TIGR03411 20 DLSLYVDP--GELRVIIGPNGAGKTTMMDVITGKTRP-----------DEGSVLFGGTDLTGLPEHQ---IARAGIGRKF 83 (242)
T ss_pred eeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCeecCCCCHHH---HHhcCeeEec
Confidence 77888887 779999999999999999999998765 8999999998765432110 1123456666
Q ss_pred hhccccCC---hhhhHHHHhcC----------CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS---SDIVLMVLDAS----------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~----------~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|.+.+..... ........+.+.++.+|+ ..++.+..||+||+||++++
T Consensus 84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~ 163 (242)
T TIGR03411 84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPK 163 (242)
T ss_pred cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 65444443 33333221110 112234567888999998 56888999999999999998
Q ss_pred -eeeccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCH
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~ 225 (399)
+++||||++||......+++.+ ....++|++||+...
T Consensus 164 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 204 (242)
T TIGR03411 164 LLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF 204 (242)
T ss_pred EEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 9999999999998655554444 334599999999764
No 124
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.5e-21 Score=183.87 Aligned_cols=171 Identities=18% Similarity=0.158 Sum_probs=121.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-..... ....+++.+
T Consensus 25 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~----~~~~i~~v~ 87 (279)
T PRK13650 25 DVSFHVKQ--GEWLSIIGHNGSGKSTTVRLIDGLLEA-----------ESGQIIIDGDLLTEENVWD----IRHKIGMVF 87 (279)
T ss_pred eeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHHH----HHhhceEEE
Confidence 77888888 789999999999999999999999765 8999999998875322111 123466666
Q ss_pred hhcc-ccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIA-VSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~-~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|... .+.. .+.+.+... ...+....+.+.+.|+.+|+ ..++.+..||+||+||++|| +++|||
T Consensus 88 q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 167 (279)
T PRK13650 88 QNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167 (279)
T ss_pred cChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 6531 2222 233322211 12233334567889999999 67899999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHH---hhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 195 LTHVDEKLCYQILHE---YKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 195 ts~LD~~~v~~ll~~---l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
|++||......+++. +.. ..+++++||+...... ...+++++..-
T Consensus 168 t~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~----------~dri~~l~~G~ 217 (279)
T PRK13650 168 TSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVAL----------SDRVLVMKNGQ 217 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh----------CCEEEEEECCE
Confidence 999999865555544 433 3489999999764332 34566776544
No 125
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.85 E-value=8.4e-21 Score=178.09 Aligned_cols=158 Identities=18% Similarity=0.104 Sum_probs=112.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+.. ....+++.+
T Consensus 19 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~i~~~~~~-----~~~~i~~~~ 80 (236)
T TIGR03864 19 DVSFTVRP--GEFVALLGPNGAGKSTLFSLLTRLYVA-----------QEGQISVAGHDLRRAPRA-----ALARLGVVF 80 (236)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccCChh-----hhhhEEEeC
Confidence 67888888 779999999999999999999999765 899999999876432211 112345555
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.+.++.+|+ .+++.+..||+||+||++++ +++||||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 54333222 23232221111 122234457788999998 57888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHH---Hhhh--CCcEEEEcCCCCHHH
Q 015822 196 THVDEKLCYQILH---EYKI--HNAEVLFREDATVDD 227 (399)
Q Consensus 196 s~LD~~~v~~ll~---~l~~--~~~~v~vthd~~~~~ 227 (399)
++||......+.+ .+.. ..+++++||+.....
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 161 VGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 9999986555544 4432 348999999986543
No 126
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=5.7e-21 Score=175.37 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=111.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.... .......++..
T Consensus 19 ~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~v~~~g~~~~~~~-----~~~~~~~~~~~ 80 (204)
T PRK13538 19 GLSFTLNA--GELVQIEGPNGAGKTSLLRILAGLARP-----------DAGEVLWQGEPIRRQR-----DEYHQDLLYLG 80 (204)
T ss_pred cceEEECC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccch-----HHhhhheEEeC
Confidence 78888888 779999999999999999999999765 8899999998764321 11122334444
Q ss_pred hhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
+....+.. .+.+.+....... ...+.+.+.|+.+|+ ..++++..||+||+||++++ +++||||++
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 159 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGP-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCc-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 43322222 2223222221111 234567889999998 57888999999999999998 999999999
Q ss_pred CCHHHHHHHHH---Hhhh-CCcEEEEcCCCCHHH
Q 015822 198 VDEKLCYQILH---EYKI-HNAEVLFREDATVDD 227 (399)
Q Consensus 198 LD~~~v~~ll~---~l~~-~~~~v~vthd~~~~~ 227 (399)
||......+.+ ++.. ..+++++||+....+
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhc
Confidence 99986555544 4433 358999999976654
No 127
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.2e-20 Score=180.97 Aligned_cols=173 Identities=18% Similarity=0.151 Sum_probs=120.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+++||+|+||||||||+++|+|...+ .+|.|.++|.++.-.+.. .....+++.
T Consensus 22 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~v 84 (274)
T PRK13647 22 KGLSLSIPE--GSKTALLGPNGAGKSTLLLHLNGIYLP-----------QRGRVKVMGREVNAENEK----WVRSKVGLV 84 (274)
T ss_pred eeEEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCHH----HHHhhEEEE
Confidence 377888888 789999999999999999999999765 899999999887432211 112345666
Q ss_pred hhhcc-ccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIA-VSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~-~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|... .+.. .+.+.+... ........+.+.+.|+.+|+ ..++++..||+||+||+++| +++||
T Consensus 85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE 164 (274)
T PRK13647 85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE 164 (274)
T ss_pred ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 66431 1112 222222111 11122234567888999998 67889999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 194 PLTHVDEKLCYQILHEY---KI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
||++||......+++.+ .. ..++|++|||..... .+...+++++..-
T Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~---------~~~d~i~~l~~G~ 215 (274)
T PRK13647 165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA---------EWADQVIVLKEGR 215 (274)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH---------HhCCEEEEEECCE
Confidence 99999998655555444 32 349999999976532 1235566666544
No 128
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=9.9e-21 Score=184.18 Aligned_cols=176 Identities=17% Similarity=0.167 Sum_probs=120.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecc-------------cCccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-------------LDLPG 118 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~-------------iD~~G 118 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.. ++..+
T Consensus 25 ~vsl~i~~--Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 91 (305)
T PRK13651 25 NVSVEINQ--GEFIAIIGQTGSGKTTFIEHLNALLLP-----------DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQK 91 (305)
T ss_pred eeEEEEeC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEEeceeccccccccccccccccccccc
Confidence 78888888 789999999999999999999999765 78999998865421 11111
Q ss_pred c-------ccccccCcccchhhc--cccC--ChhhhHHHHh--cCCcHHHHHHHHHHHHHcCC---cccccccccchhhH
Q 015822 119 I-------IEGASEGKGRGRQVI--AVSK--SSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKK 182 (399)
Q Consensus 119 l-------~~~~~~~~~~~~q~~--~~~~--~~d~il~v~d--~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~k 182 (399)
. ....+..+++.+|.. ..+. -.|.+.+... ........+++.+.|+.+|+ ..++++..||+||+
T Consensus 92 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqk 171 (305)
T PRK13651 92 TRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQK 171 (305)
T ss_pred ccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHH
Confidence 0 011234567777753 1221 1222222111 12223344568889999998 46889999999999
Q ss_pred hhcCce---------eeeccCCCCCCHHHHHHHHH---Hhhh-CCcEEEEcCCCCH-HHHHHHHhhccccccEEEEEecC
Q 015822 183 KTGGIS---------FNSTLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 183 qr~~ia---------li~DEpts~LD~~~v~~ll~---~l~~-~~~~v~vthd~~~-~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
||++|| +++||||++||+.....+++ .+.. ..++|++|||... .++ ...+++++..
T Consensus 172 qrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~----------adrv~vl~~G 241 (305)
T PRK13651 172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW----------TKRTIFFKDG 241 (305)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh----------CCEEEEEECC
Confidence 999998 99999999999986555444 4443 3489999999753 232 3566777665
Q ss_pred CC
Q 015822 249 DV 250 (399)
Q Consensus 249 Dl 250 (399)
-+
T Consensus 242 ~i 243 (305)
T PRK13651 242 KI 243 (305)
T ss_pred EE
Confidence 43
No 129
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.8e-20 Score=176.53 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=113.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccc--cccccccCccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG--IIEGASEGKGR 129 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~G--l~~~~~~~~~~ 129 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++....... -.......+++
T Consensus 20 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~ 86 (242)
T PRK11124 20 DITLDCPQ--GETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGM 86 (242)
T ss_pred eeeeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecccccccchhhHHHHHhheEE
Confidence 77888888 789999999999999999999998755 8999999998763211000 00111234566
Q ss_pred chhhccccCChhhhHHH----Hhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeec
Q 015822 130 GRQVIAVSKSSDIVLMV----LDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 130 ~~q~~~~~~~~d~il~v----~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
.+|....+....+.-.+ ... .........+.+.++.+|+ .+++.+..||+||+||++++ +++|
T Consensus 87 ~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD 166 (242)
T PRK11124 87 VFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFD 166 (242)
T ss_pred EecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 66655444433322222 111 1122234467788899998 67888999999999999998 8999
Q ss_pred cCCCCCCHHHHHHHHHHh---hh-CCcEEEEcCCCCHH
Q 015822 193 LPLTHVDEKLCYQILHEY---KI-HNAEVLFREDATVD 226 (399)
Q Consensus 193 Epts~LD~~~v~~ll~~l---~~-~~~~v~vthd~~~~ 226 (399)
|||++||......+++.+ .. ..+++++||+....
T Consensus 167 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 204 (242)
T PRK11124 167 EPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVA 204 (242)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999998655554444 33 34899999997653
No 130
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.6e-20 Score=180.69 Aligned_cols=162 Identities=19% Similarity=0.165 Sum_probs=111.7
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.......-.......+++.
T Consensus 24 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~ 90 (280)
T PRK13649 24 FDVNLTIED--GSYTAFIGHTGSGKSTIMQLLNGLHVP-----------TQGSVRVDDTLITSTSKNKDIKQIRKKVGLV 90 (280)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccCHHHHHhheEEE
Confidence 377888888 779999999999999999999999765 8999999998875322100001122345555
Q ss_pred hhhc--cccC--ChhhhHHHHhc--CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeec
Q 015822 131 RQVI--AVSK--SSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 131 ~q~~--~~~~--~~d~il~v~d~--~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
+|.. ..+. -.+.+.+.... .........+.+.|+.+++ ..++++..||+||+||++++ +++|
T Consensus 91 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 170 (280)
T PRK13649 91 FQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLD 170 (280)
T ss_pred eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 5542 1121 13333322211 1122233456778888888 25788999999999999998 9999
Q ss_pred cCCCCCCHHHHHHHHHH---hhh-CCcEEEEcCCCCH
Q 015822 193 LPLTHVDEKLCYQILHE---YKI-HNAEVLFREDATV 225 (399)
Q Consensus 193 Epts~LD~~~v~~ll~~---l~~-~~~~v~vthd~~~ 225 (399)
|||++||......+++. +.. ..++|++||+...
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~ 207 (280)
T PRK13649 171 EPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD 207 (280)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 99999999865555444 433 3489999999754
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.6e-20 Score=180.20 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=121.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. ......+++.
T Consensus 19 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~v 82 (274)
T PRK13644 19 ENINLVIKK--GEYIGIIGKNGSGKSTLALHLNGLLRP-----------QKGKVLVSGIDTGDFSKL---QGIRKLVGIV 82 (274)
T ss_pred eeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEECCccccH---HHHHhheEEE
Confidence 378888888 789999999999999999999998765 899999999877433211 0112345555
Q ss_pred hhhcc-ccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIA-VSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~-~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|... .+.. .+.+.+.... .......+.+.+.++.+|+ ..++++..||+||+||++|+ +++||
T Consensus 83 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 162 (274)
T PRK13644 83 FQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162 (274)
T ss_pred EEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 55432 1222 2333221111 1222334567788999998 67889999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hhC-CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 194 PLTHVDEKLCYQILHEY---KIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~~-~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||++||+.....+++.+ ... .++|++|||...... ...++++++..+
T Consensus 163 Pt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~----------~d~v~~l~~G~i 213 (274)
T PRK13644 163 VTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD----------ADRIIVMDRGKI 213 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh----------CCEEEEEECCEE
Confidence 99999998655554444 433 489999999765331 356677776554
No 132
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.4e-20 Score=182.06 Aligned_cols=176 Identities=19% Similarity=0.158 Sum_probs=119.8
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.......-.......+++.
T Consensus 24 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v 90 (290)
T PRK13634 24 YDVNVSIPS--GSYVAIIGHTGSGKSTLLQHLNGLLQP-----------TSGTVTIGERVITAGKKNKKLKPLRKKVGIV 90 (290)
T ss_pred eeEEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHHHHHhhEEEE
Confidence 378888888 789999999999999999999999765 8999999999874211000011123346666
Q ss_pred hhhc--cccC--ChhhhHHHHhc--CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeec
Q 015822 131 RQVI--AVSK--SSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 131 ~q~~--~~~~--~~d~il~v~d~--~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
+|.. ..+. -.+.+.+.... .......+.+.+.|+.+|+ ..++++..||+||+||++|| +++|
T Consensus 91 ~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllD 170 (290)
T PRK13634 91 FQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLD 170 (290)
T ss_pred eeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6643 1221 12222221111 1222334567888999998 25788999999999999998 9999
Q ss_pred cCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 193 LPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 193 Epts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
|||++||+.....+ +..+.. ..++|++|||..... .....+++++..
T Consensus 171 EPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~---------~~~drv~~l~~G 222 (290)
T PRK13634 171 EPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAA---------RYADQIVVMHKG 222 (290)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH---------HhCCEEEEEECC
Confidence 99999999865544 445443 348999999976432 123556666644
No 133
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.84 E-value=1.5e-20 Score=172.27 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=110.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+++||+|+||||||||+++|+|...+ .+|.+.++|.++.... .....++++.
T Consensus 17 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-----~~~~~~i~~~ 78 (201)
T cd03231 17 SGLSFTLAA--GEALQVTGPNGSGKTTLLRILAGLSPP-----------LAGRVLLNGGPLDFQR-----DSIARGLLYL 78 (201)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccc-----HHhhhheEEe
Confidence 378888988 779999999999999999999999765 7899999998764221 1112344555
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCC
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD 199 (399)
.|....+....+...+.... .....+.+.+.++.+++ ..++++..||+||+||++++ +++||||++||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWH-ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred ccccccCCCcCHHHHHHhhc-ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 55433332222222211111 11134567788899998 56788999999999999998 99999999999
Q ss_pred HHHHHHHHHHh---hh-CCcEEEEcCCCCH
Q 015822 200 EKLCYQILHEY---KI-HNAEVLFREDATV 225 (399)
Q Consensus 200 ~~~v~~ll~~l---~~-~~~~v~vthd~~~ 225 (399)
......+.+.+ .. ..+++++||+...
T Consensus 158 ~~~~~~l~~~l~~~~~~g~tiii~sH~~~~ 187 (201)
T cd03231 158 KAGVARFAEAMAGHCARGGMVVLTTHQDLG 187 (201)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCchh
Confidence 98655555544 32 3489999998543
No 134
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=7.5e-21 Score=174.04 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=112.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.. +.. .....+++.+
T Consensus 19 ~~s~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~-~~~----~~~~~i~~~~ 80 (200)
T PRK13540 19 QISFHLPA--GGLLHLKGSNGAGKTTLLKLIAGLLNP-----------EKGEILFERQSIKK-DLC----TYQKQLCFVG 80 (200)
T ss_pred eeeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeeEEECCCcccc-CHH----HHHhheEEec
Confidence 77888888 779999999999999999999998765 89999999987642 111 1123345555
Q ss_pred hhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|....... .+.+.+..... . ....+.+.++.+++ ..++++..||+||+||++++ +++||||++
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~-~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFS-P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcC-c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 54333332 33333221111 1 12357788888888 56778899999999999998 999999999
Q ss_pred CCHHHHHHHHHHhh---h-CCcEEEEcCCCCHHHHHHH
Q 015822 198 VDEKLCYQILHEYK---I-HNAEVLFREDATVDDLIDV 231 (399)
Q Consensus 198 LD~~~v~~ll~~l~---~-~~~~v~vthd~~~~~~~~~ 231 (399)
||......+.+.+. . ..+++++||+....+.+|+
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADY 195 (200)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccch
Confidence 99986555444443 2 3489999999776554543
No 135
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=1.9e-20 Score=176.05 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=113.6
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...... .......+++.
T Consensus 18 ~~~s~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~--~~~~~~~i~~~ 82 (240)
T PRK09493 18 HNIDLNIDQ--GEVVVIIGPSGSGKSTLLRCINKLEEI-----------TSGDLIVDGLKVNDPKVD--ERLIRQEAGMV 82 (240)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCChh--HHHHhhceEEE
Confidence 377888888 779999999999999999999998755 899999999876432110 01112345666
Q ss_pred hhhccccCC---hhhhHHHH-h--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIAVSKS---SDIVLMVL-D--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~-d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|....+.. .+.+.+.. . ........+.+.+.++.+|+ .+++++..||+||+||++++ +++||
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 162 (240)
T PRK09493 83 FQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162 (240)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 655443433 23332211 1 11122334567788999998 56888999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCHH
Q 015822 194 PLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 194 pts~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~~ 226 (399)
||++||......+ +..+.. ..+++++||+....
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 199 (240)
T PRK09493 163 PTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA 199 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999999855544 444443 34899999997653
No 136
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.84 E-value=1.4e-20 Score=175.51 Aligned_cols=159 Identities=19% Similarity=0.125 Sum_probs=110.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCCccccceeeeeceEEEECCEeecccCccccccccccC
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH-----SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 126 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~-----~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~ 126 (399)
+++|++.+ |+.++|+|+||||||||+++|+|.. .+ .+|.+.++|.++.-.+. .. ......
T Consensus 18 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-----------~~G~i~~~g~~~~~~~~-~~-~~~~~~ 82 (227)
T cd03260 18 DISLDIPK--GEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-----------DEGEVLLDGKDIYDLDV-DV-LELRRR 82 (227)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcccccCCC-----------CCeEEEECCEEhhhcch-HH-HHHHhh
Confidence 67888887 7899999999999999999999997 44 78999999988654331 00 111234
Q ss_pred cccchhhcccc--CChhhhHHHHhcCC--c-HHHHHHHHHHHHHcCC--ccccc--ccccchhhHhhcCce---------
Q 015822 127 KGRGRQVIAVS--KSSDIVLMVLDASK--S-EGHRQILTKELEAVGL--RLNKR--PPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 127 ~~~~~q~~~~~--~~~d~il~v~d~~~--~-~~~~~~i~~~L~~~gi--~~~~~--~~~LS~g~kqr~~ia--------- 188 (399)
+++.+|....+ .-.+.+.+...... . ....+.+.+.++.+|+ ..++. +..||+||+||++++
T Consensus 83 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 162 (227)
T cd03260 83 VGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEV 162 (227)
T ss_pred EEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 55555554333 11233322211111 1 1134567788999998 34555 599999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCH
Q 015822 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV 225 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~ 225 (399)
+++||||++||......+++.+. ...++|++|||...
T Consensus 163 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 202 (227)
T cd03260 163 LLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQ 202 (227)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHH
Confidence 99999999999986555555443 23589999999764
No 137
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2e-20 Score=175.14 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=112.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+. ....+++.+
T Consensus 17 ~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~~~ 77 (232)
T PRK10771 17 RFDLTVER--GERVAILGPSGAGKSTLLNLIAGFLTP-----------ASGSLTLNGQDHTTTPP------SRRPVSMLF 77 (232)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCeecCcCCh------hhccEEEEe
Confidence 67888887 789999999999999999999999765 88999999987653221 123455555
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.+.++.+|+ .+++.+..||+||+||+.++ +++||||
T Consensus 78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 157 (232)
T PRK10771 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF 157 (232)
T ss_pred cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 55444433 23222211111 112334567888999999 67899999999999999988 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~ 225 (399)
++||......+ +..+.. ..++|++||+...
T Consensus 158 ~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 192 (232)
T PRK10771 158 SALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED 192 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 99999865544 444432 3489999999875
No 138
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.5e-20 Score=181.43 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=120.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCcc-ccccccccCccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEGKGR 129 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~-Gl~~~~~~~~~~ 129 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.|.++|.++...... .. ...+..+++
T Consensus 24 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~~ig~ 89 (286)
T PRK13646 24 HDVNTEFEQ--GKYYAIVGQTGSGKSTLIQNINALLKP-----------TTGTVTVDDITITHKTKDKYI-RPVRKRIGM 89 (286)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchH-HHHHhheEE
Confidence 377888888 789999999999999999999999765 899999999887432110 11 112345677
Q ss_pred chhhc--cccC--ChhhhHHHHhc--CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eee
Q 015822 130 GRQVI--AVSK--SSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 130 ~~q~~--~~~~--~~d~il~v~d~--~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
.+|.. ..+. -.+.+.+.... .......+.+.++|+.+|+ ..++.+..||+||+||++|| +++
T Consensus 90 v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illl 169 (286)
T PRK13646 90 VFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVL 169 (286)
T ss_pred EecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 66653 1221 12333222111 1222334567888999998 35688999999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHH-HHHHHHhhccccccEEEEEecCC
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~-~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
||||++||+.....+ ++.+.. ..++|++|||.... +. ...+++++..-
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~----------~dri~~l~~G~ 223 (286)
T PRK13646 170 DEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARY----------ADEVIVMKEGS 223 (286)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh----------CCEEEEEECCE
Confidence 999999999865544 444442 34999999997643 22 35566766543
No 139
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8.9e-21 Score=178.42 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=113.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.. ...+..+++.+
T Consensus 21 ~~sl~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~~~ 84 (241)
T PRK10895 21 DVSLTVNS--GEIVGLLGPNGAGKTTTFYMVVGIVPR-----------DAGNIIIDDEDISLLPLH---ARARRGIGYLP 84 (241)
T ss_pred eeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHH---HHHHhCeEEec
Confidence 77888888 789999999999999999999999765 899999999887543211 11123456666
Q ss_pred hhccccCCh---hhhHHHHhcC---CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIAVSKSS---DIVLMVLDAS---KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~---~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|....+... +.+.+..... ........+.++++.+++ ..++++..||+||+||+.++ +++|||
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (241)
T PRK10895 85 QEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEP 164 (241)
T ss_pred cCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 654444332 3332221111 122334567888999998 56788999999999999998 999999
Q ss_pred CCCCCHHHHH---HHHHHhhh-CCcEEEEcCCCC
Q 015822 195 LTHVDEKLCY---QILHEYKI-HNAEVLFREDAT 224 (399)
Q Consensus 195 ts~LD~~~v~---~ll~~l~~-~~~~v~vthd~~ 224 (399)
|++||..... +++..+.. ..+++++||+..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 165 FAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 9999998554 45555543 348999999974
No 140
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.84 E-value=1.1e-20 Score=176.21 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=112.7
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+.. .....+++.
T Consensus 24 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~ 86 (225)
T PRK10247 24 NNISFSLRA--GEFKLITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDISTLKPE----IYRQQVSYC 86 (225)
T ss_pred eccEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEcCcCCHH----HHHhccEEE
Confidence 378888888 779999999999999999999998755 899999999877543321 112345555
Q ss_pred hhhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCCC
Q 015822 131 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpts 196 (399)
+|....+.. .+.+.+.............+.+.|+.+++ ..++++..||+||+||++++ +++||||+
T Consensus 87 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 87 AQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred ecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 555433322 23232221111111223456788999988 35788999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHH
Q 015822 197 HVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 226 (399)
Q Consensus 197 ~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~ 226 (399)
+||......+ +.++.. ..+++++||+....
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI 201 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH
Confidence 9999865544 444432 34899999997653
No 141
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.1e-20 Score=177.37 Aligned_cols=158 Identities=22% Similarity=0.250 Sum_probs=111.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+.... ...++++.+
T Consensus 23 ~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~ 86 (255)
T PRK11300 23 NVNLEVRE--QEIVSLIGPNGAGKTTVFNCLTGFYKP-----------TGGTILLRGQHIEGLPGHQI---ARMGVVRTF 86 (255)
T ss_pred eeeeEEcC--CeEEEEECCCCCCHHHHHHHHhCCcCC-----------CcceEEECCEECCCCCHHHH---HhcCeEEec
Confidence 77888888 789999999999999999999999765 89999999988754332111 122344445
Q ss_pred hhccccCCh---hhhHHHH----------hcC-----Cc--HHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce-
Q 015822 132 QVIAVSKSS---DIVLMVL----------DAS-----KS--EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS- 188 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~----------d~~-----~~--~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia- 188 (399)
|....+... +.+.+.. +.. .. ......+.+.++.+|+ ..++++..||+||+||+.++
T Consensus 87 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~ 166 (255)
T PRK11300 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIAR 166 (255)
T ss_pred cCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHH
Confidence 544433332 2222210 000 00 1123456778888998 67899999999999999998
Q ss_pred --------eeeccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCH
Q 015822 189 --------FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 189 --------li~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~ 225 (399)
+++||||++||......+ +..+.. ..+++++||+...
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~ 216 (255)
T PRK11300 167 CMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL 216 (255)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 999999999999855544 444433 3489999999764
No 142
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.3e-20 Score=180.22 Aligned_cols=174 Identities=20% Similarity=0.150 Sum_probs=120.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|+||||||||+++|+|...+ ..|.+.++|.++.-.. ++.. .....+++.+
T Consensus 25 ~vs~~i~~--Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~~~~-~~~~~ig~v~ 89 (287)
T PRK13637 25 NVNIEIED--GEFVGLIGHTGSGKSTLIQHLNGLLKP-----------TSGKIIIDGVDITDKK-VKLS-DIRKKVGLVF 89 (287)
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CccEEEECCEECCCcC-ccHH-HHhhceEEEe
Confidence 77888888 789999999999999999999999765 8999999998875321 1110 1123456666
Q ss_pred hhcc--ccC--ChhhhHHHHhc--CCcHHHHHHHHHHHHHcCCc----ccccccccchhhHhhcCce---------eeec
Q 015822 132 QVIA--VSK--SSDIVLMVLDA--SKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 132 q~~~--~~~--~~d~il~v~d~--~~~~~~~~~i~~~L~~~gi~----~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
|... .+. -.+.+.+.... ..+....+.+.+.|+.+|+. .++++..||+||+||++|| +++|
T Consensus 90 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 90 QYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6431 111 13333322111 12223345678889999983 6788999999999999998 9999
Q ss_pred cCCCCCCHHHHH---HHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 193 LPLTHVDEKLCY---QILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 193 Epts~LD~~~v~---~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
|||++||..... ++++++.. ..++|++|||..... .+...+++++..-
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~---------~~~drv~~l~~G~ 222 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVA---------KLADRIIVMNKGK 222 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH---------HhCCEEEEEECCE
Confidence 999999998544 44555543 348999999976432 1235566666543
No 143
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.84 E-value=1.8e-20 Score=171.22 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=109.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.... ......+++.+
T Consensus 18 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-----~~~~~~i~~~~ 79 (198)
T TIGR01189 18 GLSFTLNA--GEALQVTGPNGIGKTTLLRILAGLLRP-----------DSGEVRWNGTALAEQR-----DEPHRNILYLG 79 (198)
T ss_pred eeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccch-----HHhhhheEEec
Confidence 67888888 779999999999999999999998765 7899999998765321 11123345555
Q ss_pred hhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|....+.. .+.+.+....... ....+.+.++.+++ ..++++..||+||+||++++ +++||||++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGG--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCC--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 54333332 3333222222221 13357788888998 57888999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhh---h-CCcEEEEcCCCC
Q 015822 198 VDEKLCYQILHEYK---I-HNAEVLFREDAT 224 (399)
Q Consensus 198 LD~~~v~~ll~~l~---~-~~~~v~vthd~~ 224 (399)
||......+.+.+. . ..+++++||+..
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 99986555544443 2 348999999863
No 144
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.2e-20 Score=175.88 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=112.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. .....+++.+
T Consensus 19 ~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~~ 81 (242)
T cd03295 19 NLNLEIAK--GEFLVLIGPSGSGKTTTMKMINRLIEP-----------TSGEIFIDGEDIREQDPV----ELRRKIGYVI 81 (242)
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCeEcCcCChH----HhhcceEEEc
Confidence 67888888 779999999999999999999998765 789999999876533321 1123456666
Q ss_pred hhccccCCh---hhhHHHHhc--CCcHHHHHHHHHHHHHcCCc----ccccccccchhhHhhcCce---------eeecc
Q 015822 132 QVIAVSKSS---DIVLMVLDA--SKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~--~~~~~~~~~i~~~L~~~gi~----~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
|....+... +.+.+.... .......+.+.+.++.+++. .++++..||+||+||++++ +++||
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 161 (242)
T cd03295 82 QQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE 161 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 654444332 333222111 12223345678889999883 4778899999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhhh--CCcEEEEcCCCCH
Q 015822 194 PLTHVDEKLCYQILH---EYKI--HNAEVLFREDATV 225 (399)
Q Consensus 194 pts~LD~~~v~~ll~---~l~~--~~~~v~vthd~~~ 225 (399)
||++||......+++ .+.. ..++|++||+...
T Consensus 162 Pt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~ 198 (242)
T cd03295 162 PFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE 198 (242)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 999999986555544 4432 3489999999753
No 145
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=9.6e-21 Score=187.28 Aligned_cols=204 Identities=23% Similarity=0.294 Sum_probs=144.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCcc--c--chhhccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--R--GRQVIAV 136 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~--~--~~q~~~~ 136 (399)
..++||||.||+|||||+|+|+|.+ +.|++.||||||+....+.++|..+.++||+|+++...-..+ . .......
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 4699999999999999999999999 579999999999999999999999999999999865432111 1 1223345
Q ss_pred cCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcE
Q 015822 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (399)
Q Consensus 137 ~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~ 216 (399)
+..+|++++|+|++.+..+++.
T Consensus 258 I~~a~vvllviDa~~~~~~qD~---------------------------------------------------------- 279 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDL---------------------------------------------------------- 279 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHH----------------------------------------------------------
Confidence 5678888888888776433221
Q ss_pred EEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh--hhHHHH----H------cCCCEEEecchhccchHHHHHHHH
Q 015822 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDVDKL----A------RQPNSVVISCNLKLNLDRLLARMW 284 (399)
Q Consensus 217 v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~--~~~~~l----~------~~~~~i~vSa~~~~gl~~L~~~i~ 284 (399)
.++..+. ...++.++|+||||+... ...+.. . .+.++++|||+++.+++.|++.+.
T Consensus 280 ----------~ia~~i~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~ 347 (444)
T COG1160 280 ----------RIAGLIE--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIK 347 (444)
T ss_pred ----------HHHHHHH--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHH
Confidence 0111111 124799999999998754 222221 1 245699999999999998877664
Q ss_pred HHhCc--eEEEe-------------CCC----CC--------CCCCCCcEEeecCCCCCCHHHHHHHHHHHHhhccceeE
Q 015822 285 EEMGL--VRVYT-------------KPQ----GQ--------QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVL 337 (399)
Q Consensus 285 ~~l~~--i~~~~-------------~~~----~~--------~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~ 337 (399)
+.... .++=| .+| |. .....+|.++-. +..++.+-+.+.++|.+.|+.++
T Consensus 348 ~~~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf---~N~~~~~~~sY~RyL~n~~R~~f 424 (444)
T COG1160 348 EIYECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLF---GNRPKALHFSYKRYLENRLRKAF 424 (444)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCCCCCEEEEE---ecchhhCchHHHHHHHHHHHHHc
Confidence 43321 00100 000 11 124556777777 88899999999999999999998
Q ss_pred E
Q 015822 338 V 338 (399)
Q Consensus 338 ~ 338 (399)
.
T Consensus 425 ~ 425 (444)
T COG1160 425 G 425 (444)
T ss_pred C
Confidence 7
No 146
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.84 E-value=2.5e-20 Score=177.14 Aligned_cols=176 Identities=18% Similarity=0.165 Sum_probs=120.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCc-cc--------cccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PG--------IIEG 122 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~-~G--------l~~~ 122 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++..+.. .+ -...
T Consensus 23 ~is~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
T PRK10619 23 GVSLQANA--GDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGSIVVNGQTINLVRDKDGQLKVADKNQLRL 89 (257)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccccccccccccchHHHH
Confidence 77888887 789999999999999999999999755 78999999987643110 00 0011
Q ss_pred cccCcccchhhccccCCh---hhhHHHH-hc--CCcHHHHHHHHHHHHHcCC--c-ccccccccchhhHhhcCce-----
Q 015822 123 ASEGKGRGRQVIAVSKSS---DIVLMVL-DA--SKSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS----- 188 (399)
Q Consensus 123 ~~~~~~~~~q~~~~~~~~---d~il~v~-d~--~~~~~~~~~i~~~L~~~gi--~-~~~~~~~LS~g~kqr~~ia----- 188 (399)
....+++.+|....+... +.+.+.. .. .........+.+.++.+|+ . .++++..||+||+||++++
T Consensus 90 ~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~ 169 (257)
T PRK10619 90 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM 169 (257)
T ss_pred HhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 234566666655444432 3332211 11 1222334567888999998 3 3788999999999999998
Q ss_pred ----eeeccCCCCCCHHHHHHHHH---Hhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 189 ----FNSTLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 189 ----li~DEpts~LD~~~v~~ll~---~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
+++||||++||......+.+ ++.. ..+++++|||.....- ....+++++...
T Consensus 170 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~---------~~d~i~~l~~G~ 229 (257)
T PRK10619 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH---------VSSHVIFLHQGK 229 (257)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hcCEEEEEECCE
Confidence 99999999999986555444 4443 3489999999764331 134566666543
No 147
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.84 E-value=2.6e-20 Score=173.52 Aligned_cols=161 Identities=20% Similarity=0.205 Sum_probs=110.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. .....+..+++.
T Consensus 22 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~-~~~~~~~~i~~~ 87 (228)
T cd03257 22 DDVSFSIKK--GETLGLVGESGSGKSTLARAILGLLKP-----------TSGSIIFDGKDLLKLSRR-LRKIRRKEIQMV 87 (228)
T ss_pred cCceeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccchh-hHHHhhccEEEE
Confidence 377888888 779999999999999999999998765 899999999876533210 001112345555
Q ss_pred hhhcc--ccCC---hhhhHHHHhcCC--c-HHHHHH-HHHHHHHcCC---cccccccccchhhHhhcCce---------e
Q 015822 131 RQVIA--VSKS---SDIVLMVLDASK--S-EGHRQI-LTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 131 ~q~~~--~~~~---~d~il~v~d~~~--~-~~~~~~-i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
+|... .... .+.+.+...... . ...... ..+.++.+++ .+++++..||+||+||+.++ +
T Consensus 88 ~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 167 (228)
T cd03257 88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLL 167 (228)
T ss_pred ecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEE
Confidence 55431 1222 233333222211 1 111122 2477888887 35788999999999999998 9
Q ss_pred eeccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCH
Q 015822 190 NSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 190 i~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~ 225 (399)
++||||++||......+ +.++.. ..+++++||+...
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 208 (228)
T cd03257 168 IADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV 208 (228)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999999999865544 444443 3589999999764
No 148
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=1.1e-20 Score=176.41 Aligned_cols=151 Identities=23% Similarity=0.329 Sum_probs=119.3
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.++||++.+ |+.+||||.+|||||||-++|+|...| +.|.|.++|.++..++
T Consensus 30 d~Vsf~i~~--ge~~glVGESG~GKSTlgr~i~~L~~p-----------t~G~i~f~g~~i~~~~--------------- 81 (268)
T COG4608 30 DGVSFSIKE--GETLGLVGESGCGKSTLGRLILGLEEP-----------TSGEILFEGKDITKLS--------------- 81 (268)
T ss_pred cceeEEEcC--CCEEEEEecCCCCHHHHHHHHHcCcCC-----------CCceEEEcCcchhhcc---------------
Confidence 378999999 779999999999999999999999866 9999999998764332
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCCCCC
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpts~L 198 (399)
.....+++.+.|+.+|+ .++++|++|||||+||++|| +++|||+|+|
T Consensus 82 ---------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 82 ---------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred ---------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhc
Confidence 23345678899999998 78999999999999999998 9999999999
Q ss_pred CHH---HHHHHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH
Q 015822 199 DEK---LCYQILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (399)
Q Consensus 199 D~~---~v~~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l 259 (399)
|.. .+..+|..++. .-+.++++||+.....+ .+.+.|+...-++.....+.+
T Consensus 141 DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i---------sdri~VMy~G~iVE~g~~~~~ 197 (268)
T COG4608 141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI---------SDRIAVMYLGKIVEIGPTEEV 197 (268)
T ss_pred chhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh---------cccEEEEecCceeEecCHHHH
Confidence 985 66777777763 34899999998876532 245666665544433333333
No 149
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=190.80 Aligned_cols=192 Identities=20% Similarity=0.158 Sum_probs=137.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.++||++.+ |+.+||||.+||||||+.++|.|....-. ....|.|.++|.++.-++..+...-....+++.
T Consensus 26 ~~vsf~v~~--GE~lgIvGESGsGKSt~a~~i~gll~~~~-------~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i 96 (539)
T COG1123 26 RDVSFEVEP--GEILGIVGESGSGKSTLALALMGLLPEGG-------RITSGEVILDGRDLLGLSEREMRKLRGKRIAMI 96 (539)
T ss_pred ecceEEecC--CcEEEEEcCCCCCHHHHHHHHhccCCCCC-------cccceEEEECCcchhcCCHHHHHHhccccEEEE
Confidence 488999999 78999999999999999999999986511 125899999999766555554444344556677
Q ss_pred hhhc-cccCCh----hhhHHHHhcC---CcHHHHHHHHHHHHHcCC--cc--cccccccchhhHhhcCce---------e
Q 015822 131 RQVI-AVSKSS----DIVLMVLDAS---KSEGHRQILTKELEAVGL--RL--NKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 131 ~q~~-~~~~~~----d~il~v~d~~---~~~~~~~~i~~~L~~~gi--~~--~~~~~~LS~g~kqr~~ia---------l 189 (399)
+|.. ..+... +-|.-+.... ...+...++.++|+.+|+ .. +++|++|||||+||+.|| |
T Consensus 97 ~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LL 176 (539)
T COG1123 97 FQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLL 176 (539)
T ss_pred ecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEE
Confidence 7753 233332 1122222222 245567788999999999 22 469999999999999988 9
Q ss_pred eeccCCCCCCHHHHHHHHH---Hhh-hCC-cEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH
Q 015822 190 NSTLPLTHVDEKLCYQILH---EYK-IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~---~l~-~~~-~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~ 260 (399)
++||||++||.....++|+ .+. ..+ ++++||||+.+..- ....++|+.+..++.....+.+.
T Consensus 177 IaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~---------~aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAE---------LADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred EECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHH---------hcCeEEEEECCEEEEecCHHHHH
Confidence 9999999999985555554 444 233 89999999876441 24778999999877554444443
No 150
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.84 E-value=3e-20 Score=175.48 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=119.3
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...|... -+..|.+.++|.++..... . ....+..+++.
T Consensus 18 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~------~~~~G~i~~~g~~~~~~~~-~-~~~~~~~i~~v 87 (247)
T TIGR00972 18 KNINLDIPK--NQVTALIGPSGCGKSTLLRSLNRMNDLVPG------VRIEGKVLFDGQDIYDKKI-D-VVELRRRVGMV 87 (247)
T ss_pred cceeEEECC--CCEEEEECCCCCCHHHHHHHHhccCCCCcC------CCCceEEEECCEEcccccc-c-hHHHHhheEEE
Confidence 377888887 789999999999999999999999765000 0128999999987643110 0 11123456666
Q ss_pred hhhccccC--ChhhhHHHHhcC---CcHHHHHHHHHHHHHcCCc------ccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSK--SSDIVLMVLDAS---KSEGHRQILTKELEAVGLR------LNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~--~~d~il~v~d~~---~~~~~~~~i~~~L~~~gi~------~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+. -.+.+.+..... ......+.+.+.++.+|+. +++++..||+||+||+.++ ++
T Consensus 88 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 167 (247)
T TIGR00972 88 FQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL 167 (247)
T ss_pred ecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 66543332 123333222211 1222345677888888873 5678899999999999988 99
Q ss_pred eccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCHH-HHHHHHhhccccccEEEEEecCC
Q 015822 191 STLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~~-~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
+||||++||......+++ .+....+++++||+.... .+ ...+++++..-
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~----------~d~i~~l~~G~ 220 (247)
T TIGR00972 168 LDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARI----------SDRTAFFYDGE 220 (247)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHh----------CCEEEEEECCE
Confidence 999999999986555444 443335899999997643 32 34566666543
No 151
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.8e-20 Score=178.25 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=111.9
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+. .. ......+++.
T Consensus 18 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~-~~-~~~~~~i~~v 82 (271)
T PRK13638 18 KGLNLDFSL--SPVTGLVGANGCGKSTLFMNLSGLLRP-----------QKGAVLWQGKPLDYSKR-GL-LALRQQVATV 82 (271)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CccEEEECCEEcccccC-CH-HHHHhheEEE
Confidence 377888888 779999999999999999999998765 89999999988742211 11 0112345555
Q ss_pred hhhcc--ccC--ChhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIA--VSK--SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~--~~~--~~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|... .+. -.+.+.+..... ......+.+.+.++.+|+ ..++++..||+||+||++++ +++||
T Consensus 83 ~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE 162 (271)
T PRK13638 83 FQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE 162 (271)
T ss_pred eeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 55432 111 122222221111 222233457788899998 57888999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCHH
Q 015822 194 PLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 194 pts~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~~ 226 (399)
||++||......+ +..+.. ..++|++|||....
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 199 (271)
T PRK13638 163 PTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI 199 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 9999999865444 444443 34899999997653
No 152
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.84 E-value=5.8e-20 Score=195.65 Aligned_cols=146 Identities=17% Similarity=0.163 Sum_probs=103.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+++||+|+|||||||||++|+|...| ..|.+.+ |..+. +++..
T Consensus 337 ~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~-~~~~~--------------i~y~~ 388 (635)
T PRK11147 337 DFSAQVQR--GDKIALIGPNGCGKTTLLKLMLGQLQA-----------DSGRIHC-GTKLE--------------VAYFD 388 (635)
T ss_pred CcEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEE-CCCcE--------------EEEEe
Confidence 66777777 789999999999999999999998765 7899988 43221 12222
Q ss_pred hhc-cccCChhhhHHHHhcC---CcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVI-AVSKSSDIVLMVLDAS---KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~-~~~~~~d~il~v~d~~---~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|.. .......+.-.+.... ........+.+.|..+++ ..++++..||+||+||++++ |++||||
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt 468 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 321 1122222222221111 001113457788889988 46889999999999999988 9999999
Q ss_pred CCCCHHHHHHHHHHhh-hCCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQILHEYK-IHNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll~~l~-~~~~~v~vthd~~~ 225 (399)
++||......+.+.+. +.+++|++|||...
T Consensus 469 ~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~ 499 (635)
T PRK11147 469 NDLDVETLELLEELLDSYQGTVLLVSHDRQF 499 (635)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 9999998777766665 45699999999654
No 153
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.84 E-value=4.7e-20 Score=170.34 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=112.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. + .....+++.+
T Consensus 16 ~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~--~----~~~~~i~~v~ 76 (213)
T TIGR01277 16 EFDLNVAD--GEIVAIMGPSGAGKSTLLNLIAGFIEP-----------ASGSIKVNDQSHTGL--A----PYQRPVSMLF 76 (213)
T ss_pred eeEEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEcccC--C----hhccceEEEe
Confidence 67777877 789999999999999999999999765 899999999876421 1 1123456666
Q ss_pred hhccccCCh---hhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+... +.+.+..... ......+.+.+.|+.+|+ ..++.+..||+||+||+.++ +++||||
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 156 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 665444432 3333222111 112234567788999998 57888999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQ---ILHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~ 225 (399)
++||...... ++..+.. ..+++++||+...
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~ 191 (213)
T TIGR01277 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD 191 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999986554 4444432 3489999999764
No 154
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.84 E-value=3.5e-20 Score=175.56 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=113.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccC---cccc------ccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---LPGI------IEG 122 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD---~~Gl------~~~ 122 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++..++ ..+. ...
T Consensus 18 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~ 84 (252)
T TIGR03005 18 GLNFSVAA--GEKVALIGPSGSGKSTILRILMTLEPI-----------DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQ 84 (252)
T ss_pred eeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccccccchhHHHH
Confidence 77888888 779999999999999999999998765 8999999998775332 0000 011
Q ss_pred cccCcccchhhccccCCh---hhhHHHH-h--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce------
Q 015822 123 ASEGKGRGRQVIAVSKSS---DIVLMVL-D--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------ 188 (399)
Q Consensus 123 ~~~~~~~~~q~~~~~~~~---d~il~v~-d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia------ 188 (399)
....+++.+|....+... +.+.+.. . ........+.+.+.|+.+|+ .+++.+..||+||+||++++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (252)
T TIGR03005 85 MRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMR 164 (252)
T ss_pred HhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcC
Confidence 234456666655444432 3332211 1 11222234467788999998 67788999999999999998
Q ss_pred ---eeeccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCH
Q 015822 189 ---FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 189 ---li~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~ 225 (399)
+++||||++||......+ ++.+.. ..++|++||+...
T Consensus 165 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 209 (252)
T TIGR03005 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF 209 (252)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 899999999999855544 444432 3489999999764
No 155
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.84 E-value=2.8e-20 Score=177.65 Aligned_cols=176 Identities=19% Similarity=0.220 Sum_probs=120.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+.... ......+++.+
T Consensus 29 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~v~ 94 (265)
T TIGR02769 29 NVSLSIEE--GETVGLLGRSGCGKSTLARLLLGLEKP-----------AQGTVSFRGQDLYQLDRKQR-RAFRRDVQLVF 94 (265)
T ss_pred CceeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEccccCHHHH-HHHhhceEEEe
Confidence 78888888 789999999999999999999999765 89999999987754332110 01123456665
Q ss_pred hhcc--ccCC---hhhhHHHHhc---CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIA--VSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~--~~~~---~d~il~v~d~---~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|... .... .+.+.+.... .......+.+.+.++.+|+ ..++++..||+||+||++++ +++
T Consensus 95 q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illL 174 (265)
T TIGR02769 95 QDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVL 174 (265)
T ss_pred cChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5431 1222 2333222211 1222334567888999998 35788999999999999998 999
Q ss_pred ccCCCCCCHHH---HHHHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 192 TLPLTHVDEKL---CYQILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 192 DEpts~LD~~~---v~~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||||++||... +.++++.+.. ..++|++|||...... ....++++++..+
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~---------~~d~i~~l~~G~i 229 (265)
T TIGR02769 175 DEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQS---------FCQRVAVMDKGQI 229 (265)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH---------HhcEEEEEeCCEE
Confidence 99999999985 4455555543 3489999999765331 2355667766543
No 156
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.84 E-value=2.2e-20 Score=189.93 Aligned_cols=184 Identities=18% Similarity=0.236 Sum_probs=129.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++||++.+ |+++||||.+|||||||.++|+|...| ..|.+.++|.++. ++ .+-.......+.+++
T Consensus 309 ~VSf~l~~--GE~lglVGeSGsGKSTlar~i~gL~~P-----------~~G~i~~~g~~~~-~~-~~~~~~~r~~~QmvF 373 (539)
T COG1123 309 DVSFDLRE--GETLGLVGESGSGKSTLARILAGLLPP-----------SSGSIIFDGQDLD-LT-GGELRRLRRRIQMVF 373 (539)
T ss_pred eeeeEecC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEEeCcccc-cc-cchhhhhhhheEEEE
Confidence 88999998 789999999999999999999999876 8999999998722 22 221112233444555
Q ss_pred hhc--cccCChhh---hHHHHhcCC---cHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eee
Q 015822 132 QVI--AVSKSSDI---VLMVLDASK---SEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~--~~~~~~d~---il~v~d~~~---~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|.. +..+...+ +...+.... .....+++.++|+.+|+ .++++|++|||||+||++|| +++
T Consensus 374 Qdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~ 453 (539)
T COG1123 374 QDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLIL 453 (539)
T ss_pred eCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEe
Confidence 543 22233322 222222111 23334568899999999 68999999999999999999 999
Q ss_pred ccCCCCCCHH---HHHHHHHHhh--hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH
Q 015822 192 TLPLTHVDEK---LCYQILHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (399)
Q Consensus 192 DEpts~LD~~---~v~~ll~~l~--~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l 259 (399)
|||||.||.. .+.++|..++ +.-|.++||||+..... ....++|+.+.-++.....+.+
T Consensus 454 DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~---------i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY---------IADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh---------hCceEEEEECCeEEEeCCHHHH
Confidence 9999999987 4555566665 33499999999876442 2467888888766533333333
No 157
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.6e-20 Score=176.88 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=111.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..- ....+++.+
T Consensus 29 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~ 91 (265)
T PRK10575 29 PLSLTFPA--GKVTGLIGHNGSGKSTLLKMLGRHQPP-----------SEGEILLDAQPLESWSSKA----FARKVAYLP 91 (265)
T ss_pred eeeeEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEehhhCCHHH----HhhheEEec
Confidence 77888888 779999999999999999999998755 8999999998764332211 122355555
Q ss_pred hhccccCChhhhHHHHhc----C-----CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKSSDIVLMVLDA----S-----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~----~-----~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+....+.-.+... . ......+.+.+.|+.+++ .+++++..||+||+||++++ +++
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL 171 (265)
T PRK10575 92 QQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLL 171 (265)
T ss_pred cCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 543333322222221110 0 112234567888999998 67889999999999999998 999
Q ss_pred ccCCCCCCHHHHH---HHHHHhhh--CCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCY---QILHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~---~ll~~l~~--~~~~v~vthd~~~ 225 (399)
||||++||..... +++..+.. ..++|++||+...
T Consensus 172 DEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~ 210 (265)
T PRK10575 172 DEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM 210 (265)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999998654 45555542 3589999999764
No 158
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.84 E-value=3.8e-20 Score=175.79 Aligned_cols=171 Identities=17% Similarity=0.178 Sum_probs=118.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||+|||||+++|+|...+ ..|.+.++|.++...+..- ....+++..
T Consensus 19 ~is~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~ 81 (256)
T TIGR03873 19 GVDVTAPP--GSLTGLLGPNGSGKSTLLRLLAGALRP-----------DAGTVDLAGVDLHGLSRRA----RARRVALVE 81 (256)
T ss_pred eeeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEEcccCCHHH----HhhheEEec
Confidence 77888888 789999999999999999999998765 8899999998875433211 112345555
Q ss_pred hhccccCC---hhhhHHHH-hc-----CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS---SDIVLMVL-DA-----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~-d~-----~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+.. .. .......+.+.+.++.+++ ..++.+..||+||+||++++ +++
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 54332222 22222210 00 0112234567888999998 57889999999999999998 999
Q ss_pred ccCCCCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 192 TLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 192 DEpts~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
||||++||...... +++.+.. ..+++++||+..... .....+++++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~---------~~~d~i~~l~~G 213 (256)
T TIGR03873 162 DEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA---------SYCDHVVVLDGG 213 (256)
T ss_pred cCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH---------HhCCEEEEEeCC
Confidence 99999999985544 4444443 348999999976542 123556666654
No 159
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.5e-20 Score=176.95 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=112.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+...+ ...+++.+
T Consensus 25 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~ 87 (265)
T PRK10253 25 NLTVEIPD--GHFTAIIGPNGCGKSTLLRTLSRLMTP-----------AHGHVWLDGEHIQHYASKEV----ARRIGLLA 87 (265)
T ss_pred ecceEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEEhhhCCHHHH----hhheEEee
Confidence 78888888 779999999999999999999998765 78999999987754332211 12355666
Q ss_pred hhccccCChhhhHHHHh---cC------CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKSSDIVLMVLD---AS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d---~~------~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+....+...+.. .. ........+.+.++.+++ ..++.+..||+||+||+.++ +++
T Consensus 88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 167 (265)
T PRK10253 88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLL 167 (265)
T ss_pred ccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 65443333222211111 00 112234467788999998 67899999999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~ 225 (399)
||||++||......+++.+ .. ..++|++||+...
T Consensus 168 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~ 206 (265)
T PRK10253 168 DEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ 206 (265)
T ss_pred eCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999998655554444 32 3489999999764
No 160
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.83 E-value=4.8e-20 Score=173.47 Aligned_cols=161 Identities=18% Similarity=0.124 Sum_probs=110.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|.... .|.+|.+.++|.++.-.+... ....++++.+
T Consensus 18 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------~~~~G~i~~~g~~~~~~~~~~---~~~~~i~~v~ 83 (243)
T TIGR01978 18 GVNLTVKK--GEIHAIMGPNGSGKSTLSKTIAGHPSY---------EVTSGTILFKGQDLLELEPDE---RARAGLFLAF 83 (243)
T ss_pred ccceEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC---------CCCcceEEECCEecCCCCHHH---hhccceEeee
Confidence 77888888 789999999999999999999998410 137899999998775433211 1122345555
Q ss_pred hhccccCCh---hhhHHHHhcC---------CcHHHHHHHHHHHHHcCC---ccccccc-ccchhhHhhcCce-------
Q 015822 132 QVIAVSKSS---DIVLMVLDAS---------KSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------- 188 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~---------~~~~~~~~i~~~L~~~gi---~~~~~~~-~LS~g~kqr~~ia------- 188 (399)
|....+... +.+....... ......+.+.+.++.+++ ..++.+. .||+||+||+.++
T Consensus 84 q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p 163 (243)
T TIGR01978 84 QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP 163 (243)
T ss_pred ccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCC
Confidence 554444332 2222222111 111223467788888988 2466676 5999999999998
Q ss_pred --eeeccCCCCCCHHHHHHHHH---Hhhh-CCcEEEEcCCCCHH
Q 015822 189 --FNSTLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~ll~---~l~~-~~~~v~vthd~~~~ 226 (399)
+++||||++||......+++ ++.. ..+++++|||....
T Consensus 164 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~ 207 (243)
T TIGR01978 164 KLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLL 207 (243)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH
Confidence 99999999999986555544 4433 34899999997654
No 161
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.6e-20 Score=174.54 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=114.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+..+ .|.+|.+.++|.++.-.+.. .....+++.
T Consensus 20 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~------~~~~G~i~~~g~~i~~~~~~----~~~~~i~~v 87 (250)
T PRK14247 20 DGVNLEIPD--NTITALMGPSGSGKSTLLRVFNRLIELYPE------ARVSGEVYLDGQDIFKMDVI----ELRRRVQMV 87 (250)
T ss_pred ecceeEEcC--CCEEEEECCCCCCHHHHHHHHhccCCCCCC------CCCceEEEECCEECCcCCHH----HHhccEEEE
Confidence 377888888 779999999999999999999998743000 13689999999877433211 123456666
Q ss_pred hhhccccCC---hhhhHHHHhcC----CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------
Q 015822 131 RQVIAVSKS---SDIVLMVLDAS----KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~----~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia--------- 188 (399)
+|....+.. .+.+.+..... ......+.+.+.|+.+++ .+++.+..||+||+||++++
T Consensus 88 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 167 (250)
T PRK14247 88 FQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEV 167 (250)
T ss_pred eccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 665443433 33333222111 112234567788898887 25788999999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCH
Q 015822 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV 225 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~ 225 (399)
+++||||++||......+.+.+. ...++|++||+...
T Consensus 168 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 207 (250)
T PRK14247 168 LLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQ 207 (250)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999986555544443 33589999999764
No 162
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.8e-20 Score=174.58 Aligned_cols=173 Identities=17% Similarity=0.113 Sum_probs=116.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+... .....+++.
T Consensus 22 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~~ 85 (237)
T PRK11614 22 HEVSLHINQ--GEIVTLIGANGAGKTTLLGTLCGDPRA-----------TSGRIVFDGKDITDWQTAK---IMREAVAIV 85 (237)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEecCCCCHHH---HHHhCEEEe
Confidence 377888888 789999999999999999999999765 8999999998764332110 112345555
Q ss_pred hhhccccCCh---hhhHHHHhcCCcHHHHHHHHHHHHHc-CC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 131 RQVIAVSKSS---DIVLMVLDASKSEGHRQILTKELEAV-GL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 131 ~q~~~~~~~~---d~il~v~d~~~~~~~~~~i~~~L~~~-gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
+|....+... +.+.+.............+.+.++.+ ++ ..++++..||+||+||+.++ +++||||
T Consensus 86 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 86 PEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred ccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 5554444432 22222111111112233455666666 35 45678899999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCH-HHHHHHHhhccccccEEEEEecCC
Q 015822 196 THVDEKLCYQI---LHEYKI-HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~-~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
++||......+ ++.+.. ..+++++||+... .++ ...++++++.-
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~----------~d~i~~l~~G~ 214 (237)
T PRK11614 166 LGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKL----------ADRGYVLENGH 214 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhh----------CCEEEEEeCCE
Confidence 99999865544 444443 3489999999753 332 35566666543
No 163
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.83 E-value=2.8e-20 Score=193.03 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=116.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.. |++++|+||||||||||+++|+|...+ .+|.+.++|.++...+... ..+..+++.+
T Consensus 22 ~is~~i~~--Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~v~ 85 (501)
T PRK10762 22 GAALNVYP--GRVMALVGENGAGKSTMMKVLTGIYTR-----------DAGSILYLGKEVTFNGPKS---SQEAGIGIIH 85 (501)
T ss_pred eeeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHH---HHhCCEEEEE
Confidence 77888887 789999999999999999999999765 8999999998874322111 1123466666
Q ss_pred hhccccCChhhhHHHHhc---------CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKSSDIVLMVLDA---------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~---------~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+....+...+... .........+.+.|+.+|+ ..++++.+||+||+||++|| +++
T Consensus 86 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 165 (501)
T PRK10762 86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIM 165 (501)
T ss_pred cchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 655444433332222111 0112223467888999998 56888999999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhhC-CcEEEEcCCCCHH-HHHH
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDATVD-DLID 230 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~~-~~~v~vthd~~~~-~~~~ 230 (399)
||||++||......+ +..+... .++|++|||.... .++|
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d 209 (501)
T PRK10762 166 DEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICD 209 (501)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 999999999855555 4555433 4899999997653 3443
No 164
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.83 E-value=1.8e-20 Score=174.43 Aligned_cols=163 Identities=18% Similarity=0.118 Sum_probs=110.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC--CE--eecccCccccccccccC
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DT--KIQLLDLPGIIEGASEG 126 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~--g~--~i~~iD~~Gl~~~~~~~ 126 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++ |. ++.-.+...+.......
T Consensus 25 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~ 91 (224)
T TIGR02324 25 KNVSLTVNA--GECVALSGPSGAGKSTLLKSLYANYLP-----------DSGRILVRHEGAWVDLAQASPREVLEVRRKT 91 (224)
T ss_pred ecceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEEecCCCccchhhcCHHHHHHHHhcc
Confidence 377888888 789999999999999999999999765 78999997 42 33212111110011234
Q ss_pred cccchhhccccCCh---hhhHHHHh--cCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------e
Q 015822 127 KGRGRQVIAVSKSS---DIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 127 ~~~~~q~~~~~~~~---d~il~v~d--~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
+++.+|....+... +.+..... ........+.+.+.++.+|+ ..++++..||+||+||++++ +
T Consensus 92 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 171 (224)
T TIGR02324 92 IGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPIL 171 (224)
T ss_pred eEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 56666655444332 22222111 11122234567788899998 24678999999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---h-CCcEEEEcCCCCHH
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---I-HNAEVLFREDATVD 226 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~-~~~~v~vthd~~~~ 226 (399)
++||||++||......+++.+. . ..+++++||+....
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 172 LLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVR 212 (224)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999986555555443 3 34899999996543
No 165
>PRK11058 GTPase HflX; Provisional
Probab=99.83 E-value=9.4e-21 Score=191.62 Aligned_cols=196 Identities=22% Similarity=0.274 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCCcceEEEE-eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeece
Q 015822 24 EYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTK-FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG 102 (399)
Q Consensus 24 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~v~~-~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G 102 (399)
+...+.++.++++++++++...+.+..+. .... .+-..|+|+|+||||||||||+|++....++++||||+|+..+
T Consensus 161 e~d~r~i~~ri~~l~~~L~~~~~~r~~~r---~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~ 237 (426)
T PRK11058 161 ETDRRLLRNRIVQILSRLERVEKQREQGR---RARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLR 237 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceE
Confidence 33445677888888777655433221110 0011 1124899999999999999999999887789999999999999
Q ss_pred EEEECCE-eecccCccccccc-cccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchh
Q 015822 103 IIHYNDT-KIQLLDLPGIIEG-ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180 (399)
Q Consensus 103 ~i~~~g~-~i~~iD~~Gl~~~-~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g 180 (399)
.+.+.|. ++.++||||+... .+.-.......+..++.+|++++|+|++.+......
T Consensus 238 ~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l---------------------- 295 (426)
T PRK11058 238 RIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI---------------------- 295 (426)
T ss_pred EEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH----------------------
Confidence 9998775 8889999998542 111111122233456789999999998875322110
Q ss_pred hHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh--HHH
Q 015822 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VDK 258 (399)
Q Consensus 181 ~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~--~~~ 258 (399)
..+..++..+. ...+|+++|+||+|+..... ...
T Consensus 296 --------------------~~v~~iL~el~------------------------~~~~pvIiV~NKiDL~~~~~~~~~~ 331 (426)
T PRK11058 296 --------------------EAVNTVLEEID------------------------AHEIPTLLVMNKIDMLDDFEPRIDR 331 (426)
T ss_pred --------------------HHHHHHHHHhc------------------------cCCCCEEEEEEcccCCCchhHHHHH
Confidence 01112222211 01369999999999874321 111
Q ss_pred HH-cCCCEEEecchhccchHHHHHHHHHHhC
Q 015822 259 LA-RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 259 l~-~~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.. ..+.++++||++|.|+++|.+.+.+.+.
T Consensus 332 ~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 332 DEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred HhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 11 1233588999999999999999988763
No 166
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.1e-20 Score=175.44 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=111.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+...+ ...+++.+
T Consensus 20 ~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~~ 82 (255)
T PRK11231 20 DLSLSLPT--GKITALIGPNGCGKSTLLKCFARLLTP-----------QSGTVFLGDKPISMLSSRQL----ARRLALLP 82 (255)
T ss_pred eeeeEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCcEEEECCEEhHHCCHHHH----hhheEEec
Confidence 77888888 779999999999999999999998755 88999999987653332111 22345555
Q ss_pred hhccccCC---hhhhHHHHh----cC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS---SDIVLMVLD----AS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d----~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .|.+.+... .. ........+.+.++.+++ ..++.+..||+||+||+.++ +++
T Consensus 83 q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 162 (255)
T PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLL 162 (255)
T ss_pred ccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 54333322 222222110 00 112234467788888998 57889999999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHHh---hh-CCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILHEY---KI-HNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l---~~-~~~~v~vthd~~~ 225 (399)
||||++||......+++.+ .. ..++|++||+...
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~ 200 (255)
T PRK11231 163 DEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ 200 (255)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 9999999998655554444 33 3489999999764
No 167
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=3.9e-20 Score=171.15 Aligned_cols=153 Identities=17% Similarity=0.110 Sum_probs=109.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+ ....+++..
T Consensus 29 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~i~~~~-------~~~~i~~~~ 88 (214)
T PRK13543 29 PLDFHVDA--GEALLVQGDNGAGKTTLLRVLAGLLHV-----------ESGQIQIDGKTATRGD-------RSRFMAYLG 88 (214)
T ss_pred cceEEECC--CCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCEEccchh-------hhhceEEee
Confidence 77888888 779999999999999999999999765 8899999998764211 112344444
Q ss_pred hhccccCCh---hhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKSS---DIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|....+... +.+.+...... ....+.+.+.++.+++ ..++.+..||+||+||++++ +++||||++
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHG-RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcC-CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 443333322 22222211111 1123456778888888 57888999999999999998 999999999
Q ss_pred CCHHHHHHHHHHh---hh-CCcEEEEcCCCCH
Q 015822 198 VDEKLCYQILHEY---KI-HNAEVLFREDATV 225 (399)
Q Consensus 198 LD~~~v~~ll~~l---~~-~~~~v~vthd~~~ 225 (399)
||......+.+.+ .. ..+++++|||...
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (214)
T PRK13543 168 LDLEGITLVNRMISAHLRGGGAALVTTHGAYA 199 (214)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 9998655554444 33 3589999999764
No 168
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.3e-20 Score=173.88 Aligned_cols=165 Identities=17% Similarity=0.112 Sum_probs=111.4
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|..... | ..|..|.+.++|.++...+. . .......+++.
T Consensus 23 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~i~~~~~-~-~~~~~~~i~~v 92 (253)
T PRK14242 23 HDISLEFEQ--NQVTALIGPSGCGKSTFLRCLNRMNDLI---P---GARVEGEILLDGENIYDPHV-D-VVELRRRVGMV 92 (253)
T ss_pred cceeEEEeC--CCEEEEECCCCCCHHHHHHHHHhhcccC---C---CCCCceEEEECCEEcccccc-C-HHHHhhcEEEE
Confidence 377888888 7799999999999999999999985310 0 01368999999987642111 0 01112345666
Q ss_pred hhhccccCC--hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSKS--SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+.. .+.+.+..... ......+.+.+.++.+++ .+++++..||+||+||++++ ++
T Consensus 93 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 172 (253)
T PRK14242 93 FQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLL 172 (253)
T ss_pred ecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 665433332 23333322211 112234567778888887 25778899999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~ 225 (399)
+||||++||......+.+ .+....+++++|||...
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~ 210 (253)
T PRK14242 173 MDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQ 210 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH
Confidence 999999999986555444 44333489999999764
No 169
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.2e-20 Score=177.71 Aligned_cols=159 Identities=21% Similarity=0.168 Sum_probs=114.6
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. .....+++.
T Consensus 24 ~~vsl~i~~--Ge~~~i~G~nGaGKSTLl~~i~G~~~p-----------~~G~i~~~g~~i~~~~~~----~~~~~i~~~ 86 (279)
T PRK13635 24 KDVSFSVYE--GEWVAIVGHNGSGKSTLAKLLNGLLLP-----------EAGTITVGGMVLSEETVW----DVRRQVGMV 86 (279)
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHH----HHhhheEEE
Confidence 377888888 789999999999999999999999765 899999999987432211 122346666
Q ss_pred hhhcc-ccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIA-VSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~-~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|... .+.. .+.+.+.... .......+.+.+.|+.+|+ .+++.+..||+||+||++|+ +++||
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 166 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 66431 2222 3333222111 1222334567888999998 68889999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhhh--CCcEEEEcCCCCHH
Q 015822 194 PLTHVDEKLCYQILH---EYKI--HNAEVLFREDATVD 226 (399)
Q Consensus 194 pts~LD~~~v~~ll~---~l~~--~~~~v~vthd~~~~ 226 (399)
||++||......+++ .+.. ..+++++||+....
T Consensus 167 Pt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~ 204 (279)
T PRK13635 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA 204 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 999999986555544 4443 34899999997653
No 170
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.2e-20 Score=178.89 Aligned_cols=159 Identities=20% Similarity=0.197 Sum_probs=113.6
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+... ....+++.
T Consensus 26 ~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~~----~~~~i~~v 88 (271)
T PRK13632 26 KNVSFEINE--GEYVAILGHNGSGKSTISKILTGLLKP-----------QSGEIKIDGITISKENLKE----IRKKIGII 88 (271)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEecCcCCHHH----HhcceEEE
Confidence 377888887 779999999999999999999999765 8999999998874322211 12345555
Q ss_pred hhhcc-ccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIA-VSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~-~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|... .+.. .+.+.+.... .........+.+.++.+++ .+++.+..||+||+||++|+ +++||
T Consensus 89 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (271)
T PRK13632 89 FQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168 (271)
T ss_pred EeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 55431 1222 3333332211 2222234457888999999 67899999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hh-C-CcEEEEcCCCCHH
Q 015822 194 PLTHVDEKLCYQILHEY---KI-H-NAEVLFREDATVD 226 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~-~-~~~v~vthd~~~~ 226 (399)
||++||......+++.+ .. . .+++++||+....
