Query 015822
Match_columns 399
No_of_seqs 530 out of 4884
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 03:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_A Ribosome-interacting GT 100.0 1.9E-69 6.5E-74 536.2 27.9 364 2-367 10-376 (376)
2 1wxq_A GTP-binding protein; st 100.0 4.1E-40 1.4E-44 329.7 12.3 292 64-368 2-396 (397)
3 1jal_A YCHF protein; nucleotid 100.0 8.3E-40 2.8E-44 322.3 9.0 285 63-365 3-360 (363)
4 2dby_A GTP-binding protein; GD 100.0 1.3E-38 4.3E-43 315.4 10.6 283 64-365 3-365 (368)
5 2ohf_A Protein OLA1, GTP-bindi 100.0 9.5E-39 3.3E-43 317.6 8.2 284 62-365 22-386 (396)
6 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 3.9E-37 1.3E-41 306.6 12.2 288 62-364 20-387 (392)
7 2eki_A DRG 1, developmentally- 99.9 2.7E-28 9.4E-33 190.4 5.4 86 284-372 6-92 (93)
8 3tif_A Uncharacterized ABC tra 99.9 1.6E-25 5.6E-30 208.7 13.2 175 52-249 23-222 (235)
9 3tui_C Methionine import ATP-b 99.9 4.7E-25 1.6E-29 217.0 13.7 177 52-251 46-243 (366)
10 2pcj_A ABC transporter, lipopr 99.9 8.8E-25 3E-29 202.3 13.4 161 52-225 22-202 (224)
11 3fvq_A Fe(3+) IONS import ATP- 99.9 2.4E-24 8.2E-29 211.8 15.3 176 52-251 22-218 (359)
12 3rlf_A Maltose/maltodextrin im 99.9 2.3E-24 7.9E-29 213.3 15.1 172 52-251 21-213 (381)
13 1g6h_A High-affinity branched- 99.9 4.9E-24 1.7E-28 201.3 15.5 172 52-248 25-229 (257)
14 3gfo_A Cobalt import ATP-bindi 99.9 4.4E-24 1.5E-28 203.4 15.0 176 52-251 26-223 (275)
15 2olj_A Amino acid ABC transpor 99.9 3.1E-24 1.1E-28 203.2 12.8 175 52-250 42-237 (263)
16 1z47_A CYSA, putative ABC-tran 99.9 7.5E-24 2.6E-28 208.2 15.7 171 52-250 33-224 (355)
17 1b0u_A Histidine permease; ABC 99.9 7.9E-24 2.7E-28 200.4 12.8 176 52-250 24-231 (262)
18 1ji0_A ABC transporter; ATP bi 99.9 1.1E-23 3.7E-28 197.0 13.2 158 52-225 24-201 (240)
19 2onk_A Molybdate/tungstate ABC 99.9 2.4E-23 8.1E-28 194.7 15.4 170 52-250 17-205 (240)
20 2yyz_A Sugar ABC transporter, 99.9 1.1E-23 3.8E-28 207.4 13.8 172 52-251 21-213 (359)
21 2it1_A 362AA long hypothetical 99.9 1.2E-23 4E-28 207.5 13.7 171 52-250 21-212 (362)
22 4g1u_C Hemin import ATP-bindin 99.9 8.9E-24 3.1E-28 200.5 12.4 173 52-250 29-226 (266)
23 1g29_1 MALK, maltose transport 99.9 1.9E-23 6.5E-28 206.9 14.9 177 52-251 21-219 (372)
24 1v43_A Sugar-binding transport 99.9 1.6E-23 5.3E-28 207.3 14.0 172 52-251 29-221 (372)
25 3d31_A Sulfate/molybdate ABC t 99.9 8.1E-24 2.8E-28 207.7 11.8 171 52-251 18-207 (348)
26 1vpl_A ABC transporter, ATP-bi 99.9 2.3E-23 8E-28 196.5 14.2 172 52-250 33-224 (256)
27 1oxx_K GLCV, glucose, ABC tran 99.9 1.2E-23 4.2E-28 207.0 12.2 177 52-251 23-220 (353)
28 2ihy_A ABC transporter, ATP-bi 99.9 4.5E-23 1.5E-27 196.9 13.7 171 52-248 39-239 (279)
29 1sgw_A Putative ABC transporte 99.9 3.3E-23 1.1E-27 190.4 11.7 150 52-225 27-195 (214)
30 2qi9_C Vitamin B12 import ATP- 99.9 8.8E-23 3E-27 191.8 13.8 170 52-248 18-209 (249)
31 2yz2_A Putative ABC transporte 99.9 9.9E-23 3.4E-27 193.3 14.3 170 52-250 25-216 (266)
32 2d2e_A SUFC protein; ABC-ATPas 99.9 1E-22 3.5E-27 191.5 13.5 174 52-248 21-220 (250)
33 2ff7_A Alpha-hemolysin translo 99.9 1.5E-22 5.1E-27 190.1 13.0 170 52-250 27-221 (247)
34 2zu0_C Probable ATP-dependent 99.9 1.8E-22 6E-27 191.7 12.8 176 52-249 38-242 (267)
35 1mv5_A LMRA, multidrug resista 99.9 1.4E-22 4.8E-27 189.8 11.3 172 52-251 20-216 (243)
36 2nq2_C Hypothetical ABC transp 99.9 3.7E-22 1.3E-26 187.9 13.8 145 52-226 23-192 (253)
37 2ixe_A Antigen peptide transpo 99.9 2.6E-22 9E-27 190.9 10.8 170 52-249 37-233 (271)
38 3nh6_A ATP-binding cassette SU 99.9 1.7E-22 6E-27 195.0 9.4 171 52-251 72-267 (306)
39 2pjz_A Hypothetical protein ST 99.9 1.9E-21 6.4E-26 184.1 15.1 150 52-225 23-187 (263)
40 2ghi_A Transport protein; mult 99.8 3.3E-21 1.1E-25 182.2 12.7 168 52-249 38-230 (260)
41 3gd7_A Fusion complex of cysti 99.8 1.2E-21 4.1E-26 195.0 8.1 169 52-251 39-232 (390)
42 2cbz_A Multidrug resistance-as 99.8 1.5E-20 5.2E-25 175.3 12.6 156 52-248 23-204 (237)
43 2pze_A Cystic fibrosis transme 99.8 2.4E-20 8.2E-25 173.0 13.2 155 52-249 26-206 (229)
44 1udx_A The GTP-binding protein 99.8 3.3E-22 1.1E-26 200.7 0.4 243 52-365 149-406 (416)
45 3b5x_A Lipid A export ATP-bind 99.8 1.9E-20 6.4E-25 196.2 12.9 172 52-251 361-557 (582)
46 3b60_A Lipid A export ATP-bind 99.8 1.9E-20 6.4E-25 196.3 10.9 171 52-250 361-556 (582)
47 2qtf_A Protein HFLX, GTP-bindi 99.8 1.4E-20 4.8E-25 186.2 9.3 196 27-289 146-354 (364)
48 4a82_A Cystic fibrosis transme 99.8 3.2E-20 1.1E-24 194.4 10.7 171 52-251 359-554 (578)
49 2yl4_A ATP-binding cassette SU 99.8 4.8E-20 1.6E-24 193.6 11.5 169 52-248 362-557 (595)
50 3qf4_B Uncharacterized ABC tra 99.8 3.9E-20 1.3E-24 194.4 10.2 171 52-251 373-568 (598)
51 2bbs_A Cystic fibrosis transme 99.8 4E-20 1.4E-24 177.3 8.4 154 52-249 56-235 (290)
52 1lnz_A SPO0B-associated GTP-bi 99.8 6.8E-21 2.3E-25 186.8 2.9 161 63-289 159-330 (342)
53 3qf4_A ABC transporter, ATP-bi 99.8 7.2E-20 2.5E-24 191.9 9.0 171 52-251 361-556 (587)
54 3gee_A MNME, tRNA modification 99.8 2E-19 6.7E-24 183.7 11.7 191 62-330 233-430 (476)
55 3ozx_A RNAse L inhibitor; ATP 99.8 1.4E-19 4.7E-24 187.5 10.0 150 61-247 293-461 (538)
56 3bk7_A ABC transporter ATP-bin 99.8 2.2E-19 7.6E-24 188.3 9.9 138 61-226 381-535 (607)
57 1yqt_A RNAse L inhibitor; ATP- 99.8 1.7E-19 5.8E-24 187.0 8.6 138 61-226 311-465 (538)
58 1xzp_A Probable tRNA modificat 99.8 3.2E-19 1.1E-23 182.4 9.1 186 62-329 243-435 (482)
59 3geh_A MNME, tRNA modification 99.8 4.1E-19 1.4E-23 180.7 9.9 188 62-330 224-416 (462)
60 3iev_A GTP-binding protein ERA 99.8 2.4E-19 8.3E-24 173.4 7.4 157 63-288 11-181 (308)
61 1wf3_A GTP-binding protein; GT 99.8 1.3E-18 4.5E-23 167.8 9.7 157 64-288 9-172 (301)
62 1ega_A Protein (GTP-binding pr 99.7 1.3E-18 4.6E-23 167.7 8.7 155 63-288 9-174 (301)
63 3iby_A Ferrous iron transport 99.7 6.6E-19 2.2E-23 166.0 5.1 150 64-286 3-164 (256)
64 1mky_A Probable GTP-binding pr 99.7 2E-18 7E-23 174.8 9.0 153 64-287 3-164 (439)
65 1yqt_A RNAse L inhibitor; ATP- 99.7 2.1E-19 7.3E-24 186.3 1.8 148 61-225 46-220 (538)
66 2gj8_A MNME, tRNA modification 99.7 3.6E-19 1.2E-23 157.0 2.3 160 62-289 4-166 (172)
67 4f4c_A Multidrug resistance pr 99.7 1.5E-18 5.1E-23 196.7 7.1 180 52-260 1097-1303(1321)
68 3j16_B RLI1P; ribosome recycli 99.7 6.6E-18 2.3E-22 177.0 11.4 159 52-247 365-543 (608)
69 3i8s_A Ferrous iron transport 99.7 8.4E-19 2.9E-23 166.8 3.9 153 63-287 4-167 (274)
70 3g5u_A MCG1178, multidrug resi 99.7 8.8E-18 3E-22 190.0 12.4 172 52-251 1051-1248(1284)
71 3bk7_A ABC transporter ATP-bin 99.7 3.9E-19 1.3E-23 186.5 1.2 148 61-225 116-290 (607)
72 3g5u_A MCG1178, multidrug resi 99.7 5.9E-18 2E-22 191.4 10.4 170 52-252 408-604 (1284)
73 2wji_A Ferrous iron transport 99.7 5.5E-18 1.9E-22 147.9 7.9 152 63-287 4-163 (165)
74 2e87_A Hypothetical protein PH 99.7 6.3E-17 2.2E-21 159.5 16.2 162 62-288 167-335 (357)
75 1mky_A Probable GTP-binding pr 99.7 1.5E-17 5.1E-22 168.5 10.7 60 62-121 180-240 (439)
76 3ozx_A RNAse L inhibitor; ATP 99.7 1.5E-18 5.1E-23 179.7 2.6 148 61-225 24-199 (538)
77 3b1v_A Ferrous iron uptake tra 99.7 5.5E-18 1.9E-22 161.1 6.2 180 63-331 4-191 (272)
78 4f4c_A Multidrug resistance pr 99.7 1.9E-17 6.4E-22 187.8 11.5 177 52-259 436-639 (1321)
79 3a1s_A Iron(II) transport prot 99.7 9.3E-18 3.2E-22 158.3 7.1 182 63-331 6-195 (258)
80 3j16_B RLI1P; ribosome recycli 99.7 4.5E-18 1.5E-22 178.3 4.8 70 157-226 200-284 (608)
81 2dyk_A GTP-binding protein; GT 99.7 3.8E-17 1.3E-21 140.6 8.7 153 64-287 3-160 (161)
82 3k53_A Ferrous iron transport 99.7 2.9E-17 1E-21 155.6 7.8 185 63-332 4-195 (271)
83 3ux8_A Excinuclease ABC, A sub 99.7 1.7E-17 5.7E-22 176.6 6.7 67 161-227 184-268 (670)
84 2hjg_A GTP-binding protein ENG 99.7 3.9E-17 1.3E-21 165.2 7.0 203 63-338 176-422 (436)
85 3ux8_A Excinuclease ABC, A sub 99.7 8.9E-17 3.1E-21 171.0 9.8 79 157-245 521-618 (670)
86 2iw3_A Elongation factor 3A; a 99.7 6.4E-17 2.2E-21 176.1 8.2 85 156-249 877-975 (986)
87 4dhe_A Probable GTP-binding pr 99.7 3.6E-17 1.2E-21 149.2 4.8 157 62-288 29-210 (223)
88 2wjg_A FEOB, ferrous iron tran 99.6 5.7E-17 1.9E-21 143.6 5.0 153 63-288 8-168 (188)
89 2iw3_A Elongation factor 3A; a 99.6 3.8E-16 1.3E-20 170.1 11.8 142 52-226 453-608 (986)
90 2hjg_A GTP-binding protein ENG 99.6 1.1E-17 3.9E-22 169.2 -1.0 156 63-288 4-164 (436)
91 3tw8_B RAS-related protein RAB 99.6 1.8E-15 6.2E-20 132.4 12.9 151 63-287 10-169 (181)
92 2lkc_A Translation initiation 99.6 1.9E-15 6.4E-20 132.3 11.8 150 62-288 8-170 (178)
93 4dcu_A GTP-binding protein ENG 99.6 4E-16 1.4E-20 158.7 8.5 201 62-338 195-442 (456)
94 2qu8_A Putative nucleolar GTP- 99.6 5.3E-16 1.8E-20 142.7 8.0 161 63-288 30-204 (228)
95 3lxw_A GTPase IMAP family memb 99.6 9.4E-16 3.2E-20 143.5 8.6 90 62-151 21-117 (247)
96 3pqc_A Probable GTP-binding pr 99.6 1.2E-15 4.2E-20 135.3 8.2 153 63-288 24-193 (195)
97 4dcu_A GTP-binding protein ENG 99.6 8.9E-17 3E-21 163.5 -0.3 156 63-288 24-184 (456)
98 1svi_A GTP-binding protein YSX 99.6 1.1E-15 3.6E-20 136.2 6.7 153 62-287 23-193 (195)
99 3pih_A Uvrabc system protein A 99.6 8.7E-15 3E-19 159.0 15.1 80 156-245 782-880 (916)
100 3tkl_A RAS-related protein RAB 99.6 6.7E-15 2.3E-19 130.9 11.9 153 63-288 17-178 (196)
101 1m2o_B GTP-binding protein SAR 99.6 7.1E-15 2.4E-19 131.3 11.5 149 63-286 24-189 (190)
102 3qq5_A Small GTP-binding prote 99.6 2.9E-16 9.9E-21 157.9 2.4 154 63-288 35-195 (423)
103 1ksh_A ARF-like protein 2; sma 99.6 1.3E-14 4.3E-19 128.3 11.9 152 62-288 18-179 (186)
104 2h57_A ADP-ribosylation factor 99.6 3.9E-15 1.3E-19 132.4 8.3 156 62-288 21-186 (190)
105 1f6b_A SAR1; gtpases, N-termin 99.6 6.3E-15 2.1E-19 132.6 9.5 81 63-153 26-106 (198)
106 3lxx_A GTPase IMAP family memb 99.6 3.1E-15 1.1E-19 138.7 7.1 88 63-150 30-123 (239)
107 1upt_A ARL1, ADP-ribosylation 99.6 1.1E-14 3.8E-19 126.3 10.0 150 63-287 8-167 (171)
108 2h17_A ADP-ribosylation factor 99.6 8.5E-15 2.9E-19 129.3 9.3 149 62-285 21-179 (181)
109 2xtp_A GTPase IMAP family memb 99.5 5.9E-15 2E-19 138.4 8.4 90 62-151 22-117 (260)
110 1r8s_A ADP-ribosylation factor 99.5 1.2E-14 4.1E-19 125.3 9.5 149 64-287 2-160 (164)
111 4bas_A ADP-ribosylation factor 99.5 2.5E-14 8.5E-19 127.5 11.9 160 63-288 18-188 (199)
112 1z2a_A RAS-related protein RAB 99.5 1.2E-14 4E-19 125.6 9.4 151 63-287 6-165 (168)
113 1moz_A ARL1, ADP-ribosylation 99.5 8.1E-15 2.8E-19 128.9 8.5 150 63-287 19-178 (183)
114 3lvq_E ARF-GAP with SH3 domain 99.5 1.2E-14 4.1E-19 149.1 11.0 151 63-288 323-483 (497)
115 2fu5_C RAS-related protein RAB 99.5 6.4E-15 2.2E-19 129.7 7.8 152 63-287 9-169 (183)
116 2bcg_Y Protein YP2, GTP-bindin 99.5 3E-14 1E-18 128.3 12.2 152 63-287 9-169 (206)
117 1wms_A RAB-9, RAB9, RAS-relate 99.5 3.3E-14 1.1E-18 124.1 12.0 156 63-287 8-172 (177)
118 3t5g_A GTP-binding protein RHE 99.5 2.7E-14 9.1E-19 125.5 11.3 153 63-288 7-168 (181)
119 2bme_A RAB4A, RAS-related prot 99.5 1.9E-14 6.5E-19 126.9 10.4 152 63-287 11-171 (186)
120 4dsu_A GTPase KRAS, isoform 2B 99.5 1.7E-14 5.8E-19 127.2 9.9 153 63-288 5-165 (189)
121 3reg_A RHO-like small GTPase; 99.5 4.1E-14 1.4E-18 126.1 12.5 151 63-287 24-186 (194)
122 2q3h_A RAS homolog gene family 99.5 2.2E-14 7.5E-19 128.5 10.6 84 62-153 20-105 (201)
123 3q85_A GTP-binding protein REM 99.5 1.7E-14 5.9E-19 125.0 9.6 154 63-287 3-165 (169)
124 1ky3_A GTP-binding protein YPT 99.5 2.6E-14 8.9E-19 125.1 10.8 156 63-287 9-176 (182)
125 3cph_A RAS-related protein SEC 99.5 3.6E-14 1.2E-18 128.0 12.0 153 62-287 20-180 (213)
126 1g16_A RAS-related protein SEC 99.5 2.3E-14 8E-19 124.0 10.3 152 63-287 4-163 (170)
127 1fzq_A ADP-ribosylation factor 99.5 2.3E-14 7.9E-19 126.8 10.4 151 62-287 16-176 (181)
128 1zj6_A ADP-ribosylation factor 99.5 1.4E-14 4.8E-19 128.4 9.1 151 63-288 17-177 (187)
129 2b6h_A ADP-ribosylation factor 99.5 1.2E-14 4.1E-19 130.0 8.6 151 62-287 29-189 (192)
130 1vg8_A RAS-related protein RAB 99.5 3.4E-14 1.2E-18 127.6 11.6 156 63-287 9-173 (207)
131 2vf7_A UVRA2, excinuclease ABC 99.5 4.3E-15 1.5E-19 160.2 6.5 70 156-225 707-795 (842)
132 3sop_A Neuronal-specific septi 99.5 3E-15 1E-19 142.0 4.7 147 64-257 4-159 (270)
133 1z08_A RAS-related protein RAB 99.5 2.8E-14 9.6E-19 123.6 10.2 152 63-287 7-167 (170)
134 2fn4_A P23, RAS-related protei 99.5 2.1E-14 7.2E-19 125.6 9.2 152 63-287 10-170 (181)
135 1zd9_A ADP-ribosylation factor 99.5 2.9E-14 9.7E-19 126.8 10.1 152 63-288 23-184 (188)
136 2hxs_A RAB-26, RAS-related pro 99.5 1.7E-14 5.8E-19 126.1 8.5 155 63-288 7-172 (178)
137 3clv_A RAB5 protein, putative; 99.5 4.2E-14 1.4E-18 125.7 11.0 151 62-287 7-202 (208)
138 1ek0_A Protein (GTP-binding pr 99.5 2.6E-14 9E-19 123.5 9.3 152 63-287 4-167 (170)
139 2ew1_A RAS-related protein RAB 99.5 4.6E-14 1.6E-18 127.5 11.3 152 63-287 27-187 (201)
140 2g6b_A RAS-related protein RAB 99.5 5.7E-14 1.9E-18 123.0 11.5 153 63-288 11-173 (180)
141 2x77_A ADP-ribosylation factor 99.5 1.8E-14 6.1E-19 127.8 8.1 151 62-287 22-182 (189)
142 2y8e_A RAB-protein 6, GH09086P 99.5 2.2E-14 7.6E-19 125.1 8.5 152 63-287 15-175 (179)
143 1u8z_A RAS-related protein RAL 99.5 2.1E-14 7.2E-19 123.6 8.1 152 63-287 5-165 (168)
144 2il1_A RAB12; G-protein, GDP, 99.5 3.4E-14 1.1E-18 126.9 9.5 152 63-287 27-188 (192)
145 2atx_A Small GTP binding prote 99.5 7.4E-14 2.5E-18 124.3 11.7 151 63-287 19-191 (194)
146 1z0j_A RAB-22, RAS-related pro 99.5 7.7E-14 2.6E-18 120.6 11.3 150 63-287 7-167 (170)
147 3l0i_B RAS-related protein RAB 99.5 3E-15 1E-19 134.4 2.4 152 63-287 34-194 (199)
148 2efe_B Small GTP-binding prote 99.5 7.1E-14 2.4E-18 122.5 11.2 153 63-288 13-174 (181)
149 3q72_A GTP-binding protein RAD 99.5 9E-14 3.1E-18 120.1 11.5 150 63-287 3-162 (166)
150 2a5j_A RAS-related protein RAB 99.5 3.8E-14 1.3E-18 126.1 9.4 152 63-287 22-182 (191)
151 1mh1_A RAC1; GTP-binding, GTPa 99.5 5E-14 1.7E-18 123.8 10.0 151 63-287 6-178 (186)
152 2o52_A RAS-related protein RAB 99.5 3.5E-14 1.2E-18 127.7 9.0 152 63-287 26-186 (200)
153 4gzl_A RAS-related C3 botulinu 99.5 3.4E-14 1.2E-18 128.3 9.0 84 62-153 30-115 (204)
154 3cbq_A GTP-binding protein REM 99.5 3.3E-14 1.1E-18 127.6 8.8 154 63-287 24-186 (195)
155 2bov_A RAla, RAS-related prote 99.5 3.7E-14 1.3E-18 127.1 8.9 152 63-287 15-175 (206)
156 3cpj_B GTP-binding protein YPT 99.5 8.2E-14 2.8E-18 127.4 11.3 153 63-288 14-175 (223)
157 3bc1_A RAS-related protein RAB 99.5 6.1E-14 2.1E-18 123.9 10.1 153 63-287 12-183 (195)
158 2gf9_A RAS-related protein RAB 99.5 8.2E-14 2.8E-18 123.6 11.0 152 63-287 23-183 (189)
159 1c1y_A RAS-related protein RAP 99.5 4.4E-14 1.5E-18 121.9 8.8 152 63-287 4-165 (167)
160 2a9k_A RAS-related protein RAL 99.5 5.6E-14 1.9E-18 123.4 9.5 152 63-287 19-179 (187)
161 1kao_A RAP2A; GTP-binding prot 99.5 2.8E-14 9.7E-19 122.7 7.4 152 63-287 4-164 (167)
162 1x3s_A RAS-related protein RAB 99.5 9.7E-14 3.3E-18 123.1 11.1 153 63-287 16-176 (195)
163 2nzj_A GTP-binding protein REM 99.5 5.6E-14 1.9E-18 122.3 9.3 153 63-287 5-167 (175)
164 2www_A Methylmalonic aciduria 99.5 6.7E-15 2.3E-19 144.7 3.7 50 239-288 213-278 (349)
165 2f7s_A C25KG, RAS-related prot 99.5 4.1E-14 1.4E-18 128.4 8.6 153 63-287 26-197 (217)
166 1wb1_A Translation elongation 99.5 5.6E-14 1.9E-18 143.8 10.2 149 63-288 20-188 (482)
167 1r2q_A RAS-related protein RAB 99.5 9.2E-14 3.1E-18 120.0 10.1 152 63-287 7-167 (170)
168 2fg5_A RAB-22B, RAS-related pr 99.5 5.8E-14 2E-18 125.2 9.1 152 63-287 24-184 (192)
169 1zbd_A Rabphilin-3A; G protein 99.5 1.6E-13 5.3E-18 123.1 11.7 152 63-287 9-169 (203)
170 2hup_A RAS-related protein RAB 99.5 6.8E-14 2.3E-18 126.0 9.3 152 63-287 30-191 (201)
171 2j1l_A RHO-related GTP-binding 99.5 7.9E-14 2.7E-18 126.8 9.8 151 63-287 35-207 (214)
172 2fv8_A H6, RHO-related GTP-bin 99.5 7.5E-14 2.6E-18 126.1 9.5 82 63-152 26-109 (207)
173 3con_A GTPase NRAS; structural 99.5 2.8E-13 9.6E-18 120.0 12.9 152 63-287 22-181 (190)
174 2r6f_A Excinuclease ABC subuni 99.5 4.5E-14 1.5E-18 152.9 9.0 78 158-245 824-920 (972)
175 4aby_A DNA repair protein RECN 99.5 3E-14 1E-18 142.5 7.0 61 177-247 296-370 (415)
176 3bwd_D RAC-like GTP-binding pr 99.5 3.5E-14 1.2E-18 124.6 6.2 152 62-287 8-179 (182)
177 1z0f_A RAB14, member RAS oncog 99.5 1.6E-13 5.6E-18 119.6 10.5 151 63-287 16-176 (179)
178 2oil_A CATX-8, RAS-related pro 99.5 1.5E-13 5E-18 122.3 10.3 152 63-287 26-186 (193)
179 2gco_A H9, RHO-related GTP-bin 99.5 2.2E-13 7.6E-18 122.4 11.4 82 63-152 26-109 (201)
180 2cxx_A Probable GTP-binding pr 99.5 3E-14 1E-18 125.8 5.5 53 64-120 3-55 (190)
181 3t1o_A Gliding protein MGLA; G 99.5 4.7E-14 1.6E-18 125.1 6.6 155 63-287 15-190 (198)
182 3o47_A ADP-ribosylation factor 99.5 8.9E-14 3E-18 135.5 9.0 152 62-288 165-326 (329)
183 2npi_A Protein CLP1; CLP1-PCF1 99.5 4.7E-16 1.6E-20 158.1 -7.8 142 53-224 131-299 (460)
184 2ce2_X GTPase HRAS; signaling 99.5 2.4E-13 8.3E-18 116.5 10.5 152 63-287 4-163 (166)
185 3b85_A Phosphate starvation-in 99.5 6.6E-15 2.3E-19 134.3 0.6 131 62-227 22-162 (208)
186 2iwr_A Centaurin gamma 1; ANK 99.5 1.7E-13 5.8E-18 120.0 9.4 148 63-287 8-167 (178)
187 3oes_A GTPase rhebl1; small GT 99.5 1.4E-13 4.9E-18 123.5 9.1 153 63-288 25-186 (201)
188 1z06_A RAS-related protein RAB 99.5 2E-13 6.7E-18 121.2 9.8 154 63-287 21-186 (189)
189 2ygr_A Uvrabc system protein A 99.5 9.4E-14 3.2E-18 150.9 9.2 68 158-225 842-928 (993)
190 2j0v_A RAC-like GTP-binding pr 99.4 1.4E-13 4.8E-18 124.4 8.8 151 63-287 10-178 (212)
191 1pui_A ENGB, probable GTP-bind 99.4 7.3E-14 2.5E-18 125.9 6.5 56 62-120 26-83 (210)
192 2yc2_C IFT27, small RAB-relate 99.4 6.8E-14 2.3E-18 125.4 5.6 155 63-287 21-190 (208)
193 3dz8_A RAS-related protein RAB 99.4 1.4E-13 4.9E-18 122.4 7.5 152 63-287 24-184 (191)
194 2p5s_A RAS and EF-hand domain 99.4 1.6E-13 5.4E-18 123.0 7.7 153 62-287 28-195 (199)
195 3c5c_A RAS-like protein 12; GD 99.4 4.3E-13 1.5E-17 119.2 10.3 153 63-287 22-184 (187)
196 3kkq_A RAS-related protein M-R 99.4 5.4E-13 1.9E-17 117.3 10.8 152 63-287 19-180 (183)
197 3ihw_A Centg3; RAS, centaurin, 99.4 4.6E-13 1.6E-17 118.9 10.4 146 63-287 21-178 (184)
198 2f9l_A RAB11B, member RAS onco 99.4 3.7E-13 1.3E-17 120.7 9.8 152 63-287 6-166 (199)
199 2g3y_A GTP-binding protein GEM 99.4 6.8E-13 2.3E-17 121.2 11.7 154 63-287 38-201 (211)
200 3r7w_A Gtpase1, GTP-binding pr 99.4 3.2E-13 1.1E-17 130.2 9.9 89 63-153 4-94 (307)
201 2j69_A Bacterial dynamin-like 99.4 1.5E-13 5.2E-18 146.4 8.3 34 62-95 69-103 (695)
202 4gp7_A Metallophosphoesterase; 99.4 1.3E-14 4.4E-19 128.1 -0.1 56 172-227 79-163 (171)
203 1m7b_A RND3/RHOE small GTP-bin 99.4 4.8E-13 1.6E-17 118.3 10.0 83 63-153 8-92 (184)
204 1oix_A RAS-related protein RAB 99.4 3.7E-13 1.3E-17 120.2 9.3 152 63-287 30-190 (191)
205 3gj0_A GTP-binding nuclear pro 99.4 2.9E-14 9.9E-19 130.0 2.0 151 63-287 16-173 (221)
206 2aka_B Dynamin-1; fusion prote 99.4 1.6E-14 5.4E-19 137.9 -0.1 49 238-286 192-250 (299)
207 2atv_A RERG, RAS-like estrogen 99.4 3.6E-13 1.2E-17 120.3 8.8 152 62-287 28-189 (196)
208 3q3j_B RHO-related GTP-binding 99.4 7.2E-13 2.5E-17 120.6 10.7 152 62-287 27-201 (214)
209 3izq_1 HBS1P, elongation facto 99.4 1.1E-13 3.6E-18 145.5 5.8 83 62-151 167-280 (611)
210 2fh5_B SR-beta, signal recogni 99.4 3.7E-13 1.3E-17 121.8 8.6 80 63-151 8-90 (214)
211 2cjw_A GTP-binding protein GEM 99.4 1E-12 3.5E-17 117.6 11.3 154 63-287 7-170 (192)
212 3th5_A RAS-related C3 botulinu 99.1 2.1E-14 7.2E-19 129.2 0.0 83 62-152 30-114 (204)
213 4djt_A GTP-binding nuclear pro 99.4 3.4E-13 1.2E-17 122.4 8.0 152 63-288 12-174 (218)
214 3sjy_A Translation initiation 99.4 3.4E-13 1.2E-17 134.9 8.5 151 63-288 9-191 (403)
215 1gwn_A RHO-related GTP-binding 99.4 6.9E-13 2.4E-17 120.1 9.7 83 63-153 29-113 (205)
216 2zej_A Dardarin, leucine-rich 99.4 2.3E-13 7.9E-18 120.5 6.1 153 63-288 3-177 (184)
217 2erx_A GTP-binding protein DI- 99.4 2.8E-13 9.5E-18 117.2 6.4 154 63-288 4-166 (172)
218 2qnr_A Septin-2, protein NEDD5 99.4 3.4E-13 1.2E-17 129.8 7.5 167 64-287 20-212 (301)
219 1tq4_A IIGP1, interferon-induc 99.4 2.8E-14 9.4E-19 142.9 -0.6 138 64-234 71-249 (413)
220 2qm8_A GTPase/ATPase; G protei 99.4 4.6E-14 1.6E-18 138.0 1.0 83 239-334 194-293 (337)
221 2wkq_A NPH1-1, RAS-related C3 99.4 7.9E-13 2.7E-17 127.4 9.5 83 63-153 156-240 (332)
222 3t5d_A Septin-7; GTP-binding p 99.4 2.3E-13 7.8E-18 129.0 5.0 58 63-120 9-76 (274)
223 3j2k_7 ERF3, eukaryotic polype 99.4 4.7E-13 1.6E-17 135.4 7.5 83 63-152 18-131 (439)
224 3p26_A Elongation factor 1 alp 99.4 3.3E-13 1.1E-17 138.1 5.2 83 63-152 34-147 (483)
225 2gf0_A GTP-binding protein DI- 99.3 2E-12 6.7E-17 115.1 9.1 156 62-289 8-171 (199)
226 1jwy_B Dynamin A GTPase domain 99.3 2.2E-13 7.4E-18 131.1 2.6 51 238-288 198-261 (315)
227 3mca_A HBS1, elongation factor 99.3 1.6E-13 5.5E-18 143.7 1.1 82 63-151 178-290 (592)
228 3izy_P Translation initiation 99.3 1.6E-13 5.3E-18 141.6 1.0 150 63-289 5-168 (537)
229 1e69_A Chromosome segregation 99.3 3.6E-12 1.2E-16 123.7 10.1 61 170-230 213-289 (322)
230 1kk1_A EIF2gamma; initiation o 99.3 3.5E-12 1.2E-16 127.8 10.2 151 63-288 11-199 (410)
231 3tr5_A RF-3, peptide chain rel 99.3 6.7E-13 2.3E-17 137.1 5.0 83 63-152 14-118 (528)
232 3def_A T7I23.11 protein; chlor 99.3 2.3E-12 7.7E-17 121.3 7.7 59 63-121 37-96 (262)
233 3dpu_A RAB family protein; roc 99.3 6E-13 2.1E-17 137.8 4.1 149 63-288 42-207 (535)
234 1s0u_A EIF-2-gamma, translatio 99.3 8.5E-12 2.9E-16 125.0 10.9 152 62-288 8-197 (408)
235 2p67_A LAO/AO transport system 99.3 9.3E-13 3.2E-17 128.9 3.8 49 239-287 195-259 (341)
236 3qf7_A RAD50; ABC-ATPase, ATPa 99.3 1.4E-11 4.7E-16 121.7 12.2 56 170-225 273-347 (365)
237 2elf_A Protein translation elo 99.3 1.6E-12 5.6E-17 128.6 5.3 70 64-148 23-92 (370)
238 1h65_A Chloroplast outer envel 99.3 8.7E-12 3E-16 117.7 9.7 59 63-121 40-99 (270)
239 3llu_A RAS-related GTP-binding 99.3 9.5E-12 3.3E-16 111.2 8.9 84 62-152 20-108 (196)
240 2c78_A Elongation factor TU-A; 99.3 4.5E-12 1.6E-16 126.8 6.7 83 63-152 12-111 (405)
241 4dkx_A RAS-related protein RAB 99.2 2.8E-11 9.6E-16 110.8 9.3 152 63-288 14-175 (216)
242 2x2e_A Dynamin-1; nitration, h 99.2 2.8E-12 9.6E-17 126.0 2.4 48 238-285 197-254 (353)
243 3p32_A Probable GTPase RV1496/ 99.2 1.8E-12 6.1E-17 127.6 0.8 50 239-288 218-283 (355)
244 1zun_B Sulfate adenylate trans 99.2 1.5E-11 5E-16 124.2 7.0 83 63-152 25-140 (434)
245 1zo1_I IF2, translation initia 99.2 1.4E-12 4.7E-17 133.5 -1.0 82 63-151 5-86 (501)
246 2qag_C Septin-7; cell cycle, c 99.2 6.8E-11 2.3E-15 118.5 10.8 78 185-288 139-226 (418)
247 3c5h_A Glucocorticoid receptor 99.2 5.1E-11 1.8E-15 111.6 9.3 50 238-287 198-253 (255)
248 3zvr_A Dynamin-1; hydrolase, D 99.2 3.7E-12 1.3E-16 135.7 1.2 48 238-285 217-274 (772)
249 1f60_A Elongation factor EEF1A 99.2 9.9E-12 3.4E-16 126.3 4.2 83 63-152 8-121 (458)
250 1jny_A EF-1-alpha, elongation 99.2 1.5E-11 5.2E-16 124.2 5.2 82 63-151 7-119 (435)
251 1d2e_A Elongation factor TU (E 99.2 4E-11 1.4E-15 119.7 8.2 83 63-152 4-102 (397)
252 1ye8_A Protein THEP1, hypothet 99.2 7.7E-12 2.6E-16 111.1 2.7 52 170-221 70-138 (178)
253 1z6g_A Guanylate kinase; struc 99.1 1.1E-12 3.7E-17 120.3 -3.5 128 51-201 14-161 (218)
254 2ywe_A GTP-binding protein LEP 99.1 4.8E-11 1.6E-15 124.6 8.0 149 63-288 7-183 (600)
255 2ged_A SR-beta, signal recogni 99.1 3.9E-11 1.3E-15 106.3 5.7 78 62-150 48-129 (193)
256 3t34_A Dynamin-related protein 99.1 2.1E-11 7.2E-16 120.0 3.8 25 63-87 35-59 (360)
257 3szr_A Interferon-induced GTP- 99.1 4.5E-11 1.5E-15 125.6 5.6 159 64-253 47-229 (608)
258 2qpt_A EH domain-containing pr 99.1 5.4E-11 1.8E-15 123.5 6.2 73 21-97 27-103 (550)
259 3b9q_A Chloroplast SRP recepto 99.1 3.2E-12 1.1E-16 123.0 -2.9 144 52-222 92-256 (302)
260 2xex_A Elongation factor G; GT 99.1 1.1E-10 3.9E-15 124.2 8.5 83 63-152 11-111 (693)
261 3cb4_D GTP-binding protein LEP 99.1 5.4E-11 1.9E-15 124.3 5.8 148 64-288 6-181 (599)
262 1r5b_A Eukaryotic peptide chai 99.1 4.6E-11 1.6E-15 121.7 4.0 83 63-152 44-157 (467)
263 2h5e_A Peptide chain release f 99.1 2.2E-10 7.7E-15 118.3 8.5 83 63-152 14-118 (529)
264 1dar_A EF-G, elongation factor 99.1 3.2E-10 1.1E-14 120.8 9.8 83 63-152 13-113 (691)
265 2pt7_A CAG-ALFA; ATPase, prote 99.1 3.9E-11 1.3E-15 116.9 2.5 110 54-232 165-284 (330)
266 1znw_A Guanylate kinase, GMP k 99.0 6.5E-12 2.2E-16 113.8 -3.0 31 55-87 15-45 (207)
267 1g7s_A Translation initiation 99.0 2.2E-10 7.5E-15 119.8 7.7 81 63-151 6-105 (594)
268 3qkt_A DNA double-strand break 99.0 2.2E-09 7.4E-14 104.8 14.1 57 171-227 243-318 (339)
269 2og2_A Putative signal recogni 99.0 1.1E-11 3.6E-16 122.0 -2.7 144 52-222 149-313 (359)
270 2qag_A Septin-2, protein NEDD5 99.0 8.5E-11 2.9E-15 115.9 2.7 57 64-120 39-106 (361)
271 2dy1_A Elongation factor G; tr 99.0 3.5E-10 1.2E-14 120.0 7.0 83 62-151 9-109 (665)
272 3aez_A Pantothenate kinase; tr 99.0 1.1E-10 3.9E-15 112.7 2.9 110 62-200 90-209 (312)
273 2wsm_A Hydrogenase expression/ 99.0 1.3E-10 4.6E-15 105.4 2.6 50 239-288 155-213 (221)
274 3avx_A Elongation factor TS, e 98.9 7.1E-10 2.4E-14 122.0 7.1 83 63-152 297-395 (1289)
275 2eyu_A Twitching motility prot 98.9 3.1E-09 1.1E-13 100.0 8.6 117 62-232 25-142 (261)
276 2dpy_A FLII, flagellum-specifi 98.8 6.8E-10 2.3E-14 112.0 2.6 153 55-233 152-326 (438)
277 1puj_A YLQF, conserved hypothe 98.8 1.3E-09 4.5E-14 103.7 4.4 58 62-122 120-178 (282)
278 2rdo_7 EF-G, elongation factor 98.8 5.7E-09 2E-13 111.3 9.6 83 63-152 11-118 (704)
279 1nrj_B SR-beta, signal recogni 98.8 1.4E-09 4.9E-14 98.3 3.9 77 63-150 13-93 (218)
280 2obl_A ESCN; ATPase, hydrolase 98.8 8.5E-10 2.9E-14 108.1 2.4 152 52-233 64-237 (347)
281 1tf7_A KAIC; homohexamer, hexa 98.8 2.9E-11 1E-15 124.9 -8.9 144 52-225 30-187 (525)
282 1yrb_A ATP(GTP)binding protein 98.8 5.1E-09 1.8E-13 97.5 6.5 50 239-288 172-256 (262)
283 2qag_B Septin-6, protein NEDD5 98.8 1.7E-08 5.7E-13 101.1 10.4 65 52-119 32-105 (427)
284 3thx_B DNA mismatch repair pro 98.8 1.2E-08 4.2E-13 111.1 8.9 60 174-233 733-806 (918)
285 3ec1_A YQEH GTPase; atnos1, at 98.8 6.1E-10 2.1E-14 110.0 -1.3 57 63-122 163-225 (369)
286 2jeo_A Uridine-cytidine kinase 98.7 4.1E-09 1.4E-13 97.8 3.7 33 52-86 17-49 (245)
287 3thx_A DNA mismatch repair pro 98.7 1.3E-08 4.6E-13 111.1 8.1 44 189-232 745-794 (934)
288 2rcn_A Probable GTPase ENGC; Y 98.7 3.2E-09 1.1E-13 104.1 1.6 100 62-188 215-325 (358)
289 1f5n_A Interferon-induced guan 98.7 9.9E-09 3.4E-13 106.8 5.1 59 63-122 39-104 (592)
290 2ehv_A Hypothetical protein PH 98.7 4.5E-09 1.5E-13 96.8 1.9 26 57-84 27-52 (251)
291 1cr0_A DNA primase/helicase; R 98.7 1.4E-09 4.9E-14 103.6 -1.5 35 52-88 27-61 (296)
292 1tf7_A KAIC; homohexamer, hexa 98.6 8.6E-09 2.9E-13 106.4 3.4 119 56-223 277-417 (525)
293 2v9p_A Replication protein E1; 98.6 1.8E-09 6.1E-14 103.7 -1.7 33 52-86 118-150 (305)
294 2i3b_A HCR-ntpase, human cance 98.6 4.2E-09 1.4E-13 94.3 0.7 25 62-86 1-25 (189)
295 1n0u_A EF-2, elongation factor 98.6 1.2E-08 4E-13 111.0 3.3 82 64-152 21-134 (842)
296 3vqt_A RF-3, peptide chain rel 98.6 7E-08 2.4E-12 100.0 8.9 98 64-168 33-153 (548)
297 2ewv_A Twitching motility prot 98.5 8.5E-08 2.9E-12 94.7 7.3 118 62-233 136-254 (372)
298 2o5v_A DNA replication and rep 98.5 2.6E-07 8.8E-12 90.7 10.5 51 172-222 260-330 (359)
299 3hvz_A Uncharacterized protein 98.5 1.7E-07 5.9E-12 71.3 7.1 56 305-370 16-71 (78)
300 3h2y_A GTPase family protein; 98.5 1.2E-08 4.1E-13 100.7 0.8 56 63-121 161-223 (368)
301 2vf7_A UVRA2, excinuclease ABC 98.5 1.1E-08 3.8E-13 110.4 0.3 147 71-228 271-446 (842)
302 1f2t_B RAD50 ABC-ATPase; DNA d 98.5 7.8E-08 2.7E-12 82.6 5.5 69 170-248 51-138 (148)
303 1wb9_A DNA mismatch repair pro 98.5 5.9E-08 2E-12 104.6 5.5 44 189-232 690-739 (800)
304 1nlf_A Regulatory protein REPA 98.5 2.8E-08 9.7E-13 93.9 2.7 66 159-224 99-182 (279)
305 2yv5_A YJEQ protein; hydrolase 98.5 2.6E-08 8.7E-13 95.7 2.4 120 62-188 165-299 (302)
306 3j25_A Tetracycline resistance 98.5 2.9E-08 1E-12 104.8 3.0 98 64-168 4-120 (638)
307 3cnl_A YLQF, putative uncharac 98.5 5.3E-08 1.8E-12 91.6 3.6 55 64-121 101-156 (262)
308 1ewq_A DNA mismatch repair pro 98.5 1.7E-08 6E-13 108.1 0.2 40 189-228 659-703 (765)
309 3jvv_A Twitching mobility prot 98.5 1.3E-07 4.4E-12 92.9 6.3 42 189-233 200-241 (356)
310 3asz_A Uridine kinase; cytidin 98.5 2.4E-08 8.2E-13 90.0 0.6 25 62-86 6-30 (211)
311 2hf9_A Probable hydrogenase ni 98.5 6.6E-08 2.3E-12 87.8 3.4 49 239-287 165-222 (226)
312 1htw_A HI0065; nucleotide-bind 98.4 1.3E-08 4.3E-13 88.6 -1.5 45 53-111 26-70 (158)
313 2o8b_B DNA mismatch repair pro 98.4 3.7E-08 1.3E-12 108.7 1.8 39 189-227 872-916 (1022)
314 1u0l_A Probable GTPase ENGC; p 98.4 4.6E-08 1.6E-12 93.7 1.7 27 62-88 169-195 (301)
315 4a74_A DNA repair and recombin 98.4 5.9E-08 2E-12 88.1 1.9 28 57-86 22-49 (231)
316 3r7w_B Gtpase2, GTP-binding pr 98.4 1.3E-07 4.4E-12 91.5 4.1 84 64-152 1-85 (331)
317 2f1r_A Molybdopterin-guanine d 98.4 1E-08 3.6E-13 90.3 -3.9 46 63-116 3-48 (171)
318 3ney_A 55 kDa erythrocyte memb 98.4 6.2E-08 2.1E-12 87.2 1.1 57 62-120 19-77 (197)
319 2j37_W Signal recognition part 98.4 1.6E-07 5.6E-12 96.0 4.2 22 62-83 101-122 (504)
320 1nij_A Hypothetical protein YJ 98.4 2.4E-08 8.2E-13 96.5 -2.1 49 63-114 5-53 (318)
321 3pih_A Uvrabc system protein A 98.3 1.8E-07 6E-12 101.9 3.8 69 158-226 443-529 (916)
322 2r6f_A Excinuclease ABC subuni 98.3 1.9E-07 6.4E-12 101.5 3.9 67 161-227 486-570 (972)
323 2ygr_A Uvrabc system protein A 98.3 2.6E-07 9E-12 100.6 4.7 66 161-226 503-586 (993)
324 3lnc_A Guanylate kinase, GMP k 98.3 1.2E-07 4E-12 86.9 0.9 52 50-103 17-70 (231)
325 1pzn_A RAD51, DNA repair and r 98.2 2.9E-07 9.8E-12 90.1 2.0 30 55-86 126-155 (349)
326 2bbw_A Adenylate kinase 4, AK4 98.2 5.1E-08 1.7E-12 90.3 -3.5 27 62-88 27-56 (246)
327 1kgd_A CASK, peripheral plasma 98.2 3.7E-07 1.3E-11 80.5 1.6 52 62-115 5-58 (180)
328 3a00_A Guanylate kinase, GMP k 98.2 2.9E-07 9.8E-12 81.6 0.6 48 63-112 2-51 (186)
329 1lvg_A Guanylate kinase, GMP k 98.1 2.8E-07 9.5E-12 82.7 -0.2 52 62-115 4-57 (198)
330 1p9r_A General secretion pathw 98.1 2.6E-07 8.9E-12 92.5 -0.4 40 62-112 167-206 (418)
331 1t9h_A YLOQ, probable GTPase E 98.1 4.3E-07 1.5E-11 87.3 0.9 56 62-121 173-236 (307)
332 1lw7_A Transcriptional regulat 98.1 7.4E-08 2.5E-12 94.7 -4.6 36 53-88 161-196 (365)
333 1s96_A Guanylate kinase, GMP k 98.1 9.9E-07 3.4E-11 80.6 2.4 26 62-87 16-41 (219)
334 2v3c_C SRP54, signal recogniti 98.1 3.8E-08 1.3E-12 99.1 -8.2 23 63-85 100-122 (432)
335 3euj_A Chromosome partition pr 98.1 3.3E-07 1.1E-11 93.2 -1.4 46 52-111 22-67 (483)
336 2w0m_A SSO2452; RECA, SSPF, un 98.0 1.2E-06 3.9E-11 79.3 2.0 26 62-87 23-48 (235)
337 3q5d_A Atlastin-1; G protein, 98.0 2.1E-06 7.3E-11 86.4 4.0 59 63-121 68-152 (447)
338 3kta_B Chromosome segregation 98.0 1.4E-06 4.9E-11 76.6 2.3 54 171-224 59-128 (173)
339 1vma_A Cell division protein F 98.0 2.1E-05 7.3E-10 75.4 10.1 28 61-88 103-130 (306)
340 2gza_A Type IV secretion syste 98.0 9.3E-07 3.2E-11 86.8 0.2 45 52-109 167-211 (361)
341 1zp6_A Hypothetical protein AT 98.0 5.8E-06 2E-10 72.8 5.0 37 62-111 9-45 (191)
342 3e70_C DPA, signal recognition 98.0 3E-06 1E-10 82.1 3.3 40 61-111 128-167 (328)
343 2yhs_A FTSY, cell division pro 98.0 3.4E-06 1.2E-10 85.7 3.8 46 52-110 285-330 (503)
344 3tr0_A Guanylate kinase, GMP k 97.9 2.9E-06 9.8E-11 75.6 2.6 25 62-86 7-31 (205)
345 2cvh_A DNA repair and recombin 97.9 1.4E-05 4.9E-10 71.6 6.3 23 62-84 20-42 (220)
346 4fn5_A EF-G 1, elongation fact 97.9 1E-05 3.5E-10 86.4 5.9 98 64-168 15-138 (709)
347 1ls1_A Signal recognition part 97.9 2.1E-05 7.3E-10 74.9 7.5 33 52-88 92-124 (295)
348 1in4_A RUVB, holliday junction 97.9 1.3E-06 4.3E-11 84.8 -1.2 133 63-211 52-193 (334)
349 3c8u_A Fructokinase; YP_612366 97.8 3.1E-06 1.1E-10 76.1 1.0 41 62-110 22-62 (208)
350 3dm5_A SRP54, signal recogniti 97.8 2.1E-05 7.1E-10 79.0 6.4 23 62-84 100-122 (443)
351 1rj9_A FTSY, signal recognitio 97.8 4.3E-06 1.5E-10 80.1 1.3 40 61-111 101-140 (304)
352 3tau_A Guanylate kinase, GMP k 97.8 8.4E-06 2.9E-10 73.4 3.1 52 62-115 8-61 (208)
353 1odf_A YGR205W, hypothetical 3 97.8 1.5E-05 5.1E-10 75.8 4.6 26 62-87 31-56 (290)
354 1sxj_E Activator 1 40 kDa subu 97.7 3.6E-05 1.2E-09 74.4 6.8 35 189-224 138-175 (354)
355 4ad8_A DNA repair protein RECN 97.7 1.6E-05 5.6E-10 81.6 4.3 66 173-248 393-473 (517)
356 1sq5_A Pantothenate kinase; P- 97.6 1.4E-05 4.8E-10 76.5 2.1 34 62-106 80-115 (308)
357 2oap_1 GSPE-2, type II secreti 97.6 3E-05 1E-09 79.5 3.5 38 62-110 260-297 (511)
358 2bdt_A BH3686; alpha-beta prot 97.6 2.1E-05 7.3E-10 69.2 1.9 23 62-84 2-24 (189)
359 1qhl_A Protein (cell division 97.5 2.6E-06 8.7E-11 78.3 -4.4 38 63-111 28-65 (227)
360 2j41_A Guanylate kinase; GMP, 97.5 3.4E-05 1.2E-09 68.5 3.0 26 62-87 6-31 (207)
361 1ex7_A Guanylate kinase; subst 97.5 2.5E-05 8.5E-10 69.4 1.0 51 64-116 3-55 (186)
362 3auy_A DNA double-strand break 97.5 9.4E-05 3.2E-09 72.6 5.2 67 172-248 276-361 (371)
363 4eun_A Thermoresistant glucoki 97.4 6.8E-05 2.3E-09 66.8 2.9 24 62-85 29-52 (200)
364 3vaa_A Shikimate kinase, SK; s 97.4 8.3E-05 2.8E-09 66.2 3.4 33 51-85 16-48 (199)
365 4e22_A Cytidylate kinase; P-lo 97.4 2.2E-05 7.5E-10 72.9 -0.5 33 62-105 27-62 (252)
366 3kta_A Chromosome segregation 97.3 0.00012 4.2E-09 63.8 4.0 32 52-86 19-50 (182)
367 3kl4_A SRP54, signal recogniti 97.3 0.0019 6.4E-08 64.7 13.1 25 62-86 97-121 (433)
368 2qor_A Guanylate kinase; phosp 97.3 7E-05 2.4E-09 66.9 1.6 43 62-104 12-56 (204)
369 1kag_A SKI, shikimate kinase I 97.3 9.9E-05 3.4E-09 63.6 2.5 25 62-86 4-28 (173)
370 2x8a_A Nuclear valosin-contain 97.3 4.5E-05 1.6E-09 71.8 0.2 34 65-111 47-80 (274)
371 3uie_A Adenylyl-sulfate kinase 97.2 0.00014 4.7E-09 64.8 3.0 25 62-86 25-49 (200)
372 1knq_A Gluconate kinase; ALFA/ 97.2 0.00015 5.3E-09 62.7 2.9 24 62-85 8-31 (175)
373 1w1w_A Structural maintenance 97.2 0.00029 1E-08 70.4 5.0 51 174-224 331-398 (430)
374 2vp4_A Deoxynucleoside kinase; 97.1 0.00018 6.1E-09 65.6 2.3 24 62-85 20-43 (230)
375 3ec2_A DNA replication protein 97.1 0.0002 6.9E-09 62.4 2.4 25 62-86 38-62 (180)
376 1rz3_A Hypothetical protein rb 97.1 0.00047 1.6E-08 61.4 4.8 25 62-86 22-46 (201)
377 2kjq_A DNAA-related protein; s 97.0 0.0002 6.8E-09 61.0 2.0 25 62-86 36-60 (149)
378 1zu4_A FTSY; GTPase, signal re 97.0 0.00022 7.4E-09 68.7 1.7 35 52-88 97-131 (320)
379 2ius_A DNA translocase FTSK; n 96.9 9.8E-05 3.3E-09 75.5 -0.9 30 53-84 160-189 (512)
380 1cke_A CK, MSSA, protein (cyti 96.9 0.00038 1.3E-08 62.7 2.9 23 63-85 6-28 (227)
381 2qt1_A Nicotinamide riboside k 96.9 0.00055 1.9E-08 60.9 3.6 25 62-86 21-45 (207)
382 1jjv_A Dephospho-COA kinase; P 96.9 0.00051 1.7E-08 61.0 3.4 22 64-85 4-25 (206)
383 2if2_A Dephospho-COA kinase; a 96.8 0.00052 1.8E-08 60.8 2.6 21 64-84 3-23 (204)
384 1puj_A YLQF, conserved hypothe 96.7 0.00024 8.1E-09 67.2 0.1 50 238-287 50-104 (282)
385 2yv5_A YJEQ protein; hydrolase 96.7 0.00045 1.5E-08 65.9 2.0 46 239-284 111-164 (302)
386 1ixz_A ATP-dependent metallopr 96.7 0.00029 9.9E-09 64.9 0.7 22 65-86 52-73 (254)
387 1n0w_A DNA repair protein RAD5 96.7 0.00065 2.2E-08 61.6 2.9 24 62-85 24-47 (243)
388 1svm_A Large T antigen; AAA+ f 96.7 0.00024 8.1E-09 70.0 -0.1 30 54-85 163-192 (377)
389 3tqc_A Pantothenate kinase; bi 96.7 0.0006 2.1E-08 65.6 2.7 25 63-87 93-117 (321)
390 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00099 3.4E-08 56.6 3.5 21 63-83 24-44 (149)
391 1y63_A LMAJ004144AAA protein; 96.7 0.00062 2.1E-08 59.6 2.3 24 62-85 10-33 (184)
392 1iy2_A ATP-dependent metallopr 96.6 0.00039 1.3E-08 65.1 0.8 22 65-86 76-97 (278)
393 2pez_A Bifunctional 3'-phospho 96.6 0.00097 3.3E-08 57.9 3.0 25 62-86 5-29 (179)
394 4eaq_A DTMP kinase, thymidylat 96.5 0.00075 2.6E-08 61.6 1.5 25 62-86 26-50 (229)
395 3cm0_A Adenylate kinase; ATP-b 96.5 0.0014 4.6E-08 57.0 3.1 23 62-84 4-26 (186)
396 3kb2_A SPBC2 prophage-derived 96.4 0.0015 5.2E-08 55.7 3.2 22 64-85 3-24 (173)
397 1w1w_A Structural maintenance 96.4 0.0013 4.5E-08 65.6 3.2 27 62-88 26-52 (430)
398 3cr8_A Sulfate adenylyltranfer 96.4 0.00071 2.4E-08 69.9 1.2 27 62-88 369-395 (552)
399 1cip_A Protein (guanine nucleo 96.4 0.0039 1.3E-07 60.8 6.4 45 100-151 184-228 (353)
400 3nwj_A ATSK2; P loop, shikimat 96.4 0.0011 3.9E-08 61.4 2.4 24 62-85 48-71 (250)
401 1u0l_A Probable GTPase ENGC; p 96.4 0.0013 4.4E-08 62.6 2.8 46 239-284 116-168 (301)
402 3lw7_A Adenylate kinase relate 96.4 0.0017 5.9E-08 55.1 3.2 20 63-82 2-21 (179)
403 1np6_A Molybdopterin-guanine d 96.4 0.0015 5.1E-08 57.2 2.8 24 63-86 7-30 (174)
404 3t61_A Gluconokinase; PSI-biol 96.4 0.0015 5.1E-08 57.8 2.8 23 63-85 19-41 (202)
405 1kht_A Adenylate kinase; phosp 96.3 0.0023 7.9E-08 55.5 3.5 24 62-85 3-26 (192)
406 2yvu_A Probable adenylyl-sulfa 96.3 0.0025 8.6E-08 55.5 3.6 25 62-86 13-37 (186)
407 1qhx_A CPT, protein (chloramph 96.2 0.0026 9E-08 54.7 3.5 24 63-86 4-27 (178)
408 1ly1_A Polynucleotide kinase; 96.2 0.0027 9.1E-08 54.6 3.3 22 63-84 3-24 (181)
409 2jaq_A Deoxyguanosine kinase; 96.2 0.0026 9E-08 55.8 3.3 22 64-85 2-23 (205)
410 3qks_A DNA double-strand break 96.2 0.0026 9E-08 56.8 3.3 21 63-83 24-44 (203)
411 2px0_A Flagellar biosynthesis 96.2 0.002 6.8E-08 61.3 2.6 26 62-87 105-130 (296)
412 1zcb_A G alpha I/13; GTP-bindi 96.1 0.0057 2E-07 59.7 5.5 43 102-151 194-236 (362)
413 3lda_A DNA repair protein RAD5 96.1 0.004 1.4E-07 61.7 4.3 25 62-86 178-204 (400)
414 2rhm_A Putative kinase; P-loop 96.1 0.0033 1.1E-07 54.7 3.4 23 62-84 5-27 (193)
415 2plr_A DTMP kinase, probable t 96.0 0.0037 1.3E-07 55.2 3.6 24 62-85 4-27 (213)
416 2v54_A DTMP kinase, thymidylat 96.0 0.0037 1.3E-07 55.0 3.5 25 62-86 4-28 (204)
417 1nks_A Adenylate kinase; therm 96.0 0.0035 1.2E-07 54.4 3.1 22 64-85 3-24 (194)
418 1m7g_A Adenylylsulfate kinase; 95.9 0.0042 1.4E-07 55.4 3.5 25 62-86 25-49 (211)
419 1via_A Shikimate kinase; struc 95.9 0.0035 1.2E-07 54.0 2.9 22 64-85 6-27 (175)
420 1tev_A UMP-CMP kinase; ploop, 95.9 0.0047 1.6E-07 53.6 3.6 23 62-84 3-25 (196)
421 3trf_A Shikimate kinase, SK; a 95.9 0.0047 1.6E-07 53.5 3.4 23 63-85 6-28 (185)
422 2kmm_A Guanosine-3',5'-BIS(dip 95.9 0.014 4.6E-07 42.9 5.5 54 306-369 12-65 (73)
423 1vht_A Dephospho-COA kinase; s 95.8 0.005 1.7E-07 55.0 3.6 23 62-84 4-26 (218)
424 2wwf_A Thymidilate kinase, put 95.8 0.0045 1.5E-07 54.8 3.2 24 62-85 10-33 (212)
425 2c95_A Adenylate kinase 1; tra 95.8 0.0048 1.6E-07 53.8 3.3 23 62-84 9-31 (196)
426 3iij_A Coilin-interacting nucl 95.8 0.0046 1.6E-07 53.4 3.0 23 62-84 11-33 (180)
427 3fb4_A Adenylate kinase; psych 95.8 0.005 1.7E-07 54.8 3.3 21 64-84 2-22 (216)
428 1gtv_A TMK, thymidylate kinase 95.7 0.0023 7.9E-08 56.8 1.0 23 64-86 2-24 (214)
429 2bwj_A Adenylate kinase 5; pho 95.7 0.0053 1.8E-07 53.7 3.3 24 62-85 12-35 (199)
430 1q3t_A Cytidylate kinase; nucl 95.7 0.0055 1.9E-07 55.7 3.4 23 62-84 16-38 (236)
431 4fcw_A Chaperone protein CLPB; 95.7 0.019 6.3E-07 53.9 7.2 24 63-86 48-71 (311)
432 1nn5_A Similar to deoxythymidy 95.7 0.0054 1.8E-07 54.3 3.3 24 62-85 9-32 (215)
433 3dl0_A Adenylate kinase; phosp 95.7 0.0056 1.9E-07 54.6 3.3 22 64-85 2-23 (216)
434 3h2y_A GTPase family protein; 95.7 0.015 5E-07 56.9 6.5 88 200-288 56-159 (368)
435 3m6a_A ATP-dependent protease 95.7 0.0037 1.3E-07 64.4 2.2 25 62-86 108-132 (543)
436 2z0h_A DTMP kinase, thymidylat 95.6 0.006 2E-07 53.2 3.3 22 64-85 2-23 (197)
437 2cdn_A Adenylate kinase; phosp 95.6 0.0065 2.2E-07 53.5 3.5 23 62-84 20-42 (201)
438 1uf9_A TT1252 protein; P-loop, 95.6 0.0058 2E-07 53.6 3.1 23 63-85 9-31 (203)
439 2dr3_A UPF0273 protein PH0284; 95.6 0.0062 2.1E-07 55.0 3.4 23 62-84 23-45 (247)
440 3ec1_A YQEH GTPase; atnos1, at 95.6 0.024 8.3E-07 55.4 7.8 55 238-292 98-165 (369)
441 1aky_A Adenylate kinase; ATP:A 95.6 0.0067 2.3E-07 54.4 3.5 24 62-85 4-27 (220)
442 2ze6_A Isopentenyl transferase 95.6 0.0067 2.3E-07 56.0 3.4 22 64-85 3-24 (253)
443 1zd8_A GTP:AMP phosphotransfer 95.6 0.0067 2.3E-07 54.7 3.3 24 62-85 7-30 (227)
444 2p5t_B PEZT; postsegregational 95.5 0.0048 1.6E-07 56.9 2.4 25 62-86 32-56 (253)
445 2pbr_A DTMP kinase, thymidylat 95.5 0.0071 2.4E-07 52.5 3.3 21 64-84 2-22 (195)
446 2pt5_A Shikimate kinase, SK; a 95.5 0.0077 2.6E-07 51.2 3.4 21 64-84 2-22 (168)
447 2iyv_A Shikimate kinase, SK; t 95.5 0.0065 2.2E-07 52.6 2.9 22 63-84 3-24 (184)
448 3r20_A Cytidylate kinase; stru 95.5 0.0074 2.5E-07 55.3 3.3 23 63-85 10-32 (233)
449 1gvn_B Zeta; postsegregational 95.5 0.0071 2.4E-07 57.0 3.3 24 62-85 33-56 (287)
450 1xjc_A MOBB protein homolog; s 95.5 0.008 2.7E-07 52.3 3.3 24 63-86 5-28 (169)
451 1qf9_A UMP/CMP kinase, protein 95.4 0.0082 2.8E-07 51.9 3.4 22 63-84 7-28 (194)
452 2vli_A Antibiotic resistance p 95.4 0.0062 2.1E-07 52.5 2.5 24 62-85 5-28 (183)
453 1e6c_A Shikimate kinase; phosp 95.4 0.0076 2.6E-07 51.4 2.9 21 64-84 4-24 (173)
454 1lv7_A FTSH; alpha/beta domain 95.4 0.0064 2.2E-07 55.8 2.5 23 64-86 47-69 (257)
455 1zak_A Adenylate kinase; ATP:A 95.3 0.0076 2.6E-07 54.1 2.8 24 62-85 5-28 (222)
456 1ukz_A Uridylate kinase; trans 95.3 0.0097 3.3E-07 52.4 3.3 24 62-85 15-38 (203)
457 1e4v_A Adenylate kinase; trans 95.2 0.0093 3.2E-07 53.2 3.1 21 64-84 2-22 (214)
458 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.011 3.7E-07 54.7 3.6 24 62-85 4-27 (260)
459 3be4_A Adenylate kinase; malar 95.2 0.01 3.5E-07 53.1 3.3 24 62-85 5-28 (217)
460 2xb4_A Adenylate kinase; ATP-b 95.2 0.01 3.5E-07 53.4 3.3 21 64-84 2-22 (223)
461 3tlx_A Adenylate kinase 2; str 95.2 0.011 3.9E-07 54.0 3.6 23 62-84 29-51 (243)
462 3ake_A Cytidylate kinase; CMP 95.2 0.011 3.7E-07 52.0 3.3 22 64-85 4-25 (208)
463 1t9h_A YLOQ, probable GTPase E 95.1 0.0039 1.3E-07 59.6 0.1 44 238-281 117-169 (307)
464 2ffh_A Protein (FFH); SRP54, s 95.1 0.023 7.9E-07 56.6 5.7 33 52-88 92-124 (425)
465 4ido_A Atlastin-1; GTPase, GTP 95.1 0.02 6.8E-07 57.4 5.2 59 63-121 68-152 (457)
466 1zuh_A Shikimate kinase; alpha 95.1 0.013 4.4E-07 49.9 3.4 22 63-84 8-29 (168)
467 3sr0_A Adenylate kinase; phosp 95.0 0.013 4.4E-07 52.5 3.3 22 64-85 2-23 (206)
468 2dhr_A FTSH; AAA+ protein, hex 95.0 0.006 2.1E-07 62.2 1.2 30 53-86 59-88 (499)
469 3k1j_A LON protease, ATP-depen 94.9 0.016 5.4E-07 60.4 4.0 27 62-88 60-86 (604)
470 2grj_A Dephospho-COA kinase; T 94.9 0.015 5E-07 51.5 3.3 23 63-85 13-35 (192)
471 1jbk_A CLPB protein; beta barr 94.8 0.017 5.9E-07 49.2 3.4 23 63-85 44-66 (195)
472 1ak2_A Adenylate kinase isoenz 94.8 0.017 5.8E-07 52.3 3.5 24 62-85 16-39 (233)
473 4ad8_A DNA repair protein RECN 94.8 0.0076 2.6E-07 61.6 1.2 30 55-85 54-83 (517)
474 3umf_A Adenylate kinase; rossm 94.7 0.019 6.4E-07 51.9 3.6 23 63-85 30-52 (217)
475 3bos_A Putative DNA replicatio 94.7 0.018 6E-07 51.5 3.4 24 63-86 53-76 (242)
476 1uj2_A Uridine-cytidine kinase 94.7 0.016 5.6E-07 53.1 3.3 23 63-85 23-45 (252)
477 3auy_A DNA double-strand break 94.6 0.021 7.3E-07 55.6 4.1 21 63-83 26-46 (371)
478 4edh_A DTMP kinase, thymidylat 94.6 0.012 4.1E-07 53.0 2.0 25 62-86 6-30 (213)
479 2f6r_A COA synthase, bifunctio 94.6 0.017 5.9E-07 54.1 3.1 21 63-83 76-96 (281)
480 2w58_A DNAI, primosome compone 94.5 0.022 7.5E-07 50.0 3.4 24 63-86 55-78 (202)
481 1j8m_F SRP54, signal recogniti 94.4 0.014 4.9E-07 55.3 2.3 26 62-87 98-123 (297)
482 2qby_A CDC6 homolog 1, cell di 94.4 0.021 7.2E-07 54.8 3.5 25 62-86 45-69 (386)
483 3ice_A Transcription terminati 94.4 0.01 3.4E-07 58.4 1.1 31 53-85 167-197 (422)
484 1ltq_A Polynucleotide kinase; 94.4 0.022 7.7E-07 53.3 3.4 22 63-84 3-24 (301)
485 3hr8_A Protein RECA; alpha and 94.3 0.023 8E-07 55.2 3.4 25 62-86 61-85 (356)
486 2ga8_A Hypothetical 39.9 kDa p 94.2 0.019 6.5E-07 55.8 2.4 23 64-86 26-48 (359)
487 3b9p_A CG5977-PA, isoform A; A 94.1 0.022 7.4E-07 53.3 2.8 24 63-86 55-78 (297)
488 3cf0_A Transitional endoplasmi 94.1 0.026 8.9E-07 53.2 3.3 24 63-86 50-73 (301)
489 3gmt_A Adenylate kinase; ssgci 94.1 0.029 9.9E-07 51.2 3.3 24 62-85 8-31 (230)
490 2p65_A Hypothetical protein PF 94.0 0.023 7.9E-07 48.4 2.5 22 64-85 45-66 (187)
491 1sxj_C Activator 1 40 kDa subu 94.0 0.021 7.1E-07 54.8 2.4 22 65-86 49-70 (340)
492 1ypw_A Transitional endoplasmi 94.0 0.016 5.4E-07 62.6 1.6 25 62-86 238-262 (806)
493 3n70_A Transport activator; si 94.0 0.04 1.4E-06 45.9 3.8 24 63-86 25-48 (145)
494 2qmh_A HPR kinase/phosphorylas 93.9 0.036 1.2E-06 49.4 3.5 25 62-86 34-58 (205)
495 3hws_A ATP-dependent CLP prote 93.8 0.16 5.4E-06 49.0 8.4 24 63-86 52-75 (363)
496 1njg_A DNA polymerase III subu 93.8 0.034 1.2E-06 49.1 3.3 22 64-85 47-68 (250)
497 1fnn_A CDC6P, cell division co 93.8 0.028 9.6E-07 54.2 2.8 23 64-86 46-68 (389)
498 2ocp_A DGK, deoxyguanosine kin 93.6 0.039 1.3E-06 50.1 3.4 25 62-86 2-26 (241)
499 4ag6_A VIRB4 ATPase, type IV s 93.6 0.033 1.1E-06 54.6 3.1 25 62-86 35-59 (392)
500 2h92_A Cytidylate kinase; ross 93.6 0.036 1.2E-06 49.3 3.1 23 63-85 4-26 (219)
No 1
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-69 Score=536.19 Aligned_cols=364 Identities=58% Similarity=0.967 Sum_probs=332.6
Q ss_pred CHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHhhhhcCCCCCC--CCCCcceEEEEeCCeEEEEEcCCCCcHHHHH
Q 015822 2 GIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGS--SGAGEGFEVTKFGHGRVALIGFPSVGKSTLL 79 (399)
Q Consensus 2 ~~~~~i~~le~~i~~~~~~k~t~~~~~~l~~~l~~l~~~~~~~~~~~--~~~~~~~~v~~~~g~~valvG~~gaGKSTLl 79 (399)
|++|||+++|+||+++||||||++|++++|++|++|++|++...+++ ++++.+|+|.++|..+|||||+|||||||||
T Consensus 10 t~~eki~~ie~~~~~~~k~k~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~ 89 (376)
T 4a9a_A 10 TTVEKIKAIEDEMARTQKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLL 89 (376)
T ss_dssp HHHHHHHHHHHHHHHSCCSTTTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHH
Confidence 59999999999999999999999999999999999999987765443 3457799999999999999999999999999
Q ss_pred HHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhhHHHHhcCCcHHHHHHH
Q 015822 80 TLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQIL 159 (399)
Q Consensus 80 n~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i 159 (399)
|+|||..+.+++|||||++|+.|.+.++|.+++++||||++++++.+.+++++++..++++|++++|+|++.+..+.+.+
T Consensus 90 n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i 169 (376)
T 4a9a_A 90 SKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQII 169 (376)
T ss_dssp HHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHH
T ss_pred HHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhh-cccc
Q 015822 160 TKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG-NRKY 238 (399)
Q Consensus 160 ~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~-~~~~ 238 (399)
..+|+.+++.+++++..+......+.++.+....++..++.+.+..++..+.+.++.+++..+++.+++.+.+.. ++.+
T Consensus 170 ~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~ 249 (376)
T 4a9a_A 170 EKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRY 249 (376)
T ss_dssp HHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEE
T ss_pred HHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhc
Confidence 999999999888888888888888888888888899999999999999999888888899999999999998864 6778
Q ss_pred ccEEEEEecCCCCChhhHHHHHcCCCEEEecchhccchHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecCCCCCCH
Q 015822 239 MKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTV 318 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~~~~~l~~~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~r~g~tv 318 (399)
.|+++++||+|....++++.+.+.+..+++|+..+.|++.|.+++|+.|+++++||++++..++++.|..++. .++|+
T Consensus 250 ~p~i~v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a--~~at~ 327 (376)
T 4a9a_A 250 MPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRS--DRCSV 327 (376)
T ss_dssp ECEEEEEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBT--TBCBH
T ss_pred cceEEEEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccC--CCCcH
Confidence 9999999999998888888888888899999999999999999999999999999999998889999999987 34899
Q ss_pred HHHHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCeEEEEec
Q 015822 319 EDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKK 367 (399)
Q Consensus 319 ~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dvv~i~~~ 367 (399)