T Consensus 169 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 169 STSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA 206 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH
Confidence 99999998655544444 33 2 4899999997653
No 171
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=2.7e-20 Score=171.32 Aligned_cols=153 Identities=17% Similarity=0.130 Sum_probs=108.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.. +. .....++..
T Consensus 20 ~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~---~~----~~~~~~~~~ 79 (207)
T PRK13539 20 GLSFTLAA--GEALVLTGPNGSGKTTLLRLIAGLLPP-----------AAGTIKLDGGDIDD---PD----VAEACHYLG 79 (207)
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEeCcc---hh----hHhhcEEec
Confidence 77888888 789999999999999999999998755 88999999987532 11 122334443
Q ss_pred hhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
+....+.. .+.+.+....... ..+.+.+.++.+|+ ..++++..||+||+||++++ +++||||++
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGG--EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCC--cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 32222222 2333222222111 12347788999998 56788899999999999988 999999999
Q ss_pred CCHHHHHHHHHHhh---h-CCcEEEEcCCCCHH
Q 015822 198 VDEKLCYQILHEYK---I-HNAEVLFREDATVD 226 (399)
Q Consensus 198 LD~~~v~~ll~~l~---~-~~~~v~vthd~~~~ 226 (399)
||......+++.+. . ..+++++||+....
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 190 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGL 190 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 99986555554443 2 34899999997643
No 172
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.5e-20 Score=165.22 Aligned_cols=166 Identities=17% Similarity=0.235 Sum_probs=122.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++|+++.+ |...+|+|||||||||||.+++..... ++|.+.++|.++.-.++..+.
T Consensus 19 ~isl~i~~--g~iTs~IGPNGAGKSTLLS~~sRL~~~-----------d~G~i~i~g~~~~~~~s~~LA----------- 74 (252)
T COG4604 19 DVSLDIPK--GGITSIIGPNGAGKSTLLSMMSRLLKK-----------DSGEITIDGLELTSTPSKELA----------- 74 (252)
T ss_pred cceeeecC--CceeEEECCCCccHHHHHHHHHHhccc-----------cCceEEEeeeecccCChHHHH-----------
Confidence 78899998 559999999999999999999998766 899999999998766544332
Q ss_pred hhccccCChhhh-------HHHHhc-------CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce-------
Q 015822 132 QVIAVSKSSDIV-------LMVLDA-------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (399)
Q Consensus 132 q~~~~~~~~d~i-------l~v~d~-------~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia------- 188 (399)
+.++.+++...+ -+|.-+ ....++...+.+.++.+++ ..+++..+|||||+||.-+|
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccC
Confidence 222222222211 112111 1134667788999999998 66788999999999999888
Q ss_pred --eeeccCCCCCCHHHHHHHHHHhh-----hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 189 --FNSTLPLTHVDEKLCYQILHEYK-----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~ll~~l~-----~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+++|||+++||.....++++.++ +..|+++|-||.+.... |...|+++-..-+
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~---------YsD~IVAlK~G~v 214 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASC---------YSDHIVALKNGKV 214 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHh---------hhhheeeecCCEE
Confidence 88999999999986555555443 45699999999987663 4456666655443
No 173
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=1.4e-20 Score=174.56 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=107.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.. .....+++.
T Consensus 21 ~~i~~~i~~--G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~ 83 (220)
T cd03245 21 DNVSLTIRA--GEKVAIIGRVGSGKSTLLKLLAGLYKP-----------TSGSVLLDGTDIRQLDPA----DLRRNIGYV 83 (220)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCeEEECCEEhHHCCHH----HHHhhEEEe
Confidence 377888888 779999999999999999999999765 789999999876533211 112345555
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--ccccc-----------ccccchhhHhhcCce---------
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR-----------PPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~-----------~~~LS~g~kqr~~ia--------- 188 (399)
+|....+. ..+...+.-... ......+.+.++.+++ .+++. +..||+||+||+.++
T Consensus 84 ~q~~~~~~-~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 84 PQDVTLFY-GTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred CCCCcccc-chHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 55543332 222222211111 1112345566677776 33333 469999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHH
Q 015822 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~ 227 (399)
+++||||++||......+.+.+. ...++|++||+....+
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 99999999999987665555554 2358999999986533
No 174
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.83 E-value=6.2e-20 Score=174.90 Aligned_cols=165 Identities=17% Similarity=0.148 Sum_probs=113.6
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCc-cccccccccCccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGR 129 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~-~Gl~~~~~~~~~~ 129 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+. .+..|.+.++|.++...+. +.-.......+++
T Consensus 21 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~p~--------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~ 90 (262)
T PRK09984 21 HAVDLNIHH--GEMVALLGPSGSGKSTLLRHLSGLITGD--------KSAGSHIELLGRTVQREGRLARDIRKSRANTGY 90 (262)
T ss_pred ecceEEEcC--CcEEEEECCCCCCHHHHHHHHhccCCCC--------CCCceEEEECCEecccccccchhHHHHHhheEE
Confidence 377888888 7799999999999999999999997551 0135999999987643210 0000111234556
Q ss_pred chhhccccCChhhhHHHHhc-------------CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce------
Q 015822 130 GRQVIAVSKSSDIVLMVLDA-------------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------ 188 (399)
Q Consensus 130 ~~q~~~~~~~~d~il~v~d~-------------~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia------ 188 (399)
.+|....+....+...+... .......+.+.+.++.+|+ .+++.+..||+||+||+.++
T Consensus 91 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 170 (262)
T PRK09984 91 IFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQ 170 (262)
T ss_pred EccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcC
Confidence 66654444433332222110 0012234567889999998 57889999999999999988
Q ss_pred ---eeeccCCCCCCHHHHHHHHH---Hhhh--CCcEEEEcCCCCH
Q 015822 189 ---FNSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATV 225 (399)
Q Consensus 189 ---li~DEpts~LD~~~v~~ll~---~l~~--~~~~v~vthd~~~ 225 (399)
+++||||++||......+.+ .+.. ..++|++|||...
T Consensus 171 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~ 215 (262)
T PRK09984 171 AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY 215 (262)
T ss_pred CCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999986555444 4432 3489999999875
No 175
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.1e-20 Score=173.29 Aligned_cols=181 Identities=16% Similarity=0.105 Sum_probs=119.7
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+.... |.+|.+.++|.++...+.+ ......++++.
T Consensus 24 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~------~~~G~i~~~g~~i~~~~~~--~~~~~~~i~~v 93 (254)
T PRK14273 24 NNINIKILK--NSITALIGPSGCGKSTFLRTLNRMNDLVEGI------KIEGNVIYEGKNIYSNNFD--ILELRRKIGMV 93 (254)
T ss_pred cceeeEEcC--CCEEEEECCCCCCHHHHHHHHhccccCCcCC------CCceEEEECCEeccccccc--HHHHhhceEEE
Confidence 378888888 7899999999999999999999997541110 2589999999876421110 01123446666
Q ss_pred hhhccccC--ChhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSK--SSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~--~~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+. -.+.+.+..... ......+.+.+.|+.+++ ..++.+..||+||+||++|+ ++
T Consensus 94 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (254)
T PRK14273 94 FQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVIL 173 (254)
T ss_pred eeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 66543332 133333222111 112224456777888776 35788999999999999998 99
Q ss_pred eccCCCCCCHHHHHHH---HHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 191 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 191 ~DEpts~LD~~~v~~l---l~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+||||++||......+ +..+....++|++||+.....- ....+++++...+
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~---------~~d~i~~l~~G~i 227 (254)
T PRK14273 174 MDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGR---------ISDRTAFFLNGCI 227 (254)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 9999999999855544 4444333589999999765321 1345666665443
No 176
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.7e-20 Score=176.64 Aligned_cols=172 Identities=17% Similarity=0.168 Sum_probs=119.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ++|.+.++|.++...+... ....+++.
T Consensus 21 ~~vsl~i~~--Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v 83 (277)
T PRK13652 21 NNINFIAPR--NSRIAVIGPNGAGKSTLFRHFNGILKP-----------TSGSVLIRGEPITKENIRE----VRKFVGLV 83 (277)
T ss_pred eEeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHH----HHhheEEE
Confidence 377888888 789999999999999999999998765 8999999998764322211 12334555
Q ss_pred hhhcc-ccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIA-VSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~-~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|... .+.. .+.+.+... ...+....+.+.+.++.+++ .+++.+..||+||+||++++ +++||
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE 163 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 55421 1111 233322111 12222334467888999998 67889999999999999998 99999
Q ss_pred CCCCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCHH-HHHHHHhhccccccEEEEEecCC
Q 015822 194 PLTHVDEKLCYQ---ILHEYKI--HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 194 pts~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~~-~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
||++||...... +++++.. ..+++++||+.... ++ ...+++++..-
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~----------~drv~~l~~G~ 215 (277)
T PRK13652 164 PTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEM----------ADYIYVMDKGR 215 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh----------CCEEEEEECCe
Confidence 999999885544 4555543 34899999997653 33 34566666543
No 177
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.83 E-value=2.9e-20 Score=172.60 Aligned_cols=162 Identities=22% Similarity=0.195 Sum_probs=114.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+.. -......++++.+
T Consensus 23 ~vs~~i~~--G~~~~I~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~-~~~~~~~~i~~~~ 88 (220)
T TIGR02982 23 DINLEINP--GEIVILTGPSGSGKTTLLTLIGGLRSV-----------QEGSLKVLGQELYGASEK-ELVQLRRNIGYIF 88 (220)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEhHhcCHh-HHHHHHhheEEEc
Confidence 77888887 789999999999999999999998765 899999999887532210 0001123456656
Q ss_pred hhccccCC---hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS---KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~---~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|....+.. .+.+.+..+.. ........+.++++.+|+ ..++.+..||+||+||+.++ +++|||
T Consensus 89 q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 89 QAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 65444432 23333322211 122234467888999998 57888999999999999988 999999
Q ss_pred CCCCCHHHHHHHH---HHhhh--CCcEEEEcCCCCHHH
Q 015822 195 LTHVDEKLCYQIL---HEYKI--HNAEVLFREDATVDD 227 (399)
Q Consensus 195 ts~LD~~~v~~ll---~~l~~--~~~~v~vthd~~~~~ 227 (399)
|++||......++ +.+.. ..++|++||+....+
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~ 206 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD 206 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 9999998655444 44432 359999999975433
No 178
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.2e-20 Score=192.17 Aligned_cols=160 Identities=21% Similarity=0.205 Sum_probs=114.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.. |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+.. ......+++.
T Consensus 22 ~~vs~~i~~--Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~---~~~~~~i~~v 85 (510)
T PRK09700 22 KSVNLTVYP--GEIHALLGENGAGKSTLMKVLSGIHEP-----------TKGTITINNINYNKLDHK---LAAQLGIGII 85 (510)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCcCC-----------CccEEEECCEECCCCCHH---HHHHCCeEEE
Confidence 377888887 789999999999999999999999755 889999999887533211 0112346666
Q ss_pred hhhccccCChhhhHHHHhc-------CC-----cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce--------
Q 015822 131 RQVIAVSKSSDIVLMVLDA-------SK-----SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~-------~~-----~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
+|....+....+...+... .. .....+.+.+.|+.+|+ ..++++.+||+||+||+.||
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 165 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165 (510)
T ss_pred eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 6654433332322222110 01 11234567888999998 57889999999999999998
Q ss_pred -eeeccCCCCCCHHHHHHH---HHHhhhC-CcEEEEcCCCCHH
Q 015822 189 -FNSTLPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDATVD 226 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~l---l~~l~~~-~~~v~vthd~~~~ 226 (399)
+++||||++||......+ ++.+... .++|++|||....
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~ 208 (510)
T PRK09700 166 VIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEI 208 (510)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999999999999865555 4444433 4899999997653
No 179
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.8e-20 Score=174.14 Aligned_cols=165 Identities=19% Similarity=0.147 Sum_probs=112.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+-. ..|..|.|.++|.++...+... ......+++.
T Consensus 21 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~--~~~~~~i~~~ 90 (253)
T PRK14267 21 KGVDLKIPQ--NGVFALMGPSGCGKSTLLRTFNRLLELNE------EARVEGEVRLFGRNIYSPDVDP--IEVRREVGMV 90 (253)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCccc------CCCCceEEEECCEEccccccCh--HHHhhceeEE
Confidence 377888888 78999999999999999999999875400 0135899999998874211100 0112345666
Q ss_pred hhhccccCCh---hhhHHHHhcC----CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------
Q 015822 131 RQVIAVSKSS---DIVLMVLDAS----KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 131 ~q~~~~~~~~---d~il~v~d~~----~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia--------- 188 (399)
+|....+... +.+.+..... ........+.+.++.+++ .+++++..||+||+||++++
T Consensus 91 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 170 (253)
T PRK14267 91 FQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKI 170 (253)
T ss_pred ecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 6654444332 3332221111 112223456778888876 25778999999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCH
Q 015822 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~ 225 (399)
+++||||++||......+.+.+ ....++|++||+...
T Consensus 171 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 210 (253)
T PRK14267 171 LLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ 210 (253)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 9999999999998655554444 333589999999764
No 180
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.2e-20 Score=191.26 Aligned_cols=162 Identities=16% Similarity=0.164 Sum_probs=115.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.. |++++|+|+||||||||+++|+|...+ +|.+|.+.++|.++...... ...+..+++.
T Consensus 22 ~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------~~~~G~i~~~g~~~~~~~~~---~~~~~~i~~v 87 (506)
T PRK13549 22 DNVSLKVRA--GEIVSLCGENGAGKSTLMKVLSGVYPH---------GTYEGEIIFEGEELQASNIR---DTERAGIAII 87 (506)
T ss_pred cceeEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCHH---HHHHCCeEEE
Confidence 378888888 789999999999999999999998643 13689999999887432211 1112446666
Q ss_pred hhhccccCC---hhhhHHHHhcC-----CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 131 RQVIAVSKS---SDIVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~-----~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
+|....+.. .+.+.+..... ......+.+.++|+.+++ ..++++..||+||+||++|| +++
T Consensus 88 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 167 (506)
T PRK13549 88 HQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLIL 167 (506)
T ss_pred EeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 665444433 23332221111 112234567888999998 67889999999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCHH
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~~ 226 (399)
||||++||+.....+ +..+.. ..++|++|||+...
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 168 DEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 999999999855544 444433 34899999997653
No 181
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.1e-20 Score=176.29 Aligned_cols=175 Identities=22% Similarity=0.191 Sum_probs=118.9
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.....+ . ......+++.
T Consensus 19 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v 83 (275)
T PRK13639 19 KGINFKAEK--GEMVALLGPNGAGKSTLFLHFNGILKP-----------TSGEVLIKGEPIKYDKKS-L-LEVRKTVGIV 83 (275)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEECccccch-H-HHHHhheEEE
Confidence 377888888 789999999999999999999998765 899999999887421110 0 0112345555
Q ss_pred hhhcc--ccC--ChhhhHHHH-h-cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIA--VSK--SSDIVLMVL-D-ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~--~~~--~~d~il~v~-d-~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|... .+. -.+.+.+.. + ........+.+.++++.+++ ..++++..||+||+||++++ +++||
T Consensus 84 ~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 163 (275)
T PRK13639 84 FQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE 163 (275)
T ss_pred eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 55431 111 123332211 1 11122234567788999998 67888999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 194 PLTHVDEKLCYQILHEY---KI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
||++||......+++.+ .. ..+++++|||..... .+...++++++.-
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~---------~~~d~i~~l~~G~ 214 (275)
T PRK13639 164 PTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVP---------VYADKVYVMSDGK 214 (275)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH---------HhCCEEEEEECCE
Confidence 99999998655554444 33 348999999976432 1235566666543
No 182
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.83 E-value=4.1e-20 Score=175.76 Aligned_cols=164 Identities=18% Similarity=0.124 Sum_probs=111.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe-----ecccCcccccccccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-----IQLLDLPGIIEGASE 125 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-----i~~iD~~Gl~~~~~~ 125 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.+ +.-.+...+......
T Consensus 23 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~ 89 (258)
T PRK11701 23 RDVSFDLYP--GEVLGIVGESGSGKTTLLNALSARLAP-----------DAGEVHYRMRDGQLRDLYALSEAERRRLLRT 89 (258)
T ss_pred eeeeEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCccccccccccCCHHHHHHHhhc
Confidence 377888888 789999999999999999999998765 89999999986 432221111111123
Q ss_pred Ccccchhhcc--ccCC---hhhhHHHHhc---CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce------
Q 015822 126 GKGRGRQVIA--VSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------ 188 (399)
Q Consensus 126 ~~~~~~q~~~--~~~~---~d~il~v~d~---~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------ 188 (399)
.+++.+|... .... .+.+..-+.. .........+.++++.+++ .+++.+..||+||+||+++|
T Consensus 90 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~ 169 (258)
T PRK11701 90 EWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTH 169 (258)
T ss_pred ceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcC
Confidence 4555555432 1111 1122211111 1111224456788889988 35788999999999999998
Q ss_pred ---eeeccCCCCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCHHH
Q 015822 189 ---FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATVDD 227 (399)
Q Consensus 189 ---li~DEpts~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~~~ 227 (399)
+++||||++||......+++.+ .. ..++|++||+.....
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216 (258)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 9999999999998655554444 33 348999999976543
No 183
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=5e-20 Score=191.54 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=114.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.|.++|.++...+... ....++++.+
T Consensus 29 ~vsl~i~~--Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~v~ 92 (510)
T PRK15439 29 GIDFTLHA--GEVHALLGGNGAGKSTLMKIIAGIVPP-----------DSGTLEIGGNPCARLTPAK---AHQLGIYLVP 92 (510)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCHHH---HHhCCEEEEe
Confidence 78888888 779999999999999999999999765 8999999998775332111 1123456666
Q ss_pred hhccccCChhhhHHHHhc-CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCC
Q 015822 132 QVIAVSKSSDIVLMVLDA-SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~-~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD 199 (399)
|....+....+...+... .......+.+.+.|+.+++ ..++++..||+||+||+.|| +++||||++||
T Consensus 93 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD 172 (510)
T PRK15439 93 QEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLT 172 (510)
T ss_pred ccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 654444433332222111 1112234567888999998 67889999999999999998 99999999999
Q ss_pred HHHHHHH---HHHhhhC-CcEEEEcCCCCH
Q 015822 200 EKLCYQI---LHEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 200 ~~~v~~l---l~~l~~~-~~~v~vthd~~~ 225 (399)
+.....+ ++.+... .++|++|||...
T Consensus 173 ~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 202 (510)
T PRK15439 173 PAETERLFSRIRELLAQGVGIVFISHKLPE 202 (510)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9855544 4444433 489999999765
No 184
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.9e-20 Score=179.86 Aligned_cols=177 Identities=18% Similarity=0.144 Sum_probs=121.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeeccc-------Cc------c
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-------DL------P 117 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~i-------D~------~ 117 (399)
.+++|++.+ |+++||+|+||||||||+++|+|...+ .+|.|.++|.++.-. .. .
T Consensus 43 ~~vsl~i~~--Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-----------~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~ 109 (320)
T PRK13631 43 NNISYTFEK--NKIYFIIGNSGSGKSTLVTHFNGLIKS-----------KYGTIQVGDIYIGDKKNNHELITNPYSKKIK 109 (320)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCEEcccccccccccccccccccc
Confidence 377888888 789999999999999999999999765 899999999876321 00 0
Q ss_pred ccccccccCcccchhhc--cccCC--hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce
Q 015822 118 GIIEGASEGKGRGRQVI--AVSKS--SDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS 188 (399)
Q Consensus 118 Gl~~~~~~~~~~~~q~~--~~~~~--~d~il~v~d--~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia 188 (399)
.. ...+..+++.+|.. ..+.. .+.+.+... .........++.+.++.+|+ ..++.+..||+||+||++||
T Consensus 110 ~~-~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiA 188 (320)
T PRK13631 110 NF-KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIA 188 (320)
T ss_pred hH-HHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHH
Confidence 00 11234466666653 12221 222222111 11222334567788999998 36888999999999999998
Q ss_pred ---------eeeccCCCCCCHHHHHHHHHHh---hh-CCcEEEEcCCCCHH-HHHHHHhhccccccEEEEEecCCCC
Q 015822 189 ---------FNSTLPLTHVDEKLCYQILHEY---KI-HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 ---------li~DEpts~LD~~~v~~ll~~l---~~-~~~~v~vthd~~~~-~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+++||||++||......+++.+ .. ..|+|++|||.... .+ ...+++++..-+.
T Consensus 189 raL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~----------adri~vl~~G~i~ 255 (320)
T PRK13631 189 GILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEV----------ADEVIVMDKGKIL 255 (320)
T ss_pred HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh----------CCEEEEEECCEEE
Confidence 9999999999998665555544 33 34899999997642 32 3567777765543
No 185
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=2.9e-20 Score=169.47 Aligned_cols=152 Identities=12% Similarity=0.038 Sum_probs=106.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+ ....++..
T Consensus 18 ~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~--------~~~~~~~~ 76 (195)
T PRK13541 18 DLSITFLP--SAITYIKGANGCGKSSLLRMIAGIMQP-----------SSGNIYYKNCNINNIA--------KPYCTYIG 76 (195)
T ss_pred EEEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCcccChhh--------hhhEEecc
Confidence 36777777 789999999999999999999999765 8999999998764321 01123333
Q ss_pred hhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
+....+.. .+.+.+...... ..+.+.+.++.+++ ..++.+..||+||+||++++ +++||||++
T Consensus 77 ~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~ 153 (195)
T PRK13541 77 HNLGLKLEMTVFENLKFWSEIYN---SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETN 153 (195)
T ss_pred CCcCCCccCCHHHHHHHHHHhcc---cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 32222222 233322111111 23456777888888 57888999999999999988 999999999
Q ss_pred CCHHHHHHHHHHhh----hCCcEEEEcCCCCHHH
Q 015822 198 VDEKLCYQILHEYK----IHNAEVLFREDATVDD 227 (399)
Q Consensus 198 LD~~~v~~ll~~l~----~~~~~v~vthd~~~~~ 227 (399)
||......+.+.+. ...+++++||+.....
T Consensus 154 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 154 LSKENRDLLNNLIVMKANSGGIVLLSSHLESSIK 187 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccc
Confidence 99986555554443 2348999999976544
No 186
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.82 E-value=9.6e-20 Score=173.30 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=117.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+... ....+++.+
T Consensus 20 ~is~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~ 82 (258)
T PRK13548 20 DVSLTLRP--GEVVAILGPNGAGKSTLLRALSGELSP-----------DSGEVRLNGRPLADWSPAE----LARRRAVLP 82 (258)
T ss_pred eeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcccCCHHH----hhhheEEEc
Confidence 77888888 779999999999999999999998765 8999999998764332111 122345555
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------------e
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------F 189 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------------l 189 (399)
|....... .|.+.+..... ........+.+.|+.+++ ..++.+..||+||+||++|+ +
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 54433222 23332211111 112234567788999998 57889999999999998765 5
Q ss_pred eeccCCCCCCHHHHH---HHHHHhh-h-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 190 NSTLPLTHVDEKLCY---QILHEYK-I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 190 i~DEpts~LD~~~v~---~ll~~l~-~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
++||||++||..... +++..+. . ..++|++|||.....- ....+++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~---------~~d~i~~l~~G 217 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAAR---------YADRIVLLHQG 217 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH---------hcCEEEEEECC
Confidence 789999999998554 4455444 2 3489999999764321 23556666654
No 187
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.82 E-value=1e-19 Score=173.94 Aligned_cols=171 Identities=19% Similarity=0.182 Sum_probs=116.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.|.++|.++.... +. .....+++.+
T Consensus 31 ~vsl~i~~--Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~~---~~~~~i~~v~ 93 (267)
T PRK15112 31 PLSFTLRE--GQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGELLIDDHPLHFGD-YS---YRSQRIRMIF 93 (267)
T ss_pred eeeEEecC--CCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCc-hh---hHhccEEEEe
Confidence 77888888 779999999999999999999999765 8999999998875311 11 1123455555
Q ss_pred hhcc--ccCC---hhhhHHHHhc---CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIA--VSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~--~~~~---~d~il~v~d~---~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|... .... .+.+.+.... .......+.+.+.|+.+|+ ..++.+..||+||+||++++ +++
T Consensus 94 q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 173 (267)
T PRK15112 94 QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIA 173 (267)
T ss_pred cCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEE
Confidence 5432 1121 1222221111 1122234567888999998 35677899999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
||||++||......+ +..+.. ..++|++||+.....- ....+++++..
T Consensus 174 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~---------~~d~i~~l~~G 226 (267)
T PRK15112 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKH---------ISDQVLVMHQG 226 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH---------hcCEEEEEECC
Confidence 999999999865544 444432 3489999999754321 13456666654
No 188
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.3e-20 Score=173.28 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=110.3
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. .....+++.
T Consensus 20 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~----~~~~~i~~~ 82 (241)
T PRK14250 20 KDISVKFEG--GAIYTIVGPSGAGKSTLIKLINRLIDP-----------TEGSILIDGVDIKTIDVI----DLRRKIGMV 82 (241)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcChH----HhhhcEEEE
Confidence 377888888 779999999999999999999998755 899999999876433211 112345555
Q ss_pred hhhccccCChhhhHHHHhc--CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCCC
Q 015822 131 RQVIAVSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~--~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpts 196 (399)
+|....+. ..+...+... ... .....+.+.++.+++ ..++.+..||+||+||++++ +++||||+
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 160 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPMLKG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160 (241)
T ss_pred ecCchhch-hhHHHHHhcchhhcC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 55543332 1222222111 111 123456788888888 35788999999999999998 99999999
Q ss_pred CCCHHHHHHHH---HHhhh--CCcEEEEcCCCCH
Q 015822 197 HVDEKLCYQIL---HEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 197 ~LD~~~v~~ll---~~l~~--~~~~v~vthd~~~ 225 (399)
+||......+. +.+.. ..++|++|||...
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 99998655544 44432 3489999999764
No 189
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=9.9e-20 Score=174.25 Aligned_cols=173 Identities=18% Similarity=0.166 Sum_probs=119.7
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+... ....+++.
T Consensus 26 ~~isl~i~~--Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v 88 (269)
T PRK13648 26 KDVSFNIPK--GQWTSIVGHNGSGKSTIAKLMIGIEKV-----------KSGEIFYNNQAITDDNFEK----LRKHIGIV 88 (269)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHH----HHhheeEE
Confidence 377888888 779999999999999999999999765 8999999998774332211 12345555
Q ss_pred hhhcc-ccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIA-VSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~-~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|... .+.. .+.+.+.... .......+.+.+.++.+++ ..++.+..||+||+||++++ +++||
T Consensus 89 ~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (269)
T PRK13648 89 FQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE 168 (269)
T ss_pred EeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 55432 2222 2222222211 1122234467788899998 67888999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 194 PLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 194 pts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||++||......+ +..+.. ..+++++||+...... ...+++++..-+
T Consensus 169 Pt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~----------~d~i~~l~~G~i 220 (269)
T PRK13648 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME----------ADHVIVMNKGTV 220 (269)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc----------CCEEEEEECCEE
Confidence 9999999865544 444432 3489999999764321 355677766443
No 190
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=8.7e-20 Score=175.66 Aligned_cols=172 Identities=15% Similarity=0.083 Sum_probs=119.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.|.++|.++.-... .......+++.+
T Consensus 28 ~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~~~~~---~~~~~~~i~~v~ 91 (280)
T PRK13633 28 DVNLEVKK--GEFLVILGRNGSGKSTIAKHMNALLIP-----------SEGKVYVDGLDTSDEEN---LWDIRNKAGMVF 91 (280)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccccc---HHHHhhheEEEe
Confidence 77888888 789999999999999999999999765 89999999987642110 011223456655
Q ss_pred hhcc--ccC--ChhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIA--VSK--SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~--~~~--~~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|... .+. -.+.+.+.... .........+.++++.+|+ ..++.+..||+||+||++|+ +++|||
T Consensus 92 q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 171 (280)
T PRK13633 92 QNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEP 171 (280)
T ss_pred cChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5431 111 12333222111 1222334567888999999 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHHH---HHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 195 LTHVDEKLCYQIL---HEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 195 ts~LD~~~v~~ll---~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
|++||......++ ..+.. ..+++++||+...... ...++++++.-
T Consensus 172 t~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~----------~d~v~~l~~G~ 221 (280)
T PRK13633 172 TAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE----------ADRIIVMDSGK 221 (280)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc----------CCEEEEEECCE
Confidence 9999998655544 44432 3489999999875431 35566776543
No 191
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.8e-20 Score=195.83 Aligned_cols=176 Identities=18% Similarity=0.130 Sum_probs=121.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|+|.+ |+++||+|+||||||||+++|+|...+ ..|.|.++|.++.-.+...+ ......+++.+
T Consensus 342 ~vs~~i~~--Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~-~~~~~~i~~v~ 407 (623)
T PRK10261 342 KVSFDLWP--GETLSLVGESGSGKSTTGRALLRLVES-----------QGGEIIFNGQRIDTLSPGKL-QALRRDIQFIF 407 (623)
T ss_pred eeEeEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCcEEEECCEECCcCCHHHH-HHhcCCeEEEe
Confidence 67787877 789999999999999999999999765 88999999988753321111 11234567777
Q ss_pred hhc--cccCC---hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eee
Q 015822 132 QVI--AVSKS---SDIVLMVLDAS---KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~--~~~~~---~d~il~v~d~~---~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|.. ..... .+.+....... ......+.+.++|+.+|+ ..++++.+|||||+||++|| |++
T Consensus 408 Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llll 487 (623)
T PRK10261 408 QDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIA 487 (623)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 753 23333 22232222111 122334568889999998 36889999999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||||++||......+ ++.+.. ..++|++|||.....- ....++++...-+
T Consensus 488 DEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~---------~~dri~vl~~G~i 542 (623)
T PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVER---------ISHRVAVMYLGQI 542 (623)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 999999999855544 444442 3489999999765331 2355666665433
No 192
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1e-19 Score=161.03 Aligned_cols=154 Identities=23% Similarity=0.251 Sum_probs=118.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++|+++.. |+.|+++||+|||||||||.++|...| ..|.+.++|.+|+- || ...|.++
T Consensus 23 ~vsL~ia~--ge~vv~lGpSGcGKTTLLnl~AGf~~P-----------~~G~i~l~~r~i~g---Pg------aergvVF 80 (259)
T COG4525 23 DVSLTIAS--GELVVVLGPSGCGKTTLLNLIAGFVTP-----------SRGSIQLNGRRIEG---PG------AERGVVF 80 (259)
T ss_pred ccceeecC--CCEEEEEcCCCccHHHHHHHHhcCcCc-----------ccceEEECCEeccC---CC------ccceeEe
Confidence 77888888 789999999999999999999999765 89999999999852 32 2235567
Q ss_pred hhccccCChhhhHHH---Hh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMV---LD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v---~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|.-..++-.+++-.+ +. +-.+....+.+.+.|..+|+ .-++++-+|||||+||++|| +++|||+
T Consensus 81 Q~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf 160 (259)
T COG4525 81 QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF 160 (259)
T ss_pred ccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence 776666665555443 22 23445556677888999998 56788999999999999998 9999999
Q ss_pred CCCCHH---HHHHHHHHh-hh-CCcEEEEcCCCCHHH
Q 015822 196 THVDEK---LCYQILHEY-KI-HNAEVLFREDATVDD 227 (399)
Q Consensus 196 s~LD~~---~v~~ll~~l-~~-~~~~v~vthd~~~~~ 227 (399)
++||.- .+.++|-.+ +. ...+++||||+...-
T Consensus 161 gAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAl 197 (259)
T COG4525 161 GALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL 197 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence 999964 455554444 33 347999999976544
No 193
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.9e-20 Score=164.49 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=126.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|+++. |+.+||+|+|||||||+|+.|.+...| ++|.+.++|.+.+- |..+ .++.+|..+
T Consensus 20 dVSF~ae~--Gei~GlLG~NGAGKTT~LRmiatlL~P-----------~~G~v~idg~d~~~-~p~~----vrr~IGVl~ 81 (245)
T COG4555 20 DVSFEAEE--GEITGLLGENGAGKTTLLRMIATLLIP-----------DSGKVTIDGVDTVR-DPSF----VRRKIGVLF 81 (245)
T ss_pred heeEEecc--ceEEEEEcCCCCCchhHHHHHHHhccC-----------CCceEEEeeccccc-ChHH----Hhhhcceec
Confidence 78888888 789999999999999999999999765 99999999976542 2111 223334333
Q ss_pred hhcccc---CChhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVS---KSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~---~~~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
.....+ ..-.++.++-... ...+...++.++.+.+++ .+++++..+|-|+||+++|| +++||||
T Consensus 82 ~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~ 161 (245)
T COG4555 82 GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT 161 (245)
T ss_pred CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence 211111 2233444443222 233345567778888888 78999999999999999999 9999999
Q ss_pred CCCCHHH---HHHHHHHhhhCC-cEEEEcCCCCHHH-HHHHHhhccccccEEEEEecCCCCChhhHHH
Q 015822 196 THVDEKL---CYQILHEYKIHN-AEVLFREDATVDD-LIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (399)
Q Consensus 196 s~LD~~~---v~~ll~~l~~~~-~~v~vthd~~~~~-~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~ 258 (399)
||||.-. +.+++.+++.++ ++++.||.+...+ +| +.++++.|..++-....+.
T Consensus 162 sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealC----------Drvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 162 SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALC----------DRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhh----------heEEEEecCcEEEcCCHHH
Confidence 9999875 455555555444 9999999976544 44 5678888877653333333
No 194
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=9.4e-20 Score=175.68 Aligned_cols=175 Identities=22% Similarity=0.205 Sum_probs=120.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++..-+ ... ......+++.+
T Consensus 24 ~vs~~i~~--Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-----------~~G~i~i~g~~~~~~~-~~~-~~~~~~ig~v~ 88 (283)
T PRK13636 24 GININIKK--GEVTAILGGNGAGKSTLFQNLNGILKP-----------SSGRILFDGKPIDYSR-KGL-MKLRESVGMVF 88 (283)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CccEEEECCEECCCCc-chH-HHHHhhEEEEe
Confidence 77888888 789999999999999999999999765 8999999998874211 100 11123456655
Q ss_pred hhcc-ccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIA-VSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~-~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|... .+.. .+.+.+.... .......+.+.+.++.+|+ ..++++..||+||+||++|+ +++|||
T Consensus 89 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEP 168 (283)
T PRK13636 89 QDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168 (283)
T ss_pred cCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5431 1111 2323221111 1222334567888999999 67899999999999999998 999999
Q ss_pred CCCCCHHHHH---HHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 195 LTHVDEKLCY---QILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 195 ts~LD~~~v~---~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
|++||..... ++++.+.. ..+++++||+.....- +...++++++.-+
T Consensus 169 t~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~---------~~dri~~l~~G~i 220 (283)
T PRK13636 169 TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPL---------YCDNVFVMKEGRV 220 (283)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH---------hCCEEEEEECCEE
Confidence 9999998655 44555543 3499999999875431 2345666665433
No 195
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=172.90 Aligned_cols=164 Identities=17% Similarity=0.156 Sum_probs=111.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+. |+ .|.+|.|.++|.++...+.. . ......+++.+
T Consensus 22 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~laGl~~~~---~~---~~~~G~I~~~g~~~~~~~~~-~-~~~~~~i~~~~ 91 (258)
T PRK14241 22 DVNLNIEP--RSVTAFIGPSGCGKSTVLRTLNRMHEVI---PG---ARVEGEVLLDGEDLYGPGVD-P-VAVRRTIGMVF 91 (258)
T ss_pred eeeEEEcC--CcEEEEECCCCCCHHHHHHHHhccCCcc---cC---CCcceEEEECCEeccccccC-h-HHHhcceEEEc
Confidence 67888887 7899999999999999999999986430 00 13689999999876421110 0 11223456666
Q ss_pred hhccccCC---hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 132 QVIAVSKS---SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|....+.. .+.+.+..... ......+.+.+.|+.+++ ..++.+..||+||+||++++ ++
T Consensus 92 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 171 (258)
T PRK14241 92 QRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLL 171 (258)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 65444433 23332222111 112223456777888876 35678899999999999998 99
Q ss_pred eccCCCCCCHHHHH---HHHHHhhhCCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~v~---~ll~~l~~~~~~v~vthd~~~ 225 (399)
+||||++||..... +++.++....++|++||+...
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~ 209 (258)
T PRK14241 172 MDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ 209 (258)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999999988544 444444434589999999764
No 196
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.9e-20 Score=189.71 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=114.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.|.++|.++...+.. ...+..+++.+
T Consensus 22 ~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~---~~~~~~i~~v~ 85 (501)
T PRK11288 22 DISFDCRA--GQVHALMGENGAGKSTLLKILSGNYQP-----------DAGSILIDGQEMRFASTT---AALAAGVAIIY 85 (501)
T ss_pred eeeEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHH---HHHhCCEEEEE
Confidence 77888888 779999999999999999999998765 899999999887532211 11234566666
Q ss_pred hhccccCChhhhHHHHhc--------CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeec
Q 015822 132 QVIAVSKSSDIVLMVLDA--------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~--------~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
|....+....+.-.+... .......+.+.+.|+.+|+ ..++++..||+||+||++|| +++|
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 165 (501)
T PRK11288 86 QELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD 165 (501)
T ss_pred echhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 654444433322222111 1122234567889999998 56888999999999999998 9999
Q ss_pred cCCCCCCHHHHHHHHH---HhhhC-CcEEEEcCCCCHH
Q 015822 193 LPLTHVDEKLCYQILH---EYKIH-NAEVLFREDATVD 226 (399)
Q Consensus 193 Epts~LD~~~v~~ll~---~l~~~-~~~v~vthd~~~~ 226 (399)
|||++||......+++ .+... .++|++|||....
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~ 203 (501)
T PRK11288 166 EPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEI 203 (501)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999999986555554 44333 4899999997643
No 197
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.8e-20 Score=189.75 Aligned_cols=158 Identities=14% Similarity=0.141 Sum_probs=110.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.|.++|.++.-.. + ......++++.+
T Consensus 281 ~isl~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~~~~~~-~--~~~~~~~i~~v~ 344 (510)
T PRK09700 281 DISFSVCR--GEILGFAGLVGSGRTELMNCLFGVDKR-----------AGGEIRLNGKDISPRS-P--LDAVKKGMAYIT 344 (510)
T ss_pred ceeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCEECCCCC-H--HHHHHCCcEEcc
Confidence 77888887 789999999999999999999999765 8999999998763211 0 011123456666
Q ss_pred hhc---cccCChhhhHHHHhc--------------CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---
Q 015822 132 QVI---AVSKSSDIVLMVLDA--------------SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS--- 188 (399)
Q Consensus 132 q~~---~~~~~~d~il~v~d~--------------~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia--- 188 (399)
|.. ..+.+..+...+.-. .........+.++|+.+++ ..++++..||+||+||+.||
T Consensus 345 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral 424 (510)
T PRK09700 345 ESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWL 424 (510)
T ss_pred CccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHH
Confidence 642 223322222111100 0112223457788999998 36888999999999999998
Q ss_pred ------eeeccCCCCCCHHHHHHHHHH---hhh-CCcEEEEcCCCCH
Q 015822 189 ------FNSTLPLTHVDEKLCYQILHE---YKI-HNAEVLFREDATV 225 (399)
Q Consensus 189 ------li~DEpts~LD~~~v~~ll~~---l~~-~~~~v~vthd~~~ 225 (399)
+++||||++||......+++. +.. ..++|++|||...
T Consensus 425 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~ 471 (510)
T PRK09700 425 CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE 471 (510)
T ss_pred hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 999999999999865554444 433 3489999999754
No 198
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.5e-20 Score=189.42 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=112.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+.. ......+++.+
T Consensus 16 ~vs~~i~~--Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~v~ 79 (491)
T PRK10982 16 NVNLKVRP--HSIHALMGENGAGKSTLLKCLFGIYQK-----------DSGSILFQGKEIDFKSSK---EALENGISMVH 79 (491)
T ss_pred eeeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCEECCCCCHH---HHHhCCEEEEe
Confidence 77888888 779999999999999999999998765 899999999887432211 11123456666
Q ss_pred hhccccCCh---hhhHHHHhc-C----CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeec
Q 015822 132 QVIAVSKSS---DIVLMVLDA-S----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~-~----~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
|....+... +.+.+.... . ......+.+.+.|+.+++ ..++++..||+||+||+.+| +++|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 654333332 222221110 0 112234467888999998 56888999999999999998 9999
Q ss_pred cCCCCCCHHHHHHH---HHHhhhC-CcEEEEcCCCCH
Q 015822 193 LPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 193 Epts~LD~~~v~~l---l~~l~~~-~~~v~vthd~~~ 225 (399)
|||++||......+ +..+... .++|++|||...
T Consensus 160 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~ 196 (491)
T PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE 196 (491)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 99999999865555 4444433 489999999764
No 199
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.82 E-value=6.5e-20 Score=171.31 Aligned_cols=158 Identities=22% Similarity=0.203 Sum_probs=110.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+..- .....+++.
T Consensus 17 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~~ 80 (230)
T TIGR03410 17 RGVSLEVPK--GEVTCVLGRNGVGKTTLLKTLMGLLPV-----------KSGSIRLDGEDITKLPPHE---RARAGIAYV 80 (230)
T ss_pred cceeeEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHHH---HHHhCeEEe
Confidence 377888888 779999999999999999999999765 8999999998775433211 112345666
Q ss_pred hhhccccCChhh---hHHHHhcCCcHHHHHHHHHHHHHcC-C--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 131 RQVIAVSKSSDI---VLMVLDASKSEGHRQILTKELEAVG-L--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 131 ~q~~~~~~~~d~---il~v~d~~~~~~~~~~i~~~L~~~g-i--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
+|....+....+ +.+....... ...+...+.++.++ + ..++++..||+||+||++++ +++||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPR-RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCc-chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 665444443232 2222211111 11233455666665 3 56888999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~ 225 (399)
++||......+ +.++.. ..++|++||+...
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF 194 (230)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 99999855544 444443 3489999999754
No 200
>PLN03073 ABC transporter F family; Provisional
Probab=99.82 E-value=2.3e-19 Score=192.27 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=103.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.. |++++|+|+|||||||||++|+|...| ..|.+.+++.. .+++.+
T Consensus 527 ~vsl~i~~--Ge~i~LvG~NGsGKSTLLk~L~Gll~p-----------~~G~I~~~~~~---------------~igyv~ 578 (718)
T PLN03073 527 NLNFGIDL--DSRIAMVGPNGIGKSTILKLISGELQP-----------SSGTVFRSAKV---------------RMAVFS 578 (718)
T ss_pred ccEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCceEEECCce---------------eEEEEe
Confidence 56666766 789999999999999999999998765 78998875421 122222
Q ss_pred hhc-cccCChhh-hHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVI-AVSKSSDI-VLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~-~~~~~~d~-il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|.. ..+...+. ++........ ...+.+...|+.+|+ ..++++..||+||+||++|+ |++||||++
T Consensus 579 Q~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~ 657 (718)
T PLN03073 579 QHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNH 657 (718)
T ss_pred ccccccCCcchhHHHHHHHhcCC-CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 321 00111111 1111111111 123467889999998 35788999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhh-hCCcEEEEcCCCCHH
Q 015822 198 VDEKLCYQILHEYK-IHNAEVLFREDATVD 226 (399)
Q Consensus 198 LD~~~v~~ll~~l~-~~~~~v~vthd~~~~ 226 (399)
||......+++.+. ..+++|++|||....
T Consensus 658 LD~~s~~~l~~~L~~~~gtvIivSHd~~~i 687 (718)
T PLN03073 658 LDLDAVEALIQGLVLFQGGVLMVSHDEHLI 687 (718)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 99998888887776 457999999997653
No 201
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.82 E-value=7.5e-20 Score=170.13 Aligned_cols=152 Identities=18% Similarity=0.151 Sum_probs=108.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||+|||||+++|+|...+ .+|.+.++|.++...+ ...+++.+
T Consensus 18 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~~~~~~~--------~~~~~~~~ 76 (223)
T TIGR03740 18 NISLTVPK--NSVYGLLGPNGAGKSTLLKMITGILRP-----------TSGEIIFDGHPWTRKD--------LHKIGSLI 76 (223)
T ss_pred eeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeccccc--------cccEEEEc
Confidence 67888887 789999999999999999999998765 8999999998753211 12344444
Q ss_pred hhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|....+.. .+.+.+....... ....+.+.++.+|+ ..++.+..||+||+||+.++ +++||||++
T Consensus 77 q~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~ 154 (223)
T TIGR03740 77 ESPPLYENLTARENLKVHTTLLGL--PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNG 154 (223)
T ss_pred CCCCccccCCHHHHHHHHHHHcCC--CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 44333332 2333222211111 13457788899998 57888999999999999988 999999999
Q ss_pred CCHHHHHHH---HHHhhh-CCcEEEEcCCCCHH
Q 015822 198 VDEKLCYQI---LHEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 198 LD~~~v~~l---l~~l~~-~~~~v~vthd~~~~ 226 (399)
||......+ +..+.. ..+++++|||....
T Consensus 155 LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~ 187 (223)
T TIGR03740 155 LDPIGIQELRELIRSFPEQGITVILSSHILSEV 187 (223)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 999865544 444443 34899999997653
No 202
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.82 E-value=1.8e-19 Score=169.15 Aligned_cols=157 Identities=17% Similarity=0.095 Sum_probs=108.9
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+|||||||||++|+|...+ .+|.+.++|.++... + ......+++.
T Consensus 38 ~~vs~~i~~--Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~--~---~~~~~~i~~~ 99 (236)
T cd03267 38 KGISFTIEK--GEIVGFIGPNGAGKTTTLKILSGLLQP-----------TSGEVRVAGLVPWKR--R---KKFLRRIGVV 99 (236)
T ss_pred eceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccc--c---hhhcccEEEE
Confidence 378888888 779999999999999999999998765 899999999764311 1 0112233443
Q ss_pred h-hhccccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 R-QVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~-q~~~~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
. +....+.. .+.+.+... ........+.+...++.+|+ ..++++..||+||+||+.++ +++||
T Consensus 100 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 100 FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred cCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3 22112222 233322222 12222334456778888888 56888999999999999988 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCH
Q 015822 194 PLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV 225 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~ 225 (399)
||++||......+.+.+ .. ..+++++||+...
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 216 (236)
T cd03267 180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKD 216 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 99999998655555444 32 3489999999764
No 203
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.4e-20 Score=193.97 Aligned_cols=178 Identities=14% Similarity=0.172 Sum_probs=122.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeec-----ccCccc-----ccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ-----LLDLPG-----IIE 121 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~-----~iD~~G-----l~~ 121 (399)
+++|++.. |+++||+|+||||||||+++|+|...+ ..|.+.++|..+. .++... +..
T Consensus 34 ~is~~v~~--Ge~~~lvG~nGsGKSTLl~~l~Gll~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 100 (623)
T PRK10261 34 NLSFSLQR--GETLAIVGESGSGKSVTALALMRLLEQ-----------AGGLVQCDKMLLRRRSRQVIELSEQSAAQMRH 100 (623)
T ss_pred eeEEEECC--CCEEEEECCCCChHHHHHHHHHcCCCC-----------CCeEEEECCEEeccccccccccccCCHHHHHH
Confidence 78888888 789999999999999999999999765 7899999887551 111100 000
Q ss_pred ccccCcccchhhc--cccCC---hhhhHHHHh---cCCcHHHHHHHHHHHHHcCC-----cccccccccchhhHhhcCce
Q 015822 122 GASEGKGRGRQVI--AVSKS---SDIVLMVLD---ASKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS 188 (399)
Q Consensus 122 ~~~~~~~~~~q~~--~~~~~---~d~il~v~d---~~~~~~~~~~i~~~L~~~gi-----~~~~~~~~LS~g~kqr~~ia 188 (399)
.....+++++|.. ..... .+.+.+... ........+++.+.|+.+|+ .+++++.+|||||+||++||
T Consensus 101 ~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA 180 (623)
T PRK10261 101 VRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIA 180 (623)
T ss_pred HhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHH
Confidence 0123467777754 22222 333433222 11222334578889999998 26889999999999999998
Q ss_pred ---------eeeccCCCCCCHHH---HHHHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 ---------FNSTLPLTHVDEKL---CYQILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 ---------li~DEpts~LD~~~---v~~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
|++||||++||... +.++++.+.. ..++|++|||..... .....+++++..-+.
T Consensus 181 ~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~---------~~adri~vl~~G~i~ 248 (623)
T PRK10261 181 MALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVA---------EIADRVLVMYQGEAV 248 (623)
T ss_pred HHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH---------HhCCEEEEeeCCeec
Confidence 99999999999986 5566666653 348999999976532 123566777655443
No 204
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.82 E-value=1e-19 Score=180.79 Aligned_cols=167 Identities=14% Similarity=0.168 Sum_probs=134.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++.||+|.||||||||+++|.|...| ++|.|.++|.++.+-+.. ...+.|+|++
T Consensus 21 d~V~l~v~~--GeIHaLLGENGAGKSTLm~iL~G~~~P-----------~~GeI~v~G~~v~~~sP~---dA~~~GIGMV 84 (501)
T COG3845 21 DDVSLSVKK--GEIHALLGENGAGKSTLMKILFGLYQP-----------DSGEIRVDGKEVRIKSPR---DAIRLGIGMV 84 (501)
T ss_pred CceeeeecC--CcEEEEeccCCCCHHHHHHHHhCcccC-----------CcceEEECCEEeccCCHH---HHHHcCCcEE
Confidence 378888888 789999999999999999999999876 999999999999875432 2346799999
Q ss_pred hhhccccCChhhhHHHHhcCC--------cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 131 RQVIAVSKSSDIVLMVLDASK--------SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~--------~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
+|....+++..+...++-+.. ......++.++.+++|+ ..+.++..||.|++||+.|- |++
T Consensus 85 hQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLIL 164 (501)
T COG3845 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLIL 164 (501)
T ss_pred eeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEE
Confidence 999998888776665543332 22345678888888998 77889999999999999886 999
Q ss_pred ccCCCCCCHHHHHHHHHHhh---hC-CcEEEEcCCCCHH-HHHHHHh
Q 015822 192 TLPLTHVDEKLCYQILHEYK---IH-NAEVLFREDATVD-DLIDVIE 233 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l~---~~-~~~v~vthd~~~~-~~~~~i~ 233 (399)
||||+-|.+.++.+++..++ .. .++++|||.+... .++|.+.
T Consensus 165 DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvT 211 (501)
T COG3845 165 DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVT 211 (501)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeE
Confidence 99999999997777766664 33 4999999986643 4555543
No 205
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=5.2e-20 Score=177.35 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=113.4
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeec---eEEEECCEeecccCccccccccccCc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP---GIIHYNDTKIQLLDLPGIIEGASEGK 127 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~---G~i~~~g~~i~~iD~~Gl~~~~~~~~ 127 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .. |.+.++|.++...+.. .....+
T Consensus 24 ~~v~l~i~~--Ge~~~I~G~nGaGKSTLl~~l~G~~~p-----------~~g~~G~i~i~g~~~~~~~~~----~~~~~i 86 (282)
T PRK13640 24 NDISFSIPR--GSWTALIGHNGSGKSTISKLINGLLLP-----------DDNPNSKITVDGITLTAKTVW----DIREKV 86 (282)
T ss_pred eeEEEEEcC--CCEEEEECCCCCcHHHHHHHHhcccCC-----------CCCCCcEEEECCEECCcCCHH----HHHhhe
Confidence 377888888 789999999999999999999999755 55 8999999887532211 112345
Q ss_pred ccchhhcc-ccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------ee
Q 015822 128 GRGRQVIA-VSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 128 ~~~~q~~~-~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
++.+|... .+.. .|.+.+.... .......+.+.+.++.+|+ ..++++..||+||+||++|+ ++
T Consensus 87 g~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~lll 166 (282)
T PRK13640 87 GIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIII 166 (282)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 66555432 2222 3333322111 1222334567888999998 67899999999999999998 99
Q ss_pred eccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHH
Q 015822 191 STLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDD 227 (399)
Q Consensus 191 ~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~ 227 (399)
+||||++||......+ +..+.. ..+++++||+.....
T Consensus 167 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~ 208 (282)
T PRK13640 167 LDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN 208 (282)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 9999999999865544 444443 348999999986543
No 206
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.82 E-value=2.8e-20 Score=167.50 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=96.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+...+ ...+++.+
T Consensus 17 ~~~~~i~~--G~~~~l~G~nGsGKStLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~~~~----~~~i~~~~ 79 (180)
T cd03214 17 DLSLSIEA--GEIVGILGPNGAGKSTLLKTLAGLLKP-----------SSGEILLDGKDLASLSPKEL----ARKIAYVP 79 (180)
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCcCCHHHH----HHHHhHHH
Confidence 67888887 789999999999999999999998765 89999999987753332110 01122222
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~ 200 (399)
| .++.+|+ .+++.+..||+||+||++++ +++||||++||.
T Consensus 80 q-----------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~ 130 (180)
T cd03214 80 Q-----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130 (180)
T ss_pred H-----------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 2 5666666 45778899999999999998 999999999998
Q ss_pred HHHHH---HHHHhhh--CCcEEEEcCCCCH
Q 015822 201 KLCYQ---ILHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 201 ~~v~~---ll~~l~~--~~~~v~vthd~~~ 225 (399)
..... ++..+.. ..+++++||+...
T Consensus 131 ~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 131 AHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 85544 4445443 3489999999765
No 207
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.82 E-value=1.7e-19 Score=168.14 Aligned_cols=148 Identities=21% Similarity=0.193 Sum_probs=104.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++..... +..+.+
T Consensus 40 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~---------~~~~~~ 97 (224)
T cd03220 40 DVSFEVPR--GERIGLIGRNGAGKSTLLRLLAGIYPP-----------DSGTVTVRGRVSSLLGL---------GGGFNP 97 (224)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEchhhcc---------cccCCC
Confidence 77888888 779999999999999999999998755 89999999987542211 001100
Q ss_pred hhccccCChhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCC
Q 015822 132 QVIAVSKSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~L 198 (399)
...-.+.+.+..... ......+.+.+.++.+++ .+++++..||+||+||++++ +++||||++|
T Consensus 98 ----~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 98 ----ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred ----CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 011122222221111 122223456777888888 56888999999999999988 9999999999
Q ss_pred CHHHHH---HHHHHhhhC-CcEEEEcCCCCH
Q 015822 199 DEKLCY---QILHEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 199 D~~~v~---~ll~~l~~~-~~~v~vthd~~~ 225 (399)
|..... +++..+... .+++++||+...
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~~ 204 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 998544 445444433 489999999654
No 208
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.7e-19 Score=170.25 Aligned_cols=176 Identities=14% Similarity=0.169 Sum_probs=119.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|..|.+.++|.++.-.+.. ..+..+++.+
T Consensus 20 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--------~~~~~G~i~~~g~~i~~~~~~----~~~~~i~~~~ 85 (246)
T PRK14269 20 DINMQIEQ--NKITALIGASGCGKSTFLRCFNRMNDK--------IAKIDGLVEIEGKDVKNQDVV----ALRKNVGMVF 85 (246)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC--------CCCCceEEEECCEecccCCHH----HHhhhEEEEe
Confidence 77888887 789999999999999999999998632 014789999999887543321 1233456666
Q ss_pred hhccccCC--hhhhHHHHhcC----CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 132 QVIAVSKS--SDIVLMVLDAS----KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~----~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|....+.. .+.+.+..... ........+.+.++.+++ ..++.+..||+||+||++++ ++
T Consensus 86 q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 165 (246)
T PRK14269 86 QQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLL 165 (246)
T ss_pred cCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 65443331 23332211111 112233456788898887 25678899999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 191 STLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+||||++||......+++.+. ...+++++||+..... .....+++++...+
T Consensus 166 LDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~---------~~~d~i~~l~~G~i 219 (246)
T PRK14269 166 LDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK---------RVADYTAFFHLGEL 219 (246)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH---------hhCcEEEEEECCEE
Confidence 999999999986555555443 3458999999976432 12355667765543
No 209
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.82 E-value=7.9e-20 Score=173.23 Aligned_cols=162 Identities=19% Similarity=0.110 Sum_probs=108.4
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe-----ecccCcccccccccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-----IQLLDLPGIIEGASE 125 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-----i~~iD~~Gl~~~~~~ 125 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.+ +...+..........
T Consensus 20 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (253)
T TIGR02323 20 RDVSFDLYP--GEVLGIVGESGSGKSTLLGCLAGRLAP-----------DHGTATYIMRSGAELELYQLSEAERRRLMRT 86 (253)
T ss_pred ecceEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEecccccccccccCCHHHHHHhhhc
Confidence 378888888 779999999999999999999999765 78999998865 322221110001122
Q ss_pred Ccccchhhcc--ccCC---hhhhHHHH---hcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce------
Q 015822 126 GKGRGRQVIA--VSKS---SDIVLMVL---DASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------ 188 (399)
Q Consensus 126 ~~~~~~q~~~--~~~~---~d~il~v~---d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------ 188 (399)
++++.+|... .... .+.+.... .........+.+.++|+.+++ .+++.+..||+||+||+++|
T Consensus 87 ~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 166 (253)
T TIGR02323 87 EWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTR 166 (253)
T ss_pred ceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcC
Confidence 3455555421 1111 11221111 111111223567788999988 46788999999999999998
Q ss_pred ---eeeccCCCCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCH
Q 015822 189 ---FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV 225 (399)
Q Consensus 189 ---li~DEpts~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~ 225 (399)
+++||||++||......+++.+ .. ..++|++||+...
T Consensus 167 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~ 211 (253)
T TIGR02323 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV 211 (253)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999998655554444 32 3589999999754
No 210
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.82 E-value=5.6e-20 Score=189.55 Aligned_cols=170 Identities=17% Similarity=0.196 Sum_probs=110.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC-EeecccCc-cccccc------c
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDL-PGIIEG------A 123 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~iD~-~Gl~~~------~ 123 (399)
++++.+.. |.+|||||+|||||||||++|+|...+ ..|.|...+ ..+.++.- +..... .
T Consensus 21 ~~~l~~~~--G~riGLvG~NGaGKSTLLkilaG~~~~-----------~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v 87 (530)
T COG0488 21 NVSLTLNP--GERIGLVGRNGAGKSTLLKILAGELEP-----------DSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYV 87 (530)
T ss_pred CCcceeCC--CCEEEEECCCCCCHHHHHHHHcCCCcC-----------CCCeEeecCCceEEEeCCCCCcCCCccHHHHH
Confidence 77888888 789999999999999999999999865 888887754 33333210 000000 0
Q ss_pred ccCcccchhhccc-------cCCh-----hhhHHHHhcCCcHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCce--
Q 015822 124 SEGKGRGRQVIAV-------SKSS-----DIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS-- 188 (399)
Q Consensus 124 ~~~~~~~~q~~~~-------~~~~-----d~il~v~d~~~~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~ia-- 188 (399)
..+.....+.... .... +-+..............++...|..+|+ ..+++...|||||+.|+++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~a 167 (530)
T COG0488 88 IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARA 167 (530)
T ss_pred HhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHH
Confidence 0000000000000 0000 0000000001111223456677777888 33889999999999999998
Q ss_pred -------eeeccCCCCCCHHHHHHHHHHhh-hCCcEEEEcCC-CCHHHHHHHHhh
Q 015822 189 -------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFRED-ATVDDLIDVIEG 234 (399)
Q Consensus 189 -------li~DEpts~LD~~~v~~ll~~l~-~~~~~v~vthd-~~~~~~~~~i~~ 234 (399)
|++||||||||.+.+.-+-..+. +++++|+|||| ..++.+|+.+..
T Consensus 168 L~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ 222 (530)
T COG0488 168 LLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILE 222 (530)
T ss_pred HhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEE
Confidence 99999999999999888777775 67799999999 667888877643
No 211
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7.7e-20 Score=171.16 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=113.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+. ....+++.
T Consensus 17 ~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~g~~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~~ 77 (232)
T cd03300 17 DGVSLDIKE--GEFFTLLGPSGCGKTTLLRLIAGFETP-----------TSGEILLDGKDITNLPP------HKRPVNTV 77 (232)
T ss_pred ccceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCh------hhcceEEE
Confidence 377888888 789999999999999999999999765 88999999987753221 12345555
Q ss_pred hhhccccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....+.. .|.+.+.... ..+......+...++.+|+ .+++.+..||+||+||+.++ +++|||
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 555444433 2333322221 1122234456788888998 67888999999999999988 999999
Q ss_pred CCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~ 225 (399)
|++||......+ +..+.. ..+++++||+...
T Consensus 158 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~ 193 (232)
T cd03300 158 LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE 193 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 999999855544 455443 3599999999754
No 212
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.82 E-value=1.3e-19 Score=189.19 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=115.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.. |+++||+|+||||||||+++|+|...+.. ..|.+|.+.++|.++...+...+.......+++.
T Consensus 26 ~~isl~i~~--Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v 97 (529)
T PRK15134 26 NDVSLQIEA--GETLALVGESGSGKSVTALSILRLLPSPP------VVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMI 97 (529)
T ss_pred eceEEEEeC--CCEEEEECCCCCcHHHHHHHHhcCCCCCc------CCccceEEEECCEecccCCHHHHHHHhcCceEEE
Confidence 377888888 78999999999999999999999975310 0136899999999875443221111112346666
Q ss_pred hhhcc--ccCC---hhhhHHHHh---cCCcHHHHHHHHHHHHHcCCc-----ccccccccchhhHhhcCce---------
Q 015822 131 RQVIA--VSKS---SDIVLMVLD---ASKSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 131 ~q~~~--~~~~---~d~il~v~d---~~~~~~~~~~i~~~L~~~gi~-----~~~~~~~LS~g~kqr~~ia--------- 188 (399)
+|... .... .+.+..... ........+++.+.|+.+|+. +++++.+||+||+||++||
T Consensus 98 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~l 177 (529)
T PRK15134 98 FQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPEL 177 (529)
T ss_pred ecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 66532 1111 122222111 112223346688899999982 4788999999999999998
Q ss_pred eeeccCCCCCCHHHHHHHH---HHhhh--CCcEEEEcCCCCHH
Q 015822 189 FNSTLPLTHVDEKLCYQIL---HEYKI--HNAEVLFREDATVD 226 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll---~~l~~--~~~~v~vthd~~~~ 226 (399)
+++||||++||+.....++ +.+.. ..++|++|||....
T Consensus 178 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 220 (529)
T PRK15134 178 LIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV 220 (529)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH
Confidence 9999999999998655554 44432 35899999997653
No 213
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2e-19 Score=171.05 Aligned_cols=181 Identities=15% Similarity=0.120 Sum_probs=118.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.+||+|+||||||||+++|+|...+..+ .|.+|.+.++|.++...+. .. ......+++.
T Consensus 29 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~-~~-~~~~~~i~~v 98 (258)
T PRK14268 29 KNVSMQIPK--NSVTALIGPSGCGKSTFIRCLNRMNDLIKN------CRIEGKVSIEGEDIYEPDV-DV-VELRKNVGMV 98 (258)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCcccC------CCcceEEEECCEEcccccc-hH-HHHhhhEEEE
Confidence 377888888 789999999999999999999998643000 0268999999987643211 00 0112345565
Q ss_pred hhhccccC--ChhhhHHHHhcC--CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 131 RQVIAVSK--SSDIVLMVLDAS--KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 131 ~q~~~~~~--~~d~il~v~d~~--~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
+|....+. -.+.+.+..... ........+.+.++.+++ .+++++..||+||+||++++ +++
T Consensus 99 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 178 (258)
T PRK14268 99 FQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILF 178 (258)
T ss_pred ecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 55433332 123333222111 112223456778888876 25778899999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||||++||......+ ++++....++|++|||..... .....+++++..-+
T Consensus 179 DEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~---------~~~d~i~~l~~G~i 231 (258)
T PRK14268 179 DEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAA---------RISDYTGFFLMGEL 231 (258)
T ss_pred eCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHH---------HhCCEEEEEECCEE
Confidence 999999999855444 444433358999999976432 12356677776543
No 214
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.5e-19 Score=174.77 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=109.6
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecc-cCccccccccccCccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIEGASEGKGR 129 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~-iD~~Gl~~~~~~~~~~ 129 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.. .....-....+..+++
T Consensus 28 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~ 94 (289)
T PRK13645 28 NNTSLTFKK--NKVTCVIGTTGSGKSTMIQLTNGLIIS-----------ETGQTIVGDYAIPANLKKIKEVKRLRKEIGL 94 (289)
T ss_pred eeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEccccccccccHHHHhccEEE
Confidence 377888888 779999999999999999999999765 88999999987631 1100000111234555
Q ss_pred chhhcc--ccC--ChhhhHHHHh--cCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eee
Q 015822 130 GRQVIA--VSK--SSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 130 ~~q~~~--~~~--~~d~il~v~d--~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
..|... .+. -.+.+.+... ........+.+.+.++.+++ ..++++..||+||+||++++ +++
T Consensus 95 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlL 174 (289)
T PRK13645 95 VFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVL 174 (289)
T ss_pred EEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 555421 111 1222222111 11122223456778888888 46788999999999999998 999
Q ss_pred ccCCCCCCHHHHHHHH---HHhhh--CCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQIL---HEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll---~~l~~--~~~~v~vthd~~~ 225 (399)
||||++||......++ ..+.. ..++|++||+...
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~ 213 (289)
T PRK13645 175 DEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ 213 (289)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999999998655554 44432 3489999999764
No 215
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.5e-19 Score=187.71 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=111.6
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.... +. .....++++.
T Consensus 270 ~~isl~i~~--Ge~~~iiG~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~g~~~~~~~-~~--~~~~~~i~~~ 333 (501)
T PRK11288 270 EPISFSVRA--GEIVGLFGLVGAGRSELMKLLYGATRR-----------TAGQVYLDGKPIDIRS-PR--DAIRAGIMLC 333 (501)
T ss_pred cceeEEEeC--CcEEEEEcCCCCCHHHHHHHHcCCCcC-----------CCceEEECCEECCCCC-HH--HHHhCCCEEc
Confidence 377888888 789999999999999999999999755 8999999998764211 11 1112345555
Q ss_pred hhhcc---ccCCh---hhhHHHHhcC--------CcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce-----
Q 015822 131 RQVIA---VSKSS---DIVLMVLDAS--------KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS----- 188 (399)
Q Consensus 131 ~q~~~---~~~~~---d~il~v~d~~--------~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia----- 188 (399)
+|... .+... +.+.+..... ......+.+.+.|+.+++ ..++++..||+||+||+.||
T Consensus 334 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~ 413 (501)
T PRK11288 334 PEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE 413 (501)
T ss_pred CcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc
Confidence 55421 22221 2221110000 111223467889999998 36888999999999999998
Q ss_pred ----eeeccCCCCCCHHHHHHHHH---Hhhh-CCcEEEEcCCCCHH
Q 015822 189 ----FNSTLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 189 ----li~DEpts~LD~~~v~~ll~---~l~~-~~~~v~vthd~~~~ 226 (399)
+++||||++||......+++ .+.. ..++|++|||....
T Consensus 414 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~ 459 (501)
T PRK11288 414 DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEV 459 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 99999999999986655554 4443 45999999997643
No 216
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.2e-19 Score=170.94 Aligned_cols=164 Identities=16% Similarity=0.071 Sum_probs=111.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+. | ..|..|.+.++|.++...+.+ .......+++.+
T Consensus 31 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p---~~p~~G~i~~~g~~~~~~~~~--~~~~~~~i~~~~ 100 (260)
T PRK10744 31 NINLDIAK--NQVTAFIGPSGCGKSTLLRTFNRMYELY---P---EQRAEGEILLDGENILTPKQD--IALLRAKVGMVF 100 (260)
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccC---C---CCCcceEEEECCEEccccccc--hHHHhcceEEEe
Confidence 77888888 7899999999999999999999986420 0 023689999999876421111 011223456666
Q ss_pred hhccccC--ChhhhHHHHhc---CCcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSK--SSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~--~~d~il~v~d~---~~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+. -.+.+.+.... .......+++.+.++.+++ .+++.+..||+||+||++++ +++
T Consensus 101 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllL 180 (260)
T PRK10744 101 QKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLL 180 (260)
T ss_pred cCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 6543332 12333222221 1122223567788888886 25778899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~ 225 (399)
||||++||......+++ ++....++|++||+...
T Consensus 181 DEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 217 (260)
T PRK10744 181 DEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ 217 (260)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 99999999986554444 44333489999999754
No 217
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.2e-19 Score=169.89 Aligned_cols=164 Identities=18% Similarity=0.154 Sum_probs=109.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...... -+|..|.+.++|.++...+. .. .....++++.+
T Consensus 21 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~------~~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i~~v~ 90 (250)
T PRK14245 21 GISMEIEE--KSVVAFIGPSGCGKSTFLRLFNRMNDLIP------ATRLEGEIRIDGRNIYDKGV-QV-DELRKNVGMVF 90 (250)
T ss_pred eeeEEEeC--CCEEEEECCCCCCHHHHHHHHhhhhcccC------CCCCceEEEECCEecccccc-cH-HHHhhheEEEe
Confidence 77888888 77999999999999999999999631000 01258999999988753211 00 11223456666
Q ss_pred hhccccCC--hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+..... ......+.+.+.++.+++ .+++++..||+||+||++++ +++
T Consensus 91 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 170 (250)
T PRK14245 91 QRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLM 170 (250)
T ss_pred cCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65433321 23333222211 112233456778888886 25678899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~ 225 (399)
||||++||......+++.+ ....++|++||+...
T Consensus 171 DEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 207 (250)
T PRK14245 171 DEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQ 207 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 9999999998655544444 333589999999764
No 218
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-19 Score=183.59 Aligned_cols=178 Identities=16% Similarity=0.188 Sum_probs=127.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |..+||||++|||||||+++|+|..++ ..|++.+||.+..-++...++ +.+.++
T Consensus 338 ~~l~~t~~~--g~~talvG~SGaGKSTLl~lL~G~~~~-----------~~G~I~vng~~l~~l~~~~~~----k~i~~v 400 (559)
T COG4988 338 SDLNLTIKA--GQLTALVGASGAGKSTLLNLLLGFLAP-----------TQGEIRVNGIDLRDLSPEAWR----KQISWV 400 (559)
T ss_pred CCceeEecC--CcEEEEECCCCCCHHHHHHHHhCcCCC-----------CCceEEECCccccccCHHHHH----hHeeee
Confidence 378888888 779999999999999999999999876 899999999998877654433 334555
Q ss_pred hhhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--c----------ccccccccchhhHhhcCce--------
Q 015822 131 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R----------LNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~----------~~~~~~~LS~g~kqr~~ia-------- 188 (399)
.|....+.. .+++.+- .+....+.+.+.++..|+ . +...-..|||||+||+++|
T Consensus 401 ~Q~p~lf~gTireNi~l~----~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 401 SQNPYLFAGTIRENILLA----RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred CCCCccccccHHHHhhcc----CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 565544443 3443332 111223446666666655 2 2233456999999999998
Q ss_pred -eeeccCCCCCCHHH---HHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH
Q 015822 189 -FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (399)
Q Consensus 189 -li~DEpts~LD~~~---v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l 259 (399)
+++||||+|||.++ +.+.+.++....+++++||+..... ..++|+|+|..-++.....+++
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~----------~~D~I~vld~G~l~~~g~~~~L 541 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA----------DADRIVVLDNGRLVEQGTHEEL 541 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHh----------cCCEEEEecCCceeccCCHHHH
Confidence 99999999999885 4444555556679999999976533 3588999998866544444444
No 219
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=8.8e-20 Score=171.14 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=112.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++.-.+. ....+++.+
T Consensus 17 ~is~~i~~--Ge~~~i~G~nG~GKStLl~~l~G~~~p-----------~~G~v~i~g~~~~~~~~------~~~~i~~~~ 77 (235)
T cd03299 17 NVSLEVER--GDYFVILGPTGSGKSVLLETIAGFIKP-----------DSGKILLNGKDITNLPP------EKRDISYVP 77 (235)
T ss_pred eeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcCcCCh------hHcCEEEEe
Confidence 67888887 789999999999999999999998765 88999999987643221 123455555
Q ss_pred hhccccCChhh---hHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDI---VLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~---il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+....+ +.+..... ......+.+.+.++.+++ .+++.+..||+||+||++|+ +++||||
T Consensus 78 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 157 (235)
T cd03299 78 QNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157 (235)
T ss_pred ecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 55444433333 32221111 122234456788889998 67888999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~ 225 (399)
++||......+ ++.+.. ..++|++||+...
T Consensus 158 ~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~ 192 (235)
T cd03299 158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE 192 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999865554 444432 4589999999764
No 220
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=6.6e-20 Score=162.01 Aligned_cols=160 Identities=31% Similarity=0.460 Sum_probs=111.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE-eecccCccccccccccCcccchhhccccCChhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.|+|+|++|||||||+|+|++....++++||+|++|..|.+.+++. .+.++||||+.........+...++..+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999998878899999999999999999887 999999999864332222233444445567899
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++++|++.+....+.+..++ +.+..
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~--------------------------------------------~~l~~---------- 107 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIR--------------------------------------------NELEL---------- 107 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHH--------------------------------------------HHHHH----------
Confidence 999999876511111111111 11100
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCChhhH----HHHH-c--CCCEEEecchhccchHHHHHHHHHH
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLA-R--QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~----~~l~-~--~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
. ......+|.++|+||+|+...... ..+. . ..+++++||+++.|++++.+.+.+.
T Consensus 108 --------~-~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 108 --------Y-NPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred --------h-CccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 0 000124799999999998754332 2222 2 3458999999999999999888764
No 221
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2e-19 Score=172.10 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=116.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+.. .-|..|.+.++|.++...+.. . ...+..+++.
T Consensus 30 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~------~~p~~G~v~~~g~~i~~~~~~-~-~~~~~~i~~v 99 (269)
T PRK14259 30 KNVFCDIPR--GKVTALIGPSGCGKSTVLRSLNRMNDLIE------GCSLKGRVLFDGTDLYDPRVD-P-VEVRRRIGMV 99 (269)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhccccccC------CCCCceEEEECCEEcccccCC-H-HHHhhceEEE
Confidence 377888888 78999999999999999999999864200 003789999999876421110 0 0112345666
Q ss_pred hhhccccCC--hhhhHHHHhcCC-cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eeec
Q 015822 131 RQVIAVSKS--SDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~~-~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
+|....+.. .+.+.+...... .....+.+.+.++.+++ .+++++..||+||+||++++ +++|
T Consensus 100 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 179 (269)
T PRK14259 100 FQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMD 179 (269)
T ss_pred ccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 665433332 222222111111 11223455667777765 35778899999999999998 9999
Q ss_pred cCCCCCCHHHHHHH---HHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEec
Q 015822 193 LPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 247 (399)
Q Consensus 193 Epts~LD~~~v~~l---l~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK 247 (399)
|||++||......+ ++.+....++|++||+..... .....+++++.
T Consensus 180 EPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~---------~~~d~i~~l~~ 228 (269)
T PRK14259 180 EPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAV---------RVSDMTAFFNA 228 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH---------HhcCEEEEEec
Confidence 99999999855544 444433358999999975432 12356777774
No 222
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.81 E-value=1.3e-19 Score=170.30 Aligned_cols=155 Identities=22% Similarity=0.217 Sum_probs=112.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+. ....+++.+
T Consensus 18 ~is~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~i~g~~~~~~~~------~~~~i~~~~ 78 (237)
T TIGR00968 18 DVNLEVPT--GSLVALLGPSGSGKSTLLRIIAGLEQP-----------DSGRIRLNGQDATRVHA------RDRKIGFVF 78 (237)
T ss_pred eEEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCh------hhcCEEEEe
Confidence 67888887 789999999999999999999998755 89999999987753321 123455656
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.++++.+++ ..++.+..||+||+||+.++ +++||||
T Consensus 79 q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (237)
T TIGR00968 79 QHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158 (237)
T ss_pred cChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 55444443 23332222111 112234557788999988 67888999999999999988 9999999
Q ss_pred CCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQILHEY---KI--HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~ 225 (399)
++||......+++.+ .. ..++|++||+...
T Consensus 159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~ 193 (237)
T TIGR00968 159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999998655554444 33 3589999999764
No 223
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.81 E-value=2e-19 Score=186.75 Aligned_cols=159 Identities=13% Similarity=0.182 Sum_probs=112.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.. |++++|+|+||||||||+++|+|...+ ..|.|.++|.++.-.+.. ...+.++++.
T Consensus 269 ~~vsl~i~~--Ge~~~liG~NGsGKSTLl~~l~G~~~p-----------~~G~I~~~g~~i~~~~~~---~~~~~~i~~v 332 (501)
T PRK10762 269 NDVSFTLRK--GEILGVSGLMGAGRTELMKVLYGALPR-----------TSGYVTLDGHEVVTRSPQ---DGLANGIVYI 332 (501)
T ss_pred ccceEEEcC--CcEEEEecCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCHH---HHHHCCCEEe
Confidence 377888887 789999999999999999999999765 889999999876432210 1122356666
Q ss_pred hhhc---cccCChhh---hHHH-Hhc-------CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce-----
Q 015822 131 RQVI---AVSKSSDI---VLMV-LDA-------SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS----- 188 (399)
Q Consensus 131 ~q~~---~~~~~~d~---il~v-~d~-------~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia----- 188 (399)
+|.. ..+....+ +.+. ... .......+.+.++|+.+++ ..++++..||+||+||+.+|
T Consensus 333 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~ 412 (501)
T PRK10762 333 SEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMT 412 (501)
T ss_pred cCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhh
Confidence 6653 12232222 2211 000 0112234567888999988 36888999999999999998
Q ss_pred ----eeeccCCCCCCHHHHH---HHHHHhhhC-CcEEEEcCCCCH
Q 015822 189 ----FNSTLPLTHVDEKLCY---QILHEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 189 ----li~DEpts~LD~~~v~---~ll~~l~~~-~~~v~vthd~~~ 225 (399)
+++||||++||..... ++++.+... .++|++|||...
T Consensus 413 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~ 457 (501)
T PRK10762 413 RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE 457 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 9999999999998554 445554433 489999999764
No 224
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.81 E-value=1.9e-19 Score=186.82 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=112.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ +|.+|.+.++|.++...+... .....+++.
T Consensus 18 ~~isl~i~~--Ge~~~liG~nGsGKSTLl~~i~G~~~~---------~~~~G~i~~~g~~~~~~~~~~---~~~~~i~~v 83 (500)
T TIGR02633 18 DGIDLEVRP--GECVGLCGENGAGKSTLMKILSGVYPH---------GTWDGEIYWSGSPLKASNIRD---TERAGIVII 83 (500)
T ss_pred cceEEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCHHH---HHhCCEEEE
Confidence 378888888 779999999999999999999998643 136899999998875332111 112346666
Q ss_pred hhhccccCChhh---hHHHHhc------CCcHHHHHHHHHHHHHcCC--cc-cccccccchhhHhhcCce---------e
Q 015822 131 RQVIAVSKSSDI---VLMVLDA------SKSEGHRQILTKELEAVGL--RL-NKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 131 ~q~~~~~~~~d~---il~v~d~------~~~~~~~~~i~~~L~~~gi--~~-~~~~~~LS~g~kqr~~ia---------l 189 (399)
+|....+....+ +.+.... .......+.+.++|+.+++ .. ++++..||+||+||+.|| +
T Consensus 84 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ll 163 (500)
T TIGR02633 84 HQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLL 163 (500)
T ss_pred eeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 665444333232 2221111 1112234567888999998 23 567899999999999998 9
Q ss_pred eeccCCCCCCHHHHHHH---HHHhhhC-CcEEEEcCCCCH
Q 015822 190 NSTLPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 190 i~DEpts~LD~~~v~~l---l~~l~~~-~~~v~vthd~~~ 225 (399)
++||||++||+.....+ ++.+... .++|++|||...
T Consensus 164 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~ 203 (500)
T TIGR02633 164 ILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE 203 (500)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 99999999999865555 4444433 489999999764
No 225
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.9e-19 Score=172.06 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=110.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+.. -.|..|.|.++|.++...+.. . ...+..+++.+
T Consensus 37 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~I~~~g~~i~~~~~~-~-~~~~~~i~~v~ 106 (267)
T PRK14235 37 DVDLDIPE--KTVTAFIGPSGCGKSTFLRCLNRMNDTID------GCRVTGKITLDGEDIYDPRLD-V-VELRARVGMVF 106 (267)
T ss_pred EEEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhccccc------CCCCceEEEECCEECcccccc-h-HHHhhceEEEe
Confidence 77888887 78999999999999999999999864200 013789999999877432110 0 01123455655
Q ss_pred hhccccCC--hhhhHHHHhcC----CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 132 QVIAVSKS--SDIVLMVLDAS----KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~----~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|....+.. .+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++++ ++
T Consensus 107 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 186 (267)
T PRK14235 107 QKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL 186 (267)
T ss_pred cCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 55433332 23332221111 112223456788888887 24678899999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~ 225 (399)
+||||++||......+++ .+....+++++||+...
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~ 224 (267)
T PRK14235 187 MDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQ 224 (267)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHH
Confidence 999999999986555444 44333489999999654
No 226
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=2.1e-19 Score=181.58 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=130.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+|.||||||||+|.|+|...| ++|.|.++|.++.+.++. .....|+..++
T Consensus 26 ~v~l~v~~--GEV~aL~GeNGAGKSTLmKiLsGv~~p-----------~~G~I~~~G~~~~~~sp~---~A~~~GI~~V~ 89 (500)
T COG1129 26 GVSLTVRP--GEVHALLGENGAGKSTLMKILSGVYPP-----------DSGEILIDGKPVAFSSPR---DALAAGIATVH 89 (500)
T ss_pred cceeEEeC--ceEEEEecCCCCCHHHHHHHHhCcccC-----------CCceEEECCEEccCCCHH---HHHhCCcEEEe
Confidence 88999999 789999999999999999999999876 999999999999875532 23457888899
Q ss_pred hhccccCChhhhHHHHhcCC---------cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKSSDIVLMVLDASK---------SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~---------~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|.++.+++.++...++-... .........++|..+++ ..+.++.+||++|+|.+.|| +++
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999776655432222 13345567788888887 47888999999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhhCC-cEEEEcCCCCH-HHHHHHH
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKIHN-AEVLFREDATV-DDLIDVI 232 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~~~-~~v~vthd~~~-~~~~~~i 232 (399)
||||++|+..++..+ ++.++..+ ++|+|||.+.. -+++|.+
T Consensus 170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dri 215 (500)
T COG1129 170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRI 215 (500)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEE
Confidence 999999998865554 45555455 99999997543 3444443
No 227
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1e-19 Score=174.86 Aligned_cols=173 Identities=17% Similarity=0.147 Sum_probs=121.3
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+.. .....+++.
T Consensus 24 ~~v~l~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~~~----~~~~~i~~v 86 (277)
T PRK13642 24 NGVSFSITK--GEWVSIIGQNGSGKSTTARLIDGLFEE-----------FEGKVKIDGELLTAENVW----NLRRKIGMV 86 (277)
T ss_pred eeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEECCcCCHH----HHhcceEEE
Confidence 377888888 789999999999999999999999865 899999999876432211 123445666
Q ss_pred hhhcc-ccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 131 RQVIA-VSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 131 ~q~~~-~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
+|... .+.. .+.+.+.... .......+.+...++.+|+ ..++++..||+||+||+.|| +++||
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDE 166 (277)
T PRK13642 87 FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE 166 (277)
T ss_pred EECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 65432 2222 3333322211 1222223467788888898 67888999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 194 PLTHVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||++||......+++.+ .. ..++|++||+...... ...+++++..-+
T Consensus 167 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~----------~d~i~~l~~G~i 218 (277)
T PRK13642 167 STSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS----------SDRILVMKAGEI 218 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh----------CCEEEEEECCEE
Confidence 99999998655555444 33 3489999999876432 345666665443
No 228
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.81 E-value=1.8e-19 Score=170.72 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=100.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.+++.. .+++.+
T Consensus 22 ~vs~~i~~--Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~~~~---------------~i~~v~ 73 (251)
T PRK09544 22 DVSLELKP--GKILTLLGPNGAGKSTLVRVVLGLVAP-----------DEGVIKRNGKL---------------RIGYVP 73 (251)
T ss_pred eEEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCcc---------------CEEEec
Confidence 67888887 789999999999999999999998765 88999987621 122222
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCC
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~L 198 (399)
|....... ..+..++. .. +....+.+.+.++.+++ .+++++..||+||+||++++ +++||||++|
T Consensus 74 q~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 151 (251)
T PRK09544 74 QKLYLDTTLPLTVNRFLR-LR-PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151 (251)
T ss_pred cccccccccChhHHHHHh-cc-ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 22111111 01111111 11 11112456778889998 57888999999999999998 9999999999
Q ss_pred CHHHHHHHH---HHhhh--CCcEEEEcCCCCH
Q 015822 199 DEKLCYQIL---HEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 199 D~~~v~~ll---~~l~~--~~~~v~vthd~~~ 225 (399)
|......++ ..+.. ..++|++||+...
T Consensus 152 D~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 152 DVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 998655544 44432 3489999999765
No 229
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.7e-19 Score=164.76 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=124.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+..|++|+|||||||+|++|+|...+ ++|.|.|+|.++.... ...+|+.+
T Consensus 20 ~isf~v~~--G~i~GllG~NGAGKTTtfRmILglle~-----------~~G~I~~~g~~~~~~~--------~~rIGyLP 78 (300)
T COG4152 20 NISFEVPP--GEIFGLLGPNGAGKTTTFRMILGLLEP-----------TEGEITWNGGPLSQEI--------KNRIGYLP 78 (300)
T ss_pred ceeeeecC--CeEEEeecCCCCCccchHHHHhccCCc-----------cCceEEEcCcchhhhh--------hhhcccCh
Confidence 88898888 789999999999999999999999766 9999999998875432 23456666
Q ss_pred hhccccCCh---hhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
+...+++.. |.+.+... +....+....+..+|+++++ ...+++..||-|.+|++.+. +++|||+
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 665556654 44444433 33445556778999999999 77889999999999998654 9999999
Q ss_pred CCCCHHH---HHHHHHHhhhCC-cEEEEcCCCC-HHHHHHHH
Q 015822 196 THVDEKL---CYQILHEYKIHN-AEVLFREDAT-VDDLIDVI 232 (399)
Q Consensus 196 s~LD~~~---v~~ll~~l~~~~-~~v~vthd~~-~~~~~~~i 232 (399)
||||+-+ +++.+.+++..+ |+++.||.+. .+++||.+
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhh
Confidence 9999864 555566666444 8999999866 45677754
No 230
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.4e-19 Score=186.36 Aligned_cols=160 Identities=9% Similarity=0.142 Sum_probs=112.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ |.+|.|.++|.++..... ......++++.+
T Consensus 280 ~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~~----------~~~G~i~~~g~~~~~~~~---~~~~~~~i~~v~ 344 (506)
T PRK13549 280 DVSFSLRR--GEILGIAGLVGAGRTELVQCLFGAYPG----------RWEGEIFIDGKPVKIRNP---QQAIAQGIAMVP 344 (506)
T ss_pred ceeeEEcC--CcEEEEeCCCCCCHHHHHHHHhCCCCC----------CCCcEEEECCEECCCCCH---HHHHHCCCEEeC
Confidence 67888888 789999999999999999999999752 278999999987642211 011123466666
Q ss_pred hhc---cccCC---hhhhHHHH-hcC------CcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce-------
Q 015822 132 QVI---AVSKS---SDIVLMVL-DAS------KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (399)
Q Consensus 132 q~~---~~~~~---~d~il~v~-d~~------~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------- 188 (399)
|.. ..+.. .+.+.+.. ... ......+.+.+.|+.+++ ..++++..||+||+||+.||
T Consensus 345 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p 424 (506)
T PRK13549 345 EDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNP 424 (506)
T ss_pred cchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCC
Confidence 653 12222 23232211 111 112234567889999998 35888999999999999998
Q ss_pred --eeeccCCCCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCHH
Q 015822 189 --FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~~ 226 (399)
+++||||++||+..... ++..+.. ..++|++|||....
T Consensus 425 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~ 468 (506)
T PRK13549 425 KILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEV 468 (506)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 99999999999985554 4555543 34899999997653
No 231
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.81 E-value=1.9e-19 Score=167.78 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=107.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ -.|..|.+.++|.++.. .....++++.
T Consensus 24 ~~vsl~i~~--Ge~~~l~G~nGsGKSTLlk~l~G~~~~--------~~~~~G~i~~~g~~~~~-------~~~~~~i~~~ 86 (226)
T cd03234 24 NDVSLHVES--GQVMAILGSSGSGKTTLLDAISGRVEG--------GGTTSGQILFNGQPRKP-------DQFQKCVAYV 86 (226)
T ss_pred cCceEEEcC--CeEEEEECCCCCCHHHHHHHHhCccCC--------CCCCceEEEECCEECCh-------HHhcccEEEe
Confidence 377888888 789999999999999999999998751 01278999999987631 1123445666
Q ss_pred hhhccccCC---hhhhHHHHhcC--C--c-HHHHHHHHH-HHHHcCC--cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSKS---SDIVLMVLDAS--K--S-EGHRQILTK-ELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~--~--~-~~~~~~i~~-~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+.. .+.+.+..... . . ......+.. .|+.+++ ..++.+..||+||+||++++ ++
T Consensus 87 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ill 166 (226)
T cd03234 87 RQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLI 166 (226)
T ss_pred CCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEE
Confidence 665444433 23333221111 1 1 111123444 6888887 46788899999999999988 99
Q ss_pred eccCCCCCCHHHHHH---HHHHhhh-CCcEEEEcCCC
Q 015822 191 STLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDA 223 (399)
Q Consensus 191 ~DEpts~LD~~~v~~---ll~~l~~-~~~~v~vthd~ 223 (399)
+||||++||...... ++.++.. ..+++++||+.
T Consensus 167 lDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 167 LDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 999999999885444 4444443 34899999997
No 232
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.3e-19 Score=170.53 Aligned_cols=179 Identities=17% Similarity=0.134 Sum_probs=116.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|..... | ..|..|.+.++|.++.... +.. .....++++.+
T Consensus 39 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~i~~~~-~~~-~~~~~~i~~v~ 108 (268)
T PRK14248 39 DISMDIEK--HAVTALIGPSGCGKSTFLRSINRMNDLI---P---SARSEGEILYEGLNILDSN-INV-VNLRREIGMVF 108 (268)
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHHhccccc---C---CCCCceEEEECCEEccccc-ccH-HHHhccEEEEe
Confidence 77888888 7899999999999999999999975310 0 0137899999998764311 100 01133456666
Q ss_pred hhccccCC--hhhhHHHHhcCC--c-HHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDASK--S-EGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~--~-~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+...... . ....+.+.+.+..+++ .+++++..||+||+||++|+ +++
T Consensus 109 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllL 188 (268)
T PRK14248 109 QKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLL 188 (268)
T ss_pred cCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 65443332 222322221111 1 1223446667777776 25688899999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhhCCcEEEEcCCCCHH-HHHHHHhhccccccEEEEEecCCC
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~~~~~v~vthd~~~~-~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||||++||......+ +..+....+++++||+.... .+ ...+++++...+
T Consensus 189 DEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~----------~d~v~~l~~G~i 241 (268)
T PRK14248 189 DEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRV----------SDRTAFFLNGDL 241 (268)
T ss_pred cCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHh----------CCEEEEEECCEE
Confidence 999999999865544 44443345899999997532 22 355666765443
No 233
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.2e-19 Score=168.91 Aligned_cols=164 Identities=18% Similarity=0.115 Sum_probs=110.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+. | ..|..|.+.++|.++...+.+- ......+++.+
T Consensus 23 ~is~~i~~--Ge~~~I~G~nGsGKSTLl~~i~G~~~~~---~---~~~~~G~i~~~g~~i~~~~~~~--~~~~~~i~~v~ 92 (251)
T PRK14244 23 DINLDIYK--REVTAFIGPSGCGKSTFLRCFNRMNDFV---P---NCKVKGELDIDGIDVYSVDTNV--VLLRAKVGMVF 92 (251)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcccC---C---CCCcceEEEECCEehHhcccch--HHHhhhEEEEe
Confidence 77888888 7799999999999999999999986410 0 0036899999998765332110 01123456666
Q ss_pred hhccccCC--hhhhHHHHhcCC----cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 132 QVIAVSKS--SDIVLMVLDASK----SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~----~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|....+.. .+.+.+...... .....+.+.+.++.+|+ .+++.+..||+||+||++++ ++
T Consensus 93 q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 172 (251)
T PRK14244 93 QKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLL 172 (251)
T ss_pred cCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 65433332 233332211111 11223456778888887 24677899999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~ 225 (399)
+||||++||......+++ .+....++|++||+...
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~ 210 (251)
T PRK14244 173 MDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQ 210 (251)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 999999999985554444 44333589999999764
No 234
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.81 E-value=2.3e-19 Score=169.47 Aligned_cols=146 Identities=14% Similarity=0.186 Sum_probs=100.8
Q ss_pred CcceEEEE---eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcc
Q 015822 52 GEGFEVTK---FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 128 (399)
Q Consensus 52 ~~~~~v~~---~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~ 128 (399)
++++++.. ..|++++|+|+||||||||+++|+|...+ .+|.+.++|..+.++
T Consensus 12 ~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-----------~~G~i~~~g~~i~~~-------------- 66 (246)
T cd03237 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-----------DEGDIEIELDTVSYK-------------- 66 (246)
T ss_pred cEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCceEEEe--------------
Confidence 55666653 24789999999999999999999999765 789999988644332
Q ss_pred cchhhcccc---CChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 129 RGRQVIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 129 ~~~q~~~~~---~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
.|..... .-.+.+......... ......++++.+++ .+++++..||+||+||++|| +++|||
T Consensus 67 --~q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEP 142 (246)
T cd03237 67 --PQYIKADYEGTVRDLLSSITKDFYT--HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEP 142 (246)
T ss_pred --cccccCCCCCCHHHHHHHHhhhccc--cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1111111 112222221111111 12235677888888 57888999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHH
Q 015822 195 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 226 (399)
Q Consensus 195 ts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~ 226 (399)
|++||......+ ++++.. ..++|++|||....
T Consensus 143 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 143 SAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179 (246)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999865544 444432 35899999997653
No 235
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=7.4e-20 Score=170.74 Aligned_cols=170 Identities=13% Similarity=0.097 Sum_probs=109.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|.++...+..- ....+++.
T Consensus 20 ~~isl~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~ 82 (229)
T cd03254 20 KDINFSIKP--GETVAIVGPTGAGKTTLINLLMRFYDP-----------QKGQILIDGIDIRDISRKS----LRSMIGVV 82 (229)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEeHHHcCHHH----HhhhEEEe
Confidence 377888888 779999999999999999999999765 8899999998765433211 12334555
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHc-----------CC--cccccccccchhhHhhcCce---------
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~-----------gi--~~~~~~~~LS~g~kqr~~ia--------- 188 (399)
+|....+.. .+...+...... .....+...++.+ ++ .+++.+..||+||+||+.++
T Consensus 83 ~q~~~~~~~-tv~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 83 LQDTFLFSG-TIMENIRLGRPN-ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred cCCchhhhh-HHHHHHhccCCC-CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 554333322 222222111110 0111222333332 22 34566799999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
+++||||++||......+++.+ ....+++++||+...... ...+++++...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~----------~d~i~~l~~g~ 214 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN----------ADKILVLDDGK 214 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh----------CCEEEEEeCCe
Confidence 9999999999988655544444 333489999999764331 24566666543
No 236
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.80 E-value=7.2e-20 Score=170.53 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=107.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+.. .....+++.
T Consensus 31 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~ 93 (226)
T cd03248 31 QDVSFTLHP--GEVTALVGPSGSGKSTVVALLENFYQP-----------QGGQVLLDGKPISQYEHK----YLHSKVSLV 93 (226)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCcEEEECCCchHHcCHH----HHHhhEEEE
Confidence 377888888 789999999999999999999999765 889999999876433211 112234454
Q ss_pred hhhccccCC--hhhhHHHHhcCCcHH-----HHHHHHHHHHHc--CC--cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSKS--SDIVLMVLDASKSEG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~~~~~-----~~~~i~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+.. .+.+.+......... ....+.+.++.+ |+ .+++++..||+||+||++++ ++
T Consensus 94 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (226)
T cd03248 94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI 173 (226)
T ss_pred ecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 444322211 111111111111100 111245667777 66 56788999999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHH
Q 015822 191 STLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVD 226 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~ 226 (399)
+||||++||......+.+.+. ...+++++||+....
T Consensus 174 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 212 (226)
T cd03248 174 LDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTV 212 (226)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 999999999986665555443 334899999997654
No 237
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=1.4e-19 Score=155.69 Aligned_cols=159 Identities=15% Similarity=0.152 Sum_probs=128.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccc--cccccCcccchhhcc
Q 015822 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII--EGASEGKGRGRQVIA 135 (399)
Q Consensus 58 ~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~--~~~~~~~~~~~q~~~ 135 (399)
....|+.++++||+|+|||||++.|.-.+.| .+|.+.+.|..+.+..+|+-. ...+..+|+++|...
T Consensus 24 ~~~~getlvllgpsgagkssllr~lnlle~p-----------~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~ 92 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92 (242)
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHhCC-----------CCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence 3344889999999999999999999988766 899999999888887777642 223567899999888
Q ss_pred ccCChhhhHHHHhcC------CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCC
Q 015822 136 VSKSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (399)
Q Consensus 136 ~~~~~d~il~v~d~~------~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~L 198 (399)
..+...++..++.+. ...+......++|.++.+ ..++.|-.|||||+||++|| ++.||||++|
T Consensus 93 lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaal 172 (242)
T COG4161 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCccccc
Confidence 888888877766553 234455667888888888 78899999999999999998 8889999999
Q ss_pred CHH---HHHHHHHHhhhCC-cEEEEcCCCCHHH
Q 015822 199 DEK---LCYQILHEYKIHN-AEVLFREDATVDD 227 (399)
Q Consensus 199 D~~---~v~~ll~~l~~~~-~~v~vthd~~~~~ 227 (399)
|++ .+-.+++++.--+ +-+++||+.....
T Consensus 173 dpeitaqvv~iikel~~tgitqvivthev~va~ 205 (242)
T COG4161 173 DPEITAQIVSIIKELAETGITQVIVTHEVEVAR 205 (242)
T ss_pred CHHHHHHHHHHHHHHHhcCceEEEEEeehhHHH
Confidence 998 4556666666444 8899999987654
No 238
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.80 E-value=3.2e-19 Score=185.46 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=110.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. .....++++.+
T Consensus 281 ~isl~i~~--Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~---~~~~~~i~~v~ 344 (510)
T PRK15439 281 NISLEVRA--GEILGLAGVVGAGRTELAETLYGLRPA-----------RGGRIMLNGKEINALSTA---QRLARGLVYLP 344 (510)
T ss_pred ceeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEECCCCCHH---HHHhCCcEECC
Confidence 67888887 789999999999999999999998765 789999999876533211 01123456655
Q ss_pred hhc---cccCChhhhHHHH----h---c-CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------
Q 015822 132 QVI---AVSKSSDIVLMVL----D---A-SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 132 q~~---~~~~~~d~il~v~----d---~-~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia--------- 188 (399)
|.. ..+....+...+. . . .......+.+.++|+.+|+ ..++++..||+||+||+.||
T Consensus 345 q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~l 424 (510)
T PRK15439 345 EDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQL 424 (510)
T ss_pred CChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCE
Confidence 532 1222222211111 0 0 0112233457788999998 36788999999999999998
Q ss_pred eeeccCCCCCCHHHHHHHH---HHhhh-CCcEEEEcCCCCHH
Q 015822 189 FNSTLPLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll---~~l~~-~~~~v~vthd~~~~ 226 (399)
|++||||++||......+. ..+.. ..++|++|||....
T Consensus 425 LlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i 466 (510)
T PRK15439 425 LIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEI 466 (510)
T ss_pred EEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 9999999999998655544 44433 34899999997653
No 239
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=8.6e-20 Score=167.06 Aligned_cols=194 Identities=27% Similarity=0.357 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEE
Q 015822 26 HLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH 105 (399)
Q Consensus 26 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~ 105 (399)
-..++++++++++++++...+.+..+. .+ ..+.+-.+|+|+|++|||||||+|.|++....+.+++++|+++..+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~ 84 (204)
T cd01878 7 DRRLIRERIAKLRRELEKVKKQRELQR-RR-RKRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLR 84 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-Hh-hhhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEE
Confidence 445667777777777655443322111 11 1122346999999999999999999999877778899999999999998
Q ss_pred ECCE-eecccCccccccccccCc-ccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHh
Q 015822 106 YNDT-KIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKK 183 (399)
Q Consensus 106 ~~g~-~i~~iD~~Gl~~~~~~~~-~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kq 183 (399)
+++. ++.++||||+........ .........+..+|++++++|++.+..... +
T Consensus 85 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~-~------------------------ 139 (204)
T cd01878 85 LPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQ-I------------------------ 139 (204)
T ss_pred ecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhH-H------------------------
Confidence 8775 899999999854211110 001111223456777777777765422111 0
Q ss_pred hcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH-H-c
Q 015822 184 TGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL-A-R 261 (399)
Q Consensus 184 r~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l-~-~ 261 (399)
..+.+++..+. ...+|+++|+||+|+......... . .
T Consensus 140 -----------------~~~~~~l~~~~------------------------~~~~~viiV~NK~Dl~~~~~~~~~~~~~ 178 (204)
T cd01878 140 -----------------ETVEKVLKELG------------------------AEDIPMILVLNKIDLLDDEELEERLEAG 178 (204)
T ss_pred -----------------HHHHHHHHHcC------------------------cCCCCEEEEEEccccCChHHHHHHhhcC
Confidence 01111111111 112699999999999755433212 1 2
Q ss_pred CCCEEEecchhccchHHHHHHHHHHh
Q 015822 262 QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 262 ~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
..+++++||+++.|++++.+.+.+.|
T Consensus 179 ~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 179 RPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 24589999999999999998887643
No 240
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.5e-19 Score=167.31 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=116.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||+|||||+++|+|...+... ...+|.+.++|.++.-.+. . ......++++.
T Consensus 21 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~------~~~~G~i~~~g~~~~~~~~-~-~~~~~~~i~~~ 90 (252)
T PRK14272 21 KNVNLDVQR--GTVNALIGPSGCGKTTFLRAINRMHDLTPG------ARVTGRILLDGQDIYGPRV-D-PVAMRRRVGMV 90 (252)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCCCcC------CCCceeEEECCEEcccCcc-C-HHHhhceeEEE
Confidence 378888888 779999999999999999999998754000 0137999999987642110 0 01112345666
Q ss_pred hhhccccCC---hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------e
Q 015822 131 RQVIAVSKS---SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
+|....+.. .+.+.+..... ......+.+.+.+..+++ ..++++..||+||+||++++ +
T Consensus 91 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14272 91 FQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEIL 170 (252)
T ss_pred eccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 665444443 23332222111 111223345555666654 34778899999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||||++||......+++.+ ....++|++||+.....- ....+++++...+
T Consensus 171 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~---------~~d~i~~l~~G~i 225 (252)
T PRK14272 171 LMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAAR---------VSDTTSFFLVGDL 225 (252)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 999999999998655554444 333589999999764321 2355667765443
No 241
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.8e-19 Score=167.21 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=110.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+.. ..|..|.+.++|.++...+. .. ......+++.+
T Consensus 22 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~v~~~g~~i~~~~~-~~-~~~~~~i~~~~ 91 (252)
T PRK14256 22 DVSMDFPE--NSVTAIIGPSGCGKSTVLRSINRMHDLVP------SARVTGKILLDDTDIYDRGV-DP-VSIRRRVGMVF 91 (252)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHHhcccCCC------CCCCceEEEECCEEcccccC-Ch-HHhhccEEEEe
Confidence 77888888 78999999999999999999999864100 00257999999987743211 00 01233456666
Q ss_pred hhccccCCh---hhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 132 QVIAVSKSS---DIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|....+... +.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++++ ++
T Consensus 92 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 171 (252)
T PRK14256 92 QKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVIL 171 (252)
T ss_pred cCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 654444432 3232221111 112223456777888886 24577899999999999998 99
Q ss_pred eccCCCCCCHHHHHHH---HHHhhhCCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~v~~l---l~~l~~~~~~v~vthd~~~ 225 (399)
+||||++||......+ ++.+....++|++||+...
T Consensus 172 lDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 209 (252)
T PRK14256 172 MDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ 209 (252)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH
Confidence 9999999999855544 4444434589999999754
No 242
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.80 E-value=4e-19 Score=166.10 Aligned_cols=175 Identities=21% Similarity=0.154 Sum_probs=116.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+. . .+..|.+.++|.++...+. ....+++..
T Consensus 4 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-----~--~~~~G~i~~~g~~~~~~~~------~~~~i~~~~ 68 (230)
T TIGR02770 4 DLNLSLKR--GEVLALVGESGSGKSLTCLAILGLLPPG-----L--TQTSGEILLDGRPLLPLSI------RGRHIATIM 68 (230)
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCCc-----c--CccccEEEECCEechhhhh------hhheeEEEe
Confidence 57888888 7799999999999999999999986430 0 0378999999987643211 112345555
Q ss_pred hhcc-cc-CCh---hhhHHHHhc--CCcHHHHHHHHHHHHHcCCc-----ccccccccchhhHhhcCce---------ee
Q 015822 132 QVIA-VS-KSS---DIVLMVLDA--SKSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~-~~-~~~---d~il~v~d~--~~~~~~~~~i~~~L~~~gi~-----~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|... .+ ... +.+...... .......+.+.+.|+.+++. .++.+..||+||+||++++ ++
T Consensus 69 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vll 148 (230)
T TIGR02770 69 QNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLI 148 (230)
T ss_pred cCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 5432 11 111 222221111 11122345678889999883 5788899999999999998 99
Q ss_pred eccCCCCCCHHHHH---HHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 191 STLPLTHVDEKLCY---QILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 191 ~DEpts~LD~~~v~---~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+||||++||..... +++.++.. ..+++++||+.....- ....+++++...+
T Consensus 149 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~---------~~d~i~~l~~G~i 204 (230)
T TIGR02770 149 ADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVAR---------IADEVAVMDDGRI 204 (230)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 99999999988544 44555543 3489999999764321 1345666665443
No 243
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=2.7e-19 Score=186.84 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=111.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|.. + .+|.|.++|.++...+...+. ..+..+++.+
T Consensus 304 ~isl~i~~--Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~v~ 368 (529)
T PRK15134 304 NISFTLRP--GETLGLVGESGSGKSTTGLALLRLI-N-----------SQGEIWFDGQPLHNLNRRQLL-PVRHRIQVVF 368 (529)
T ss_pred cceeEEcC--CCEEEEECCCCCCHHHHHHHHhCcC-C-----------CCcEEEECCEEccccchhhHH-HhhhceEEEE
Confidence 67888887 7899999999999999999999985 3 589999999877533221110 1123456666
Q ss_pred hhc--cccCC---hhhhHHHHhcC----CcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------ee
Q 015822 132 QVI--AVSKS---SDIVLMVLDAS----KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~--~~~~~---~d~il~v~d~~----~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|.. ..+.. .+.+.+..... ......+.+.+.|+.+++ ..++++..||+||+||++|| ++
T Consensus 369 q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 448 (529)
T PRK15134 369 QDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLII 448 (529)
T ss_pred eCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 653 12332 23332221111 122234567888999998 36889999999999999998 99
Q ss_pred eccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHH
Q 015822 191 STLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 226 (399)
Q Consensus 191 ~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~ 226 (399)
+||||++||......+ ++.+.. ..++|++|||....
T Consensus 449 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~ 489 (529)
T PRK15134 449 LDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVV 489 (529)
T ss_pred eeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 9999999999865544 444432 34899999997653
No 244
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.4e-19 Score=167.81 Aligned_cols=158 Identities=12% Similarity=0.102 Sum_probs=104.9
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. .....+++.
T Consensus 19 ~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~ 81 (234)
T cd03251 19 RDISLDIPA--GETVALVGPSGSGKSTLVNLIPRFYDV-----------DSGRILIDGHDVRDYTLA----SLRRQIGLV 81 (234)
T ss_pred eeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhccccC-----------CCCEEEECCEEhhhCCHH----HHHhhEEEe
Confidence 377888888 779999999999999999999999765 899999999876432211 112334555
Q ss_pred hhhccccCChhhhHHHHhc-CC-cHHHHH------HHHHHHHHc--CC--cccccccccchhhHhhcCce---------e
Q 015822 131 RQVIAVSKSSDIVLMVLDA-SK-SEGHRQ------ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~-~~-~~~~~~------~i~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
+|....+. ..+...+.-. .. ...... .+.+.++.+ ++ .+++++..||+||+||+.++ +
T Consensus 82 ~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 82 SQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred CCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 55433332 1222111111 11 111111 123444444 34 45677899999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHH
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVD 226 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~ 226 (399)
++||||++||......+++.+. ...+++++||+....
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 200 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTI 200 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 9999999999986555555443 334899999998653
No 245
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.2e-19 Score=167.39 Aligned_cols=164 Identities=18% Similarity=0.145 Sum_probs=109.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+. | ..|..|.+.++|.++...+. .. .....++++..
T Consensus 22 ~~sl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p---~~~~~G~v~i~g~~~~~~~~-~~-~~~~~~i~~~~ 91 (251)
T PRK14251 22 GISLDFEE--KELTALIGPSGCGKSTFLRCLNRMNDDI---E---NIKITGEIKFEGQNIYGSKM-DL-VELRKEVGMVF 91 (251)
T ss_pred eeeEEEcC--CCEEEEECCCCCCHHHHHHHHhhccccc---c---CCCcceEEEECCEEcccccc-hH-HHhhccEEEEe
Confidence 67888887 7899999999999999999999986410 0 01268999999987642110 00 11123455555
Q ss_pred hhccccC--ChhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSK--SSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~--~~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+. -.+.+.+..... ........+.+.++.+++ .+++.+..||+||+||++++ +++
T Consensus 92 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llll 171 (251)
T PRK14251 92 QQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLL 171 (251)
T ss_pred cCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 5433332 133333222211 111223456677888876 24678899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~ 225 (399)
||||++||......+++.+. ...+++++||+...
T Consensus 172 DEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~ 208 (251)
T PRK14251 172 DEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ 208 (251)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence 99999999986555544443 34589999999764
No 246
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.9e-19 Score=170.94 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=109.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|..... | ..|..|.+.++|.++...... . ...+.++++.+
T Consensus 57 ~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~---p---~~~~~G~I~~~g~~i~~~~~~-~-~~~~~~i~~v~ 126 (286)
T PRK14275 57 KVNADILS--KYVTAIIGPSGCGKSTFLRAINRMNDLI---P---SCHTTGALMFDGEDIYGKFTD-E-VLLRKKIGMVF 126 (286)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccC---C---CCCCceEEEECCEEhhhcccc-h-HHhhhcEEEEC
Confidence 67788877 7899999999999999999999974210 0 012789999999876422110 0 01233456666
Q ss_pred hhccccCC--hhhhHHHHhc--C-CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDA--S-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~--~-~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .|.+.+.... . ......+.+.+.++.+++ .+++++..||+||+||+.++ +++
T Consensus 127 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllL 206 (286)
T PRK14275 127 QKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLL 206 (286)
T ss_pred CCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65433322 2333222111 1 111223456677888775 35778899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~ 225 (399)
||||++||......+++.+. ...++|++|||...
T Consensus 207 DEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~ 243 (286)
T PRK14275 207 DEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243 (286)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 99999999986655555443 33489999999765
No 247
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.8e-19 Score=171.38 Aligned_cols=154 Identities=23% Similarity=0.169 Sum_probs=106.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++... .....+++.+
T Consensus 25 ~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~-------~~~~~i~~v~ 84 (272)
T PRK15056 25 DASFTVPG--GSIAALVGVNGSGKSTLFKALMGFVRL-----------ASGKISILGQPTRQA-------LQKNLVAYVP 84 (272)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEhHHh-------hccceEEEec
Confidence 77888887 789999999999999999999999765 899999999876310 0011234444
Q ss_pred hhccc---cC--ChhhhHHH-Hh---c--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAV---SK--SSDIVLMV-LD---A--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~---~~--~~d~il~v-~d---~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|.... .. -.+.+.+. .. . .......+.+.+.|+.+|+ ..++++..||+||+||++++ +
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 43211 00 01111110 00 0 0112234456778899998 67889999999999999988 9
Q ss_pred eeccCCCCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCH
Q 015822 190 NSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 190 i~DEpts~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~ 225 (399)
++||||++||......+ +..+.. ..+++++||+...
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~ 204 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999999855544 444443 3489999999754
No 248
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.8e-19 Score=168.74 Aligned_cols=179 Identities=17% Similarity=0.157 Sum_probs=118.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+|||||||||++|+|...+... .|..|.+.++|.++...+.+ . .....++++.+
T Consensus 38 ~vsl~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v~ 107 (267)
T PRK14237 38 GIDMQFEK--NKITALIGPSGSGKSTYLRSLNRMNDTIDI------ARVTGQILYRGIDINRKEIN-V-YEMRKHIGMVF 107 (267)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhccCccCC------CCcceEEEECCEEcccccCC-h-HHHhcceEEEe
Confidence 67888887 789999999999999999999998743100 13789999999877421110 0 11233456666
Q ss_pred hhccccCC--hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+..... ........+.+.|+.+++ .+++++..||+||+||++++ +++
T Consensus 108 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 187 (267)
T PRK14237 108 QRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLM 187 (267)
T ss_pred cCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65433321 23333222111 111223456777888876 35788999999999999988 999
Q ss_pred ccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHH-HHHHHHhhccccccEEEEEecCCC
Q 015822 192 TLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~-~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||||++||......+++.+ ....++|++||+.... ++ ...+++++...+
T Consensus 188 DEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~----------~d~i~~l~~G~i 240 (267)
T PRK14237 188 DEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARA----------SDYTAFFYLGDL 240 (267)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh----------cCEEEEEECCEE
Confidence 9999999998655554444 3335899999997642 32 356677775543
No 249
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.80 E-value=4.3e-19 Score=184.18 Aligned_cols=160 Identities=11% Similarity=0.164 Sum_probs=111.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+|||||||||++|+|...| |.+|.+.++|.++.-.. + .......+++.+
T Consensus 278 ~is~~i~~--Ge~~~l~G~NGsGKSTLl~~l~G~~~p----------~~~G~i~~~g~~~~~~~-~--~~~~~~~i~~v~ 342 (500)
T TIGR02633 278 DVSFSLRR--GEILGVAGLVGAGRTELVQALFGAYPG----------KFEGNVFINGKPVDIRN-P--AQAIRAGIAMVP 342 (500)
T ss_pred cceeEEeC--CcEEEEeCCCCCCHHHHHHHHhCCCCC----------CCCeEEEECCEECCCCC-H--HHHHhCCCEEcC
Confidence 67888888 779999999999999999999999752 26899999998763211 0 011233456666
Q ss_pred hhc---cccCC---hhhhHHH-HhcC------CcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce-------
Q 015822 132 QVI---AVSKS---SDIVLMV-LDAS------KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (399)
Q Consensus 132 q~~---~~~~~---~d~il~v-~d~~------~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------- 188 (399)
|.. ..+.. .+.+.+. .... ......+.+.++|+.+++ ..++++..||+||+||+.||
T Consensus 343 q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p 422 (500)
T TIGR02633 343 EDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNP 422 (500)
T ss_pred cchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCC
Confidence 653 12222 2222221 1100 112234567889999998 25788999999999999998
Q ss_pred --eeeccCCCCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCHH
Q 015822 189 --FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~~ 226 (399)
+++||||++||...... ++..+.. ..++|++|||....
T Consensus 423 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~ 466 (500)
T TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEV 466 (500)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 99999999999986554 4555543 34899999997643
No 250
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.80 E-value=1.8e-19 Score=167.69 Aligned_cols=148 Identities=15% Similarity=0.082 Sum_probs=102.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhcc
Q 015822 56 EVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA 135 (399)
Q Consensus 56 ~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~ 135 (399)
++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.. ....+++.+|...
T Consensus 2 ~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~---------~~~~i~~v~q~~~ 59 (223)
T TIGR03771 2 SADK--GELLGLLGPNGAGKTTLLRAILGLIPP-----------AKGTVKVAGASPGK---------GWRHIGYVPQRHE 59 (223)
T ss_pred ccCC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCccchH---------hhCcEEEeccccc
Confidence 3445 789999999999999999999998765 88999999976421 1123444444322
Q ss_pred ccC-----ChhhhHHHHh----cC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeecc
Q 015822 136 VSK-----SSDIVLMVLD----AS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 136 ~~~-----~~d~il~v~d----~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
... -.+.+.+... .. ......+.+.+.++.+++ ..++.+..||+||+||++++ +++||
T Consensus 60 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE 139 (223)
T TIGR03771 60 FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDE 139 (223)
T ss_pred ccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 211 1222221110 00 112234567888999998 56788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hh-CCcEEEEcCCCCH
Q 015822 194 PLTHVDEKLCYQILHEY---KI-HNAEVLFREDATV 225 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~-~~~~v~vthd~~~ 225 (399)
||++||......+++.+ .. ..+++++||+...
T Consensus 140 P~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~ 175 (223)
T TIGR03771 140 PFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQ 175 (223)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999998655544444 33 3489999999763
No 251
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.9e-19 Score=168.45 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=109.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+..+ -+..|.+.++|.++...+.. . ......+++.+
T Consensus 30 ~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v~ 99 (259)
T PRK14274 30 NINLSIPE--NEVTAIIGPSGCGKSTFIKTLNLMIQMVPN------VKLTGEMNYNGSNILKGKVD-L-VELRKNIGMVF 99 (259)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhccCCCC------CCCceEEEECCEEccccccC-H-HHHhhceEEEe
Confidence 77888887 789999999999999999999998642000 01479999999887421111 0 11123456666
Q ss_pred hhccccCC--hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+..... ........+.+.++.+++ .+++.+..||+||+||++++ +++
T Consensus 100 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llll 179 (259)
T PRK14274 100 QKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLM 179 (259)
T ss_pred cCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65443332 22222221111 112223446677888776 25788899999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhhCCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~~~~~v~vthd~~~ 225 (399)
||||++||......+ +.++....+++++||+...
T Consensus 180 DEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 216 (259)
T PRK14274 180 DEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQ 216 (259)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 999999999855544 4444334589999999754
No 252
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7.2e-19 Score=166.50 Aligned_cols=181 Identities=18% Similarity=0.105 Sum_probs=116.8
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|..... |. .+..|.+.++|.++.-.+.. . ......+++.
T Consensus 22 ~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~---~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v 91 (252)
T PRK14239 22 NSVSLDFYP--NEITALIGPSGSGKSTLLRSINRMNDLN---PE---VTITGSIVYNGHNIYSPRTD-T-VDLRKEIGMV 91 (252)
T ss_pred eeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhcccccC---CC---CCccceEEECCEECcCcccc-h-HhhhhcEEEE
Confidence 377888888 7899999999999999999999974210 00 01479999999876421110 0 0112345565
Q ss_pred hhhccccC--ChhhhHHHHhcC--C-cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSK--SSDIVLMVLDAS--K-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~--~~d~il~v~d~~--~-~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+. -.+.+.+..... . .......+.+.++.+++ ..++.+..||+||+||++++ ++
T Consensus 92 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 171 (252)
T PRK14239 92 FQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIIL 171 (252)
T ss_pred ecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55543332 133333222111 1 11223456677888875 35788899999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 191 STLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+||||++||......+.+.+ ....+++++||+..... .....++++++.-+
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~---------~~~d~i~~l~~G~i 225 (252)
T PRK14239 172 LDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQAS---------RISDRTGFFLDGDL 225 (252)
T ss_pred EcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHH---------HhCCEEEEEECCEE
Confidence 99999999998655554444 33358999999975422 12356677765543
No 253
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.80 E-value=5.5e-19 Score=166.81 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=106.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|.+.+ |+.++|+|+||||||||+++|+|.... .|..|.+.++|.++.-.+.... ...++++.
T Consensus 18 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------~~~~G~i~~~g~~~~~~~~~~~---~~~~i~~~ 83 (248)
T PRK09580 18 RGLNLEVRP--GEVHAIMGPNGSGKSTLSATLAGREDY---------EVTGGTVEFKGKDLLELSPEDR---AGEGIFMA 83 (248)
T ss_pred ecceeEEcC--CCEEEEECCCCCCHHHHHHHHcCCccC---------CCCceEEEECCCccccCCHHHH---hhcceEEE
Confidence 377888888 779999999999999999999998420 1378999999987643331111 11234444
Q ss_pred hhhccccCChhhhHH---HHhc---C------CcHHHHHHHHHHHHHcCC---ccccccc-ccchhhHhhcCce------
Q 015822 131 RQVIAVSKSSDIVLM---VLDA---S------KSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------ 188 (399)
Q Consensus 131 ~q~~~~~~~~d~il~---v~d~---~------~~~~~~~~i~~~L~~~gi---~~~~~~~-~LS~g~kqr~~ia------ 188 (399)
.|....+.......+ +... . ......+.+.+.++.+++ ..++.+. .||+||+||+.++
T Consensus 84 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (248)
T PRK09580 84 FQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 163 (248)
T ss_pred ecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 444322222121111 1110 0 011123456677788887 2455554 7999999999998
Q ss_pred ---eeeccCCCCCCHHHHHHHHH---Hhhh-CCcEEEEcCCCCHH
Q 015822 189 ---FNSTLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 189 ---li~DEpts~LD~~~v~~ll~---~l~~-~~~~v~vthd~~~~ 226 (399)
+++||||++||......+.+ .+.. ..++|++|||....
T Consensus 164 p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 164 PELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999999999986555554 4443 35899999996643
No 254
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.80 E-value=4.5e-19 Score=167.89 Aligned_cols=162 Identities=19% Similarity=0.124 Sum_probs=108.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+|+||||||||+++|+|... ..|..|.+.++|.++..++..- ....++++.+
T Consensus 25 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~---~~~~~~~~~~ 90 (252)
T CHL00131 25 GLNLSINK--GEIHAIMGPNGSGKSTLSKVIAGHPA---------YKILEGDILFKGESILDLEPEE---RAHLGIFLAF 90 (252)
T ss_pred cceeEEcC--CcEEEEECCCCCCHHHHHHHHcCCCc---------CcCCCceEEECCEEcccCChhh---hheeeEEEEe
Confidence 77888888 78999999999999999999999731 0237999999998775443110 0111234444
Q ss_pred hhccccCChhhhHH---HHhc---C------CcHHHHHHHHHHHHHcCC---ccccccc-ccchhhHhhcCce-------
Q 015822 132 QVIAVSKSSDIVLM---VLDA---S------KSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------- 188 (399)
Q Consensus 132 q~~~~~~~~d~il~---v~d~---~------~~~~~~~~i~~~L~~~gi---~~~~~~~-~LS~g~kqr~~ia------- 188 (399)
|....++..+...+ .... . ......+.+.+.|+.+++ .+++.+. .||+||+||+.++
T Consensus 91 q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 170 (252)
T CHL00131 91 QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDS 170 (252)
T ss_pred ccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCC
Confidence 44333333222211 1110 0 011123456778888888 2567776 5999999999998
Q ss_pred --eeeccCCCCCCHHHHHHHHHHh---hh-CCcEEEEcCCCCHHH
Q 015822 189 --FNSTLPLTHVDEKLCYQILHEY---KI-HNAEVLFREDATVDD 227 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~ll~~l---~~-~~~~v~vthd~~~~~ 227 (399)
+++||||++||......+.+.+ .. ..++|++||+.....
T Consensus 171 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~ 215 (252)
T CHL00131 171 ELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLD 215 (252)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 9999999999998665555444 33 348999999976543
No 255
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.80 E-value=6.2e-19 Score=168.99 Aligned_cols=178 Identities=14% Similarity=0.128 Sum_probs=114.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-ccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAA-SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs-~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
+++|++.+ |++++|+|+|||||||||++|+|...+.. .... ...|.+.++|.++.-.+...+ ...+++.
T Consensus 19 ~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~----~~~G~i~~~g~~~~~~~~~~~----~~~~~~v 88 (272)
T PRK13547 19 DLSLRIEP--GRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA----RVTGDVTLNGEPLAAIDAPRL----ARLRAVL 88 (272)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCCccccccc----CCceEEEECCEEcccCCHHHH----HhhcEEe
Confidence 77888888 77999999999999999999999875410 0000 028999999988754332211 1123444
Q ss_pred hhhccccCC---hhhhHHHHhcC------CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce-----------
Q 015822 131 RQVIAVSKS---SDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----------- 188 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~------~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia----------- 188 (399)
+|....+.. .+.+.+..... ......+.+.+.|+.+++ .+++++..||+||+||++++
T Consensus 89 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~ 168 (272)
T PRK13547 89 PQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHD 168 (272)
T ss_pred cccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccc
Confidence 443221112 22222211100 012234557788999998 57888999999999999874
Q ss_pred -------eeeccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 189 -------FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 189 -------li~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
+++||||++||......+ +..+.. ..++|++||+..... .....+++++..
T Consensus 169 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~---------~~~d~i~~l~~G 231 (272)
T PRK13547 169 AAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA---------RHADRIAMLADG 231 (272)
T ss_pred cCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH---------HhCCEEEEEECC
Confidence 678999999999855554 444443 348999999976432 123556666654
No 256
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.4e-19 Score=171.94 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=111.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+.. ..|..|.+.++|.++...+... ......+++.+
T Consensus 57 ~is~~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~------~~p~~G~I~i~G~~i~~~~~~~--~~~~~~i~~v~ 126 (285)
T PRK14254 57 DVSMDIPE--NQVTAMIGPSGCGKSTFLRCINRMNDLID------AARVEGELTFRGKNVYDADVDP--VALRRRIGMVF 126 (285)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCccc------CCCCceEEEECCEEccccccch--HhhhccEEEEe
Confidence 77888887 78999999999999999999999874200 0137899999998764221100 11123455666
Q ss_pred hhccccCC--hhhhHHHHhcCC-cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eeecc
Q 015822 132 QVIAVSKS--SDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~-~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
|....+.. .+.+.+...... +....+.+.+.++.+++ .+++++..||+||+||++|+ +++||
T Consensus 127 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDE 206 (285)
T PRK14254 127 QKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE 206 (285)
T ss_pred cCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 65433332 233322221111 11234467788888876 35788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCH
Q 015822 194 PLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~ 225 (399)
||++||......+.+.+ ....++|++||+...
T Consensus 207 Pts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~ 241 (285)
T PRK14254 207 PASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQ 241 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999998655554444 334589999999765
No 257
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.6e-19 Score=168.39 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=117.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+.+.. |..|.+.++|.++.-...+ ......+++.+
T Consensus 39 ~vs~~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~~~~~---~~~~~~i~~v~ 107 (276)
T PRK14271 39 QVSMGFPA--RAVTSLMGPTGSGKTTFLRTLNRMNDKVSGY------RYSGDVLLGGRSIFNYRDV---LEFRRRVGMLF 107 (276)
T ss_pred eeEEEEcC--CcEEEEECCCCCCHHHHHHHHhccCCcCCCC------CCceEEEECCEEccccchh---HHHhhheEEec
Confidence 77888887 7899999999999999999999987542111 3689999999876422110 11123455555
Q ss_pred hhccccC--ChhhhHHHHhcC---CcHHHHHHHHHHHHHcCCc------ccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSK--SSDIVLMVLDAS---KSEGHRQILTKELEAVGLR------LNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~--~~d~il~v~d~~---~~~~~~~~i~~~L~~~gi~------~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+. -.+.+.+..... ........+.+.++.+++. +++.+..||+||+||++|+ +++
T Consensus 108 q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllL 187 (276)
T PRK14271 108 QRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLL 187 (276)
T ss_pred cCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5443332 122222221111 1112223456678888872 4677899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 192 TLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||||++||......+++ .+....++|++||+..... .....+++++..-+
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~---------~~~dri~~l~~G~i 240 (276)
T PRK14271 188 DEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAA---------RISDRAALFFDGRL 240 (276)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH---------HhCCEEEEEECCEE
Confidence 99999999986555444 4433458999999976422 12356677775443
No 258
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.80 E-value=2.9e-19 Score=184.96 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=106.7
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|.++...+... ....+++.
T Consensus 20 ~~vsl~i~~--Ge~~~liG~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~~~~~~~~~~----~~~~i~~~ 82 (490)
T PRK10938 20 QLPSLTLNA--GDSWAFVGANGSGKSALARALAGELPL-----------LSGERQSQFSHITRLSFEQ----LQKLVSDE 82 (490)
T ss_pred ccceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCceEEECCcccccCCHHH----HHHHhcee
Confidence 378888888 789999999999999999999998765 8899999886653222110 11123333
Q ss_pred hhhccc--cCCh-hh-hHHHHhcC-CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAV--SKSS-DI-VLMVLDAS-KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~--~~~~-d~-il~v~d~~-~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|.... +... .. -+.+.+.. ......+++.+.|+.+|+ ..++++..||+||+||++|| +++|||
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 332110 0000 00 00111110 011234567888999999 57899999999999999998 999999
Q ss_pred CCCCCHHHHHHHH---HHhhhC-CcEEEEcCCCCH
Q 015822 195 LTHVDEKLCYQIL---HEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 195 ts~LD~~~v~~ll---~~l~~~-~~~v~vthd~~~ 225 (399)
|++||+.....++ ..+... .++|++|||...
T Consensus 163 t~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~ 197 (490)
T PRK10938 163 FDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE 197 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 9999998655544 444433 489999999754
No 259
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.80 E-value=6.7e-19 Score=168.42 Aligned_cols=161 Identities=21% Similarity=0.228 Sum_probs=112.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+..-. ......+++.
T Consensus 29 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~sG~i~~~g~~~~~~~~~~~-~~~~~~i~~v 94 (268)
T PRK10419 29 NNVSLSLKS--GETVALLGRSGCGKSTLARLLVGLESP-----------SQGNVSWRGEPLAKLNRAQR-KAFRRDIQMV 94 (268)
T ss_pred eceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccChhHH-HHHHhcEEEE
Confidence 378888888 779999999999999999999998755 89999999987654332100 0112345555
Q ss_pred hhhcc--ccCC---hhhhHHHHhc---CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIA--VSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~--~~~~---~d~il~v~d~---~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|... .... .+.+.+.... .........+.+.|+.+|+ ..++.+..||+||+||++++ ++
T Consensus 95 ~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 95 FQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred EcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEE
Confidence 55431 1111 2222221111 1122334467888999988 35788999999999999998 99
Q ss_pred eccCCCCCCHHH---HHHHHHHhhh--CCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKL---CYQILHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~---v~~ll~~l~~--~~~~v~vthd~~~ 225 (399)
+||||++||... +.++++++.. ..++|++||+...
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~ 214 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL 214 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH
Confidence 999999999984 4455555543 3489999999754
No 260
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.4e-19 Score=168.57 Aligned_cols=164 Identities=20% Similarity=0.155 Sum_probs=108.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+- |. .+..|.+.++|.++...+.+ . ...+..+++.+
T Consensus 21 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~~---~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~~~ 90 (250)
T PRK14240 21 KINLDIEE--NQVTALIGPSGCGKSTFLRTLNRMNDLI---PS---VKIEGEVLLDGQDIYKSDID-V-NQLRKRVGMVF 90 (250)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccc---CC---CCCceEEEECCEEccccccc-h-HHHhccEEEEe
Confidence 77888888 7899999999999999999999975320 00 12589999999876421110 0 01123455555
Q ss_pred hhccccC--ChhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSK--SSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~--~~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+. -.+.+.+..... ......+.+.+.++.+++ ..++++..||+||+||++++ +++
T Consensus 91 q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 170 (250)
T PRK14240 91 QQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLM 170 (250)
T ss_pred cCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5443332 122232221111 111234556777888775 24778899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~ 225 (399)
||||++||......+++ .+....+++++||+...
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 207 (250)
T PRK14240 171 DEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQ 207 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 99999999986555444 44333589999999753
No 261
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.80 E-value=4.1e-19 Score=172.15 Aligned_cols=192 Identities=19% Similarity=0.215 Sum_probs=139.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CCccccceeeeeceEEEECCEeecccCccccccccccCccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~-vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~ 129 (399)
.+++|++.. |+++||||.+|||||-..+++++..+. .+.+ -+|.+.|+|.++.-.....+..-....+++
T Consensus 27 k~isf~i~~--GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~-------~sg~i~f~G~dll~~se~~lr~iRG~~I~M 97 (534)
T COG4172 27 KGISFDIEA--GETLALVGESGSGKSVTALSILGLLPSPAAAH-------PSGSILFDGEDLLAASERQLRGVRGNKIGM 97 (534)
T ss_pred ccceeeecC--CCEEEEEecCCCCccHHHHHHHHhcCCCcccC-------ccceeEEcChhhhcCCHHHHhhhcccceEE
Confidence 388999999 789999999999999999999998753 2222 478999999987665544444333345666
Q ss_pred chhhccc-cCChhh----hHHHH---hcCCcHHHHHHHHHHHHHcCC-----cccccccccchhhHhhcCce--------
Q 015822 130 GRQVIAV-SKSSDI----VLMVL---DASKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 130 ~~q~~~~-~~~~d~----il~v~---d~~~~~~~~~~i~~~L~~~gi-----~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
.+|.... +...-. +..++ ..........++.++|+.+|| +++.+|++|||||+||+.||
T Consensus 98 IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~ 177 (534)
T COG4172 98 IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPD 177 (534)
T ss_pred EecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCC
Confidence 6665421 111111 11111 122334556788999999999 78999999999999999998
Q ss_pred -eeeccCCCCCCHH---HHHHHHHHhh--hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH
Q 015822 189 -FNSTLPLTHVDEK---LCYQILHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (399)
Q Consensus 189 -li~DEpts~LD~~---~v~~ll~~l~--~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~ 260 (399)
+++||||++||.. .+.++|+.++ ..-++++||||+++..- ....++|+.+..++.....+.+.
T Consensus 178 lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~---------~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRK---------FADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred eEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHH---------hhhhEEEEeccEEeecCcHHHHh
Confidence 9999999999987 5666666666 34499999999987542 24678999999887555444444
No 262
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.80 E-value=7.7e-19 Score=166.67 Aligned_cols=159 Identities=18% Similarity=0.096 Sum_probs=109.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+.. .+..|.+.++|.++...+ .....+++.+
T Consensus 21 ~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~G~i~~~g~~i~~~~------~~~~~i~~v~ 85 (254)
T PRK10418 21 GVSLTLQR--GRVLALVGGSGSGKSLTCAAALGILPAGV-------RQTAGRVLLDGKPVAPCA------LRGRKIATIM 85 (254)
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCCCC-------CCcCCEEEECCeeccccc------cccceEEEEe
Confidence 67888887 77999999999999999999999864310 126899999998774211 1123455555
Q ss_pred hhcc-ccCC-h---hhhHHHHhcCCcHHHHHHHHHHHHHcCC-c----ccccccccchhhHhhcCce---------eeec
Q 015822 132 QVIA-VSKS-S---DIVLMVLDASKSEGHRQILTKELEAVGL-R----LNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 132 q~~~-~~~~-~---d~il~v~d~~~~~~~~~~i~~~L~~~gi-~----~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
|... .+.. . +.+.............+.+.+.|+.+++ . +++.+..||+||+||+.|+ +++|
T Consensus 86 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD 165 (254)
T PRK10418 86 QNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD 165 (254)
T ss_pred cCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5432 1211 1 1121111111111233567888999998 2 5788999999999999998 9999
Q ss_pred cCCCCCCHHHH---HHHHHHhhh--CCcEEEEcCCCCH
Q 015822 193 LPLTHVDEKLC---YQILHEYKI--HNAEVLFREDATV 225 (399)
Q Consensus 193 Epts~LD~~~v---~~ll~~l~~--~~~~v~vthd~~~ 225 (399)
|||++||.... .++++.+.. ..+++++||+...