.|+|..||+|+.++|+||.+||+++|+.||++|+||+|+|||||+||++
T Consensus 328 ~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~k 376 (376)
T 4a9a_A 328 KDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILKK 376 (376)
T ss_dssp HHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999985
No 2
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=4.1e-40 Score=329.72 Aligned_cols=292 Identities=24% Similarity=0.345 Sum_probs=194.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEE---------------------CC---EeecccCcccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------ND---TKIQLLDLPGI 119 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~---------------------~g---~~i~~iD~~Gl 119 (399)
+|+|||.||||||||||+|+|..+.+++|||||++|+.|.+.+ ++ .++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 6899999999999999999999888899999999999998643 33 58999999999
Q ss_pred ccccccCcccchhhccccCChhhhHHHHhcCC-------------cHHHHHHHHHHHHHcCC-cccccccccchhhHhhc
Q 015822 120 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASK-------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTG 185 (399)
Q Consensus 120 ~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~-------------~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~ 185 (399)
..+++.+.+++++++..++.+|++++|+|++. |..+.+.+..+|..+.+ .+++++..+. .+..+.
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~-k~~~~~ 160 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFA-KRIKLQ 160 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHH-STTTSS
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHhhc
Confidence 88777777778888888999999999999865 45677788888887754 3555555444 111111
Q ss_pred Cceee--eccCC--CCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccc-cccEEEEEecCCCCChhhHHHHH
Q 015822 186 GISFN--STLPL--THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRK-YMKCVYVYNKIDVIGIDDVDKLA 260 (399)
Q Consensus 186 ~iali--~DEpt--s~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~-~~p~iiv~NK~Dl~~~~~~~~l~ 260 (399)
...+. +.+-+ -+.+.+.+..+++.+..... ..+|+.++.......... .+|+++|+||+|+...+++..+.
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~~~~l~~l~ 236 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLV 236 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCHHHHHHHH
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEEeCccccchHHHHHHH
Confidence 11100 00111 14567788889998876554 246777665544433222 48999999999988555455443
Q ss_pred c-----CCCEEEecchhccchHHH------------------------------------------------H-HHHHHH
Q 015822 261 R-----QPNSVVISCNLKLNLDRL------------------------------------------------L-ARMWEE 286 (399)
Q Consensus 261 ~-----~~~~i~vSa~~~~gl~~L------------------------------------------------~-~~i~~~ 286 (399)
+ ...++++||..+.++++| + +.+|+.
T Consensus 237 ~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g~~g~~~~i~~~~~~~ 316 (397)
T 1wxq_A 237 REEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEVINRVVFDL 316 (397)
T ss_dssp HHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSSSCSHHHHHHHHHHTT
T ss_pred HHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 2 235899999999887532 1 366899
Q ss_pred hCceEEEeCCCC------CCCCCCCcEEeecCCCCCCHHHHHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCC
Q 015822 287 MGLVRVYTKPQG------QQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDED 360 (399)
Q Consensus 287 l~~i~~~~~~~~------~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~d 360 (399)
|+++++||.++. ..+++.++|++++ |+|+.|+|+.||+||.++|+||.. + ..+||||+||+|+|||
T Consensus 317 L~li~vft~~~~~~~~~~~g~~~~~~~~l~~---G~t~~d~a~~iH~d~~~~f~~a~~----~-~~~~~~g~~~~l~dgD 388 (397)
T 1wxq_A 317 LKLIPVYPVHDENKLTDQFGNVLPHVFLMKK---GSTPRDLAFKVHTDLGKGFLYAIN----A-RTKRRVGEDYELQFND 388 (397)
T ss_dssp SCEEEEEEESCC-----CCSCSSCCCEEEET---TCCHHHHHHHHCHHHHHTEEEEEE----T-TTCSBCCTTCCCCTTE
T ss_pred hCCeEEEeecccccccCCcCcccceeEEeCC---CCCHHHHHHHHhHHHHhhhhhhHH----h-cCCEEcCCCccccCCC
Confidence 999999994311 1135678999999 999999999999999999999985 4 4889999999999999
Q ss_pred eEEEEecc
Q 015822 361 VVQIVKKK 368 (399)
Q Consensus 361 vv~i~~~~ 368 (399)
||+|++++
T Consensus 389 vv~i~~~~ 396 (397)
T 1wxq_A 389 IVKIVSVT 396 (397)
T ss_dssp EEEEEEC-
T ss_pred EEEEEeCC
Confidence 99999875
No 3
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=8.3e-40 Score=322.26 Aligned_cols=285 Identities=21% Similarity=0.296 Sum_probs=203.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC-----------------EeecccCcccccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGASE 125 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-----------------~~i~~iD~~Gl~~~~~~ 125 (399)
.+|+|||.||||||||||+|++....+++|||||++|+.|.+.+++ ..++++||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 5899999999999999999999888899999999999999999877 46899999999988777
Q ss_pred CcccchhhccccCChhhhHHHHhcCC------------cHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCceeeec
Q 015822 126 GKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNST 192 (399)
Q Consensus 126 ~~~~~~q~~~~~~~~d~il~v~d~~~------------~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~iali~D 192 (399)
+.+++++++..++.+|++++|+|++. +..+.+.+..+|..+++ .+.+++..+.- +.+.+.. +
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k--~~k~g~~---~ 157 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQK--RAKGGDK---E 157 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTTCH---H
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHH--Hhhccch---h
Confidence 77778888888899999999998864 45566777788776655 34444333321 0111100 0
Q ss_pred cCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhh--ccccccEEEEEecCCCC--ChhhHHHHHc-----CC
Q 015822 193 LPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDVI--GIDDVDKLAR-----QP 263 (399)
Q Consensus 193 Epts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~--~~~~~p~iiv~NK~Dl~--~~~~~~~l~~-----~~ 263 (399)
-+ ...+.+..+.+.+.. +.. +-+-+|+.++ ...+.. ....+|+++|+|+.|.. .....+.+.+ ..
T Consensus 158 ~~---~~~~~l~~~~~~L~~-~~~-~~~~~~~~~e-~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~ 231 (363)
T 1jal_A 158 AK---FELSVMEKILPVLEN-AGM-IRSVGLDKEE-LQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGA 231 (363)
T ss_dssp HH---HHHHHHHHHHHHHHT-TCC-GGGSCCCHHH-HHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTC
T ss_pred HH---HHHHHHHHHHHHHhc-CCC-ccccCCCHHH-HHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCC
Confidence 00 000112222222221 111 1122566555 233332 24459999999999864 2333444432 23
Q ss_pred CEEEecchhc----------------------cchHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecCCCCCCHHHH
Q 015822 264 NSVVISCNLK----------------------LNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDF 321 (399)
Q Consensus 264 ~~i~vSa~~~----------------------~gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~r~g~tv~~~ 321 (399)
+++++||+.+ .|++.|++++|+.|+++++||.+ |++.+||++++ |+|++++
T Consensus 232 ~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g----~~e~raw~i~~---G~ta~~a 304 (363)
T 1jal_A 232 VVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAG----VKEVRAWTVSV---GATAPKA 304 (363)
T ss_dssp EEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEEC----SSEEEEEEEET---TCBHHHH
T ss_pred CEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCC----CCCcceeEecC---CCcHHHH
Confidence 5899998763 57899999999999999999986 57889999999 9999999
Q ss_pred HHHHHHHHhhccceeEEecc----------CCccCC--cccCCCceecCCCeEEEE
Q 015822 322 CNHIHRSLVKDVKYVLVWGT----------SARHYP--QHCGLGHVLQDEDVVQIV 365 (399)
Q Consensus 322 a~~ih~~l~~~f~~a~~wg~----------s~~~~~--~rvg~~~~l~d~dvv~i~ 365 (399)
|..||+||.++|.||.+|+. +||..| +++|+||+|+|||||+|.
T Consensus 305 Ag~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~ 360 (363)
T 1jal_A 305 AAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFR 360 (363)
T ss_dssp HHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEE
T ss_pred HHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEE
Confidence 99999999999999999983 267777 777999999999999985
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=1.3e-38 Score=315.38 Aligned_cols=283 Identities=20% Similarity=0.269 Sum_probs=203.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC---------------------CEeecccCccccccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---------------------DTKIQLLDLPGIIEG 122 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~---------------------g~~i~~iD~~Gl~~~ 122 (399)
+|+|||+||||||||||+|++..+.+++|||||++|+.|.+.+. +..++++||||+.++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~ 82 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKG 82 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccc
Confidence 68999999999999999999987778999999999999998654 356899999999988
Q ss_pred cccCcccchhhccccCChhhhHHHHhcCC------------cHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCcee
Q 015822 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISF 189 (399)
Q Consensus 123 ~~~~~~~~~q~~~~~~~~d~il~v~d~~~------------~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~ial 189 (399)
++.+.+++++++..++.+|++++|+|++. +..+.+.+..+|...++ .+.+++..+... .+...
T Consensus 83 a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~--~~~~~-- 158 (368)
T 2dby_A 83 AHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKE--ARADR-- 158 (368)
T ss_dssp CCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCG--
T ss_pred ccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhh--hccch--
Confidence 87777888888888999999999999874 34455666777765554 233333322110 00000
Q ss_pred eeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhh--ccccccEEEEEecCCC--CC---hhhHHHHHc-
Q 015822 190 NSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDV--IG---IDDVDKLAR- 261 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~--~~~~~p~iiv~NK~Dl--~~---~~~~~~l~~- 261 (399)
....-.+.+..++..+.. +..+ -+-+|+.++ ...+.. ....+|+++|+||.|. .. ....+.+.+
T Consensus 159 -----~~~~~~~~l~~~~~~L~~-~~~~-~~~~~~~~~-~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~ 230 (368)
T 2dby_A 159 -----ERLPLLEAAEGLYVHLQE-GKPA-RTFPPSEAV-ARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRK 230 (368)
T ss_dssp -----GGHHHHHHHHHHHHHHHT-TCCG-GGSCCCHHH-HHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHhc-CCCc-ccCCCCHHH-HHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHH
Confidence 000000112222222221 1111 123565444 223322 3445899999999973 22 233333322
Q ss_pred ----CCCEEEecchh----------------------ccchHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecCCCC
Q 015822 262 ----QPNSVVISCNL----------------------KLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDRGG 315 (399)
Q Consensus 262 ----~~~~i~vSa~~----------------------~~gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~r~g 315 (399)
..+++++||+. +.|++.|++++|+.|+++++||.+ |++.+||++++ |
T Consensus 231 a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g----~~e~~aw~i~~---g 303 (368)
T 2dby_A 231 ALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAG----EKEVRAWTVRR---G 303 (368)
T ss_dssp HHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEES----SSCEEEEEEET---T
T ss_pred HHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCC----CCCcceEEecC---C
Confidence 24589999987 357889999999999999999985 67889999999 9
Q ss_pred CCHHHHHHHHHHHHhhccceeEEecc----------CCccCC--cccCCCceecCCCeEEEE
Q 015822 316 CTVEDFCNHIHRSLVKDVKYVLVWGT----------SARHYP--QHCGLGHVLQDEDVVQIV 365 (399)
Q Consensus 316 ~tv~~~a~~ih~~l~~~f~~a~~wg~----------s~~~~~--~rvg~~~~l~d~dvv~i~ 365 (399)
+|++++|..||+||.++|+||.+|+. +||..| +++|+||+|+|||||+|.
T Consensus 304 ~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~ 365 (368)
T 2dby_A 304 TKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVL 365 (368)
T ss_dssp CBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEE
T ss_pred CcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEE
Confidence 99999999999999999999999983 267777 777999999999999985
No 5
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.5e-39 Score=317.55 Aligned_cols=284 Identities=19% Similarity=0.272 Sum_probs=183.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE-----------------eecccCccccccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGAS 124 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~-----------------~i~~iD~~Gl~~~~~ 124 (399)
+.+++|||+||||||||||+|+|....+++|||||++|+.|.+.+.|. .++++||||+..+++
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 568999999999999999999999888999999999999999988763 488999999998888
Q ss_pred cCcccchhhccccCChhhhHHHHhcCC------------cHHHHHHHHHHHHHcCC-cccccccc-----cchhhHhhcC
Q 015822 125 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQ-----IYFKKKKTGG 186 (399)
Q Consensus 125 ~~~~~~~q~~~~~~~~d~il~v~d~~~------------~~~~~~~i~~~L~~~gi-~~~~~~~~-----LS~g~kqr~~ 186 (399)
.+.+++++++..++++|++++|+|++. |..+.+.+..+|....+ .+.+.... .|+|.+.
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~~~~g~~~--- 178 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKK--- 178 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC----------
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhhhcccchh---
Confidence 788888888888999999999988753 44556667666655443 12221111 1111111
Q ss_pred ceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhh--ccccccEEEEEecCC--CC--ChhhHHHHH
Q 015822 187 ISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKID--VI--GIDDVDKLA 260 (399)
Q Consensus 187 iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~--~~~~~p~iiv~NK~D--l~--~~~~~~~l~ 260 (399)
.....+.+..+...|......+....+|+.++ .+.+.. ...++|+++++|+.+ .. ....+..+.
T Consensus 179 ---------~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e-~e~i~~~~llt~KPviy~~Nv~e~~~~~~~n~~~~~v~ 248 (396)
T 2ohf_A 179 ---------LKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKE-IEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIK 248 (396)
T ss_dssp ----------CCHHHHHHHHHHHTTC--CCGGGCCCCCHHH-HHHHHHHCCGGGSCEEEEEECCHHHHHHTCCHHHHHHH
T ss_pred ---------hhhHHHHHHHHHHHHHhcCcchhhcccCCHHH-HHHHHHHHHHhCCceEEEEEecHHHhcccccHHHHHHH
Confidence 01111222223222221101111123687775 233333 345799999999973 32 122233332
Q ss_pred c-------CCCEEEecchhc---------------------cchHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecC
Q 015822 261 R-------QPNSVVISCNLK---------------------LNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVD 312 (399)
Q Consensus 261 ~-------~~~~i~vSa~~~---------------------~gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~ 312 (399)
+ ...++++||..+ .||+.|+++.|+.|+++++||++ |++.+||++++
T Consensus 249 ~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g----~~evrawti~~- 323 (396)
T 2ohf_A 249 EWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAG----PDEVRAWTIRK- 323 (396)
T ss_dssp HHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEES----SSEEEEEEEET-
T ss_pred HHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCC----CCcceeEEecC-
Confidence 2 134899999976 34899999999999999999997 57789999999
Q ss_pred CCCCCHHHHHHHHHHHHhhccceeEEe--------cc--CCccCC--cccCCCceecCCCeEEEE
Q 015822 313 RGGCTVEDFCNHIHRSLVKDVKYVLVW--------GT--SARHYP--QHCGLGHVLQDEDVVQIV 365 (399)
Q Consensus 313 r~g~tv~~~a~~ih~~l~~~f~~a~~w--------g~--s~~~~~--~rvg~~~~l~d~dvv~i~ 365 (399)
|+|+.++|..||+||.++|+||.|| |. +||..| +++|+||+|+|||||+|-
T Consensus 324 --g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~ 386 (396)
T 2ohf_A 324 --GTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFK 386 (396)
T ss_dssp --TCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEE
T ss_pred --CCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEE
Confidence 9999999999999999999999999 55 477887 999999999999999984
No 6
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=3.9e-37 Score=306.55 Aligned_cols=288 Identities=17% Similarity=0.255 Sum_probs=205.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECC-----------------EeecccCcccccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGA 123 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g-----------------~~i~~iD~~Gl~~~~ 123 (399)
+.+++|||+||||||||||+|+|... .+++|||||++|+.|.+.++| ..+.++|+||+..+.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 67999999999999999999999886 899999999999999999987 468899999999888
Q ss_pred ccCcccchhhccccCChhhhHHHHhcCC------------cHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCceee
Q 015822 124 SEGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFN 190 (399)
Q Consensus 124 ~~~~~~~~q~~~~~~~~d~il~v~d~~~------------~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~iali 190 (399)
+.+.+++++++..++.+|.+++++|++. |..+...+.+.+..+.+ .+.+.+..+..-. .+.+..++
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~-~~~g~ti~ 178 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKIT-SRGANTLE 178 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCSSCSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHH-HhcCCccc
Confidence 7777788888888899999999988764 33355556665554433 1111111110000 00000000
Q ss_pred eccCCCCCCHHHHHHHHHHhh--hCCc-EEEEcCCCCHHHHHHHHhh--ccccccEEEEEecCCC--C-C-hhhHHHHHc
Q 015822 191 STLPLTHVDEKLCYQILHEYK--IHNA-EVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDV--I-G-IDDVDKLAR 261 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~~l~--~~~~-~v~vthd~~~~~~~~~i~~--~~~~~p~iiv~NK~Dl--~-~-~~~~~~l~~ 261 (399)
+ -+...+.+++..+. +... .++...+|+.++. +.+.. ....+|+++++|+.|. . . .+.++.+.+
T Consensus 179 -----s-h~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~-e~i~~~~~lt~kp~~y~~Nv~e~~~~~~~~~~~~~~~~ 251 (392)
T 1ni3_A 179 -----M-KAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREV-EIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKK 251 (392)
T ss_dssp -----H-HHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHH-HHHHTTCCGGGSCEEEEEECCHHHHTTTCCSSHHHHHH
T ss_pred -----c-ccHHHHHHHHHHHHHHhccCCceeecCCCCHHHH-HHHHHHhhhccCceEEEEEecchhhcccchHHHHHHHH
Confidence 0 01123333433332 1222 1222356666643 33322 3556999999999973 2 1 333444432
Q ss_pred ----C---CCEEEecchh---------------------ccchHHHHHHHHHHhCceEEEeCCCCCCCCCCCcEEeecCC
Q 015822 262 ----Q---PNSVVISCNL---------------------KLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVDR 313 (399)
Q Consensus 262 ----~---~~~i~vSa~~---------------------~~gl~~L~~~i~~~l~~i~~~~~~~~~~p~~~~~~~v~~~r 313 (399)
. ..++++||.. +.|++.|+++.|+.|+++++||.+ |+..++|++++
T Consensus 252 ~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g----~~e~rawti~~-- 325 (392)
T 1ni3_A 252 WIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCG----EDEVRSWTIRK-- 325 (392)
T ss_dssp HHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECC----SSEEEEEEEET--
T ss_pred HHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCC----CCcceeEEeCC--
Confidence 2 3589999987 578999999999999999999986 56789999999
Q ss_pred CCCCHHHHHHHHHHHHhhccceeEEe--------ccC--CccC-Ccc-cCCCceecCCCeEEE
Q 015822 314 GGCTVEDFCNHIHRSLVKDVKYVLVW--------GTS--ARHY-PQH-CGLGHVLQDEDVVQI 364 (399)
Q Consensus 314 ~g~tv~~~a~~ih~~l~~~f~~a~~w--------g~s--~~~~-~~r-vg~~~~l~d~dvv~i 364 (399)
|+|+.++|..||+||+++|.+|.+| |.. +|.. ++| +|+||+|+|||||++
T Consensus 326 -G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f 387 (392)
T 1ni3_A 326 -GTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHW 387 (392)
T ss_dssp -TCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEEC
T ss_pred -CCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEE
Confidence 9999999999999999999999999 442 4543 466 999999999999986
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.94 E-value=2.7e-28 Score=190.41 Aligned_cols=86 Identities=56% Similarity=0.938 Sum_probs=81.9
Q ss_pred HHHhCceEEEeCCCCCCCCCCCcEEe-ecCCCCCCHHHHHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCeE
Q 015822 284 WEEMGLVRVYTKPQGQQPDFTEPVVL-SVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVV 362 (399)
Q Consensus 284 ~~~l~~i~~~~~~~~~~p~~~~~~~v-~~~r~g~tv~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dvv 362 (399)
|+.|++|||||+++|..||+++|+++ ++ |+|++|+|++||++|.++|+||+|||+||||+|||||+||+|+|||||
T Consensus 6 ~~~L~lIrVYtk~~G~~pd~~dpviL~~~---GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV 82 (93)
T 2eki_A 6 SGYLKLVRIYTKPKGQLPDYTSPVVLPYS---RTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVI 82 (93)
T ss_dssp SSSCCEEEEEECCTTSCCCSSSCEEEETT---SCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEE
T ss_pred hhhcCeEEEEeCCCCCCCCCCCCEEEecC---CCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEE
Confidence 67899999999999999999999999 77 999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccc
Q 015822 363 QIVKKKEKEE 372 (399)
Q Consensus 363 ~i~~~~~~~~ 372 (399)
+||++..++.
T Consensus 83 ~Iv~~~~~~~ 92 (93)
T 2eki_A 83 QIVKKSGPSS 92 (93)
T ss_dssp CEEECCSCCC
T ss_pred EEEeCCCCCC
Confidence 9999976654
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=1.6e-25 Score=208.71 Aligned_cols=175 Identities=18% Similarity=0.178 Sum_probs=126.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+||||||||||+++|+|...| .+|.|.++|.++...+...+.......+++.+
T Consensus 23 ~isl~i~~--Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~ 89 (235)
T 3tif_A 23 NVNLNIKE--GEFVSIMGPSGSGKSTMLNIIGCLDKP-----------TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVF 89 (235)
T ss_dssp EEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHHHHHHHHHHEEEEC
T ss_pred eeeEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHHHHHhhccEEEEe
Confidence 67777777 789999999999999999999999866 89999999998865543222111223467777
Q ss_pred hhccccCCh---hhhHHHHhc-----CCcHHHHHHHHHHHHHcCC--c-ccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKSS---DIVLMVLDA-----SKSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~-----~~~~~~~~~i~~~L~~~gi--~-~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+... +.+.+.... .......+.+.+.|+.+++ . .++++.+|||||+||++|| +++
T Consensus 90 Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll 169 (235)
T 3tif_A 90 QQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169 (235)
T ss_dssp TTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 776555543 333332221 1233445678889999998 3 4889999999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
||||++||+.....+ ++.+.. ..++|++|||+.... +...++++++.-
T Consensus 170 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~----------~~d~i~~l~~G~ 222 (235)
T 3tif_A 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR----------FGERIIYLKDGE 222 (235)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHT----------TSSEEEEEETTE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH----------hCCEEEEEECCE
Confidence 999999999855544 444432 459999999975422 245677777543
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=4.7e-25 Score=217.04 Aligned_cols=177 Identities=18% Similarity=0.203 Sum_probs=133.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+||||||||||+++|+|...| ++|.|.++|.++...+...+. ..+..+++.+
T Consensus 46 ~vsl~i~~--Gei~~IiGpnGaGKSTLlr~i~GL~~p-----------~~G~I~i~G~~i~~~~~~~~~-~~r~~Ig~v~ 111 (366)
T 3tui_C 46 NVSLHVPA--GQIYGVIGASGAGKSTLIRCVNLLERP-----------TEGSVLVDGQELTTLSESELT-KARRQIGMIF 111 (366)
T ss_dssp EEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECSSCCHHHHH-HHHTTEEEEC
T ss_pred eeEEEEcC--CCEEEEEcCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHHH-HHhCcEEEEe
Confidence 67788877 789999999999999999999999866 899999999998655432221 1235688888
Q ss_pred hhccccCCh---hhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+... +.+.+.... ....+..+++.++|+.+|+ ..++++.+|||||+||++|| |++||||
T Consensus 112 Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPT 191 (366)
T 3tui_C 112 QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQAT 191 (366)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred CCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 877666553 444443322 2234455678899999999 68899999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||+..... +++.+.. ..|+|++|||+....- +...++|+++.-+.