T Consensus 166 EPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~ 203 (254)
T PRK10418 166 EPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV 203 (254)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 99999998854 445555532 3489999999765
No 263
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.7e-19 Score=185.11 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=104.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.. |++++|+|+||||||||+++|+|...+ .+|.|.++|.. .+++.+
T Consensus 337 ~is~~i~~--Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~---------------~i~~~~ 388 (530)
T PRK15064 337 NLNLLLEA--GERLAIIGENGVGKTTLLRTLVGELEP-----------DSGTVKWSENA---------------NIGYYA 388 (530)
T ss_pred CcEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCce---------------EEEEEc
Confidence 67777777 789999999999999999999998765 78999987631 112222
Q ss_pred hhcc-cc-CChhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIA-VS-KSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~-~~-~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|... .+ ....+...+..........+.+.+.|+.+++ ..++++..||+||+||+++| +++||||++
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~ 468 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 2211 01 1111111111000111123457788999988 46889999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhh-hCCcEEEEcCCCCHH
Q 015822 198 VDEKLCYQILHEYK-IHNAEVLFREDATVD 226 (399)
Q Consensus 198 LD~~~v~~ll~~l~-~~~~~v~vthd~~~~ 226 (399)
||......+.+.+. +.+++|++|||....
T Consensus 469 LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 469 MDMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 99997777776665 456999999997643
No 264
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=5.4e-20 Score=181.98 Aligned_cols=211 Identities=25% Similarity=0.302 Sum_probs=140.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCccc--chhhccccC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR--GRQVIAVSK 138 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~--~~q~~~~~~ 138 (399)
|..++|+|+||+|||||+|+|+..+ +.|++.||||||...-.+.++|.++.+.||+|+++.....+.. +.+....++
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~ 347 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIE 347 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHh
Confidence 5799999999999999999999998 5799999999999999999999999999999998732222111 123334567
Q ss_pred ChhhhHHHHhcCCcHHH-HHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEE
Q 015822 139 SSDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (399)
Q Consensus 139 ~~d~il~v~d~~~~~~~-~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v 217 (399)
.+|++++|+|+...... ...+.+.|+..+. ..+
T Consensus 348 ~advi~~vvda~~~~t~sd~~i~~~l~~~~~----------------------------------------------g~~ 381 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTESDLKIARILETEGV----------------------------------------------GLV 381 (531)
T ss_pred hcCEEEEEecccccccccchHHHHHHHHhcc----------------------------------------------ceE
Confidence 89999999988332111 1111222222111 111
Q ss_pred EEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh-hhHHH-----HH-----cCCCEEEecchhccchHHHHHHHHHH
Q 015822 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DDVDK-----LA-----RQPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 218 ~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-~~~~~-----l~-----~~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
.+..-| ...|.++++||+|+.++ .+... +. .++.++.+||.+++|++.|.+++.+.
T Consensus 382 ~~~~~~-------------~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 382 VIVNKM-------------EKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred EEeccc-------------cccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence 111111 23799999999999855 22111 11 12334559999999999999999887
Q ss_pred hCceEEEeCCCCCCCCCCCcEEeecCCCCCCHHHHHH--HHHHHHhhccceeEEe
Q 015822 287 MGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFCN--HIHRSLVKDVKYVLVW 339 (399)
Q Consensus 287 l~~i~~~~~~~~~~p~~~~~~~v~~~r~g~tv~~~a~--~ih~~l~~~f~~a~~w 339 (399)
+....+ +....++++...|+..-+...+. ..|..+.+.|+--++.
T Consensus 449 ~~~~~~--------~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~l 495 (531)
T KOG1191|consen 449 VERLVV--------SPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDL 495 (531)
T ss_pred HHHhhc--------CCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhh
Confidence 764322 22344666665566655554444 6777788877766653
No 265
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.79 E-value=4.8e-19 Score=167.52 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=107.7
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|.. + ..|.+.++|.++.-.+...+ ...+++.
T Consensus 13 ~~vsl~i~~--Gei~~l~G~nGsGKSTLl~~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v 74 (248)
T PRK03695 13 GPLSAEVRA--GEILHLVGPNGAGKSTLLARMAGLL-P-----------GSGSIQFAGQPLEAWSAAEL----ARHRAYL 74 (248)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHcCCC-C-----------CCeEEEECCEecCcCCHHHH----hhheEEe
Confidence 367888888 7899999999999999999999985 2 47999999987653332111 1224555
Q ss_pred hhhccccCC---hhhhHHHHhc-CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce----------------
Q 015822 131 RQVIAVSKS---SDIVLMVLDA-SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------- 188 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~-~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------------- 188 (399)
+|....+.. .+.+.+.... .......+.+.++++.+++ .+++.+..||+||+||+.++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l 154 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL 154 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE
Confidence 554322222 2222221111 1122234567888999998 56888999999999998743
Q ss_pred eeeccCCCCCCHHHHHHH---HHHhhhC-CcEEEEcCCCCH
Q 015822 189 FNSTLPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 189 li~DEpts~LD~~~v~~l---l~~l~~~-~~~v~vthd~~~ 225 (399)
+++||||++||......+ +..+... .++|++||+...
T Consensus 155 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~ 195 (248)
T PRK03695 155 LLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH 195 (248)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 578999999999855444 4444433 489999999763
No 266
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=4.4e-19 Score=157.03 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=146.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC-EeecccCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
++||++.+ |+.-+|||||||||||++.+|+|...| ..|.+.++| .++.-++.. .-++.|+|+-
T Consensus 23 ~ls~~v~~--Gelr~lIGpNGAGKTT~mD~ItGKtrp-----------~~G~v~f~g~~dl~~~~e~---~IAr~GIGRK 86 (249)
T COG4674 23 DLSFSVDP--GELRVLIGPNGAGKTTLMDVITGKTRP-----------QEGEVLFDGDTDLTKLPEH---RIARAGIGRK 86 (249)
T ss_pred eeEEEecC--CeEEEEECCCCCCceeeeeeecccCCC-----------CcceEEEcCchhhccCCHH---HHHHhccCcc
Confidence 67777777 789999999999999999999998766 899999988 666655543 2457889998
Q ss_pred hhhccccCChhh---hHHHHh----------cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce-------
Q 015822 131 RQVIAVSKSSDI---VLMVLD----------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (399)
Q Consensus 131 ~q~~~~~~~~d~---il~v~d----------~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia------- 188 (399)
+|....+++..+ +.+-+. .....++..++++.|+..|+ ..+.....||-||||++.|+
T Consensus 87 FQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P 166 (249)
T COG4674 87 FQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDP 166 (249)
T ss_pred ccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCC
Confidence 888877766433 322221 11234456689999999998 67788899999999999887
Q ss_pred --eeeccCCCCCCHH---HHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHcCC
Q 015822 189 --FNSTLPLTHVDEK---LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 263 (399)
Q Consensus 189 --li~DEpts~LD~~---~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~~~ 263 (399)
+++|||++++..+ ...++++.+.-..++++|.||+....- ....+.|++..-...+..++.+...+
T Consensus 167 ~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~---------~A~~VTVlh~G~VL~EGsld~v~~dp 237 (249)
T COG4674 167 KLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVRE---------IADKVTVLHEGSVLAEGSLDEVQNDP 237 (249)
T ss_pred cEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHH---------hhheeEEEeccceeecccHHHhhcCc
Confidence 8889999999876 456677777777799999999875432 23567888888777777777777666
Q ss_pred CEEE
Q 015822 264 NSVV 267 (399)
Q Consensus 264 ~~i~ 267 (399)
.++.
T Consensus 238 ~ViE 241 (249)
T COG4674 238 KVIE 241 (249)
T ss_pred ceEe
Confidence 6543
No 267
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=165.22 Aligned_cols=165 Identities=18% Similarity=0.102 Sum_probs=110.6
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+.. ..|.+|.+.++|.++...+ +.. ......+++.
T Consensus 21 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~------~~~~~G~i~~~g~~i~~~~-~~~-~~~~~~i~~~ 90 (251)
T PRK14270 21 NDINLPIYE--NKITALIGPSGCGKSTFLRCLNRMNDLIS------NVKIEGEVLLDGKNIYDKD-VDV-VELRKRVGMV 90 (251)
T ss_pred eceeEEEcC--CCEEEEECCCCCCHHHHHHHHHhccCccc------CCCCccEEEECCEeccccc-ccH-HHHHhheEEE
Confidence 377888887 78999999999999999999999864310 0126799999998774311 111 0112345666
Q ss_pred hhhccccC--ChhhhHHHHhcCC---cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSK--SSDIVLMVLDASK---SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~--~~d~il~v~d~~~---~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+. -.+.+.+...... .......+.+.++.+++ ..++++..||+||+||++++ ++
T Consensus 91 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 170 (251)
T PRK14270 91 FQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVIL 170 (251)
T ss_pred ecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 65543332 1233332211111 11223456677888876 25778899999999999988 99
Q ss_pred eccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~ 225 (399)
+||||++||......+++ .+....++|++||+...
T Consensus 171 lDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~ 208 (251)
T PRK14270 171 MDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQ 208 (251)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHH
Confidence 999999999986555444 44334689999999754
No 268
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=4.1e-19 Score=161.66 Aligned_cols=158 Identities=22% Similarity=0.212 Sum_probs=118.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+|||||||||++|+|...+ .+|.|.++|.++.-..+ ...++.|+++++
T Consensus 21 gvsl~v~~--Geiv~llG~NGaGKTTlLkti~Gl~~~-----------~~G~I~~~G~dit~~p~---~~r~r~Gi~~VP 84 (237)
T COG0410 21 GVSLEVER--GEIVALLGRNGAGKTTLLKTIMGLVRP-----------RSGRIIFDGEDITGLPP---HERARLGIAYVP 84 (237)
T ss_pred eeeeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCeecCCCCH---HHHHhCCeEeCc
Confidence 78888888 779999999999999999999999765 78999999999876532 234567888888
Q ss_pred hhccccCChhhhHHHH---hcCCc-HHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMVL---DASKS-EGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v~---d~~~~-~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|-...|+...+-..+. ..... ......+++.++.|-. +.+++...|||||+|.++|+ +++|||+
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs 164 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164 (237)
T ss_pred ccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 8777777755443332 22221 1111125666676643 67888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHhh---hC-C-cEEEEcCCCCH
Q 015822 196 THVDEKLCYQILHEYK---IH-N-AEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll~~l~---~~-~-~~v~vthd~~~ 225 (399)
.+|-+..+.++++.+. .. + |+++|.++...
T Consensus 165 ~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~ 199 (237)
T COG0410 165 EGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF 199 (237)
T ss_pred cCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH
Confidence 9999986666655554 22 4 88888777554
No 269
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.79 E-value=3.5e-19 Score=165.07 Aligned_cols=159 Identities=13% Similarity=0.123 Sum_probs=104.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+|||||||||++|+|...+ .+|.+.++|.++...+..-.....+.++++.
T Consensus 18 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 84 (218)
T cd03290 18 SNINIRIPT--GQLTMIVGQVGCGKSSLLLAILGEMQT-----------LEGKVHWSNKNESEPSFEATRSRNRYSVAYA 84 (218)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCcccccccccccchhhcceEEEE
Confidence 377888888 779999999999999999999999755 7899999998765332110001112345565
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia--------- 188 (399)
+|....+ ...+.-.+..... . ........++.+++ .++.++..||+||+||++|+
T Consensus 85 ~q~~~~~-~~t~~~nl~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 85 AQKPWLL-NATVEENITFGSP-F-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred cCCCccc-cccHHHHHhhcCc-C-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 6654333 2222211111111 0 01122334444443 13457889999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHH-----Hhhh-CCcEEEEcCCCCH
Q 015822 189 FNSTLPLTHVDEKLCYQILH-----EYKI-HNAEVLFREDATV 225 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~-----~l~~-~~~~v~vthd~~~ 225 (399)
+++||||++||......+++ .+.. ..+++++||+...
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 99999999999986665544 4432 3589999999764
No 270
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=5.3e-19 Score=184.33 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=109.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC-CEeeccc-Ccc-ccccccccCcc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLL-DLP-GIIEGASEGKG 128 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i~~i-D~~-Gl~~~~~~~~~ 128 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ .+|.+.++ |.+..-+ +.. .-.......++
T Consensus 302 ~is~~i~~--Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~ 368 (520)
T TIGR03269 302 NVSLEVKE--GEIFGIVGTSGAGKTTLSKIIAGVLEP-----------TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIG 368 (520)
T ss_pred eEEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEEecCCccccccccchhhHHHHhhhEE
Confidence 67777877 789999999999999999999999765 78999995 5332111 100 00001123456
Q ss_pred cchhhccccCChhhhHHH---Hhc-CCcHHHHHHHHHHHHHcCCc-------ccccccccchhhHhhcCce---------
Q 015822 129 RGRQVIAVSKSSDIVLMV---LDA-SKSEGHRQILTKELEAVGLR-------LNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 129 ~~~q~~~~~~~~d~il~v---~d~-~~~~~~~~~i~~~L~~~gi~-------~~~~~~~LS~g~kqr~~ia--------- 188 (399)
+.+|....+....+...+ ... .......+.+.++|+.+++. +++++..||+||+||++||
T Consensus 369 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~l 448 (520)
T TIGR03269 369 ILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRI 448 (520)
T ss_pred EEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 666654433333332222 111 11122335677889999982 5788999999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHHHh---hh--CCcEEEEcCCCCHH
Q 015822 189 FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATVD 226 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l---~~--~~~~v~vthd~~~~ 226 (399)
+++||||++||+.....+++.+ .. ..++|++|||....
T Consensus 449 LllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~ 491 (520)
T TIGR03269 449 VILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV 491 (520)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH
Confidence 9999999999998665555554 32 34899999997653
No 271
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.2e-18 Score=164.92 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=117.4
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+.+. .+..|.+.++|.++...+. . ....+..+++.
T Consensus 21 ~~~s~~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~v~~~g~~~~~~~~-~-~~~~~~~i~~v 90 (251)
T PRK14249 21 KNINMDFPE--RQITAIIGPSGCGKSTLLRALNRMNDIVSG------ARLEGAVLLDNENIYSPNL-D-VVNLRKRVGMV 90 (251)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCcccc------CCcccEEEECCEEcccccc-C-hHHhhceEEEE
Confidence 377888888 779999999999999999999998765211 1247999999987632110 0 01123446666
Q ss_pred hhhccccCC--hhhhHHHHhcC--C-cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSKS--SDIVLMVLDAS--K-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~--~-~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+.. .+.+.+..... . .....+.+...+..+++ .+++.+..||+||+||++++ ++
T Consensus 91 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 170 (251)
T PRK14249 91 FQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVIL 170 (251)
T ss_pred ecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 665544432 22232221111 1 11122445666777765 35788999999999999998 99
Q ss_pred eccCCCCCCHHHHH---HHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 191 STLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 191 ~DEpts~LD~~~v~---~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+||||++||..... +++..+....++|++||+.....- ....+++++...+
T Consensus 171 LDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~---------~~d~i~~l~~G~i 224 (251)
T PRK14249 171 MDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAAR---------ASDWTGFLLTGDL 224 (251)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh---------hCCEEEEEeCCeE
Confidence 99999999988554 445554333589999999765331 1245666665433
No 272
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.79 E-value=2.5e-19 Score=168.06 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=104.3
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+.. .....+++.
T Consensus 19 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~ 81 (237)
T cd03252 19 DNISLRIKP--GEVVGIVGRSGSGKSTLTKLIQRFYVP-----------ENGRVLVDGHDLALADPA----WLRRQVGVV 81 (237)
T ss_pred eceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCeehHhcCHH----HHhhcEEEE
Confidence 377888887 779999999999999999999999765 789999999876533221 112335555
Q ss_pred hhhccccCChhhhHHHHhc-CC-cHHHH------HHHHHHHHHc--CC--cccccccccchhhHhhcCce---------e
Q 015822 131 RQVIAVSKSSDIVLMVLDA-SK-SEGHR------QILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~-~~-~~~~~------~~i~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
+|....+. ..+...+.-. .. ..... ..+.+.+..+ ++ .+++++..||+||+||++++ +
T Consensus 82 ~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 82 LQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred cCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 55433322 2222111110 00 11110 0122333433 33 35678899999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHH
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVD 226 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~ 226 (399)
++||||++||......+++.+. ...+++++||+....
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~ 200 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV 200 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 9999999999986665555543 334899999998653
No 273
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=4.7e-19 Score=190.52 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=124.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|++|||||||+++|+|...| .+|.|.++|.++.-+|...+ +..+++..
T Consensus 471 ~isl~i~~--Ge~vaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~i~~v~ 533 (686)
T TIGR03797 471 DVSLQIEP--GEFVAIVGPSGSGKSTLLRLLLGFETP-----------ESGSVFYDGQDLAGLDVQAV----RRQLGVVL 533 (686)
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcCcCCHHHH----HhccEEEc
Confidence 66777777 789999999999999999999999865 89999999999988875443 34577777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--c-----------ccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~-----------~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+ + .+ ...+.+.+.++..++ . +...-..|||||+||+++|
T Consensus 534 Q~~~lf~gTI~eNi~~---~-~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 534 QNGRLMSGSIFENIAG---G-AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred cCCccCcccHHHHHhc---C-CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 87666554 333332 1 11 223445666666655 1 2233467999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh-hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~-~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+++||||++||.+.-..+++.+. ...|++++||+..... ..+.|+|+++.-+.
T Consensus 609 iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~----------~~D~Iivl~~G~iv 663 (686)
T TIGR03797 609 ILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIR----------NADRIYVLDAGRVV 663 (686)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHH----------cCCEEEEEECCEEE
Confidence 99999999999997777777776 4469999999975543 24677888765443
No 274
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.79 E-value=5.3e-19 Score=187.91 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=124.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++++++++ |++|||||+||||||||++.|+|...| ..|.|.++|.++..+|...++ +.+|++.
T Consensus 491 ~isL~I~~--Ge~vaIvG~SGsGKSTL~KLL~gly~p-----------~~G~I~~dg~dl~~i~~~~lR----~~ig~V~ 553 (709)
T COG2274 491 DLSLEIPP--GEKVAIVGRSGSGKSTLLKLLLGLYKP-----------QQGRILLDGVDLNDIDLASLR----RQVGYVL 553 (709)
T ss_pred ceeEEeCC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEeHHhcCHHHHH----hheeEEc
Confidence 66777777 789999999999999999999999876 999999999999999876554 4567766
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|.+.+ ..+....+.+.+.+...|+ .+...-..||||||||++||
T Consensus 554 Q~~~Lf~gSI~eNi~l----~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 554 QDPFLFSGSIRENIAL----GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629 (709)
T ss_pred ccchhhcCcHHHHHhc----CCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC
Confidence 65544332 222221 1222222334444444433 34455678999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~ 253 (399)
+++|||||+||.+.-+.+.+.+. ...|+++++|....-. ....|+|+.+.-++..
T Consensus 630 ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~----------~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 630 ILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR----------SADRIIVLDQGKIVEQ 688 (709)
T ss_pred EEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh----------hccEEEEccCCceecc
Confidence 99999999999987666666665 3469999999987655 3467888887655533
No 275
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=7.4e-19 Score=183.25 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=109.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCccccceeeeeceEEEECC---------------------
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYND--------------------- 108 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g--------------------- 108 (399)
+++|++.. |++++|+|+||||||||+++|+|.. .+ ..|.|.++|
T Consensus 18 ~is~~i~~--Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-----------~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (520)
T TIGR03269 18 NISFTIEE--GEVLGILGRSGAGKSVLMHVLRGMDQYEP-----------TSGRIIYHVALCEKCGYVERPSKVGEPCPV 84 (520)
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhhcccCCC-----------CceEEEEecccccccccccccccccccccc
Confidence 77888888 7799999999999999999999985 34 789988862
Q ss_pred --Eeecc--cCcccc----ccccccCcccchhh-ccccCC---hhhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccc
Q 015822 109 --TKIQL--LDLPGI----IEGASEGKGRGRQV-IAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNK 172 (399)
Q Consensus 109 --~~i~~--iD~~Gl----~~~~~~~~~~~~q~-~~~~~~---~d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~ 172 (399)
.++.. .|.... ....+..+++.+|. ...+.. .+.+.+.... .......+++.+.|+.+|+ ..++
T Consensus 85 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 164 (520)
T TIGR03269 85 CGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH 164 (520)
T ss_pred ccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc
Confidence 11110 111000 00112345666664 223332 3344332221 1122234567889999999 5688
Q ss_pred cccccchhhHhhcCce---------eeeccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHH
Q 015822 173 RPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 226 (399)
Q Consensus 173 ~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~ 226 (399)
++.+||+||+||++|| +++||||++||+.....+ ++.+.. ..++|++|||....
T Consensus 165 ~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 165 IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 8999999999999998 999999999999866555 455432 34899999997653
No 276
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.79 E-value=2.4e-19 Score=183.13 Aligned_cols=187 Identities=26% Similarity=0.253 Sum_probs=130.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCccccccccccCccc-chhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~-~~q~~~~~~~ 139 (399)
+.+|+|+|+||||||||+|+|++... .++++||||+++....+.++|.++.++||||+......-... ....+..+.+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEE 294 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999874 689999999999999999999999999999986321100000 1123345678
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|++.+....+. .++.
T Consensus 295 aD~il~VvD~s~~~s~~~~----------------------------------------------~~l~----------- 317 (449)
T PRK05291 295 ADLVLLVLDASEPLTEEDD----------------------------------------------EILE----------- 317 (449)
T ss_pred CCEEEEEecCCCCCChhHH----------------------------------------------HHHH-----------
Confidence 9999999988654321100 0000
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHcCCCEEEecchhccchHHHHHHHHHHhCceEEEeCCCCC
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQ 299 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~~~~~~ 299 (399)
. ...+|.++|+||+|+....... .....+++++||+++.|+++|.+.+.+.+... +.
T Consensus 318 -----------~----~~~~piiiV~NK~DL~~~~~~~-~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~~--~~----- 374 (449)
T PRK05291 318 -----------E----LKDKPVIVVLNKADLTGEIDLE-EENGKPVIRISAKTGEGIDELREAIKELAFGG--FG----- 374 (449)
T ss_pred -----------h----cCCCCcEEEEEhhhccccchhh-hccCCceEEEEeeCCCCHHHHHHHHHHHHhhc--cc-----
Confidence 0 1136999999999997543332 11234589999999999999999998876421 00
Q ss_pred CCCCCCcEEeecCCCCCCHHHHHHHHHHHHh
Q 015822 300 QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLV 330 (399)
Q Consensus 300 ~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~ 330 (399)
...... ++...||...++.+.+.+...+.
T Consensus 375 -~~~~~~-~~~~~R~~~~l~~a~~~l~~~~~ 403 (449)
T PRK05291 375 -GNQEGV-FLTNARHLEALERALEHLERALE 403 (449)
T ss_pred -cccccc-eehHHHHHHHHHHHHHHHHHHHH
Confidence 012223 44556899999988888876543
No 277
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.5e-18 Score=165.33 Aligned_cols=164 Identities=14% Similarity=0.077 Sum_probs=109.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |++++|+|+||||||||+++|+|...+...+ |.+|.+.++|.++...+.. . ......+++.+
T Consensus 26 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v~ 95 (261)
T PRK14263 26 DSHVPIRK--NEITGFIGPSGCGKSTVLRSLNRMNDLVKGF------RFEGHVHFLGQDVYGKGVD-P-VVVRRYIGMVF 95 (261)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHcccccccCC------CCceEEEECCEeccccccc-h-HhhhhceEEEe
Confidence 77888888 7899999999999999999999997542221 2689999999876422111 0 01123455555
Q ss_pred hhccccC--ChhhhHHHHhcCC-cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eeecc
Q 015822 132 QVIAVSK--SSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 132 q~~~~~~--~~d~il~v~d~~~-~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
|....+. ..+.+.+...... .......+.+.|+.+++ ..++++..||+||+||++++ +++||
T Consensus 96 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (261)
T PRK14263 96 QQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE 175 (261)
T ss_pred cCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5443321 1233322211111 11223467788888886 23467789999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCH
Q 015822 194 PLTHVDEKLCYQILHEYK---IHNAEVLFREDATV 225 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~ 225 (399)
||++||......+++.+. ...+++++||+...
T Consensus 176 PtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~ 210 (261)
T PRK14263 176 PCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210 (261)
T ss_pred CCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 999999986555554443 33489999999764
No 278
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.7e-19 Score=167.51 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCcccc-ccccccCcccchhhccccCChh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI-IEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl-~~~~~~~~~~~~q~~~~~~~~d 141 (399)
...||.|++|||||||+|+++|...| ..|.|.++|..+.-.+ .|+ .+...+.+||++|....|++..
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rP-----------deG~I~lngr~L~Ds~-k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRP-----------DEGRIELNGRVLVDAE-KGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCc-----------cccEEEECCEEeeccc-CCcccChhhheeeeEeeccccccceE
Confidence 49999999999999999999999766 9999999998764222 233 2334567899999888888765
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCHHH---HHHHH
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL---CYQIL 207 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~---v~~ll 207 (399)
+--.+..+.... ......+....+|| .++++|..||||||||++|+ +++|||+++||... +...+
T Consensus 93 VrgNL~YG~~~~-~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpyl 171 (352)
T COG4148 93 VRGNLRYGMWKS-MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171 (352)
T ss_pred Eecchhhhhccc-chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHH
Confidence 433322221111 23345667778899 89999999999999999998 89999999999874 44455
Q ss_pred HHhh--hCCcEEEEcCCCC
Q 015822 208 HEYK--IHNAEVLFREDAT 224 (399)
Q Consensus 208 ~~l~--~~~~~v~vthd~~ 224 (399)
+.+. ..-.+++|||.+.
T Consensus 172 ERL~~e~~IPIlYVSHS~~ 190 (352)
T COG4148 172 ERLRDEINIPILYVSHSLD 190 (352)
T ss_pred HHHHHhcCCCEEEEecCHH
Confidence 5554 2337899999754
No 279
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=3.3e-19 Score=165.43 Aligned_cols=155 Identities=16% Similarity=0.109 Sum_probs=105.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+... ....+++.
T Consensus 21 ~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~ 83 (221)
T cd03244 21 KNISFSIKP--GEKVGIVGRTGSGKSSLLLALFRLVEL-----------SSGSILIDGVDISKIGLHD----LRSRISII 83 (221)
T ss_pred cceEEEECC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCCEEEECCEEhHhCCHHH----HhhhEEEE
Confidence 377888888 779999999999999999999999765 8899999998765332111 12345555
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia--------- 188 (399)
+|....+.. .+...+ ..... ...+.+.+.++.+++ .+++.+..||+||+||++++
T Consensus 84 ~q~~~l~~~-tv~enl-~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 84 PQDPVLFSG-TIRSNL-DPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred CCCCccccc-hHHHHh-CcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 554433321 221111 11111 112234444555554 22467899999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCH
Q 015822 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV 225 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~ 225 (399)
+++||||++||......+++.+. ...+++++||+...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 200 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDT 200 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 99999999999986655555443 33589999999754
No 280
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.5e-18 Score=164.50 Aligned_cols=179 Identities=17% Similarity=0.106 Sum_probs=116.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+..+ .+..|.+.++|.++.....+ . ......+++.+
T Consensus 24 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~~~ 93 (253)
T PRK14261 24 DITISIPK--NRVTALIGPSGCGKSTLLRCFNRMNDLIPG------CRITGDILYNGENIMDSGAD-V-VALRRKIGMVF 93 (253)
T ss_pred eeEEEECC--CcEEEEECCCCCCHHHHHHHHhccccCCCC------CCcceEEEECCEEccccccc-h-hhhhceEEEEe
Confidence 77888887 789999999999999999999998532000 12479999999887533111 0 11223456666
Q ss_pred hhccccCC--hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+..... ........+.+.++.+++ .+++.+..||+||+||+.++ +++
T Consensus 94 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 173 (253)
T PRK14261 94 QRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILM 173 (253)
T ss_pred cCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65433322 22222211111 111223456677777765 35788899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 192 TLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
||||++||......+.+ .+....++|++||+..... .....++++++..
T Consensus 174 DEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~---------~~~d~v~~l~~G~ 225 (253)
T PRK14261 174 DEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAA---------RVSDYTGFMYLGK 225 (253)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHH---------hhCCEEEEEECCE
Confidence 99999999986555544 4433459999999976432 1134566666543
No 281
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=4e-19 Score=175.38 Aligned_cols=156 Identities=31% Similarity=0.389 Sum_probs=109.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccc-cCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-EGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~-~~~~~~~q~~~~~~~~d 141 (399)
+|+|+|.||||||||+|.|+|.. +.+++.|+||++...|.+.++|.++.++||||+..... .+..+.......+..+|
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aD 133 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSAD 133 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCC
Confidence 89999999999999999999987 45789999999999999999999999999999854221 11112223334467899
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|+........ ..++..+.
T Consensus 134 vil~VvD~~~s~~~~~----------------------------------------------~~il~~l~---------- 157 (339)
T PRK15494 134 LVLLIIDSLKSFDDIT----------------------------------------------HNILDKLR---------- 157 (339)
T ss_pred EEEEEEECCCCCCHHH----------------------------------------------HHHHHHHH----------
Confidence 9988888654321110 00111110
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh--hHHH-HHcC---CCEEEecchhccchHHHHHHHHHHhCc
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDK-LARQ---PNSVVISCNLKLNLDRLLARMWEEMGL 289 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~--~~~~-l~~~---~~~i~vSa~~~~gl~~L~~~i~~~l~~ 289 (399)
. ...|.++|+||+|+.... ++.. +... ..++++||++|.|+++|.+.+.+.+..
T Consensus 158 ------------~--~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 158 ------------S--LNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred ------------h--cCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 0 124778899999986431 1212 2211 358999999999999999999887753
No 282
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=2.1e-19 Score=170.58 Aligned_cols=158 Identities=27% Similarity=0.379 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCc-ccchhhccccCC-h
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKS-S 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~-~~~~q~~~~~~~-~ 140 (399)
.+|.|.|+||+|||||+++||+..+.|++|||||....-|.+..++..+|.+||||+.+..-... ..-.|....+++ .
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~ 248 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLA 248 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999975332111 111222222222 3
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
++|++++|.+ ++.+...+....++++++.
T Consensus 249 ~~IlF~~D~S-------------------------------------------e~cgy~lE~Q~~L~~eIk~-------- 277 (346)
T COG1084 249 GVILFLFDPS-------------------------------------------ETCGYSLEEQISLLEEIKE-------- 277 (346)
T ss_pred CeEEEEEcCc-------------------------------------------cccCCCHHHHHHHHHHHHH--------
Confidence 3344444443 3445555555555555441
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHc------CCCEEEecchhccchHHHHHHHHHH
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR------QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~------~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
....|+++|+||+|+...+.++++.. ....+.+|+..+.+++.+.+.+...
T Consensus 278 ---------------~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 278 ---------------LFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ---------------hcCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 11269999999999987776655431 1235678888999999888777654
No 283
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=7.6e-19 Score=185.77 Aligned_cols=168 Identities=15% Similarity=0.202 Sum_probs=120.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+++ |+++||+|++|||||||++.|+|.. | .+|.|.++|.++.-++...+ +..++++.
T Consensus 368 ~i~l~i~~--G~~vaIvG~SGsGKSTL~~lL~g~~-p-----------~~G~I~i~g~~i~~~~~~~l----r~~i~~v~ 429 (588)
T PRK11174 368 PLNFTLPA--GQRIALVGPSGAGKTSLLNALLGFL-P-----------YQGSLKINGIELRELDPESW----RKHLSWVG 429 (588)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCC-C-----------CCcEEEECCEecccCCHHHH----HhheEEec
Confidence 56677777 7899999999999999999999997 6 78999999999887775443 34577778
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+- . +....+.+.+.++..++ .+...-..|||||+||++||
T Consensus 430 Q~~~LF~~TI~eNI~~g---~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~ 505 (588)
T PRK11174 430 QNPQLPHGTLRDNVLLG---N-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ 505 (588)
T ss_pred CCCcCCCcCHHHHhhcC---C-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 87666554 3444332 1 11122334444444332 33444568999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+++|||||+||.+.-..+++.+. ...|++++||+...... .+.|+++++.-+.
T Consensus 506 IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~----------aD~Iivl~~G~i~ 562 (588)
T PRK11174 506 LLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----------WDQIWVMQDGQIV 562 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh----------CCEEEEEeCCeEe
Confidence 99999999999997666666554 34599999999855432 4667787765443
No 284
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.79 E-value=2.5e-19 Score=158.83 Aligned_cols=162 Identities=35% Similarity=0.537 Sum_probs=111.1
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC-CEeecccCccccccccccCcccchhhccccCChhhhHH
Q 015822 67 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLM 145 (399)
Q Consensus 67 lvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~ 145 (399)
|+|+||||||||+|+|++....++++|+||++|..|.+.++ +.++.++||||+.........+..++...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999988778999999999999999998 99999999999865433333333455556778999999
Q ss_pred HHhcCCcH-----HHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 146 VLDASKSE-----GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 146 v~d~~~~~-----~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
++|+.... ...+........ +....
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~------ 110 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAE--------------------------------------------LKLYD------ 110 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHH--------------------------------------------HHHhh------
Confidence 99987542 111111111110 00000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH----H---cCCCEEEecchhccchHHHHHHHHHH
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL----A---RQPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l----~---~~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
...+ ......+|.++|+||+|+......... . ....++++||+++.|+++|.+.+...
T Consensus 111 ----~~~~----~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 111 ----LETI----LGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ----hhhH----HHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 0000 000124799999999999865443321 1 22458999999999999999888654
No 285
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.79 E-value=8.3e-19 Score=175.36 Aligned_cols=195 Identities=19% Similarity=0.196 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHhhhhc---hhHHHHHHHHHHHHHHHhhh-hcCCCCC----------CCC--------CCcc------
Q 015822 3 IIEKIKEIEAEMARTQKN---KATEYHLGQLKAKIAKLRTQ-LLEPPKG----------SSG--------AGEG------ 54 (399)
Q Consensus 3 ~~~~i~~le~~i~~~~~~---k~t~~~~~~l~~~l~~l~~~-~~~~~~~----------~~~--------~~~~------ 54 (399)
-|++|..++++|+++-.. -+.+++. ..+.++++..+ +.+.... .+. ++++
T Consensus 325 qqk~i~~~K~~ia~~g~g~a~~~rka~s--~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~ 402 (614)
T KOG0927|consen 325 QQKQIAHMKDLIARFGHGSAKLGRKAQS--KEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDN 402 (614)
T ss_pred HHhHHHHhhHHHHhhcccchhhhHHHhh--hhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEEeccccCCCCc
Confidence 478899999999996553 2222233 23556666543 2111100 000 1333
Q ss_pred --------eEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccC
Q 015822 55 --------FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 126 (399)
Q Consensus 55 --------~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~ 126 (399)
|.+.. +.+|++||||||||||||+.++|...| +.|++.-.-.. .
T Consensus 403 ~~iy~~l~fgid~--~srvAlVGPNG~GKsTLlKl~~gdl~p-----------~~G~vs~~~H~---------------~ 454 (614)
T KOG0927|consen 403 PMIYKKLNFGIDL--DSRVALVGPNGAGKSTLLKLITGDLQP-----------TIGMVSRHSHN---------------K 454 (614)
T ss_pred chhhhhhhcccCc--ccceeEecCCCCchhhhHHHHhhcccc-----------ccccccccccc---------------c
Confidence 44555 679999999999999999999999765 78887542111 1
Q ss_pred cccchhhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeec
Q 015822 127 KGRGRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 127 ~~~~~q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
.++.+|.....-. ...+.++++...+....+.+..+|.++|+ ....+..+||.||+.|+.++ |++|
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec
Confidence 1223343322222 33456677776655567789999999999 46678899999999999988 9999
Q ss_pred cCCCCCCHHHHHHHHHHhh-hCCcEEEEcCCCCHHH
Q 015822 193 LPLTHVDEKLCYQILHEYK-IHNAEVLFREDATVDD 227 (399)
Q Consensus 193 Epts~LD~~~v~~ll~~l~-~~~~~v~vthd~~~~~ 227 (399)
|||+|||.+.+..+-+.+. +.+++|++|||..+.+
T Consensus 535 EPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~ 570 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLIS 570 (614)
T ss_pred CCCcCCCchhHHHHHHHHhccCCceeeeechhhHHH
Confidence 9999999999999999888 7889999999987643
No 286
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.6e-18 Score=165.19 Aligned_cols=178 Identities=13% Similarity=0.142 Sum_probs=115.4
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+|||||||||++|+|...+.+.+ +..|.+.++|.++..... .. ......+++.
T Consensus 24 ~~is~~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i------~~~G~i~~~g~~i~~~~~-~~-~~~~~~i~~~ 93 (261)
T PRK14258 24 EGVSMEIYQ--SKVTAIIGPSGCGKSTFLKCLNRMNELESEV------RVEGRVEFFNQNIYERRV-NL-NRLRRQVSMV 93 (261)
T ss_pred eceEEEEcC--CcEEEEECCCCCCHHHHHHHHhcccCCCCCc------cccceEEECCEEhhcccc-ch-HHhhccEEEE
Confidence 378888888 7899999999999999999999997642111 147899999987632111 00 0112334554
Q ss_pred hhhccccC--ChhhhHHHHhc--CCcH-HHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSK--SSDIVLMVLDA--SKSE-GHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~--~~d~il~v~d~--~~~~-~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+. -.+.+.+.... ..+. .....+.+.|+.+++ ..++++..||+||+||+.++ ++
T Consensus 94 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vll 173 (261)
T PRK14258 94 HPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLL 173 (261)
T ss_pred ecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55433332 12222221111 1121 223456778888876 35778899999999999998 99
Q ss_pred eccCCCCCCHHHHHHHH---HHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEec
Q 015822 191 STLPLTHVDEKLCYQIL---HEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 247 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll---~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK 247 (399)
+||||++||......++ .++.. ..+++++||+..... .....+++++.
T Consensus 174 LDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~---------~~~d~i~~l~~ 226 (261)
T PRK14258 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVS---------RLSDFTAFFKG 226 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH---------HhcCEEEEEcc
Confidence 99999999998655544 44432 358999999976432 12355666665
No 287
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.4e-19 Score=166.70 Aligned_cols=164 Identities=19% Similarity=0.149 Sum_probs=109.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+... .|.+|.+.++|.++...+. .. ......+++.+
T Consensus 21 ~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~------~~~~G~i~i~g~~~~~~~~-~~-~~~~~~i~~~~ 90 (250)
T PRK14262 21 NVTMKIFK--NQITAIIGPSGCGKTTLLRSINRMNDHIPG------FRVEGKIYFKGQDIYDPQL-DV-TEYRKKVGMVF 90 (250)
T ss_pred eeeEeecC--CCEEEEECCCCCCHHHHHHHHhccccCCCC------CCcceEEEECCEEcccchh-hH-HHhhhhEEEEe
Confidence 77888888 789999999999999999999998643100 1268999999987643110 00 11123455555
Q ss_pred hhccccC--ChhhhHHHHhcC--Cc-HHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSK--SSDIVLMVLDAS--KS-EGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~--~~d~il~v~d~~--~~-~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+. -.+.+.+..... .. ....+.+.+.++.+++ ..++++..||+||+||+.++ +++
T Consensus 91 q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llll 170 (250)
T PRK14262 91 QKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILL 170 (250)
T ss_pred cCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEE
Confidence 5433222 123332222211 11 1223446677788776 25778899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~ 225 (399)
||||++||......+.+ .+....+++++||+...
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~ 207 (250)
T PRK14262 171 DEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQ 207 (250)
T ss_pred eCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 99999999986555444 44333589999999763
No 288
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.79 E-value=4e-19 Score=166.84 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=108.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+.. .....+++.
T Consensus 20 ~~i~~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~ 82 (238)
T cd03249 20 KGLSLTIPP--GKTVALVGSSGCGKSTVVSLLERFYDP-----------TSGEILLDGVDIRDLNLR----WLRSQIGLV 82 (238)
T ss_pred eceEEEecC--CCEEEEEeCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEehhhcCHH----HHHhhEEEE
Confidence 377888888 779999999999999999999999765 899999999876432211 112234555
Q ss_pred hhhccccCChhhhHHHHhc-C-CcHHHHH------HHHHHHHHc--CC--cccccccccchhhHhhcCce---------e
Q 015822 131 RQVIAVSKSSDIVLMVLDA-S-KSEGHRQ------ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~-~-~~~~~~~------~i~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
+|....+. ..+...+... . ....... .+.+.+..+ ++ .+++.+..||+||+||+.++ +
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 161 (238)
T cd03249 83 SQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKIL 161 (238)
T ss_pred CCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 54432222 1221111111 0 1111111 112222222 22 35667899999999999988 9
Q ss_pred eeccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 190 NSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
++||||++||......+.+ .+....+++++||+...... ...+++++...
T Consensus 162 llDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~----------~d~v~~l~~G~ 214 (238)
T cd03249 162 LLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRN----------ADLIAVLQNGQ 214 (238)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh----------CCEEEEEECCE
Confidence 9999999999986555444 44422389999999765432 34566666543
No 289
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.8e-18 Score=163.86 Aligned_cols=165 Identities=16% Similarity=0.105 Sum_probs=108.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|..... | -.+.+|.|.++|.++...+. .. ......+++.
T Consensus 22 ~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i~~~ 91 (252)
T PRK14255 22 KGIDLDFNQ--NEITALIGPSGCGKSTYLRTLNRMNDLI---P---GVTITGNVSLRGQNIYAPNE-DV-VQLRKQVGMV 91 (252)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccC---C---CCCcccEEEEcCEEcccccc-cH-HHhcCeEEEE
Confidence 377888888 7899999999999999999999975310 0 00247999999987642111 00 1112345565
Q ss_pred hhhccccCC--hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSKS--SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+.. .+.+.+..... ......+.+.+.++.+++ ..++.+..||+||+||++++ ++
T Consensus 92 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 171 (252)
T PRK14255 92 FQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVIL 171 (252)
T ss_pred ECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 555433321 23333222111 111112345566677664 35678899999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~ 225 (399)
+||||++||......+++.+ ....++|++||+...
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 209 (252)
T PRK14255 172 LDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ 209 (252)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence 99999999998655554444 334589999999754
No 290
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.79 E-value=8.1e-19 Score=185.34 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=121.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++++ |+++||+|++|||||||+++|+|...| ..|.+.++|.++.-+|...+ ...+++.+
T Consensus 361 ~i~l~i~~--G~~~aIvG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~g~~i~~~~~~~~----~~~i~~v~ 423 (582)
T PRK11176 361 NINFKIPA--GKTVALVGRSGSGKSTIANLLTRFYDI-----------DEGEILLDGHDLRDYTLASL----RNQVALVS 423 (582)
T ss_pred CceEEeCC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCceEEECCEEhhhcCHHHH----HhhceEEc
Confidence 66777777 779999999999999999999999765 89999999999877765432 34467777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+--.+.-+..+..+.+.+.+.++..++ .+...-..|||||+||+++| +
T Consensus 424 Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~il 502 (582)
T PRK11176 424 QNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_pred cCceeecc-hHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEE
Confidence 77655543 2222222211111123345555555553 22333467999999999999 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||.+....+++.+. ...++++|||+...... ...|+++++..+.
T Consensus 503 ilDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~----------~D~Ii~l~~g~i~ 557 (582)
T PRK11176 503 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK----------ADEILVVEDGEIV 557 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh----------CCEEEEEECCEEE
Confidence 9999999999987776666664 23599999999865432 4667788765443
No 291
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.3e-18 Score=166.81 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=107.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+.. ..|.+|.+.++|.++...+.. .......+++.+
T Consensus 42 ~vsl~i~~--Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~------~~~~~G~i~~~g~~~~~~~~~--~~~~~~~i~~v~ 111 (271)
T PRK14238 42 NINLDIHE--NEVTAIIGPSGCGKSTYIKTLNRMVELVP------SVKTTGKILYRDQNIFDKSYS--VEELRTNVGMVF 111 (271)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhccCCC------CCCCceeEEECCEEccccccc--HHHHhhhEEEEe
Confidence 67888887 78999999999999999999999864100 013789999999876421111 011123455555
Q ss_pred hhccccCC--hhhhHHHHhcC--CcH-HHHHHHHHHHHHcC----C--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDAS--KSE-GHRQILTKELEAVG----L--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~--~~~-~~~~~i~~~L~~~g----i--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+..... ... .....+.+.++.++ + .+++++..||+||+||++++ +++
T Consensus 112 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllL 191 (271)
T PRK14238 112 QKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILM 191 (271)
T ss_pred cCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 55433321 23332221111 111 12234556666654 3 45778899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~ 225 (399)
||||++||......+.+.+ ....++|++||+...
T Consensus 192 DEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 228 (271)
T PRK14238 192 DEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ 228 (271)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH
Confidence 9999999998655555444 334589999999764
No 292
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=8.5e-19 Score=184.12 Aligned_cols=146 Identities=15% Similarity=0.159 Sum_probs=102.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE-eecccCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
+++|+|.. |++++|+|+|||||||||++|+|...+ ..|.+.+++. .+ ++.
T Consensus 25 ~vs~~i~~--Ge~~~iiG~NGsGKSTLlk~i~G~~~p-----------~~G~i~~~~~~~i----------------~~v 75 (556)
T PRK11819 25 DISLSFFP--GAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FEGEARPAPGIKV----------------GYL 75 (556)
T ss_pred CceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEE----------------EEE
Confidence 78888888 779999999999999999999999765 7899887531 22 222
Q ss_pred hhhccccCC---hhhhHHHHh----------------c-C---------------------CcHHHHHHHHHHHHHcCC-
Q 015822 131 RQVIAVSKS---SDIVLMVLD----------------A-S---------------------KSEGHRQILTKELEAVGL- 168 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d----------------~-~---------------------~~~~~~~~i~~~L~~~gi- 168 (399)
+|....+.. .+.+.+... . . .......++...|+.+|+
T Consensus 76 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 155 (556)
T PRK11819 76 PQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP 155 (556)
T ss_pred ecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC
Confidence 222111111 122211000 0 0 000113456778888888
Q ss_pred cccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHHHHHhh-hCCcEEEEcCCCCHH
Q 015822 169 RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFREDATVD 226 (399)
Q Consensus 169 ~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~ll~~l~-~~~~~v~vthd~~~~ 226 (399)
..++++..||+||+||+.|+ +++||||++||+.....+.+.+. +.+++|++|||....
T Consensus 156 ~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~ 223 (556)
T PRK11819 156 PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFL 223 (556)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 56888999999999999998 99999999999997776666665 346999999998654
No 293
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.6e-18 Score=163.90 Aligned_cols=164 Identities=18% Similarity=0.105 Sum_probs=109.5
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+... .|.+|.+.++|.++.....+ .....++++.
T Consensus 20 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~v~~~g~~~~~~~~~---~~~~~~i~~~ 88 (249)
T PRK14253 20 KSINLPIPA--RQVTALIGPSGCGKSTLLRCLNRMNDLIEG------VKITGKLTMDGEDIYGNIDV---ADLRIKVGMV 88 (249)
T ss_pred ecceEEecC--CCEEEEECCCCCCHHHHHHHHHhhcccccC------CCCceEEEECCEEcccccch---HHHHhheeEE
Confidence 378888888 779999999999999999999998653100 03589999999876421111 1122345666
Q ss_pred hhhccccC--ChhhhHHHHhcCC--c-HHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSK--SSDIVLMVLDASK--S-EGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~--~~d~il~v~d~~~--~-~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+. -.+.+.+...... . ....+.+.+.++.+++ .+++++..||+||+||+.|+ ++
T Consensus 89 ~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 168 (249)
T PRK14253 89 FQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVIL 168 (249)
T ss_pred ecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 55543332 1233332221111 1 1123345666777765 35678899999999999998 99
Q ss_pred eccCCCCCCHHHHHH---HHHHhhhCCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~v~~---ll~~l~~~~~~v~vthd~~~ 225 (399)
+||||++||...... +++.+....++|++||+...
T Consensus 169 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 206 (249)
T PRK14253 169 MDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQ 206 (249)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 999999999985544 44444434589999999754
No 294
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.3e-18 Score=166.87 Aligned_cols=176 Identities=14% Similarity=0.124 Sum_probs=114.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+... .|..|.+.++|.++...+.. . .....++++.+
T Consensus 38 ~vs~~i~~--Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~l~~~~~~-~-~~~~~~i~~v~ 107 (274)
T PRK14265 38 DVHLKIPA--KKIIAFIGPSGCGKSTLLRCFNRMNDLIPG------AKVEGRLLYRDRNIYDSQIN-S-VKLRRQVGMVF 107 (274)
T ss_pred eeeeEEcC--CCEEEEECCCCCCHHHHHHHHhcccccccC------CCcCceEEECCEecccccch-h-HHHhhcEEEEc
Confidence 77888888 789999999999999999999998642000 02589999999876421111 0 01233456666
Q ss_pred hhccccCC--hhhhHHHHhcCC-cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eeecc
Q 015822 132 QVIAVSKS--SDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~-~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
|....+.. .+.+.+...... .....+.+.+.++.+++ .+++++..||+||+||++++ +++||
T Consensus 108 q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE 187 (274)
T PRK14265 108 QRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE 187 (274)
T ss_pred cCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 65433322 222222111111 11122345666777765 35678899999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEe
Q 015822 194 PLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYN 246 (399)
Q Consensus 194 pts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~N 246 (399)
||++||......+++.+ ....+++++|||...... ....+++++
T Consensus 188 Pt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~---------~~d~i~~l~ 234 (274)
T PRK14265 188 PCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASR---------VADWTAFFN 234 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEe
Confidence 99999998655554444 333589999999764321 235677776
No 295
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=4.1e-19 Score=166.45 Aligned_cols=159 Identities=15% Similarity=0.137 Sum_probs=104.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+... .+..+++.
T Consensus 18 ~~i~~~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~v~~~g~~~~~~~~~~----~~~~i~~~ 80 (236)
T cd03253 18 KDVSFTIPA--GKKVAIVGPSGSGKSTILRLLFRFYDV-----------SSGSILIDGQDIREVTLDS----LRRAIGVV 80 (236)
T ss_pred eeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCEEEECCEEhhhCCHHH----HHhhEEEE
Confidence 367888888 779999999999999999999999765 8999999998775443221 12334555
Q ss_pred hhhccccCChhhhHHHHhcC--CcHHHHH------HHHHHHHHc--CC--cccccccccchhhHhhcCce---------e
Q 015822 131 RQVIAVSKSSDIVLMVLDAS--KSEGHRQ------ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~--~~~~~~~------~i~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
+|....+. ..+...+.... ....... .+.+.+..+ ++ .+++++..||+||+||++++ +
T Consensus 81 ~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 81 PQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred CCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 55443332 22222221111 1111111 112222333 22 34566789999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHH
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~ 227 (399)
++||||++||......+++.+. ...+++++||+.....
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 200 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV 200 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 9999999999986655555443 3348999999976543
No 296
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=165.66 Aligned_cols=177 Identities=13% Similarity=0.115 Sum_probs=114.3
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+... .|..|.+.++|.++...+.. . ......+++.
T Consensus 27 ~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v 96 (264)
T PRK14243 27 KNVWLDIPK--NQITAFIGPSGCGKSTILRCFNRLNDLIPG------FRVEGKVTFHGKNLYAPDVD-P-VEVRRRIGMV 96 (264)
T ss_pred ecceEEEcC--CCEEEEECCCCCCHHHHHHHHHhhhcccCC------CCCceEEEECCEEccccccC-h-HHHhhhEEEE
Confidence 378888888 789999999999999999999998642100 13689999999876421110 0 1112345666
Q ss_pred hhhccccCC--hhhhHHHHhcCC-cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eeec
Q 015822 131 RQVIAVSKS--SDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~~-~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~D 192 (399)
+|....+.. .+.+.+...... .....+.+...++.+++ ..++.+..||+||+||++|+ +++|
T Consensus 97 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 176 (264)
T PRK14243 97 FQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMD 176 (264)
T ss_pred ccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 665433321 222222111111 11222345556666665 35678899999999999998 9999
Q ss_pred cCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEe
Q 015822 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYN 246 (399)
Q Consensus 193 Epts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~N 246 (399)
|||++||......+++.+ ....++|++||+..... .....++++|
T Consensus 177 EPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~---------~~~d~v~~l~ 224 (264)
T PRK14243 177 EPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAA---------RVSDMTAFFN 224 (264)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH---------HhCCEEEEEe
Confidence 999999998655554444 33458999999965422 1235677777
No 297
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=165.15 Aligned_cols=165 Identities=15% Similarity=0.141 Sum_probs=109.8
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+-. | ....|.+.++|.++...+.. .......+++.
T Consensus 24 ~~isl~i~~--Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~--~----~~~~G~i~~~g~~i~~~~~~--~~~~~~~i~~v 93 (259)
T PRK14260 24 EGISMDIYR--NKVTAIIGPSGCGKSTFIKTLNRISELEG--P----VKVEGVVDFFGQNIYDPRIN--INRLRRQIGMV 93 (259)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcCccc--C----CccceEEEECCEeccccccc--hHhhhhheEEE
Confidence 378888888 78999999999999999999999864300 0 00479999999876421110 01112345665
Q ss_pred hhhccccC--ChhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSK--SSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~--~~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+. -.+.+.+..... ......+.+.+.++.+++ .+++.+..||+||+||++|| ++
T Consensus 94 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 173 (259)
T PRK14260 94 FQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLL 173 (259)
T ss_pred ecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55543332 123332221111 112233456777888876 35778899999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~ 225 (399)
+||||++||......+.+.+ ....+++++||+...
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 211 (259)
T PRK14260 174 MDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQ 211 (259)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999988555544444 333589999999764
No 298
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.4e-18 Score=164.93 Aligned_cols=164 Identities=18% Similarity=0.136 Sum_probs=110.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+... -|.+|.+.++|.++...+.+ ....+..+++.+
T Consensus 43 ~vs~~i~~--Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~------~~~~G~i~i~g~~i~~~~~~--~~~~~~~i~~v~ 112 (272)
T PRK14236 43 DISMRIPK--NRVTAFIGPSGCGKSTLLRCFNRMNDLVDN------CRIEGEIRLDGQNIYDKKVD--VAELRRRVGMVF 112 (272)
T ss_pred eEEEEEcC--CCEEEEECCCCCCHHHHHHHHHhcCCCccC------CCCceEEEECCEECcccccC--HHHHhccEEEEe
Confidence 67888887 789999999999999999999998642100 03689999999876431110 011233456666
Q ss_pred hhccccCC--hhhhHHHHhcCC---cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDASK---SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~---~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+...... .......+.+.++.+++ .+++.+..||+||+||++++ +++
T Consensus 113 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllL 192 (272)
T PRK14236 113 QRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLL 192 (272)
T ss_pred cCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 55433332 233322211111 11223456777777776 35678899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~ 225 (399)
||||++||......+.+ .+....+++++||+...
T Consensus 193 DEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 229 (272)
T PRK14236 193 DEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ 229 (272)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH
Confidence 99999999986554444 44334589999999754
No 299
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.78 E-value=9.6e-19 Score=185.14 Aligned_cols=168 Identities=19% Similarity=0.180 Sum_probs=123.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++++ |+++||+|++|||||||+++|+|...| ..|.+.++|.++.-+|...+ +..+++.+
T Consensus 359 ~i~l~i~~--Ge~iaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----~~~i~~v~ 421 (592)
T PRK10790 359 NINLSVPS--RGFVALVGHTGSGKSTLASLLMGYYPL-----------TEGEIRLDGRPLSSLSHSVL----RQGVAMVQ 421 (592)
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEhhhCCHHHH----HhheEEEc
Confidence 66777777 789999999999999999999999866 89999999999987775443 34567777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+. . + ...+.+.+.++.+|+ .+...-..|||||+||+++|
T Consensus 422 Q~~~lF~~Ti~~NI~~~---~-~-~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 422 QDPVVLADTFLANVTLG---R-D-ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred cCCccccchHHHHHHhC---C-C-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 87766655 3444332 1 1 123345666666654 12233467999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+++||||++||.+.-..+.+.+. ...+++++||+...... ...++++++..+.
T Consensus 497 illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~----------~D~ii~l~~G~i~ 553 (592)
T PRK10790 497 ILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE----------ADTILVLHRGQAV 553 (592)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh----------CCEEEEEECCEEE
Confidence 99999999999997666666554 34699999999855332 4667788765544
No 300
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.2e-19 Score=188.22 Aligned_cols=158 Identities=17% Similarity=0.171 Sum_probs=106.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe-ecccC--ccccccccccCcc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLD--LPGIIEGASEGKG 128 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-i~~iD--~~Gl~~~~~~~~~ 128 (399)
+++|.|.+ |+++||+|+|||||||||++|+|...| ++|.|.++|.. +.++. .+.. .....+
T Consensus 19 ~vs~~i~~--Ge~v~LvG~NGsGKSTLLkiL~G~~~p-----------d~G~I~~~~~~~i~~~~q~~~~~---~~~~~~ 82 (638)
T PRK10636 19 NATATINP--GQKVGLVGKNGCGKSTLLALLKNEISA-----------DGGSYTFPGNWQLAWVNQETPAL---PQPALE 82 (638)
T ss_pred CcEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEecCCCCC---CCCHHH
Confidence 78888888 779999999999999999999998765 88999987642 22221 1100 011112
Q ss_pred cchhhccccCChh-------------hhHHH---HhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce-
Q 015822 129 RGRQVIAVSKSSD-------------IVLMV---LDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS- 188 (399)
Q Consensus 129 ~~~q~~~~~~~~d-------------~il~v---~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia- 188 (399)
+..+....+.... .+..+ .+.........++...|..+|+ ..++++..|||||+||++||
T Consensus 83 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~ 162 (638)
T PRK10636 83 YVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQ 162 (638)
T ss_pred HHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHH
Confidence 2221111000000 00000 0111111223467888999998 36889999999999999998
Q ss_pred --------eeeccCCCCCCHHHHHHHHHHhh-hCCcEEEEcCCCCH
Q 015822 189 --------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFREDATV 225 (399)
Q Consensus 189 --------li~DEpts~LD~~~v~~ll~~l~-~~~~~v~vthd~~~ 225 (399)
|++||||++||...+..+.+.+. +.+++|++|||...
T Consensus 163 aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~ 208 (638)
T PRK10636 163 ALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDF 208 (638)
T ss_pred HHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 99999999999998777766665 45699999999764
No 301
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=168.97 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=109.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+.-. .|.+|.+.++|.++..... .. ......+++.+
T Consensus 63 ~is~~i~~--Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~------~p~~G~I~i~g~~i~~~~~-~~-~~~~~~i~~v~ 132 (305)
T PRK14264 63 GVSMDIPE--KSVTALIGPSGCGKSTFLRCLNRMNDRIKA------ARIDGSVELDGQDIYQDGV-NL-VELRKRVGMVF 132 (305)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccccccCC------CCCceEEEECCEEcccccc-cH-HHHhhceEEEc
Confidence 67888887 789999999999999999999998642000 0378999999987642111 11 11123455655
Q ss_pred hhccccCC--hhhhHHHHhc--------------CC-cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce
Q 015822 132 QVIAVSKS--SDIVLMVLDA--------------SK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~--------------~~-~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia 188 (399)
|....+.. .+.+.+.... .. .....+.+.+.|+.+++ .+++++..||+||+||++|+
T Consensus 133 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LA 212 (305)
T PRK14264 133 QSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIA 212 (305)
T ss_pred cCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHH
Confidence 55433321 2223222110 00 11223456777888876 34778899999999999998
Q ss_pred ---------eeeccCCCCCCHHHHHHH---HHHhhhCCcEEEEcCCCCH
Q 015822 189 ---------FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATV 225 (399)
Q Consensus 189 ---------li~DEpts~LD~~~v~~l---l~~l~~~~~~v~vthd~~~ 225 (399)
+++||||++||......+ ++.+....++|++||+...
T Consensus 213 raL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 261 (305)
T PRK14264 213 RCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQ 261 (305)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 999999999999855444 4444334589999999765
No 302
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.78 E-value=8.2e-19 Score=189.39 Aligned_cols=169 Identities=14% Similarity=0.096 Sum_probs=123.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++|||+|++|||||||+++|+|...| .+|.+.++|.++.-+|...+ +..+++..
T Consensus 497 ~isl~i~~--Ge~vaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~i~~v~ 559 (710)
T TIGR03796 497 NFSLTLQP--GQRVALVGGSGSGKSTIAKLVAGLYQP-----------WSGEILFDGIPREEIPREVL----ANSVAMVD 559 (710)
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEeHHHCCHHHH----HhheeEEe
Confidence 66777777 789999999999999999999999865 89999999999987775443 34567777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+. .+....+.+.+.++..++ .+...-..|||||+||+++|
T Consensus 560 Q~~~lf~gTi~eNi~l~----~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ 635 (710)
T TIGR03796 560 QDIFLFEGTVRDNLTLW----DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635 (710)
T ss_pred cCChhhhccHHHHhhCC----CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 76655543 2333221 111223344555555443 23344578999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+++||||++||.+.-..+++.+.. +.|++++||+.+.... ...++++++.-+.
T Consensus 636 iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~----------~D~Iivl~~G~i~ 690 (710)
T TIGR03796 636 ILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD----------CDEIIVLERGKVV 690 (710)
T ss_pred EEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh----------CCEEEEEeCCEEE
Confidence 999999999999987777777763 4599999999865442 3667788765443
No 303
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=1.5e-18 Score=159.65 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=103.4
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||+|||||+++|+|...+ .+|.+.++|.++...+.. .....+++.
T Consensus 25 ~~isl~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~v 87 (207)
T cd03369 25 KNVSFKVKA--GEKIGIVGRTGAGKSTLILALFRFLEA-----------EEGKIEIDGIDISTIPLE----DLRSSLTII 87 (207)
T ss_pred cCceEEECC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEhHHCCHH----HHHhhEEEE
Confidence 377888888 779999999999999999999999765 899999999876432211 112345666
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHH
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~ 201 (399)
+|....+.. .+.-.+ ...... ..+.+.+.++ +++++..||+||+||++++ +++||||++||..
T Consensus 88 ~q~~~~~~~-tv~~~l-~~~~~~-~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 88 PQDPTLFSG-TIRSNL-DPFDEY-SDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred ecCCcccCc-cHHHHh-cccCCC-CHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 665433322 222111 111111 1122333343 4678899999999999998 9999999999998
Q ss_pred HHHHHHHHhh---hCCcEEEEcCCCCHH
Q 015822 202 LCYQILHEYK---IHNAEVLFREDATVD 226 (399)
Q Consensus 202 ~v~~ll~~l~---~~~~~v~vthd~~~~ 226 (399)
....+++.+. ...+++++||+....
T Consensus 160 ~~~~l~~~l~~~~~~~tiii~th~~~~~ 187 (207)
T cd03369 160 TDALIQKTIREEFTNSTILTIAHRLRTI 187 (207)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 6555544443 234899999997653
No 304
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.78 E-value=1.2e-18 Score=167.17 Aligned_cols=170 Identities=19% Similarity=0.153 Sum_probs=118.6
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|.+.+ |++++|+|+||+|||||+++|+|... ..|.|.++|.++..++...+ +..+++.
T Consensus 21 ~~isl~I~~--Ge~~~IvG~nGsGKSTLl~~L~gl~~------------~~G~I~i~g~~i~~~~~~~l----r~~i~~v 82 (275)
T cd03289 21 ENISFSISP--GQRVGLLGRTGSGKSTLLSAFLRLLN------------TEGDIQIDGVSWNSVPLQKW----RKAFGVI 82 (275)
T ss_pred eceEEEEcC--CCEEEEECCCCCCHHHHHHHHhhhcC------------CCcEEEECCEEhhhCCHHHH----hhhEEEE
Confidence 478888888 78999999999999999999999862 47999999998764433222 2345666
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccc-----------cchhhHhhcCce---------
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQ-----------IYFKKKKTGGIS--------- 188 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~-----------LS~g~kqr~~ia--------- 188 (399)
+|....+.. .+.-.+ +.... ...+.+.+.++.+|+ .+++.+.. ||+||+||++++
T Consensus 83 ~q~~~lf~~-tv~~nl-~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 83 PQKVFIFSG-TFRKNL-DPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred CCCcccchh-hHHHHh-hhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 665544432 222222 11111 122456777888888 56666655 999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+++||||++||......+.+.+. ...++|+++|+...... ...++++++.-+.
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~----------~dri~vl~~G~i~ 215 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE----------CQRFLVIEENKVR 215 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh----------CCEEEEecCCeEe
Confidence 99999999999986655555544 33489999999743221 3567788765544
No 305
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=6.5e-19 Score=157.58 Aligned_cols=127 Identities=16% Similarity=0.112 Sum_probs=90.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.. ......+++.+
T Consensus 18 ~~~~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-----~~~~~~i~~~~ 79 (173)
T cd03230 18 DISLTVEK--GEIYGLLGPNGAGKTTLIKIILGLLKP-----------DSGEIKVLGKDIKKEP-----EEVKRRIGYLP 79 (173)
T ss_pred eeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccch-----HhhhccEEEEe
Confidence 67888887 789999999999999999999998765 7899999998764221 11123345555
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~ 202 (399)
|....+....+. +.+ .||+||+||+.++ +++||||++||...
T Consensus 80 q~~~~~~~~tv~-----------------~~~------------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 130 (173)
T cd03230 80 EEPSLYENLTVR-----------------ENL------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPES 130 (173)
T ss_pred cCCccccCCcHH-----------------HHh------------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 543222111111 111 0999999999988 99999999999986
Q ss_pred HHHHHHHh---hhC-CcEEEEcCCCCH
Q 015822 203 CYQILHEY---KIH-NAEVLFREDATV 225 (399)
Q Consensus 203 v~~ll~~l---~~~-~~~v~vthd~~~ 225 (399)
...+++.+ ... .+++++|||...