T Consensus 192 s~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~---------~aDrv~vl~~G~iv 243 (366)
T 3tui_C 192 SALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR---------ICDCVAVISNGELI 243 (366)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH---------HCSEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH---------hCCEEEEEECCEEE
Confidence 9999985554 4455542 3499999999865431 24667888876554
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=8.8e-25 Score=202.31 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=116.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|...| .+|.+.++|.++...+...........+++.+
T Consensus 22 ~vsl~i~~--Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~ 88 (224)
T 2pcj_A 22 GISLSVKK--GEFVSIIGASGSGKSTLLYILGLLDAP-----------TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVF 88 (224)
T ss_dssp EEEEEEET--TCEEEEEECTTSCHHHHHHHHTTSSCC-----------SEEEEEETTEECCSSCHHHHHHHHHHHEEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCHHHHHHHHhCcEEEEe
Confidence 67888887 789999999999999999999999765 89999999988754332111000113456666
Q ss_pred hhccccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+..... ......+.+.+.|+.+|+ ..++++.+||+||+||++|| +++||||
T Consensus 89 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 168 (224)
T 2pcj_A 89 QFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPT 168 (224)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 66544443 33443332221 222334568889999999 67899999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQ---ILHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~ 225 (399)
++||+..... +++.+.. ..+++++|||...
T Consensus 169 ~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 169 GNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 9999985554 4444443 3489999999543
No 11
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.91 E-value=2.4e-24 Score=211.77 Aligned_cols=176 Identities=17% Similarity=0.194 Sum_probs=132.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ++|.|.++|.++.-.++. .......+++++
T Consensus 22 ~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~i~~~~~~--~~~~~r~ig~vf 86 (359)
T 3fvq_A 22 DISLSLDP--GEILFIIGASGCGKTTLLRCLAGFEQP-----------DSGEISLSGKTIFSKNTN--LPVRERRLGYLV 86 (359)
T ss_dssp EEEEEECT--TCEEEEEESTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEESSSCB--CCGGGSCCEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEECcccccc--cchhhCCEEEEe
Confidence 67777777 789999999999999999999999866 899999999988422111 112345688889
Q ss_pred hhccccCChhhhHHHHhc-----CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMVLDA-----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~-----~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++...+...+... .......+++.+.|+.+++ ..++++.+|||||+||++|| |++||||
T Consensus 87 Q~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPt 166 (359)
T 3fvq_A 87 QEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPF 166 (359)
T ss_dssp TTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 987777765554443322 1234455678999999999 78999999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh----hh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCYQILHEY----KI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~~ll~~l----~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||.....+++..+ +. ..++|++|||..... .....++|+++.-+.
T Consensus 167 s~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~---------~~aDri~vl~~G~i~ 218 (359)
T 3fvq_A 167 SALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL---------QYADRIAVMKQGRIL 218 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH---------HHCSEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH---------HHCCEEEEEECCEEE
Confidence 999998655554433 22 348999999976532 124678888876554
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=2.3e-24 Score=213.31 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=131.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ++|.|.++|.++.... ....++++++
T Consensus 21 ~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~~~~~~------~~~r~ig~Vf 81 (381)
T 3rlf_A 21 DINLDIHE--GEFVVFVGPSGCGKSTLLRMIAGLETI-----------TSGDLFIGEKRMNDTP------PAERGVGMVF 81 (381)
T ss_dssp EEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTCC------GGGSCEEEEC
T ss_pred eeEEEECC--CCEEEEEcCCCchHHHHHHHHHcCCCC-----------CCeEEEECCEECCCCC------HHHCCEEEEe
Confidence 67777777 789999999999999999999999866 8999999999885432 1235688888
Q ss_pred hhccccCCh---hhhHHHHhc--CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~--~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++.. +.+.+.... ....+..+++.+.|+.+++ .+++++.+|||||+||++|| |++||||
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 987777664 444443332 2334445678899999999 78999999999999999998 9999999
Q ss_pred CCCCHHHHH---HHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCY---QILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~---~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||..... .+++.+.. ..++|++|||..... .....++|+++.-+.
T Consensus 162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~---------~~aDri~vl~~G~i~ 213 (381)
T 3rlf_A 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM---------TLADKIVVLDAGRVA 213 (381)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHH---------HHCSEEEEEETTEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH---------HhCCEEEEEECCEEE
Confidence 999988544 44555532 459999999976432 124678888876554
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=4.9e-24 Score=201.33 Aligned_cols=172 Identities=22% Similarity=0.179 Sum_probs=123.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+||||||||||+++|+|...| .+|.|.++|.++...+.. ......+++.+
T Consensus 25 ~vsl~i~~--Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~v~ 88 (257)
T 1g6h_A 25 GVSISVNK--GDVTLIIGPNGSGKSTLINVITGFLKA-----------DEGRVYFENKDITNKEPA---ELYHYGIVRTF 88 (257)
T ss_dssp EECCEEET--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHH---HHHHHTEEECC
T ss_pred eeEEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHH---HHHhCCEEEEc
Confidence 67888888 789999999999999999999999765 899999999887532211 11123466666
Q ss_pred hhccccCCh---hhhHHHHhc---------------CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---
Q 015822 132 QVIAVSKSS---DIVLMVLDA---------------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--- 188 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~---------------~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia--- 188 (399)
|....+... +.+.+.... .......+.+.+.|+.+|+ ..++++.+||+||+||++||
T Consensus 89 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL 168 (257)
T 1g6h_A 89 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRAL 168 (257)
T ss_dssp CCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred cCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHH
Confidence 655444432 333322111 1122334568889999999 67899999999999999998
Q ss_pred ------eeeccCCCCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 189 ------FNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 189 ------li~DEpts~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
+++||||++||+.....+ ++.+.. ..++|++|||..... .....++++++.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~---------~~~d~v~~l~~G 229 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL---------NYIDHLYVMFNG 229 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTG---------GGCSEEEEEETT
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH---------HhCCEEEEEECC
Confidence 999999999999855554 444443 348999999976532 123556666653
No 14
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.91 E-value=4.4e-24 Score=203.38 Aligned_cols=176 Identities=22% Similarity=0.206 Sum_probs=126.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+||||||||||+++|+|...+ .+|.|.++|.++...+ ... ...+..+++.+
T Consensus 26 ~isl~i~~--Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-----------~~G~I~~~G~~i~~~~-~~~-~~~~~~ig~v~ 90 (275)
T 3gfo_A 26 GINMNIKR--GEVTAILGGNGVGKSTLFQNFNGILKP-----------SSGRILFDNKPIDYSR-KGI-MKLRESIGIVF 90 (275)
T ss_dssp EEEEEEET--TSEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCCSH-HHH-HHHHHSEEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeEEEECCEECCccc-ccH-HHHhCcEEEEE
Confidence 67888887 789999999999999999999999765 8999999999874211 111 11234577777
Q ss_pred hhcc-ccCC---hhhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIA-VSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~-~~~~---~d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|... .+.. .+.+.+..... ...+..+++.+.|+.+|+ ..++++.+|||||+||++|| |++|||
T Consensus 91 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 91 QDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp SSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred cCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 7542 1222 33444333222 233445678899999999 67899999999999999998 999999
Q ss_pred CCCCCHHHHH---HHHHHhh-h-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 195 LTHVDEKLCY---QILHEYK-I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 195 ts~LD~~~v~---~ll~~l~-~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
|++||+.... ++++.+. . ..++|++|||+.... .+...++++++.-+.
T Consensus 171 ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~---------~~~drv~~l~~G~i~ 223 (275)
T 3gfo_A 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVP---------LYCDNVFVMKEGRVI 223 (275)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGG---------GGCSEEEEEETTEEE
T ss_pred cccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH---------HhCCEEEEEECCEEE
Confidence 9999998544 4555554 3 348999999987543 134667788765443
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.91 E-value=3.1e-24 Score=203.24 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=123.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+||||||||||+++|+|...| .+|.|.++|.++. .+..... ..+..+++.+
T Consensus 42 ~vsl~i~~--Gei~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~-~~~~~~~-~~~~~i~~v~ 106 (263)
T 2olj_A 42 GINVHIRE--GEVVVVIGPSGSGKSTFLRCLNLLEDF-----------DEGEIIIDGINLK-AKDTNLN-KVREEVGMVF 106 (263)
T ss_dssp EEEEEECT--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEESS-STTCCHH-HHHHHEEEEC
T ss_pred eeEEEEcC--CCEEEEEcCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEECC-CccccHH-HHhCcEEEEe
Confidence 67787777 789999999999999999999999765 8999999998875 2211111 1123456667
Q ss_pred hhccccCC---hhhhHHHH-hcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 132 QVIAVSKS---SDIVLMVL-DAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~-d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
|....+.. .+.+.+.. ... ......+++.++|+.+++ ..++++.+||+||+||++|| +++|||
T Consensus 107 Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEP 186 (263)
T 2olj_A 107 QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186 (263)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 76544443 33443322 111 222334568889999999 67899999999999999998 999999
Q ss_pred CCCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 195 LTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 195 ts~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
|++||+..... +++.+.. ..++|++|||...... ....++++++.-+
T Consensus 187 ts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~---------~~d~v~~l~~G~i 237 (263)
T 2olj_A 187 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFARE---------VGDRVLFMDGGYI 237 (263)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH---------HCSEEEEEETTEE
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH---------hCCEEEEEECCEE
Confidence 99999985544 4444443 3489999999654321 2355677765443
No 16
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=7.5e-24 Score=208.23 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=128.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ .+|.|.++|.++... + .....+++++
T Consensus 33 ~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~--~----~~~r~ig~v~ 93 (355)
T 1z47_A 33 GVSFQIRE--GEMVGLLGPSGSGKTTILRLIAGLERP-----------TKGDVWIGGKRVTDL--P----PQKRNVGLVF 93 (355)
T ss_dssp EEEEEEET--TCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTC--C----GGGSSEEEEC
T ss_pred eeEEEECC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECCcC--C----hhhCcEEEEe
Confidence 67788877 789999999999999999999999866 899999999987532 1 1235678888
Q ss_pred hhccccCCh---hhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++.. +.+.+..... ......+++.+.|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 94 Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 173 (355)
T 1z47_A 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPF 173 (355)
T ss_dssp GGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 877666653 4444433222 223345678899999999 68899999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||......+ ++.+.. ..++|++|||...... ....++++++.-+
T Consensus 174 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~---------~adri~vl~~G~i 224 (355)
T 1z47_A 174 AAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE---------VADRVLVLHEGNV 224 (355)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH---------HCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH---------hCCEEEEEECCEE
Confidence 99999854444 444432 4599999999654321 2356777776544
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.90 E-value=7.9e-24 Score=200.43 Aligned_cols=176 Identities=18% Similarity=0.166 Sum_probs=123.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecc----------cCcccccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL----------LDLPGIIE 121 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~----------iD~~Gl~~ 121 (399)
+++|++.+ |+.+||+||||||||||+++|+|...| .+|.|.++|.++.. .+.... .
T Consensus 24 ~vsl~i~~--Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~-~ 89 (262)
T 1b0u_A 24 GVSLQARA--GDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGAIIVNGQNINLVRDKDGQLKVADKNQL-R 89 (262)
T ss_dssp EEEEEECT--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCEEECTTSSEEESCHHHH-H
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEccccccccccccccChhhH-H
Confidence 67777777 789999999999999999999999765 89999999988741 111100 0
Q ss_pred ccccCcccchhhccccCCh---hhhHHHH-hcC--CcHHHHHHHHHHHHHcCC--c-ccccccccchhhHhhcCce----
Q 015822 122 GASEGKGRGRQVIAVSKSS---DIVLMVL-DAS--KSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS---- 188 (399)
Q Consensus 122 ~~~~~~~~~~q~~~~~~~~---d~il~v~-d~~--~~~~~~~~i~~~L~~~gi--~-~~~~~~~LS~g~kqr~~ia---- 188 (399)
..+..+++.+|....+... +.+.+.. ... ......+.+.+.|+.+|+ . .++++.+||+||+||++||
T Consensus 90 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~ 169 (262)
T 1b0u_A 90 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA 169 (262)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHh
Confidence 1123466777765444442 3343321 111 222334568889999999 5 7899999999999999998
Q ss_pred -----eeeccCCCCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 189 -----FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 189 -----li~DEpts~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
+++||||++||+..... +++.+.. ..++|++|||+..... +...++++++.-+
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~---------~~d~v~~l~~G~i 231 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH---------VSSHVIFLHQGKI 231 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHH---------HCSEEEEEETTEE
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 99999999999985544 4444443 3489999999654321 2355677765433
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=1.1e-23 Score=196.98 Aligned_cols=158 Identities=17% Similarity=0.139 Sum_probs=114.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|...| .+|.|.++|.++...+... ....++++.+
T Consensus 24 ~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~v~ 87 (240)
T 1ji0_A 24 GIDLKVPR--GQIVTLIGANGAGKTTTLSAIAGLVRA-----------QKGKIIFNGQDITNKPAHV---INRMGIALVP 87 (240)
T ss_dssp EEEEEEET--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHH---HHHTTEEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCCHHH---HHhCCEEEEe
Confidence 67788877 789999999999999999999999765 8999999999875332111 1123467777
Q ss_pred hhccccCChhhhHHHHhc----CCcHHHHHHHHHHHHHcC-C--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMVLDA----SKSEGHRQILTKELEAVG-L--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~----~~~~~~~~~i~~~L~~~g-i--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+....+...+.-. .......+.+.+.++.++ + ..++++..||+||+||++|| +++||||
T Consensus 88 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 167 (240)
T 1ji0_A 88 EGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp SSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred cCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 765555443333222111 112233456778888884 7 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQI---LHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~ 225 (399)
++||+.....+ ++.+.. ..+++++|||...
T Consensus 168 s~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 168 LGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201 (240)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 99999865544 444433 3489999999743
No 19
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.90 E-value=2.4e-23 Score=194.65 Aligned_cols=170 Identities=19% Similarity=0.192 Sum_probs=121.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ + .++|+||||||||||+++|+|...| .+|.+.++|.++.-. + .....+++.+
T Consensus 17 ~isl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~--~----~~~~~i~~v~ 76 (240)
T 2onk_A 17 NVDFEMGR-D--YCVLLGPTGAGKSVFLELIAGIVKP-----------DRGEVRLNGADITPL--P----PERRGIGFVP 76 (240)
T ss_dssp EEEEEECS-S--EEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTS--C----TTTSCCBCCC
T ss_pred eeEEEECC-E--EEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcC--c----hhhCcEEEEc
Confidence 56777776 5 9999999999999999999999765 899999999887421 1 1234567777
Q ss_pred hhccccCChhhhHHHHhc---CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKSSDIVLMVLDA---SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~---~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|....+....+...+.-. .......+++.+.|+.+|+ ..++++.+||+||+||+++| +++||||++
T Consensus 77 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~ 156 (240)
T 2onk_A 77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSA 156 (240)
T ss_dssp SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSS
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 765555443333332211 1112234568889999998 67899999999999999998 999999999
Q ss_pred CCHHHHHH---HHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 198 VDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 198 LD~~~v~~---ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||+..... ++..+.. ..+++++|||+....- ....++++++.-+
T Consensus 157 LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~---------~~d~i~~l~~G~i 205 (240)
T 2onk_A 157 VDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM---------LADEVAVMLNGRI 205 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH---------HCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEE
Confidence 99985544 4444432 4599999999754221 2355667765543
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.90 E-value=1.1e-23 Score=207.43 Aligned_cols=172 Identities=20% Similarity=0.251 Sum_probs=127.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ++|.|.++|.++.... .....+++.+
T Consensus 21 ~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~------~~~r~ig~v~ 81 (359)
T 2yyz_A 21 GVSFEVKD--GEFVALLGPSGCGKTTTLLMLAGIYKP-----------TSGEIYFDDVLVNDIP------PKYREVGMVF 81 (359)
T ss_dssp EEEEEECT--TCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTSC------GGGTTEEEEC
T ss_pred eeEEEEcC--CCEEEEEcCCCchHHHHHHHHHCCCCC-----------CccEEEECCEECCCCC------hhhCcEEEEe
Confidence 66777777 789999999999999999999999865 8999999999875332 1235678888
Q ss_pred hhccccCChhhhHHH---HhcCC-c-HHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMV---LDASK-S-EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v---~d~~~-~-~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++...+...+ ..... + .+..+++.+.|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 877666654443333 22222 1 2224568899999999 68899999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||......+ ++.+.. ..++|++|||...... ....++++++.-+.
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~---------~adri~vl~~G~i~ 213 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMT---------MASRIAVFNQGKLV 213 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH---------HCSEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH---------hCCEEEEEECCEEE
Confidence 99999855444 444432 4589999999754321 23567777765443
No 21
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.2e-23 Score=207.48 Aligned_cols=171 Identities=18% Similarity=0.196 Sum_probs=127.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ++|.|.++|.++.... .....+++++
T Consensus 21 ~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~------~~~r~ig~v~ 81 (362)
T 2it1_A 21 NINLKIKD--GEFMALLGPSGSGKSTLLYTIAGIYKP-----------TSGKIYFDEKDVTELP------PKDRNVGLVF 81 (362)
T ss_dssp EEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTSC------GGGTTEEEEC
T ss_pred eeEEEECC--CCEEEEECCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECCcCC------HhHCcEEEEe
Confidence 67777777 789999999999999999999999865 8999999999875332 1235678888
Q ss_pred hhccccCCh---hhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSS---DIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++.. +.+.+..... ......+++.+.|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 877666653 4444433222 223345678899999999 68899999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||......+ ++.+.. ..++|++|||..... .....++++++.-+
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~---------~~adri~vl~~G~i 212 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEAL---------AMADRIAVIREGEI 212 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH---------HHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH---------HhCCEEEEEECCEE
Confidence 99999854444 444432 458999999975432 12356777776544
No 22
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.90 E-value=8.9e-24 Score=200.46 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=123.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+||||||||||+++|+|...+ .+|.|.++|.++.-.+...+ ...+++.+
T Consensus 29 ~vsl~i~~--Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~----~~~i~~v~ 91 (266)
T 4g1u_C 29 DVSLHIAS--GEMVAIIGPNGAGKSTLLRLLTGYLSP-----------SHGECHLLGQNLNSWQPKAL----ARTRAVMR 91 (266)
T ss_dssp EEEEEEET--TCEEEEECCTTSCHHHHHHHHTSSSCC-----------SSCEEEETTEETTTSCHHHH----HHHEEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCCHHHH----hheEEEEe
Confidence 67888887 789999999999999999999999766 89999999998764432211 12345555
Q ss_pred hhccccCCh---hhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------------eee
Q 015822 132 QVIAVSKSS---DIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------FNS 191 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------------li~ 191 (399)
|....+... +.+.+...........+.+.+.|+.+++ ..++++.+|||||+||++|| |++
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLll 171 (266)
T 4g1u_C 92 QYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFL 171 (266)
T ss_dssp SCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEE
T ss_pred cCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 554333332 2222222212223345678899999998 67889999999999999886 578
Q ss_pred ccCCCCCCHHHHHH---HHHHhhh-CC-cEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 192 TLPLTHVDEKLCYQ---ILHEYKI-HN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 192 DEpts~LD~~~v~~---ll~~l~~-~~-~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||||++||+..... +++.+.. .+ +++++|||+.... .+...++++++..+
T Consensus 172 DEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~---------~~~d~v~vl~~G~i 226 (266)
T 4g1u_C 172 DEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAA---------LYADRIMLLAQGKL 226 (266)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHH---------HHCSEEEEEETTEE
T ss_pred eCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHH---------HhCCEEEEEECCEE
Confidence 99999999985544 4555543 34 8999999976533 12466788876543
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.90 E-value=1.9e-23 Score=206.93 Aligned_cols=177 Identities=20% Similarity=0.223 Sum_probs=128.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCcccc-ccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI-IEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl-~~~~~~~~~~~ 130 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ++|.|.++|.++.... .+. .......++++
T Consensus 21 ~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~~~-~~~~~~~~~r~ig~v 86 (372)
T 1g29_1 21 EMSLEVKD--GEFMILLGPSGCGKTTTLRMIAGLEEP-----------SRGQIYIGDKLVADPE-KGIFVPPKDRDIAMV 86 (372)
T ss_dssp EEEEEEET--TCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEEEGG-GTEECCGGGSSEEEE
T ss_pred eeEEEEcC--CCEEEEECCCCcHHHHHHHHHHcCCCC-----------CccEEEECCEECcccc-ccccCCHhHCCEEEE
Confidence 67788877 789999999999999999999999865 8999999999875310 000 01123567888
Q ss_pred hhhccccCCh---hhhHHHHhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccC
Q 015822 131 RQVIAVSKSS---DIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (399)
Q Consensus 131 ~q~~~~~~~~---d~il~v~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEp 194 (399)
+|....++.. +.+.+..... ......+++.+.|+.+++ ..++++.+|||||+||++|| +++|||
T Consensus 87 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 166 (372)
T 1g29_1 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166 (372)
T ss_dssp CSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 8877666653 4444433322 223345678899999999 68899999999999999998 999999
Q ss_pred CCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 195 LTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 195 ts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
|++||......+ ++.+.. ..++|++|||...... ....++++++.-+.
T Consensus 167 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~---------~adri~vl~~G~i~ 219 (372)
T 1g29_1 167 LSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMT---------MGDRIAVMNRGVLQ 219 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH---------HCSEEEEEETTEEE
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH---------hCCEEEEEeCCEEE
Confidence 999999855444 444432 4589999999754321 23567777765443
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.90 E-value=1.6e-23 Score=207.33 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=123.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ++|.|.++|.++.... .....+++++
T Consensus 29 ~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~------~~~r~ig~v~ 89 (372)
T 1v43_A 29 KLNLTIKD--GEFLVLLGPSGCGKTTTLRMIAGLEEP-----------TEGRIYFGDRDVTYLP------PKDRNISMVF 89 (372)
T ss_dssp EEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTSC------GGGGTEEEEE
T ss_pred eeEEEECC--CCEEEEECCCCChHHHHHHHHHcCCCC-----------CceEEEECCEECCCCC------hhhCcEEEEe
Confidence 66777777 789999999999999999999999865 8999999999875322 1235678888
Q ss_pred hhccccCChhhhHHHHhc-----CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMVLDA-----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~-----~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++...+...+.-. .......+++.+.|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 877666664444333221 1122334678899999999 68899999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||......+ ++.+.. ..++|++|||..... .....++++++.-+.
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~---------~~adri~vl~~G~i~ 221 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM---------TMGDRIAVMNRGQLL 221 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH---------HHCSEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH---------HhCCEEEEEECCEEE
Confidence 99999854444 444432 458999999975432 123567777765443
No 25
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.90 E-value=8.1e-24 Score=207.70 Aligned_cols=171 Identities=13% Similarity=0.126 Sum_probs=125.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ++|.|.++|.++.- .+ .....+++.+
T Consensus 18 ~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~~--~~----~~~r~ig~v~ 78 (348)
T 3d31_A 18 NLSLKVES--GEYFVILGPTGAGKTLFLELIAGFHVP-----------DSGRILLDGKDVTD--LS----PEKHDIAFVY 78 (348)
T ss_dssp EEEEEECT--TCEEEEECCCTHHHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SC----HHHHTCEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCccHHHHHHHHHcCCCC-----------CCcEEEECCEECCC--Cc----hhhCcEEEEe
Confidence 56777777 789999999999999999999999866 89999999988753 22 1235678888
Q ss_pred hhccccCCh---hhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKSS---DIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|....++.. +.+.+.......... +++.+.|+.+++ ..++++.+|||||+||++|| +++||||++
T Consensus 79 Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 79 QNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 877666653 444443321111112 678899999999 68899999999999999998 999999999
Q ss_pred CCHHHHHH---HHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 198 VDEKLCYQ---ILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 198 LD~~~v~~---ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
||...... +++.+.. ..++|++|||..... .....++++++.-+.
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~---------~~adri~vl~~G~i~ 207 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR---------IMADRIAVVMDGKLI 207 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHH---------HHCSEEEEESSSCEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH---------HhCCEEEEEECCEEE
Confidence 99985444 4444432 348999999975432 123567777765443
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=2.3e-23 Score=196.47 Aligned_cols=172 Identities=15% Similarity=0.139 Sum_probs=123.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|...| .+|.|.++|.++.- + + ......+++.+
T Consensus 33 ~vsl~i~~--Gei~~l~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~-~-~---~~~~~~i~~v~ 94 (256)
T 1vpl_A 33 GISFEIEE--GEIFGLIGPNGAGKTTTLRIISTLIKP-----------SSGIVTVFGKNVVE-E-P---HEVRKLISYLP 94 (256)
T ss_dssp EEEEEECT--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTT-C-H---HHHHTTEEEEC
T ss_pred eeEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCc-c-H---HHHhhcEEEEc
Confidence 66777777 789999999999999999999999765 89999999988642 1 1 11234567777
Q ss_pred hhccccCC---hhhhHHHHh--cCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d--~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....+.. .+.+.+... ........+.+.++|+.+|+ ..++++..||+||+||++|| +++||||
T Consensus 95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 174 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174 (256)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 76554444 233333221 11222234567889999999 67899999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 196 THVDEKLCYQ---ILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||+..... ++..+.. ..++|++|||+.... .+...++++++.-+
T Consensus 175 s~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~---------~~~d~v~~l~~G~i 224 (256)
T 1vpl_A 175 SGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVE---------FLCDRIALIHNGTI 224 (256)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHT---------TTCSEEEEEETTEE
T ss_pred cccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH---------HHCCEEEEEECCEE
Confidence 9999985544 4555443 348999999975422 12456777776543
No 27
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=1.2e-23 Score=206.96 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=127.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...+ ++|.|.++|.++.-.....+ ......+++.+
T Consensus 23 ~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~~~~~-~~~~r~ig~v~ 88 (353)
T 1oxx_K 23 NVNINIEN--GERFGILGPSGAGKTTFMRIIAGLDVP-----------STGELYFDDRLVASNGKLIV-PPEDRKIGMVF 88 (353)
T ss_dssp EEEEEECT--TCEEEEECSCHHHHHHHHHHHHTSSCC-----------SEEEEEETTEEEEETTEESS-CGGGSCEEEEE
T ss_pred ceEEEECC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECcccccccC-ChhhCCEEEEe
Confidence 56777777 789999999999999999999999866 89999999988753110000 11235678888
Q ss_pred hhccccCChhhhHHH---HhcC--CcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 132 QVIAVSKSSDIVLMV---LDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 132 q~~~~~~~~d~il~v---~d~~--~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
|....++...+...+ .... ......+++.+.|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 89 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~ 168 (353)
T 1oxx_K 89 QTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPF 168 (353)
T ss_dssp TTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 877666654443333 2221 223335678899999999 67899999999999999998 9999999
Q ss_pred CCCCHHH---HHHHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 196 THVDEKL---CYQILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 196 s~LD~~~---v~~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||... +.++++.+.. ..++|++|||...... ....++++++.-+.
T Consensus 169 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~---------~adri~vl~~G~i~ 220 (353)
T 1oxx_K 169 SNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA---------IADRVGVLVKGKLV 220 (353)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH---------HCSEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH---------hCCEEEEEECCEEE
Confidence 9999874 4445555532 4589999999754321 23567777765443
No 28
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.89 E-value=4.5e-23 Score=196.91 Aligned_cols=171 Identities=13% Similarity=0.070 Sum_probs=119.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeec--ccCccccccccccCccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGR 129 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~--~iD~~Gl~~~~~~~~~~ 129 (399)
+++|++.+ |++++|+||||||||||+++|+|...| .+|.|.++|.++. ..+.. ..+..+++
T Consensus 39 ~isl~i~~--Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~----~~~~~i~~ 101 (279)
T 2ihy_A 39 KISWQIAK--GDKWILYGLNGAGKTTLLNILNAYEPA-----------TSGTVNLFGKMPGKVGYSAE----TVRQHIGF 101 (279)
T ss_dssp EEEEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTBCCC---CCHH----HHHTTEEE
T ss_pred eeeEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccCCHH----HHcCcEEE
Confidence 67888887 789999999999999999999999765 8999999998764 22211 12345677
Q ss_pred chhhccccC-----ChhhhHHHHhc------CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce--------
Q 015822 130 GRQVIAVSK-----SSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 130 ~~q~~~~~~-----~~d~il~v~d~------~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
.+|...... -.+.+.+.... .......+++.+.|+.+|+ ..++++.+||+||+||++||
T Consensus 102 v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 181 (279)
T 2ihy_A 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQ 181 (279)
T ss_dssp ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 777543211 12333221100 0122334568889999999 67899999999999999998
Q ss_pred -eeeccCCCCCCHHHHHHHH---HHhhh-CCcE--EEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 189 -FNSTLPLTHVDEKLCYQIL---HEYKI-HNAE--VLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll---~~l~~-~~~~--v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
+++||||++||+.....++ +.+.. ..++ |++|||..... .....++++++.
T Consensus 182 lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~---------~~~d~v~~l~~G 239 (279)
T 2ihy_A 182 VLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEIT---------ANFSKILLLKDG 239 (279)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCC---------TTCCEEEEEETT
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHH---------HhCCEEEEEECC
Confidence 9999999999998655544 44432 3489 99999975421 124566777654
No 29
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.89 E-value=3.3e-23 Score=190.35 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=112.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+|||||||||||++|+|...+ .+|.|.++|.++. + ....+++.+
T Consensus 27 ~vsl~i~~--Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~--~-------~~~~i~~v~ 84 (214)
T 1sgw_A 27 RITMTIEK--GNVVNFHGPNGIGKTTLLKTISTYLKP-----------LKGEIIYNGVPIT--K-------VKGKIFFLP 84 (214)
T ss_dssp EEEEEEET--TCCEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGG--G-------GGGGEEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEhh--h-------hcCcEEEEe
Confidence 56787877 789999999999999999999999765 8999999998874 1 123456666
Q ss_pred hhccccCC---hhhhHHHHhcCC-cHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASK-SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~-~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts 196 (399)
|....+.. .+.+.+...... ... .+.+.+.|+.+|+ . ++++..||+||+||++|| +++||||+
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 65544443 333333222111 112 4567888999998 5 888999999999999998 99999999
Q ss_pred CCCHHH---HHHHHHHhh-hCCcEEEEcCCCCH
Q 015822 197 HVDEKL---CYQILHEYK-IHNAEVLFREDATV 225 (399)
Q Consensus 197 ~LD~~~---v~~ll~~l~-~~~~~v~vthd~~~ 225 (399)
+||+.. +.+++..+. ...+++++|||...
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREELS 195 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999874 445555554 33589999999765
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.89 E-value=8.8e-23 Score=191.77 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=119.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|...+ . |.+.++|.++.-.+... .+..+++.+
T Consensus 18 ~vsl~i~~--Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~-G~i~~~g~~~~~~~~~~----~~~~i~~v~ 79 (249)
T 2qi9_C 18 PLSGEVRA--GEILHLVGPNGAGKSTLLARMAGMTSG-----------K-GSIQFAGQPLEAWSATK----LALHRAYLS 79 (249)
T ss_dssp EEEEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------E-EEEEETTEEGGGSCHHH----HHHHEEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------C-eEEEECCEECCcCCHHH----HhceEEEEC
Confidence 67788887 789999999999999999999999765 8 99999998875433211 123356666
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce----------------eeecc
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----------------FNSTL 193 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia----------------li~DE 193 (399)
|....+....+...+.-........+.+.+.|+.+|+ .+++++..||+||+||++|| +++||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE 159 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence 6554444333333322111110014567889999999 67889999999999999987 67899
Q ss_pred CCCCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 194 PLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 194 pts~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
||++||+.....+ ++.+.. ..+++++|||..... .+...++++++.
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~---------~~~d~v~~l~~G 209 (249)
T 2qi9_C 160 PMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTL---------RHAHRAWLLKGG 209 (249)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH---------HHCSEEEEEETT
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH---------HhCCEEEEEECC
Confidence 9999999855544 444433 348999999976532 123556666654
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.89 E-value=9.9e-23 Score=193.30 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=119.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+||||||||||+++|+|...+ .+|.|.++|.++.-. .....+++.+
T Consensus 25 ~vsl~i~~--Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~I~~~g~~~~~~-------~~~~~i~~v~ 84 (266)
T 2yz2_A 25 NVSLVINE--GECLLVAGNTGSGKSTLLQIVAGLIEP-----------TSGDVLYDGERKKGY-------EIRRNIGIAF 84 (266)
T ss_dssp EEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCHH-------HHGGGEEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEECchH-------HhhhhEEEEe
Confidence 56777777 789999999999999999999999765 899999999876421 1123456666
Q ss_pred hhc-cccCC---hhhhHHHHhc-CCcHHHHHHHHHHHHHcCCc----ccccccccchhhHhhcCce---------eeecc
Q 015822 132 QVI-AVSKS---SDIVLMVLDA-SKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNSTL 193 (399)
Q Consensus 132 q~~-~~~~~---~d~il~v~d~-~~~~~~~~~i~~~L~~~gi~----~~~~~~~LS~g~kqr~~ia---------li~DE 193 (399)
|.. ..+.. .+.+.+.... .......+++.+.|+.+|+. .++++..||+||+||++|| +++||
T Consensus 85 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 164 (266)
T 2yz2_A 85 QYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164 (266)
T ss_dssp SSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred ccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 653 22222 2333332111 11112245678889999885 6788999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhhh-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 194 PLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 194 pts~LD~~~v~~l---l~~l~~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
||++||+.....+ ++.+.. ..++|++|||..... .....++++++.-+
T Consensus 165 Pts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~---------~~~d~v~~l~~G~i 216 (266)
T 2yz2_A 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI---------NHVDRVVVLEKGKK 216 (266)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTG---------GGCSEEEEEETTEE
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH---------HhCCEEEEEECCEE
Confidence 9999999855544 444433 348999999976533 12355667765443
No 32
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.88 E-value=1e-22 Score=191.48 Aligned_cols=174 Identities=18% Similarity=0.089 Sum_probs=115.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|... ..|.+|.|.++|.++...+... ....++++.+
T Consensus 21 ~vsl~i~~--Ge~~~l~G~nGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~~~~~~~~~---~~~~~i~~v~ 86 (250)
T 2d2e_A 21 GVNLVVPK--GEVHALMGPNGAGKSTLGKILAGDPE---------YTVERGEILLDGENILELSPDE---RARKGLFLAF 86 (250)
T ss_dssp EEEEEEET--TCEEEEECSTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEECTTSCHHH---HHHTTBCCCC
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCceEEEECCEECCCCCHHH---HHhCcEEEec
Confidence 67788887 78999999999999999999999721 1248999999998875432211 1123456666
Q ss_pred hhccccCC---hhhhHHHHh---cC--CcHHHHHHHHHHHHHcCC---cccccccc-cchhhHhhcCce---------ee
Q 015822 132 QVIAVSKS---SDIVLMVLD---AS--KSEGHRQILTKELEAVGL---RLNKRPPQ-IYFKKKKTGGIS---------FN 190 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d---~~--~~~~~~~~i~~~L~~~gi---~~~~~~~~-LS~g~kqr~~ia---------li 190 (399)
|....+.. .+.+.+... .. ......+.+.+.|+.+|+ ..++++.+ ||+||+||++|| ++
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll 166 (250)
T 2d2e_A 87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV 166 (250)
T ss_dssp CCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEE
T ss_pred cCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 65544443 233333221 11 112234567888999998 36788888 999999999998 99
Q ss_pred eccCCCCCCHHHHHHHHHHh---hh-CCcEEEEcCCCCHHHHHHHHhhcccc-ccEEEEEecC
Q 015822 191 STLPLTHVDEKLCYQILHEY---KI-HNAEVLFREDATVDDLIDVIEGNRKY-MKCVYVYNKI 248 (399)
Q Consensus 191 ~DEpts~LD~~~v~~ll~~l---~~-~~~~v~vthd~~~~~~~~~i~~~~~~-~p~iiv~NK~ 248 (399)
+||||++||+.....+++.+ .. ..++|++|||...... . ...++++++.
T Consensus 167 LDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~---------~~~d~v~~l~~G 220 (250)
T 2d2e_A 167 LDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNY---------IQPDKVHVMMDG 220 (250)
T ss_dssp EECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGT---------SCCSEEEEEETT
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hcCCEEEEEECC
Confidence 99999999998655555444 32 3489999999765331 2 2567777654
No 33
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.88 E-value=1.5e-22 Score=190.05 Aligned_cols=170 Identities=12% Similarity=0.065 Sum_probs=115.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+||||||||||+++|+|...+ .+|.|.++|.++.-.+... .+..+++.+
T Consensus 27 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~i~g~~~~~~~~~~----~~~~i~~v~ 89 (247)
T 2ff7_A 27 NINLSIKQ--GEVIGIVGRSGSGKSTLTKLIQRFYIP-----------ENGQVLIDGHDLALADPNW----LRRQVGVVL 89 (247)
T ss_dssp EEEEEEET--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCHHH----HHHHEEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHH----HHhcEEEEe
Confidence 67888887 789999999999999999999999765 8999999999875433211 123456666
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--c-----------ccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~-----------~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+. ..+...+.-.. .....+.+.+.++.+++ . +++++..||+||+||++|| +
T Consensus 90 Q~~~l~~-~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 90 QDNVLLN-RSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp SSCCCTT-SBHHHHHTTTC-TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred CCCcccc-ccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 6554443 23322222111 11112345566666665 2 2345689999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHH---HHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 190 NSTLPLTHVDEKLCYQIL---HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll---~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||||++||+.....++ ..+....++|++|||+..... ...++++++.-+
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~----------~d~v~~l~~G~i 221 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN----------ADRIIVMEKGKI 221 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT----------SSEEEEEETTEE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh----------CCEEEEEECCEE
Confidence 999999999998655544 444333489999999764321 355677775443
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.88 E-value=1.8e-22 Score=191.68 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=119.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+||||||||||+++|+|.... .|.+|.|.++|.++.-.+.... ...++++.+
T Consensus 38 ~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~l~Gl~~~---------~p~~G~I~~~g~~i~~~~~~~~---~~~~i~~v~ 103 (267)
T 2zu0_C 38 GLSLDVHP--GEVHAIMGPNGSGKSTLSATLAGREDY---------EVTGGTVEFKGKDLLALSPEDR---AGEGIFMAF 103 (267)
T ss_dssp EEEEEECT--TCEEEEECCTTSSHHHHHHHHHTCTTC---------EEEEEEEEETTEEGGGSCHHHH---HHHTEEEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCcCCHHHH---hhCCEEEEc
Confidence 67777777 789999999999999999999998421 2489999999988754332111 123456666
Q ss_pred hhccccCCh---hhhHHHHh------cC---CcHHHHHHHHHHHHHcCC---ccccccc-ccchhhHhhcCce-------
Q 015822 132 QVIAVSKSS---DIVLMVLD------AS---KSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------- 188 (399)
Q Consensus 132 q~~~~~~~~---d~il~v~d------~~---~~~~~~~~i~~~L~~~gi---~~~~~~~-~LS~g~kqr~~ia------- 188 (399)
|....+... +.+.+... .. ......+.+.+.|+.+|+ ..++++. .||+||+||++||
T Consensus 104 Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p 183 (267)
T 2zu0_C 104 QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP 183 (267)
T ss_dssp SSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCC
T ss_pred cCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCC
Confidence 655444432 22322211 11 112234568889999998 2467776 5999999999998
Q ss_pred --eeeccCCCCCCHHHHHHHHHHhh---h-CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 189 --FNSTLPLTHVDEKLCYQILHEYK---I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 189 --li~DEpts~LD~~~v~~ll~~l~---~-~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
+++||||++||+.....+++.+. . ..++|++|||...... .....++++++..
T Consensus 184 ~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~--------~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 184 ELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY--------IKPDYVHVLYQGR 242 (267)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT--------SCCSEEEEEETTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh--------hcCCEEEEEECCE
Confidence 99999999999987666665554 2 3489999999764331 0135667776543
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.88 E-value=1.4e-22 Score=189.78 Aligned_cols=172 Identities=16% Similarity=0.106 Sum_probs=118.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|...+ .+|.|.++|.++.-.+... .+..+++.+
T Consensus 20 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~ 82 (243)
T 1mv5_A 20 DISFEAQP--NSIIAFAGPSGGGKSTIFSLLERFYQP-----------TAGEITIDGQPIDNISLEN----WRSQIGFVS 82 (243)
T ss_dssp EEEEEECT--TEEEEEECCTTSSHHHHHHHHTTSSCC-----------SBSCEEETTEESTTTSCSC----CTTTCCEEC
T ss_pred EeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHH----HHhhEEEEc
Confidence 66777777 889999999999999999999999765 8999999999875443221 234466777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cc-----------cccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~-----------~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+. ..+...+.-........+.+.+.++.+++ .+ ++++..||+||+||++|| +
T Consensus 83 q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 83 QDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 7654443 23222222110111122346677777776 23 345679999999999998 9
Q ss_pred eeccCCCCCCHH---HHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEK---LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~---~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||+. .+.+++..+....+++++|||...... ...++++++.-+.
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~----------~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD----------ADKIYFIEKGQIT 216 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH----------CSEEEEEETTEEC
T ss_pred EEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh----------CCEEEEEECCEEE
Confidence 999999999987 566666666533489999999654321 3567777765443
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.87 E-value=3.7e-22 Score=187.95 Aligned_cols=145 Identities=22% Similarity=0.206 Sum_probs=104.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|...| .+|.+.+. ..+++.+
T Consensus 23 ~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~-----------------~~i~~v~ 72 (253)
T 2nq2_C 23 QLNFDLNK--GDILAVLGQNGCGKSTLLDLLLGIHRP-----------IQGKIEVY-----------------QSIGFVP 72 (253)
T ss_dssp EEEEEEET--TCEEEEECCSSSSHHHHHHHHTTSSCC-----------SEEEEEEC-----------------SCEEEEC
T ss_pred EEEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEe-----------------ccEEEEc
Confidence 67788887 789999999999999999999999765 78988731 1233334
Q ss_pred hhccccCC---hhhhHHHHhc------CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKS---SDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~------~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|....+.. .+.+.+.... .......+.+.+.|+.+|+ ..++++.+||+||+||++|| +++
T Consensus 73 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 152 (253)
T 2nq2_C 73 QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILL 152 (253)
T ss_dssp SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 43322222 2333222111 0122334668889999999 67889999999999999998 999
Q ss_pred ccCCCCCCHHHHHHH---HHHhhh--CCcEEEEcCCCCHH
Q 015822 192 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD 226 (399)
Q Consensus 192 DEpts~LD~~~v~~l---l~~l~~--~~~~v~vthd~~~~ 226 (399)
||||++||+.....+ +..+.. ..++|++|||....
T Consensus 153 DEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 192 (253)
T 2nq2_C 153 DEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192 (253)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999999999865544 444443 34899999997653
No 37
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=2.6e-22 Score=190.87 Aligned_cols=170 Identities=11% Similarity=0.060 Sum_probs=116.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|...| .+|.|.++|.++.-.+... .+..+++.+
T Consensus 37 ~vsl~i~~--Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~~----~~~~i~~v~ 99 (271)
T 2ixe_A 37 GLTFTLYP--GKVTALVGPNGSGKSTVAALLQNLYQP-----------TGGKVLLDGEPLVQYDHHY----LHTQVAAVG 99 (271)
T ss_dssp EEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGGGBCHHH----HHHHEEEEC
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEcccCCHHH----HhccEEEEe
Confidence 56777777 789999999999999999999999765 8999999999875433211 123356666
Q ss_pred hhccccCChhhhHHHHhc---CCc-HH-----HHHHHHHHHHHc--CC--cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDA---SKS-EG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~---~~~-~~-----~~~~i~~~L~~~--gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+...+.-. ... .. ....+.+.++.+ |+ .+++++..||+||+||++|| |
T Consensus 100 Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 178 (271)
T 2ixe_A 100 QEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178 (271)
T ss_dssp SSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 65544432 332222211 111 11 111234566766 55 56788999999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---h--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
++||||++||+.....+++.+. . ..++|++|||+.... ....++++++.-
T Consensus 179 lLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~----------~~d~v~~l~~G~ 233 (271)
T 2ixe_A 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE----------RAHHILFLKEGS 233 (271)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT----------TCSEEEEEETTE
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH----------hCCEEEEEECCE
Confidence 9999999999986555555443 2 348999999965422 135677777543
No 38
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.87 E-value=1.7e-22 Score=194.97 Aligned_cols=171 Identities=15% Similarity=0.124 Sum_probs=119.2
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+||||||||||+++|+|...+ .+|.|.++|.++.-++...+ +..+++++
T Consensus 72 ~isl~i~~--Ge~vaivG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~G~~i~~~~~~~~----r~~i~~v~ 134 (306)
T 3nh6_A 72 DVSFTVMP--GQTLALVGPSGAGKSTILRLLFRFYDI-----------SSGCIRIDGQDISQVTQASL----RSHIGVVP 134 (306)
T ss_dssp EEEEEECT--TCEEEEESSSCHHHHHHHHHHTTSSCC-----------SEEEEEETTEETTSBCHHHH----HHTEEEEC
T ss_pred eeeEEEcC--CCEEEEECCCCchHHHHHHHHHcCCCC-----------CCcEEEECCEEcccCCHHHH----hcceEEEe
Confidence 56677776 789999999999999999999999765 89999999999876553322 34577777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+...+.-+... ...+.+.+.++.+++ .+.+....|||||+||++|| |
T Consensus 135 Q~~~lf~~-Tv~eNi~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL 212 (306)
T 3nh6_A 135 QDTVLFND-TIADNIRYGRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII 212 (306)
T ss_dssp SSCCCCSE-EHHHHHHTTSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCccCcc-cHHHHHHhhccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 77655532 333233222111 112233444444433 34556689999999999999 9
Q ss_pred eeccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||......+++.+ ....++|+|||++.... ....|+|+++.-+.
T Consensus 213 lLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~----------~aD~i~vl~~G~iv 267 (306)
T 3nh6_A 213 LLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV----------NADQILVIKDGCIV 267 (306)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHH----------TCSEEEEEETTEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHH----------cCCEEEEEECCEEE
Confidence 999999999998655555444 34559999999976533 14678888876544
No 39
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=1.9e-21 Score=184.11 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=110.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcc-cc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~-~~ 130 (399)
+++|++. |++++|+|||||||||||++|+|.. | .+|.+.++|.++.-. .. ...++ +.
T Consensus 23 ~vsl~i~---Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-----------~~G~I~~~g~~~~~~------~~-~~~i~~~v 80 (263)
T 2pjz_A 23 NINLEVN---GEKVIILGPNGSGKTTLLRAISGLL-P-----------YSGNIFINGMEVRKI------RN-YIRYSTNL 80 (263)
T ss_dssp EEEEEEC---SSEEEEECCTTSSHHHHHHHHTTSS-C-----------CEEEEEETTEEGGGC------SC-CTTEEECC
T ss_pred eeeEEEC---CEEEEEECCCCCCHHHHHHHHhCCC-C-----------CCcEEEECCEECcch------HH-hhheEEEe
Confidence 4566666 4699999999999999999999997 7 899999999886421 11 34466 66
Q ss_pred hhhccc-cCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCc---ccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 131 RQVIAV-SKSSDIVLMVLDASKSEGHRQILTKELEAVGLR---LNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 131 ~q~~~~-~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~---~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
+|.... ..-.+.+.+...... ...+.+.+.|+.+++. +++++.+||+||+||+++| +++||||++
T Consensus 81 ~Q~~~l~~tv~enl~~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 81 PEAYEIGVTVNDIVYLYEELKG--LDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp GGGSCTTSBHHHHHHHHHHHTC--CCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred CCCCccCCcHHHHHHHhhhhcc--hHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 665443 111233333221111 1235678889999884 6889999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhh-hCCcEEEEcCCCCH
Q 015822 198 VDEKLCYQILHEYK-IHNAEVLFREDATV 225 (399)
Q Consensus 198 LD~~~v~~ll~~l~-~~~~~v~vthd~~~ 225 (399)
||+.....+++.+. +..+++++|||...
T Consensus 159 LD~~~~~~l~~~L~~~~~tviivtHd~~~ 187 (263)
T 2pjz_A 159 VDAARRHVISRYIKEYGKEGILVTHELDM 187 (263)
T ss_dssp CCHHHHHHHHHHHHHSCSEEEEEESCGGG
T ss_pred cCHHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 99997777766665 22399999999754
No 40
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.85 E-value=3.3e-21 Score=182.19 Aligned_cols=168 Identities=14% Similarity=0.132 Sum_probs=113.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|... | .|.|.++|.++.-.+.. ..+..+++.+
T Consensus 38 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----------~-~G~I~i~g~~i~~~~~~----~~~~~i~~v~ 99 (260)
T 2ghi_A 38 SINFFIPS--GTTCALVGHTGSGKSTIAKLLYRFYD-----------A-EGDIKIGGKNVNKYNRN----SIRSIIGIVP 99 (260)
T ss_dssp EEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSC-----------C-EEEEEETTEEGGGBCHH----HHHTTEEEEC
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHhccCC-----------C-CeEEEECCEEhhhcCHH----HHhccEEEEc
Confidence 56777777 78999999999999999999999853 2 69999999887543321 1234466777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--c-----------ccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~-----------~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+. ..+...+.-.... ...+.+.+.++.+++ . +++++..||+||+||++|| +
T Consensus 100 Q~~~l~~-~tv~enl~~~~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 177 (260)
T 2ghi_A 100 QDTILFN-ETIKYNILYGKLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIV 177 (260)
T ss_dssp SSCCCCS-EEHHHHHHTTCTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CCCcccc-cCHHHHHhccCCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 7654443 2332222211111 112345556666654 1 3456789999999999998 9
Q ss_pred eeccCCCCCCHHHHHHH---HHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 190 NSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 190 i~DEpts~LD~~~v~~l---l~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
++||||++||+.....+ +..+....++|++|||..... ....++++++.-
T Consensus 178 lLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~----------~~d~i~~l~~G~ 230 (260)
T 2ghi_A 178 IFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS----------SAESIILLNKGK 230 (260)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST----------TCSEEEEEETTE
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH----------hCCEEEEEECCE
Confidence 99999999999865544 444433458999999976432 135677777543
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.2e-21 Score=194.97 Aligned_cols=169 Identities=18% Similarity=0.149 Sum_probs=124.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|||||||||||++|+|... .+|.|.++|.++.-++... .+..+++++
T Consensus 39 ~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~------------~~G~I~i~G~~i~~~~~~~----~rr~ig~v~ 100 (390)
T 3gd7_A 39 NISFSISP--GQRVGLLGRTGSGKSTLLSAFLRLLN------------TEGEIQIDGVSWDSITLEQ----WRKAFGVIP 100 (390)
T ss_dssp EEEEEECT--TCEEEEEESTTSSHHHHHHHHHTCSE------------EEEEEEESSCBTTSSCHHH----HHHTEEEES
T ss_pred ceeEEEcC--CCEEEEECCCCChHHHHHHHHhCCCC------------CCeEEEECCEECCcCChHH----HhCCEEEEc
Confidence 67777777 78999999999999999999999852 5799999998875443221 234577888
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccc-----------cchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQ-----------IYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~-----------LS~g~kqr~~ia---------l 189 (399)
|....+. ..+...+. ... ....+.+.+.|+.+++ .+++++.. |||||+||++|| |
T Consensus 101 Q~~~lf~-~tv~enl~-~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lL 177 (390)
T 3gd7_A 101 QKVFIFS-GTFRKNLD-PNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 177 (390)
T ss_dssp CCCCCCS-EEHHHHHC-TTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcccCc-cCHHHHhh-hcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8766554 22222221 111 1123567788999998 67888877 999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||......+...+. ...+++++|||..... ....++|+++.-+.
T Consensus 178 LLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~----------~aDri~vl~~G~i~ 232 (390)
T 3gd7_A 178 LLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML----------ECDQFLVIEENKVR 232 (390)
T ss_dssp EEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT----------TCSEEEEEETTEEE
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH----------hCCEEEEEECCEEE
Confidence 9999999999986666666554 2348999999964322 24778899887654
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=175.26 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=102.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+||||||||||+++|+|...| .+|.|.++|. + ++.+
T Consensus 23 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~-i----------------~~v~ 72 (237)
T 2cbz_A 23 GITFSIPE--GALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVAIKGS-V----------------AYVP 72 (237)
T ss_dssp EEEEEECT--TCEEEEECSTTSSHHHHHHHHTTCSEE-----------EEEEEEECSC-E----------------EEEC
T ss_pred eeEEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCE-E----------------EEEc
Confidence 67788877 789999999999999999999999754 8999999882 2 1222
Q ss_pred hhccccCChhhhHHHHhcCC-cHHHHHHHHH---HHHHcCC-------cccccccccchhhHhhcCce---------eee
Q 015822 132 QVIAVSKSSDIVLMVLDASK-SEGHRQILTK---ELEAVGL-------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~-~~~~~~~i~~---~L~~~gi-------~~~~~~~~LS~g~kqr~~ia---------li~ 191 (399)
|... +....+...+.-... .......+.+ +++.++. .+++++..||+||+||++|| +++
T Consensus 73 Q~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 151 (237)
T 2cbz_A 73 QQAW-IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLF 151 (237)
T ss_dssp SSCC-CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCc-CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2211 112111111111100 1111111111 1222222 24678899999999999998 999
Q ss_pred ccCCCCCCHHHHHHHHHHhh------hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 192 TLPLTHVDEKLCYQILHEYK------IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 192 DEpts~LD~~~v~~ll~~l~------~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
||||++||+.....+++.+. ...++|++|||...... ...++++++.
T Consensus 152 DEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~----------~d~v~~l~~G 204 (237)
T 2cbz_A 152 DDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ----------VDVIIVMSGG 204 (237)
T ss_dssp ESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGG----------SSEEEEEETT
T ss_pred eCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHh----------CCEEEEEeCC
Confidence 99999999998887777762 23489999999865332 3456666654
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.83 E-value=2.4e-20 Score=173.03 Aligned_cols=155 Identities=13% Similarity=0.133 Sum_probs=101.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|...| .+|.|.++|. + ++.+
T Consensus 26 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~-i----------------~~v~ 75 (229)
T 2pze_A 26 DINFKIER--GQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-I----------------SFCS 75 (229)
T ss_dssp EEEEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEECSC-E----------------EEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCcC-----------CccEEEECCE-E----------------EEEe
Confidence 67888887 789999999999999999999999765 8999999872 2 2222
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+...+.-..... .....+.++.+++ .+.+++..||+||+||+++| +
T Consensus 76 q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 76 QFSWIMPG-TIKENIIFGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp SSCCCCSB-CHHHHHHTTSCCC--HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred cCCcccCC-CHHHHhhccCCcC--hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 32222221 2221221111100 0112223333332 12345689999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHh-h-h--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEY-K-I--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l-~-~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
++||||++||+.....+++.+ . . ..+++++|||...... ...++++++.-
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~----------~d~v~~l~~G~ 206 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK----------ADKILILHEGS 206 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH----------CSEEEEEETTE
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh----------CCEEEEEECCE
Confidence 999999999999888887753 2 2 3489999999643221 35566776543
No 44
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.83 E-value=3.3e-22 Score=200.70 Aligned_cols=243 Identities=25% Similarity=0.337 Sum_probs=160.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC-EeecccCccccccccccCcccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
+++|++.. ++.|+|||+||||||||||+|++..+.+++|||||+.|..|.+.+++ ..+.+.|+||+...+..+.++.
T Consensus 149 ~i~lelk~--g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~ 226 (416)
T 1udx_A 149 RLRLELML--IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLG 226 (416)
T ss_dssp EEEEEECC--SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSC
T ss_pred eeeeEEcC--CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhh
Confidence 56666766 77999999999999999999999988899999999999999999986 7889999999987666665665
Q ss_pred hhhccccCChhhhHHHHhcC-CcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHH
Q 015822 131 RQVIAVSKSSDIVLMVLDAS-KSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHE 209 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~-~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~ 209 (399)
.+++..+..++.+++++|.+ .+. ..||.+++++..++
T Consensus 227 ~~fl~~~era~~lL~vvDls~~~~---------------------~~ls~g~~el~~la--------------------- 264 (416)
T 1udx_A 227 LEFLRHIARTRVLLYVLDAADEPL---------------------KTLETLRKEVGAYD--------------------- 264 (416)
T ss_dssp HHHHHHHTSSSEEEEEEETTSCHH---------------------HHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHhhhEEeCCccCCH---------------------HHHHHHHHHHHHHh---------------------
Confidence 56655567788888888875 211 22333433332211
Q ss_pred hhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH----c-CCCEEEecchhccchHHHHHHHH
Q 015822 210 YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA----R-QPNSVVISCNLKLNLDRLLARMW 284 (399)
Q Consensus 210 l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~----~-~~~~i~vSa~~~~gl~~L~~~i~ 284 (399)
. ....+|.++|+||+|+.....++.+. + ...++++||+++.|+++|++.+.
T Consensus 265 --------------------~----aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 265 --------------------P----ALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp --------------------H----HHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred --------------------H----HhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 0 01136999999999998654333332 1 13589999999999999999998
Q ss_pred HHhCceEEEeCCCC-CCCCCCCcEEeecC------CCCCCHHHHHHHHHHHHhhcc-ceeEEeccCCccCCcccCCCcee
Q 015822 285 EEMGLVRVYTKPQG-QQPDFTEPVVLSVD------RGGCTVEDFCNHIHRSLVKDV-KYVLVWGTSARHYPQHCGLGHVL 356 (399)
Q Consensus 285 ~~l~~i~~~~~~~~-~~p~~~~~~~v~~~------r~g~tv~~~a~~ih~~l~~~f-~~a~~wg~s~~~~~~rvg~~~~l 356 (399)
+.+...+.+..... -.++..+++.+.+. ..|..+++++...+-+-.+.+ .++..|....-.... +++-+
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~l---~~~g~ 397 (416)
T 1udx_A 321 ALVRSTPPPEMPKPVPRKEVQAGVEVVPVAEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGVEAAL---RAKGV 397 (416)
T ss_dssp HHHHTSCCCCCCCCCC----CCCCEEEEEETTEEEEECHHHHHHHTTEEECTGGGHHHHHHHHHHTTHHHHH---HTTTC
T ss_pred HHHHhcccccccccccccccCCCcEEEEcCCCeEEEeChHHHHHHHhcCCCCHHHHHHHHHHHHHCCHHHHH---HHcCC
Confidence 88765433221000 00111123444210 126667776666555555554 344555432111111 56788
Q ss_pred cCCCeEEEE
Q 015822 357 QDEDVVQIV 365 (399)
Q Consensus 357 ~d~dvv~i~ 365 (399)
++||.|.|.
T Consensus 398 ~~gd~v~i~ 406 (416)
T 1udx_A 398 RAGDLVRIG 406 (416)
T ss_dssp CTTCEEEET
T ss_pred CCCCEEEEe
Confidence 999999984
No 45
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.83 E-value=1.9e-20 Score=196.24 Aligned_cols=172 Identities=14% Similarity=0.124 Sum_probs=119.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.++|+||||||||||+++|+|...| .+|.+.++|.++.-.+... .+..+++.+
T Consensus 361 ~i~l~i~~--G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~ 423 (582)
T 3b5x_A 361 HVSFSIPQ--GKTVALVGRSGSGKSTIANLFTRFYDV-----------DSGSICLDGHDVRDYKLTN----LRRHFALVS 423 (582)
T ss_pred cceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEhhhCCHHH----HhcCeEEEc
Confidence 67777777 789999999999999999999999765 8999999999886544322 234567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--c-----------ccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~-----------~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+...+.-+..+....+.+.+.++.+++ . +.++..+|||||+||+++| +
T Consensus 424 Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~il 502 (582)
T 3b5x_A 424 QNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL 502 (582)
T ss_pred CCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 76655432 2222222111011223456667777665 2 2334579999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||......+.+.+. ...+++++||+...... .+.++++++.-+.
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 503 ILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ----------ADEILVVDEGEII 557 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh----------CCEEEEEECCEEE
Confidence 9999999999986555555443 34589999999764332 3567777765443
No 46
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.82 E-value=1.9e-20 Score=196.25 Aligned_cols=171 Identities=12% Similarity=0.077 Sum_probs=118.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+||||||||||+++|+|...| .+|.+.++|.++.-++... .+..+++.+
T Consensus 361 ~v~~~i~~--G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~ 423 (582)
T 3b60_A 361 NINLKIPA--GKTVALVGRSGSGKSTIASLITRFYDI-----------DEGHILMDGHDLREYTLAS----LRNQVALVS 423 (582)
T ss_dssp EEEEEECT--TCEEEEEECTTSSHHHHHHHHTTTTCC-----------SEEEEEETTEETTTBCHHH----HHHTEEEEC
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhhccCC-----------CCCeEEECCEEccccCHHH----HHhhCeEEc
Confidence 45666666 789999999999999999999999765 8999999999886544322 234567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+...+.-+..+....+.+.+.++.+++ .+.++..+|||||+||+++| +
T Consensus 424 Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~il 502 (582)
T 3b60_A 424 QNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_dssp SSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 76655543 3332222211011123446666666665 23345689999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl 250 (399)
++||||++||......+.+.+ ....+++++||+..... ..+.++++++.-+
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~----------~~d~i~~l~~G~i 556 (582)
T 3b60_A 503 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE----------QADEIVVVEDGII 556 (582)
T ss_dssp EEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT----------TCSEEEEEETTEE
T ss_pred EEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH----------hCCEEEEEECCEE
Confidence 999999999998655554444 33458999999976432 2466788876543
No 47
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.82 E-value=1.4e-20 Score=186.15 Aligned_cols=196 Identities=24% Similarity=0.257 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCCCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEE
Q 015822 27 LGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY 106 (399)
Q Consensus 27 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~ 106 (399)
.+.++.++.++++++......+... .....+.+-.+|+|+|+||||||||+|+|+|....++++||||+|+..|.+.+
T Consensus 146 ~~~~~~~i~~l~~~l~~~~~~r~~~--r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~ 223 (364)
T 2qtf_A 146 IKFYKRRINKLMKELESIKIFKEKS--IESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI 223 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------------CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE
Confidence 4466777777776654432221100 00111222235999999999999999999999888899999999999999999
Q ss_pred CCEeecccCccccccccccC-cccchhhccccCChhhhHHHHhcCCcHH-HHHHHHHHHHHcCCcccccccccchhhHhh
Q 015822 107 NDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSSDIVLMVLDASKSEG-HRQILTKELEAVGLRLNKRPPQIYFKKKKT 184 (399)
Q Consensus 107 ~g~~i~~iD~~Gl~~~~~~~-~~~~~q~~~~~~~~d~il~v~d~~~~~~-~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr 184 (399)
+|.++.++||+|+....... +......+..+..+|++++++|++.+.. ..+.+
T Consensus 224 ~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~------------------------- 278 (364)
T 2qtf_A 224 NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETL------------------------- 278 (364)
T ss_dssp TTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHH-------------------------
T ss_pred CCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHH-------------------------
Confidence 99999999999975432111 1111223345678899999999876541 11111
Q ss_pred cCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhH---HH---
Q 015822 185 GGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV---DK--- 258 (399)
Q Consensus 185 ~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~---~~--- 258 (399)
..+.++++.+. ...+|+++|.||+|+.+.... ..
T Consensus 279 ----------------~~~~~~L~~l~------------------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~ 318 (364)
T 2qtf_A 279 ----------------QSSFEILREIG------------------------VSGKPILVTLNKIDKINGDLYKKLDLVEK 318 (364)
T ss_dssp ----------------HHHHHHHHHHT------------------------CCSCCEEEEEECGGGCCSCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHhC------------------------cCCCCEEEEEECCCCCCchHHHHHHHHHH
Confidence 11122222221 113699999999999753311 11
Q ss_pred H-HcC----CCEEEecchhccchHHHHHHHHHHhCc
Q 015822 259 L-ARQ----PNSVVISCNLKLNLDRLLARMWEEMGL 289 (399)
Q Consensus 259 l-~~~----~~~i~vSa~~~~gl~~L~~~i~~~l~~ 289 (399)
+ ... ++++++||+++.|+++|.+.|.+.+..
T Consensus 319 l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 319 LSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 1 111 247899999999999999999887643
No 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.81 E-value=3.2e-20 Score=194.35 Aligned_cols=171 Identities=13% Similarity=0.100 Sum_probs=119.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+||||||||||+++|+|...| .+|.+.++|.++.-++...+ +..+++.+
T Consensus 359 ~isl~i~~--G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~~----r~~i~~v~ 421 (578)
T 4a82_A 359 DINLSIEK--GETVAFVGMSGGGKSTLINLIPRFYDV-----------TSGQILIDGHNIKDFLTGSL----RNQIGLVQ 421 (578)
T ss_dssp EEEEEECT--TCEEEEECSTTSSHHHHHTTTTTSSCC-----------SEEEEEETTEEGGGSCHHHH----HHTEEEEC
T ss_pred eeEEEECC--CCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHHH----hhheEEEe
Confidence 55666666 789999999999999999999999765 89999999999876654322 34567777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+...+.-+... ...+.+.+.++..++ .+..+..+|||||+||+++| +
T Consensus 422 Q~~~l~~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~il 499 (578)
T 4a82_A 422 QDNILFSD-TVKENILLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 499 (578)
T ss_dssp SSCCCCSS-BHHHHHGGGCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred CCCccCcc-cHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 76655543 333333222111 112334455555443 23445579999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||+.....+.+ .+....|++++||++.... ..+.++++++.-+.