T Consensus 131 ~~~l~~~l~~~~~~g~tiii~th~~~~ 157 (173)
T cd03230 131 RREFWELLRELKKEGKTILLSSHILEE 157 (173)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 55555444 333 489999999754
No 306
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.78 E-value=1.5e-18 Score=170.46 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=111.0
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCCh---hhh
Q 015822 67 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS---DIV 143 (399)
Q Consensus 67 lvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~---d~i 143 (399)
|+|+||||||||+++|+|...+ .+|.+.++|.++.-.. .....+++.+|....+... +.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~i~g~~i~~~~------~~~~~i~~v~q~~~l~~~~tv~enl 63 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP-----------DSGSIMLDGEDVTNVP------PHLRHINMVFQSYALFPHMTVEENV 63 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECCCCC------HHHCCEEEEecCccccCCCcHHHHH
Confidence 6899999999999999999865 8999999998874322 1134566777765555443 333
Q ss_pred HHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHH---H
Q 015822 144 LMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI---L 207 (399)
Q Consensus 144 l~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~l---l 207 (399)
.+..... ......+.+.+.++.+++ ..++++..||+||+||++|+ +++||||++||......+ +
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l 143 (325)
T TIGR01187 64 AFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143 (325)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 3322211 122234567888999998 67889999999999999998 999999999999855544 4
Q ss_pred HHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 208 HEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 208 ~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
.++.. ..++|++|||.....- ....++++++.-+
T Consensus 144 ~~l~~~~g~tiiivTHd~~e~~~---------~~d~i~vl~~G~i 179 (325)
T TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMT---------MSDRIAIMRKGKI 179 (325)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 44432 3489999999754221 1345666665443
No 307
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.5e-18 Score=168.94 Aligned_cols=181 Identities=16% Similarity=0.114 Sum_probs=119.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+|+||||||||+++|+|...+..+ .|..|.|.++|.++...+. ++. ..+..+++.+
T Consensus 100 ~is~~I~~--Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~------~p~~G~I~idG~~i~~~~~-~~~-~lr~~i~~v~ 169 (329)
T PRK14257 100 DLNLDIKR--NKVTAFIGPSGCGKSTFLRNLNQLNDLIEG------TSHEGEIYFLGTNTRSKKI-SSL-ELRTRIGMVF 169 (329)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccccccCC------CCCceEEEECCEEcccccc-chH-hhhccEEEEe
Confidence 67788887 789999999999999999999998643111 1368999999998742111 110 1233466666
Q ss_pred hhccccCC--hhhhHHHH--hcCCcHH-HHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVL--DASKSEG-HRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~--d~~~~~~-~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+.. +...... ....+...|+.+++ .++++...||+||+||++|| +++
T Consensus 170 q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLL 249 (329)
T PRK14257 170 QKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249 (329)
T ss_pred cCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 65544422 23333211 1111111 12235666777765 46788999999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
||||++||......+ +..+....|+|++||+.....- ....++|++..-+.
T Consensus 250 DEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~---------~~Driivl~~G~i~ 303 (329)
T PRK14257 250 DEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQR---------ISDETVFFYQGWIE 303 (329)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 999999999855444 4444334599999999765321 13567787765443
No 308
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=1.5e-18 Score=182.91 Aligned_cols=171 Identities=22% Similarity=0.232 Sum_probs=123.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...| .+|.+.++|.++.-+|...+ +..+++..
T Consensus 358 ~i~~~i~~--G~~~aivG~sGsGKSTL~~ll~g~~~p-----------~~G~I~i~g~~i~~~~~~~~----r~~i~~v~ 420 (574)
T PRK11160 358 GLSLQIKA--GEKVALLGRTGCGKSTLLQLLTRAWDP-----------QQGEILLNGQPIADYSEAAL----RQAISVVS 420 (574)
T ss_pred cceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEhhhCCHHHH----HhheeEEc
Confidence 66777777 779999999999999999999999765 89999999999877765433 33466667
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccc----------cccccchhhHhhcCce---------ee
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNK----------RPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~----------~~~~LS~g~kqr~~ia---------li 190 (399)
|....+.. .+...+.-+ .+....+.+.+.++.+++ .+.+ ....|||||+||+++| ++
T Consensus 421 Q~~~lf~~-ti~~Ni~~~-~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 421 QRVHLFSA-TLRDNLLLA-APNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred ccchhhcc-cHHHHhhcC-CCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76555543 222222111 122234457777888777 3333 4567999999999999 99
Q ss_pred eccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 191 STLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+||||++||.+.-..+.+.+. ...++++++|+...... ...++++++..+.
T Consensus 499 lDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~----------~d~i~~l~~G~i~ 552 (574)
T PRK11160 499 LDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ----------FDRICVMDNGQII 552 (574)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh----------CCEEEEEeCCeEE
Confidence 999999999987666666654 34599999999765332 3667888765544
No 309
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.4e-18 Score=163.63 Aligned_cols=162 Identities=20% Similarity=0.145 Sum_probs=107.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee-cccCccccc-cccccCccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI-QLLDLPGII-EGASEGKGR 129 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i-~~iD~~Gl~-~~~~~~~~~ 129 (399)
+++|.+.+ |++++|+|+||||||||+++|+|...+ .+|.+.++|... ...+...+. ......+++
T Consensus 28 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~iaG~~~~-----------~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~ 94 (257)
T PRK14246 28 DITIKIPN--NSIFGIMGPSGSGKSTLLKVLNRLIEI-----------YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGM 94 (257)
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CcCceeEcCEEEECCcccccCCHHHHhcceEE
Confidence 78888888 789999999999999999999999765 566555554321 001111110 011234566
Q ss_pred chhhccccCC---hhhhHHHHhc--CC-cHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------
Q 015822 130 GRQVIAVSKS---SDIVLMVLDA--SK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 130 ~~q~~~~~~~---~d~il~v~d~--~~-~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia--------- 188 (399)
.+|....+.. .+.+.+.... .. .......+.+.++.+++ ..++.+..||+||+||++++
T Consensus 95 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~l 174 (257)
T PRK14246 95 VFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKV 174 (257)
T ss_pred EccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 6665444433 2333222211 11 12223457788888887 24678899999999999998
Q ss_pred eeeccCCCCCCHHH---HHHHHHHhhhCCcEEEEcCCCCHH
Q 015822 189 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVD 226 (399)
Q Consensus 189 li~DEpts~LD~~~---v~~ll~~l~~~~~~v~vthd~~~~ 226 (399)
+++||||++||... +.+++..+....+++++||+....
T Consensus 175 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~ 215 (257)
T PRK14246 175 LLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV 215 (257)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHH
Confidence 99999999999985 445555554446999999997643
No 310
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.6e-18 Score=179.50 Aligned_cols=159 Identities=11% Similarity=0.116 Sum_probs=109.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|+||||||||+++|+|...+ ..|.|.++|.++.-... ......++++.+
T Consensus 266 ~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~---~~~~~~~i~~~~ 329 (491)
T PRK10982 266 DVSFDLHK--GEILGIAGLVGAKRTDIVETLFGIREK-----------SAGTITLHGKKINNHNA---NEAINHGFALVT 329 (491)
T ss_pred eeeEEEeC--CcEEEEecCCCCCHHHHHHHHcCCCcC-----------CccEEEECCEECCCCCH---HHHHHCCCEEcC
Confidence 67788888 789999999999999999999999765 89999999987643211 011123344444
Q ss_pred hhcc---ccCChhh--------hHHHHhc---CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce------
Q 015822 132 QVIA---VSKSSDI--------VLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------ 188 (399)
Q Consensus 132 q~~~---~~~~~d~--------il~v~d~---~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------ 188 (399)
|... .+.+..+ +...... .........+.+.++.+++ ..++++..||+||+||+.||
T Consensus 330 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 409 (491)
T PRK10982 330 EERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQ 409 (491)
T ss_pred CchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcC
Confidence 4321 1222111 1111110 0112234457788888888 36889999999999999998
Q ss_pred ---eeeccCCCCCCHHHHHHH---HHHhh-hCCcEEEEcCCCCHH
Q 015822 189 ---FNSTLPLTHVDEKLCYQI---LHEYK-IHNAEVLFREDATVD 226 (399)
Q Consensus 189 ---li~DEpts~LD~~~v~~l---l~~l~-~~~~~v~vthd~~~~ 226 (399)
+++||||++||......+ +..+. ...++|++|||....
T Consensus 410 p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~ 454 (491)
T PRK10982 410 PEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPEL 454 (491)
T ss_pred CCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHH
Confidence 999999999999865555 55544 345999999997653
No 311
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.9e-18 Score=156.93 Aligned_cols=163 Identities=18% Similarity=0.118 Sum_probs=125.4
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++++|.. |+..+|+||||||||||.++|+|.... +++.|.|.++|.+|.-+.+ .+.++.|+.+.
T Consensus 21 kgvnL~v~~--GEvhaiMGPNGsGKSTLa~~i~G~p~Y---------~Vt~G~I~~~GedI~~l~~---~ERAr~GifLa 86 (251)
T COG0396 21 KGVNLTVKE--GEVHAIMGPNGSGKSTLAYTIMGHPKY---------EVTEGEILFDGEDILELSP---DERARAGIFLA 86 (251)
T ss_pred cCcceeEcC--CcEEEEECCCCCCHHHHHHHHhCCCCc---------eEecceEEECCcccccCCH---hHHHhcCCEEe
Confidence 378888888 789999999999999999999998743 4589999999999876653 24567888889
Q ss_pred hhhccccCChhhhHHHH---hcCCc-----HHHHHHHHHHHHHcCC---cccccc-cccchhhHhhcCce---------e
Q 015822 131 RQVIAVSKSSDIVLMVL---DASKS-----EGHRQILTKELEAVGL---RLNKRP-PQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~---d~~~~-----~~~~~~i~~~L~~~gi---~~~~~~-~~LS~g~kqr~~ia---------l 189 (399)
+|....++...+..++. .+... ......+.+.++.+++ .+++.+ ..+||||++|..|. .
T Consensus 87 fQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ 166 (251)
T COG0396 87 FQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLA 166 (251)
T ss_pred ecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEE
Confidence 99888777755544443 22111 2345567788888888 677776 58999999999877 8
Q ss_pred eeccCCCCCCHHHHHHH---HHHhhhC-CcEEEEcCCCCHHH
Q 015822 190 NSTLPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDATVDD 227 (399)
Q Consensus 190 i~DEpts~LD~~~v~~l---l~~l~~~-~~~v~vthd~~~~~ 227 (399)
++|||-||||.+.++.+ ++.+.-. .++++|||...+.+
T Consensus 167 ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~ 208 (251)
T COG0396 167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLD 208 (251)
T ss_pred EecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHh
Confidence 99999999999865554 4445433 48999999876554
No 312
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.3e-18 Score=181.69 Aligned_cols=146 Identities=16% Similarity=0.120 Sum_probs=102.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE-eecccCccccccccccCccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGR 129 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-~i~~iD~~Gl~~~~~~~~~~ 129 (399)
.+++|++.+ |++++|+|+|||||||||++|+|...+ ..|.+.++|. .+.+
T Consensus 18 ~~vsl~i~~--Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~~i~~---------------- 68 (530)
T PRK15064 18 ENISVKFGG--GNRYGLIGANGCGKSTFMKILGGDLEP-----------SAGNVSLDPNERLGK---------------- 68 (530)
T ss_pred eCCEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEE----------------
Confidence 378888888 779999999999999999999998765 7899988762 1211
Q ss_pred chhhccccCC---hhhhHHH----------------------------------HhcCCcHHHHHHHHHHHHHcCC--cc
Q 015822 130 GRQVIAVSKS---SDIVLMV----------------------------------LDASKSEGHRQILTKELEAVGL--RL 170 (399)
Q Consensus 130 ~~q~~~~~~~---~d~il~v----------------------------------~d~~~~~~~~~~i~~~L~~~gi--~~ 170 (399)
.+|....+.. .|.+.+. ...........++.+.|+.+|+ ..
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 1111100000 1111100 0000011123457788999998 23
Q ss_pred -cccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHHHHHhhh-CCcEEEEcCCCCH
Q 015822 171 -NKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 171 -~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~ll~~l~~-~~~~v~vthd~~~ 225 (399)
++++..||+||+||+.+| +++||||++||+.....+.+.+.. ..++|++|||...
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~ 214 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHF 214 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 467899999999999998 999999999999988877777763 4589999999775
No 313
>PRK13409 putative ATPase RIL; Provisional
Probab=99.78 E-value=1.2e-18 Score=183.49 Aligned_cols=142 Identities=17% Similarity=0.181 Sum_probs=99.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++ .. +++.+
T Consensus 357 ~~s~~i~~--Geiv~l~G~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~-~~----------------i~y~~ 406 (590)
T PRK13409 357 VEGGEIYE--GEVIGIVGPNGIGKTTFAKLLAGVLKP-----------DEGEVDPE-LK----------------ISYKP 406 (590)
T ss_pred ecceEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEEe-ee----------------EEEec
Confidence 34455555 789999999999999999999999765 78988874 21 12222
Q ss_pred hhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|......+ .+.+........ ....+.+.|+.+++ ..++++..|||||+||++|| +++||||++
T Consensus 407 Q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 407 QYIKPDYDGTVEDLLRSITDDLG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred ccccCCCCCcHHHHHHHHhhhcC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 32221222 222222111111 12346788999998 67899999999999999998 999999999
Q ss_pred CCHHHHHHHHH---Hhhh--CCcEEEEcCCCCHH
Q 015822 198 VDEKLCYQILH---EYKI--HNAEVLFREDATVD 226 (399)
Q Consensus 198 LD~~~v~~ll~---~l~~--~~~~v~vthd~~~~ 226 (399)
||......+.+ .+.. ..+++++|||....
T Consensus 484 LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~ 517 (590)
T PRK13409 484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIYMI 517 (590)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99986555544 4432 35899999997654
No 314
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.1e-18 Score=161.98 Aligned_cols=164 Identities=18% Similarity=0.109 Sum_probs=109.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||+|||||+++|+|...+.. ..|.+|.+.++|.++...+. .. ......+++.+
T Consensus 21 ~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~v~~~g~~i~~~~~-~~-~~~~~~i~~~~ 90 (250)
T PRK14266 21 NVNLDIPK--NSVTALIGPSGCGKSTFIRTLNRMNDLIP------GFRHEGHIYLDGVDIYDPAV-DV-VELRKKVGMVF 90 (250)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhhccCC------CCCCccEEEECCEEcccccc-cH-HHHhhheEEEe
Confidence 77888888 77999999999999999999999753100 01268999999987643110 00 11233456666
Q ss_pred hhccccCC--hhhhHHHHhcC---CcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~---~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+..... ......+.+.+.++.+++ .+++++..||+||+||++++ +++
T Consensus 91 q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 170 (250)
T PRK14266 91 QKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILM 170 (250)
T ss_pred cCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 55433332 23332222111 112233456777888876 25778899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCH
Q 015822 192 TLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV 225 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~ 225 (399)
||||++||......+++ .+....+++++||+...
T Consensus 171 DEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~ 207 (250)
T PRK14266 171 DEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQ 207 (250)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 99999999986555444 44334589999999754
No 315
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.6e-18 Score=164.10 Aligned_cols=167 Identities=17% Similarity=0.057 Sum_probs=109.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ +|++ +.+|.+.++|.++...+..--......++++.
T Consensus 33 ~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~---~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 104 (265)
T PRK14252 33 KNINMMVHE--KQVTALIGPSGCGKSTFLRCFNRMHDL---YPGN---HYEGEIILHPDNVNILSPEVDPIEVRMRISMV 104 (265)
T ss_pred eeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhcccCC---CCCC---CcccEEEEcCccccccccccCHHHHhccEEEE
Confidence 377888888 789999999999999999999998653 1111 36899999987664321100001112345555
Q ss_pred hhhccccCC--hhhhHHHHhcC--Cc-HHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------ee
Q 015822 131 RQVIAVSKS--SDIVLMVLDAS--KS-EGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~--~~-~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
+|....+.. .+.+.+..... .. ....+.+.+.++.+++ .+++.+..||+||+||+.++ ++
T Consensus 105 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 184 (265)
T PRK14252 105 FQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILL 184 (265)
T ss_pred ccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 554433332 23333222111 11 1123456667777765 34678899999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCH
Q 015822 191 STLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~ 225 (399)
+||||++||......+++.+ ....+++++||+...
T Consensus 185 lDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~ 222 (265)
T PRK14252 185 FDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQ 222 (265)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 99999999998655554444 333589999999754
No 316
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.77 E-value=2.6e-18 Score=175.40 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=103.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+++||+|+|||||||||++|+|...+ ..|.+.++|.+......++ +
T Consensus 42 nVSfsI~~--GEivgIiGpNGSGKSTLLkiLaGLl~P-----------~sGeI~I~G~~~~i~~~~~----------l-- 96 (549)
T PRK13545 42 NISFEVPE--GEIVGIIGLNGSGKSTLSNLIAGVTMP-----------NKGTVDIKGSAALIAISSG----------L-- 96 (549)
T ss_pred eeEEEEeC--CCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeeeEEeccc----------c--
Confidence 67888888 789999999999999999999999765 8999999986521100000 0
Q ss_pred hhccccCChhhhHHHH--hcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCC
Q 015822 132 QVIAVSKSSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (399)
Q Consensus 132 q~~~~~~~~d~il~v~--d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~L 198 (399)
...+.-.+.+.+.. .........+.+.++|+.+++ .+++++..||+||+||+++| +++||||++|
T Consensus 97 --~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL 174 (549)
T PRK13545 97 --NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174 (549)
T ss_pred --CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 00011122222211 111222233456778888998 67889999999999999988 9999999999
Q ss_pred CHHHHHHHHH---Hhhh-CCcEEEEcCCCCH
Q 015822 199 DEKLCYQILH---EYKI-HNAEVLFREDATV 225 (399)
Q Consensus 199 D~~~v~~ll~---~l~~-~~~~v~vthd~~~ 225 (399)
|+.....+++ ++.. ..++|++|||...
T Consensus 175 D~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 175 DQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 9986555444 4433 3489999999754
No 317
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.77 E-value=8.9e-19 Score=183.01 Aligned_cols=150 Identities=21% Similarity=0.248 Sum_probs=110.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++++ |+++||+|++|||||||+|+|+|...| .+|.+.++|.++.-+ ... .+..+++++
T Consensus 353 ~isl~i~~--G~~vaIvG~SGsGKSTLl~lL~g~~~p-----------~~G~I~i~g~~i~~~-~~~----lr~~i~~V~ 414 (529)
T TIGR02868 353 GVSLDLPP--GERVAILGPSGSGKSTLLMLLTGLLDP-----------LQGEVTLDGVSVSSL-QDE----LRRRISVFA 414 (529)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhH-HHH----HHhheEEEc
Confidence 66777777 789999999999999999999999765 899999999988754 332 344567777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+. .+....+.+.+.++..++ .+...-..|||||+||+++|
T Consensus 415 Q~~~lF~~TI~eNI~~g----~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 415 QDAHLFDTTVRDNLRLG----RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred cCcccccccHHHHHhcc----CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 87666554 3444332 111223445666666554 12233467999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDA 223 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~ 223 (399)
+++||||++||.+.-..+.+.+. ...|+++|+|+.
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999997777766665 235899999973
No 318
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.77 E-value=2e-18 Score=164.74 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=100.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|........+++. .
T Consensus 42 ~is~~i~~--Ge~~~liG~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~----------~ 98 (264)
T PRK13546 42 DISLKAYE--GDVIGLVGINGSGKSTLSNIIGGSLSP-----------TVGKVDRNGEVSVIAISAGLS----------G 98 (264)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEeEEecccCCC----------C
Confidence 78888888 779999999999999999999999765 789999988521110111110 0
Q ss_pred hhccccCChhhhHHHH--hcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCC
Q 015822 132 QVIAVSKSSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (399)
Q Consensus 132 q~~~~~~~~d~il~v~--d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~L 198 (399)
+ +.-.+.+.+.. ...........+...++.+++ .+++++..||+||+||++++ +++||||++|
T Consensus 99 ~----~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 99 Q----LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred C----CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 0 11122222211 112222223345667777777 67888999999999999988 9999999999
Q ss_pred CHHHHH---HHHHHhhh-CCcEEEEcCCCCH
Q 015822 199 DEKLCY---QILHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 199 D~~~v~---~ll~~l~~-~~~~v~vthd~~~ 225 (399)
|+.... +++..+.. ..++|++||+...
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~~ 205 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ 205 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 998544 44444443 3489999999664
No 319
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.77 E-value=7.9e-19 Score=155.62 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=84.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+.++|+|+||+|||||+++|+|...+ ..|.+.++|.++...+..- .....+++.
T Consensus 18 ~i~~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~~~---~~~~~i~~~- 80 (163)
T cd03216 18 GVSLSVRR--GEVHALLGENGAGKSTLMKILSGLYKP-----------DSGEILVDGKEVSFASPRD---ARRAGIAMV- 80 (163)
T ss_pred eeEEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECCcCCHHH---HHhcCeEEE-
Confidence 67888888 789999999999999999999999765 8999999987664321100 000011111
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~ 202 (399)
.+||+||+||++++ +++||||++||...
T Consensus 81 -------------------------------------------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 81 -------------------------------------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred -------------------------------------------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 12999999999998 99999999999886
Q ss_pred HHHHHH---Hhhh-CCcEEEEcCCCCH
Q 015822 203 CYQILH---EYKI-HNAEVLFREDATV 225 (399)
Q Consensus 203 v~~ll~---~l~~-~~~~v~vthd~~~ 225 (399)
...+.+ ++.. ..+++++||+...
T Consensus 118 ~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 118 VERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 555444 4433 3489999999753
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.77 E-value=2.6e-18 Score=180.35 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=102.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.. |++++|+|+|||||||||++|+|...+ ..|.+.+++.. .+++.
T Consensus 22 ~~is~~i~~--Ge~~~liG~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~---------------~i~~v 73 (552)
T TIGR03719 22 KDISLSFFP--GAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FNGEARPAPGI---------------KVGYL 73 (552)
T ss_pred cCceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCC---------------EEEEE
Confidence 377888888 779999999999999999999999765 78988875410 11222
Q ss_pred hhhccccCC---hhhhHHHH--------------------------------------hcCCcHHHHHHHHHHHHHcCC-
Q 015822 131 RQVIAVSKS---SDIVLMVL--------------------------------------DASKSEGHRQILTKELEAVGL- 168 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~--------------------------------------d~~~~~~~~~~i~~~L~~~gi- 168 (399)
+|....+.+ .+.+.+.+ +..+......++.+.|+.+|+
T Consensus 74 ~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 153 (552)
T TIGR03719 74 PQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP 153 (552)
T ss_pred eccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC
Confidence 222211111 12221100 000000012345667777887
Q ss_pred cccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHHHHHhh-hCCcEEEEcCCCCHH
Q 015822 169 RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFREDATVD 226 (399)
Q Consensus 169 ~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~ll~~l~-~~~~~v~vthd~~~~ 226 (399)
..++++..||+||+||++++ +++||||++||......+.+.+. ..+++|++|||....
T Consensus 154 ~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~ 221 (552)
T TIGR03719 154 PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFL 221 (552)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 55788999999999999998 99999999999997777666665 446999999997653
No 321
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.77 E-value=1.7e-18 Score=186.53 Aligned_cols=168 Identities=18% Similarity=0.233 Sum_probs=120.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|+||||||||++.|+|...| .+|.+.++|.++.-++...+ +..+++++
T Consensus 483 ~i~l~i~~--G~~iaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~l~~~~~~~l----r~~i~~v~ 545 (694)
T TIGR03375 483 NVSLTIRP--GEKVAIIGRIGSGKSTLLKLLLGLYQP-----------TEGSVLLDGVDIRQIDPADL----RRNIGYVP 545 (694)
T ss_pred eeeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEhhhCCHHHH----HhccEEEC
Confidence 66777777 789999999999999999999999866 89999999999887765433 34567777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+ . .+....+.+.+.++..++ .+...-..|||||+||+++|
T Consensus 546 Q~~~lf~~TI~eNi~~---~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 546 QDPRLFYGTLRDNIAL---G-APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred CChhhhhhhHHHHHhC---C-CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 76655543 233322 1 111123344555555443 23344568999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+++||||++||.+.-..+.+.+. ...|+++|||+.+.... .+.|+++++.-+
T Consensus 622 iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~----------~D~iivl~~G~i 677 (694)
T TIGR03375 622 ILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDL----------VDRIIVMDNGRI 677 (694)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh----------CCEEEEEeCCEE
Confidence 99999999999997666666664 24599999999865432 466778876543
No 322
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.77 E-value=2e-18 Score=163.87 Aligned_cols=158 Identities=18% Similarity=0.158 Sum_probs=102.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEE-----------ECCEeecccCccccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-----------YNDTKIQLLDLPGII 120 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~-----------~~g~~i~~iD~~Gl~ 120 (399)
++++ +.+ |++++|+|+|||||||||++|+|...+ ..|.+. ++|.++.-.... ..
T Consensus 19 ~i~~-i~~--Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~~~~~~~~~~~~g~~~~~~~~~-~~ 83 (255)
T cd03236 19 RLPV-PRE--GQVLGLVGPNGIGKSTALKILAGKLKP-----------NLGKFDDPPDWDEILDEFRGSELQNYFTK-LL 83 (255)
T ss_pred cCCC-CCC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEeeccccchhhhhccCchhhhhhHH-hh
Confidence 4553 555 789999999999999999999999866 789886 445444221100 00
Q ss_pred cccccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------e
Q 015822 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 121 ~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
. ....+++..+....... .+...+.+..........+.+.++.+|+ ..++.+..||+||+||++++ +
T Consensus 84 ~-~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 84 E-GDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred h-cccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 0 00112233333322221 1111111111112234567888999998 57888999999999999988 9
Q ss_pred eeccCCCCCCHHHH---HHHHHHhhh-CCcEEEEcCCCCHH
Q 015822 190 NSTLPLTHVDEKLC---YQILHEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 190 i~DEpts~LD~~~v---~~ll~~l~~-~~~~v~vthd~~~~ 226 (399)
++||||++||.... .++++++.. ..+++++|||....
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~ 202 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVL 202 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 99999999999854 455555543 35899999997543
No 323
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.77 E-value=1.9e-18 Score=184.01 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=107.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe-ecccCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~-i~~iD~~Gl~~~~~~~~~~~ 130 (399)
+++|.+.+ |+++||+|+|||||||||++|+|...+ ++|.|.++|.. +..+.... .....+..
T Consensus 21 ~is~~i~~--Ge~v~LvG~NGsGKSTLLriiaG~~~p-----------~~G~I~~~~~~~~~~l~q~~----~~~~~~~v 83 (635)
T PRK11147 21 NAELHIED--NERVCLVGRNGAGKSTLMKILNGEVLL-----------DDGRIIYEQDLIVARLQQDP----PRNVEGTV 83 (635)
T ss_pred CcEEEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEeCCCCEEEEeccCC----CCCCCCCH
Confidence 78888888 779999999999999999999998765 78999987631 21111000 00011111
Q ss_pred hhhcc-----------ccC----------ChhhhHHH------HhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHh
Q 015822 131 RQVIA-----------VSK----------SSDIVLMV------LDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKK 183 (399)
Q Consensus 131 ~q~~~-----------~~~----------~~d~il~v------~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kq 183 (399)
.+... .+. ..+.+... ++.........++.+.|+.+|+..++++..|||||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekq 163 (635)
T PRK11147 84 YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLR 163 (635)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHH
Confidence 22110 000 00111100 0111111223467888999999668889999999999
Q ss_pred hcCce---------eeeccCCCCCCHHHHHHHHHHhh-hCCcEEEEcCCCCHH-HHHH
Q 015822 184 TGGIS---------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFREDATVD-DLID 230 (399)
Q Consensus 184 r~~ia---------li~DEpts~LD~~~v~~ll~~l~-~~~~~v~vthd~~~~-~~~~ 230 (399)
|++|| |++||||++||......+.+.+. +.+++|++|||.... .+++
T Consensus 164 Rv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d 221 (635)
T PRK11147 164 KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMAT 221 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcC
Confidence 99998 99999999999998777766665 457999999997643 3443
No 324
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=7.2e-19 Score=157.28 Aligned_cols=126 Identities=17% Similarity=0.223 Sum_probs=88.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||+|||||+++|+|...+ .+|.+.++|.++.-.+.. .....+++.+
T Consensus 20 ~~~~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~~ 82 (173)
T cd03246 20 NVSFSIEP--GESLAIIGPSGSGKSTLARLILGLLRP-----------TSGRVRLDGADISQWDPN----ELGDHVGYLP 82 (173)
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCeEEECCEEcccCCHH----HHHhheEEEC
Confidence 67788877 779999999999999999999999765 799999999876432211 1122233433
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~ 202 (399)
|....+. .. +.+.+ ||+||+||++++ +++||||++||...
T Consensus 83 q~~~~~~------------~t------v~~~l-------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~ 131 (173)
T cd03246 83 QDDELFS------------GS------IAENI-------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131 (173)
T ss_pred CCCcccc------------Cc------HHHHC-------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH
Confidence 3221111 00 11111 999999999998 99999999999986
Q ss_pred HHHH---HHHhhhC-CcEEEEcCCCCH
Q 015822 203 CYQI---LHEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 203 v~~l---l~~l~~~-~~~v~vthd~~~ 225 (399)
...+ +..+... .+++++|||...
T Consensus 132 ~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 132 ERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 5544 4444333 389999999754
No 325
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2e-18 Score=172.94 Aligned_cols=169 Identities=21% Similarity=0.220 Sum_probs=118.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.. |++|||+|++|||||||++.|+|...+ ++|.+.++|.++..+|...+.+ .+...+
T Consensus 356 ~~~l~l~~--GEkvAIlG~SGsGKSTllqLl~~~~~~-----------~~G~i~~~g~~~~~l~~~~~~e----~i~vl~ 418 (573)
T COG4987 356 NFNLTLAQ--GEKVAILGRSGSGKSTLLQLLAGAWDP-----------QQGSITLNGVEIASLDEQALRE----TISVLT 418 (573)
T ss_pred ccceeecC--CCeEEEECCCCCCHHHHHHHHHhccCC-----------CCCeeeECCcChhhCChhhHHH----HHhhhc
Confidence 77888888 789999999999999999999998754 9999999999998877543322 222233
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|-...+.. .|++.+ + ++....+.+.+.|+++|+ .+..--..|||||+||++||
T Consensus 419 Qr~hlF~~Tlr~NL~l---A-~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap 494 (573)
T COG4987 419 QRVHLFSGTLRDNLRL---A-NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP 494 (573)
T ss_pred cchHHHHHHHHHHHhh---c-CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence 33222211 111111 1 122223345556666655 23334579999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+++||||.+||+.+-.+++..+- .+.++++|||+....+. .+.|+|++..-+.
T Consensus 495 l~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~----------~drIivl~~Gkii 551 (573)
T COG4987 495 LWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER----------MDRIIVLDNGKII 551 (573)
T ss_pred eEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh----------cCEEEEEECCeee
Confidence 99999999999998777777764 34599999999876553 5677787766444
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.77 E-value=2.5e-18 Score=180.50 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=102.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.. |++++|+|+|||||||||++|+|...+ .+|.|.+++. + .+++.+
T Consensus 340 ~isl~i~~--Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~-~--------------~i~~v~ 391 (552)
T TIGR03719 340 DLSFKLPP--GGIVGVIGPNGAGKSTLFRMITGQEQP-----------DSGTIKIGET-V--------------KLAYVD 391 (552)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEECCc-e--------------EEEEEe
Confidence 67777777 789999999999999999999998765 7899988542 1 122222
Q ss_pred hhcc-ccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIA-VSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~-~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|... .... .+.+.+...............+.|+.+++ ..++++..||+||+||+++| +++||||
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 3211 1111 22222211111111112235578888998 25788999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHhh-hCCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQILHEYK-IHNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll~~l~-~~~~~v~vthd~~~ 225 (399)
++||......+.+.+. +.+++|++|||...
T Consensus 472 ~~LD~~~~~~l~~~l~~~~~~viivsHd~~~ 502 (552)
T TIGR03719 472 NDLDVETLRALEEALLEFAGCAVVISHDRWF 502 (552)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 9999997777777665 34689999999764
No 327
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.77 E-value=1.2e-18 Score=154.84 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=88.8
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|. ..+++.
T Consensus 18 ~~i~l~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~---------------~~i~~~ 69 (166)
T cd03223 18 KDLSFEIKP--GDRLLITGPSGTGKSSLFRALAGLWPW-----------GSGRIGMPEG---------------EDLLFL 69 (166)
T ss_pred ecCeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCC---------------ceEEEE
Confidence 377888888 779999999999999999999999765 7899988762 112233
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHH
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~ 201 (399)
.|..... ...+ .+.+... .+..||+||+||++++ +++||||++||..
T Consensus 70 ~q~~~~~-~~tv-----------------~~nl~~~------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 70 PQRPYLP-LGTL-----------------REQLIYP------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125 (166)
T ss_pred CCCCccc-cccH-----------------HHHhhcc------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence 3322110 0000 0111000 4679999999999998 9999999999998
Q ss_pred HHHHHHHHhh-hCCcEEEEcCCCCHH
Q 015822 202 LCYQILHEYK-IHNAEVLFREDATVD 226 (399)
Q Consensus 202 ~v~~ll~~l~-~~~~~v~vthd~~~~ 226 (399)
....+.+.+. ...+++++||+....
T Consensus 126 ~~~~l~~~l~~~~~tiiivsh~~~~~ 151 (166)
T cd03223 126 SEDRLYQLLKELGITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHHHhCCEEEEEeCChhHH
Confidence 7776666655 346899999997543
No 328
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=8.9e-19 Score=157.44 Aligned_cols=132 Identities=18% Similarity=0.165 Sum_probs=89.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+... ......+++.+
T Consensus 18 ~i~~~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~~ 82 (178)
T cd03229 18 DVSLNIEA--GEIVALLGPSGSGKSTLLRCIAGLEEP-----------DSGSILIDGEDLTDLEDEL--PPLRRRIGMVF 82 (178)
T ss_pred eeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccchhH--HHHhhcEEEEe
Confidence 67888888 779999999999999999999998765 7999999998775332000 01122334444
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~ 202 (399)
|....+....+ .+.+ .+ .||+||+||+.++ +++||||++||...
T Consensus 83 q~~~~~~~~t~-----------------~~~l---~~-------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~ 135 (178)
T cd03229 83 QDFALFPHLTV-----------------LENI---AL-------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135 (178)
T ss_pred cCCccCCCCCH-----------------HHhe---ee-------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 33211111110 0000 00 1999999999988 99999999999985
Q ss_pred HHHH---HHHhhhC--CcEEEEcCCCCH
Q 015822 203 CYQI---LHEYKIH--NAEVLFREDATV 225 (399)
Q Consensus 203 v~~l---l~~l~~~--~~~v~vthd~~~ 225 (399)
...+ ++++... .+++++||+...
T Consensus 136 ~~~l~~~l~~~~~~~~~tiii~sH~~~~ 163 (178)
T cd03229 136 RREVRALLKSLQAQLGITVVLVTHDLDE 163 (178)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5544 4444433 589999999654
No 329
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.77 E-value=8.3e-19 Score=184.76 Aligned_cols=158 Identities=13% Similarity=0.104 Sum_probs=112.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++|+|+|++|+|||||+++|+|...+ ..|.+.++|.++..++...+ +..+++.+
T Consensus 350 ~inl~i~~--G~~v~IvG~sGsGKSTLl~lL~gl~~~-----------~~G~I~i~g~~i~~~~~~~~----~~~i~~v~ 412 (571)
T TIGR02203 350 SISLVIEP--GETVALVGRSGSGKSTLVNLIPRFYEP-----------DSGQILLDGHDLADYTLASL----RRQVALVS 412 (571)
T ss_pred CeeEEecC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCeEEECCEeHHhcCHHHH----HhhceEEc
Confidence 66777777 779999999999999999999999865 89999999999876654332 34467777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--c-----------ccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~-----------~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. ++--.+.-...+....+.+.+.++.+|+ . +...-..|||||+||+++| +
T Consensus 413 Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~il 491 (571)
T TIGR02203 413 QDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPIL 491 (571)
T ss_pred cCcccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 77655543 2222222111111223445666666655 1 2223357999999999999 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHH
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~ 227 (399)
++||||++||.+....+++.+. ...++++|||+.....
T Consensus 492 lLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~ 532 (571)
T TIGR02203 492 ILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE 532 (571)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH
Confidence 9999999999987666666554 3459999999986644
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.77 E-value=2.4e-18 Score=180.73 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=102.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.. |++++|+|+||||||||+++|+|...+ .+|.|.+++. + .+++.+
T Consensus 342 ~isl~i~~--Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~-~--------------~i~~v~ 393 (556)
T PRK11819 342 DLSFSLPP--GGIVGIIGPNGAGKSTLFKMITGQEQP-----------DSGTIKIGET-V--------------KLAYVD 393 (556)
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCc-e--------------EEEEEe
Confidence 67787877 789999999999999999999998765 7899988432 1 122223
Q ss_pred hhc-cccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVI-AVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~-~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|.. ..... .+.+.+.................|+.+++ ..++++..||+||+||+.++ +++||||
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 473 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT 473 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 321 11122 22222211111100112234568899998 25888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHhh-hCCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQILHEYK-IHNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~ll~~l~-~~~~~v~vthd~~~ 225 (399)
++||......+.+.+. +.+++|++|||...
T Consensus 474 ~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 504 (556)
T PRK11819 474 NDLDVETLRALEEALLEFPGCAVVISHDRWF 504 (556)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 9999997777766665 34689999999764
No 331
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.2e-18 Score=179.65 Aligned_cols=152 Identities=26% Similarity=0.360 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccC--cccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~--~~~~~q~~~~~~~~ 140 (399)
.+||++|.||+|||||||+|||....|+|+||+|.+..+|.+.+.|.+++++|.||...-.... ......++ .-..+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l-l~~~~ 82 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFL-LEGKP 82 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHH-hcCCC
Confidence 3699999999999999999999999999999999999999999999999999999987532111 11111221 22557
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|+++-++..-...++++
T Consensus 83 D~ivnVvDAtnLeRnLyltlQLlE-------------------------------------------------------- 106 (653)
T COG0370 83 DLIVNVVDATNLERNLYLTLQLLE-------------------------------------------------------- 106 (653)
T ss_pred CEEEEEcccchHHHHHHHHHHHHH--------------------------------------------------------
Confidence 999999999875443222111111
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHcC--CCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~~--~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
...|+++++|++|..... +.++|.+. .+++++||.+|.|+++|++++.+..
T Consensus 107 ----------------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~ 163 (653)
T COG0370 107 ----------------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELA 163 (653)
T ss_pred ----------------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 136999999999976432 23444332 4699999999999999999987754
No 332
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.76 E-value=2.2e-18 Score=185.95 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=119.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|++|||||||++.|+|...| .+|.|.++|.++.-+|...+ +..++++.
T Consensus 492 ~isl~i~~--G~~vaIvG~SGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~i~~v~ 554 (708)
T TIGR01193 492 DISLTIKM--NSKTTIVGMSGSGKSTLAKLLVGFFQA-----------RSGEILLNGFSLKDIDRHTL----RQFINYLP 554 (708)
T ss_pred ceeEEECC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCcEEEECCEEHHHcCHHHH----HHheEEEe
Confidence 66777777 789999999999999999999999865 89999999999987775543 34567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+...+.-...+....+.+.+.++..++ .+......|||||+||+++| +
T Consensus 555 Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~il 633 (708)
T TIGR01193 555 QEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVL 633 (708)
T ss_pred cCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 77665543 2222222111111122334444444433 23445578999999999999 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh-h-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK-I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~-~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
++||||++||.+.-..+++.+. . ..|+|+++|+.+.... ...++++++.-
T Consensus 634 iLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~----------~D~i~~l~~G~ 685 (708)
T TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQ----------SDKIIVLDHGK 685 (708)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHc----------CCEEEEEECCE
Confidence 9999999999987666665554 2 3589999999865442 35677777543
No 333
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.76 E-value=3.5e-18 Score=165.80 Aligned_cols=186 Identities=18% Similarity=0.195 Sum_probs=134.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++||++.+ |+.+||||.+|||||||=.+|++...+ .|.|.|.|.++.-.+-..+.+ .+..+..++
T Consensus 305 ~isl~L~~--gqTlGlVGESGSGKsTlG~allrL~~s------------~G~I~F~G~~i~~~~~~~mrp-lR~~mQvVF 369 (534)
T COG4172 305 GISLTLRR--GQTLGLVGESGSGKSTLGLALLRLIPS------------QGEIRFDGQDIDGLSRKEMRP-LRRRMQVVF 369 (534)
T ss_pred cceeEecC--CCeEEEEecCCCCcchHHHHHHhhcCc------------CceEEECCccccccChhhhhh-hhhhceEEE
Confidence 78888888 789999999999999999999998754 599999999987666544433 233344455
Q ss_pred hhcc--ccCChhhhHHH---Hhc----CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------ee
Q 015822 132 QVIA--VSKSSDIVLMV---LDA----SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~--~~~~~d~il~v---~d~----~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|... .-+...+--.+ +.. ....+..+++.+.|+.+|+ ..+++|+.+||||+||.+|| ++
T Consensus 370 QDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~ 449 (534)
T COG4172 370 QDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELIL 449 (534)
T ss_pred eCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEE
Confidence 5432 22222222111 111 1234556788999999999 68999999999999999999 89
Q ss_pred eccCCCCCCHH---HHHHHHHHhh-hCC-cEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHc
Q 015822 191 STLPLTHVDEK---LCYQILHEYK-IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (399)
Q Consensus 191 ~DEpts~LD~~---~v~~ll~~l~-~~~-~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~ 261 (399)
+|||||+||.. .+.++|+.++ ..+ +-++||||+.+.... ...++|+...-++.....+.+..
T Consensus 450 LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl---------~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 450 LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRAL---------CHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred ecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHh---------hceEEEEeCCEEeeeCCHHHHhc
Confidence 99999999987 5677777776 333 899999998875421 35678888776665554455543
No 334
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=3.8e-18 Score=153.90 Aligned_cols=133 Identities=14% Similarity=0.118 Sum_probs=90.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++...+... .....+++.
T Consensus 17 ~~vs~~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~~ 80 (182)
T cd03215 17 RDVSFEVRA--GEIVGIAGLVGNGQTELAEALFGLRPP-----------ASGEITLDGKPVTRRSPRD---AIRAGIAYV 80 (182)
T ss_pred cceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccCHHH---HHhCCeEEe
Confidence 367888888 779999999999999999999999765 8999999998775433110 112234444
Q ss_pred hhhcc---ccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCC
Q 015822 131 RQVIA---VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (399)
Q Consensus 131 ~q~~~---~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~L 198 (399)
+|... .+....+ .+.+... ..||+||+||++++ +++||||++|
T Consensus 81 ~q~~~~~~~~~~~t~-----------------~e~l~~~--------~~LS~G~~qrl~la~al~~~p~llllDEP~~~L 135 (182)
T cd03215 81 PEDRKREGLVLDLSV-----------------AENIALS--------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGV 135 (182)
T ss_pred cCCcccCcccCCCcH-----------------HHHHHHH--------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCC
Confidence 44310 1111111 0111000 01999999999988 9999999999
Q ss_pred CHHHHHHHHH---Hhhh-CCcEEEEcCCCC
Q 015822 199 DEKLCYQILH---EYKI-HNAEVLFREDAT 224 (399)
Q Consensus 199 D~~~v~~ll~---~l~~-~~~~v~vthd~~ 224 (399)
|......+.+ .+.. ..+++++||+..
T Consensus 136 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 136 DVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 9986555444 4433 348999999964
No 335
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.76 E-value=1.6e-18 Score=158.75 Aligned_cols=137 Identities=18% Similarity=0.066 Sum_probs=93.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|... ..|..|.+.++|.++.-.+.... ....+++.+
T Consensus 18 ~is~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~---------~~p~~G~i~~~g~~~~~~~~~~~---~~~~i~~v~ 83 (200)
T cd03217 18 GVNLTIKK--GEVHALMGPNGSGKSTLAKTIMGHPK---------YEVTEGEILFKGEDITDLPPEER---ARLGIFLAF 83 (200)
T ss_pred ccceEECC--CcEEEEECCCCCCHHHHHHHHhCCCc---------CCCCccEEEECCEECCcCCHHHH---hhCcEEEee
Confidence 77888888 78999999999999999999999841 12489999999988754432110 112244444
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~ 202 (399)
|....+.... +.+.+ .+.+..||+||+||+.++ +++||||++||...
T Consensus 84 q~~~~~~~~~-----------------~~~~l-------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 139 (200)
T cd03217 84 QYPPEIPGVK-----------------NADFL-------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139 (200)
T ss_pred cChhhccCcc-----------------HHHHH-------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 4322211111 11111 223368999999999998 99999999999885
Q ss_pred HHHHHH---Hhhh-CCcEEEEcCCCCHH
Q 015822 203 CYQILH---EYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 203 v~~ll~---~l~~-~~~~v~vthd~~~~ 226 (399)
...+++ .+.. ..+++++||+....
T Consensus 140 ~~~l~~~L~~~~~~~~tiii~sh~~~~~ 167 (200)
T cd03217 140 LRLVAEVINKLREEGKSVLIITHYQRLL 167 (200)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 554444 4433 34899999997643
No 336
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.76 E-value=3.3e-18 Score=184.50 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=120.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++++ |++++|+|+||||||||+++|+|...| .+|.|.++|.++.-++...+ +..+++..
T Consensus 499 ~isl~i~~--Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~i~~v~ 561 (711)
T TIGR00958 499 GLTFTLHP--GEVVALVGPSGSGKSTVAALLQNLYQP-----------TGGQVLLDGVPLVQYDHHYL----HRQVALVG 561 (711)
T ss_pred CceEEEcC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCEEEECCEEHHhcCHHHH----HhhceEEe
Confidence 67788888 779999999999999999999999865 89999999999887765433 34467777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+-.. ....+.+.+.++..++ .+...-.+|||||+||+++|
T Consensus 562 Q~~~lF~gTIreNI~~g~~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ 637 (711)
T TIGR00958 562 QEPVLFSGSVRENIAYGLT----DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPR 637 (711)
T ss_pred cCccccccCHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 76655543 344433211 1112345555555543 23333468999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+++||||++||.+.-..+.+.... ..|+++|+|+.+.... ...|+|+++.-+.
T Consensus 638 ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~----------aD~IivL~~G~iv 692 (711)
T TIGR00958 638 VLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER----------ADQILVLKKGSVV 692 (711)
T ss_pred EEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh----------CCEEEEEECCEEE
Confidence 999999999999876666652223 3499999999765332 3667888765443
No 337
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.76 E-value=4.1e-18 Score=196.41 Aligned_cols=172 Identities=16% Similarity=0.208 Sum_probs=124.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...| ++|.+.++|.++.. +. ...+..+|+.+
T Consensus 948 ~lsl~I~~--Gei~aLLG~NGAGKSTLLkiLaGLl~P-----------tsG~I~i~G~dI~~-~~----~~~r~~IG~~p 1009 (2272)
T TIGR01257 948 RLNITFYE--NQITAFLGHNGAGKTTTLSILTGLLPP-----------TSGTVLVGGKDIET-NL----DAVRQSLGMCP 1009 (2272)
T ss_pred eeEEEEcC--CcEEEEECCCCChHHHHHHHHhcCCCC-----------CceEEEECCEECcc-hH----HHHhhcEEEEe
Confidence 67788877 789999999999999999999999866 89999999988742 11 12234567767
Q ss_pred hhccccCCh---hhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+... +.+.+..... ......+.+.+.|+.+|+ ..++++..||||||||+++| +++||||
T Consensus 1010 Q~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPT 1089 (2272)
T TIGR01257 1010 QHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089 (2272)
T ss_pred cCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 765444443 3333322222 122334567889999999 67889999999999999988 9999999
Q ss_pred CCCCHHH---HHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 196 THVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 196 s~LD~~~---v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||+.. +.+++++++...++|++||++...+. ....++++++.-+
T Consensus 1090 SGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~---------laDrI~iL~~GkL 1138 (2272)
T TIGR01257 1090 SGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADL---------LGDRIAIISQGRL 1138 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH---------hCCEEEEEECCEE
Confidence 9999985 44555555444589999999876542 1245566665443
No 338
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.1e-18 Score=172.95 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=118.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
|++|++.+ |++|||||+|||||||++|+|.+... .+|.|+++|+++.-++.-+++ .-+|+++
T Consensus 370 gvsf~I~k--GekVaIvG~nGsGKSTilr~LlrF~d------------~sG~I~IdG~dik~~~~~SlR----~~Ig~VP 431 (591)
T KOG0057|consen 370 GVSFTIPK--GEKVAIVGSNGSGKSTILRLLLRFFD------------YSGSILIDGQDIKEVSLESLR----QSIGVVP 431 (591)
T ss_pred ceeEEecC--CCEEEEECCCCCCHHHHHHHHHHHhc------------cCCcEEECCeeHhhhChHHhh----hheeEeC
Confidence 88999999 78999999999999999999999853 689999999999887765443 4567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|...++.+ .++-.+-.+. +....+.+.++.+++|+ .+..+-..||||||||++++ +
T Consensus 432 Qd~~LFnd-TIl~NI~YGn-~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 432 QDSVLFND-TILYNIKYGN-PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred Ccccccch-hHHHHhhcCC-CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeE
Confidence 76554432 2233333333 22334556667777776 13344568999999999998 8
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHH
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDL 228 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~ 228 (399)
++|||||+||.++-.++++.+. -..|+|+|-|+.++...
T Consensus 510 ~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 510 LLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD 551 (591)
T ss_pred EecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc
Confidence 9999999999997777777775 24499999999877553
No 339
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=2.5e-18 Score=181.86 Aligned_cols=167 Identities=14% Similarity=0.138 Sum_probs=117.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...| ..|.+.++|.++.-++...+ +..+++.+
T Consensus 353 ~inl~i~~--G~~v~IvG~sGsGKSTLl~lL~gl~~p-----------~~G~I~i~g~~i~~~~~~~~----r~~i~~v~ 415 (588)
T PRK13657 353 DVSFEAKP--GQTVAIVGPTGAGKSTLINLLQRVFDP-----------QSGRILIDGTDIRTVTRASL----RRNIAVVF 415 (588)
T ss_pred ceeEEECC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEhhhCCHHHH----HhheEEEe
Confidence 55666666 789999999999999999999999866 89999999999887664433 34467777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+- . +....+.+...++.+++ .+......|||||+||+++|
T Consensus 416 Q~~~lf~~Ti~~Ni~~~---~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ 491 (588)
T PRK13657 416 QDAGLFNRSIEDNIRVG---R-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491 (588)
T ss_pred cCcccccccHHHHHhcC---C-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 77655543 3333321 1 11112234444444433 23334467999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
+++||||++||.+....+++.+. ...++++|||+..... ....+++++..-
T Consensus 492 iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~----------~~D~ii~l~~G~ 546 (588)
T PRK13657 492 ILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR----------NADRILVFDNGR 546 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH----------hCCEEEEEECCE
Confidence 99999999999997777776664 2358999999985533 245677776543
No 340
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.5e-18 Score=154.90 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=89.7
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+|+||+|||||+++|+|...+ ..|.+.++|.++...+...+ ...+++.
T Consensus 19 ~~i~~~i~~--G~~~~l~G~nGsGKstLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~ 81 (171)
T cd03228 19 KDVSLTIKP--GEKVAIVGPSGSGKSTLLKLLLRLYDP-----------TSGEILIDGVDLRDLDLESL----RKNIAYV 81 (171)
T ss_pred cceEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCCEEEECCEEhhhcCHHHH----HhhEEEE
Confidence 367888888 779999999999999999999999765 78999999987654321111 1223333
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHH
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~ 201 (399)
+|.... .+. . +.+.+ ||+||+||++++ +++||||++||..
T Consensus 82 ~~~~~~----------~~~--t------~~e~l-------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~ 130 (171)
T cd03228 82 PQDPFL----------FSG--T------IRENI-------------LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130 (171)
T ss_pred cCCchh----------ccc--h------HHHHh-------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 332111 110 0 11111 999999999988 9999999999988
Q ss_pred HHHHHHHHh---hhCCcEEEEcCCCCHHH
Q 015822 202 LCYQILHEY---KIHNAEVLFREDATVDD 227 (399)
Q Consensus 202 ~v~~ll~~l---~~~~~~v~vthd~~~~~ 227 (399)
....+.+.+ ....+++++||+.....
T Consensus 131 ~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 131 TEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 655554444 33348999999976543
No 341
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.76 E-value=1.8e-18 Score=180.64 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=111.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|++|||||||+++|+|...| ..|.+.++|.++.-++...+ +..+++..
T Consensus 340 ~i~l~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~I~~~g~~i~~~~~~~l----r~~i~~v~ 402 (529)
T TIGR02857 340 PVSFTVPP--GERVALVGPSGAGKSTLLNLLLGFVDP-----------TEGSIAVNGVPLADADADSW----RDQIAWVP 402 (529)
T ss_pred ceeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEehhhCCHHHH----HhheEEEc
Confidence 56677777 789999999999999999999999865 89999999999877764333 34467777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+-..+.-+. +....+.+.+.++..++ .+......|||||+||+++| +
T Consensus 403 Q~~~lf~~-ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~il 480 (529)
T TIGR02857 403 QHPFLFAG-TIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLL 480 (529)
T ss_pred CCCcccCc-CHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 76655543 2222222111 11112344555555544 23344578999999999999 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHH
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~ 227 (399)
++||||++||.+.-..+++.+. ...+++++||+.....
T Consensus 481 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 481 LLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE 521 (529)
T ss_pred EEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 9999999999997776666664 2359999999986544
No 342
>PRK00089 era GTPase Era; Reviewed
Probab=99.75 E-value=3.5e-18 Score=165.38 Aligned_cols=155 Identities=31% Similarity=0.413 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCcccccccccc-CcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~-~~~~~~q~~~~~~~~d 141 (399)
+|+|+|+||||||||+|+|+|.. +.+++.|.||++...|.+..++.++.++||||+...... +..+.......+..+|
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D 86 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVD 86 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999987 468999999999999988877789999999998643211 1111122333456788
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|+........ ..+++.+
T Consensus 87 ~il~vvd~~~~~~~~~----------------------------------------------~~i~~~l----------- 109 (292)
T PRK00089 87 LVLFVVDADEKIGPGD----------------------------------------------EFILEKL----------- 109 (292)
T ss_pred EEEEEEeCCCCCChhH----------------------------------------------HHHHHHH-----------
Confidence 8888887765211100 0111111
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCC-ChhhH----HHHH---cCCCEEEecchhccchHHHHHHHHHHhC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDV----DKLA---RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~-~~~~~----~~l~---~~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
. ....|+++|+||+|+. ....+ +.+. ...+++++||.++.|+++|.+.+.+.+.
T Consensus 110 -----------~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 110 -----------K--KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred -----------h--hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 0 0126999999999998 43332 2222 2346899999999999999999988764
No 343
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.3e-18 Score=178.09 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=132.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
|++|++++ |+.||||||+|+||||+.+.|...+.| ++|.|.+||++|.-+|.-- .+..+|.+.
T Consensus 486 ~lsfti~p--Ge~vALVGPSGsGKSTiasLL~rfY~P-----------tsG~IllDG~~i~~~~~~~----lr~~Ig~V~ 548 (716)
T KOG0058|consen 486 NLSFTIRP--GEVVALVGPSGSGKSTIASLLLRFYDP-----------TSGRILLDGVPISDINHKY----LRRKIGLVG 548 (716)
T ss_pred CceeeeCC--CCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCCeEEECCeehhhcCHHH----HHHHeeeee
Confidence 78888888 789999999999999999999999865 9999999999999888543 345677777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHH------HHHHHHc--CC--cccccccccchhhHhhcCce---------ee
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQIL------TKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i------~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|....+.. .|+|.+-.+. ...++...+ .+.+..+ |. ....+-.+||||||||++|| |+
T Consensus 549 QEPvLFs~sI~eNI~YG~~~-~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLI 627 (716)
T KOG0058|consen 549 QEPVLFSGSIRENIAYGLDN-ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLI 627 (716)
T ss_pred ccceeecccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEE
Confidence 77666654 5677666552 222221111 1222222 22 44555679999999999999 99
Q ss_pred eccCCCCCCHH---HHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH
Q 015822 191 STLPLTHVDEK---LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (399)
Q Consensus 191 ~DEpts~LD~~---~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l 259 (399)
+||.||+||.+ .+++.|..+..+.|+++|.|.++..+- ...|+|++|.-+.....-+++
T Consensus 628 LDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~----------Ad~Ivvi~~G~V~E~G~h~eL 689 (716)
T KOG0058|consen 628 LDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH----------ADQIVVIDKGRVVEMGTHDEL 689 (716)
T ss_pred EechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh----------ccEEEEEcCCeEEecccHHHH
Confidence 99999999987 577777766666899999999876552 468999998865543333333
No 344
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.75 E-value=2.3e-18 Score=132.35 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=64.6
Q ss_pred ceEEEeCCCCCC-------CCCCCcEEeecCCCCCCHHHHHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCe
Q 015822 289 LVRVYTKPQGQQ-------PDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDV 361 (399)
Q Consensus 289 ~i~~~~~~~~~~-------p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dv 361 (399)
+++|||++++.. |++++||++++ |+|++++|..||+||.++|+||.+|| +||+|+||+|+||||
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~---g~tv~d~a~~IH~d~~~~F~~A~v~~------~~~vg~d~~l~d~DV 71 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKK---GTTVGDVARKIHGDLEKGFIEAVGGR------RRLEGKDVILGKNDI 71 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcC---CCCHHHHHHHHhHHHHhccEEEEEcc------CEEECCCEEecCCCE
Confidence 479999887765 89999999999 99999999999999999999999998 899999999999999
Q ss_pred EEEEe
Q 015822 362 VQIVK 366 (399)
Q Consensus 362 v~i~~ 366 (399)
|+|++
T Consensus 72 v~i~~ 76 (76)
T cd04938 72 LKFKT 76 (76)
T ss_pred EEEEC
Confidence 99974
No 345
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.75 E-value=3.6e-18 Score=176.87 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=107.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCcccc-ccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI-IEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl-~~~~~~~~~~~ 130 (399)
+++|++.+ |++++|+|+||||||||+++|+|..++ +.+|.+.++|.++. .+. .......+++.
T Consensus 278 ~vsl~i~~--Ge~~~i~G~NGsGKSTLl~~l~G~~~~----------~~~G~i~~~g~~~~----~~~~~~~~~~~i~~v 341 (490)
T PRK10938 278 NLSWQVNP--GEHWQIVGPNGAGKSTLLSLITGDHPQ----------GYSNDLTLFGRRRG----SGETIWDIKKHIGYV 341 (490)
T ss_pred eceEEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCc----------ccCCeEEEecccCC----CCCCHHHHHhhceEE
Confidence 77888887 779999999999999999999996431 14899999987542 110 01112345666
Q ss_pred hhhccccC----C-hhhhHHH-Hhc---C--CcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce--------
Q 015822 131 RQVIAVSK----S-SDIVLMV-LDA---S--KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 131 ~q~~~~~~----~-~d~il~v-~d~---~--~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
.|...... . .+++... .+. . ......+.+.+.|+.+++ ..++++..||+||+||+++|
T Consensus 342 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ 421 (490)
T PRK10938 342 SSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPT 421 (490)
T ss_pred CHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 65432211 1 1222111 110 0 112234567888999998 35788899999999999988
Q ss_pred -eeeccCCCCCCHHHHHHHHH---HhhhC-C-cEEEEcCCCCHH
Q 015822 189 -FNSTLPLTHVDEKLCYQILH---EYKIH-N-AEVLFREDATVD 226 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~---~l~~~-~-~~v~vthd~~~~ 226 (399)
+++||||++||......+.+ .+... . ++|++|||....
T Consensus 422 lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~ 465 (490)
T PRK10938 422 LLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA 465 (490)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence 99999999999986555544 44433 3 599999997654
No 346
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.75 E-value=7.1e-18 Score=155.97 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=96.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEE-ECCEeecccCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-YNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~-~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+. ++|..+.+ | ..
T Consensus 5 ~vs~~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-----------~sG~i~~~~~~~~~~----~----------~~ 57 (213)
T PRK15177 5 KTDFVMGY--HEHIGILAAPGSGKTTLTRLLCGLDAP-----------DEGDFIGLRGDALPL----G----------AN 57 (213)
T ss_pred eeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCccC-----------CCCCEEEecCceecc----c----------cc
Confidence 67888888 779999999999999999999999765 788886 66643311 0 00
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCC
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD 199 (399)
......+.-.+.+.+........ ..+.....+..+++ ..++++..||+||+||++++ +++|||++++|
T Consensus 58 ~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD 136 (213)
T PRK15177 58 SFILPGLTGEENARMMASLYGLD-GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGD 136 (213)
T ss_pred cccCCcCcHHHHHHHHHHHcCCC-HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCC
Confidence 11111112234443332221111 11111222334455 56788899999999999888 89999999999
Q ss_pred HHHHHHHHHHhh---hCCcEEEEcCCCCHH
Q 015822 200 EKLCYQILHEYK---IHNAEVLFREDATVD 226 (399)
Q Consensus 200 ~~~v~~ll~~l~---~~~~~v~vthd~~~~ 226 (399)
......+...+. ...+++++||+....
T Consensus 137 ~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~ 166 (213)
T PRK15177 137 NATQLRMQAALACQLQQKGLIVLTHNPRLI 166 (213)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 986655555442 234899999998754
No 347
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.75 E-value=6.9e-18 Score=178.27 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=115.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||++.|+|...+ .+|.+.++|.++.-++...+ +..+++..
T Consensus 353 ~i~~~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~ 415 (585)
T TIGR01192 353 DVSFEAKA--GQTVAIVGPTGAGKTTLINLLQRVYDP-----------TVGQILIDGIDINTVTRESL----RKSIATVF 415 (585)
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHccCCCC-----------CCCEEEECCEEhhhCCHHHH----HhheEEEc
Confidence 56677777 789999999999999999999999765 89999999998876654332 23456666
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHc-----------CC--cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~-----------gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+.-.+...... ...+.+.+.++.. |+ .+......|||||+||+++| +
T Consensus 416 q~~~lf~~-ti~~Ni~~~~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~il 493 (585)
T TIGR01192 416 QDAGLFNR-SIRENIRLGREG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493 (585)
T ss_pred cCCccCcc-cHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 66554432 222222111111 0111222222222 22 34566788999999999999 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||.+....+.+.+. ...+++++||+..... ....++++++..+.
T Consensus 494 ilDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~----------~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 494 VLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR----------NADLVLFLDQGRLI 548 (585)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH----------cCCEEEEEECCEEE
Confidence 9999999999987666655554 3459999999975433 14667888765443
No 348
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.75 E-value=4.7e-18 Score=181.32 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=121.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++...+...+.......+++.+
T Consensus 26 ~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~ 92 (648)
T PRK10535 26 GISLDIYA--GEMVAIVGASGSGKSTLMNILGCLDKP-----------TSGTYRVAGQDVATLDADALAQLRREHFGFIF 92 (648)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEcCcCCHHHHHHHHhccEEEEe
Confidence 77888888 789999999999999999999999765 89999999988765443221111124556666
Q ss_pred hhccccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++. .|.+.+... .....+..+.+.+.++.+|+ .+++.+..||+||+||+.++ +++||||
T Consensus 93 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~ 172 (648)
T PRK10535 93 QRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPT 172 (648)
T ss_pred CCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 66655544 333332221 11222344567888999998 67889999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCHHHHHHHH
Q 015822 196 THVDEKLCYQ---ILHEYKI-HNAEVLFREDATVDDLIDVI 232 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~~~~~~~i 232 (399)
++||...... +++++.. ..+++++||+....+.+|.+
T Consensus 173 ~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i 213 (648)
T PRK10535 173 GALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERV 213 (648)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEE
Confidence 9999985554 4444443 34899999998766655543
No 349
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=1.7e-18 Score=155.51 Aligned_cols=129 Identities=20% Similarity=0.149 Sum_probs=91.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++... + ......+++.+
T Consensus 20 ~i~~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~--~---~~~~~~i~~~~ 81 (178)
T cd03247 20 NLSLELKQ--GEKIALLGRSGSGKSTLLQLLTGDLKP-----------QQGEITLDGVPVSDL--E---KALSSLISVLN 81 (178)
T ss_pred EEEEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEEHHHH--H---HHHHhhEEEEc
Confidence 67888887 779999999999999999999999765 789999999876321 0 01122334444
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~ 202 (399)
|....+. .. +.+.+ +..||+||+||++++ +++||||++||...
T Consensus 82 q~~~~~~-~t-----------------v~~~i----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~ 133 (178)
T cd03247 82 QRPYLFD-TT-----------------LRNNL----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT 133 (178)
T ss_pred cCCeeec-cc-----------------HHHhh----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 4221110 00 01111 678999999999998 99999999999986
Q ss_pred HHHHHHHhh---hCCcEEEEcCCCCHH
Q 015822 203 CYQILHEYK---IHNAEVLFREDATVD 226 (399)
Q Consensus 203 v~~ll~~l~---~~~~~v~vthd~~~~ 226 (399)
...+++.+. ...+++++||+....
T Consensus 134 ~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 134 ERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 555554443 334899999997653
No 350
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.75 E-value=6.2e-18 Score=194.96 Aligned_cols=173 Identities=15% Similarity=0.111 Sum_probs=123.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+++||+|+|||||||||++|+|...+ ++|.+.++|.++.- + ....+..+|+.+
T Consensus 1957 ~ISf~I~~--GEi~gLLG~NGAGKTTLlkmL~Gll~p-----------tsG~I~i~G~~i~~-~----~~~~r~~IGy~p 2018 (2272)
T TIGR01257 1957 RLCVGVRP--GECFGLLGVNGAGKTTTFKMLTGDTTV-----------TSGDATVAGKSILT-N----ISDVHQNMGYCP 2018 (2272)
T ss_pred eeEEEEcC--CcEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECcc-h----HHHHhhhEEEEe
Confidence 67888888 789999999999999999999999866 89999999988732 1 112234567777
Q ss_pred hhccccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+... ........+.+.+.|+.+++ ..++++..||||||||+.+| +++||||
T Consensus 2019 Q~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPT 2098 (2272)
T TIGR01257 2019 QFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPT 2098 (2272)
T ss_pred ccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 76554443 233332222 11222234557788999999 67899999999999999888 9999999
Q ss_pred CCCCHHHHHH---HHHHhhhC-CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCYQ---ILHEYKIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~~-~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||+...+. ++..+... .++|++||++...+. ....++++++.-+.
T Consensus 2099 sGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~---------lcDrV~IL~~G~i~ 2149 (2272)
T TIGR01257 2099 TGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEA---------LCTRLAIMVKGAFQ 2149 (2272)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 9999985444 44454433 489999999765431 13556666665443
No 351
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=6.5e-18 Score=146.60 Aligned_cols=167 Identities=20% Similarity=0.166 Sum_probs=122.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC--CEeecccCcc--ccccccccCc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DTKIQLLDLP--GIIEGASEGK 127 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~--g~~i~~iD~~--Gl~~~~~~~~ 127 (399)
+++|++.. |++++|=||+|+||||||++|-+.+.+ ++|.|.+. |.-+.+.... .+..-.+.-+
T Consensus 29 ~vslsV~a--GECvvL~G~SG~GKStllr~LYaNY~~-----------d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~Ti 95 (235)
T COG4778 29 NVSLSVNA--GECVVLHGPSGSGKSTLLRSLYANYLP-----------DEGQILVRHEGEWVDLVTAEPREVLEVRRTTI 95 (235)
T ss_pred ceeEEecC--ccEEEeeCCCCCcHHHHHHHHHhccCC-----------CCceEEEEeCcchhhhhccChHHHHHHHHhhh
Confidence 77888887 789999999999999999999998876 89998773 3323332211 1122335678
Q ss_pred ccchhhccccCChhhhHHHH-----hcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------ee
Q 015822 128 GRGRQVIAVSKSSDIVLMVL-----DASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 128 ~~~~q~~~~~~~~d~il~v~-----d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|++.||+..++....+-.+. .+........+...+|.++++ ...-.|..+||||+||+.|+ ++
T Consensus 96 GyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILL 175 (235)
T COG4778 96 GYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILL 175 (235)
T ss_pred HHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEE
Confidence 99999998888754443332 223344556778899999998 34567889999999999998 88
Q ss_pred eccCCCCCCHH---HHHHHHHHhhhCC-cEEEEcCCCCHHH-HHHH
Q 015822 191 STLPLTHVDEK---LCYQILHEYKIHN-AEVLFREDATVDD-LIDV 231 (399)
Q Consensus 191 ~DEpts~LD~~---~v~~ll~~l~~~~-~~v~vthd~~~~~-~~~~ 231 (399)
+||||++||.. .+.+++.+-+..+ +++-|-||...-+ ++|.