T Consensus 500 llDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~----------~~d~i~~l~~G~i~ 554 (578)
T 4a82_A 500 ILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT----------HADKIVVIENGHIV 554 (578)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT----------TCSEEEEEETTEEE
T ss_pred EEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------cCCEEEEEECCEEE
Confidence 9999999999985544444 4444459999999986532 24678888876544
No 49
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.81 E-value=4.8e-20 Score=193.63 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=116.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+||||||||||+++|+|...| .+|.+.++|.++.-++... .+..+++.+
T Consensus 362 ~isl~i~~--G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~i~~~~~~~----~~~~i~~v~ 424 (595)
T 2yl4_A 362 DFSLSIPS--GSVTALVGPSGSGKSTVLSLLLRLYDP-----------ASGTISLDGHDIRQLNPVW----LRSKIGTVS 424 (595)
T ss_dssp EEEEEECT--TCEEEEECCTTSSSTHHHHHHTTSSCC-----------SEEEEEETTEETTTBCHHH----HHHSEEEEC
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCcEEEECCEEhhhCCHHH----HHhceEEEc
Confidence 45566665 889999999999999999999999765 8999999999886544322 234567777
Q ss_pred hhccccCChhhhHHHHhcCCc--HHHHHHHHHHHHHcCC--c-----------ccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKSSDIVLMVLDASKS--EGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~--~~~~~~i~~~L~~~gi--~-----------~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .+...+.-+... ....+.+.+.++.+++ . +..+..+|||||+||+++|
T Consensus 425 Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~ 503 (595)
T 2yl4_A 425 QEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 503 (595)
T ss_dssp SSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCS
T ss_pred cCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 76655543 333233211111 1223456777777765 1 2334489999999999998
Q ss_pred -eeeccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~ 248 (399)
+++||||++||.+....+.+.+ ....+++++||+...... .+.++++++.
T Consensus 504 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G 557 (595)
T 2yl4_A 504 ILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN----------ANMVAVLDQG 557 (595)
T ss_dssp EEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH----------SSEEEEEETT
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc----------CCEEEEEECC
Confidence 9999999999998655554444 344599999999754332 3556777654
No 50
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=3.9e-20 Score=194.41 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=117.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+||||||||||+++|+|...| .+|.+.++|.++.-++...+ +..+++.+
T Consensus 373 ~isl~i~~--G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~i~~~~~~~~----r~~i~~v~ 435 (598)
T 3qf4_B 373 DITFHIKP--GQKVALVGPTGSGKTTIVNLLMRFYDV-----------DRGQILVDGIDIRKIKRSSL----RSSIGIVL 435 (598)
T ss_dssp SEEEECCT--TCEEEEECCTTSSTTHHHHHHTTSSCC-----------SEEEEEETTEEGGGSCHHHH----HHHEEEEC
T ss_pred ceEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCcCC-----------CCeEEEECCEEhhhCCHHHH----HhceEEEe
Confidence 56666666 789999999999999999999999765 89999999999876654322 23466777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+...+.-+.. ....+.+.+.++.+++ .+.....+|||||+||++|| +
T Consensus 436 Q~~~lf~~-tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~il 513 (598)
T 3qf4_B 436 QDTILFST-TVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKIL 513 (598)
T ss_dssp TTCCCCSS-BHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCccccc-cHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 76655532 23222221111 1111234444444444 22233478999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHH---HhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~---~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||......+.+ .+....|++++||++..... .+.++++++.-+.
T Consensus 514 llDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~----------~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 514 ILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN----------ADLIIVLRDGEIV 568 (598)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH----------CSEEEEECSSSEE
T ss_pred EEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc----------CCEEEEEECCEEE
Confidence 9999999999985554444 44344599999999886442 4678888876544
No 51
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.80 E-value=4e-20 Score=177.34 Aligned_cols=154 Identities=13% Similarity=0.138 Sum_probs=99.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+||||||||||+++|+|...+ .+|.|.++|. + ++.+
T Consensus 56 ~isl~i~~--Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~-i----------------~~v~ 105 (290)
T 2bbs_A 56 DINFKIER--GQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-I----------------SFCS 105 (290)
T ss_dssp EEEEEECT--TCEEEEEESTTSSHHHHHHHHTTSSCE-----------EEEEEECCSC-E----------------EEEC
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCE-E----------------EEEe
Confidence 67788877 789999999999999999999999765 8999999872 1 2223
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+...+. ..... ...+...++.+++ .+.+++..||+||+||++|| +
T Consensus 106 Q~~~l~~~-tv~enl~-~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 181 (290)
T 2bbs_A 106 QNSWIMPG-TIKENII-GVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 181 (290)
T ss_dssp SSCCCCSS-BHHHHHH-TTCCC--HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE
T ss_pred CCCccCcc-cHHHHhh-Ccccc--hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE
Confidence 32222221 2222222 11100 0112223333333 12334579999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHh-h-h--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEY-K-I--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l-~-~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
++||||++||+.....+++.+ . . ..+++++|||...... ...++++++..
T Consensus 182 lLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~----------~d~i~~l~~G~ 235 (290)
T 2bbs_A 182 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK----------ADKILILHEGS 235 (290)
T ss_dssp EEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH----------SSEEEEEETTE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc----------CCEEEEEECCe
Confidence 999999999999888887753 2 2 3489999999643321 34566666543
No 52
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.80 E-value=6.8e-21 Score=186.79 Aligned_cols=161 Identities=29% Similarity=0.435 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC-EeecccCccccccccccCcccchhhccccCChh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g-~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
..|+|+|.||||||||+|+|++....+++|||||++|+.|.+.+++ ..+.++||||+...++.+.++..+++..++.+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 4799999999999999999999888889999999999999999986 889999999998877777777788877778899
Q ss_pred hhHHHHhcCC-----cHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcE
Q 015822 142 IVLMVLDASK-----SEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (399)
Q Consensus 142 ~il~v~d~~~-----~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~ 216 (399)
++++|+|++. +..+...+..+|..+.
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~------------------------------------------------- 269 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYN------------------------------------------------- 269 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSC-------------------------------------------------
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhh-------------------------------------------------
Confidence 9999999865 2222222222222110
Q ss_pred EEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-hHHHHHc-C---CCEEEecchhccchHHHHHHHHHHhCc
Q 015822 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLAR-Q---PNSVVISCNLKLNLDRLLARMWEEMGL 289 (399)
Q Consensus 217 v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-~~~~l~~-~---~~~i~vSa~~~~gl~~L~~~i~~~l~~ 289 (399)
.....+|.++|+||+|+.... ..+.+.+ + ..++++||+++.|+++|++.|.+.+..
T Consensus 270 -----------------~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 270 -----------------LRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp -----------------SSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred -----------------hhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 001247999999999998653 2444432 2 358999999999999999999998864
No 53
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=7.2e-20 Score=191.93 Aligned_cols=171 Identities=16% Similarity=0.138 Sum_probs=118.1
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+.+||+||||||||||+++|+|...+ .+|.+.++|.++.-++...+ +..+++.+
T Consensus 361 ~isl~i~~--Ge~~~ivG~sGsGKSTll~~l~g~~~~-----------~~G~i~i~g~~i~~~~~~~~----r~~i~~v~ 423 (587)
T 3qf4_A 361 GVNFSVKP--GSLVAVLGETGSGKSTLMNLIPRLIDP-----------ERGRVEVDELDVRTVKLKDL----RGHISAVP 423 (587)
T ss_dssp EEEEEECT--TCEEEEECSSSSSHHHHHHTTTTSSCC-----------SEEEEEESSSBGGGBCHHHH----HHHEEEEC
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCccC-----------CCcEEEECCEEcccCCHHHH----HhheEEEC
Confidence 55666666 789999999999999999999999765 89999999998876654332 23466777
Q ss_pred hhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHc-----------CC--cccccccccchhhHhhcCce---------e
Q 015822 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS---------F 189 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~-----------gi--~~~~~~~~LS~g~kqr~~ia---------l 189 (399)
|....+.. .+...+.-.... ...+.+.+.++.. |+ .+.++..+|||||+||+++| +
T Consensus 424 Q~~~lf~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~il 501 (587)
T 3qf4_A 424 QETVLFSG-TIKENLKWGRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL 501 (587)
T ss_dssp SSCCCCSE-EHHHHHTTTCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCcCcCc-cHHHHHhccCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 76655532 222222211111 1112233333333 33 45677889999999999998 9
Q ss_pred eeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 190 i~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
++||||++||......+.+.+. ...|+++++|++.... ..+.++++++.-+.
T Consensus 502 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~----------~~d~i~vl~~G~i~ 556 (587)
T 3qf4_A 502 ILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL----------LADKILVLHEGKVA 556 (587)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT----------TSSEEEEEETTEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH----------hCCEEEEEECCEEE
Confidence 9999999999986555555543 3459999999976432 24678888876544
No 54
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.79 E-value=2e-19 Score=183.74 Aligned_cols=191 Identities=21% Similarity=0.176 Sum_probs=110.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCccc-chhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~-~~q~~~~~~~ 139 (399)
+.+|+|+|+||||||||+|+|++.. ..++++|+||+++....+.++|.++.++||||+.......... .......++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhccc
Confidence 4689999999999999999999986 5689999999999999999999999999999986522111011 1223445688
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|++.+....+ +. ....+++.+
T Consensus 313 aD~vl~VvD~s~~~s~~~-~~-----------------------------------------~~~~~l~~l--------- 341 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDE-LT-----------------------------------------EIRELKAAH--------- 341 (476)
T ss_dssp CSEEEEEEETTTCSSGGG-HH-----------------------------------------HHHHHHHHC---------
T ss_pred CCEEEEEEECCCCcchhh-hH-----------------------------------------HHHHHHHhc---------
Confidence 999999999876432110 00 011111111
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHH--HHHc--CCCEEEecchhccchHHHHHHHHHHhC-ceEEEe
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD--KLAR--QPNSVVISCNLKLNLDRLLARMWEEMG-LVRVYT 294 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~--~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~-~i~~~~ 294 (399)
..+|+++|+||+|+....... .+.+ ..+++++||+++.|+++|.+.|.+.+. ..
T Consensus 342 -----------------~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~~~~---- 400 (476)
T 3gee_A 342 -----------------PAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVKNLD---- 400 (476)
T ss_dssp -----------------TTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHHSSC----
T ss_pred -----------------CCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHhhcc----
Confidence 136999999999998654332 2333 467999999999999999999988774 21
Q ss_pred CCCCCCCCCCCcEEeecCCCCCCHHHHHHHHHHHHh
Q 015822 295 KPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLV 330 (399)
Q Consensus 295 ~~~~~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~ 330 (399)
.+....++ +.+.||...++.+...+...+.
T Consensus 401 -----~~~~~~~~-~~~~R~~~~l~~a~~~L~~~~~ 430 (476)
T 3gee_A 401 -----KLHEASVL-VTSLRHYEALRNASDALQNALE 430 (476)
T ss_dssp -----CCCTTSCC-CCSHHHHHHHHHHHHHHHHHHT
T ss_pred -----CCCCcccc-cccHHHHHHHHHHHHHHHHHHH
Confidence 11223343 4454777777777777766543
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.79 E-value=1.4e-19 Score=187.51 Aligned_cols=150 Identities=12% Similarity=0.148 Sum_probs=102.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCC-
Q 015822 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS- 139 (399)
Q Consensus 61 ~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~- 139 (399)
.|+++||+|+||||||||+++|+|...+ .+|.+.+++..+.++. |.......
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~i~~~~----------------q~~~~~~~~ 345 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITA-----------DEGSVTPEKQILSYKP----------------QRIFPNYDG 345 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SBCCEESSCCCEEEEC----------------SSCCCCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCeeeEeec----------------hhcccccCC
Confidence 3789999999999999999999999866 7899887765543321 11100001
Q ss_pred --hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCHHHHH--
Q 015822 140 --SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCY-- 204 (399)
Q Consensus 140 --~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~-- 204 (399)
.+.+........ ......+.+.|+.+++ ..++++..|||||+||++|| |++||||++||.....
T Consensus 346 tv~~~l~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i 424 (538)
T 3ozx_A 346 TVQQYLENASKDAL-STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424 (538)
T ss_dssp BHHHHHHHHCSSTT-CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred CHHHHHHHhhhhcc-chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 112221111110 0112346777888888 67899999999999999998 9999999999998554
Q ss_pred -HHHHHhhh--CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEec
Q 015822 205 -QILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 247 (399)
Q Consensus 205 -~ll~~l~~--~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK 247 (399)
++++.+.. ..++|++|||+..... +...++|++.
T Consensus 425 ~~~l~~l~~~~g~tvi~vsHdl~~~~~---------~aDri~vl~~ 461 (538)
T 3ozx_A 425 AKAIKRVTRERKAVTFIIDHDLSIHDY---------IADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHH---------HCSEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEeC
Confidence 44555532 3489999999765431 2456777764
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.78 E-value=2.2e-19 Score=188.33 Aligned_cols=138 Identities=12% Similarity=0.188 Sum_probs=93.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCCh
Q 015822 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 61 ~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.|+++||+||||||||||+++|+|...+ ..|.+.+. . .+++.+|........
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~-~----------------~i~~v~Q~~~~~~~~ 432 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKVEWD-L----------------TVAYKPQYIKAEYEG 432 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBSCCCCC-C----------------CEEEECSSCCCCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEEe-e----------------EEEEEecCccCCCCC
Confidence 3789999999999999999999999765 66766541 1 122333332211111
Q ss_pred hhhHHHHhc-CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHH--
Q 015822 141 DIVLMVLDA-SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI-- 206 (399)
Q Consensus 141 d~il~v~d~-~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~l-- 206 (399)
.+..++... .......+.+.+.|+.+++ ..++++..|||||+||+.|| |++||||++||......+
T Consensus 433 tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~ 512 (607)
T 3bk7_A 433 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 512 (607)
T ss_dssp BHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHH
Confidence 111111110 0001123457788999998 67899999999999999998 999999999999865544
Q ss_pred -HHHhh--hCCcEEEEcCCCCHH
Q 015822 207 -LHEYK--IHNAEVLFREDATVD 226 (399)
Q Consensus 207 -l~~l~--~~~~~v~vthd~~~~ 226 (399)
++.+. ...++|++|||....
T Consensus 513 ~l~~l~~~~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 513 AIRHLMEKNEKTALVVEHDVLMI 535 (607)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHH
Confidence 44443 245999999997653
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.78 E-value=1.7e-19 Score=187.04 Aligned_cols=138 Identities=12% Similarity=0.192 Sum_probs=93.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCCh
Q 015822 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 61 ~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.|+++||+|+||||||||+++|+|...+ ..|.|.+. .. +++.+|........
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~~-~~----------------i~~v~Q~~~~~~~~ 362 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKIEWD-LT----------------VAYKPQYIKADYEG 362 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBCCCCCC-CC----------------EEEECSSCCCCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEEC-ce----------------EEEEecCCcCCCCC
Confidence 3789999999999999999999999765 66776541 11 22223322111111
Q ss_pred hhhHHHHhc-CCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHH--
Q 015822 141 DIVLMVLDA-SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI-- 206 (399)
Q Consensus 141 d~il~v~d~-~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~l-- 206 (399)
.+...+... .......+.+.++|+.+++ ..++++..|||||+||+.|| |++||||++||......+
T Consensus 363 tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~ 442 (538)
T 1yqt_A 363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 442 (538)
T ss_dssp BHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 111111110 0000123456778888888 67899999999999999998 999999999999865444
Q ss_pred -HHHhh--hCCcEEEEcCCCCHH
Q 015822 207 -LHEYK--IHNAEVLFREDATVD 226 (399)
Q Consensus 207 -l~~l~--~~~~~v~vthd~~~~ 226 (399)
++.+. ...++|++|||....
T Consensus 443 ~l~~l~~~~g~tvi~vsHd~~~~ 465 (538)
T 1yqt_A 443 AIRHLMEKNEKTALVVEHDVLMI 465 (538)
T ss_dssp HHHHHHHHHTCEEEEECSCHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHH
Confidence 44443 245999999997653
No 58
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.77 E-value=3.2e-19 Score=182.37 Aligned_cols=186 Identities=25% Similarity=0.300 Sum_probs=128.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccc-cccccCcccc-hhhccccC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGASEGKGRG-RQVIAVSK 138 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~-~~~~~~~~~~-~q~~~~~~ 138 (399)
+.+|+|+|+||||||||+|+|++.. +.++++||||+++..+.+.++|.++.++||||+. .........+ ...+..++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 4689999999999999999999987 5699999999999999999999999999999987 4332222222 12334567
Q ss_pred ChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEE
Q 015822 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (399)
Q Consensus 139 ~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~ 218 (399)
.+|++++|+|++.+....+. ++++
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~----------------------------------------------~il~---------- 346 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDR----------------------------------------------KILE---------- 346 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHH----------------------------------------------HHHH----------
T ss_pred cccEEEEEecCCCCCCHHHH----------------------------------------------HHHH----------
Confidence 88999999987654221110 0110
Q ss_pred EcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh---hhHHHHHcC-CCEEEecchhccchHHHHHHHHHHhCceEEEe
Q 015822 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-PNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 294 (399)
Q Consensus 219 vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~---~~~~~l~~~-~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~ 294 (399)
.+ ..+|+++|+||+|+... +++..+... .+++++||+++.|+++|.+.|.+.+.. .+
T Consensus 347 ------------~l----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~-~~-- 407 (482)
T 1xzp_A 347 ------------RI----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQE-IF-- 407 (482)
T ss_dssp ------------HH----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTHH-HH--
T ss_pred ------------Hh----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhh-hc--
Confidence 01 13699999999999743 223222222 368999999999999999999876421 00
Q ss_pred CCCCCCCCCCCcEEeecCCCCCCHHHHHHHHHHHH
Q 015822 295 KPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSL 329 (399)
Q Consensus 295 ~~~~~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l 329 (399)
.....+++ .+.||...+.++...+...+
T Consensus 408 ------~~~~~~~~-~~~R~~~~l~~a~~~L~~~~ 435 (482)
T 1xzp_A 408 ------ERGSDSLI-TNLRQKQLLENVKGHLEDAI 435 (482)
T ss_dssp ------HHHTTCSC-CSHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCCcceE-hhHHHHHHHHHHHHHHHHHH
Confidence 00122433 44477777777777766543
No 59
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.77 E-value=4.1e-19 Score=180.71 Aligned_cols=188 Identities=20% Similarity=0.231 Sum_probs=124.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCccc-chhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~-~~q~~~~~~~ 139 (399)
+.+|+|+|+||||||||+|+|++.. ..++++|+||++.....+.++|.++.++||||+.......... .......++.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANT 303 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhc
Confidence 4689999999999999999999976 4689999999999999999999999999999986432111111 1223345678
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|.+.+..... . .+++.
T Consensus 304 aD~vl~VvD~s~~~~~~~--~--------------------------------------------~i~~~---------- 327 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGD--Q--------------------------------------------EIYEQ---------- 327 (462)
T ss_dssp CSEEEEEEETTTCSCHHH--H--------------------------------------------HHHHH----------
T ss_pred CCEEEEEeccCCCCCHHH--H--------------------------------------------HHHHh----------
Confidence 999999999875432111 0 11111
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH---cCCCEEEecchhccchHHHHHHHHHHhCceEEEeCC
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA---RQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKP 296 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~---~~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~~~ 296 (399)
+ ..+|+++|+||+|+........+. ...+++++||+++.|+++|.+.|.+.+...
T Consensus 328 ------------l----~~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~------ 385 (462)
T 3geh_A 328 ------------V----KHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTG------ 385 (462)
T ss_dssp ------------H----TTSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTS------
T ss_pred ------------c----cCCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhcc------
Confidence 1 125999999999998655433222 234689999999999999999999877531
Q ss_pred CCCCCCCCCcEEeecCCCCCCHHHHHHHHHHHHh
Q 015822 297 QGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLV 330 (399)
Q Consensus 297 ~~~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~ 330 (399)
..+....+++ .+.||...++.+...+...+.
T Consensus 386 --~~~~~~~~~~-~~~R~~~~L~~a~~~L~~~~~ 416 (462)
T 3geh_A 386 --KVQAADMDLA-INQRQAAALTQAKMSLEQVQA 416 (462)
T ss_dssp --SSSSCCSSCC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCccccee-chHHHHHHHHHHHHHHHHHHH
Confidence 1112223433 444788888888877766553
No 60
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.77 E-value=2.4e-19 Score=173.40 Aligned_cols=157 Identities=30% Similarity=0.340 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEEC-CEeecccCccccccccc---cCcccchhhcccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGAS---EGKGRGRQVIAVS 137 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~-g~~i~~iD~~Gl~~~~~---~~~~~~~q~~~~~ 137 (399)
.+|+|+|.||||||||+|+|+|... .++++|+||++...|.+..+ +.++.++||||+..... .+..+.......+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 3999999999999999999999884 58999999999999999999 99999999999864320 0001112223345
Q ss_pred CChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEE
Q 015822 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (399)
Q Consensus 138 ~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v 217 (399)
+.+|++++|+|+.......+ ...+++.+.
T Consensus 91 ~~aD~il~VvD~~~~~~~~~---------------------------------------------~~~~~~~l~------ 119 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRD---------------------------------------------EEIYQNFIK------ 119 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHH---------------------------------------------HHHHHHHTG------
T ss_pred hcCCEEEEEEeCCCCCCchh---------------------------------------------HHHHHHHHH------
Confidence 66788888888765322111 000011111
Q ss_pred EEcCCCCHHHHHHHHhhccccccEEEEEecCCCC-ChhhH----HHHH----cCCCEEEecchhccchHHHHHHHHHHhC
Q 015822 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDV----DKLA----RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 218 ~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~-~~~~~----~~l~----~~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
....|+++|+||+|+. ..... ..+. ....++++||.++.|+++|.+.+.+.+.
T Consensus 120 ------------------~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 120 ------------------PLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp ------------------GGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ------------------hcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 1136999999999997 44332 2222 2356999999999999999999998875
No 61
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=1.3e-18 Score=167.77 Aligned_cols=157 Identities=22% Similarity=0.255 Sum_probs=112.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCcccccccccc-CcccchhhccccCChh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSSD 141 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~-~~~~~~q~~~~~~~~d 141 (399)
+|+|+|.||||||||+|+|+|... .+++.|+||++...|.+..++.++.++||||+...... +..+.......++.+|
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad 88 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVN 88 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999874 57899999999999999999999999999998642210 0011223345678899
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++|+|++......+. .+++.+.
T Consensus 89 ~il~VvD~~~~~~~~~~----------------------------------------------~i~~~l~---------- 112 (301)
T 1wf3_A 89 AVVWVVDLRHPPTPEDE----------------------------------------------LVARALK---------- 112 (301)
T ss_dssp EEEEEEETTSCCCHHHH----------------------------------------------HHHHHHG----------
T ss_pred EEEEEEECCCCCChHHH----------------------------------------------HHHHHHH----------
Confidence 99999988654221110 0111110
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChhh-H-HHHHc---CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-V-DKLAR---QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-~-~~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
......|+++|+||+|+..... + +.+.+ +.+++++||+++.|+++|.+.+.+.+.
T Consensus 113 ------------~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 113 ------------PLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp ------------GGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred ------------hhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 0001369999999999985543 2 22222 234899999999999999999987663
No 62
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=1.3e-18 Score=167.68 Aligned_cols=155 Identities=25% Similarity=0.314 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCccccc-cccc-cCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGAS-EGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~-~~~~-~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|+||||||||+|+|+|... .+++.|+||++...|.+..++.++.++||||+. .... .+..+.......++.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 4899999999999999999999874 578999999999999999999999999999986 2110 000111233445678
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++++|+.. ....+. .+++.+
T Consensus 89 ~D~vl~Vvd~~~-~~~~~~----------------------------------------------~i~~~l--------- 112 (301)
T 1ega_A 89 VELVIFVVEGTR-WTPDDE----------------------------------------------MVLNKL--------- 112 (301)
T ss_dssp EEEEEEEEETTC-CCHHHH----------------------------------------------HHHHHH---------
T ss_pred CCEEEEEEeCCC-CCHHHH----------------------------------------------HHHHHH---------
Confidence 898888888754 111110 011100
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCC-hhhH----HHHHcC---CCEEEecchhccchHHHHHHHHHHhC
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-IDDV----DKLARQ---PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~-~~~~----~~l~~~---~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
. ....|.++|+||+|+.. ...+ ..+.+. ..++++||+++.|+++|.+.+.+.+.
T Consensus 113 -------------~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 113 -------------R--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp -------------H--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred -------------H--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 0 11369999999999986 3332 333332 24899999999999999999988664
No 63
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.74 E-value=6.6e-19 Score=166.02 Aligned_cols=150 Identities=22% Similarity=0.300 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccC----c--ccchhhcccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG----K--GRGRQVIAVS 137 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~----~--~~~~q~~~~~ 137 (399)
+|+|+|.||||||||||+|+|....++++|++|++...|.+.++|..+.++||||.......+ . .....+ ...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~-~~~ 81 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS-VID 81 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH-Hhh
Confidence 799999999999999999999988899999999999999999999999999999986432110 0 011111 122
Q ss_pred CChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEE
Q 015822 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (399)
Q Consensus 138 ~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v 217 (399)
+.+|++++|+|++........ . ..+.
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l-~-----------------------------------------------~~l~------ 107 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYL-T-----------------------------------------------SQLF------ 107 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHH-H-----------------------------------------------HHHT------
T ss_pred CCCCEEEEEeeCCCchhHHHH-H-----------------------------------------------HHHH------
Confidence 678999999888653221110 0 0000
Q ss_pred EEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHH
Q 015822 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 218 ~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
....|+++|+||+|+.... ....+.+ ..+++++||.++.|+++|.+.+.+.
T Consensus 108 ------------------~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 108 ------------------ELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------------------TSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------------------HcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 0136999999999986332 2333321 2469999999999999999998764
No 64
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=2e-18 Score=174.82 Aligned_cols=153 Identities=21% Similarity=0.338 Sum_probs=100.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCccccccccccCc--ccchhhccccCCh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 140 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~--~~~~q~~~~~~~~ 140 (399)
+|+|||.||||||||||.|+|... .++++||||++...+.+.++|.++.++||||+........ .+..+....++.+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 799999999999999999999874 5899999999999999999999999999999864322211 1223445567889
Q ss_pred hhhHHHHhcCCcHHHH-HHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 141 DIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 141 d~il~v~d~~~~~~~~-~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
|++++|+|+....... ..+. .+++.
T Consensus 83 d~il~V~D~~~~~~~~d~~i~--------------------------------------------~~l~~---------- 108 (439)
T 1mky_A 83 DLVLFVVDGKRGITKEDESLA--------------------------------------------DFLRK---------- 108 (439)
T ss_dssp SEEEEEEETTTCCCHHHHHHH--------------------------------------------HHHHH----------
T ss_pred CEEEEEEECCCCCCHHHHHHH--------------------------------------------HHHHH----------
Confidence 9999999976532211 1111 11110
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh--hhH-HHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDV-DKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~--~~~-~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
..+|+++|+||+|+... .+. ..+.+ ..+++++||++|.|+++|++.+.+.+
T Consensus 109 -----------------~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 109 -----------------STVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp -----------------HTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------cCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 13799999999998633 112 23322 23589999999999999999987766
No 65
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.74 E-value=2.1e-19 Score=186.29 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=92.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEE---------EECCEeecccCccccccccccCcccch
Q 015822 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII---------HYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 61 ~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i---------~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
.|+++||+|+||||||||+++|+|...| ..|.+ .++|..++....+. .....++++..
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-----------~~G~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~ 112 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLIP-----------NLCGDNDSWDGVIRAFRGNELQNYFEKL--KNGEIRPVVKP 112 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCC-----------CTTTTCCSHHHHHHHTTTSTHHHHHHHH--HTTSCCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCccCcchhhhHHhhCCccHHHHHHHH--HHHhhhhhhhh
Confidence 3889999999999999999999998765 44442 12232221100000 00011222223
Q ss_pred hhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|....... ..+ ...+.. ....+++.+.|+.+|+ ..++++.+||+||+||++|| |++||||++
T Consensus 113 q~~~~~~~~~~~~v-~e~~~~---~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~ 188 (538)
T 1yqt_A 113 QYVDLIPKAVKGKV-IELLKK---ADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSY 188 (538)
T ss_dssp SCGGGSGGGCCSBH-HHHHHH---HCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred hhhhhcchhhhccH-HHHHhh---hhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 32211110 011 111110 0112346788999998 67889999999999999998 999999999
Q ss_pred CCHHHHH---HHHHHhhh-CCcEEEEcCCCCH
Q 015822 198 VDEKLCY---QILHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 198 LD~~~v~---~ll~~l~~-~~~~v~vthd~~~ 225 (399)
||+.... ++++.+.. ..++|++|||...
T Consensus 189 LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~ 220 (538)
T 1yqt_A 189 LDIRQRLNAARAIRRLSEEGKSVLVVEHDLAV 220 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9998544 45555543 4599999999654
No 66
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=3.6e-19 Score=156.98 Aligned_cols=160 Identities=21% Similarity=0.294 Sum_probs=106.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCccccccccccCccc-chhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~-~~q~~~~~~~ 139 (399)
+.+|+|+|+||||||||+|+|++... .++++|+||++...+.+.++|.++.++||||+.......... ....+..++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999874 578999999999999999999999999999975321100000 0112223567
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|.+++++|++....... . .++..+.
T Consensus 84 ad~~i~v~D~~~~~s~~~-------------------------------------------~---~~~~~~~-------- 109 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVDP-------------------------------------------A---EIWPEFI-------- 109 (172)
T ss_dssp CSEEEEEEETTTCCCCSH-------------------------------------------H---HHCHHHH--------
T ss_pred CCEEEEEEECCCCCCHHH-------------------------------------------H---HHHHHHH--------
Confidence 788888777654321100 0 0000000
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-hHHHHHcCCCEEEecchhccchHHHHHHHHHHhCc
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-~~~~l~~~~~~i~vSa~~~~gl~~L~~~i~~~l~~ 289 (399)
+ ......|+++|+||+|+.... ..... ...+++++||+++.|+++|.+.+.+.+..
T Consensus 110 ----------~---~~~~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 110 ----------A---RLPAKLPITVVRNKADITGETLGMSEV-NGHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp ----------H---HSCTTCCEEEEEECHHHHCCCCEEEEE-TTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ----------H---hcccCCCEEEEEECccCCcchhhhhhc-cCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 0 011237999999999985321 11000 11247899999999999999999887753
No 67
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=1.5e-18 Score=196.73 Aligned_cols=180 Identities=17% Similarity=0.166 Sum_probs=129.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++|||||++|||||||+++|.|...| .+|.|.++|.++.-++...+ +..+++++
T Consensus 1097 ~isl~I~~--Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----------~~G~I~iDG~di~~i~~~~l----R~~i~~V~ 1159 (1321)
T 4f4c_A 1097 GLSFSVEP--GQTLALVGPSGCGKSTVVALLERFYDT-----------LGGEIFIDGSEIKTLNPEHT----RSQIAIVS 1159 (1321)
T ss_dssp EEEEEECT--TCEEEEECSTTSSTTSHHHHHTTSSCC-----------SSSEEEETTEETTTBCHHHH----HTTEEEEC
T ss_pred ceeEEECC--CCEEEEECCCCChHHHHHHHHhcCccC-----------CCCEEEECCEEhhhCCHHHH----HhheEEEC
Confidence 56677776 889999999999999999999999754 89999999999988776544 34567778
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .++|.+-.|.. ....+.+.+.++..++ .+...-.+||||||||++||
T Consensus 1160 Qdp~LF~gTIreNI~~gld~~--~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ 1237 (1321)
T 4f4c_A 1160 QEPTLFDCSIAENIIYGLDPS--SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPK 1237 (1321)
T ss_dssp SSCCCCSEEHHHHHSSSSCTT--TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCS
T ss_pred CCCEeeCccHHHHHhccCCCC--CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCC
Confidence 87766654 34443322221 1233456677777665 12223368999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~ 260 (399)
+++|||||+||.++-..+.+.+. ...|+++|+|.++... ..+.|+|+.+.-++.....++|.
T Consensus 1238 ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~----------~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1238 ILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM----------NADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp EEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT----------TCSEEEEESSSSEEEEECHHHHH
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH----------hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999886555655554 3459999999976532 35789999987665444444443
No 68
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.6e-18 Score=176.98 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=101.8
Q ss_pred CcceEEEEe---CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcc
Q 015822 52 GEGFEVTKF---GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 128 (399)
Q Consensus 52 ~~~~~v~~~---~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~ 128 (399)
+++|++..+ .|+++||+|+||||||||+++|+|...+ ..|.. +.+ .+++
T Consensus 365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~~-~~~----------------~~i~ 416 (608)
T 3j16_B 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-----------DEGQD-IPK----------------LNVS 416 (608)
T ss_dssp SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-----------SBCCC-CCS----------------CCEE
T ss_pred ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCcC-ccC----------------CcEE
Confidence 567777764 2378999999999999999999999866 44431 000 0112
Q ss_pred cchhhccccCChhhhHHHH-hcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCC
Q 015822 129 RGRQVIAVSKSSDIVLMVL-DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (399)
Q Consensus 129 ~~~q~~~~~~~~d~il~v~-d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts 196 (399)
+.+|.........+..++. ...........+.+.|+.+++ ..++++..|||||+||++|| |++||||+
T Consensus 417 ~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 417 MKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp EECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred EecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 2222211111111111111 111111123456778888998 68899999999999999998 99999999
Q ss_pred CCCHHHHH---HHHHHhh--hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEec
Q 015822 197 HVDEKLCY---QILHEYK--IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNK 247 (399)
Q Consensus 197 ~LD~~~v~---~ll~~l~--~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK 247 (399)
+||..... ++++.+. ...++|++|||+..... ....++|++.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~---------~aDrvivl~~ 543 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY---------LADKVIVFEG 543 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH---------HCSEEEECEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH---------hCCEEEEEeC
Confidence 99998544 4555553 24599999999765431 2355666663
No 69
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.73 E-value=8.4e-19 Score=166.82 Aligned_cols=153 Identities=22% Similarity=0.291 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCc--cc---chhhcccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GR---GRQVIAVS 137 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~--~~---~~q~~~~~ 137 (399)
.+|+|+|.+|||||||+|+|+|....++++|+||+++..+.+.+++.++.++||||......... .. ........
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 83 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhh
Confidence 48999999999999999999999988999999999999999999999999999999864321100 00 01111123
Q ss_pred CChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEE
Q 015822 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (399)
Q Consensus 138 ~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v 217 (399)
+.+|++++|+|++........... + .
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~~~-l--------------------------------------------~--------- 109 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLTLQ-L--------------------------------------------L--------- 109 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHH-H--------------------------------------------H---------
T ss_pred cCCCEEEEEecCCChHHHHHHHHH-H--------------------------------------------H---------
Confidence 678888888887653221111000 0 0
Q ss_pred EEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 218 ~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
....|+++|+||+|+.... ..+.+.+ ..+++++||.+|.|+++|.+.+.+.+
T Consensus 110 ------------------~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 110 ------------------ELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp ------------------HHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred ------------------hcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 0136999999999986332 2333321 24689999999999999999998755
No 70
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.73 E-value=8.8e-18 Score=189.98 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=118.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||+|+||||||||+++|+|...| .+|.|.++|.++.-++... .+..+++++
T Consensus 1051 ~vsl~i~~--Ge~v~ivG~sGsGKSTl~~~l~g~~~p-----------~~G~I~i~g~~i~~~~~~~----~r~~i~~v~ 1113 (1284)
T 3g5u_A 1051 GLSLEVKK--GQTLALVGSSGCGKSTVVQLLERFYDP-----------MAGSVFLDGKEIKQLNVQW----LRAQLGIVS 1113 (1284)
T ss_dssp SCCEEECS--SSEEEEECSSSTTHHHHHHHHTTSSCC-----------SEEEEESSSSCTTSSCHHH----HTTSCEEEE
T ss_pred ceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEcccCCHHH----HHhceEEEC
Confidence 77888888 789999999999999999999999765 8999999999887655322 245577777
Q ss_pred hhccccCChhhhHHHHhcCC-cHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce---------
Q 015822 132 QVIAVSKSSDIVLMVLDASK-SEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~~-~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia--------- 188 (399)
|....+.. .+-..+.-+.. .....+.+.+.++..++ .+......|||||+||++||
T Consensus 1114 Q~~~l~~~-ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i 1192 (1284)
T 3g5u_A 1114 QEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192 (1284)
T ss_dssp SSCCCCSS-BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS
T ss_pred CCCccccc-cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE
Confidence 77644432 22222211111 00112234444444443 23334568999999999998
Q ss_pred eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCC
Q 015822 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~ 251 (399)
+++||||++||......+.+.+. ...|+++|+||..... ....|+|+++.-+.
T Consensus 1193 LiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~----------~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1193 LLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ----------NADLIVVIQNGKVK 1248 (1284)
T ss_dssp EEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG----------SCSEEEEEETBEEE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH----------cCCEEEEEECCEEE
Confidence 99999999999985555544443 3459999999987643 24678888876544
No 71
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.73 E-value=3.9e-19 Score=186.49 Aligned_cols=148 Identities=12% Similarity=0.102 Sum_probs=92.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEE---------EECCEeecccCccccccccccCcccch
Q 015822 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII---------HYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 61 ~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i---------~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
.|+++||+|+|||||||||++|+|...| +.|.+ .+.|..++..... . .......++..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p-----------~~G~~~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~i~~~~ 182 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLIP-----------NLCEDNDSWDNVIRAFRGNELQNYFER-L-KNGEIRPVVKP 182 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCC-----------CTTTTCCCHHHHHHHTTTSTHHHHHHH-H-HHTSCCCEEEC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCC-----------CCCccccccchhhheeCCEehhhhhhh-h-hhhhcceEEee
Confidence 4789999999999999999999999765 44442 1223222110000 0 00011122222
Q ss_pred hhccccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCC
Q 015822 132 QVIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (399)
Q Consensus 132 q~~~~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~ 197 (399)
|....... ..+...+ .... ..+++.+.|+.+|+ ..++++.+|||||+||++|| |++||||++
T Consensus 183 q~~~~~~~~~~~tv~e~l-~~~~---~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~ 258 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELL-KKVD---EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSY 258 (607)
T ss_dssp SCGGGGGGTCCSBHHHHH-HHTC---CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTT
T ss_pred chhhhchhhccccHHHHh-hhhH---HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 22111110 0111111 1111 12346778999998 67899999999999999998 999999999
Q ss_pred CCHHHH---HHHHHHhhh-CCcEEEEcCCCCH
Q 015822 198 VDEKLC---YQILHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 198 LD~~~v---~~ll~~l~~-~~~~v~vthd~~~ 225 (399)
||+... .++++.+.. ..++|++|||...
T Consensus 259 LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~ 290 (607)
T 3bk7_A 259 LDIRQRLKVARVIRRLANEGKAVLVVEHDLAV 290 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence 999854 445555543 4599999999764
No 72
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.72 E-value=5.9e-18 Score=191.37 Aligned_cols=170 Identities=13% Similarity=0.150 Sum_probs=118.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |+++||||+||||||||+++|+|...+ .+|.|.++|.++..++...+ +..+++++
T Consensus 408 ~isl~i~~--G~~~~ivG~sGsGKSTl~~ll~g~~~~-----------~~G~i~i~g~~i~~~~~~~~----r~~i~~v~ 470 (1284)
T 3g5u_A 408 GLNLKVKS--GQTVALVGNSGCGKSTTVQLMQRLYDP-----------LDGMVSIDGQDIRTINVRYL----REIIGVVS 470 (1284)
T ss_dssp EEEEEECT--TCEEEEECCSSSSHHHHHHHTTTSSCC-----------SEEEEEETTEEGGGSCHHHH----HHHEEEEC
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEHHhCCHHHH----HhheEEEc
Confidence 45666666 889999999999999999999999765 89999999999887765433 23467777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHH---------Hc--CC--cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELE---------AV--GL--RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~---------~~--gi--~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .+++.+..... . .+.+.+.++ .+ |+ .+......||||||||++||
T Consensus 471 Q~~~l~~~ti~eNi~~g~~~~-~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ 546 (1284)
T 3g5u_A 471 QEPVLFATTIAENIRYGREDV-T---MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546 (1284)
T ss_dssp SSCCCCSSCHHHHHHHHCSSC-C---HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred CCCccCCccHHHHHhcCCCCC-C---HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence 77655543 23333321111 1 122333333 32 22 34556679999999999999
Q ss_pred -eeeccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCC
Q 015822 189 -FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (399)
Q Consensus 189 -li~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~ 252 (399)
+++||||++||.+....+.+.+ ....|+++|+|++.... ....|+|+++.-+..
T Consensus 547 iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~----------~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 547 ILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR----------NADVIAGFDGGVIVE 604 (1284)
T ss_dssp EEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT----------TCSEEEECSSSCCCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------cCCEEEEEECCEEEE
Confidence 9999999999998544444443 34459999999976432 247788888776653
No 73
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.72 E-value=5.5e-18 Score=147.93 Aligned_cols=152 Identities=27% Similarity=0.372 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCc--ccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~--~~~~q~~~~~~~~ 140 (399)
.+|+|+|+||||||||+|+|+|....++++|++|+++..+.+.+++..+.++||||......... .+..... ...++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ 82 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI-INEKP 82 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHH-HHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHH-hcCCC
Confidence 47999999999999999999998878889999999999999999999999999999754211000 0001111 11256
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|....... .. ++..+
T Consensus 83 ~~~i~v~D~~~~~~~----~~--------------------------------------------~~~~~---------- 104 (165)
T 2wji_A 83 DLVVNIVDATALERN----LY--------------------------------------------LTLQL---------- 104 (165)
T ss_dssp SEEEEEEETTCHHHH----HH--------------------------------------------HHHHH----------
T ss_pred CEEEEEecCCchhHh----HH--------------------------------------------HHHHH----------
Confidence 777777776542111 00 11100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. ....|+++|.||+|+.... +.+.+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 105 ------------~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 105 ------------M--EMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ------------H--HTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ------------H--hcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 0 0136999999999975321 2233321 24589999999999999999987755
No 74
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=6.3e-17 Score=159.52 Aligned_cols=162 Identities=25% Similarity=0.343 Sum_probs=110.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCccc-chhhc-cccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVI-AVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~-~~q~~-~~~~~ 139 (399)
..+++|+|+||||||||+|.|+|....++++||+|.++..+.+..++..+.++||||+.......... ..+.. .....
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 246 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYL 246 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhc
Confidence 45899999999999999999999987788999999999999999999999999999975421110000 00100 11122
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|.+++|+|+ ++..++|.+....++..+..
T Consensus 247 ad~illV~D~-------------------------------------------s~~~~~~~~~~~~~~~~i~~------- 276 (357)
T 2e87_A 247 GNLIIYIFDP-------------------------------------------SEHCGFPLEEQIHLFEEVHG------- 276 (357)
T ss_dssp CSEEEEEECT-------------------------------------------TCTTSSCHHHHHHHHHHHHH-------
T ss_pred CCEEEEEEeC-------------------------------------------CccccCCHHHHHHHHHHHHH-------
Confidence 3444444443 44445555554444443321
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH-----cCCCEEEecchhccchHHHHHHHHHHhC
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA-----RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~-----~~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
. ...+|+++|.||+|+.....++... ...+++++||++|.|+++|.+.+.+.+.
T Consensus 277 -----------~----~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 277 -----------E----FKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp -----------H----TTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred -----------h----cCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 0 0137999999999998765443321 1245899999999999999999887663
No 75
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.71 E-value=1.5e-17 Score=168.50 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=48.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCcccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~ 121 (399)
..+++|+|+||||||||+|+|+|... .++++|+||+++..|.+.++|.++.++||||+..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence 35899999999999999999999874 5899999999999999999999999999999853
No 76
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.71 E-value=1.5e-18 Score=179.71 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEE-----------EECCEeecccCccccccccccCccc
Q 015822 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII-----------HYNDTKIQLLDLPGIIEGASEGKGR 129 (399)
Q Consensus 61 ~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i-----------~~~g~~i~~iD~~Gl~~~~~~~~~~ 129 (399)
.|+++||+||||||||||+++|+|...| +.|.+ .+.|.++..+-.. .. ....+...
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p-----------~~G~i~~~~~~~~~~~~~~g~~i~~~~~~-~~-~~~~~~~~ 90 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIP-----------NFGDPNSKVGKDEVLKRFRGKEIYNYFKE-LY-SNELKIVH 90 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCC-----------CTTCTTSCCCHHHHHHHHTTSTTHHHHHH-HH-TTCCCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCccccccchhhHHhhcCCeeHHHHHHH-Hh-hcccchhh
Confidence 4789999999999999999999999766 55554 2333322110000 00 00000000
Q ss_pred chhhccccC---ChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCC
Q 015822 130 GRQVIAVSK---SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (399)
Q Consensus 130 ~~q~~~~~~---~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpt 195 (399)
..+...... ...+ ...+.. ....+.+.+.++.+++ ..++++..||+||+||++|| |++||||
T Consensus 91 ~~~~~~~~~~~~~~~v-~~~l~~---~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt 166 (538)
T 3ozx_A 91 KIQYVEYASKFLKGTV-NEILTK---IDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPS 166 (538)
T ss_dssp ECSCTTGGGTTCCSBH-HHHHHH---HCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred ccchhhhhhhhccCcH-HHHhhc---chhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 011110000 0000 011110 0111246678888998 67899999999999999998 9999999
Q ss_pred CCCCHHHHHH---HHHHhhhCCcEEEEcCCCCH
Q 015822 196 THVDEKLCYQ---ILHEYKIHNAEVLFREDATV 225 (399)
Q Consensus 196 s~LD~~~v~~---ll~~l~~~~~~v~vthd~~~ 225 (399)
++||+..... +++.+....++|++|||+..
T Consensus 167 s~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~ 199 (538)
T 3ozx_A 167 SYLDVRERMNMAKAIRELLKNKYVIVVDHDLIV 199 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHH
Confidence 9999986544 44554444599999999754
No 77
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.71 E-value=5.5e-18 Score=161.12 Aligned_cols=180 Identities=22% Similarity=0.302 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccC--cccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~--~~~~~q~~~~~~~~ 140 (399)
.+|+|+|+||||||||||+|+|....++++||+|+++..|.+.. +..+.++||||........ ......++ ....+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~-~~~~~ 81 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL-LSQRA 81 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH-HTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH-hcCCC
Confidence 48999999999999999999999888999999999999998876 7789999999975422110 01111121 11468
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|++........ + ..+
T Consensus 82 d~vi~V~D~t~~e~~~~~----~--------------------------------------------~~l---------- 103 (272)
T 3b1v_A 82 DSILNVVDATNLERNLYL----T--------------------------------------------TQL---------- 103 (272)
T ss_dssp SEEEEEEEGGGHHHHHHH----H--------------------------------------------HHH----------
T ss_pred CEEEEEecCCchHhHHHH----H--------------------------------------------HHH----------
Confidence 888888887653211110 0 000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhCceEEEe
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 294 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~ 294 (399)
. ....|+++|+||+|+.... +...+.+ ..+++++||+++.|+++|.+.+.+.+..
T Consensus 104 ------------~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~~----- 164 (272)
T 3b1v_A 104 ------------I--ETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTTS----- 164 (272)
T ss_dssp ------------H--HTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCTT-----
T ss_pred ------------H--hcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHhh-----
Confidence 0 0136999999999975321 2233321 2458999999999999999999875421
Q ss_pred CCCCCCCCCCCcEEeecCCCCCCHHHHHHHHHHHHhh
Q 015822 295 KPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVK 331 (399)
Q Consensus 295 ~~~~~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~ 331 (399)
+ ...+..+.. +..++.....+...+..
T Consensus 165 ------~-~~~~~~~~~---~~~~e~~i~~~~~~~~~ 191 (272)
T 3b1v_A 165 ------T-VGDLAFPIY---DDRLEAAISQILEVLGN 191 (272)
T ss_dssp ------T-CCSCCCCCC---CHHHHHHHHHHHHHHGG
T ss_pred ------c-cCCCccCCC---CHHHHHHHHHHHHHHhh
Confidence 0 011212223 55677777777666643
No 78
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.71 E-value=1.9e-17 Score=187.75 Aligned_cols=177 Identities=16% Similarity=0.165 Sum_probs=126.7
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|.+.+ |+.+||||++|||||||+++|+|...+ ..|.|.++|.++.-++..-++ ..++++.
T Consensus 436 ~isl~i~~--G~~vaivG~sGsGKSTll~ll~~~~~~-----------~~G~I~idG~~i~~~~~~~lr----~~i~~v~ 498 (1321)
T 4f4c_A 436 GMNLRVNA--GQTVALVGSSGCGKSTIISLLLRYYDV-----------LKGKITIDGVDVRDINLEFLR----KNVAVVS 498 (1321)
T ss_dssp EEEEEECT--TCEEEEEECSSSCHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCHHHHH----HHEEEEC
T ss_pred ceEEeecC--CcEEEEEecCCCcHHHHHHHhcccccc-----------ccCcccCCCccchhccHHHHh----hcccccC
Confidence 56677777 789999999999999999999999755 899999999999888765443 3467777
Q ss_pred hhccccCC--hhhhHHHHhcCCcHHHHHHHHHHHHHcCC-------------cccccccccchhhHhhcCce--------
Q 015822 132 QVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (399)
Q Consensus 132 q~~~~~~~--~d~il~v~d~~~~~~~~~~i~~~L~~~gi-------------~~~~~~~~LS~g~kqr~~ia-------- 188 (399)
|....+.. .|+|.+- .. ....+.+.+.++..++ .+...-..||||||||++||
T Consensus 499 Q~~~Lf~~TI~eNI~~g---~~-~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~ 574 (1321)
T 4f4c_A 499 QEPALFNCTIEENISLG---KE-GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574 (1321)
T ss_dssp SSCCCCSEEHHHHHHTT---CT-TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred CcceeeCCchhHHHhhh---cc-cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCC
Confidence 77655543 3444432 11 1123345555555443 34445579999999999999
Q ss_pred -eeeccCCCCCCHH---HHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH
Q 015822 189 -FNSTLPLTHVDEK---LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (399)
Q Consensus 189 -li~DEpts~LD~~---~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l 259 (399)
+++|||||+||.+ .+.+.+..+....|+|+|+|+..... ..+.|+|+++.-++.....++|
T Consensus 575 IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~----------~aD~Iivl~~G~ive~Gth~eL 639 (1321)
T 4f4c_A 575 ILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR----------NADLIISCKNGQVVEVGDHRAL 639 (1321)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT----------TCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH----------hCCEEEEeeCCeeeccCCHHHH
Confidence 9999999999976 45555555555669999999987533 3577899988766543333333
No 79
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.70 E-value=9.3e-18 Score=158.26 Aligned_cols=182 Identities=25% Similarity=0.309 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCc--ccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~--~~~~q~~~~~~~~ 140 (399)
.+|+|+|.||||||||||+|+|....++++|++|++...|.+.+++..+.++||||......... .....++ ....+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~-~~~~~ 84 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYL-LKGDA 84 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHH-HHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHH-hhcCC
Confidence 47999999999999999999998888999999999999999999999999999999754321110 0011111 11568
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|++.......... .+
T Consensus 85 d~ii~V~D~t~~~~~~~~~~------------------------------------------------~l---------- 106 (258)
T 3a1s_A 85 DLVILVADSVNPEQSLYLLL------------------------------------------------EI---------- 106 (258)
T ss_dssp SEEEEEEETTSCHHHHHHHH------------------------------------------------HH----------
T ss_pred CEEEEEeCCCchhhHHHHHH------------------------------------------------HH----------
Confidence 88888888776432211100 00
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhCceEEEe
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 294 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~ 294 (399)
. ....|+++|+||+|+.... +...+.+ ..+++++||+++.|+++|.+.+.+.+..
T Consensus 107 ------------~--~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~~----- 167 (258)
T 3a1s_A 107 ------------L--EMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQK----- 167 (258)
T ss_dssp ------------H--TTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHHS-----
T ss_pred ------------H--hcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhhc-----
Confidence 0 0136999999999975321 2333322 2468999999999999999999876531
Q ss_pred CCCCCCCCCCCcEEeecCCCCCCHHHHHHHHHHHHhh
Q 015822 295 KPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVK 331 (399)
Q Consensus 295 ~~~~~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~ 331 (399)
+....|..+.. +..++.....+...+..
T Consensus 168 ------~~~~~~~~~~y---~~~~~~~i~~~~~~~~~ 195 (258)
T 3a1s_A 168 ------NTILHRMILDY---GEKVESEIKKVENFLRD 195 (258)
T ss_dssp ------SSCSCCCCCCC---CHHHHHHHHHHHHHHTT
T ss_pred ------cccCCCcccCC---chhHHHHHHHHHHHHhh
Confidence 00111222233 55667777777777754
No 80
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.5e-18 Score=178.26 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHH---HHHHhhh-CCcEEEEcC
Q 015822 157 QILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEVLFRE 221 (399)
Q Consensus 157 ~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~---ll~~l~~-~~~~v~vth 221 (399)
+.+.+.|+.+|+ ..++++..||+||+||++|| +++||||++||+..... +++.+.. ..++|++||
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 279 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 567888999998 78899999999999999998 99999999999986554 4444543 348999999
Q ss_pred CCCHH
Q 015822 222 DATVD 226 (399)
Q Consensus 222 d~~~~ 226 (399)
|+...
T Consensus 280 dl~~~ 284 (608)
T 3j16_B 280 DLSVL 284 (608)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 97654
No 81
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.69 E-value=3.8e-17 Score=140.63 Aligned_cols=153 Identities=22% Similarity=0.297 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
+|+++|++|||||||+|.+++... .++++|++|.++....+.+++..+.++||||..................++.+|+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 82 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEV 82 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCE
Confidence 799999999999999999998774 4788999999999999999999999999999754221000011222334677888
Q ss_pred hHHHHhcCCcHHHH-HHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 143 VLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 143 il~v~d~~~~~~~~-~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
+++++|........ ..+.. ++..
T Consensus 83 ~i~v~d~~~~~~~~~~~~~~--------------------------------------------~~~~------------ 106 (161)
T 2dyk_A 83 VLFAVDGRAELTQADYEVAE--------------------------------------------YLRR------------ 106 (161)
T ss_dssp EEEEEESSSCCCHHHHHHHH--------------------------------------------HHHH------------
T ss_pred EEEEEECCCcccHhHHHHHH--------------------------------------------HHHh------------
Confidence 88888876532111 11111 1110
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh-hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
...|.++|+||+|+.... ....+.+ ...++++||+++.|++++.+.+.+.+
T Consensus 107 ---------------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 107 ---------------KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ---------------HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ---------------cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 136999999999997542 2222322 23589999999999999999988765
No 82
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.68 E-value=2.9e-17 Score=155.61 Aligned_cols=185 Identities=20% Similarity=0.277 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcc-cchhhccccCChh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSSD 141 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~-~~~q~~~~~~~~d 141 (399)
.+|+|+|+||||||||+|+|+|....++++|++|++...+.+.+++..+.++||||.......... ..........++|
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 83 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNAD 83 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCc
Confidence 479999999999999999999998889999999999999999999999999999997642211100 0111111236788
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|++..........+.+
T Consensus 84 ~vi~v~D~~~~~~~~~~~~~~~---------------------------------------------------------- 105 (271)
T 3k53_A 84 VIVDIVDSTCLMRNLFLTLELF---------------------------------------------------------- 105 (271)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHH----------------------------------------------------------
T ss_pred EEEEEecCCcchhhHHHHHHHH----------------------------------------------------------
Confidence 8888888765322111100000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhCceEEEeC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTK 295 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~~ 295 (399)
. ....|+++|+||+|+.... ....+.+ ..+++++||.++.|+++|.+.+.+.+...
T Consensus 106 -----------~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~----- 167 (271)
T 3k53_A 106 -----------E--MEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGK----- 167 (271)
T ss_dssp -----------H--TTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTC-----
T ss_pred -----------h--cCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhcc-----
Confidence 0 0116999999999975322 1233321 24589999999999999999998766321
Q ss_pred CCCCCCCCCCcEEeecCCCCCCHHHHHHHHHHHHhhc
Q 015822 296 PQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKD 332 (399)
Q Consensus 296 ~~~~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~ 332 (399)
.. ..+.... ....+++++..+...+.+.
T Consensus 168 -----~~-~~~~~~~---~~~~~e~~~~~l~~~~~~~ 195 (271)
T 3k53_A 168 -----VT-TNPIIPR---YDEDIEREIKHISELLRGT 195 (271)
T ss_dssp -----CC-CCCCCCC---CCHHHHHHHHHHHHHHHSS
T ss_pred -----cc-CCCCCcC---CCHHHHHHHHHHHHHHhhc
Confidence 00 0111112 2556778888877776654
No 83
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.68 E-value=1.7e-17 Score=176.61 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=52.9
Q ss_pred HHHHHcCC---cccccccccchhhHhhcCce-----------eeeccCCCCCCHHH---HHHHHHHhhh-CCcEEEEcCC
Q 015822 161 KELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKL---CYQILHEYKI-HNAEVLFRED 222 (399)
Q Consensus 161 ~~L~~~gi---~~~~~~~~LS~g~kqr~~ia-----------li~DEpts~LD~~~---v~~ll~~l~~-~~~~v~vthd 222 (399)
..|+.+|+ ..++++..|||||+||++|| |++||||++||+.. +.++++.+.. ..|+|+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34778887 36899999999999999988 88899999999874 4455555543 3599999999
Q ss_pred CCHHH
Q 015822 223 ATVDD 227 (399)
Q Consensus 223 ~~~~~ 227 (399)
+....
T Consensus 264 ~~~~~ 268 (670)
T 3ux8_A 264 EDTML 268 (670)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76433
No 84
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.67 E-value=3.9e-17 Score=165.23 Aligned_cols=203 Identities=20% Similarity=0.221 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCccccccccccC--cccc--hhhcccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGRG--RQVIAVS 137 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~--~~~~--~q~~~~~ 137 (399)
.+|+|+|.||||||||+|+|+|... .++++|+||++...+.+.++|..+.++||||+....... .... ......+
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~ 255 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHH
Confidence 5899999999999999999999875 489999999999999999999999999999986533211 1110 0112244
Q ss_pred CChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEE
Q 015822 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (399)
Q Consensus 138 ~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v 217 (399)
+.+|++++|+|++......+. .++..
T Consensus 256 ~~ad~~llv~D~~~~~s~~~~----------------------------------------------~~~~~-------- 281 (436)
T 2hjg_A 256 DRSEVVAVVLDGEEGIIEQDK----------------------------------------------RIAGY-------- 281 (436)
T ss_dssp HHCSEEEEEEETTTCCCHHHH----------------------------------------------HHHHH--------
T ss_pred HhCCEEEEEEcCCcCCcHHHH----------------------------------------------HHHHH--------
Confidence 567777777777653221110 01110
Q ss_pred EEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh--H----HHHH------cCCCEEEecchhccchHHHHHHHHH
Q 015822 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--V----DKLA------RQPNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 218 ~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~--~----~~l~------~~~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
+. ...+|+++|+||+|+..... . +.+. ...+++++||++|.|+++|.+.+.+
T Consensus 282 --------------~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~ 345 (436)
T 2hjg_A 282 --------------AH--EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 345 (436)
T ss_dssp --------------HH--HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred --------------HH--HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHH
Confidence 00 11379999999999975322 1 1121 1346899999999999988776654
Q ss_pred HhCce--EEEe--------------CCC---CC--------CCCCCCcEEeecCCCCCCHHHHHHHHHHHHhhccceeEE
Q 015822 286 EMGLV--RVYT--------------KPQ---GQ--------QPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLV 338 (399)
Q Consensus 286 ~l~~i--~~~~--------------~~~---~~--------~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~~ 338 (399)
.+... ++-| .+| |. ......|.++-. .+....+-..+.++|.+.|+.++.
T Consensus 346 ~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~~i~y~~q~~~~pp~~~~~---~n~~~~~~~~y~r~l~~~~r~~~~ 422 (436)
T 2hjg_A 346 ASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVF---VNDPELMHFSYERFLENRIRDAFG 422 (436)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTTEEEEE---ESCGGGCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCcceeEEeEecCCCCCCEEEEE---eCCcccCCHHHHHHHHHHHHHHcC
Confidence 43210 0000 000 00 001233555555 666677888899999999988766
No 85
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.67 E-value=8.9e-17 Score=170.99 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCC---cccccccccchhhHhhcCce------------eeeccCCCCCCHHHHHH---HHHHhhh-CCcEE
Q 015822 157 QILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQ---ILHEYKI-HNAEV 217 (399)
Q Consensus 157 ~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------------li~DEpts~LD~~~v~~---ll~~l~~-~~~~v 217 (399)
....+.|..+++ .+++++.+|||||+||++|| |++||||++||+..... +++.+.. ..|+|
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 445677888887 46788999999999999987 78899999999985544 4555543 34999
Q ss_pred EEcCCCCHHHHHHHHhhccccccEEEEE
Q 015822 218 LFREDATVDDLIDVIEGNRKYMKCVYVY 245 (399)
Q Consensus 218 ~vthd~~~~~~~~~i~~~~~~~p~iiv~ 245 (399)
+||||+.... ....++++
T Consensus 601 ~vtHd~~~~~----------~~d~i~~l 618 (670)
T 3ux8_A 601 VIEHNLDVIK----------TADYIIDL 618 (670)
T ss_dssp EECCCHHHHT----------TCSEEEEE
T ss_pred EEeCCHHHHH----------hCCEEEEe
Confidence 9999975432 24667777
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.66 E-value=6.4e-17 Score=176.12 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCc----ccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHHHHHhh-hCCcEEEEcC
Q 015822 156 RQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFRE 221 (399)
Q Consensus 156 ~~~i~~~L~~~gi~----~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~ll~~l~-~~~~~v~vth 221 (399)
.+.+.+.|+.+|+. .++++..|||||+||+.|| |++||||++||......+++.+. +.+++|++||
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISH 956 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITH 956 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECS
T ss_pred HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEEC
Confidence 35678899999992 4788999999999999998 99999999999998888888876 4569999999
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKID 249 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~D 249 (399)
|..... ...+.+++++..-
T Consensus 957 D~e~v~---------~l~DrVivL~~G~ 975 (986)
T 2iw3_A 957 SAEFTK---------NLTEEVWAVKDGR 975 (986)
T ss_dssp CHHHHT---------TTCCEEECCBTTB
T ss_pred CHHHHH---------HhCCEEEEEECCE
Confidence 965422 1245666665443
No 87
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.66 E-value=3.6e-17 Score=149.21 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=104.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC--CCCCccccceeeeeceEEE-ECCEeecccCccccccccccC------cccchh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIH-YNDTKIQLLDLPGIIEGASEG------KGRGRQ 132 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~-~~g~~i~~iD~~Gl~~~~~~~------~~~~~q 132 (399)
..+|+|+|.+|||||||+|.|++.. ..++++|+||.++....+. .++..+.++||||+....... .....+
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 3589999999999999999999986 4789999999998776665 557889999999975321100 001112
Q ss_pred hccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhh
Q 015822 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI 212 (399)
Q Consensus 133 ~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~ 212 (399)
++.....+|++++++|+........ ..+++.+
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~----------------------------------------------~~~~~~l-- 140 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELD----------------------------------------------RRMIEWF-- 140 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHH----------------------------------------------HHHHHHH--
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHH----------------------------------------------HHHHHHH--
Confidence 2223344566666666543211100 0111111
Q ss_pred CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhH----H----HHHc--------CCCEEEecchhccch
Q 015822 213 HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----D----KLAR--------QPNSVVISCNLKLNL 276 (399)
Q Consensus 213 ~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~----~----~l~~--------~~~~i~vSa~~~~gl 276 (399)
. ....|+++|+||+|+....+. + .+.. ..+++++||+++.|+
T Consensus 141 --------------------~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv 198 (223)
T 4dhe_A 141 --------------------A--PTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGL 198 (223)
T ss_dssp --------------------G--GGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSH
T ss_pred --------------------H--hcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCH
Confidence 1 123699999999999865432 1 1222 134899999999999
Q ss_pred HHHHHHHHHHhC
Q 015822 277 DRLLARMWEEMG 288 (399)
Q Consensus 277 ~~L~~~i~~~l~ 288 (399)
++|.+.|.+.+.
T Consensus 199 ~~l~~~l~~~~~ 210 (223)
T 4dhe_A 199 DDAHALIESWLR 210 (223)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999998774
No 88
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.65 E-value=5.7e-17 Score=143.64 Aligned_cols=153 Identities=27% Similarity=0.365 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCc--ccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~--~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++....++++|++|+++..+.+.+++..+.++||||......... .+..... ....+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ 86 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI-INEKP 86 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHH-HHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHH-hccCC
Confidence 48999999999999999999998777889999999999999999999999999999653211000 0001110 00235
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...... ...++..+.
T Consensus 87 ~~~i~v~d~~~~~~------------------------------------------------~~~~~~~~~--------- 109 (188)
T 2wjg_A 87 DLVVNIVDATALER------------------------------------------------NLYLTLQLM--------- 109 (188)
T ss_dssp SEEEEEEEGGGHHH------------------------------------------------HHHHHHHHH---------
T ss_pred CEEEEEecchhHHH------------------------------------------------HHHHHHHHH---------
Confidence 55555555432110 111111110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
....|+++|.||+|+.... ....+.+ ...++++||+++.|+++|.+.+.+.+.