T Consensus 176 LDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR 221 (235)
T COG4778 176 LDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADR 221 (235)
T ss_pred ecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhh
Confidence 99999999986 4666666666555 7888999976533 4443
No 352
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.75 E-value=9.3e-18 Score=159.56 Aligned_cols=169 Identities=12% Similarity=0.030 Sum_probs=108.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|.+.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++|.++.-.+.. ..+..+++.
T Consensus 38 ~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~~~~~~----~~~~~i~~v 100 (257)
T cd03288 38 KHVKAYIKP--GQKVGICGRTGSGKSSLSLAFFRMVDI-----------FDGKIVIDGIDISKLPLH----TLRSRLSII 100 (257)
T ss_pred eEEEEEEcC--CCEEEEECCCCCCHHHHHHHHHcccCC-----------CCCeEEECCEEhhhCCHH----HHhhhEEEE
Confidence 367888887 789999999999999999999998765 899999999876533221 112334555
Q ss_pred hhhccccCChhhhHHHHhcCC--cHHHHH------HHHHHHHHc--CC--cccccccccchhhHhhcCce---------e
Q 015822 131 RQVIAVSKSSDIVLMVLDASK--SEGHRQ------ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~--~~~~~~------~i~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
+|....+.. .+...+ .... ...... .+...+..+ ++ .+...+..||+||+||++++ +
T Consensus 101 ~q~~~l~~~-tv~~nl-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 178 (257)
T cd03288 101 LQDPILFSG-SIRFNL-DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL 178 (257)
T ss_pred CCCCccccc-HHHHhc-CcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 554333221 111111 1110 000000 122233333 33 34556689999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
++||||++||......+++.+. ...++|++||+...... ...+++++..
T Consensus 179 llDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~----------~dri~~l~~G 230 (257)
T cd03288 179 IMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD----------ADLVLVLSRG 230 (257)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh----------CCEEEEEECC
Confidence 9999999999986555544443 34589999999875432 2456666643
No 353
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.74 E-value=3.6e-18 Score=180.19 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=117.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++++ |+.++|+|+||+|||||+++|+|...| ..|.+.++|.++.-++...+ +..+++.+
T Consensus 358 ~inl~i~~--Ge~i~IvG~sGsGKSTLlklL~gl~~p-----------~~G~I~i~g~~i~~~~~~~~----~~~i~~~~ 420 (576)
T TIGR02204 358 GLNLTVRP--GETVALVGPSGAGKSTLFQLLLRFYDP-----------QSGRILLDGVDLRQLDPAEL----RARMALVP 420 (576)
T ss_pred ceeEEecC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCEEEECCEEHHhcCHHHH----HHhceEEc
Confidence 66777877 789999999999999999999999765 89999999999877664433 23467777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+. . +....+.+.+.++.+++ .+......|||||+||+++|
T Consensus 421 Q~~~lf~~Ti~~Ni~~~---~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ 496 (576)
T TIGR02204 421 QDPVLFAASVMENIRYG---R-PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496 (576)
T ss_pred cCCccccccHHHHHhcC---C-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 76655544 3444321 1 11112345555555443 23344567999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
+++||||++||......+++.+. ...+++++||+...... ...+++++..
T Consensus 497 ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~----------~d~vi~l~~g 550 (576)
T TIGR02204 497 ILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLK----------ADRIVVMDQG 550 (576)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh----------CCEEEEEECC
Confidence 99999999999986665555554 24599999999865442 3455666543
No 354
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.74 E-value=8.7e-18 Score=176.99 Aligned_cols=171 Identities=15% Similarity=0.149 Sum_probs=121.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+++ |+++||||++|||||||+|.|++...+ ..|.|.++|.++.-++...++ ..+++++
T Consensus 347 ~is~~i~~--Ge~vaiVG~sGsGKSTl~~LL~r~~~~-----------~~G~I~idg~dI~~i~~~~lr----~~I~~V~ 409 (567)
T COG1132 347 DISFSIEP--GEKVAIVGPSGSGKSTLIKLLLRLYDP-----------TSGEILIDGIDIRDISLDSLR----KRIGIVS 409 (567)
T ss_pred CceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCEehhhcCHHHHH----HhccEEc
Confidence 67888888 789999999999999999999999754 899999999999888765443 4466777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHc-----------CC--cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~-----------gi--~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+-.. ....+.+.+.++.. |+ .+...-..||||||||++||
T Consensus 410 Qd~~LF~~TI~~NI~~g~~----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 410 QDPLLFSGTIRENIALGRP----DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred ccceeecccHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 77666653 233332211 11112333333333 33 34445578999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~ 253 (399)
+++||||++||.++-..+.+.+. ...|+++|+|.++.... .+.|+|+++.-+...
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~----------aD~IiVl~~G~i~e~ 544 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN----------ADRIIVLDNGRIVER 544 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh----------CCEEEEEECCEEEEe
Confidence 99999999999986555555553 23489999999865442 467888888754433
No 355
>PLN03211 ABC transporter G-25; Provisional
Probab=99.74 E-value=1.5e-17 Score=177.22 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=109.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++++.+.+ |+.+||+||||||||||+++|+|...+ +..+|.+.++|.++.. .....+++..
T Consensus 86 ~vs~~i~~--Ge~~aI~GpnGaGKSTLL~iLaG~~~~---------~~~sG~I~inG~~~~~--------~~~~~i~yv~ 146 (659)
T PLN03211 86 GVTGMASP--GEILAVLGPSGSGKSTLLNALAGRIQG---------NNFTGTILANNRKPTK--------QILKRTGFVT 146 (659)
T ss_pred CCEEEEEC--CEEEEEECCCCCCHHHHHHHHhCCCCC---------CceeEEEEECCEECch--------hhccceEEEC
Confidence 78888888 789999999999999999999998644 1248999999987631 1122356666
Q ss_pred hhccccCC---hhhhHHHHhcC-----CcHHHHHHHHHHHHHcCC--cc-----cccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS---SDIVLMVLDAS-----KSEGHRQILTKELEAVGL--RL-----NKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~-----~~~~~~~~i~~~L~~~gi--~~-----~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .+.+.+..... ...+..+.+.+.|+.+|+ .. ++....||+||+||+.|+
T Consensus 147 Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~ 226 (659)
T PLN03211 147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 226 (659)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence 65444433 33333322111 112334567888999998 22 345678999999999998
Q ss_pred -eeeccCCCCCCHHHHHHHHH---Hhhh-CCcEEEEcCCCCH
Q 015822 189 -FNSTLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATV 225 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~---~l~~-~~~~v~vthd~~~ 225 (399)
+++||||++||......+++ .+.. ..++++++|+...
T Consensus 227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~ 268 (659)
T PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS 268 (659)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 99999999999985555444 4442 3499999999873
No 356
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.74 E-value=1.2e-17 Score=175.13 Aligned_cols=170 Identities=14% Similarity=0.155 Sum_probs=115.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...| .+|.+.++|.++..++...+ +..+++.+
T Consensus 336 ~~~~~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v~ 398 (544)
T TIGR01842 336 GISFRLQA--GEALAIIGPSGSGKSTLARLIVGIWPP-----------TSGSVRLDGADLKQWDRETF----GKHIGYLP 398 (544)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEehhhCCHHHH----hhheEEec
Confidence 66777777 779999999999999999999999765 89999999998876654322 34456666
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHH------HHHHHHHHc--CC--cccccccccchhhHhhcCce---------ee
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQ------ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~------~i~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------li 190 (399)
|....+.. .|.+... ......++.. .+.+.++.+ |+ .+......|||||+||+++| ++
T Consensus 399 q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili 477 (544)
T TIGR01842 399 QDVELFPGTVAENIARF-GENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477 (544)
T ss_pred CCcccccccHHHHHhcc-CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 66544433 2332211 1001111110 122334444 33 45556789999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHHHhh-h---CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 191 STLPLTHVDEKLCYQILHEYK-I---HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~~l~-~---~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
+||||++||.+....+.+.+. . ..++++++|+....+. ...++++++.-
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~----------~d~i~~l~~G~ 530 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC----------VDKILVLQDGR 530 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh----------CCEEEEEECCE
Confidence 999999999987666655554 2 3589999999764332 35567776543
No 357
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.4e-18 Score=155.09 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=116.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCc-cccccccccCccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGR 129 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~-~Gl~~~~~~~~~~ 129 (399)
+++++.|.+ |+..+|+|+||||||||++.++|...+ .+|.+.+.|.++.-.|+ ..+ +..+|+
T Consensus 48 ~~isW~V~~--ge~W~I~G~NGsGKTTLL~ll~~~~~p-----------ssg~~~~~G~~~G~~~~~~el----rk~IG~ 110 (257)
T COG1119 48 GDLSWQVNP--GEHWAIVGPNGAGKTTLLSLLTGEHPP-----------SSGDVTLLGRRFGKGETIFEL----RKRIGL 110 (257)
T ss_pred cccceeecC--CCcEEEECCCCCCHHHHHHHHhcccCC-----------CCCceeeeeeeccCCcchHHH----HHHhCc
Confidence 388999998 779999999999999999999999877 78999999998877776 333 233444
Q ss_pred chhhc-cccCC----hhhhHHHHhc-------CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce-------
Q 015822 130 GRQVI-AVSKS----SDIVLMVLDA-------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (399)
Q Consensus 130 ~~q~~-~~~~~----~d~il~v~d~-------~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia------- 188 (399)
+...+ ..++. .|+++--..+ .....+.+.+..+|+.+|+ ..++++..||-||++|+.||
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 33222 11222 2332211111 1124566778899999998 78999999999999999998
Q ss_pred --eeeccCCCCCCHHHHHHHHHHhh---hC--C-cEEEEcCCCC
Q 015822 189 --FNSTLPLTHVDEKLCYQILHEYK---IH--N-AEVLFREDAT 224 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~ll~~l~---~~--~-~~v~vthd~~ 224 (399)
+++|||+++||......+++.+. .. . ++++|||...
T Consensus 191 ~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e 234 (257)
T COG1119 191 ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234 (257)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence 99999999999987766666664 21 2 6899999753
No 358
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=6.8e-18 Score=156.55 Aligned_cols=180 Identities=18% Similarity=0.193 Sum_probs=124.4
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecc-----cCcccccccccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-----LDLPGIIEGASE 125 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~-----iD~~Gl~~~~~~ 125 (399)
.++||++.+ |++++++|+|||||||++++|+|...| .+|.+.++|..-.- ++--|+.-
T Consensus 41 qdisf~IP~--G~ivgflGaNGAGKSTtLKmLTGll~p-----------~~G~v~V~G~~Pf~~~~~~~~~~~~v~---- 103 (325)
T COG4586 41 QDISFEIPK--GEIVGFLGANGAGKSTTLKMLTGLLLP-----------TSGKVRVNGKDPFRRREEYLRSIGLVM---- 103 (325)
T ss_pred heeeeecCC--CcEEEEEcCCCCcchhhHHHHhCcccc-----------CCCeEEecCcCcchhHHHHHHHHHHHh----
Confidence 488999999 789999999999999999999999866 89999998853211 11111110
Q ss_pred CcccchhhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 126 GKGRGRQVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 126 ~~~~~~q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|.-.|.+..++- ..+.-.+.+... ..-.++...+-+.+++ .++.++..||.||+.|..++ +++
T Consensus 104 --gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd-~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfL 180 (325)
T COG4586 104 --GQKLQLWWDLPALDSLEVLKLIYEIPD-DEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFL 180 (325)
T ss_pred --hhhheeeeechhhhhHHHHHHHHhCCH-HHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence 111122222222 222223333322 2334556666677788 58999999999999999887 999
Q ss_pred ccCCCCCCHH---HHHHHHHHhh--hCCcEEEEcCCCCH-HHHHHHHhhccccccEEEEEecCCCCChhhHHHHH
Q 015822 192 TLPLTHVDEK---LCYQILHEYK--IHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (399)
Q Consensus 192 DEpts~LD~~---~v~~ll~~l~--~~~~~v~vthd~~~-~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~ 260 (399)
||||-+||.. .+++.++++. ...|+++.||+++. ..+ +..|+.+++.-++....+..+.
T Consensus 181 DEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~l----------c~rv~~I~~Gqlv~dg~l~~l~ 245 (325)
T COG4586 181 DEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATL----------CDRVLLIDQGQLVFDGTLAQLQ 245 (325)
T ss_pred cCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHh----------hhheEEeeCCcEeecccHHHHH
Confidence 9999999976 6778888887 33489999999653 333 3567888888777665666664
No 359
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=5.4e-18 Score=154.19 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=89.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|.... .|..|.+.++|.++. + .....+++.+
T Consensus 25 ~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~---------~~~~G~i~~~g~~~~--~------~~~~~i~~~~ 85 (192)
T cd03232 25 NISGYVKP--GTLTALMGESGAGKTTLLDVLAGRKTA---------GVITGEILINGRPLD--K------NFQRSTGYVE 85 (192)
T ss_pred ccEEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCcC---------CCcceEEEECCEehH--H------HhhhceEEec
Confidence 77888888 789999999999999999999997521 137899999998764 1 1122344444
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~ 202 (399)
|....+....+...+. ....+ ..||+||+||++++ +++||||++||...
T Consensus 86 q~~~~~~~~tv~~~l~-----------~~~~~-----------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~ 143 (192)
T cd03232 86 QQDVHSPNLTVREALR-----------FSALL-----------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143 (192)
T ss_pred ccCccccCCcHHHHHH-----------HHHHH-----------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHH
Confidence 4322222211111110 00000 18999999999988 99999999999986
Q ss_pred HHHHHH---Hhhh-CCcEEEEcCCCC
Q 015822 203 CYQILH---EYKI-HNAEVLFREDAT 224 (399)
Q Consensus 203 v~~ll~---~l~~-~~~~v~vthd~~ 224 (399)
...+++ ++.. ..+++++||+..
T Consensus 144 ~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 144 AYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 555444 4433 348999999976
No 360
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.74 E-value=1.2e-17 Score=179.96 Aligned_cols=168 Identities=11% Similarity=0.119 Sum_probs=117.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+++ |++++|+|+||||||||+++|+|...| .+|.|.++|.++.-+|...+ +..+++..
T Consensus 475 ~i~l~i~~--G~~vaivG~sGsGKSTL~~ll~g~~~p-----------~~G~I~idg~~i~~~~~~~~----r~~i~~v~ 537 (694)
T TIGR01846 475 NLNLDIKP--GEFIGIVGPSGSGKSTLTKLLQRLYTP-----------QHGQVLVDGVDLAIADPAWL----RRQMGVVL 537 (694)
T ss_pred cceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEehhhCCHHHH----HHhCeEEc
Confidence 66777777 789999999999999999999999865 89999999999887775433 33466666
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|++.+ . .+....+.+.+.++..++ .+......|||||+||+++|
T Consensus 538 q~~~lf~~ti~eNi~~---~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ 613 (694)
T TIGR01846 538 QENVLFSRSIRDNIAL---C-NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR 613 (694)
T ss_pred cCCeehhhhHHHHHhc---C-CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 66544433 233322 1 111122333444444332 34455678999999999998
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+++||||++||.+....+++.+. ...+++++||+...... ...++++++.-+
T Consensus 614 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~----------~d~ii~l~~G~i 669 (694)
T TIGR01846 614 ILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA----------CDRIIVLEKGQI 669 (694)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh----------CCEEEEEeCCEE
Confidence 99999999999987666666554 23589999999865432 356777766543
No 361
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=6.5e-18 Score=154.97 Aligned_cols=145 Identities=20% Similarity=0.279 Sum_probs=92.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ .+|.+.++| .+.++ .
T Consensus 23 ~~s~~i~~--G~~~~i~G~nG~GKSTLl~~i~G~~~~-----------~~G~i~~~g-~i~~~----------------~ 72 (204)
T cd03250 23 DINLEVPK--GELVAIVGPVGSGKSSLLSALLGELEK-----------LSGSVSVPG-SIAYV----------------S 72 (204)
T ss_pred eeeEEECC--CCEEEEECCCCCCHHHHHHHHhCcCCC-----------CCCeEEEcC-EEEEE----------------e
Confidence 77888888 779999999999999999999998765 899999988 22221 1
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHH-----HHHHHHHc--CC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQI-----LTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~-----i~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+... .......+. +...+..+ ++ .+.+.+..||+||+||++++ +++
T Consensus 73 q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llll 151 (204)
T cd03250 73 QEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLL 151 (204)
T ss_pred cCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111110 111111000 011000000 11112222 22 34566789999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHH----hhhC-CcEEEEcCCCCHHH
Q 015822 192 TLPLTHVDEKLCYQILHE----YKIH-NAEVLFREDATVDD 227 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~----l~~~-~~~v~vthd~~~~~ 227 (399)
||||++||......+++. +... .++|++||+.....
T Consensus 152 DEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~ 192 (204)
T cd03250 152 DDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLP 192 (204)
T ss_pred eCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHh
Confidence 999999999876655543 2223 48999999975433
No 362
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.74 E-value=1.5e-17 Score=175.16 Aligned_cols=168 Identities=16% Similarity=0.166 Sum_probs=115.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+.++|+|+||||||||+++|+|...| .+|.+.++|.++.-++...+ +..+++..
T Consensus 333 ~i~~~i~~--G~~~~ivG~sGsGKSTLl~ll~g~~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~ 395 (569)
T PRK10789 333 NVNFTLKP--GQMLGICGPTGSGKSTLLSLIQRHFDV-----------SEGDIRFHDIPLTKLQLDSW----RSRLAVVS 395 (569)
T ss_pred CeeEEECC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCEEEECCEEHhhCCHHHH----HhheEEEc
Confidence 66777777 779999999999999999999999765 89999999998866553322 23456666
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|.+.+ .. +....+.+...++..++ .+......|||||+||+++|
T Consensus 396 q~~~lf~~ti~~Ni~~---~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 396 QTPFLFSDTVANNIAL---GR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred cCCeeccccHHHHHhc---CC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 66544432 233322 11 11112233444444332 23445578999999999998
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+++||||++||.+....+++.+. ...+++++||+..... ....++++++..+
T Consensus 472 illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~----------~~d~i~~l~~G~i 527 (569)
T PRK10789 472 ILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT----------EASEILVMQHGHI 527 (569)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH----------cCCEEEEEeCCEE
Confidence 99999999999987666665554 3359999999975433 1356777766543
No 363
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.74 E-value=9.3e-18 Score=176.01 Aligned_cols=164 Identities=13% Similarity=0.018 Sum_probs=113.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+||||||||+++|+|...| .+|.+.++|.++.-++...+ +..+++..
T Consensus 341 ~i~~~i~~--G~~~aivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~ 403 (547)
T PRK10522 341 PINLTIKR--GELLFLIGGNGSGKSTLAMLLTGLYQP-----------QSGEILLDGKPVTAEQPEDY----RKLFSAVF 403 (547)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECCCCCHHHH----hhheEEEe
Confidence 66777777 789999999999999999999999765 89999999998875554332 23345555
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--ccccc-----ccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR-----PPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~-----~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+... +.+. ......+.+.+.++.+++ ..... -..|||||+||+++| +++||||
T Consensus 404 q~~~lf~~t-----i~~n-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 404 TDFHLFDQL-----LGPE-GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred cChhHHHHh-----hccc-cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 543322210 0111 112234456777888776 22211 248999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHhh----h-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 196 THVDEKLCYQILHEYK----I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 196 s~LD~~~v~~ll~~l~----~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
++||.+....+++.+. . ..++++++|+...... ...++++++.
T Consensus 478 s~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G 525 (547)
T PRK10522 478 ADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH----------ADRLLEMRNG 525 (547)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHh----------CCEEEEEECC
Confidence 9999987666555542 2 4599999999754332 3556676654
No 364
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.74 E-value=7.5e-18 Score=176.96 Aligned_cols=165 Identities=11% Similarity=0.042 Sum_probs=114.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|...| .+|.+.++|.++.-++...+ +..+++..
T Consensus 360 ~vs~~i~~--G~~~aivG~sGsGKSTl~~ll~g~~~p-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v~ 422 (555)
T TIGR01194 360 PIDLRIAQ--GDIVFIVGENGCGKSTLAKLFCGLYIP-----------QEGEILLDGAAVSADSRDDY----RDLFSAIF 422 (555)
T ss_pred cceEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHHH----HhhCcEEc
Confidence 46677777 789999999999999999999998765 89999999998876553222 23344555
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--ccccc------ccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR------PPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~------~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|....+.. .+ .+...+....+.+.+.++.+++ .+... ...|||||+||+++| +++|||
T Consensus 423 q~~~lf~~--ti---~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ 497 (555)
T TIGR01194 423 ADFHLFDD--LI---GPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEW 497 (555)
T ss_pred cChhhhhh--hh---hcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 54332221 11 0111122334557778888887 33222 357999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh----h-hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 195 LTHVDEKLCYQILHEY----K-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 195 ts~LD~~~v~~ll~~l----~-~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
|++||.+....+.+.+ . .+.+++++||+....+. ...++++++.
T Consensus 498 ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~----------~d~i~~l~~G 546 (555)
T TIGR01194 498 AADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL----------ADQIIKLAAG 546 (555)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh----------CCEEEEEECC
Confidence 9999999766665433 2 24599999999754332 3556676653
No 365
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=7.5e-18 Score=154.53 Aligned_cols=140 Identities=16% Similarity=0.035 Sum_probs=92.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+|.+.++|.++...+ ......+++.+
T Consensus 25 ~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~--------~~~~~G~i~i~g~~~~~~~-----~~~~~~i~~~~ 89 (202)
T cd03233 25 DFSGVVKP--GEMVLVLGRPGSGCSTLLKALANRTEG--------NVSVEGDIHYNGIPYKEFA-----EKYPGEIIYVS 89 (202)
T ss_pred eEEEEECC--CcEEEEECCCCCCHHHHHHHhcccCCC--------CCCcceEEEECCEECccch-----hhhcceEEEEe
Confidence 77888887 779999999999999999999999752 0137999999998765321 11223345555
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~ 202 (399)
|....+....+...+... .. ...++.+..||+||+||+.++ +++||||++||...
T Consensus 90 q~~~~~~~~tv~~~l~~~-------------~~---~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~ 153 (202)
T cd03233 90 EEDVHFPTLTVRETLDFA-------------LR---CKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153 (202)
T ss_pred cccccCCCCcHHHHHhhh-------------hh---hccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHH
Confidence 543323222221111100 00 015677889999999999988 99999999999985
Q ss_pred HH---HHHHHhhhC-C-cEEEEcCC
Q 015822 203 CY---QILHEYKIH-N-AEVLFRED 222 (399)
Q Consensus 203 v~---~ll~~l~~~-~-~~v~vthd 222 (399)
.. ++++++... + ++++++|+
T Consensus 154 ~~~~~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 154 ALEILKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 44 444544432 3 55655543
No 366
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.74 E-value=7.6e-18 Score=153.51 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=90.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCccccceeeeeceEEEECCEeecccCccccccccccCccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~ 129 (399)
+++|++.+ |+.++|+|+||+|||||+++|+|.. .+ ..|.+.++|.++... .....+++
T Consensus 27 ~~~~~i~~--Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-----------~~G~i~~~g~~~~~~-------~~~~~i~~ 86 (194)
T cd03213 27 NVSGKAKP--GELTAIMGPSGAGKSTLLNALAGRRTGLG-----------VSGEVLINGRPLDKR-------SFRKIIGY 86 (194)
T ss_pred cceEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CceEEEECCEeCchH-------hhhheEEE
Confidence 77888888 7799999999999999999999987 55 889999999876421 11223444
Q ss_pred chhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCH
Q 015822 130 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (399)
Q Consensus 130 ~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~ 200 (399)
.+|....+....+...+ .. . .. ...||+||+||+.++ +++||||++||.
T Consensus 87 ~~q~~~~~~~~t~~~~i----------~~---~-~~--------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~ 144 (194)
T cd03213 87 VPQDDILHPTLTVRETL----------MF---A-AK--------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144 (194)
T ss_pred ccCcccCCCCCcHHHHH----------HH---H-HH--------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 44433222211111100 00 0 00 018999999999988 999999999999
Q ss_pred HHHHHHHH---Hhhh-CCcEEEEcCCCC
Q 015822 201 KLCYQILH---EYKI-HNAEVLFREDAT 224 (399)
Q Consensus 201 ~~v~~ll~---~l~~-~~~~v~vthd~~ 224 (399)
.....+++ ++.. ..+++++||+..
T Consensus 145 ~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 145 SSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 86555544 4432 348999999985
No 367
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.3e-17 Score=145.33 Aligned_cols=162 Identities=21% Similarity=0.198 Sum_probs=110.0
Q ss_pred CCCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCcccccccc-----c
Q 015822 50 GAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA-----S 124 (399)
Q Consensus 50 ~~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~-----~ 124 (399)
..+++|++.+ |+..+|||.+|+||||||++|++...| +.|.+.|....=+..|...+.+.. +
T Consensus 22 c~~vsF~l~P--GeVLgiVGESGSGKtTLL~~is~rl~p-----------~~G~v~Y~~r~~~~~dl~~msEaeRR~L~R 88 (258)
T COG4107 22 CRDVSFDLYP--GEVLGIVGESGSGKTTLLKCISGRLTP-----------DAGTVTYRMRDGQPRDLYTMSEAERRRLLR 88 (258)
T ss_pred ccccceeecC--CcEEEEEecCCCcHHhHHHHHhcccCC-----------CCCeEEEEcCCCCchhHhhhchHHHHHHhh
Confidence 3488999988 789999999999999999999999876 899998854333333333322211 1
Q ss_pred cCcccchhhccccCChhhhHHH-------------HhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce
Q 015822 125 EGKGRGRQVIAVSKSSDIVLMV-------------LDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS 188 (399)
Q Consensus 125 ~~~~~~~q~~~~~~~~d~il~v-------------~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia 188 (399)
..-|++.|.. .|-+-.- +.+..-....+...++|+.+.| +++..|..+|||++||+.||
T Consensus 89 TeWG~VhQnP-----~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiA 163 (258)
T COG4107 89 TEWGFVHQNP-----RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA 163 (258)
T ss_pred hccceeecCc-----cccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHH
Confidence 1122233322 2221111 1111111223446678899888 78889999999999999998
Q ss_pred ---------eeeccCCCCCCHHHHHHH---HHHhh--hCCcEEEEcCCCCHHHHH
Q 015822 189 ---------FNSTLPLTHVDEKLCYQI---LHEYK--IHNAEVLFREDATVDDLI 229 (399)
Q Consensus 189 ---------li~DEpts~LD~~~v~~l---l~~l~--~~~~~v~vthd~~~~~~~ 229 (399)
+++||||.+||......+ ++.+- +.-+++++|||+.+..+.
T Consensus 164 RnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLl 218 (258)
T COG4107 164 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHh
Confidence 899999999998754444 44443 334899999999887754
No 368
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=9.2e-18 Score=182.57 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=123.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
|++|.+.. |+.|||||++||||||+++.|.+...| ..|.|.++|.++.-++.+-++ ..+|.+.
T Consensus 371 g~sl~i~~--G~~valVG~SGsGKST~i~LL~RfydP-----------~~G~V~idG~di~~~~~~~lr----~~iglV~ 433 (1228)
T KOG0055|consen 371 GVSLKIPS--GQTVALVGPSGSGKSTLIQLLARFYDP-----------TSGEVLIDGEDIRNLNLKWLR----SQIGLVS 433 (1228)
T ss_pred CeEEEeCC--CCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCceEEEcCccchhcchHHHH----hhcCeee
Confidence 78888888 789999999999999999999999854 999999999999988876554 3577777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHH-------------cCCcccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEA-------------VGLRLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~-------------~gi~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .+.|.+- .. ....+.+.+..+. ++-.....-.+||||||||++||
T Consensus 434 QePvlF~~tI~eNI~~G---~~-dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ 509 (1228)
T KOG0055|consen 434 QEPVLFATTIRENIRYG---KP-DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPK 509 (1228)
T ss_pred echhhhcccHHHHHhcC---CC-cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCC
Confidence 76533322 2333322 11 1112222222222 22244455567999999999999
Q ss_pred -eeeccCCCCCCHH---HHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh
Q 015822 189 -FNSTLPLTHVDEK---LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (399)
Q Consensus 189 -li~DEpts~LD~~---~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~ 253 (399)
|++||||++||.+ .|.+.|+......|.++|+|+++.-. ..+.|+|+.+.-++..
T Consensus 510 ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIr----------naD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 510 ILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIR----------NADKIAVMEEGKIVEQ 568 (1228)
T ss_pred EEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhh----------ccCEEEEEECCEEEEe
Confidence 9999999999987 46677777777779999999987644 2577888887765533
No 369
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.73 E-value=9.5e-18 Score=150.35 Aligned_cols=121 Identities=19% Similarity=0.126 Sum_probs=87.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+||||||||||||++.+ ..|.+.+++.. ... ......+..
T Consensus 13 ~isl~i~~--G~~~~l~G~nG~GKSTLl~~il~---------------~~G~v~~~~~~-~~~--------~~~~~~~~~ 66 (176)
T cd03238 13 NLDVSIPL--NVLVVVTGVSGSGKSTLVNEGLY---------------ASGKARLISFL-PKF--------SRNKLIFID 66 (176)
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHhh---------------cCCcEEECCcc-ccc--------ccccEEEEh
Confidence 67888888 77999999999999999999853 35666665431 000 000011111
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce-----------eeeccCCCC
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia-----------li~DEpts~ 197 (399)
| .+.|+.+++ .+++++..||+||+||++++ +++||||++
T Consensus 67 q---------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 67 Q---------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred H---------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 1 346777887 36888999999999999987 889999999
Q ss_pred CCHHHHHHHHHHhh----hCCcEEEEcCCCCH
Q 015822 198 VDEKLCYQILHEYK----IHNAEVLFREDATV 225 (399)
Q Consensus 198 LD~~~v~~ll~~l~----~~~~~v~vthd~~~ 225 (399)
||......+++.+. ...++|++||+...
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99986665555443 23589999999754
No 370
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.73 E-value=1.9e-17 Score=168.42 Aligned_cols=189 Identities=24% Similarity=0.304 Sum_probs=124.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCcccccccccc--CcccchhhccccC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE--GKGRGRQVIAVSK 138 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~--~~~~~~q~~~~~~ 138 (399)
+.+|+|+|+||||||||+|+|++.. +.++++|+||+++..+.+.++|.++.++||||+...... ..+ .......++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~g-i~~~~~~~~ 281 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLG-IEKSFKAIK 281 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHH-HHHHHHHHh
Confidence 5799999999999999999999986 468999999999999999999999999999998642210 000 012233457
Q ss_pred ChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEE
Q 015822 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (399)
Q Consensus 139 ~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~ 218 (399)
.+|++++|+|++.+...... ++ ..+
T Consensus 282 ~aD~il~V~D~s~~~s~~~~---~l--------------------------------------------~~~-------- 306 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF---LI--------------------------------------------IDL-------- 306 (442)
T ss_pred hCCEEEEEEECCCCCChhHH---HH--------------------------------------------HHH--------
Confidence 78999998887654221110 00 000
Q ss_pred EcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHcC--CCEEEecchhccchHHHHHHHHHHhCceEEEeCC
Q 015822 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKP 296 (399)
Q Consensus 219 vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~~--~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~~~ 296 (399)
. ...+|+++|+||+|+... +...+.+. .+++.+||++ .|++++.+.+.+.+... +..
T Consensus 307 --------------~--~~~~piIlV~NK~Dl~~~-~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~--~~~- 365 (442)
T TIGR00450 307 --------------N--KSKKPFILVLNKIDLKIN-SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF--YSK- 365 (442)
T ss_pred --------------h--hCCCCEEEEEECccCCCc-chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH--hcc-
Confidence 0 013699999999998643 22332221 2468899998 47776666665544321 111
Q ss_pred CCCCCCCCCcEEeecCCCCCCHHHHHHHHHHHHh
Q 015822 297 QGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLV 330 (399)
Q Consensus 297 ~~~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~ 330 (399)
.....+ ..++.+.||...++++...+...+.
T Consensus 366 --~~~~~~-~~~~~~~r~~~~l~~a~~~l~~~~~ 396 (442)
T TIGR00450 366 --ERVELD-DYLISSWQAMILLEKAIAQLQQFLS 396 (442)
T ss_pred --cccccc-cceEhHHHHHHHHHHHHHHHHHHHH
Confidence 001012 3455666899999988888875543
No 371
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.72 E-value=1.9e-17 Score=143.84 Aligned_cols=102 Identities=23% Similarity=0.270 Sum_probs=81.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||+|||||+++|+|...+ .+|.+.++|.. .+++.+
T Consensus 18 ~~~~~~~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~~~~---------------~i~~~~ 69 (144)
T cd03221 18 DISLTINP--GDRIGLVGRNGAGKSTLLKLIAGELEP-----------DEGIVTWGSTV---------------KIGYFE 69 (144)
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCeE---------------EEEEEc
Confidence 66787877 789999999999999999999999765 89999998741 011111
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~ 202 (399)
| ||+||+||++++ +++|||+++||...
T Consensus 70 ~--------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~ 105 (144)
T cd03221 70 Q--------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES 105 (144)
T ss_pred c--------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 1 899999999988 99999999999987
Q ss_pred HHHHHHHhh-hCCcEEEEcCCCCH
Q 015822 203 CYQILHEYK-IHNAEVLFREDATV 225 (399)
Q Consensus 203 v~~ll~~l~-~~~~~v~vthd~~~ 225 (399)
...+.+.+. ...+++++||+...
T Consensus 106 ~~~l~~~l~~~~~til~~th~~~~ 129 (144)
T cd03221 106 IEALEEALKEYPGTVILVSHDRYF 129 (144)
T ss_pred HHHHHHHHHHcCCEEEEEECCHHH
Confidence 666666665 34589999999654
No 372
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.72 E-value=1.4e-17 Score=177.98 Aligned_cols=148 Identities=14% Similarity=0.023 Sum_probs=100.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.+++. ..+++.+
T Consensus 470 ~isl~i~~--Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-----------~~G~i~~~~~---------------~~i~~v~ 521 (659)
T TIGR00954 470 SLSFEVPS--GNHLLICGPNGCGKSSLFRILGELWPV-----------YGGRLTKPAK---------------GKLFYVP 521 (659)
T ss_pred cceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEeecCC---------------CcEEEEC
Confidence 67777877 779999999999999999999998755 6687776431 1223333
Q ss_pred hhccccCC--hhhhHHHH---hcCCcHHHHHHHHHHHHHcCC--ccccc---------ccccchhhHhhcCce-------
Q 015822 132 QVIAVSKS--SDIVLMVL---DASKSEGHRQILTKELEAVGL--RLNKR---------PPQIYFKKKKTGGIS------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~---d~~~~~~~~~~i~~~L~~~gi--~~~~~---------~~~LS~g~kqr~~ia------- 188 (399)
|....+.. .|.+.+.. +...+....+.+.+.|+.+++ .++++ ...||+||+||+++|
T Consensus 522 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p 601 (659)
T TIGR00954 522 QRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP 601 (659)
T ss_pred CCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC
Confidence 33322222 12222110 000111123456777888887 33432 368999999999998
Q ss_pred --eeeccCCCCCCHHHHHHHHHHhhh-CCcEEEEcCCCCHHH
Q 015822 189 --FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVDD 227 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~ll~~l~~-~~~~v~vthd~~~~~ 227 (399)
+++||||++||.+....+.+.+.. ..++++++|+.....
T Consensus 602 ~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 602 QFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK 643 (659)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH
Confidence 999999999999977777776653 458999999987644
No 373
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.72 E-value=2.4e-17 Score=145.40 Aligned_cols=159 Identities=26% Similarity=0.396 Sum_probs=103.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcc-cchhhccc-cCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAV-SKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~-~~~q~~~~-~~~~d 141 (399)
+|+|+|.+|||||||+|+|++....++++||+|.++..+.+.+++..+.++||||.......... ...+.... ...+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 68999999999999999999988778889999999999999888999999999997432111000 00011101 11245
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++|+|++..... ..+....++..+.
T Consensus 82 ~~l~v~d~~~~~~~-------------------------------------------~~~~~~~~~~~l~---------- 108 (168)
T cd01897 82 AVLFLFDPSETCGY-------------------------------------------SLEEQLSLFEEIK---------- 108 (168)
T ss_pred cEEEEEeCCccccc-------------------------------------------chHHHHHHHHHHH----------
Confidence 66666666542110 0011111111111
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChhhHH---HHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD---KLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~---~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+....... .+.. ..+++++||+++.|++++.+.+.+.|
T Consensus 109 ------------~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 109 ------------PLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ------------hhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 001136999999999997554332 2222 23488999999999999999887754
No 374
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.71 E-value=2.4e-17 Score=188.51 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=125.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-C----------------------------------------
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEA-A---------------------------------------- 90 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~v-s---------------------------------------- 90 (399)
+++|++.+ |+++||||++|||||||++.|+|...|. +
T Consensus 1186 ~lsl~i~~--G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 (1466)
T PTZ00265 1186 DLTFSCDS--KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKE 1263 (1466)
T ss_pred CeeEEEcC--CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence 66777777 7799999999999999999999998651 1
Q ss_pred --ccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHc
Q 015822 91 --SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAV 166 (399)
Q Consensus 91 --~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~ 166 (399)
.-+-+|..|.+|.|.++|.++.-++...++ ..++++.|...++.. .++|.+.. . ....+.+.+.++..
T Consensus 1264 ~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR----~~i~~V~Qep~LF~gTIreNI~~g~---~-~at~eeI~~A~k~A 1335 (1466)
T PTZ00265 1264 GGSGEDSTVFKNSGKILLDGVDICDYNLKDLR----NLFSIVSQEPMLFNMSIYENIKFGK---E-DATREDVKRACKFA 1335 (1466)
T ss_pred cccccccccCCCCCeEEECCEEHHhCCHHHHH----hhccEeCCCCccccccHHHHHhcCC---C-CCCHHHHHHHHHHc
Confidence 112356667899999999999888865543 457788887766643 34444421 1 11223355555555
Q ss_pred CC-------------cccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHHHHHhh-h----CCcEEEE
Q 015822 167 GL-------------RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK-I----HNAEVLF 219 (399)
Q Consensus 167 gi-------------~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~ll~~l~-~----~~~~v~v 219 (399)
++ .+...-..||||||||++|| |++|||||+||.+.-..+.+.+. . ..|+|+|
T Consensus 1336 ~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI 1415 (1466)
T ss_pred CCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 43 23334568999999999999 99999999999986555554443 2 4599999
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
+|.+.... ....|+|+++.
T Consensus 1416 aHRlsti~----------~aD~Ivvl~~~ 1434 (1466)
T PTZ00265 1416 AHRIASIK----------RSDKIVVFNNP 1434 (1466)
T ss_pred echHHHHH----------hCCEEEEEeCC
Confidence 99986543 24678888863
No 375
>PRK13409 putative ATPase RIL; Provisional
Probab=99.71 E-value=1.2e-17 Score=175.96 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=98.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEE-----------ECCEeecccCccccccccccCccc
Q 015822 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-----------YNDTKIQLLDLPGIIEGASEGKGR 129 (399)
Q Consensus 61 ~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~-----------~~g~~i~~iD~~Gl~~~~~~~~~~ 129 (399)
.|+++||+|+|||||||||++|+|...| +.|.+. ++|.+++-.... +.. .....++
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~p-----------~~G~i~~~~~~~~~~~~~~G~~l~~~~~~-~~~-~~~~~~~ 164 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIP-----------NLGDYEEEPSWDEVLKRFRGTELQNYFKK-LYN-GEIKVVH 164 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccC-----------CCccccCCCcHHHHHHHhCChHHHHHHHH-Hhc-cCcceee
Confidence 4789999999999999999999998765 889886 677665321100 000 0011111
Q ss_pred chhhccccCCh---hhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 130 GRQVIAVSKSS---DIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 130 ~~q~~~~~~~~---d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
..|.....+.. .+.. .+.. ......+.++|+.+++ .+++++..||+||+||++|| +++||||
T Consensus 165 ~~q~~~~~p~~~~~tv~e-~l~~---~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPt 240 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRE-LLKK---VDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPT 240 (590)
T ss_pred cccchhhhhhhhcchHHH-HHHh---hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 12221111110 1111 1111 1223467888999998 57899999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHH
Q 015822 196 THVDEKLCYQILHEYK---IHNAEVLFREDATVD 226 (399)
Q Consensus 196 s~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~ 226 (399)
++||......+.+.+. ...++|+++||....
T Consensus 241 s~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l 274 (590)
T PRK13409 241 SYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVL 274 (590)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 9999986555554443 345899999997753
No 376
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.71 E-value=3.4e-17 Score=157.62 Aligned_cols=145 Identities=13% Similarity=0.148 Sum_probs=90.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|. +.++ +
T Consensus 55 ~vs~~i~~--Ge~~~liG~NGsGKSTLl~~I~Gl~~p-----------~~G~I~i~g~-i~yv----------------~ 104 (282)
T cd03291 55 NINLKIEK--GEMLAITGSTGSGKTSLLMLILGELEP-----------SEGKIKHSGR-ISFS----------------S 104 (282)
T ss_pred eeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCE-EEEE----------------e
Confidence 67777877 789999999999999999999998765 7899998873 2221 1
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHH-----HHHHHHHHcCC----cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQ-----ILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~-----~i~~~L~~~gi----~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+... ........ .+...+..+.. .+...+..||+||+||+++| +++
T Consensus 105 q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiL 183 (282)
T cd03291 105 QFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLL 183 (282)
T ss_pred CcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111111 111111000 00000000 01122222211 23345679999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHH----hhhCCcEEEEcCCCCHHH
Q 015822 192 TLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDD 227 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~----l~~~~~~v~vthd~~~~~ 227 (399)
||||++||......+++. +....+++++||+.....
T Consensus 184 DEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~ 223 (282)
T cd03291 184 DSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (282)
T ss_pred ECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH
Confidence 999999999876655543 233458999999976543
No 377
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.71 E-value=4.2e-17 Score=146.30 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=79.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhh
Q 015822 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (399)
Q Consensus 54 ~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~ 133 (399)
.|.+.+ |++++|+|+||||||||+++|+|...+ ..|.+.++|..+.++ +|.
T Consensus 19 ~~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~----------------~q~ 69 (177)
T cd03222 19 LGVVKE--GEVIGIVGPNGTGKTTAVKILAGQLIP-----------NGDNDEWDGITPVYK----------------PQY 69 (177)
T ss_pred CcEECC--CCEEEEECCCCChHHHHHHHHHcCCCC-----------CCcEEEECCEEEEEE----------------ccc
Confidence 366666 789999999999999999999999765 899999988653211 111
Q ss_pred ccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHHHH
Q 015822 134 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCY 204 (399)
Q Consensus 134 ~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~ 204 (399)
. .||+||+||++++ +++||||++||.....
T Consensus 70 ~-----------------------------------------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 70 I-----------------------------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred C-----------------------------------------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 0 0899999999988 9999999999998655
Q ss_pred HHHHHh---hh-C-CcEEEEcCCCCHH
Q 015822 205 QILHEY---KI-H-NAEVLFREDATVD 226 (399)
Q Consensus 205 ~ll~~l---~~-~-~~~v~vthd~~~~ 226 (399)
.+++.+ .. . .+++++||+....
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 444444 32 2 5899999997653
No 378
>PLN03232 ABC transporter C family member; Provisional
Probab=99.70 E-value=5.7e-17 Score=186.62 Aligned_cols=170 Identities=14% Similarity=0.116 Sum_probs=120.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++++ |++|||||++|||||||+++|.|...+ .+|.|.++|.++.-++...+ +..+++++
T Consensus 1254 ~isl~I~~--GekvaIVG~SGSGKSTL~~lL~rl~~p-----------~~G~I~IdG~di~~i~~~~l----R~~i~iVp 1316 (1495)
T PLN03232 1254 GLSFFVSP--SEKVGVVGRTGAGKSSMLNALFRIVEL-----------EKGRIMIDDCDVAKFGLTDL----RRVLSIIP 1316 (1495)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCceEEECCEEhhhCCHHHH----HhhcEEEC
Confidence 66777777 789999999999999999999999755 89999999999887765433 34567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+-..+ +.... ...+.+.+.|+..++ .+...-.+||+|||||++|| +
T Consensus 1317 Qdp~LF~g-TIr~NL-~~~~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~IL 1393 (1495)
T PLN03232 1317 QSPVLFSG-TVRFNI-DPFSE-HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKIL 1393 (1495)
T ss_pred CCCeeeCc-cHHHHc-CCCCC-CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 77665543 111111 21111 123345556665554 22333468999999999999 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||.++-..+.+.+. ...|+++|+|..+... ..+.|+|+++.-+.
T Consensus 1394 ILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~----------~~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1394 VLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTII----------DCDKILVLSSGQVL 1448 (1495)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH----------hCCEEEEEECCEEE
Confidence 9999999999986555555554 3459999999975533 24778888876554
No 379
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.70 E-value=6.4e-17 Score=151.79 Aligned_cols=89 Identities=33% Similarity=0.416 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccC-----cccchhhccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-----KGRGRQVIAV 136 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~-----~~~~~q~~~~ 136 (399)
..||+||+||+|||||.|.+.|.. .+|+..+.||+.-+.|.++-+..++.++||||++...... ..+.......
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a 152 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDA 152 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHH
Confidence 489999999999999999999998 6899999999999999999999999999999997543211 1111223345
Q ss_pred cCChhhhHHHHhcCC
Q 015822 137 SKSSDIVLMVLDASK 151 (399)
Q Consensus 137 ~~~~d~il~v~d~~~ 151 (399)
+++||+++.++|++.
T Consensus 153 ~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 153 AQNADCVVVVVDASA 167 (379)
T ss_pred HhhCCEEEEEEeccC
Confidence 677888888888874
No 380
>PLN03073 ABC transporter F family; Provisional
Probab=99.69 E-value=4.9e-17 Score=174.43 Aligned_cols=164 Identities=10% Similarity=-0.014 Sum_probs=102.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccc----------ccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG----------IIE 121 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~G----------l~~ 121 (399)
+++|.|.. |+++||||+|||||||||++|+|.... + .|..|.+.+.+..+...|+.- ...
T Consensus 195 ~isl~i~~--Ge~~gLvG~NGsGKSTLLr~l~g~~~~-----g---~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~ 264 (718)
T PLN03073 195 DASVTLAF--GRHYGLVGRNGTGKTTFLRYMAMHAID-----G---IPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQ 264 (718)
T ss_pred CCEEEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----C---CCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHH
Confidence 67777777 789999999999999999999997411 1 246777765443322111110 000
Q ss_pred ccccCcccchhhccccC---------------Chhh-------hHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccc
Q 015822 122 GASEGKGRGRQVIAVSK---------------SSDI-------VLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQ 176 (399)
Q Consensus 122 ~~~~~~~~~~q~~~~~~---------------~~d~-------il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~ 176 (399)
......++..|...... ..+. ++..++..+......++...|..+|+ ..++++..
T Consensus 265 ~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~ 344 (718)
T PLN03073 265 LLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKT 344 (718)
T ss_pred HHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhh
Confidence 00011112222110000 0000 00111111111234456778888888 36788999
Q ss_pred cchhhHhhcCce---------eeeccCCCCCCHHHHHHHHHHhh-hCCcEEEEcCCCCH
Q 015822 177 IYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFREDATV 225 (399)
Q Consensus 177 LS~g~kqr~~ia---------li~DEpts~LD~~~v~~ll~~l~-~~~~~v~vthd~~~ 225 (399)
||+||+||++|+ +++||||++||...+..+.+.+. +..++|++|||...
T Consensus 345 LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~ 403 (718)
T PLN03073 345 FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREF 403 (718)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 999999999998 99999999999998888777776 45699999999654
No 381
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=2.4e-16 Score=144.86 Aligned_cols=166 Identities=18% Similarity=0.172 Sum_probs=119.8
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+++||||+||||||||++.|+|...| ++|.+.++|.-..+++.. .|+.
T Consensus 44 ~disf~i~~--Ge~vGiiG~NGaGKSTLlkliaGi~~P-----------t~G~v~v~G~v~~li~lg---------~Gf~ 101 (249)
T COG1134 44 KDISFEIYK--GERVGIIGHNGAGKSTLLKLIAGIYKP-----------TSGKVKVTGKVAPLIELG---------AGFD 101 (249)
T ss_pred cCceEEEeC--CCEEEEECCCCCcHHHHHHHHhCccCC-----------CCceEEEcceEehhhhcc---------cCCC
Confidence 389999999 779999999999999999999999877 999999999765555431 1221
Q ss_pred hhhccccCChhhhHHH--HhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 131 RQVIAVSKSSDIVLMV--LDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v--~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
++ +...+++.+. +-+....+..+++++..+-.++ .++.|+...|-|++-|++++ |++||-++-
T Consensus 102 pe----lTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 102 PE----LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred cc----cchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 22 2344555443 2223334444555655555555 89999999999999999887 999999999
Q ss_pred CCHHHHH---HHHHHhh-hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 198 VDEKLCY---QILHEYK-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 198 LD~~~v~---~ll~~l~-~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
.|..-.+ +.+.++. ...++|+||||..... .+++.++.+.+.-+.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~---------~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIK---------QYCDRAIWLEHGQIR 226 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHH---------HhcCeeEEEeCCEEE
Confidence 9987444 3444443 3459999999976532 346777888876543
No 382
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.69 E-value=1.7e-16 Score=168.52 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=111.6
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.++++.+.+ |+.++|+|||||||||||++|+|...+- ....|.+.++|.++... ..+...++.
T Consensus 42 ~~vs~~i~~--Ge~~aI~G~sGsGKSTLL~~L~g~~~~~--------~~~~G~i~~~g~~~~~~-------~~~~~i~yv 104 (617)
T TIGR00955 42 KNVSGVAKP--GELLAVMGSSGAGKTTLMNALAFRSPKG--------VKGSGSVLLNGMPIDAK-------EMRAISAYV 104 (617)
T ss_pred cCCEEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCCC--------CcceeEEEECCEECCHH-------HHhhhceee
Confidence 378888888 7899999999999999999999986430 11479999999886421 122345666
Q ss_pred hhhccccCC---hhhhHHHHhcC-----CcHHHHHHHHHHHHHcCC--ccccccc------ccchhhHhhcCce------
Q 015822 131 RQVIAVSKS---SDIVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRPP------QIYFKKKKTGGIS------ 188 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~d~~-----~~~~~~~~i~~~L~~~gi--~~~~~~~------~LS~g~kqr~~ia------ 188 (399)
.|....+.. .+.+.+..... ...+....+.+.++.+|+ ..+..++ .|||||+||+.||
T Consensus 105 ~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~ 184 (617)
T TIGR00955 105 QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184 (617)
T ss_pred ccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence 665444443 33333322211 122344568889999998 4566655 5999999999998
Q ss_pred ---eeeccCCCCCCHHHHHHHHHHhh---h-CCcEEEEcCCCC
Q 015822 189 ---FNSTLPLTHVDEKLCYQILHEYK---I-HNAEVLFREDAT 224 (399)
Q Consensus 189 ---li~DEpts~LD~~~v~~ll~~l~---~-~~~~v~vthd~~ 224 (399)
+++||||++||......+++.++ . ..++++++|+..
T Consensus 185 p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~ 227 (617)
T TIGR00955 185 PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS 227 (617)
T ss_pred CCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 89999999999986555555443 3 348999999986
No 383
>PLN03130 ABC transporter C family member; Provisional
Probab=99.69 E-value=1.1e-16 Score=184.73 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=121.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++|||||++|||||||+++|.|...+ .+|.|.++|.++.-++...+ +..+++++
T Consensus 1257 ~is~~I~~--GekVaIVGrSGSGKSTLl~lL~rl~~p-----------~~G~I~IDG~dI~~i~l~~L----R~~IsiVp 1319 (1622)
T PLN03130 1257 GLSFEISP--SEKVGIVGRTGAGKSSMLNALFRIVEL-----------ERGRILIDGCDISKFGLMDL----RKVLGIIP 1319 (1622)
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCcCCC-----------CCceEEECCEecccCCHHHH----HhccEEEC
Confidence 66777777 789999999999999999999999755 89999999999987765444 34567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+-..+ +.... ...+.+.+.|+..++ .+...-.+||+|||||++|| +
T Consensus 1320 Qdp~LF~G-TIreNL-d~~~~-~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~IL 1396 (1622)
T PLN03130 1320 QAPVLFSG-TVRFNL-DPFNE-HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKIL 1396 (1622)
T ss_pred CCCccccc-cHHHHh-CcCCC-CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 77665544 111111 22211 123345666666554 22333468999999999999 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||.++-..+.+.+. ...|+++|+|..+.... .+.|+|+.+.-+.
T Consensus 1397 ILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~----------~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1397 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID----------CDRILVLDAGRVV 1451 (1622)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh----------CCEEEEEECCEEE
Confidence 9999999999986555544443 34599999999776432 4678888876554
No 384
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1e-16 Score=141.45 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=106.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCccc-c
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-G 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~-~ 130 (399)
+++|.+.. |+.+.|.||||+||||||++|+|...| ..|.|.++|.++...- +..+...-+ +
T Consensus 20 ~L~f~l~~--Ge~~~i~G~NG~GKTtLLRilaGLl~p-----------~~G~v~~~~~~i~~~~-----~~~~~~l~yLG 81 (209)
T COG4133 20 DLSFTLNA--GEALQITGPNGAGKTTLLRILAGLLRP-----------DAGEVYWQGEPIQNVR-----ESYHQALLYLG 81 (209)
T ss_pred ceeEEEcC--CCEEEEECCCCCcHHHHHHHHHcccCC-----------CCCeEEecCCCCccch-----hhHHHHHHHhh
Confidence 67888888 789999999999999999999999866 8999999988775421 000000000 1
Q ss_pred hhh--ccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 131 RQV--IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 131 ~q~--~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
.+. -..+.-.+++-|..+..+. .....+.+.|+.+|+ ..+.++.+||-||++|+++| .++|||+++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~-~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta 160 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGS-GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA 160 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCC-CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence 110 0011112333333332222 234568889999999 78899999999999999999 899999999
Q ss_pred CCHHHHHHHHHHhh----hCCcEEEEcCCCC
Q 015822 198 VDEKLCYQILHEYK----IHNAEVLFREDAT 224 (399)
Q Consensus 198 LD~~~v~~ll~~l~----~~~~~v~vthd~~ 224 (399)
||.+.+..+-..+. ..+-++..||...
T Consensus 161 LDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 161 LDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 99986555444442 3346777888643
No 385
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.69 E-value=1e-16 Score=159.61 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=121.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+-+|||||+|||||||.++|.|...| ..|.+.++|.++..+|--. ..+.+||.+
T Consensus 354 ~isF~l~~--G~~lgIIGPSgSGKSTLaR~lvG~w~p-----------~~G~VRLDga~l~qWd~e~----lG~hiGYLP 416 (580)
T COG4618 354 GISFALQA--GEALGIIGPSGSGKSTLARLLVGIWPP-----------TSGSVRLDGADLRQWDREQ----LGRHIGYLP 416 (580)
T ss_pred cceeEecC--CceEEEECCCCccHHHHHHHHHccccc-----------CCCcEEecchhhhcCCHHH----hccccCcCc
Confidence 88999999 779999999999999999999999876 8999999999998888532 345678889
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....++. +++|.-+-+. .+.+.+.+.....|. .+..--..||+|||||+++|
T Consensus 417 QdVeLF~GTIaeNIaRf~~~----~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 417 QDVELFDGTIAENIARFGEE----ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred ccceecCCcHHHHHHhcccc----CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 98877765 4444332211 122222222222221 33344579999999999998
Q ss_pred -eeeccCCCCCCHH---HHHHHHHHhhhC-CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 189 -FNSTLPLTHVDEK---LCYQILHEYKIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 189 -li~DEpts~LD~~---~v~~ll~~l~~~-~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
+++|||-++||.+ .+.+.+...+.. .++|+|+|..+.-..+ +.|.|++-.
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~----------Dkilvl~~G 547 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV----------DKILVLQDG 547 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc----------ceeeeecCC
Confidence 9999999999987 455556666644 5899999998876543 456676644
No 386
>PTZ00243 ABC transporter; Provisional
Probab=99.69 E-value=1.1e-16 Score=184.41 Aligned_cols=170 Identities=18% Similarity=0.136 Sum_probs=122.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|+|.+ |++|||||++|||||||+++|+|...+ ..|.|.++|.++.-++...+ +..+++++
T Consensus 1328 ~vsf~I~~--GekVaIVGrTGSGKSTLl~lLlrl~~p-----------~~G~I~IDG~di~~i~l~~L----R~~I~iVp 1390 (1560)
T PTZ00243 1328 GVSFRIAP--REKVGIVGRTGSGKSTLLLTFMRMVEV-----------CGGEIRVNGREIGAYGLREL----RRQFSMIP 1390 (1560)
T ss_pred cceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccCCHHHH----HhcceEEC
Confidence 67777777 789999999999999999999999755 89999999999987765433 34577788
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--c-----------ccccccccchhhHhhcCce----------
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS---------- 188 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~-----------~~~~~~~LS~g~kqr~~ia---------- 188 (399)
|....+.. .+-..+ +... ....+.+.+.|+..++ . +...-.+||+|||||++||
T Consensus 1391 Qdp~LF~g-TIreNI-dp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~I 1467 (1560)
T PTZ00243 1391 QDPVLFDG-TVRQNV-DPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467 (1560)
T ss_pred CCCccccc-cHHHHh-Cccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCE
Confidence 87766654 121122 2221 1223456777777665 1 2223368999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
|++||||++||.+.-..+.+.+. ...|+|+|+|.+.... ..+.|+|+++.-+.
T Consensus 1468 LlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~----------~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1468 ILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA----------QYDKIIVMDHGAVA 1523 (1560)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH----------hCCEEEEEECCEEE
Confidence 99999999999986555554443 3459999999986543 24678888876544
No 387
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.68 E-value=2.2e-16 Score=180.39 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=109.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++++.+.+ |+.+||+|+||||||||+|+|+|...+ -.+.+|.+.++|.++.. ..+...++..
T Consensus 781 ~vs~~i~~--Ge~~aI~G~sGaGKSTLL~~Lag~~~~--------g~~~~G~I~i~G~~~~~--------~~~~~i~yv~ 842 (1394)
T TIGR00956 781 NVDGWVKP--GTLTALMGASGAGKTTLLNVLAERVTT--------GVITGGDRLVNGRPLDS--------SFQRSIGYVQ 842 (1394)
T ss_pred CCEEEEEC--CEEEEEECCCCCCHHHHHHHHhCCCCC--------CCcceeEEEECCEECCh--------hhhcceeeec
Confidence 67777777 789999999999999999999998642 02378999999988631 1123456666
Q ss_pred hhccccCCh---hhhHHHHhcC-----CcHHHHHHHHHHHHHcCC--ccccccc----ccchhhHhhcCce---------
Q 015822 132 QVIAVSKSS---DIVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRPP----QIYFKKKKTGGIS--------- 188 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~-----~~~~~~~~i~~~L~~~gi--~~~~~~~----~LS~g~kqr~~ia--------- 188 (399)
|....+... +.+.+..... ...+..+.+++.|+.+++ ..++.+. .||+||+||+.|+
T Consensus 843 Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~ 922 (1394)
T TIGR00956 843 QQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKL 922 (1394)
T ss_pred ccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCe
Confidence 643333332 3333222111 112334568889999998 4566665 7999999999887
Q ss_pred -eeeccCCCCCCHHHH---HHHHHHhhhC-CcEEEEcCCCCH
Q 015822 189 -FNSTLPLTHVDEKLC---YQILHEYKIH-NAEVLFREDATV 225 (399)
Q Consensus 189 -li~DEpts~LD~~~v---~~ll~~l~~~-~~~v~vthd~~~ 225 (399)
+++||||++||.... .++|+.+... .++|+++|++..
T Consensus 923 iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 923 LLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 789999999999854 4455555433 489999999875
No 388
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.68 E-value=9.3e-17 Score=139.16 Aligned_cols=154 Identities=27% Similarity=0.317 Sum_probs=106.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCccccccccccC-cccchhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~-~~~~~q~~~~~~~ 139 (399)
|.+|+++|++|||||||+|+|++... .++++|+||.++..+.+.+++.++.++||||+......- ..........+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 46899999999999999999999874 578899999999999999999999999999975432110 0001122233456
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++++|+..+...... .++.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~----------------------------------------------~~~~----------- 103 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDL----------------------------------------------EILE----------- 103 (157)
T ss_pred CCEEEEEEECCCCCCHHHH----------------------------------------------HHHH-----------
Confidence 7777777776543211110 0000
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHcCCCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. ...+|+++|+||+|+.............+++++||.++.|+++|.+.|.+.+
T Consensus 104 -----------~----~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 104 -----------L----PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -----------h----hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 0 1137999999999998554431112234689999999999999999987654
No 389
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=1.8e-16 Score=161.77 Aligned_cols=205 Identities=22% Similarity=0.265 Sum_probs=132.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCccc----chhhccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAV 136 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~----~~q~~~~ 136 (399)
..+|+|+|.||+|||||+|+|+|.. ..++++|+||++.....+.++|..+.++||||+....+...+. .......
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~ 252 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKA 252 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHH
Confidence 4689999999999999999999987 4689999999999988888999999999999986543221111 0112234
Q ss_pred cCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcE
Q 015822 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (399)
Q Consensus 137 ~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~ 216 (399)
++.+|++++|+|+..+....+. .++.
T Consensus 253 ~~~ad~~ilViD~~~~~~~~~~----------------------------------------------~i~~-------- 278 (435)
T PRK00093 253 IERADVVLLVIDATEGITEQDL----------------------------------------------RIAG-------- 278 (435)
T ss_pred HHHCCEEEEEEeCCCCCCHHHH----------------------------------------------HHHH--------
Confidence 5667888888877654221110 0000
Q ss_pred EEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH----H------cCCCEEEecchhccchHHHHHHHHHH
Q 015822 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL----A------RQPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 217 v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l----~------~~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
.+. ...+|+++|+||+|+...+..+.+ . ...+++++||+++.|++++.+.+.+.
T Consensus 279 --------------~~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 279 --------------LAL--EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred --------------HHH--HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 000 113799999999999854332222 1 13468999999999999988776543
Q ss_pred hCceE--E--------------EeCCC---CC--------CCCCCCcEEeecCCCCCCHHHHHHHHHHHHhhccceeEEe
Q 015822 287 MGLVR--V--------------YTKPQ---GQ--------QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVW 339 (399)
Q Consensus 287 l~~i~--~--------------~~~~~---~~--------~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~~w 339 (399)
..... + ...++ |. .....+|.++-. ......+...+.++|.+.|+.++.+
T Consensus 343 ~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~---~n~~~~~~~~y~~~l~~~~r~~~~~ 419 (435)
T PRK00093 343 YENANRRISTSVLNRVLEEAVERHPPPLVKGRRLKIKYATQVGTNPPTFVLF---VNDPELLPFSYKRYLENQLREAFDF 419 (435)
T ss_pred HHHHcCcCChHHHHHHHHHHHHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEE---eCCcccCCHHHHHHHHHHHHHHcCC
Confidence 32100 0 00000 00 012233545545 5556677788888888888888763
No 390
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.67 E-value=1.1e-16 Score=163.00 Aligned_cols=155 Identities=25% Similarity=0.249 Sum_probs=110.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCcccccccccc-CcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~-~~~~~~q~~~~~~~~d 141 (399)
+|+|||.||||||||+|.|++.. +.++++|++|+++..+.+.++|..+.++||||+...... ...+..+....++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 48999999999999999999987 468999999999999999999999999999997432110 0111233444567788
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++|+|+......... .+..+++.
T Consensus 81 ~vl~vvD~~~~~~~~d~-------------------------------------------~i~~~l~~------------ 105 (429)
T TIGR03594 81 VILFVVDGREGLTPEDE-------------------------------------------EIAKWLRK------------ 105 (429)
T ss_pred EEEEEEeCCCCCCHHHH-------------------------------------------HHHHHHHH------------
Confidence 88888887653211110 01111111
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChhh-HHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
..+|+++|+||+|+...+. ...+.+ ..+++++||.++.|+++|++.+.+.+.
T Consensus 106 ---------------~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 106 ---------------SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred ---------------hCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 1379999999999875432 223332 346899999999999999999988774
No 391
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.67 E-value=2.7e-16 Score=181.41 Aligned_cols=170 Identities=14% Similarity=0.042 Sum_probs=120.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++++ |++|||||++|||||||+++|.+...+ ..|.|.++|.++.-++...+ +..+++++
T Consensus 1304 ~is~~I~~--GekiaIVGrTGsGKSTL~~lL~rl~~~-----------~~G~I~IdG~dI~~i~~~~L----R~~i~iVp 1366 (1522)
T TIGR00957 1304 HINVTIHG--GEKVGIVGRTGAGKSSLTLGLFRINES-----------AEGEIIIDGLNIAKIGLHDL----RFKITIIP 1366 (1522)
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCccC-----------CCCeEEECCEEccccCHHHH----HhcCeEEC
Confidence 67777877 789999999999999999999998754 89999999999987765433 34567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+-.. +|..+. ...+.+.+.|+..++ .+...-..||+|||||++|| +
T Consensus 1367 Qdp~LF~g-TIr~N-Ldp~~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1443 (1522)
T TIGR00957 1367 QDPVLFSG-SLRMN-LDPFSQ-YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKIL 1443 (1522)
T ss_pred CCCcccCc-cHHHH-cCcccC-CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 77666654 11111 222221 122345556666554 22333467999999999999 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||.++-..+.+.+. .+.|+++|+|+..... ..+.|+|+.+.-+.
T Consensus 1444 iLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~----------~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1444 VLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM----------DYTRVIVLDKGEVA 1498 (1522)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------hCCEEEEEECCEEE
Confidence 9999999999986555555443 3459999999976533 24678888876544
No 392
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.67 E-value=6.4e-16 Score=135.72 Aligned_cols=178 Identities=21% Similarity=0.207 Sum_probs=130.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
.+||.+++ +..+||+|.||||||||.++|+|..+| ++|.+.++|.++.+-|-. .....+.+.+
T Consensus 31 ~vSFtL~~--~QTlaiIG~NGSGKSTLakMlaGmi~P-----------TsG~il~n~~~L~~~Dy~----~R~k~IRMiF 93 (267)
T COG4167 31 PVSFTLRE--GQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGEILINDHPLHFGDYS----FRSKRIRMIF 93 (267)
T ss_pred ceEEEecC--CcEEEEEccCCCcHhHHHHHHhcccCC-----------CCceEEECCccccccchH----hhhhheeeee
Confidence 57888888 779999999999999999999999876 999999999999887742 2233455566
Q ss_pred hhccccCChh-hhHHHHhc-------CCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKSSD-IVLMVLDA-------SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~~d-~il~v~d~-------~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|..+..-+.. .|-.++|+ ..+....+++.+-|..+|+ ..+-++..||.|||||+++| ++.
T Consensus 94 QDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIa 173 (267)
T COG4167 94 QDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIA 173 (267)
T ss_pred cCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEe
Confidence 6554333322 22233333 1234456678899999999 57788999999999999998 889
Q ss_pred ccCCCCCCHHH---HHHHHHHhhh-CC-cEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh
Q 015822 192 TLPLTHVDEKL---CYQILHEYKI-HN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (399)
Q Consensus 192 DEpts~LD~~~---v~~ll~~l~~-~~-~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~ 255 (399)
||.+++||... +..++-+++. .+ +-++|+.++.+...+ ...++|+...+++...+
T Consensus 174 DeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi---------~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHI---------SDQVLVMHEGEVVERGS 233 (267)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhh---------cccEEEEecCceeecCC
Confidence 99999999874 4444444542 23 778898887764422 36788999888764433
No 393
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=2.5e-16 Score=162.30 Aligned_cols=156 Identities=24% Similarity=0.346 Sum_probs=108.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCcc--cch--hhccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--RGR--QVIAV 136 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~--~~~--q~~~~ 136 (399)
..+|+|+|.||||||||+|+|++.. ..++++|+||+++....+.++|.++.++||||+.+......+ +.. .....
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~ 290 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAA 290 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHH
Confidence 3589999999999999999999987 468999999999999999999999999999998643221111 110 01123
Q ss_pred cCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcE
Q 015822 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (399)
Q Consensus 137 ~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~ 216 (399)
++.+|++++|+|++......+. .++.
T Consensus 291 i~~ad~vilV~Da~~~~s~~~~----------------------------------------------~~~~-------- 316 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQDQ----------------------------------------------RVLS-------- 316 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHHH----------------------------------------------HHHH--------
Confidence 5678888888887654221110 0000
Q ss_pred EEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhH----HHH----H--cCCCEEEecchhccchHHHHHHHHHH
Q 015822 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKL----A--RQPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 217 v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~----~~l----~--~~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
.+. ...+|+|+|+||+|+...... ..+ . .+.+++++||++|.|+++|.+.+.+.
T Consensus 317 --------------~~~--~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~ 380 (472)
T PRK03003 317 --------------MVI--EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETA 380 (472)
T ss_pred --------------HHH--HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 000 123799999999999753211 111 1 23468999999999999988777654
Q ss_pred h
Q 015822 287 M 287 (399)
Q Consensus 287 l 287 (399)
+
T Consensus 381 ~ 381 (472)
T PRK03003 381 L 381 (472)
T ss_pred H
Confidence 4
No 394
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.66 E-value=1.6e-16 Score=138.36 Aligned_cols=148 Identities=25% Similarity=0.326 Sum_probs=103.6
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccC--cccchhhccccCChhhhH
Q 015822 67 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGRGRQVIAVSKSSDIVL 144 (399)
Q Consensus 67 lvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~--~~~~~q~~~~~~~~d~il 144 (399)
|+|.+|||||||+|+++|....++++|+||+++..+.+.++|..+.++||||........ ..+...+... ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 589999999999999999887788999999999999999999999999999975422110 0111222212 5788888
Q ss_pred HHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCC
Q 015822 145 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 224 (399)
Q Consensus 145 ~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~ 224 (399)
+++|+......... +..
T Consensus 80 ~v~d~~~~~~~~~~------------------------------------------------~~~--------------- 96 (158)
T cd01879 80 NVVDATNLERNLYL------------------------------------------------TLQ--------------- 96 (158)
T ss_pred EEeeCCcchhHHHH------------------------------------------------HHH---------------
Confidence 88887653211110 000
Q ss_pred HHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 225 VDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 225 ~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
+. ...+|.++|+||+|+.... +...+.. ..+++++||.++.|++++.+.+.+.+
T Consensus 97 -------~~--~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 97 -------LL--ELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred -------HH--HcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 00 0136999999999987432 2223322 23589999999999999998887654
No 395
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.66 E-value=3.2e-16 Score=159.61 Aligned_cols=203 Identities=27% Similarity=0.285 Sum_probs=132.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCccc----chhhcccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAVS 137 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~----~~q~~~~~ 137 (399)
.+++++|.+|+|||||+|+|+|.. ..++++|+||+++....+.++|..+.++||||+.......... ..+....+
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~ 252 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAI 252 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHH
Confidence 589999999999999999999987 4589999999999999999999999999999986533211000 01223346
Q ss_pred CChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEE
Q 015822 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (399)
Q Consensus 138 ~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v 217 (399)
+.+|++++|+|+..+....+. .++.
T Consensus 253 ~~ad~~ilV~D~~~~~~~~~~----------------------------------------------~~~~--------- 277 (429)
T TIGR03594 253 ERADVVLLVLDATEGITEQDL----------------------------------------------RIAG--------- 277 (429)
T ss_pred HhCCEEEEEEECCCCccHHHH----------------------------------------------HHHH---------
Confidence 778888888887654221110 0000
Q ss_pred EEcCCCCHHHHHHHHhhccccccEEEEEecCCCC-ChhhHHH----HH------cCCCEEEecchhccchHHHHHHHHHH
Q 015822 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVDK----LA------RQPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 218 ~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~-~~~~~~~----l~------~~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
.+. ...+|+++|+||+|+. ..+..+. +. ...+++++||++|.|++++.+.+.+.
T Consensus 278 -------------~~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 278 -------------LIL--EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred -------------HHH--HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 000 1136999999999997 4332222 21 12468999999999999988776553
Q ss_pred hCce--EEEe--------------CCC---CC--------CCCCCCcEEeecCCCCCCHHHHHHHHHHHHhhccceeEE
Q 015822 287 MGLV--RVYT--------------KPQ---GQ--------QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLV 338 (399)
Q Consensus 287 l~~i--~~~~--------------~~~---~~--------~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~~ 338 (399)
.... ++-| .++ |. .....+|.++-. ......+...+.++|.+.|+.++.
T Consensus 343 ~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~---~n~~~~~~~~y~~~l~~~~~~~~~ 418 (429)
T TIGR03594 343 YENANRRISTSKLNRVLEEAVAAHPPPLVNGRRLKIKYATQVGTNPPTFVLF---GNRPELLPFSYKRYLENQFREAFG 418 (429)
T ss_pred HHHhcCcCCHHHHHHHHHHHHHcCCCCCCCCceeeEEEEECCCCCCCEEEEE---EcCcccCCHHHHHHHHHHHHHhcC
Confidence 3210 0000 000 00 012233555555 556677788888888888888776
No 396
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=4.4e-16 Score=136.88 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=83.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||+|||||+++|+|...+ ..|.+.++|.++...+.. .....+++.
T Consensus 17 ~~~~~i~~--g~~~~i~G~nGsGKStll~~l~g~~~~-----------~~G~i~~~~~~~~~~~~~----~~~~~i~~~- 78 (157)
T cd00267 17 NVSLTLKA--GEIVALVGPNGSGKSTLLRAIAGLLKP-----------TSGEILIDGKDIAKLPLE----ELRRRIGYV- 78 (157)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccCCHH----HHHhceEEE-
Confidence 56777777 779999999999999999999998754 789999998765422100 000011111
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHH
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~ 202 (399)
.+||+||++|+.++ +++||||++||...
T Consensus 79 -------------------------------------------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~ 115 (157)
T cd00267 79 -------------------------------------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS 115 (157)
T ss_pred -------------------------------------------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 11899999999888 99999999999886
Q ss_pred HHHHHHHh---hhC-CcEEEEcCCCCHHH
Q 015822 203 CYQILHEY---KIH-NAEVLFREDATVDD 227 (399)
Q Consensus 203 v~~ll~~l---~~~-~~~v~vthd~~~~~ 227 (399)
...+.+.+ ... .+++++||+.....
T Consensus 116 ~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 116 RERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 55554444 333 48999999976543
No 397
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.66 E-value=1.6e-16 Score=137.82 Aligned_cols=151 Identities=25% Similarity=0.275 Sum_probs=102.7
Q ss_pred EEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccc-cCcccchhhccccCChhhh
Q 015822 66 ALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-EGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 66 alvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~-~~~~~~~q~~~~~~~~d~i 143 (399)
+|+|.+|||||||+|.|++.. ..++++|+||++.....+.+++..+.++||||+..... .......+....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 589999999999999999976 35788999999999999999999999999999864321 0000111222345667777
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCC
Q 015822 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (399)
Q Consensus 144 l~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~ 223 (399)
++++|+......... .+...+.
T Consensus 81 i~v~d~~~~~~~~~~-------------------------------------------~~~~~~~--------------- 102 (157)
T cd01894 81 LFVVDGREGLTPADE-------------------------------------------EIAKYLR--------------- 102 (157)
T ss_pred EEEEeccccCCccHH-------------------------------------------HHHHHHH---------------
Confidence 777776432111000 0001111
Q ss_pred CHHHHHHHHhhccccccEEEEEecCCCCChhhH-HHHHc--CCCEEEecchhccchHHHHHHHHHH
Q 015822 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV-DKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 224 ~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~-~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
....|+++|+||+|+...... ..+.. ..+++++||+++.|++++.+.+.+.
T Consensus 103 ------------~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 103 ------------KSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ------------hcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 012699999999999854432 22222 2357999999999999999988764
No 398
>PLN03140 ABC transporter G family member; Provisional
Probab=99.66 E-value=4.3e-16 Score=177.82 Aligned_cols=156 Identities=15% Similarity=0.083 Sum_probs=108.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++++.+.+ |+.++|+|+||||||||||+|+|...+ + +.+|.+.++|.+.... ......++..
T Consensus 898 ~vs~~i~~--Gel~aL~G~sGaGKTTLL~~LaG~~~~-----g----~~~G~I~inG~~~~~~-------~~~~~igyv~ 959 (1470)
T PLN03140 898 EVTGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTG-----G----YIEGDIRISGFPKKQE-------TFARISGYCE 959 (1470)
T ss_pred CcEEEEEC--CeEEEEECCCCCCHHHHHHHHcCCCCC-----C----cccceEEECCccCChH-------HhhhheEEEc
Confidence 67777877 789999999999999999999998531 1 2579999999765310 1122356666
Q ss_pred hhccccCChh---hhHHHHhcC-----CcHHHHHHHHHHHHHcCC--cccccc-----cccchhhHhhcCce--------
Q 015822 132 QVIAVSKSSD---IVLMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRP-----PQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~~d---~il~v~d~~-----~~~~~~~~i~~~L~~~gi--~~~~~~-----~~LS~g~kqr~~ia-------- 188 (399)
|....+.... .+.+..... ...+..+.+++.|+.+++ ..++.+ ..||+|||||+.|+
T Consensus 960 Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~ 1039 (1470)
T PLN03140 960 QNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPS 1039 (1470)
T ss_pred cccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCC
Confidence 6544444333 233222111 112234568889999998 445554 58999999999998
Q ss_pred -eeeccCCCCCCHHHHHHHH---HHhhh-CCcEEEEcCCCCH
Q 015822 189 -FNSTLPLTHVDEKLCYQIL---HEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll---~~l~~-~~~~v~vthd~~~ 225 (399)
+++||||++||......++ +.+.. ..++|+++|+...
T Consensus 1040 lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140 1040 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081 (1470)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 9999999999998555544 44443 3489999999874
No 399
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.66 E-value=2.2e-16 Score=169.94 Aligned_cols=153 Identities=23% Similarity=0.321 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCc--ccchh---hcccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQ---VIAVS 137 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~--~~~~q---~~~~~ 137 (399)
.+|+|+|.||||||||||+|+|....++|+||||++...|.+.+++.++.++||||......... ....+ .....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 47999999999999999999999888999999999999999999999999999999864321100 00001 11123
Q ss_pred CChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEE
Q 015822 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (399)
Q Consensus 138 ~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v 217 (399)
..+|++++|+|+++........ ..+.
T Consensus 84 ~~aD~vI~VvDat~ler~l~l~-~ql~----------------------------------------------------- 109 (772)
T PRK09554 84 GDADLLINVVDASNLERNLYLT-LQLL----------------------------------------------------- 109 (772)
T ss_pred cCCCEEEEEecCCcchhhHHHH-HHHH-----------------------------------------------------
Confidence 4678888888876532211100 0000
Q ss_pred EEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 218 ~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
...+|+++|+||+|+.... +.+.+.+ ..+++++||.++.|+++|.+.+.+..
T Consensus 110 ------------------e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 110 ------------------ELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ------------------HcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 0136999999999986332 2334432 24689999999999999999998754
No 400
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=2.3e-16 Score=162.52 Aligned_cols=155 Identities=22% Similarity=0.233 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCc--ccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~--~~~~q~~~~~~~ 139 (399)
.+|+|||.||||||||||.|+|.. +.+++.|++|++...+.+.++|..+.++||||+..... .. .+..+....++.
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK-GLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch-hHHHHHHHHHHHHHHh
Confidence 489999999999999999999976 46889999999999999999999999999999753211 11 112233345678
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|++....... . .+...++
T Consensus 118 aD~il~VvD~~~~~s~~~--~-----------------------------------------~i~~~l~----------- 143 (472)
T PRK03003 118 ADAVLFVVDATVGATATD--E-----------------------------------------AVARVLR----------- 143 (472)
T ss_pred CCEEEEEEECCCCCCHHH--H-----------------------------------------HHHHHHH-----------
Confidence 999999999875421110 0 0111111
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-hHHHHH--cCCCEEEecchhccchHHHHHHHHHHhC
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-~~~~l~--~~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
...+|+++|+||+|+...+ +...+. .....+++||++|.|+++|++.+.+.+.
T Consensus 144 ----------------~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 144 ----------------RSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred ----------------HcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcc
Confidence 1137999999999986422 222222 2334689999999999999999887663
No 401
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=3.5e-16 Score=133.30 Aligned_cols=157 Identities=22% Similarity=0.305 Sum_probs=111.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.|.+ |++|.|+||+||||||||..+.|....- | ..+|.+.+++.++..+.+ ..+.+|+.+
T Consensus 20 ~~n~Tia~--GeivtlMGPSGcGKSTLls~~~G~La~~----F----~~~G~~~l~~~~l~~lPa------~qRq~GiLF 83 (213)
T COG4136 20 NVNFTIAK--GEIVTLMGPSGCGKSTLLSWMIGALAGQ----F----SCTGELWLNEQRLDMLPA------AQRQIGILF 83 (213)
T ss_pred eeeEEecC--CcEEEEECCCCccHHHHHHHHHhhcccC----c----ceeeEEEECCeeccccch------hhhheeeee
Confidence 68888888 7899999999999999999999987541 1 168999999998866532 334566667
Q ss_pred hhccccCChhh---hHHHHhcCC-cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCC
Q 015822 132 QVIAVSKSSDI---VLMVLDASK-SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (399)
Q Consensus 132 q~~~~~~~~d~---il~v~d~~~-~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts 196 (399)
|..-.+++..+ +++.+..+- .......+...|++.|+ ...+.|..|||||+.|+++- +++|||+|
T Consensus 84 QD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 84 QDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred cccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 76655655433 222222221 12334456788999998 78899999999999998865 89999999
Q ss_pred CCCHH---HHHH-HHHHhhhCC-cEEEEcCCCC
Q 015822 197 HVDEK---LCYQ-ILHEYKIHN-AEVLFREDAT 224 (399)
Q Consensus 197 ~LD~~---~v~~-ll~~l~~~~-~~v~vthd~~ 224 (399)
.||.. ..++ ++.+....+ ..+.||||..
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99976 2222 233333222 5678888754
No 402
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.65 E-value=1.6e-16 Score=135.98 Aligned_cols=120 Identities=21% Similarity=0.221 Sum_probs=84.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|.++...+... ....+++..
T Consensus 3 ~v~~~i~~--g~~~~i~G~nGsGKStLl~~l~g~~~~-----------~~G~i~~~~~~~~~~~~~~----~~~~i~~~~ 65 (137)
T PF00005_consen 3 NVSLEIKP--GEIVAIVGPNGSGKSTLLKALAGLLPP-----------DSGSILINGKDISDIDIEE----LRRRIGYVP 65 (137)
T ss_dssp EEEEEEET--TSEEEEEESTTSSHHHHHHHHTTSSHE-----------SEEEEEETTEEGTTSHHHH----HHHTEEEEE
T ss_pred ceEEEEcC--CCEEEEEccCCCccccceeeecccccc-----------ccccccccccccccccccc----ccccccccc
Confidence 46777777 779999999999999999999999755 8999999999886532211 122334444
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC------cccccccccchhhHhhcCce---------eeeccCCC
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi------~~~~~~~~LS~g~kqr~~ia---------li~DEpts 196 (399)
+....+....+--. .....+.+.++.+++ .++++...||+||+||+.++ +++|||||
T Consensus 66 ~~~~~~~~~tv~~~--------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 66 QDPQLFPGLTVREN--------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp SSHCHHTTSBHHHH--------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccc--------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 43222222221111 233456777777765 34445599999999999998 99999996
No 403
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.65 E-value=2.2e-16 Score=180.76 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=113.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEE-CCEeecccCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
+++|++.+ |+++||+|+||||||||+++|+|...| .+|.|.+ +|.++.-++..- .+..++++
T Consensus 403 ~isl~i~~--Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~i~~g~~i~~~~~~~----lr~~Ig~V 465 (1466)
T PTZ00265 403 DLNFTLTE--GKTYAFVGESGCGKSTILKLIERLYDP-----------TEGDIIINDSHNLKDINLKW----WRSKIGVV 465 (1466)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHHHhccC-----------CCCeEEEeCCcchhhCCHHH----HHHhccEe
Confidence 67777777 789999999999999999999999765 8999999 467765444322 23446666
Q ss_pred hhhccccCC--hhhhHHHHhcC-----------------------------------------------------CcHHH
Q 015822 131 RQVIAVSKS--SDIVLMVLDAS-----------------------------------------------------KSEGH 155 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~-----------------------------------------------------~~~~~ 155 (399)
.|....+.. .+.+.+..... .....
T Consensus 466 ~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 545 (1466)
T PTZ00265 466 SQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIK 545 (1466)
T ss_pred cccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCC
Confidence 666544432 22332211000 00011
Q ss_pred HHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHHHHHhh--
Q 015822 156 RQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK-- 211 (399)
Q Consensus 156 ~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~ll~~l~-- 211 (399)
.+.+.+.++.+++ .+......|||||+||++|| |++||||++||......+.+.+.
T Consensus 546 ~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~ 625 (1466)
T PTZ00265 546 DSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625 (1466)
T ss_pred HHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 2345566666654 13456789999999999999 99999999999986555544443
Q ss_pred -h--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEec
Q 015822 212 -I--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 247 (399)
Q Consensus 212 -~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK 247 (399)
. ..|+|+++|++..... ...|+|++.
T Consensus 626 ~~~~g~TvIiIsHrls~i~~----------aD~Iivl~~ 654 (1466)
T PTZ00265 626 KGNENRITIIIAHRLSTIRY----------ANTIFVLSN 654 (1466)
T ss_pred hhcCCCEEEEEeCCHHHHHh----------CCEEEEEeC
Confidence 2 3599999999865432 355677765
No 404
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=4e-16 Score=140.38 Aligned_cols=171 Identities=18% Similarity=0.170 Sum_probs=114.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++++++.. +.+|.|+|-||||||||+|+|+|...+ ++|.|.++|.++.-+.+.- ...-..+++
T Consensus 24 ~~sL~I~~--g~FvtViGsNGAGKSTlln~iaG~l~~-----------t~G~I~Idg~dVtk~~~~~----RA~~larVf 86 (263)
T COG1101 24 GLSLEIAE--GDFVTVIGSNGAGKSTLLNAIAGDLKP-----------TSGQILIDGVDVTKKSVAK----RANLLARVF 86 (263)
T ss_pred cCceeecC--CceEEEEcCCCccHHHHHHHhhCcccc-----------CCceEEECceecccCCHHH----HhhHHHHHh
Confidence 67888888 679999999999999999999998765 9999999999987654321 111233445
Q ss_pred hhcc--ccCCh---hhh-HHHHhcC----Cc---HHHHHHHHHHHHHcCC----cccccccccchhhHhhcCce------
Q 015822 132 QVIA--VSKSS---DIV-LMVLDAS----KS---EGHRQILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS------ 188 (399)
Q Consensus 132 q~~~--~~~~~---d~i-l~v~d~~----~~---~~~~~~i~~~L~~~gi----~~~~~~~~LS~g~kqr~~ia------ 188 (399)
|... .+... +++ +.-..+. .. ....+...+.|..+++ +++.+...|||||+|-+.+.
T Consensus 87 Qdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~ 166 (263)
T COG1101 87 QDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHP 166 (263)
T ss_pred cchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCC
Confidence 5432 12221 222 2222211 11 1223345566777655 78889999999999998776
Q ss_pred ---eeeccCCCCCCHHHHHHHHHHhh----hC-CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 189 ---FNSTLPLTHVDEKLCYQILHEYK----IH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 189 ---li~DEpts~LD~~~v~~ll~~l~----~~-~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
+++||-|++||+.....+++.-. .. -+.++|||++... ..|-..++++.-.
T Consensus 167 pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~A---------l~yG~RlImLh~G 225 (263)
T COG1101 167 PKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA---------LDYGNRLIMLHSG 225 (263)
T ss_pred CcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHH---------HhhCCeEEEEeCC
Confidence 89999999999986655555432 22 3899999986432 1244556666543
No 405
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.64 E-value=3.1e-17 Score=154.85 Aligned_cols=193 Identities=23% Similarity=0.216 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEE-
Q 015822 28 GQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY- 106 (399)
Q Consensus 28 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~- 106 (399)
+.++.+.++++++++...+++ .+..+..-. ....|++||++|||||||+|+||+......+.-|.|+||+.-...+
T Consensus 147 rllr~kea~lrKeL~~vrrkr-~~r~gr~~~--s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp 223 (410)
T KOG0410|consen 147 RLLRIKEAQLRKELQRVRRKR-QRRVGREGE--SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP 223 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhccccC--CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC
Confidence 456677777777766554443 111111112 2459999999999999999999977666678899999999877666
Q ss_pred CCEeecccCccccccccccCccc-chhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhc
Q 015822 107 NDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTG 185 (399)
Q Consensus 107 ~g~~i~~iD~~Gl~~~~~~~~~~-~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~ 185 (399)
.|..+.+.||.|++...+.+.-- +...+..+..+|++++|+|.+.|....++
T Consensus 224 sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~--------------------------- 276 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQR--------------------------- 276 (410)
T ss_pred CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHH---------------------------
Confidence 57788899999998765433221 22345567789999999999988654332
Q ss_pred CceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHcCCCE
Q 015822 186 GISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNS 265 (399)
Q Consensus 186 ~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~~~~~ 265 (399)
+.+...|++++.... .....++-|-||+|.....--. +....
T Consensus 277 ---------------e~Vl~vL~~igv~~~--------------------pkl~~mieVdnkiD~e~~~~e~---E~n~~ 318 (410)
T KOG0410|consen 277 ---------------ETVLHVLNQIGVPSE--------------------PKLQNMIEVDNKIDYEEDEVEE---EKNLD 318 (410)
T ss_pred ---------------HHHHHHHHhcCCCcH--------------------HHHhHHHhhccccccccccCcc---ccCCc
Confidence 233334444332110 0012456789999975322100 11237
Q ss_pred EEecchhccchHHHHHHHHHHhC
Q 015822 266 VVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 266 i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
+++||.+|.|+++++.++...+.
T Consensus 319 v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 319 VGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccccCccHHHHHHHHHHHhh
Confidence 99999999999999999877654
No 406
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.64 E-value=6.1e-16 Score=178.03 Aligned_cols=169 Identities=20% Similarity=0.129 Sum_probs=120.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |++|||||++|||||||+++|+|... .+|.|.++|.++.-++...+ +..+++.+
T Consensus 1237 ~is~~I~~--GekvaIvGrSGsGKSTLl~lL~rl~~------------~~G~I~IdG~di~~i~~~~l----R~~is~Ip 1298 (1490)
T TIGR01271 1237 DLSFSVEG--GQRVGLLGRTGSGKSTLLSALLRLLS------------TEGEIQIDGVSWNSVTLQTW----RKAFGVIP 1298 (1490)
T ss_pred ccEEEEcC--CCEEEEECCCCCCHHHHHHHHhhhcC------------CCcEEEECCEEcccCCHHHH----HhceEEEe
Confidence 67788887 78999999999999999999999852 57999999999876654333 34567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccc-----------cccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNK-----------RPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~-----------~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+-..+ |.... ...+.+.+.|+.+++ .+.+ .-..||+||+||+++| |
T Consensus 1299 Qdp~LF~G-TIR~NL-dp~~~-~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1299 QKVFIFSG-TFRKNL-DPYEQ-WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred CCCccCcc-CHHHHh-CcccC-CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 87766654 222222 32221 123456777777765 2222 2247999999999999 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||.++-..+.+.+. ...|+|+|+|.+.... ..+.|+|+.+.-+.
T Consensus 1376 lLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~----------~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL----------ECQQFLVIEGSSVK 1430 (1490)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------hCCEEEEEECCEEE
Confidence 9999999999986555555554 3459999999975433 24677888776443
No 407
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=4e-16 Score=159.21 Aligned_cols=154 Identities=26% Similarity=0.268 Sum_probs=109.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCcccccccccc-CcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~-~~~~~~q~~~~~~~~d 141 (399)
+|+|+|.||||||||+|.|+|... .++++|++|++...+.+.++|..+.++||||+...... ...+..+....+..+|
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad 82 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEAD 82 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCC
Confidence 799999999999999999999874 68999999999999999999999999999998641110 0001123334567788
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|+.......+. .+..+++.
T Consensus 83 ~il~vvd~~~~~~~~~~-------------------------------------------~~~~~l~~------------ 107 (435)
T PRK00093 83 VILFVVDGRAGLTPADE-------------------------------------------EIAKILRK------------ 107 (435)
T ss_pred EEEEEEECCCCCCHHHH-------------------------------------------HHHHHHHH------------
Confidence 88888887653221110 01111111
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCCh-hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
..+|+++|+||+|.... .....+.. ..+++++||.++.|+++|.+.+.+.+
T Consensus 108 ---------------~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 108 ---------------SNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred ---------------cCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 13699999999997642 22333332 23589999999999999999887733
No 408
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=8.2e-16 Score=167.55 Aligned_cols=177 Identities=16% Similarity=0.145 Sum_probs=130.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
|+++++.. |..+|||||+||||||.+..|-..+ ||..|.+.++|.++.-+++.-++ ..++.+.
T Consensus 1008 ~l~l~i~~--GqTvALVG~SGsGKSTvI~LLeRfY-----------dp~~G~V~IDg~dik~lnl~~LR----~~i~lVs 1070 (1228)
T KOG0055|consen 1008 NLSLSIRA--GQTVALVGPSGSGKSTVISLLERFY-----------DPDAGKVKIDGVDIKDLNLKWLR----KQIGLVS 1070 (1228)
T ss_pred CCcEEecC--CCEEEEECCCCCCHHHHHHHHHHhc-----------CCCCCeEEECCcccccCCHHHHH----Hhcceec
Confidence 77777777 7899999999999999999999987 45999999999999988876554 4567777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|.+.++.. .++|.+- ... -..+.+.+.++..++ .+..+-.+||||||||++||
T Consensus 1071 QEP~LF~~TIrENI~YG---~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPk 1146 (1228)
T KOG0055|consen 1071 QEPVLFNGTIRENIAYG---SEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPK 1146 (1228)
T ss_pred cCchhhcccHHHHHhcc---CCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCC
Confidence 77665544 4555444 211 123344444444332 34555679999999999999
Q ss_pred -eeeccCCCCCCHH---HHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH
Q 015822 189 -FNSTLPLTHVDEK---LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (399)
Q Consensus 189 -li~DEpts~LD~~---~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l 259 (399)
|++||.||+||.+ .|.+.|+......|-|+|.|.++.-. ..++|+|+.+.-.+....-+.|
T Consensus 1147 ILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq----------naD~I~Vi~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1147 ILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ----------NADVIAVLKNGKVVEQGTHDEL 1211 (1228)
T ss_pred eeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh----------cCCEEEEEECCEEEecccHHHH
Confidence 9999999999987 56677777667778999999988655 3578888887655544333333
No 409
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.63 E-value=8.3e-16 Score=165.61 Aligned_cols=156 Identities=24% Similarity=0.298 Sum_probs=108.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCccccccccccCcc--cch--hhccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--RGR--QVIAV 136 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~--~~~--q~~~~ 136 (399)
..+|+|+|.||||||||+|+|++... .++++||||+++....+.++|.++.++||||+.+......+ +.. .....
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 35899999999999999999999874 58999999999999999999999999999998653322111 000 11234
Q ss_pred cCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcE
Q 015822 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (399)
Q Consensus 137 ~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~ 216 (399)
++.+|++++|+|++........ .++.
T Consensus 530 i~~advvilViDat~~~s~~~~----------------------------------------------~i~~-------- 555 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDL----------------------------------------------KVMS-------- 555 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHH----------------------------------------------HHHH--------
Confidence 5778888888887654221110 0000
Q ss_pred EEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHH----HH------cCCCEEEecchhccchHHHHHHHHHH
Q 015822 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK----LA------RQPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 217 v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~----l~------~~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
.+. ...+|+++|+||+|+......+. +. .+.+++++||++|.|+++|++.+.+.
T Consensus 556 --------------~~~--~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~ 619 (712)
T PRK09518 556 --------------MAV--DAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEA 619 (712)
T ss_pred --------------HHH--HcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 000 11379999999999975432211 11 12357899999999999988777554
Q ss_pred h
Q 015822 287 M 287 (399)
Q Consensus 287 l 287 (399)
+
T Consensus 620 ~ 620 (712)
T PRK09518 620 L 620 (712)
T ss_pred H
Confidence 4
No 410
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.63 E-value=1.5e-15 Score=173.67 Aligned_cols=160 Identities=11% Similarity=0.040 Sum_probs=107.0
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.++++.+.+ |+.++|+||||||||||||+|+|....- ..|.+|.|.++|.++.-.. ...+..+++.
T Consensus 78 ~~vs~~i~~--Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-------~~~~~G~I~~~G~~~~~~~-----~~~r~~i~yv 143 (1394)
T TIGR00956 78 KPMDGLIKP--GELTVVLGRPGSGCSTLLKTIASNTDGF-------HIGVEGVITYDGITPEEIK-----KHYRGDVVYN 143 (1394)
T ss_pred eCCEEEEEC--CEEEEEECCCCCCHHHHHHHHhCCCCCC-------CCCceeEEEECCEehHHHH-----hhcCceeEEe
Confidence 378888888 7899999999999999999999985210 1237899999998764221 1112235566
Q ss_pred hhhccccCCh---hhhHHHHhcC---------CcHHHHHH-HHHHHHHcCC--cccc-----cccccchhhHhhcCce--
Q 015822 131 RQVIAVSKSS---DIVLMVLDAS---------KSEGHRQI-LTKELEAVGL--RLNK-----RPPQIYFKKKKTGGIS-- 188 (399)
Q Consensus 131 ~q~~~~~~~~---d~il~v~d~~---------~~~~~~~~-i~~~L~~~gi--~~~~-----~~~~LS~g~kqr~~ia-- 188 (399)
.|....+... +.+.+..... ...+..+. ++..|+.+|+ ..++ .+..||||||||+.||
T Consensus 144 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~a 223 (1394)
T TIGR00956 144 AETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEA 223 (1394)
T ss_pred ccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHH
Confidence 6654344432 3333322211 11111223 3557888988 3333 4568999999999998
Q ss_pred -------eeeccCCCCCCHHHHHHHH---HHhhh--CCcEEEEcCCCC
Q 015822 189 -------FNSTLPLTHVDEKLCYQIL---HEYKI--HNAEVLFREDAT 224 (399)
Q Consensus 189 -------li~DEpts~LD~~~v~~ll---~~l~~--~~~~v~vthd~~ 224 (399)
+++||||++||......++ +.+.. ..++++++|+..
T Consensus 224 L~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~ 271 (1394)
T TIGR00956 224 SLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCS 271 (1394)
T ss_pred HHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Confidence 9999999999998555544 44442 348999999964
No 411
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.63 E-value=1.6e-15 Score=132.62 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=62.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC---CCCccccceeeeeceEEEEC-CEeecccCccccccccccCcccchhhccccCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHS---EAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~---~vs~~p~TT~~~~~G~i~~~-g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.|+|+|++|||||||+|+|+|... +....+++|+++....+.+. +..+.++||||.... .......+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~-------~~~~~~~~~~ 74 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF-------IKNMLAGAGG 74 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH-------HHHHHhhhhc
Confidence 689999999999999999998642 12235789999988888887 889999999996421 1122334567
Q ss_pred hhhhHHHHhcCC
Q 015822 140 SDIVLMVLDASK 151 (399)
Q Consensus 140 ~d~il~v~d~~~ 151 (399)
+|++++|+|+..
T Consensus 75 ad~ii~V~d~~~ 86 (164)
T cd04171 75 IDLVLLVVAADE 86 (164)
T ss_pred CCEEEEEEECCC
Confidence 999999988764
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=9.2e-16 Score=150.02 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=100.8
Q ss_pred cceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchh
Q 015822 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (399)
Q Consensus 53 ~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q 132 (399)
++|-|.- +.+||||||||+||||||..|+|... |+.|.+.-+-. ..+|+..|
T Consensus 606 ldFGiDm--dSRiaIVGPNGVGKSTlLkLL~Gkl~-----------P~~GE~RKnhr---------------L~iG~FdQ 657 (807)
T KOG0066|consen 606 LDFGIDM--DSRIAIVGPNGVGKSTLLKLLIGKLD-----------PNDGELRKNHR---------------LRIGWFDQ 657 (807)
T ss_pred ccccccc--cceeEEECCCCccHHHHHHHHhcCCC-----------CCcchhhccce---------------eeeechhh
Confidence 3344444 45999999999999999999999864 48887764321 12233333
Q ss_pred hcc-ccCC-hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcc---cccccccchhhHhhcCce---------eeeccCCCCC
Q 015822 133 VIA-VSKS-SDIVLMVLDASKSEGHRQILTKELEAVGLRL---NKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (399)
Q Consensus 133 ~~~-~~~~-~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~---~~~~~~LS~g~kqr~~ia---------li~DEpts~L 198 (399)
... .+.. -....++...++- ..+..+..|..||+.. .-....|||||+.|++++ |++||||++|
T Consensus 658 h~~E~L~~Eetp~EyLqr~FNl--pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNL 735 (807)
T KOG0066|consen 658 HANEALNGEETPVEYLQRKFNL--PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNL 735 (807)
T ss_pred hhHHhhccccCHHHHHHHhcCC--ChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCc
Confidence 221 1111 1223334344332 2455778899999832 234689999999999987 9999999999
Q ss_pred CHHHHHHHHHHhh-hCCcEEEEcCCCCH
Q 015822 199 DEKLCYQILHEYK-IHNAEVLFREDATV 225 (399)
Q Consensus 199 D~~~v~~ll~~l~-~~~~~v~vthd~~~ 225 (399)
|.+.+..+-+.+. +.+++|+||||..+
T Consensus 736 DIESIDALaEAIney~GgVi~VsHDeRL 763 (807)
T KOG0066|consen 736 DIESIDALAEAINEYNGGVIMVSHDERL 763 (807)
T ss_pred chhhHHHHHHHHHhccCcEEEEecccce
Confidence 9999999999998 67899999999765
No 413
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=7.9e-16 Score=165.79 Aligned_cols=155 Identities=23% Similarity=0.239 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCc--ccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~--~~~~q~~~~~~~ 139 (399)
..|+|+|.||||||||||+|+|.. +.++++||+|++...+...++|..+.++||||+.... ... .+..+....++.
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV-EGIDSAIASQAQIAVSL 354 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC-ccHHHHHHHHHHHHHHh
Confidence 589999999999999999999986 4689999999999999999999999999999975321 111 122344445678
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|+.......+. .+...++
T Consensus 355 aD~iL~VvDa~~~~~~~d~-------------------------------------------~i~~~Lr----------- 380 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDE-------------------------------------------RIVRMLR----------- 380 (712)
T ss_pred CCEEEEEEECCCCCCHHHH-------------------------------------------HHHHHHH-----------
Confidence 9999999988643211110 0111111
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-hHHHHH--cCCCEEEecchhccchHHHHHHHHHHhC
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-~~~~l~--~~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
...+|+++|+||+|+.... ...... .....+++||++|.|+++|++.+.+.+.
T Consensus 381 ----------------~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 381 ----------------RAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred ----------------hcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcc
Confidence 1237999999999986432 222222 2345789999999999999999887664
No 414
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.62 E-value=1.9e-15 Score=131.87 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=106.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
..|..+.. |+++-+|||||||||||+..|+|..+ -+|.|.+.|.+++-..+..+... +
T Consensus 17 plS~qv~a--Ge~~HliGPNGaGKSTLLA~lAGm~~------------~sGsi~~~G~~l~~~~~~eLArh--------R 74 (248)
T COG4138 17 PLSGEVRA--GEILHLVGPNGAGKSTLLARMAGMTS------------GSGSIQFAGQPLEAWSATELARH--------R 74 (248)
T ss_pred cccccccc--ceEEEEECCCCccHHHHHHHHhCCCC------------CCceEEECCcchhHHhHhHHHHH--------H
Confidence 34445555 88999999999999999999999864 68999999999887665443221 1
Q ss_pred hhccccCChhhhHHHH---hcCCcHH-HHHHHHHHHHHcCC--cccccccccchhhHhhcCce----------------e
Q 015822 132 QVIAVSKSSDIVLMVL---DASKSEG-HRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----------------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~---d~~~~~~-~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia----------------l 189 (399)
..++.-+.+-..+.|. ..+.|.. ....+.+....+++ .+.+...+|||||-||+.+| +
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LL 154 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLL 154 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeE
Confidence 1111112222222221 2233322 23345555566677 77888999999999999888 8
Q ss_pred eeccCCCCCCHH---HHHHHHHHhhhCC-cEEEEcCCCCH
Q 015822 190 NSTLPLTHVDEK---LCYQILHEYKIHN-AEVLFREDATV 225 (399)
Q Consensus 190 i~DEpts~LD~~---~v~~ll~~l~~~~-~~v~vthd~~~ 225 (399)
++|||.++||.. .+..++..+...+ ++|+.+||++-
T Consensus 155 llDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh 194 (248)
T COG4138 155 LLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH 194 (248)
T ss_pred EecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh
Confidence 899999999987 4667778777555 99999999763
No 415
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.61 E-value=6e-16 Score=128.89 Aligned_cols=88 Identities=40% Similarity=0.596 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCc--ccchhhccccCCh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 140 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~--~~~~q~~~~~~~~ 140 (399)
+|+|+|++|||||||+|+|++.. ..++++|+||+.+..+.+.+++..+.++||||+........ ....+....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999974 57999999999999999999999999999999876432221 1223455555778
Q ss_pred hhhHHHHhcCC
Q 015822 141 DIVLMVLDASK 151 (399)
Q Consensus 141 d~il~v~d~~~ 151 (399)
|++++++++..
T Consensus 81 d~ii~vv~~~~ 91 (116)
T PF01926_consen 81 DLIIYVVDASN 91 (116)
T ss_dssp SEEEEEEETTS
T ss_pred CEEEEEEECCC
Confidence 88888888654
No 416
>PLN03140 ABC transporter G family member; Provisional
Probab=99.60 E-value=4.8e-15 Score=169.36 Aligned_cols=156 Identities=18% Similarity=0.118 Sum_probs=105.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++++.+.+ |+.++|+|||||||||||++|+|...+. ...+|.|.++|.++.-.+. +..+++..
T Consensus 183 ~vs~~i~~--Ge~~~llGpnGSGKSTLLk~LaG~l~~~--------~~~~G~I~~nG~~~~~~~~-------~~~i~yv~ 245 (1470)
T PLN03140 183 DASGIIKP--SRMTLLLGPPSSGKTTLLLALAGKLDPS--------LKVSGEITYNGYRLNEFVP-------RKTSAYIS 245 (1470)
T ss_pred CCeEEEeC--CeEEEEEcCCCCCHHHHHHHHhCCCCCC--------CcceeEEEECCEechhhcc-------cceeEEec
Confidence 78888888 7899999999999999999999987540 0138999999988743221 22345555
Q ss_pred hhccccCC---hhhhHHHHhcCC------------cHH---------H---------------HHHHHHHHHHcCCc---
Q 015822 132 QVIAVSKS---SDIVLMVLDASK------------SEG---------H---------------RQILTKELEAVGLR--- 169 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~------------~~~---------~---------------~~~i~~~L~~~gi~--- 169 (399)
|....+.. .+.+.+...... ..+ + ...+...|+.+|+.
T Consensus 246 Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~ 325 (1470)
T PLN03140 246 QNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICK 325 (1470)
T ss_pred ccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcccc
Confidence 54333333 233333221110 000 0 01245678888882
Q ss_pred ----ccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHHHHHhh---h--CCcEEEEcCCCC
Q 015822 170 ----LNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDAT 224 (399)
Q Consensus 170 ----~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~ll~~l~---~--~~~~v~vthd~~ 224 (399)
.+..+..||||||||+.|+ +++||||++||.....++++.++ . ..++++++|+..
T Consensus 326 ~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~ 398 (1470)
T PLN03140 326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPA 398 (1470)
T ss_pred CceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Confidence 2556789999999999998 99999999999986555555443 2 348999999864
No 417
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.60 E-value=1.9e-15 Score=131.54 Aligned_cols=154 Identities=33% Similarity=0.401 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCccccccccccCcc-cchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~-~~~q~~~~~~~~ 140 (399)
.+|+++|++|||||||+|.++|... .+++.+.||.....+.....+..+.++||||+......... ........+..+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDV 83 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhC
Confidence 3899999999999999999999874 56778889998888888777889999999997542211000 001111223445
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.++++++...+..+. + ..+++.
T Consensus 84 d~i~~v~d~~~~~~~~------------------------------------------~----~~~~~~----------- 106 (168)
T cd04163 84 DLVLFVVDASEPIGEG------------------------------------------D----EFILEL----------- 106 (168)
T ss_pred CEEEEEEECCCccCch------------------------------------------H----HHHHHH-----------
Confidence 5555555554331100 0 000110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCC-ChhhHH----HHHc---CCCEEEecchhccchHHHHHHHHHH
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVD----KLAR---QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~-~~~~~~----~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
+. ....|.++|+||+|+. ....+. .+.. ..+++++|+..+.|+++|.+.|.+.
T Consensus 107 -----------~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 107 -----------LK--KSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred -----------HH--HhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 00 0126999999999997 343322 2221 2468999999999999999888664
No 418
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=3.5e-15 Score=131.12 Aligned_cols=153 Identities=27% Similarity=0.337 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCccc----chhhcccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAVS 137 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~----~~q~~~~~ 137 (399)
.+|+|+|.+|+|||||+|+|++.. ...+++|+||++...+.+..+|.++.++||||+.......... ..+....+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~ 82 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI 82 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHH
Confidence 479999999999999999999987 4578899999999999999999999999999975432111110 01122234
Q ss_pred CChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEE
Q 015822 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (399)
Q Consensus 138 ~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v 217 (399)
..+|++++++|+..+..... ..++..
T Consensus 83 ~~~d~vi~v~d~~~~~~~~~----------------------------------------------~~~~~~-------- 108 (174)
T cd01895 83 ERADVVLLVIDATEGITEQD----------------------------------------------LRIAGL-------- 108 (174)
T ss_pred hhcCeEEEEEeCCCCcchhH----------------------------------------------HHHHHH--------
Confidence 56677777777654322110 001110
Q ss_pred EEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh--hhHH----HHHc------CCCEEEecchhccchHHHHHHHHH
Q 015822 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDVD----KLAR------QPNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 218 ~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~--~~~~----~l~~------~~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
+. ...+|.++|+||+|+... ...+ .+.+ ..+++++||+.+.|++++.+.+.+
T Consensus 109 --------------~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 109 --------------IL--EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred --------------HH--hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 00 013699999999998754 2222 2221 245899999999999999888765
No 419
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=6.2e-15 Score=147.08 Aligned_cols=145 Identities=19% Similarity=0.179 Sum_probs=102.9
Q ss_pred cceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchh
Q 015822 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (399)
Q Consensus 53 ~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q 132 (399)
.++++.. ..+++++|+||+||||+++.+.+...+ ..|.+.+.+. ..+++..|
T Consensus 383 ~~~d~e~--~sRi~~vg~ng~gkst~lKi~~~~l~~-----------~rgi~~~~~r---------------~ri~~f~Q 434 (582)
T KOG0062|consen 383 LGLDRES--DSRISRVGENGDGKSTLLKILKGDLTP-----------TRGIVGRHPR---------------LRIKYFAQ 434 (582)
T ss_pred cCCccch--hhhhheeccCchhHHHHHHHHhccCCc-----------ccceeeeccc---------------ceecchhH
Confidence 3444444 459999999999999999999997654 6676655321 11222233
Q ss_pred hccccCChhhhHHHHh---cCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 133 VIAVSKSSDIVLMVLD---ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 133 ~~~~~~~~d~il~v~d---~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
.- +...|.....+| .+.+....+.++..|..||+ ........|||||+.|+++| |++|||||+
T Consensus 435 hh--vd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNh 512 (582)
T KOG0062|consen 435 HH--VDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNH 512 (582)
T ss_pred hh--hhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcc
Confidence 21 112222222222 12222234568889999999 44555789999999999998 999999999
Q ss_pred CCHHHHHHHHHHhh-hCCcEEEEcCCCCHHH
Q 015822 198 VDEKLCYQILHEYK-IHNAEVLFREDATVDD 227 (399)
Q Consensus 198 LD~~~v~~ll~~l~-~~~~~v~vthd~~~~~ 227 (399)
||.+.+..+-+.++ +.+.||+||||....+
T Consensus 513 LD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 513 LDRDSLGALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEEECcHHHHh
Confidence 99999999999998 8889999999976533
No 420
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.59 E-value=4.2e-15 Score=147.17 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=117.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++||.+.+ |..||||||+|+||||+++.|.... |.++|.|.++|++|..+....+ +..+|.++
T Consensus 556 disF~v~p--GktvAlVG~SGaGKSTimRlLfRff-----------dv~sGsI~iDgqdIrnvt~~SL----Rs~IGVVP 618 (790)
T KOG0056|consen 556 DISFTVQP--GKTVALVGPSGAGKSTIMRLLFRFF-----------DVNSGSITIDGQDIRNVTQSSL----RSSIGVVP 618 (790)
T ss_pred cceEEecC--CcEEEEECCCCCchhHHHHHHHHHh-----------hccCceEEEcCchHHHHHHHHH----HHhcCccc
Confidence 78888888 7799999999999999999999875 4489999999999887654443 34567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.+ .|+.-+.-..+....+.+.+.....+| .+..+--+||||||||++|| +
T Consensus 619 QDtvLFNd--TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 619 QDTVLFND--TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred Ccceeecc--eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence 76544433 222211111111111112222222211 34555678999999999999 8
Q ss_pred eeccCCCCCCHH---HHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh
Q 015822 190 NSTLPLTHVDEK---LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (399)
Q Consensus 190 i~DEpts~LD~~---~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~ 253 (399)
++||.||+||.. .+...|..+....+-++|.|.++..- ..+.|+|+.+.-++..
T Consensus 697 lLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTiv----------nAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIV----------NADLILVISNGRIVER 753 (790)
T ss_pred EEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhee----------cccEEEEEeCCeEeec
Confidence 899999999965 56666666667778888889876422 3467778777665533
No 421
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.58 E-value=3.9e-15 Score=138.92 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=53.2
Q ss_pred HHHHHHcCC---cccccccccchhhHhhcCce-----------eeeccCCCCCCHHHHHHHHHHh---hh-CCcEEEEcC
Q 015822 160 TKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILHEY---KI-HNAEVLFRE 221 (399)
Q Consensus 160 ~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia-----------li~DEpts~LD~~~v~~ll~~l---~~-~~~~v~vth 221 (399)
.+.|+.+++ .+++++..||+||+||+.++ +++||||++||......+++.+ .. ..+++++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 567888888 36889999999999999876 8889999999998655554444 32 348999999
Q ss_pred CCCHH
Q 015822 222 DATVD 226 (399)
Q Consensus 222 d~~~~ 226 (399)
|....
T Consensus 198 ~~~~~ 202 (226)
T cd03270 198 DEDTI 202 (226)
T ss_pred CHHHH
Confidence 98543
No 422
>PRK04213 GTP-binding protein; Provisional
Probab=99.58 E-value=5.9e-15 Score=134.59 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=45.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCcccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI 119 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl 119 (399)
..+|+|+|++|||||||+|+|+|....++..|++|+++.. +.++ ++.++||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCcc
Confidence 3589999999999999999999988778889999998764 3333 6889999996
No 423
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.58 E-value=1.3e-15 Score=139.26 Aligned_cols=151 Identities=8% Similarity=-0.031 Sum_probs=92.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.++++++.+ | .++|+||||||||||+++|+|...+.... .-+.+..|.+.+.|..+... .....+++.
T Consensus 14 ~~~~l~~~~--g-~~~i~G~nGsGKStll~al~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~v 81 (197)
T cd03278 14 DKTTIPFPP--G-LTAIVGPNGSGKSNIIDAIRWVLGEQSAK--SLRGEKMSDVIFAGSETRKP-------ANFAEVTLT 81 (197)
T ss_pred CCeeeecCC--C-cEEEECCCCCCHHHHHHHHHHHhccccch--hhcccCHHHHhccCCCCCCC-------CceEEEEEE
Confidence 455666665 6 99999999999999999999875331000 00112234455555433110 011223444
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce-------------eeeccCCCC
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS-------------FNSTLPLTH 197 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia-------------li~DEpts~ 197 (399)
+|..... +.. . ..+.+.+.|+. .-..++++..||+||+||++++ +++||||++
T Consensus 82 fq~~~~~-------~~~---~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~ 147 (197)
T cd03278 82 FDNSDGR-------YSI---I---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA 147 (197)
T ss_pred EEcCCCc-------eeE---E---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence 4433222 000 0 12345555555 2246778899999999998654 778999999
Q ss_pred CCHHHHHHHHHHhh---hCCcEEEEcCCCCHHH
Q 015822 198 VDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (399)
Q Consensus 198 LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~ 227 (399)
||+.....++..+. ...++|++||+....+
T Consensus 148 LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 148 LDDANVERFARLLKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred CCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh
Confidence 99986666555554 3458999999976543
No 424
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.58 E-value=3.5e-15 Score=157.09 Aligned_cols=147 Identities=25% Similarity=0.337 Sum_probs=102.7
Q ss_pred cCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCc-ccchhhccccCChhhhHHHH
Q 015822 69 GFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSDIVLMVL 147 (399)
Q Consensus 69 G~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~-~~~~q~~~~~~~~d~il~v~ 147 (399)
|.||||||||+|+|+|....++++|+||++...|.+.++|.++.++||||......... ............+|++++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999999888999999999999999999999999999999764321100 00011111224678888888
Q ss_pred hcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHH
Q 015822 148 DASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDD 227 (399)
Q Consensus 148 d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~ 227 (399)
|++.......... ++.
T Consensus 81 Dat~ler~l~l~~--------------------------------------------ql~-------------------- 96 (591)
T TIGR00437 81 DASNLERNLYLTL--------------------------------------------QLL-------------------- 96 (591)
T ss_pred cCCcchhhHHHHH--------------------------------------------HHH--------------------
Confidence 8765322111000 000
Q ss_pred HHHHHhhccccccEEEEEecCCCCChh----hHHHHHcC--CCEEEecchhccchHHHHHHHHHHh
Q 015822 228 LIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 228 ~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~~--~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
...+|+++|+||+|+.... +.+.+.+. .+++++||+++.|++++.+.+.+..
T Consensus 97 --------~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 97 --------ELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred --------hcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 0136999999999986322 22333322 3589999999999999999987654
No 425
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.58 E-value=5.3e-15 Score=130.29 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC----CCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSE----AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~----vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.|+|+|++|||||||++.|++...+ ....+.+|+....+.+.+++..+.++||||..... ......+..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR-------SLWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHhCC
Confidence 3789999999999999999886432 12345778888888999999999999999964321 112234678
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|.+++++|...+.. ......++.. +++..
T Consensus 74 ~~~~v~vvd~~~~~~-~~~~~~~~~~----------------------------------------~~~~~--------- 103 (167)
T cd04160 74 CHAIIYVIDSTDRER-FEESKSALEK----------------------------------------VLRNE--------- 103 (167)
T ss_pred CCEEEEEEECchHHH-HHHHHHHHHH----------------------------------------HHhCh---------
Confidence 899999988765421 1111111111 10000
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChh---hHHHHHc---------CCCEEEecchhccchHHHHHHHHH
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR---------QPNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~---~~~~l~~---------~~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
.....|+++|+||+|+.... +.....+ ..+++++||++|.|++++.+.|.+
T Consensus 104 ---------------~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 104 ---------------ALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ---------------hhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 01236999999999986442 2222211 124899999999999999887753
No 426
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=1.6e-14 Score=152.68 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=109.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++..+++ |+..||+||+|||||||+|+|+|....= ....|.+.+||.+... +..+.-.+++.
T Consensus 48 ~vsg~~~~--Gel~AimG~SGsGKtTLL~~Lagr~~~~--------~~~~G~ilvNG~~~~~-------~~~~~~s~yV~ 110 (613)
T KOG0061|consen 48 GVSGTAKP--GELLAIMGPSGSGKTTLLNALAGRLNGG--------LKLSGEILLNGRPRDS-------RSFRKISGYVQ 110 (613)
T ss_pred CcEEEEec--CeEEEEECCCCCCHHHHHHHHhccccCC--------CcceEEEEECCccCch-------hhhhheeEEEc
Confidence 77777777 7899999999999999999999987530 1278999999954321 11122334555
Q ss_pred hhccccCChhhhHH---HHhcC-----CcHHHHHHHHHHHHHcCC--ccccccc-----ccchhhHhhcCce--------
Q 015822 132 QVIAVSKSSDIVLM---VLDAS-----KSEGHRQILTKELEAVGL--RLNKRPP-----QIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~~d~il~---v~d~~-----~~~~~~~~i~~~L~~~gi--~~~~~~~-----~LS~g~kqr~~ia-------- 188 (399)
|.-..+....+-.. ..... ...+..+++++.+..+|+ ..+...+ .+||||++|+.||
T Consensus 111 QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~ 190 (613)
T KOG0061|consen 111 QDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPS 190 (613)
T ss_pred ccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCC
Confidence 54444444333222 11111 234556789999999998 3455554 5999999999999
Q ss_pred -eeeccCCCCCCHHH---HHHHHHHhhhCC-cEEEEcCCCCH
Q 015822 189 -FNSTLPLTHVDEKL---CYQILHEYKIHN-AEVLFREDATV 225 (399)
Q Consensus 189 -li~DEpts~LD~~~---v~~ll~~l~~~~-~~v~vthd~~~ 225 (399)
+++||||+|||... +-++|+.+...+ ++++.-|.++-
T Consensus 191 iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss 232 (613)
T KOG0061|consen 191 ILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSS 232 (613)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcH
Confidence 89999999999874 556666666555 67777798764
No 427
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.56 E-value=1.4e-14 Score=124.40 Aligned_cols=58 Identities=33% Similarity=0.384 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGII 120 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~ 120 (399)
.+|+++|.+|||||||+|.|++...+.+.+|++|.+.....+.+++ ..+.++|+||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 3799999999999999999999987778889999999998899988 778899999943
No 428
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.56 E-value=2.6e-14 Score=124.93 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=104.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+|+|++|||||||++.+++.....+..|++|.+.....+.++|. .+.++|+||..... ......++.+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR-------SLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhccCC
Confidence 6899999999999999999998877788899999999999988874 57899999843211 11223457789
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|...+.. .+.+..++.. +..
T Consensus 75 ~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~~--------- 100 (161)
T cd01861 75 VAVVVYDITNRQS-FDNTDKWIDD--------------------------------------------VRD--------- 100 (161)
T ss_pred EEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HHH---------
Confidence 9888888765432 1222222211 100
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHH
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
......|+++|+||+|+... ++...+.+ ...++.+||.++.|++++.+.+.+.
T Consensus 101 ------------~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 101 ------------ERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ------------hCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 00013699999999999432 12222221 2347899999999999999988764
No 429
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.55 E-value=2.6e-14 Score=165.12 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=102.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|+||||||||+++|+|...+ ..|.+.++|. + ++..
T Consensus 656 ~isl~i~~--G~~v~IvG~~GsGKSTLl~~l~g~~~~-----------~~G~i~~~g~-i----------------~yv~ 705 (1522)
T TIGR00957 656 GITFSIPE--GALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVHMKGS-V----------------AYVP 705 (1522)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCcc-----------CCcEEEECCE-E----------------EEEc
Confidence 66777777 789999999999999999999999765 8899998762 2 2223
Q ss_pred hhccccCChhhhHHHHhcCC-cHHHHHHHH------HHHHHc--CC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKSSDIVLMVLDASK-SEGHRQILT------KELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~-~~~~~~~i~------~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+ +..+.-.+.-+.. ..+..+.+. +.++.+ |. .+..+...|||||+||+++| +++
T Consensus 706 Q~~~l~-~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illL 784 (1522)
T TIGR00957 706 QQAWIQ-NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLF 784 (1522)
T ss_pred CCcccc-CCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 332221 2112111111111 111111111 112222 22 35567789999999999999 999
Q ss_pred ccCCCCCCHHHHHHHHHHhh------hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 192 TLPLTHVDEKLCYQILHEYK------IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l~------~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||||++||......+++.+. ...+++++||+...... ...++++++.-+
T Consensus 785 DEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~----------~D~ii~l~~G~i 839 (1522)
T TIGR00957 785 DDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ----------VDVIIVMSGGKI 839 (1522)
T ss_pred cCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh----------CCEEEEecCCeE
Confidence 99999999987777766552 23489999999865432 355677765433
No 430
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.55 E-value=1.7e-14 Score=158.65 Aligned_cols=166 Identities=19% Similarity=0.191 Sum_probs=122.2
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.++++.|.+ |+..|+.|+|||||||+||+|+|...+ +.|.+.++|..+..- +. .......+|+-
T Consensus 582 ~~ls~~V~~--gecfgLLG~NGAGKtT~f~mltG~~~~-----------t~G~a~i~g~~i~~~-~~--~~~~~~~iGyC 645 (885)
T KOG0059|consen 582 RGLSFAVPP--GECFGLLGVNGAGKTTTFKMLTGETKP-----------TSGEALIKGHDITVS-TD--FQQVRKQLGYC 645 (885)
T ss_pred cceEEEecC--CceEEEecCCCCCchhhHHHHhCCccC-----------CcceEEEecCccccc-cc--hhhhhhhcccC
Confidence 377888888 779999999999999999999999877 899999988776431 00 01134556777
Q ss_pred hhhccccCC---hhhhHHHH--hcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~---~d~il~v~--d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|.-...+. -+.+.+.. .+.......+.++..|+.+++ ..+++.+.+|||+|+|+.+| +++|||
T Consensus 646 PQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEP 725 (885)
T KOG0059|consen 646 PQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEP 725 (885)
T ss_pred CchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCC
Confidence 776433333 23333322 222333344568899999999 78899999999999999877 899999
Q ss_pred CCCCCHH---HHHHHHHHhhhCC-cEEEEcCCCCHHH-HHHHH
Q 015822 195 LTHVDEK---LCYQILHEYKIHN-AEVLFREDATVDD-LIDVI 232 (399)
Q Consensus 195 ts~LD~~---~v~~ll~~l~~~~-~~v~vthd~~~~~-~~~~i 232 (399)
|+|+|+. .+..++..+...+ ++++.||.++..+ +|+.+
T Consensus 726 stGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 726 STGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRT 768 (885)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhh
Confidence 9999997 4666666666655 9999999988755 45543
No 431
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.55 E-value=1.2e-14 Score=167.34 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=96.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+.++|+|||||||||||++|+|...+ ..|.+.++|. + ++..
T Consensus 444 ~i~l~i~~--G~~~~I~G~~GsGKSTLl~~l~G~~~~-----------~~G~i~~~g~-i----------------ayv~ 493 (1490)
T TIGR01271 444 NISFKLEK--GQLLAVAGSTGSGKSSLLMMIMGELEP-----------SEGKIKHSGR-I----------------SFSP 493 (1490)
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCE-E----------------EEEe
Confidence 67788887 789999999999999999999999765 8899998872 2 2222
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHH-----HHHHHHHHcCC----cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQ-----ILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~-----~i~~~L~~~gi----~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .|.|.+... .......+ .+.+.++.+.. .+..+...||||||||+++| +++
T Consensus 494 Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illL 572 (1490)
T TIGR01271 494 QTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLL 572 (1490)
T ss_pred CCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 32222221 223322111 11100001 12223333321 34566789999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHH----hhhCCcEEEEcCCCCHHH
Q 015822 192 TLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDD 227 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~----l~~~~~~v~vthd~~~~~ 227 (399)
||||++||......+++. +....|+|++||+.....
T Consensus 573 Dep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~ 612 (1490)
T TIGR01271 573 DSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLK 612 (1490)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHH
Confidence 999999999976666653 223459999999986543
No 432
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.54 E-value=1.7e-14 Score=130.61 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=45.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC--CCCCccccceeeeeceEEEECCEeecccCccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~ 120 (399)
..|+|+|.+|||||||+|+|++.. ..+++.+++|+++....+ +.++.++||||+.
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~ 81 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYG 81 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCC
Confidence 589999999999999999999964 567888999988765433 4678999999964
No 433
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=130.23 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=46.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC--CCCCccccceeeeeceEEEECCEeecccCcccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI 119 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl 119 (399)
..-||++|++|||||||+|+|+|.. +.+|..||.|+.++-=.+ ++ .+.++|.||+
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGY 80 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGY 80 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCc
Confidence 5689999999999999999999977 679999999999885333 33 2778999986
No 434
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.54 E-value=3e-14 Score=128.53 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+|+|++|||||||++.+++.... ...+|+.+..+.+.+++.++.++|+||..... ......++.+|.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~ 89 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIKFKTFDLGGHEQAR-------RLWKDYFPEVDG 89 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhccCCE
Confidence 37899999999999999999986532 23457788889999999999999999853211 111234577888
Q ss_pred hHHHHhcCCc
Q 015822 143 VLMVLDASKS 152 (399)
Q Consensus 143 il~v~d~~~~ 152 (399)
+++++|.++.
T Consensus 90 iilV~D~~~~ 99 (190)
T cd00879 90 IVFLVDAADP 99 (190)
T ss_pred EEEEEECCcH
Confidence 8888887654
No 435
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.53 E-value=2.2e-14 Score=123.16 Aligned_cols=150 Identities=24% Similarity=0.307 Sum_probs=102.7
Q ss_pred EEcCCCCcHHHHHHHHhCCCCC-CCccccceeeeeceEEEEC-CEeecccCccccccccccCcccchhhccccCChhhhH
Q 015822 67 LIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVL 144 (399)
Q Consensus 67 lvG~~gaGKSTLln~L~g~~~~-vs~~p~TT~~~~~G~i~~~-g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il 144 (399)
|+|++|||||||+|.|++.... +++++++|.++....+.+. +..+.++|+||+.................++.+|.++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999998754 7889999999998888776 6789999999986543322211122233456677777
Q ss_pred HHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCC
Q 015822 145 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 224 (399)
Q Consensus 145 ~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~ 224 (399)
+++++.......... +...
T Consensus 81 ~v~~~~~~~~~~~~~----------------------------------------------~~~~--------------- 99 (163)
T cd00880 81 FVVDADLRADEEEEK----------------------------------------------LLEL--------------- 99 (163)
T ss_pred EEEeCCCCCCHHHHH----------------------------------------------HHHH---------------
Confidence 777765542221110 0000
Q ss_pred HHHHHHHHhhccccccEEEEEecCCCCChhhHHHH-------H---cCCCEEEecchhccchHHHHHHHHHH
Q 015822 225 VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL-------A---RQPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 225 ~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l-------~---~~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
. .....|.++|+||+|+......... . ...+++++||.++.|++++.+.+.+.
T Consensus 100 -------~--~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 100 -------L--RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred -------H--HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 0 0123699999999999865443221 1 12458999999999999999888653
No 436
>PTZ00243 ABC transporter; Provisional
Probab=99.53 E-value=5e-14 Score=162.63 Aligned_cols=157 Identities=16% Similarity=0.157 Sum_probs=102.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+.++|+|+|||||||||++|+|...+ ..|.+.+.+ . +++..
T Consensus 678 ~isl~i~~--G~~~~IiG~nGsGKSTLL~~i~G~~~~-----------~~G~i~~~~-~----------------i~yv~ 727 (1560)
T PTZ00243 678 DVSVSVPR--GKLTVVLGATGSGKSTLLQSLLSQFEI-----------SEGRVWAER-S----------------IAYVP 727 (1560)
T ss_pred eeEEEECC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECC-e----------------EEEEe
Confidence 66788877 789999999999999999999998765 788887632 1 22333
Q ss_pred hhccccCChhhhHHHHhcCC-cHHHH------HHHHHHHHHc--CC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKSSDIVLMVLDASK-SEGHR------QILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~-~~~~~------~~i~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+ +..+...+.-... ..... ..+.+.++.+ |+ .+..+...|||||+||+++| +++
T Consensus 728 Q~~~l~-~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illL 806 (1560)
T PTZ00243 728 QQAWIM-NATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLL 806 (1560)
T ss_pred CCCccC-CCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 332222 1122111111110 00000 1123344444 44 56778899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHHh---hh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 192 TLPLTHVDEKLCYQILHEY---KI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l---~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
||||++||......+++.+ .. ..++|++||+...... ...++++++.-
T Consensus 807 DEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~----------ad~ii~l~~G~ 858 (1560)
T PTZ00243 807 DDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPR----------ADYVVALGDGR 858 (1560)
T ss_pred cCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh----------CCEEEEEECCE
Confidence 9999999998666665533 12 3489999999765432 35566776543
No 437
>PLN03130 ABC transporter C family member; Provisional
Probab=99.52 E-value=3.8e-14 Score=163.92 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=103.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeec-eEEEECCEeecccCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP-GIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~-G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
+++|++.+ |+.++|+|++|||||||+++|+|...+ .. |.+.+.+ .+++.
T Consensus 635 ~inl~i~~--Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----------~~GG~I~l~~-----------------~Iayv 684 (1622)
T PLN03130 635 NINLDVPV--GSLVAIVGSTGEGKTSLISAMLGELPP-----------RSDASVVIRG-----------------TVAYV 684 (1622)
T ss_pred ceeEEecC--CCEEEEECCCCCCHHHHHHHHHHhhcc-----------CCCceEEEcC-----------------eEEEE
Confidence 67788888 779999999999999999999999765 77 7877543 12334
Q ss_pred hhhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce-------
Q 015822 131 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 188 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia------- 188 (399)
.|....+.. .|+|.+.-. .+.++..+.++..++ .+...-..||||||||+++|
T Consensus 685 ~Q~p~LfngTIreNI~fg~~-----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~ 759 (1622)
T PLN03130 685 PQVSWIFNATVRDNILFGSP-----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1622)
T ss_pred cCccccCCCCHHHHHhCCCc-----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 454433332 334433211 122334444444433 23344568999999999999
Q ss_pred --eeeccCCCCCCHHHHHHHHHHh----hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 189 --FNSTLPLTHVDEKLCYQILHEY----KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~ll~~l----~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+++|||||+||...-..+++.+ ....|+|++||+...... ...|+++.+.-+
T Consensus 760 ~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~----------aD~Ii~L~~G~i 817 (1622)
T PLN03130 760 DVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQ----------VDRIILVHEGMI 817 (1622)
T ss_pred CEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHh----------CCEEEEEeCCEE
Confidence 9999999999998665554432 234599999999855332 356777765443
No 438
>PLN03232 ABC transporter C family member; Provisional
Probab=99.52 E-value=3.9e-14 Score=163.37 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=101.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEE-ECCEeecccCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-YNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~-~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
+++|++.+ |+.++|+|++|||||||+++|+|...+ ..|.+. +. ..+++.
T Consensus 635 ~inl~i~~--Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----------~~G~i~~~~-----------------~~Iayv 684 (1495)
T PLN03232 635 DINLEIPV--GSLVAIVGGTGEGKTSLISAMLGELSH-----------AETSSVVIR-----------------GSVAYV 684 (1495)
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCcc-----------cCCCEEEec-----------------CcEEEE
Confidence 67788877 779999999999999999999999765 555332 11 123444
Q ss_pred hhhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce-------
Q 015822 131 RQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS------- 188 (399)
Q Consensus 131 ~q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia------- 188 (399)
.|....+.. .|+|.+--+ .+.++..+.++..++ .+...-..||||||||+++|
T Consensus 685 ~Q~p~Lf~gTIreNI~fg~~-----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 759 (1495)
T PLN03232 685 PQVSWIFNATVRENILFGSD-----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1495)
T ss_pred cCccccccccHHHHhhcCCc-----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCC
Confidence 555444433 344433211 122334444444433 23334468999999999999
Q ss_pred --eeeccCCCCCCHHHHHHHHHHh-h---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 189 --FNSTLPLTHVDEKLCYQILHEY-K---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~ll~~l-~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+++||||++||...-..+++.+ . ...|+|++||+...... ...|++++..-+
T Consensus 760 ~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~----------aD~Ii~L~~G~i 817 (1495)
T PLN03232 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPL----------MDRIILVSEGMI 817 (1495)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHh----------CCEEEEEeCCEE
Confidence 9999999999988666555442 2 34599999999765332 356777765433
No 439
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.51 E-value=3.3e-14 Score=128.98 Aligned_cols=147 Identities=22% Similarity=0.256 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC-------CCCCCccccceeeeeceEEEEC--------------CEeecccCccccccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT-------HSEAASYEFTTLTCIPGIIHYN--------------DTKIQLLDLPGIIEG 122 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~-------~~~vs~~p~TT~~~~~G~i~~~--------------g~~i~~iD~~Gl~~~ 122 (399)
.|+|+|.+|+|||||+++|++. ..+.+..+++|+++....+.+. +..+.++||||...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 6899999999999999999973 1234556789999988777776 67889999999632
Q ss_pred cccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHH
Q 015822 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (399)
Q Consensus 123 ~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~ 202 (399)
+..+.......+|.+++|+|+......... +.+
T Consensus 81 ------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~--~~~--------------------------------------- 113 (192)
T cd01889 81 ------LIRTIIGGAQIIDLMLLVVDATKGIQTQTA--ECL--------------------------------------- 113 (192)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCccHHHH--HHH---------------------------------------
Confidence 123333344567888888887643211100 000
Q ss_pred HHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh----HHHHH------------cCCCEE
Q 015822 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD----VDKLA------------RQPNSV 266 (399)
Q Consensus 203 v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~----~~~l~------------~~~~~i 266 (399)
.+ . .....|.++|+||+|+....+ .+.+. ...+++
T Consensus 114 --~~----------------------~-----~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 164 (192)
T cd01889 114 --VI----------------------G-----EILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPII 164 (192)
T ss_pred --HH----------------------H-----HHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 00 0 001359999999999874332 11111 113589
Q ss_pred EecchhccchHHHHHHHHHHh
Q 015822 267 VISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 267 ~vSa~~~~gl~~L~~~i~~~l 287 (399)
++||+++.|+++|++.+.+.+
T Consensus 165 ~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 165 PVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred EEeccCCCCHHHHHHHHHhcc
Confidence 999999999999999987754
No 440
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.51 E-value=6.2e-14 Score=123.32 Aligned_cols=81 Identities=22% Similarity=0.182 Sum_probs=60.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC---CEeecccCccccccccccCcccchhhccccCCh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~---g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.|+|+|++|||||||+|+|++........+++|.+.....+... +..+.++||||..... ......+..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~~~~~~~~~ 74 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT-------NMRARGASLT 74 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH-------HHHHHHHhhc
Confidence 68999999999999999999877555566788888877777764 7789999999963211 0111234668
Q ss_pred hhhHHHHhcCC
Q 015822 141 DIVLMVLDASK 151 (399)
Q Consensus 141 d~il~v~d~~~ 151 (399)
|++++++|++.
T Consensus 75 d~il~v~d~~~ 85 (168)
T cd01887 75 DIAILVVAADD 85 (168)
T ss_pred CEEEEEEECCC
Confidence 88888888765
No 441
>PRK09866 hypothetical protein; Provisional
Probab=99.51 E-value=6.2e-14 Score=144.47 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeee
Q 015822 28 GQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCI 100 (399)
Q Consensus 28 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~ 100 (399)
+.++++|+.|++++.+..+.+ ..++|+|++|+|||||+|+|+|... +.++.|+||+ |+
T Consensus 49 R~i~~ri~~L~~~L~Kv~~~~--------------~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l-pT 107 (741)
T PRK09866 49 PNIAERHAMLNNELRKISRLE--------------MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL-PT 107 (741)
T ss_pred HHHHHHHHHHHHHHHHHhccc--------------eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc-cE
Confidence 467788888888876655432 4999999999999999999999985 5668999998 44
No 442
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.50 E-value=6.2e-14 Score=122.55 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=54.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
+|+++|++|||||||++.+++.....+.+. .|.......+...+..+.++||||...... .....++.+|.+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGKYRG-------LWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECCEEEEEEECCCCHhhHH-------HHHHHHccCCEE
Confidence 478999999999999999998643223322 222223334556778899999999643211 111235789999
Q ss_pred HHHHhcCCc
Q 015822 144 LMVLDASKS 152 (399)
Q Consensus 144 l~v~d~~~~ 152 (399)
++++|.+.+
T Consensus 73 i~v~D~~~~ 81 (162)
T cd04157 73 IFVIDSSDR 81 (162)
T ss_pred EEEEeCCcH
Confidence 999998764
No 443
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.50 E-value=1.5e-13 Score=120.81 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+++|++|||||||++.+++........|.++.+.....+.++|. .+.++|+||...... .....++.++
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~~ 77 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA-------ITSAYYRGAV 77 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH-------HHHHHHCCCC
Confidence 7999999999999999999988765566688887877788888885 578899998643111 1112346788
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
.+++++|.+.+.. .+.+..++. .+..
T Consensus 78 ~~i~v~d~~~~~s-~~~~~~~~~--------------------------------------------~~~~--------- 103 (165)
T cd01868 78 GALLVYDITKKQT-FENVERWLK--------------------------------------------ELRD--------- 103 (165)
T ss_pred EEEEEEECcCHHH-HHHHHHHHH--------------------------------------------HHHH---------
Confidence 8888888765432 222222221 1110
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|.||+|+.... +...+.. ...++++||+++.|++++.+.+.+.+
T Consensus 104 ---------~---~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 104 ---------H---ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ---------h---CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 0 01136999999999986422 2223322 23489999999999999998887643
No 444
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.50 E-value=3.1e-14 Score=127.73 Aligned_cols=56 Identities=29% Similarity=0.301 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC--CCCCccccceeeeeceEEEECCEeecccCccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~ 120 (399)
...|+|+|++|+|||||+|.|++.. ..+++.+++|.++....+ + ..+.++||||+.
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~ 75 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYG 75 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCc
Confidence 3589999999999999999999975 457889999998775443 3 368899999964
No 445
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.50 E-value=1.3e-13 Score=124.37 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
..|+++|++|||||||++.+++.... . ..+|..+..+.+.+++.++.++|+||...... .....++++|.
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~ad~ 87 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA--Q-HQPTQHPTSEELAIGNIKFTTFDLGGHQQARR-------LWKDYFPEVNG 87 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccccceEEEEECCEEEEEEECCCCHHHHH-------HHHHHhCCCCE
Confidence 48999999999999999999986422 2 24577788888889999999999999643211 11234578999
Q ss_pred hHHHHhcCCc
Q 015822 143 VLMVLDASKS 152 (399)
Q Consensus 143 il~v~d~~~~ 152 (399)
+++|+|++.+
T Consensus 88 ii~vvD~~~~ 97 (184)
T smart00178 88 IVYLVDAYDK 97 (184)
T ss_pred EEEEEECCcH
Confidence 9999998765
No 446
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.50 E-value=1.6e-13 Score=125.48 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccc-cCcccchhhccccCCh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGAS-EGKGRGRQVIAVSKSS 140 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~-~~~~~~~q~~~~~~~~ 140 (399)
+|+|+|.+|||||||++.+++...+....|.++.+...-.+.++|. .+.++||||...... .+..+.......++.+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 6899999999999999999986644333455555555556778884 567899999753210 0000111122346789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|.+.+.. .+.+..+++. +++.
T Consensus 82 d~iilv~D~~~~~S-~~~~~~~~~~----------------------------------------i~~~----------- 109 (198)
T cd04142 82 RAFILVYDICSPDS-FHYVKLLRQQ----------------------------------------ILET----------- 109 (198)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh-----------
Confidence 99999999876432 2222211111 0000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHH--c-CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA--R-QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~--~-~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
........|+++|.||+|+... ++...+. . ..+++++||++|.|+++|.+.+.+.+
T Consensus 110 -----------~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 110 -----------RPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred -----------cccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 0000123699999999998532 1222332 1 24579999999999999988887643
No 447
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.50 E-value=9e-14 Score=123.23 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeece----EEEECCEeecccCccccccccccCcccchhhccccC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG----IIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G----~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~ 138 (399)
.+|+|+|+||||||||++.|++.... +..|+.| .+.++|..+.++|+||..... ......++
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~-------~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~-------~~~~~~~~ 80 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDIS-------HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIR-------PYWRNYFE 80 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCc-------ccCCCCCcceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhc
Confidence 48999999999999999999997431 1223444 788889999999999853211 11122357
Q ss_pred ChhhhHHHHhcCCc
Q 015822 139 SSDIVLMVLDASKS 152 (399)
Q Consensus 139 ~~d~il~v~d~~~~ 152 (399)
.+|.+++++|....
T Consensus 81 ~~~~ii~v~D~~~~ 94 (173)
T cd04155 81 NTDCLIYVIDSADK 94 (173)
T ss_pred CCCEEEEEEeCCCH
Confidence 78888888887653
No 448
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.6e-14 Score=140.92 Aligned_cols=71 Identities=10% Similarity=0.058 Sum_probs=59.4
Q ss_pred HHHHcCC---cccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHHHHHhh-hCCcEEEEcCC-CCHHH
Q 015822 162 ELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFRED-ATVDD 227 (399)
Q Consensus 162 ~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~ll~~l~-~~~~~v~vthd-~~~~~ 227 (399)
.|..+|+ ...++...||||.|-|+++| |++|||||+||...+.-+-.-+. ...|+++|||| -.++.
T Consensus 181 ~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 181 ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNT 260 (582)
T ss_pred HHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHH
Confidence 7888888 56788899999999999998 89999999999998876666665 45799999999 55667
Q ss_pred HHHHH
Q 015822 228 LIDVI 232 (399)
Q Consensus 228 ~~~~i 232 (399)
+|..|
T Consensus 261 V~tdI 265 (582)
T KOG0062|consen 261 VCTDI 265 (582)
T ss_pred HHHHH
Confidence 77665
No 449
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.49 E-value=5.9e-14 Score=123.71 Aligned_cols=139 Identities=20% Similarity=0.267 Sum_probs=89.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
+|+++|++|+|||||+|+|+|.... ....+.+.+++. .++||||....... ........++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~---------~~~~~~v~~~~~--~~iDtpG~~~~~~~---~~~~~~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL---------ARKTQAVEFNDK--GDIDTPGEYFSHPR---WYHALITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc---------CccceEEEECCC--CcccCCccccCCHH---HHHHHHHHHhcCCEE
Confidence 7999999999999999999997532 124455566554 36999997432111 112223346778888
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCC
Q 015822 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (399)
Q Consensus 144 l~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~ 223 (399)
++++|+........ ..
T Consensus 69 l~v~d~~~~~s~~~---~~------------------------------------------------------------- 84 (158)
T PRK15467 69 IYVHGANDPESRLP---AG------------------------------------------------------------- 84 (158)
T ss_pred EEEEeCCCcccccC---HH-------------------------------------------------------------
Confidence 88888764321100 00
Q ss_pred CHHHHHHHHhhccccccEEEEEecCCCCChh--hHHHH-HcC---CCEEEecchhccchHHHHHHHHHHhC
Q 015822 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDKL-ARQ---PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 224 ~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~--~~~~l-~~~---~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
+.+. ...+|.+++.||+|+.... .+..+ .+. .+++++||+++.|+++|.+.+.+.+.
T Consensus 85 ----~~~~----~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 85 ----LLDI----GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ----HHhc----cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 0000 0136899999999986422 22222 222 36899999999999999999988664
No 450
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.49 E-value=1.2e-13 Score=119.35 Aligned_cols=147 Identities=20% Similarity=0.295 Sum_probs=92.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhhH
Q 015822 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVL 144 (399)
Q Consensus 65 valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il 144 (399)
|+|+|++|||||||+|+|++........|.+ ......+..++..+.++|+||..... ......+..+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii 72 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTV--GFNMRKVTKGNVTLKVWDLGGQPRFR-------SMWERYCRGVNAIV 72 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCC--CcceEEEEECCEEEEEEECCCCHhHH-------HHHHHHHhcCCEEE
Confidence 7999999999999999999986543333433 33334566777889999999864211 11122356788888
Q ss_pred HHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCC
Q 015822 145 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 224 (399)
Q Consensus 145 ~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~ 224 (399)
+++|....... ......+.. ++..
T Consensus 73 ~v~d~~~~~~~-~~~~~~~~~----------------------------------------~~~~--------------- 96 (159)
T cd04159 73 YVVDAADRTAL-EAAKNELHD----------------------------------------LLEK--------------- 96 (159)
T ss_pred EEEECCCHHHH-HHHHHHHHH----------------------------------------HHcC---------------
Confidence 88887654221 111111111 0000
Q ss_pred HHHHHHHHhhccccccEEEEEecCCCCChhhHHH----HH------cCCCEEEecchhccchHHHHHHHHH
Q 015822 225 VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK----LA------RQPNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 225 ~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~----l~------~~~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
.....+|+++|+||+|+........ +. ....++++||.++.|++++.+.+.+
T Consensus 97 ---------~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 97 ---------PSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ---------hhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 0012369999999999875432221 11 1124789999999999999988754
No 451
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.48 E-value=1.5e-13 Score=122.04 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
+|+|+|.+|||||||++.+++... .. +.+|+.+....+.+.+..+.++|+||..... ......++.+|.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-------~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR-------PLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECCEEEEEEECCCChhcc-------hHHHHHhccCCEE
Confidence 478999999999999999998642 22 4566666666788888999999999964211 1222345789999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCC
Q 015822 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (399)
Q Consensus 144 l~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~ 223 (399)
++|+|.+.+..- ..+..++.. +++.
T Consensus 71 i~V~D~s~~~s~-~~~~~~~~~----------------------------------------~~~~-------------- 95 (169)
T cd04158 71 VFVVDSSHRDRV-SEAHSELAK----------------------------------------LLTE-------------- 95 (169)
T ss_pred EEEEeCCcHHHH-HHHHHHHHH----------------------------------------HhcC--------------
Confidence 999998764321 111111111 0000
Q ss_pred CHHHHHHHHhhccccccEEEEEecCCCCCh---hhHHHHHcC----C----CEEEecchhccchHHHHHHHHHHh
Q 015822 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ----P----NSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 224 ~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~---~~~~~l~~~----~----~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|.||+|+... ++...+... . .++++||++|.|++++.+.+.+.+
T Consensus 96 ----------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 96 ----------KELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred ----------hhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 00113699999999998632 223332221 1 366789999999999999887755
No 452
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.48 E-value=9.3e-14 Score=124.31 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=59.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCC----------------ccccceeeeeceEEEECCEeecccCccccccccccCc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAA----------------SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 127 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs----------------~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~ 127 (399)
.|+|+|.+|||||||+|+|++...... ..+++|++.....+.+.+..+.++||||.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 389999999999999999998764422 235677777777778888899999999964311
Q ss_pred ccchhhccccCChhhhHHHHhcCCc
Q 015822 128 GRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 128 ~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
......++.+|.+++++|+...
T Consensus 77 ---~~~~~~~~~~d~~i~v~d~~~~ 98 (189)
T cd00881 77 ---SEVIRGLSVSDGAILVVDANEG 98 (189)
T ss_pred ---HHHHHHHHhcCEEEEEEECCCC
Confidence 1223344678888888887543
No 453
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.48 E-value=1.5e-13 Score=120.27 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=56.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
+|+|+|++|||||||++.|+..... .. .+|+......+.+.+..+.++||||..... ......+..+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~i 70 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYYSNTDAI 70 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-Cc--CCccCcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHhcCCCEE
Confidence 4899999999999999999765432 22 235555555677778899999999964311 1122346789999
Q ss_pred HHHHhcCCc
Q 015822 144 LMVLDASKS 152 (399)
Q Consensus 144 l~v~d~~~~ 152 (399)
++++|.+.+
T Consensus 71 i~v~d~~~~ 79 (158)
T cd04151 71 IYVVDSTDR 79 (158)
T ss_pred EEEEECCCH
Confidence 999998764
No 454
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.47 E-value=9.9e-14 Score=121.04 Aligned_cols=53 Identities=34% Similarity=0.407 Sum_probs=41.9
Q ss_pred EEEEcCCCCcHHHHHHHHh--CCCCCCCccccceeeeeceEEEECCEeecccCccccc
Q 015822 65 VALIGFPSVGKSTLLTLLT--GTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (399)
Q Consensus 65 valvG~~gaGKSTLln~L~--g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~ 120 (399)
|+|+|++|||||||+|.|+ +...+.++.+++|.++.. +.+++ .+.++|+||+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~ 56 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYG 56 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCcc
Confidence 7999999999999999999 455667888888876643 23333 78889999864
No 455
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.47 E-value=3.8e-13 Score=118.52 Aligned_cols=151 Identities=18% Similarity=0.181 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+++++|++|||||||++.+++........|.++.+.....+.++|. .+.++|+||..... ......++++|
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~ 76 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGAH 76 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHhCcCC
Confidence 7999999999999999999987654444465555666666777764 57889999853211 11123457899
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
.+++++|.+++.. ...+..++.. +..
T Consensus 77 ~ii~v~d~~~~~s-~~~l~~~~~~--------------------------------------------~~~--------- 102 (166)
T cd01869 77 GIIIVYDVTDQES-FNNVKQWLQE--------------------------------------------IDR--------- 102 (166)
T ss_pred EEEEEEECcCHHH-HHhHHHHHHH--------------------------------------------HHH---------
Confidence 9999999876432 2222222211 110
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|.++|.||+|+.... +...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 103 ----------~--~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 103 ----------Y--ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred ----------h--CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 0 01136999999999986432 2222221 23589999999999999998887654
No 456
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.46 E-value=5.1e-13 Score=116.86 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+++|++|||||||++.+++........|.++.+...-.+.+++ ..+.++|+||..... ......+..+|
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR-------SITSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhCCCC
Confidence 689999999999999999998876555556666666666777777 467899999853211 11122357789
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|...+... +.+..++.. +...
T Consensus 75 ~~ilv~d~~~~~s~-~~~~~~l~~--------------------------------------------~~~~-------- 101 (164)
T smart00175 75 GALLVYDITNRESF-ENLKNWLKE--------------------------------------------LREY-------- 101 (164)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH--------------------------------------------HHHh--------
Confidence 99999888664332 222222211 1100
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.....|+++|+||+|+.... ....+.+ ..+++++||.++.|++++.+.+.+.+
T Consensus 102 -------------~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 102 -------------ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred -------------CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00137999999999986422 2222221 23489999999999999999887754
No 457
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.45 E-value=5.9e-13 Score=117.88 Aligned_cols=151 Identities=20% Similarity=0.184 Sum_probs=98.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+|+|++|||||||++.+++........|.++.+.....+.+++ ..+.++|+||.... .......++.+|
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d 78 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF-------RSITRSYYRGAA 78 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHhccCC
Confidence 799999999999999999998765444445555666666677776 45788999984321 111223457789
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|...+.. .+.+..++. .+..
T Consensus 79 ~il~v~d~~~~~s-~~~~~~~~~--------------------------------------------~~~~--------- 104 (168)
T cd01866 79 GALLVYDITRRET-FNHLTSWLE--------------------------------------------DARQ--------- 104 (168)
T ss_pred EEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHHH---------
Confidence 9999999875432 222222221 1110
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|.||+|+... ++...+.. ...++++||..+.|++++...+.+.+
T Consensus 105 ------------~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 105 ------------HSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred ------------hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00124699999999998632 12222221 23488999999999999887776644
No 458
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.45 E-value=5.6e-13 Score=116.71 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+++++|++|||||||++.+++.. .+++++.|+.+.....+.++|. .+.++||||..... .-....++.+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY-FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS-------AMREQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh-------HHHHHHHhhC
Confidence 479999999999999999998754 3567777776655556667775 47789999954211 0111234678
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...... .+.+..++.. +.+.
T Consensus 75 ~~~ilv~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~----------- 102 (164)
T cd04145 75 EGFLLVFSVTDRGS-FEEVDKFHTQ----------------------------------------ILRV----------- 102 (164)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHH-----------
Confidence 88888888765432 2222211111 0000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHH-c-CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA-R-QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~-~-~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+.... +...+. . ...++++||+++.|++++.+.+.+.+
T Consensus 103 ------------~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 103 ------------K-DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ------------h-CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 0 01236999999999986432 222222 1 23589999999999999998887654
No 459
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.45 E-value=6.8e-13 Score=117.13 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+|+|++|||||||+|++++........+-.+.+.....+.++|.. +.++|+||..... ......++.+|
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 74 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFYRGAD 74 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHhcCCC
Confidence 68999999999999999999876432222323334445556677754 5578999853211 11223467789
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
.+++++|...+.. .+.+..+.. .++..+.
T Consensus 75 ~~i~v~d~~~~~~-~~~~~~~~~----------------------------------------~~~~~~~---------- 103 (172)
T cd01862 75 CCVLVYDVTNPKS-FESLDSWRD----------------------------------------EFLIQAS---------- 103 (172)
T ss_pred EEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHHhcC----------
Confidence 9999988765432 111111111 0011000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCC-----hhhHHHHH-c--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-----IDDVDKLA-R--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~-----~~~~~~l~-~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.......|.++|+||+|+.. .+....+. . ...++++||.++.|++++.+.+.+.+
T Consensus 104 -----------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 104 -----------PSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred -----------ccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 00112479999999999972 22233332 2 24589999999999999998887644
No 460
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.45 E-value=4.4e-13 Score=121.50 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeec-eEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP-GIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~-G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
+|+|+|++|||||||++.+++......+++.|+..... -.+.++|. .+.++||||-.... ......++.+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR-------SVTHAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH-------HhhHHHccCC
Confidence 68999999999999999999877655566555543333 34667764 56788999843211 1112345778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...... .+.+..++. .+.
T Consensus 75 d~~i~v~D~~~~~s-~~~~~~~~~--------------------------------------------~i~--------- 100 (191)
T cd04112 75 HALLLLYDITNKAS-FDNIRAWLT--------------------------------------------EIK--------- 100 (191)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHH---------
Confidence 99999998876432 121222111 110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.. .....|+++|+||+|+... ++...+.. ..+++.+||.++.|+++|.+.+.+.+-
T Consensus 101 ---------~~---~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 101 ---------EY---AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred ---------Hh---CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 1123699999999998632 23333332 135899999999999999999877664
No 461
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.45 E-value=1.4e-13 Score=138.18 Aligned_cols=170 Identities=16% Similarity=0.138 Sum_probs=103.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee--------cccCcccccccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--------QLLDLPGIIEGA 123 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i--------~~iD~~Gl~~~~ 123 (399)
+..|++.. |.++||+|+|||||||+|++++|...|+.. ..+...+ ..++ +.+..+--..
T Consensus 93 d~~~El~~--g~rygLiG~nG~Gkst~L~~i~~~e~P~p~--------~~d~y~l-s~e~~ps~~~av~~v~~~~~~e-- 159 (614)
T KOG0927|consen 93 DVTLELNR--GRRYGLIGPNGSGKSTFLRAIAGREVPIPE--------HIDFYLL-SREIEPSEKQAVQAVVMETDHE-- 159 (614)
T ss_pred eeeEEecC--CceEEEEcCCCCcHhHHHHHHhcCCCCCCc--------ccchhhh-cccCCCchHHHHHHHhhhhHHH--
Confidence 66677777 789999999999999999999999876221 1111111 1111 1111000000
Q ss_pred ccCcccchhhcccc-C--Chhhh---HHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce------
Q 015822 124 SEGKGRGRQVIAVS-K--SSDIV---LMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------ 188 (399)
Q Consensus 124 ~~~~~~~~q~~~~~-~--~~d~i---l~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------ 188 (399)
.....+..+.+... . ..|.+ ..-.+..+......++-.+|..+|+ ...+....||+|++.|.++|
T Consensus 160 ~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~k 239 (614)
T KOG0927|consen 160 RKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQK 239 (614)
T ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcC
Confidence 00000000001000 1 11111 1122233333344456677777777 67788999999999999998
Q ss_pred ---eeeccCCCCCCHHHHHHHHHHhh-hCC-cEEEEcCC-CCHHHHHHHHhh
Q 015822 189 ---FNSTLPLTHVDEKLCYQILHEYK-IHN-AEVLFRED-ATVDDLIDVIEG 234 (399)
Q Consensus 189 ---li~DEpts~LD~~~v~~ll~~l~-~~~-~~v~vthd-~~~~~~~~~i~~ 234 (399)
|++||||+|||.+.+.-+-+.|. +.. .+|+++|+ .++.++|..|-.
T Consensus 240 P~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~ 291 (614)
T KOG0927|consen 240 PDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIH 291 (614)
T ss_pred CCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhhe
Confidence 88999999999998766666665 444 68999997 566788877643
No 462
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.45 E-value=2.9e-13 Score=120.45 Aligned_cols=147 Identities=20% Similarity=0.206 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+++|++|||||||++.+++.... .+ ..|.......+.+++..+.++|+||..... ......++.+|.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~--~~-~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~~d~ 84 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDID--TI-SPTLGFQIKTLEYEGYKLNIWDVGGQKTLR-------PYWRNYFESTDA 84 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--Cc-CCccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCCCE
Confidence 48999999999999999999987421 22 122233344567788889999999864211 111224678999
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++|+|+..+.... .+...+. .++..
T Consensus 85 ~i~v~d~~~~~s~~-~~~~~~~----------------------------------------~~~~~------------- 110 (173)
T cd04154 85 LIWVVDSSDRLRLD-DCKRELK----------------------------------------ELLQE------------- 110 (173)
T ss_pred EEEEEECCCHHHHH-HHHHHHH----------------------------------------HHHhC-------------
Confidence 99999987653211 1111111 11100
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCCh---hhHHHHHc-------CCCEEEecchhccchHHHHHHHH
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR-------QPNSVVISCNLKLNLDRLLARMW 284 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~---~~~~~l~~-------~~~~i~vSa~~~~gl~~L~~~i~ 284 (399)
......|.++|+||+|+... +++..... ..+++.+||++|.|++++.+.+.
T Consensus 111 -----------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 111 -----------ERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred -----------hhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 00123799999999998643 23333221 12489999999999999988764
No 463
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.45 E-value=3.4e-13 Score=120.33 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+++|++|||||||++.+++.... . +..|..++.+.+.+++..+.++|+||..... ......++.+|+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~ 85 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-H--TSPTIGSNVEEIVYKNIRFLMWDIGGQESLR-------SSWNTYYTNTDA 85 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-C--cCCccccceEEEEECCeEEEEEECCCCHHHH-------HHHHHHhhcCCE
Confidence 48999999999999999999865432 1 2345556667788888999999999964211 112234678999
Q ss_pred hHHHHhcCCc
Q 015822 143 VLMVLDASKS 152 (399)
Q Consensus 143 il~v~d~~~~ 152 (399)
+++|+|.+..
T Consensus 86 vi~V~D~s~~ 95 (174)
T cd04153 86 VILVIDSTDR 95 (174)
T ss_pred EEEEEECCCH
Confidence 9999998764
No 464
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.44 E-value=8.3e-14 Score=128.27 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=63.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCC-------------------------------ccccceeeeeceEEEECCEeec
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAA-------------------------------SYEFTTLTCIPGIIHYNDTKIQ 112 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs-------------------------------~~p~TT~~~~~G~i~~~g~~i~ 112 (399)
+|+|+|.+|+|||||+++|++....+. ..+++|+++....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999986543222 1278999999999999999999
Q ss_pred ccCccccccccccCcccchhhccccCChhhhHHHHhcCCc
Q 015822 113 LLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 113 ~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
++||||.... .......++.+|++++|+|+...
T Consensus 81 liDTpG~~~~-------~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 81 IADTPGHEQY-------TRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEECCcHHHH-------HHHHHHhhhhCCEEEEEEECCCC
Confidence 9999996431 12233346788999999988654
No 465
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=7.8e-13 Score=116.47 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
-+|+++|++|||||||++.+.+........+..+.+...-.+.+++ ..+.++|+||..... ......++.+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR-------TITQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhccC
Confidence 3799999999999999999986543211112222344445566777 467889999953211 1122345778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+.. .+.+..++.. +...
T Consensus 77 d~~llv~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~~------- 104 (165)
T cd01864 77 NGAIIAYDITRRSS-FESVPHWIEE--------------------------------------------VEKY------- 104 (165)
T ss_pred CEEEEEEECcCHHH-HHhHHHHHHH--------------------------------------------HHHh-------
Confidence 99999988876532 1222222211 1100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc---CCCEEEecchhccchHHHHHHHHHH
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR---QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
.....|.++|.||+|+.... +...+.+ ...++++||+++.|++++.+.+.+.
T Consensus 105 --------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 105 --------------GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred --------------CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 01236899999999986332 2223322 2347999999999999999888754
No 466
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.44 E-value=6.2e-13 Score=114.68 Aligned_cols=148 Identities=20% Similarity=0.206 Sum_probs=96.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+++|++|||||||+|.+++........+.++.+.....+.+++ ..+.++|+||...... .....++++|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS-------ITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH-------HHHHHhcCCC
Confidence 689999999999999999998876544455555555555555544 5678899999643211 1223457789
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|...+. ..+.+..++.. +..
T Consensus 75 ~ii~v~d~~~~~-~~~~~~~~~~~--------------------------------------------~~~--------- 100 (159)
T cd00154 75 GAILVYDITNRE-SFENLDKWLKE--------------------------------------------LKE--------- 100 (159)
T ss_pred EEEEEEECCCHH-HHHHHHHHHHH--------------------------------------------HHH---------
Confidence 999998887642 22222222211 110
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHH
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMW 284 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~ 284 (399)
......|.++|+||+|+..+ ++...+.. ..+++.+||.++.|++++.+.+.
T Consensus 101 ------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 101 ------------YAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ------------hCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 00023699999999999522 22333322 24589999999999999988764
No 467
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.44 E-value=9.5e-13 Score=116.11 Aligned_cols=151 Identities=18% Similarity=0.171 Sum_probs=93.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+++|++|||||||++.+++........|.++.+...-.+..++ ..+.++|+||..... ......++++|
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~-------~~~~~~~~~~~ 75 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR-------TITTAYYRGAM 75 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHccCCc
Confidence 799999999999999999998763222223222222222344455 457889999854321 11223467899
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
.+++++|...... .+.+.+++. .+...
T Consensus 76 ~~l~v~d~~~~~s-~~~~~~~~~--------------------------------------------~i~~~-------- 102 (165)
T cd01865 76 GFILMYDITNEES-FNAVQDWST--------------------------------------------QIKTY-------- 102 (165)
T ss_pred EEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHHHh--------
Confidence 9999988765432 222222221 11100
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc-C-CCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR-Q-PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~-~-~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.....|.++|.||+|+.... ....+.+ . .+++.+||+++.|+++|.+.+.+.+
T Consensus 103 -------------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 103 -------------SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred -------------CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 01136899999999986432 2222321 1 2489999999999999999887654
No 468
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.44 E-value=8.6e-13 Score=116.64 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
-+|+++|++|||||||++.+++........|.++.+.....+.++|. .+.++|+||..... ......++++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~~~a 76 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYYRGA 76 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHhCCC
Confidence 37999999999999999999987643333344444444456667774 57889999854211 1112345789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+.. .+.+.+++.. +..
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~-------- 103 (167)
T cd01867 77 MGIILVYDITDEKS-FENIRNWMRN--------------------------------------------IEE-------- 103 (167)
T ss_pred CEEEEEEECcCHHH-HHhHHHHHHH--------------------------------------------HHH--------
Confidence 99999988765432 2222222211 110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|.||+|+.... ....+.+ ..+++.+||.++.|++++.+.+.+.+
T Consensus 104 -----------~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 104 -----------H--ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -----------h--CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 01236999999999987321 2222221 23579999999999999998887654
No 469
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.44 E-value=1.2e-12 Score=114.51 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+++++|++|||||||+++|++........|..+.+.....+.+++ ..+.++|+||...... .....++.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT-------LTSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh-------hhHHHhCCCC
Confidence 689999999999999999998764332333333333334455555 4678899999542211 1122357789
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
.+++++|...+.. .+.+..++.. +..
T Consensus 75 ~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~--------- 100 (161)
T cd01863 75 GVILVYDVTRRDT-FTNLETWLNE--------------------------------------------LET--------- 100 (161)
T ss_pred EEEEEEECCCHHH-HHhHHHHHHH--------------------------------------------HHH---------
Confidence 9999988765432 1222222111 100
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCCh----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHH
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
. ......|.++|.||+|+... ++...+.. ..+++++||++|.|++++++.+.+.
T Consensus 101 ---------~--~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 101 ---------Y--STNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ---------h--CCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 0 01123689999999998722 22222221 2348999999999999999887654
No 470
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=5.6e-13 Score=148.55 Aligned_cols=163 Identities=18% Similarity=0.228 Sum_probs=111.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |..+||||+.||||||||.+|+|.... .+|.+.++|. + ++..
T Consensus 539 dIn~~i~~--G~lvaVvG~vGsGKSSLL~AiLGEm~~-----------~sG~v~v~gs-i----------------aYv~ 588 (1381)
T KOG0054|consen 539 DINFEIKK--GQLVAVVGPVGSGKSSLLSAILGEMPK-----------LSGSVAVNGS-V----------------AYVP 588 (1381)
T ss_pred ceeEEecC--CCEEEEECCCCCCHHHHHHHHhcCccc-----------ccceEEEcCe-E----------------EEec
Confidence 78888888 789999999999999999999999866 8899999875 2 2233
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. -|+|++-- .-+.++-++.++...+ .+..+--+||||||||+.+|
T Consensus 589 Q~pWI~ngTvreNILFG~-----~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ad 663 (1381)
T KOG0054|consen 589 QQPWIQNGTVRENILFGS-----PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDAD 663 (1381)
T ss_pred cccHhhCCcHHHhhhcCc-----cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCC
Confidence 44322222 34454421 1122233333333222 45566789999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh----hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~----~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l 259 (399)
+++|.|+|++|...-+.++++.- ...|+|++||....-. ....|+|+...-+......+++
T Consensus 664 IYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~----------~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 664 IYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP----------HADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred EEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh----------hCCEEEEecCCeEecccCHHHH
Confidence 99999999999986655555542 3459999999755322 2467888887665544444444
No 471
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.44 E-value=8.7e-13 Score=115.59 Aligned_cols=156 Identities=18% Similarity=0.179 Sum_probs=95.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+++|++|||||||++.+++...+....|..+.+...-.+.++| ..+.++||||..... ......++.+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~d 74 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL-------EVRNEFYKDTQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH-------HHHHHHhccCC
Confidence 689999999999999999999775433334333444344566665 457789999963211 01112357789
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|.+.+.. .+.+..++..+ .+... . |
T Consensus 75 ~~ilv~D~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~-~-------~ 105 (168)
T cd04119 75 GVLLVYDVTDRQS-FEALDSWLKEM----------------------------------------KQEGG-P-------H 105 (168)
T ss_pred EEEEEEECCCHHH-HHhHHHHHHHH----------------------------------------HHhcc-c-------c
Confidence 9999998876532 12222222111 00000 0 0
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHH-c-CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA-R-QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~-~-~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|.++|.||+|+... ++...+. + ...++.+||+++.|++++.+.+.+.+
T Consensus 106 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 106 ------------GNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ------------ccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00123699999999998632 2222222 1 13488999999999999999887654
No 472
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.43 E-value=5.3e-13 Score=126.77 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCC---cccccccccchhhHhhcCce------------eeeccCCCCCCHHHHHHHHHHhh---h-CCcEE
Q 015822 157 QILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEYK---I-HNAEV 217 (399)
Q Consensus 157 ~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------------li~DEpts~LD~~~v~~ll~~l~---~-~~~~v 217 (399)
....+.|+.+|+ .+++++..||+||+||+.++ +++||||++||......+++.+. . ..++|
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvI 226 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVV 226 (261)
T ss_pred HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 456678888988 36889999999999999876 78999999999986665555443 2 45999
Q ss_pred EEcCCCCHHH
Q 015822 218 LFREDATVDD 227 (399)
Q Consensus 218 ~vthd~~~~~ 227 (399)
+++|+.....
T Consensus 227 iitH~~~~i~ 236 (261)
T cd03271 227 VIEHNLDVIK 236 (261)
T ss_pred EEeCCHHHHH
Confidence 9999986544
No 473
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.43 E-value=1.2e-12 Score=121.06 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC---EeecccCccccccccccCcccchhhccccCCh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g---~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
+|+|+|++|||||||++.+++........|..+.+...-.+.+++ ..+.++||+|..... .+ ....++++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~----~l---~~~~~~~a 74 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG----KM---LDKYIYGA 74 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH----HH---HHHHhhcC
Confidence 689999999999999999998654433346666677666677754 567899999853211 11 11235789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|.+.+... +.+..++.. +..
T Consensus 75 d~iilV~D~t~~~s~-~~~~~w~~~--------------------------------------------l~~-------- 101 (215)
T cd04109 75 HAVFLVYDVTNSQSF-ENLEDWYSM--------------------------------------------VRK-------- 101 (215)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHH--------------------------------------------HHH--------
Confidence 999999998765332 222222111 110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHcC--CCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~~--~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.........|.++|.||+|+.... ....+.+. ...+.+||++|.|++++.+.+.+.+.
T Consensus 102 ----------~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 102 ----------VLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ----------hccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000001135789999999986322 22233221 24788999999999999998877654
No 474
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.43 E-value=2.3e-13 Score=124.03 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=51.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCc--cccceeeeeceEEEECCEeecccCccccccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAAS--YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~--~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~ 122 (399)
+|+|+|+||||||||+|+|+|.....+. .+++|.++..+...++|..+.++||||+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~ 62 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDT 62 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCc
Confidence 6899999999999999999998754333 5789999999999999999999999998753
No 475
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.43 E-value=6.5e-13 Score=115.41 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+|+|++|||||||++++++.. .++.++.||.+.....+.+++ ..+.++|+||..... ......+..+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHHhcCC
Confidence 48999999999999999999876 567788888888888888875 467889999854311 11222356678
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|...+... ..+..... .+.
T Consensus 73 ~~i~v~d~~~~~s~-~~~~~~~~--------------------------------------------~~~---------- 97 (160)
T cd00876 73 GFILVYSITDRESF-EEIKGYRE--------------------------------------------QIL---------- 97 (160)
T ss_pred EEEEEEECCCHHHH-HHHHHHHH--------------------------------------------HHH----------
Confidence 88888877654321 11111110 000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHH-cC-CCEEEecchhccchHHHHHHHHHH
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA-RQ-PNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~-~~-~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
+. . .....|+++|+||+|+.... +...+. .. .+++++||.++.|++++.+.+.+.
T Consensus 98 --------~~-~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 98 --------RV-K-DDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred --------Hh-c-CCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 00 0 01247999999999987421 222222 22 368999999999999999888653
No 476
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.42 E-value=1.4e-12 Score=113.56 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=93.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+++|++|||||||+|.+++.. .+..++.|+.+.....+.+++.. +.++||+|..... .-....++.+|
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~~~~~ 74 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTGE 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH-------HHHHHHHhcCC
Confidence 79999999999999999999764 23456556655555566777744 6779999853210 01112345677
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
.++++++...... .+.+..++.. +++.
T Consensus 75 ~~i~v~~~~~~~s-~~~~~~~~~~----------------------------------------i~~~------------ 101 (162)
T cd04138 75 GFLCVFAINSRKS-FEDIHTYREQ----------------------------------------IKRV------------ 101 (162)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh------------
Confidence 7777777654321 1111111111 0000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+.... +...+.+ ...++++||+++.|++++.+.+.+.+
T Consensus 102 ----------~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 102 ----------K--DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ----------c--CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 0 01246999999999986422 2222221 23588999999999999998887643
No 477
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.42 E-value=5.4e-13 Score=120.76 Aligned_cols=148 Identities=24% Similarity=0.286 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCc------------------cccceeeeeceEEE--ECCEeecccCccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAAS------------------YEFTTLTCIPGIIH--YNDTKIQLLDLPGIIEG 122 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~------------------~p~TT~~~~~G~i~--~~g~~i~~iD~~Gl~~~ 122 (399)
..|+++|+.++|||||+.+|++....+.+ ..+.|.+.....+. .++..+.++|+||...
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~- 82 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED- 82 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc-
Confidence 37999999999999999999866533221 23566666667777 7889999999999643
Q ss_pred cccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHH
Q 015822 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (399)
Q Consensus 123 ~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~ 202 (399)
+..+....+..+|.+++|+|+.......
T Consensus 83 ------f~~~~~~~~~~~D~ailvVda~~g~~~~---------------------------------------------- 110 (188)
T PF00009_consen 83 ------FIKEMIRGLRQADIAILVVDANDGIQPQ---------------------------------------------- 110 (188)
T ss_dssp ------HHHHHHHHHTTSSEEEEEEETTTBSTHH----------------------------------------------
T ss_pred ------eeecccceecccccceeeeecccccccc----------------------------------------------
Confidence 2234445577889999999886532211
Q ss_pred HHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChh---hHHHHH-----c-------CCCEEE
Q 015822 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLA-----R-------QPNSVV 267 (399)
Q Consensus 203 v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~---~~~~l~-----~-------~~~~i~ 267 (399)
..+.+..+. ....|.++|+||+|+...+ ..+.+. . ..++++
T Consensus 111 ~~~~l~~~~------------------------~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~ 166 (188)
T PF00009_consen 111 TEEHLKILR------------------------ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIP 166 (188)
T ss_dssp HHHHHHHHH------------------------HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEE
T ss_pred ccccccccc------------------------ccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEE
Confidence 111111110 1125899999999998321 112221 0 124999
Q ss_pred ecchhccchHHHHHHHHHHh
Q 015822 268 ISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 268 vSa~~~~gl~~L~~~i~~~l 287 (399)
+||.+|.|+++|++.+.+.+
T Consensus 167 ~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 167 ISALTGDGIDELLEALVELL 186 (188)
T ss_dssp EBTTTTBTHHHHHHHHHHHS
T ss_pred EecCCCCCHHHHHHHHHHhC
Confidence 99999999999999998876
No 478
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.41 E-value=1.9e-12 Score=114.13 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+++++|++|||||||++.+++........|..+.+.....+.++|.. +.++|++|..... ......+..+
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~ 80 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------SITQSYYRSA 80 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhcCC
Confidence 489999999999999999999655443444555666777778888854 6678999853211 1112346778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|.+.... .+.+..++. .+..
T Consensus 81 d~~i~v~d~~~~~s-~~~~~~~~~--------------------------------------------~l~~-------- 107 (169)
T cd04114 81 NALILTYDITCEES-FRCLPEWLR--------------------------------------------EIEQ-------- 107 (169)
T ss_pred CEEEEEEECcCHHH-HHHHHHHHH--------------------------------------------HHHH--------
Confidence 99999988765422 111111111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChhh-----HHHHHc--CCCEEEecchhccchHHHHHHHHHH
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-----~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
. .....|.++|+||+|+....+ ...+.+ ...++.+||+++.|++++.+.+.+.
T Consensus 108 -----------~--~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 108 -----------Y--ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred -----------h--CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 0 011258899999999864322 122221 2348899999999999999988764
No 479
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.41 E-value=9.6e-13 Score=118.54 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEE---CCEeecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~---~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+++|.+|||||||++.+++... +..+|.++.+...-.+.+ .+..+.++||||..... ......+++
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~ 75 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR-------PLWKSYTRC 75 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH-------HHHHHHhcc
Confidence 4799999999999999999987543 233443332222222322 34678999999853211 112234678
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++++|++.+.. .+.+..++.. ++..
T Consensus 76 ~d~ii~v~D~~~~~~-~~~~~~~~~~----------------------------------------i~~~---------- 104 (183)
T cd04152 76 TDGIVFVVDSVDVER-MEEAKTELHK----------------------------------------ITRF---------- 104 (183)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHhh----------
Confidence 999999999876432 1111111111 0000
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh---hhHHHHHc---C-----CCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR---Q-----PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~---~~~~~l~~---~-----~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. ....+|+++|+||+|+... +++..+.. . .+++++||+++.|+++|.+.+.+.+
T Consensus 105 ------------~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 105 ------------S--ENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ------------h--hcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 0 0123799999999998632 33333221 1 1367899999999999998887665
No 480
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.41 E-value=1.7e-12 Score=115.32 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeee-eceEEEECCE--eecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTC-IPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~-~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|.+|||||||++.+++....+.+|..|+... ..-.+.++|. .+.+.|++|-.... ......+++
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------~~~~~~~~~ 77 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI-------LLNDAELAA 77 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc-------ccchhhhhc
Confidence 4799999999999999999998764435665555332 2345677774 45667887643211 111123578
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++++|.+.+.. .+.+..++. .+.
T Consensus 78 ~d~~llv~d~~~~~s-~~~~~~~~~--------------------------------------------~~~-------- 104 (169)
T cd01892 78 CDVACLVYDSSDPKS-FSYCAEVYK--------------------------------------------KYF-------- 104 (169)
T ss_pred CCEEEEEEeCCCHHH-HHHHHHHHH--------------------------------------------Hhc--------
Confidence 999999999876532 111111111 110
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc---CCCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.....|+++|+||+|+.... +.+.+.+ ....+++||.++.|++++.+.+.+.+
T Consensus 105 ---------------~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 105 ---------------MLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred ---------------cCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 01136999999999986322 2233322 22468999999999999998887754
No 481
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.41 E-value=9.5e-13 Score=116.96 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+++|.+|||||||++.+..... ....|.++. ....+...+..+.++||+|..... ......++++|+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~--~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~a~~ 79 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGF--NVETVTYKNVKFNVWDVGGQDKIR-------PLWRHYYTGTQG 79 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCC-ccccCCccc--ceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhccCCE
Confidence 4899999999999999999976442 222233332 233555677889999999964311 111224678999
Q ss_pred hHHHHhcCCc
Q 015822 143 VLMVLDASKS 152 (399)
Q Consensus 143 il~v~d~~~~ 152 (399)
+++|+|++.+
T Consensus 80 ii~v~D~t~~ 89 (168)
T cd04149 80 LIFVVDSADR 89 (168)
T ss_pred EEEEEeCCch
Confidence 9999998764
No 482
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.41 E-value=2e-12 Score=113.15 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||++.+.+.. .+..++.|+.+.....+.+++.. +.++||||...... -....++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 73 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA-------MRDLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch-------HHHHHhhcC
Confidence 379999999999999999998654 33556666666656667777754 56799999642111 011234678
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+... +.+..++. .+..
T Consensus 74 ~~~ilv~d~~~~~s~-~~~~~~~~--------------------------------------------~i~~-------- 100 (163)
T cd04136 74 QGFVLVYSITSQSSF-NDLQDLRE--------------------------------------------QILR-------- 100 (163)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHH--------------------------------------------HHHH--------
Confidence 888888887654321 11111111 1100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.. .....|.++|.||+|+.... ....+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 101 -----------~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 101 -----------VK-DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred -----------hc-CCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 00 01236999999999986422 1222222 13579999999999999998887643
No 483
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.40 E-value=9.7e-13 Score=146.69 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=120.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.|++ |++|||||++|||||||.++|-+...+ ..|.|.+||.++.-+..-.+ +..++..+
T Consensus 1158 ~is~~I~p--~eKVGIVGRTGaGKSSL~~aLFRl~e~-----------~~G~I~IDgvdI~~igL~dL----RsrlsIIP 1220 (1381)
T KOG0054|consen 1158 GISFTIKP--GEKVGIVGRTGAGKSSLILALFRLVEP-----------AEGEILIDGVDISKIGLHDL----RSRLSIIP 1220 (1381)
T ss_pred CceEEEcC--CceEEEeCCCCCCHHHHHHHHHHhcCc-----------cCCeEEEcCeecccccHHHH----HhcCeeeC
Confidence 78888888 779999999999999999999998644 89999999998866543222 33455566
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+... +-.=+|..+.- ..+.+-+.|+..++ .+..--.++|-||||-+++| +
T Consensus 1221 QdPvLFsGT--vR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skIL 1297 (1381)
T KOG0054|consen 1221 QDPVLFSGT--VRFNLDPFDEY-SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKIL 1297 (1381)
T ss_pred CCCceecCc--cccccCccccc-CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEE
Confidence 655444321 00011222211 12334445555443 22333478999999999999 9
Q ss_pred eeccCCCCCCHHH---HHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHHcC
Q 015822 190 NSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ 262 (399)
Q Consensus 190 i~DEpts~LD~~~---v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~~~ 262 (399)
++||.|+++|.++ +++.+++--.+.|++.|.|.+...- ..+.|+|+.+..+..-.....|.+.
T Consensus 1298 vLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVm----------d~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1298 VLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVM----------DSDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred EEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhh----------hcCeEEEeeCCeEeecCChHHHHhC
Confidence 9999999999984 4444443334459999999876422 2478999998877644444455433
No 484
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.40 E-value=1.9e-12 Score=141.76 Aligned_cols=158 Identities=16% Similarity=0.109 Sum_probs=109.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++=.+.+ |...||+|.+|||||||||.|+|.. |.-.++|.|.++|.|..- + ...+..|+..
T Consensus 809 ~V~G~~kP--G~LTALMG~SGAGKTTLLdvLA~R~---------t~G~I~Gdi~i~G~p~~q-~------tF~R~~GYvq 870 (1391)
T KOG0065|consen 809 NVSGAFKP--GVLTALMGESGAGKTTLLDVLAGRK---------TGGYIEGDILISGFPKDQ-E------TFARVSGYVE 870 (1391)
T ss_pred cCceEecC--CceeehhcCCCCchHHHHHHHhcCc---------ccceEEeEEEECCeeCch-h------hhccccceee
Confidence 44444555 7799999999999999999999986 223489999999998642 1 2234567766
Q ss_pred hhccccCChhhh---HHHHhcC-----CcHHHHHHHHHHHHHcCC--cccccc----cccchhhHhhcCce---------
Q 015822 132 QVIAVSKSSDIV---LMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRP----PQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 132 q~~~~~~~~d~i---l~v~d~~-----~~~~~~~~i~~~L~~~gi--~~~~~~----~~LS~g~kqr~~ia--------- 188 (399)
|.--.+....+- .+-.... ...+..+.+++.++.+++ ..+.-+ .-||.+||+|+.|+
T Consensus 871 Q~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ 950 (1391)
T KOG0065|consen 871 QQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSS 950 (1391)
T ss_pred cccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCce
Confidence 654444444332 2211111 223344778888888887 233434 45999999999998
Q ss_pred -eeeccCCCCCCHHH---HHHHHHHhhhCC-cEEEEcCCCCHHH
Q 015822 189 -FNSTLPLTHVDEKL---CYQILHEYKIHN-AEVLFREDATVDD 227 (399)
Q Consensus 189 -li~DEpts~LD~~~---v~~ll~~l~~~~-~~v~vthd~~~~~ 227 (399)
|++||||||||... +.++++.+...+ +++..-|.++.+=
T Consensus 951 ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~i 994 (1391)
T KOG0065|consen 951 ILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDI 994 (1391)
T ss_pred eEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHH
Confidence 88999999999885 455555555444 8888889887643
No 485
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.40 E-value=1.2e-12 Score=114.14 Aligned_cols=146 Identities=19% Similarity=0.181 Sum_probs=93.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
+|+++|.+|||||||++++++.... ....|.......+.+.+..+.++|+||..... ......+..+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~~ 70 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWKHYYENTNGI 70 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCcCcceEEEEECCEEEEEEECCCChhhH-------HHHHHHhccCCEE
Confidence 4899999999999999999998621 12334444445677788899999999964321 1122345678999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCC
Q 015822 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (399)
Q Consensus 144 l~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~ 223 (399)
++++|+..+..... +...+.. ++..
T Consensus 71 i~v~D~~~~~~~~~-~~~~~~~----------------------------------------~~~~-------------- 95 (158)
T cd00878 71 IFVVDSSDRERIEE-AKEELHK----------------------------------------LLNE-------------- 95 (158)
T ss_pred EEEEECCCHHHHHH-HHHHHHH----------------------------------------HHhC--------------
Confidence 99999876532111 1111111 0000
Q ss_pred CHHHHHHHHhhccccccEEEEEecCCCCChh---hHHHHHc-------CCCEEEecchhccchHHHHHHHH
Q 015822 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR-------QPNSVVISCNLKLNLDRLLARMW 284 (399)
Q Consensus 224 ~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~---~~~~l~~-------~~~~i~vSa~~~~gl~~L~~~i~ 284 (399)
. .....|+++|+||+|+.... +...... ..+++++||+++.|++++.+.|.
T Consensus 96 --------~--~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 96 --------E--ELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred --------c--ccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 0 01236999999999987533 2222111 12478899999999999987764
No 486
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.40 E-value=9.7e-13 Score=129.86 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
|+.++++||||-|||||.+.|+|...| ++|. ..+..+.+ -+|.+..-.+.+
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikP-----------deg~--~~~~~vSy----------------KPQyI~~~~~gt 417 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKP-----------DEGS--EEDLKVSY----------------KPQYISPDYDGT 417 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccC-----------CCCC--CccceEee----------------cceeecCCCCCc
Confidence 789999999999999999999999765 6664 11111111 122221111111
Q ss_pred hhHHHHhcCCc-HHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCHHH---HHHH
Q 015822 142 IVLMVLDASKS-EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL---CYQI 206 (399)
Q Consensus 142 ~il~v~d~~~~-~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~---v~~l 206 (399)
+-.++...... ....-.-.+++.-+++ .+++++..|||||.||++|| +++|||.++||.++ +..+
T Consensus 418 V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred HHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 11111111110 0011112334444555 57889999999999999998 89999999999984 4445
Q ss_pred HHHhhhC--CcEEEEcCCCCHHHHH
Q 015822 207 LHEYKIH--NAEVLFREDATVDDLI 229 (399)
Q Consensus 207 l~~l~~~--~~~v~vthd~~~~~~~ 229 (399)
++.+-.. .+.++|.||+-+.+.+
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhh
Confidence 5544433 3889999998876643
No 487
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.40 E-value=5.6e-13 Score=102.34 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=52.9
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCeEEEEe
Q 015822 302 DFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVK 366 (399)
Q Consensus 302 ~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dvv~i~~ 366 (399)
.++++|++++ |+|+.|+|..||++|.++|+||++ ++ .+|++|+||+|+|||||+|++
T Consensus 20 ~~~d~~~l~~---GaTv~D~A~~IHtdi~~~f~~Ai~----~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 20 VLPDAFLLPK---GSTARDLAYAIHTDIGDGFLHAID----AR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred CccceEEECC---CCCHHHHHHHHHHHHHhcceeeEE----ee-CCEEeCCCcEecCCCEEEEeC
Confidence 4677999999 999999999999999999999988 45 699999999999999999985
No 488
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.39 E-value=3.4e-12 Score=112.30 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+++|.+|||||||++.+.+........|....+...-.+.+++. .+.++||+|..... ......++.+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 74 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ-------TMHASYYHKAH 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhCCCC
Confidence 6899999999999999998875432111111111122223445554 57789999853211 11123467889
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|.+.+... +.+..++ ..+.
T Consensus 75 ~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~i~---------- 99 (161)
T cd04124 75 ACILVFDVTRKITY-KNLSKWY--------------------------------------------EELR---------- 99 (161)
T ss_pred EEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHHH----------
Confidence 99999987654321 1122221 1111
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChhh--HHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~--~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+..... ...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 100 ------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 100 ------------EYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred ------------HhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0011369999999999853211 112221 23578999999999999998887643
No 489
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.39 E-value=1e-12 Score=114.79 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=52.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC-CEeecccCccccccccccCcccchhhccccCChhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~-g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
+|+|+|++|||||||++.+++.... ...| |.......+.++ +..+.++|+||..... ......+..+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKHLSLTVWDVGGQEKMR-------TVWKCYLENTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCceEEEEEECCCCHhHH-------HHHHHHhccCCE
Confidence 4789999999999999999987532 2222 333333445554 4678999999864211 112224577899
Q ss_pred hHHHHhcCCc
Q 015822 143 VLMVLDASKS 152 (399)
Q Consensus 143 il~v~d~~~~ 152 (399)
+++++|.+.+
T Consensus 71 iv~v~D~~~~ 80 (160)
T cd04156 71 LVYVVDSSDE 80 (160)
T ss_pred EEEEEECCcH
Confidence 9999988765
No 490
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.39 E-value=8.8e-13 Score=120.97 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=37.0
Q ss_pred ccEEEEEecCCCCChhhH----HHHH---c-----CCCEEEecchhccchHHHHHHHHHHh
Q 015822 239 MKCVYVYNKIDVIGIDDV----DKLA---R-----QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~~~----~~l~---~-----~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
+|+++|+||+|+...... +.+. . ..+++++||+++.|+++|.+.+.+.+
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred CcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 578999999999864322 2221 1 23589999999999999999998765
No 491
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.39 E-value=2.6e-12 Score=112.27 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=94.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+++|++|||||||++.+++.. .+.++.+|+.+.....+.+++. .+.++|+||..... ......++.+|
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~ 73 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-------AIRDNYHRSGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-------HHHHHHhhcCC
Confidence 68999999999999999999754 3356777776666666667654 57789999853211 11112346667
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
.++++++...+.. ...+...+..+ +.
T Consensus 74 ~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~------------- 99 (164)
T cd04139 74 GFLLVFSITDMES-FTATAEFREQI----------------------------------------LR------------- 99 (164)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHH----------------------------------------HH-------------
Confidence 7777766654321 11111111110 00
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCCh--hh---HHHHHc-C-CCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DD---VDKLAR-Q-PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~--~~---~~~l~~-~-~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
+. ....+|+++|+||+|+... .. ...+.. + .+++.+||.++.|+++|.+.+.+.+
T Consensus 100 ----------~~-~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 100 ----------VK-DDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred ----------hc-CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 0123799999999998752 11 122221 2 3589999999999999999887755
No 492
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.39 E-value=2.5e-12 Score=112.46 Aligned_cols=148 Identities=19% Similarity=0.228 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC----CEeecccCccccccccccCcccchhhccccCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN----DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~----g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
+|+++|.+|+|||||++.+++........|..+.+.....+.++ +..+.++||||..... ......++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~ 74 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD-------AITKAYYRG 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH-------HhHHHHhcC
Confidence 68999999999999999999865332222333444444555555 3568889999853211 111224577
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|.++++++...+.. .+.+..++. .+.
T Consensus 75 ~~~~v~v~d~~~~~s-~~~l~~~~~--------------------------------------------~~~-------- 101 (162)
T cd04106 75 AQACILVFSTTDRES-FEAIESWKE--------------------------------------------KVE-------- 101 (162)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHH--------
Confidence 888888888765432 122222111 110
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHH
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
......|.++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+
T Consensus 102 --------------~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 102 --------------AECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred --------------HhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 00113699999999998642 22223322 235889999999999999888764
No 493
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.39 E-value=1.3e-12 Score=116.52 Aligned_cols=147 Identities=20% Similarity=0.305 Sum_probs=91.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC---------------CccccceeeeeceEEEE-----CCEeecccCcccccccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEA---------------ASYEFTTLTCIPGIIHY-----NDTKIQLLDLPGIIEGA 123 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~v---------------s~~p~TT~~~~~G~i~~-----~g~~i~~iD~~Gl~~~~ 123 (399)
.|+|+|.+|+|||||++++++....+ ....++|.++..-.+.+ .+..+.++||||.....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998743111 11235566555444444 24567899999975421
Q ss_pred ccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHH
Q 015822 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLC 203 (399)
Q Consensus 124 ~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v 203 (399)
......++.+|++++|+|......... ... .
T Consensus 82 -------~~~~~~~~~ad~~i~v~D~~~~~~~~~-~~~-----------------------------------------~ 112 (179)
T cd01890 82 -------YEVSRSLAACEGALLLVDATQGVEAQT-LAN-----------------------------------------F 112 (179)
T ss_pred -------HHHHHHHHhcCeEEEEEECCCCccHhh-HHH-----------------------------------------H
Confidence 122224567888888888765321110 000 0
Q ss_pred HHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh---HHHHH---cCC--CEEEecchhccc
Q 015822 204 YQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDKLA---RQP--NSVVISCNLKLN 275 (399)
Q Consensus 204 ~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~---~~~l~---~~~--~~i~vSa~~~~g 275 (399)
.. + . ...+|.++|+||+|+..... ...+. ..+ .++++||++|.|
T Consensus 113 ~~----~---------------------~---~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (179)
T cd01890 113 YL----A---------------------L---ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLG 164 (179)
T ss_pred HH----H---------------------H---HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCC
Confidence 00 0 0 01368999999999863211 12222 222 488999999999
Q ss_pred hHHHHHHHHHHh
Q 015822 276 LDRLLARMWEEM 287 (399)
Q Consensus 276 l~~L~~~i~~~l 287 (399)
+++|.+.+.+.+
T Consensus 165 i~~l~~~l~~~~ 176 (179)
T cd01890 165 VEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHhhC
Confidence 999999887654
No 494
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.39 E-value=2e-13 Score=129.42 Aligned_cols=74 Identities=9% Similarity=-0.013 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCc----------------------ccccccccchhhHhhcCce-------------eeeccCCCCCCHH
Q 015822 157 QILTKELEAVGLR----------------------LNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEK 201 (399)
Q Consensus 157 ~~i~~~L~~~gi~----------------------~~~~~~~LS~g~kqr~~ia-------------li~DEpts~LD~~ 201 (399)
+.+.+.|+.+|+. .+.++..||+||+|+++++ +++||||++||..
T Consensus 125 ~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~ 204 (251)
T cd03273 125 QRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLS 204 (251)
T ss_pred HHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHH
Confidence 4566777777763 2367889999999998775 7789999999998
Q ss_pred HHHHHHHHhh---hCCcEEEEcCCCCHHHHHH
Q 015822 202 LCYQILHEYK---IHNAEVLFREDATVDDLID 230 (399)
Q Consensus 202 ~v~~ll~~l~---~~~~~v~vthd~~~~~~~~ 230 (399)
....+++.+. ...++|++||+....+.+|
T Consensus 205 ~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d 236 (251)
T cd03273 205 HTQNIGRMIKTHFKGSQFIVVSLKEGMFNNAN 236 (251)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHhCC
Confidence 7666666554 2337999999955444443
No 495
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.39 E-value=2.4e-12 Score=112.94 Aligned_cols=151 Identities=22% Similarity=0.227 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+|+|++|||||||++++.+... +..++.|+.+...-.+.+++. .+.++||||..... ......++.+|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~~~~~~~~~~ 73 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS-------AMRDQYMRTGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccch-------HHHHHHHhhCC
Confidence 689999999999999999998653 345555665555445566664 56789999854211 01112346678
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
.+++++|...+.. .+.+..+... +.+..
T Consensus 74 ~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~~~----------- 101 (164)
T smart00173 74 GFLLVYSITDRQS-FEEIKKFREQ----------------------------------------ILRVK----------- 101 (164)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHhc-----------
Confidence 8778877765422 1111111100 00000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.....|+++|.||+|+.... ....+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 102 -------------~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 102 -------------DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred -------------CCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 01136999999999986422 1222222 23589999999999999999887754
No 496
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.39 E-value=5.5e-13 Score=114.51 Aligned_cols=74 Identities=27% Similarity=0.419 Sum_probs=46.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
+|+|+|.+|||||||+|.+++.... ++. +..+.+.+ .++||||...... .+.......++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~------t~~~~~~~---~~iDt~G~~~~~~---~~~~~~~~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK------TQAVEYND---GAIDTPGEYVENR---RLYSALIVTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc------ceeEEEcC---eeecCchhhhhhH---HHHHHHHHHhhcCCEE
Confidence 6899999999999999999987532 211 12334433 5689999631100 0111112236788888
Q ss_pred HHHHhcCCc
Q 015822 144 LMVLDASKS 152 (399)
Q Consensus 144 l~v~d~~~~ 152 (399)
++|+|+..+
T Consensus 67 ilv~d~~~~ 75 (142)
T TIGR02528 67 ALVQSATDP 75 (142)
T ss_pred EEEecCCCC
Confidence 888887654
No 497
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.38 E-value=1.6e-12 Score=114.35 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=54.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
+|+++|.+|||||||++.+...... +..| |.......+.+.+..+.++|+||..... ......++++|.+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~~ 71 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCC--CCCcceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCCEE
Confidence 6899999999999999999643322 2222 3333344567778889999999863211 1112346889999
Q ss_pred HHHHhcCCc
Q 015822 144 LMVLDASKS 152 (399)
Q Consensus 144 l~v~d~~~~ 152 (399)
++|+|.+..
T Consensus 72 i~v~D~~~~ 80 (159)
T cd04150 72 IFVVDSNDR 80 (159)
T ss_pred EEEEeCCCH
Confidence 999998764
No 498
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.38 E-value=2.5e-12 Score=115.01 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+++|++|||||||++.+..... ....| |.......+.+.+..+.++|+||..... ......++++|+
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~ad~ 83 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES-VTTIP--TIGFNVETVTYKNISFTVWDVGGQDKIR-------PLWRHYYTNTQG 83 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCcCC--ccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHhCCCCE
Confidence 4899999999999999999953221 12223 3333333566778889999999864311 111223688999
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++++|.+.+... +.+.+.+.. ++..
T Consensus 84 ii~v~D~t~~~s~-~~~~~~l~~----------------------------------------~~~~------------- 109 (175)
T smart00177 84 LIFVVDSNDRDRI-DEAREELHR----------------------------------------MLNE------------- 109 (175)
T ss_pred EEEEEECCCHHHH-HHHHHHHHH----------------------------------------HhhC-------------
Confidence 9999998765321 111111111 0000
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCCh---hhHHHHHcC-------CCEEEecchhccchHHHHHHHHHHh
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-------PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~---~~~~~l~~~-------~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+... +++...... ..++++||++|.|++++.+.|.+.+
T Consensus 110 -----------~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 110 -----------DELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred -----------HhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 00113699999999998632 233222111 1256899999999999999887654
No 499
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.38 E-value=2.5e-12 Score=116.45 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=96.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+++|.+|||||||++.+++.. ...+++.|+.+...-.+.++|.. ++++||||...... .....++.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA-------LRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHHHhCC
Confidence 47899999999999999998643 23456666655555556677754 77899999532110 1112357788
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|.+.... .+.+..++.. +..
T Consensus 73 ~~ilv~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~--------- 98 (190)
T cd04144 73 GFILVYSITSRST-FERVERFREQ--------------------------------------------IQR--------- 98 (190)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH---------
Confidence 9888888765432 2222222211 100
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.........|.++|.||+|+.... ....+.+ ...++.+||+++.|++++.+.+.+.+.
T Consensus 99 ---------~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 99 ---------VKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred ---------HhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 000001136999999999985321 2222221 134799999999999999988877653
No 500
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.37 E-value=2.9e-12 Score=112.60 Aligned_cols=151 Identities=18% Similarity=0.187 Sum_probs=95.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
+|+++|.+|||||||++.++... .+.+++.|+.+...-.+.+++.. +.++||||...... .....++.+|
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d 74 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-------MRDLYMKNGQ 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh-------HHHHHHhhCC
Confidence 79999999999999999987542 34567777766655667777654 56899998632111 1111346678
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
.+++++|...... .+.+.+++.. +++.
T Consensus 75 ~~ilv~d~~~~~s-~~~~~~~~~~----------------------------------------i~~~------------ 101 (164)
T cd04175 75 GFVLVYSITAQST-FNDLQDLREQ----------------------------------------ILRV------------ 101 (164)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh------------
Confidence 8888877654322 1111111111 0000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc-C-CCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR-Q-PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~-~-~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|.||+|+... .....+.+ . .+++++||+++.|++++...+.+.+
T Consensus 102 ----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 102 ----------K--DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred ----------c--CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0 0113699999999998632 22233321 1 3589999999999999999887765
Done!