T Consensus 110 ---------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 110 ---------------EMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp ---------------TTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHT
T ss_pred ---------------hcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 1136999999999975321 2333322 245899999999999999999988774
No 89
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.64 E-value=3.8e-16 Score=170.07 Aligned_cols=142 Identities=11% Similarity=0.119 Sum_probs=92.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
+++|++.+ |++++|+|+|||||||||++|+|-.. ...+.. ...+ + ++..
T Consensus 453 ~vsl~I~~--Ge~v~LiGpNGsGKSTLLk~LagG~i--~g~~~~---~~~~-~-----------------------~~v~ 501 (986)
T 2iw3_A 453 KTQLRLKR--ARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQ---EECR-T-----------------------VYVE 501 (986)
T ss_dssp EEEEEEET--TCEEEEECSTTSSHHHHHHHHHHTCS--TTCCCT---TTSC-E-----------------------EETT
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCc--CCCccc---ccee-E-----------------------EEEc
Confidence 56777776 78999999999999999999995221 111100 0000 0 1111
Q ss_pred hhc-cccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce---------eeeccCCCCC
Q 015822 132 QVI-AVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (399)
Q Consensus 132 q~~-~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia---------li~DEpts~L 198 (399)
|.. .......+..++....... .+++.+.|+.+|+ ..++++..|||||+||+.|+ |++||||++|
T Consensus 502 q~~~~~~~~ltv~e~l~~~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~L 579 (986)
T 2iw3_A 502 HDIDGTHSDTSVLDFVFESGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHL 579 (986)
T ss_dssp CCCCCCCTTSBHHHHHHTTCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTC
T ss_pred ccccccccCCcHHHHHHHhhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 110 0111111221221111011 4567889999998 46889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhhh-CCcEEEEcCCCCHH
Q 015822 199 DEKLCYQILHEYKI-HNAEVLFREDATVD 226 (399)
Q Consensus 199 D~~~v~~ll~~l~~-~~~~v~vthd~~~~ 226 (399)
|......+++.+.. ..++|++|||....
T Consensus 580 D~~~~~~l~~~L~~~g~tvIivSHdl~~l 608 (986)
T 2iw3_A 580 DTVNVAWLVNYLNTCGITSITISHDSVFL 608 (986)
T ss_dssp CHHHHHHHHHHHHHSCSEEEEECSCHHHH
T ss_pred CHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 99977777666653 34899999996543
No 90
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.64 E-value=1.1e-17 Score=169.17 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCcccccccccc-CcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~-~~~~~~q~~~~~~~~ 140 (399)
.+|+|||+||||||||||.|+|.. +.++++||+|++...+.+.++|..+.++||||+...... ...+..+....++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 389999999999999999999976 458999999999999999999999999999998532111 001112333455678
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|+.......+. .+.++
T Consensus 84 d~il~vvD~~~~~~~~d~-------------------------------------------~~~~~-------------- 106 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADE-------------------------------------------EVAKI-------------- 106 (436)
T ss_dssp SEEEEEEETTTCSCHHHH-------------------------------------------HHHHH--------------
T ss_pred CEEEEEEeCCCCCCHHHH-------------------------------------------HHHHH--------------
Confidence 888888887543221110 00010
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-hHHHHH--cCCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-~~~~l~--~~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
+. ...+|+++|+||+|+.... ....+. ....++++||.+|.|+++|++.+.+.+.
T Consensus 107 -----------l~--~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 107 -----------LY--RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp -----------HT--TCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred -----------HH--HcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 10 1247999999999987432 111111 1236899999999999999999988764
No 91
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=132.40 Aligned_cols=151 Identities=20% Similarity=0.161 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.+|.+.....+.++| ..+.++||||..... ......++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 82 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR-------TITSTYYRGT 82 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS-------SCCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh-------hhHHHHhccC
Confidence 4899999999999999999999876667788999999999999998 568889999953211 1222346788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++. .+.
T Consensus 83 d~~i~v~d~~~~~s~-~~~~~~~~--------------------------------------------~~~--------- 108 (181)
T 3tw8_B 83 HGVIVVYDVTSAESF-VNVKRWLH--------------------------------------------EIN--------- 108 (181)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHH--------------------------------------------HHH---------
T ss_pred CEEEEEEECCCHHHH-HHHHHHHH--------------------------------------------HHH---------
Confidence 999999998765322 11222211 111
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHH--cCCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~--~~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|.++|+||+|+.... ....+. ...+++++||+++.|++++.+.+.+.+
T Consensus 109 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 109 -------------QNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp -------------HHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 011236999999999986432 222222 124689999999999999998887654
No 92
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.62 E-value=1.9e-15 Score=132.29 Aligned_cols=150 Identities=22% Similarity=0.199 Sum_probs=106.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
..+|+|+|++|||||||+|.|++.......+|++|.+.....+.+++..+.++||||...... .....+..+|
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d 80 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT-------MRARGAQVTD 80 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC-------SCCSSCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH-------HHHHHHhhCC
Confidence 358999999999999999999998877777899999999999999999999999999643211 1123356788
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|......... .+.+..+
T Consensus 81 ~~i~v~d~~~~~~~~~----------------------------------------------~~~l~~~----------- 103 (178)
T 2lkc_A 81 IVILVVAADDGVMPQT----------------------------------------------VEAINHA----------- 103 (178)
T ss_dssp EEEEEEETTCCCCHHH----------------------------------------------HHHHHHH-----------
T ss_pred EEEEEEECCCCCcHHH----------------------------------------------HHHHHHH-----------
Confidence 8888888755311100 0001100
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCCh--hhHH-HHHcC----------CCEEEecchhccchHHHHHHHHHHhC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDVD-KLARQ----------PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~--~~~~-~l~~~----------~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
. ....|+++|+||+|+... +... .+... ..++++||+++.|+++|.+.+.+.+.
T Consensus 104 -----------~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 104 -----------K--AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp -----------G--GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred -----------H--hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 0 123699999999999753 2222 22111 24789999999999999998877654
No 93
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.62 E-value=4e-16 Score=158.74 Aligned_cols=201 Identities=18% Similarity=0.220 Sum_probs=125.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCc--cc--chhhccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GR--GRQVIAV 136 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~--~~--~~q~~~~ 136 (399)
..+|+++|.+|+|||||+|+|++.. ..++++|+||+++....+.++|..+.++||||+........ .. .......
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 274 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 274 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH
Confidence 4689999999999999999999987 46899999999999999999999999999999865332110 10 1112223
Q ss_pred cCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcE
Q 015822 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (399)
Q Consensus 137 ~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~ 216 (399)
++.+|++++++|+........ ..++..
T Consensus 275 ~~~ad~~llviD~~~~~~~~~----------------------------------------------~~~~~~------- 301 (456)
T 4dcu_A 275 IDRSEVVAVVLDGEEGIIEQD----------------------------------------------KRIAGY------- 301 (456)
T ss_dssp HHHCSEEEEEEETTTCCCHHH----------------------------------------------HHHHHH-------
T ss_pred HhhCCEEEEEEeCCCCcCHHH----------------------------------------------HHHHHH-------
Confidence 456777777777655322111 001110
Q ss_pred EEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hH-HHHHc------CCCEEEecchhccchHHHHHHHH
Q 015822 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DV-DKLAR------QPNSVVISCNLKLNLDRLLARMW 284 (399)
Q Consensus 217 v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~-~~l~~------~~~~i~vSa~~~~gl~~L~~~i~ 284 (399)
+. ...+|+++|+||+|+.... +. +.+.+ ..+++++||++|.|+++|.+.+.
T Consensus 302 ---------------~~--~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 364 (456)
T 4dcu_A 302 ---------------AH--EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAII 364 (456)
T ss_dssp ---------------HH--HTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred ---------------HH--HcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHH
Confidence 10 0137999999999997432 11 12211 35699999999999999887776
Q ss_pred HHhCc------------------------------eEEEeCCCCCCCCCCCcEEeecCCCCCCHHHHHHHHHHHHhhccc
Q 015822 285 EEMGL------------------------------VRVYTKPQGQQPDFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVK 334 (399)
Q Consensus 285 ~~l~~------------------------------i~~~~~~~~~~p~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~ 334 (399)
+.+.. .++|-.. .....+|.++-. ++.++.+-..+.++|.+.|+
T Consensus 365 ~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~ki~y~~---q~~~~pp~~~~~---~n~~~~~~~~y~r~l~~~~r 438 (456)
T 4dcu_A 365 KASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYAT---QVSVKPPSFVVF---VNDPELMHFSYERFLENRIR 438 (456)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEE---EEETTTTEEEEE---ESCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhCCCCCCCCceeeEEEEe---cCCCCCCEEEEE---ecCcccCCHHHHHHHHHHHH
Confidence 54420 0000000 002233555555 56667777888888888888
Q ss_pred eeEE
Q 015822 335 YVLV 338 (399)
Q Consensus 335 ~a~~ 338 (399)
.++.
T Consensus 439 ~~~~ 442 (456)
T 4dcu_A 439 DAFG 442 (456)
T ss_dssp HHHC
T ss_pred HhCC
Confidence 7765
No 94
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.62 E-value=5.3e-16 Score=142.66 Aligned_cols=161 Identities=22% Similarity=0.325 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCccc-chh-hccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQ-VIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~-~~q-~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++....++++|+||.+...+.+.+++..+.++||||........... ... .......+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 109 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHIN 109 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccc
Confidence 5899999999999999999999876678899999999999999999999999999985321111100 001 11124556
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|++.+... +......++..+.
T Consensus 110 d~~i~v~d~~~~~s~-------------------------------------------~~~~~~~~~~~l~--------- 137 (228)
T 2qu8_A 110 GVILFIIDISEQCGL-------------------------------------------TIKEQINLFYSIK--------- 137 (228)
T ss_dssp EEEEEEEETTCTTSS-------------------------------------------CHHHHHHHHHHHH---------
T ss_pred cEEEEEEecccccCc-------------------------------------------chHHHHHHHHHHH---------
Confidence 777777776543210 0011111111111
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChhh--------HHHHHc-C---CCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--------VDKLAR-Q---PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~--------~~~l~~-~---~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
......|+++|+||+|+..... ...+.. . ..++++||+++.|+++|.+.+.+.+.
T Consensus 138 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 138 -------------SVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp -------------TCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------------HhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHH
Confidence 0011369999999999975322 222222 2 35889999999999999988877653
No 95
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.61 E-value=9.4e-16 Score=143.49 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=63.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCcccc--ceeeeeceEEEECCEeecccCccccccccccC-cccchhhcc---
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEF--TTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIA--- 135 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~--TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~-~~~~~q~~~--- 135 (399)
..+|+|+|.+|||||||+|+|+|....++.+++ ||+.+..+.+.++|..+.++||||+....... ..+......
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~ 100 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYL 100 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHH
Confidence 358999999999999999999999876655544 99999999999999999999999986432211 111112211
Q ss_pred -ccCChhhhHHHHhcCC
Q 015822 136 -VSKSSDIVLMVLDASK 151 (399)
Q Consensus 136 -~~~~~d~il~v~d~~~ 151 (399)
..+.+|++++|+|+..
T Consensus 101 ~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHTTCCSEEEEEEETTB
T ss_pred hcCCCCCEEEEEEeCCC
Confidence 2377888888888753
No 96
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.60 E-value=1.2e-15 Score=135.28 Aligned_cols=153 Identities=19% Similarity=0.193 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccC------cccchhhcc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG------KGRGRQVIA 135 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~------~~~~~q~~~ 135 (399)
.+|+|+|++|||||||+|.|++.. ..+++.+++|.++..... +.++.++||||+....... .........
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 589999999999999999999987 457888999987764332 4567899999964321000 000111222
Q ss_pred ccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCc
Q 015822 136 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (399)
Q Consensus 136 ~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~ 215 (399)
....+|++++++|+........ ..+++.+.
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~----------------------------------------------~~~~~~~~---- 130 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSD----------------------------------------------LMMVEWMK---- 130 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHH----------------------------------------------HHHHHHHH----
T ss_pred cCcCceEEEEEecCCCCCCHHH----------------------------------------------HHHHHHHH----
Confidence 2233455555555443211100 00111110
Q ss_pred EEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHH-------HHHcC---CCEEEecchhccchHHHHHHHHH
Q 015822 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-------KLARQ---PNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 216 ~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~-------~l~~~---~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
....|+++|+||+|+....+.. ..... .+++++||+++.|+++|.+.+.+
T Consensus 131 --------------------~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 190 (195)
T 3pqc_A 131 --------------------SLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIST 190 (195)
T ss_dssp --------------------HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred --------------------HcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence 0136999999999998654321 11111 36899999999999999999988
Q ss_pred HhC
Q 015822 286 EMG 288 (399)
Q Consensus 286 ~l~ 288 (399)
.+.
T Consensus 191 ~l~ 193 (195)
T 3pqc_A 191 LLK 193 (195)
T ss_dssp HHC
T ss_pred Hhh
Confidence 763
No 97
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.59 E-value=8.9e-17 Score=163.55 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCc-ccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~-~~~~q~~~~~~~~ 140 (399)
.+|+|+|.||||||||+|.|+|.. ..++++||+|++...+.+.+.|..+.++||||+........ .+..+....++.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 103 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 103 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC
Confidence 489999999999999999999987 45899999999999999999999999999999763211100 1112233345667
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|+.......+. .+.+
T Consensus 104 d~il~VvD~~~~~~~~d~----------------------------------------------~l~~------------ 125 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADE----------------------------------------------EVAK------------ 125 (456)
T ss_dssp SEEEEEEESSSCSCHHHH----------------------------------------------HHHH------------
T ss_pred CEEEEEEeCCCCCChHHH----------------------------------------------HHHH------------
Confidence 888888776542211110 0111
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChhh-HHHHH--cCCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-~~~l~--~~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.+. ...+|+++|+||+|+..... ..... .....+++||.++.|+++|.+.+.+.+.
T Consensus 126 ----------~l~--~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 126 ----------ILY--RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp ----------HHT--TCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred ----------HHH--HcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 111 12479999999999874321 11111 2345789999999999999999987664
No 98
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.59 E-value=1.1e-15 Score=136.21 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=86.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC--CCCCccccceeeeeceEEEECCEeecccCccccccccccC------cccchhh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG------KGRGRQV 133 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~------~~~~~q~ 133 (399)
..+|+|+|++|||||||+|.|++.. ..+++.|++|++.....+ + ..+.++||||+....... .......
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--N-DELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--T-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--C-CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 3589999999999999999999976 457788999988765433 3 378899999964321000 0001111
Q ss_pred ccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhC
Q 015822 134 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIH 213 (399)
Q Consensus 134 ~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~ 213 (399)
......+|++++++|+........ ..+++.
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~----------------------------------------------~~~~~~---- 129 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDD----------------------------------------------VQMYEF---- 129 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHH----------------------------------------------HHHHHH----
T ss_pred HhhhhcCCEEEEEEECCCCCCHHH----------------------------------------------HHHHHH----
Confidence 112223355555555443211100 001111
Q ss_pred CcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhH----HHHHc------CCCEEEecchhccchHHHHHHH
Q 015822 214 NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLAR------QPNSVVISCNLKLNLDRLLARM 283 (399)
Q Consensus 214 ~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~----~~l~~------~~~~i~vSa~~~~gl~~L~~~i 283 (399)
+. ....|+++|+||+|+....+. +.+.+ ...++++||+++.|+++|.+.+
T Consensus 130 ------------------~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 189 (195)
T 1svi_A 130 ------------------LK--YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp ------------------HH--HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred ------------------HH--HcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHH
Confidence 10 023699999999999865433 22221 2358999999999999999998
Q ss_pred HHHh
Q 015822 284 WEEM 287 (399)
Q Consensus 284 ~~~l 287 (399)
.+.+
T Consensus 190 ~~~l 193 (195)
T 1svi_A 190 KKMI 193 (195)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 99
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.59 E-value=8.7e-15 Score=159.04 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCC---cccccccccchhhHhhcCce------------eeeccCCCCCCHHHHHHHHHHhh----hCCcE
Q 015822 156 RQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEYK----IHNAE 216 (399)
Q Consensus 156 ~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------------li~DEpts~LD~~~v~~ll~~l~----~~~~~ 216 (399)
.....+.|+.+|+ .+.+++..|||||+||+.|| +++||||++||......+++.+. ...|+
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3456788999998 46789999999999999987 88999999999986666555553 24599
Q ss_pred EEEcCCCCHHHHHHHHhhccccccEEEEE
Q 015822 217 VLFREDATVDDLIDVIEGNRKYMKCVYVY 245 (399)
Q Consensus 217 v~vthd~~~~~~~~~i~~~~~~~p~iiv~ 245 (399)
|+|+||+.... ....|+++
T Consensus 862 IvI~HdL~~i~----------~ADrIivL 880 (916)
T 3pih_A 862 IVIEHNLDVIK----------NADHIIDL 880 (916)
T ss_dssp EEECCCHHHHT----------TCSEEEEE
T ss_pred EEEeCCHHHHH----------hCCEEEEe
Confidence 99999975422 24667777
No 100
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.59 E-value=6.7e-15 Score=130.93 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.+|.+.....+.+++ ..+.++|+||..... ......++.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 89 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 89 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHHhhC
Confidence 4899999999999999999999877767778899999999999988 468889999953211 1222345789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++. .+.
T Consensus 90 d~~i~v~d~~~~~s~-~~~~~~~~--------------------------------------------~i~--------- 115 (196)
T 3tkl_A 90 HGIIVVYDVTDQESF-NNVKQWLQ--------------------------------------------EID--------- 115 (196)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHH--------------------------------------------HHH---------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHH--------------------------------------------HHH---------
Confidence 999999998764321 11111111 110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.. .....|+++|+||+|+.... ....+.. ..+++++||+++.|++++.+.+.+.+.
T Consensus 116 ----------~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 116 ----------RY--ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp ----------HH--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 01236999999999987442 2233321 246899999999999999888877553
No 101
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.58 E-value=7.1e-15 Score=131.29 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+|+|++|||||||++.+++.... .+ .+|..+..+.+.++|..+.++||||...... .....++.+|+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 93 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQARR-------LWKDYFPEVNG 93 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEEEEEEECCCSGGGTT-------SGGGGCTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEEEEEEECCCCHHHHH-------HHHHHHhcCCE
Confidence 48999999999999999999976532 22 3567778899999999999999999643211 11234578999
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++++|.+.+..- +.+..++..+ ++.
T Consensus 94 ~i~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~~------------- 119 (190)
T 1m2o_B 94 IVFLVDAADPERF-DEARVELDAL----------------------------------------FNI------------- 119 (190)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HTC-------------
T ss_pred EEEEEECCChHHH-HHHHHHHHHH----------------------------------------Hcc-------------
Confidence 9999998765321 1111111110 000
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCCh---hhHHHHHcC--------------CCEEEecchhccchHHHHHHHHH
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ--------------PNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~---~~~~~l~~~--------------~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
......|+++|.||+|+... +++...... ..++++||+++.|++++.+.+.+
T Consensus 120 -----------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 120 -----------AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp -----------GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred -----------hhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 01123799999999999752 233332211 13789999999999999988865
Q ss_pred H
Q 015822 286 E 286 (399)
Q Consensus 286 ~ 286 (399)
.
T Consensus 189 ~ 189 (190)
T 1m2o_B 189 Y 189 (190)
T ss_dssp T
T ss_pred h
Confidence 3
No 102
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.58 E-value=2.9e-16 Score=157.90 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCE-eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~-~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
..|+|+|.+|+|||||+|+|++... .++++++||+++....+.+.+. ++.++||||.......+..........++.+
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~a 114 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRA 114 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcC
Confidence 5899999999999999999999874 6889999999999999999876 8999999998654333222333445567789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|+.... ....+..++..
T Consensus 115 D~vllVvD~~~~~-~~~~~l~~l~~------------------------------------------------------- 138 (423)
T 3qq5_A 115 DCGILVTDSAPTP-YEDDVVNLFKE------------------------------------------------------- 138 (423)
T ss_dssp SEEEEECSSSCCH-HHHHHHHHHHH-------------------------------------------------------
T ss_pred CEEEEEEeCCChH-HHHHHHHHHHh-------------------------------------------------------
Confidence 9999998873221 11111111110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChhhH---HHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV---DKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~---~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
...|.++|+||+|+...... +.+.+ ..+++++||+++.|+++|.+.+.+.+.
T Consensus 139 ----------------~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 139 ----------------MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp ----------------TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred ----------------cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 13699999999999854432 23322 135789999999999999999998874
No 103
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.57 E-value=1.3e-14 Score=128.35 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=101.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
..+|+|+|++|||||||+|.+++.. . ..+ ..|.......+.+++..+.++||||..... ......++.+|
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~-~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 87 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-V-DTI-SPTLGFNIKTLEHRGFKLNIWDVGGQKSLR-------SYWRNYFESTD 87 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-C-SSC-CCCSSEEEEEEEETTEEEEEEEECCSHHHH-------TTGGGGCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-C-Ccc-cccCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCC
Confidence 4689999999999999999999876 2 222 224556667788899999999999974321 11223467899
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++|+|...+... +.+..++.. ++..
T Consensus 88 ~ii~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 114 (186)
T 1ksh_A 88 GLIWVVDSADRQRM-QDCQRELQS----------------------------------------LLVE------------ 114 (186)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHH----------------------------------------HHTC------------
T ss_pred EEEEEEECcCHHHH-HHHHHHHHH----------------------------------------HHhC------------
Confidence 99999998765321 111111111 0000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH---c-------CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA---R-------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~---~-------~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
......|.++|+||+|+......+.+. . ..+++++||+++.|++++.+.+.+.+.
T Consensus 115 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 115 ------------ERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp ------------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------hhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 001237999999999997543322221 1 113789999999999999999887663
No 104
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.57 E-value=3.9e-15 Score=132.36 Aligned_cols=156 Identities=14% Similarity=0.186 Sum_probs=103.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
..+|+|+|.+|||||||+|.|++....... ..+|+......+.+++..+.++||||..... ......++++|
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 92 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN-ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR-------NLWEHYYKEGQ 92 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CCCCSSEEEEEEECSSCEEEEEEECCSTTTG-------GGGGGGGGGCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCCccceeEEEEEECCEEEEEEECCCCHHHH-------HHHHHHHhcCC
Confidence 358999999999999999999987632233 3456677778888899999999999954321 11223457789
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++|+|+..+... +.+...+.. ++...
T Consensus 93 ~ii~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~~----------- 120 (190)
T 2h57_A 93 AIIFVIDSSDRLRM-VVAKEELDT----------------------------------------LLNHP----------- 120 (190)
T ss_dssp EEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HHHST-----------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHhCh-----------
Confidence 99999998765321 111111111 00000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh---hHHHHH---c----CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLA---R----QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~---~~~~l~---~----~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.......|+++|+||+|+.... ++.... . ...++.+||+++.|+++|.+.+.+.+.
T Consensus 121 -----------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 121 -----------DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp -----------TTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred -----------hhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0000247999999999997542 232222 1 124789999999999999999988764
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.56 E-value=6.3e-15 Score=132.61 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+|+|++|||||||++.+++.... .+ ..|..+..+.+.++|.++.++||||...... .....++.+|.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d~ 95 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIAGMTFTTFDLGGHIQARR-------VWKNYLPAING 95 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CC-------GGGGGGGGCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEECCEEEEEEECCCcHhhHH-------HHHHHHhcCCE
Confidence 48999999999999999999986532 22 2466777899999999999999999543211 11223567899
Q ss_pred hHHHHhcCCcH
Q 015822 143 VLMVLDASKSE 153 (399)
Q Consensus 143 il~v~d~~~~~ 153 (399)
+++++|+..+.
T Consensus 96 ~i~v~D~~~~~ 106 (198)
T 1f6b_A 96 IVFLVDCADHE 106 (198)
T ss_dssp EEEEEETTCGG
T ss_pred EEEEEECCCHH
Confidence 99999987653
No 106
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=138.66 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccc--cceeeeeceEEEECCEeecccCccccccccccCccc----chhhccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYE--FTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAV 136 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p--~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~----~~q~~~~ 136 (399)
.+|+|+|++|||||||+|+|+|.....+.+| ++|+++..+.+.++|..+.++||||+.......... .......
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 109 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLT 109 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999999988777777 899999999999999999999999986533211111 1111122
Q ss_pred cCChhhhHHHHhcC
Q 015822 137 SKSSDIVLMVLDAS 150 (399)
Q Consensus 137 ~~~~d~il~v~d~~ 150 (399)
.+.+|++++|+|..
T Consensus 110 ~~~~~~~l~v~d~~ 123 (239)
T 3lxx_A 110 SPGPHALLLVVPLG 123 (239)
T ss_dssp TTCCSEEEEEEETT
T ss_pred CCCCcEEEEEeeCC
Confidence 34556666666653
No 107
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.55 E-value=1.1e-14 Score=126.31 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+|+|++|||||||+|.+++.... .. ..|.......+.+++..+.++||||..... ......++.+|+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d~ 77 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGLTSIR-------PYWRCYYSNTDA 77 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETTEEEEEEEECCCGGGG-------GGGGGGCTTCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECCEEEEEEECCCChhhh-------HHHHHHhccCCE
Confidence 58999999999999999999875532 22 234555667788899999999999964321 112234678999
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++++|+..+..- ..+..++.. ++..
T Consensus 78 ii~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------- 103 (171)
T 1upt_A 78 VIYVVDSCDRDRI-GISKSELVA----------------------------------------MLEE------------- 103 (171)
T ss_dssp EEEEEETTCCTTH-HHHHHHHHH----------------------------------------HHTC-------------
T ss_pred EEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHhc-------------
Confidence 9999998765321 111111111 0000
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCChh---hHHHHH--c-----CCCEEEecchhccchHHHHHHHHHHh
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLA--R-----QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~---~~~~l~--~-----~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+.... ++.... . ...++++||+++.|++++.+.+.+.+
T Consensus 104 -----------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 104 -----------EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp -----------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------hhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 001247999999999997542 222211 1 01378999999999999999887765
No 108
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.55 E-value=8.5e-15 Score=129.26 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=97.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
..+|+|+|.+|||||||+|.|++... .....|.......+.+++..+.++||||..... ......++.+|
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 90 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV---VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR-------SSWNTYYTNTE 90 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC---EEEECCSSSSCEEEEETTEEEEEEEESSSGGGT-------CGGGGGGTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC---CccCCcCceeeEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 35899999999999999999998764 122334444556788899999999999974321 12223467899
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++|+|...+... +.+..++.. +..
T Consensus 91 ~ii~v~D~~~~~s~-~~~~~~~~~--------------------------------------------~~~--------- 116 (181)
T 2h17_A 91 FVIVVVDSTDRERI-SVTREELYK--------------------------------------------MLA--------- 116 (181)
T ss_dssp EEEEEEETTCTTTH-HHHHHHHHH--------------------------------------------HHT---------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH--------------------------------------------HHh---------
Confidence 99999998764221 111111111 000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCCh---hhHHHHHc---C----CCEEEecchhccchHHHHHHHHH
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR---Q----PNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~---~~~~~l~~---~----~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
. ......|+++|+||+|+... +++..... . ..++++||+++.|++++.+.+.+
T Consensus 117 ---------~--~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 117 ---------H--EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp ---------C--GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred ---------C--hhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 0 00124799999999999753 22322211 1 14789999999999999988865
No 109
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.55 E-value=5.9e-15 Score=138.44 Aligned_cols=90 Identities=18% Similarity=0.247 Sum_probs=67.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-CCCcccc-ceeeeeceEEEECCEeecccCccccccccccCccc----chhhcc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEF-TTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIA 135 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~-TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~----~~q~~~ 135 (399)
..+|+|+|.+|||||||+|.|+|... ..+..|. +|++...+.+.++|..+.++||||+.........+ ......
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999999874 4444566 89999999999999999999999986532211000 111222
Q ss_pred ccCChhhhHHHHhcCC
Q 015822 136 VSKSSDIVLMVLDASK 151 (399)
Q Consensus 136 ~~~~~d~il~v~d~~~ 151 (399)
.++.+|++++|+|+..
T Consensus 102 ~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HTTCCSEEEEEEETTC
T ss_pred cCCCCcEEEEEEeCCC
Confidence 4577888888888764
No 110
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.55 E-value=1.2e-14 Score=125.35 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=98.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
+|+|+|++|||||||+|.+++.... ...| |+......+.+++..+.++||||..... ......++++|++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 71 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGGGH-------HHHHHHTTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChhhH-------HHHHHHhccCCEE
Confidence 6899999999999999999875532 2233 5556666777888999999999964311 1122346889999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCC
Q 015822 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (399)
Q Consensus 144 l~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~ 223 (399)
++++|...+..- +.+..++..+ +..
T Consensus 72 i~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~~-------------- 96 (164)
T 1r8s_A 72 IFVVDSNDRERV-NEAREELMRM----------------------------------------LAE-------------- 96 (164)
T ss_dssp EEEEETTCGGGH-HHHHHHHHHH----------------------------------------HTC--------------
T ss_pred EEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hhc--------------
Confidence 999998765321 1111111110 000
Q ss_pred CHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH---c-------CCCEEEecchhccchHHHHHHHHHHh
Q 015822 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA---R-------QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 224 ~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~---~-------~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+......+.+. . ..+++.+||+++.|++++.+.+.+.+
T Consensus 97 ----------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 97 ----------DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp ----------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ----------hhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 001236999999999997542222221 1 01378999999999999999998765
No 111
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.55 E-value=2.5e-14 Score=127.52 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+|+|.+|||||||+|.|++......+|. .|.......+...+..+.++||||..... ......++.+|+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 89 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHIT-ATVGYNVETFEKGRVAFTVFDMGGAKKFR-------GLWETYYDNIDA 89 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCC-CCSSEEEEEEEETTEEEEEEEECCSGGGG-------GGGGGGCTTCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccc-cccceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHHHhcCCE
Confidence 5899999999999999999999875431222 23445555677788999999999974321 122234678999
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++|+|...+..- +.+..++..+ +.....
T Consensus 90 ii~v~D~~~~~s~-~~~~~~~~~~----------------------------------------~~~~~~---------- 118 (199)
T 4bas_A 90 VIFVVDSSDHLRL-CVVKSEIQAM----------------------------------------LKHEDI---------- 118 (199)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HTSHHH----------
T ss_pred EEEEEECCcHHHH-HHHHHHHHHH----------------------------------------HhChhh----------
Confidence 9999998865321 1122221110 000000
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCChh---hHHH-HH-----c--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDK-LA-----R--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~---~~~~-l~-----~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.. ........|+++|+||+|+.... ++.. +. + ...++.+||+++.|++++.+.+.+.+.
T Consensus 119 ------~~-~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 119 ------RR-ELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp ------HS-BCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred ------hh-cccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 00 00000147999999999998552 2211 11 1 123789999999999999998877653
No 112
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.55 E-value=1.2e-14 Score=125.59 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.++.+.....+.+++. .+.++||||..... ......++.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 78 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD-------AITKAYYRGA 78 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT-------CCCHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHH-------HHHHHHhcCC
Confidence 48999999999999999999987654444455556677777888764 67889999954211 1122245778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+... +.+..++ ..+.
T Consensus 79 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~i~--------- 104 (168)
T 1z2a_A 79 QACVLVFSTTDRESF-EAISSWR--------------------------------------------EKVV--------- 104 (168)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHH---------
Confidence 999999988764321 1111111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|.++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 105 ---------~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 105 ---------A----EVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp ---------H----HHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ---------H----hCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 0 0023699999999998642 22333321 23589999999999999999887654
No 113
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.55 E-value=8.1e-15 Score=128.93 Aligned_cols=150 Identities=19% Similarity=0.147 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+|+|++|||||||+|.+++... .....|.......+.+++..+.++||||..... ......++.+|+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 88 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEV---VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR-------PYWRCYYADTAA 88 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEE---EEECSSTTCCEEEEEETTEEEEEEEEC----CC-------TTGGGTTTTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCc---CccCCcCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCCE
Confidence 5899999999999999999997543 112234445566788889999999999975321 122234678999
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++++|...+.. .+.+..++.. +...
T Consensus 89 ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~~~--------- 114 (183)
T 1moz_A 89 VIFVVDSTDKDR-MSTASKELHL--------------------------------------------MLQE--------- 114 (183)
T ss_dssp EEEEEETTCTTT-HHHHHHHHHH--------------------------------------------HTTS---------
T ss_pred EEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHcC---------
Confidence 999999876422 1111111111 0000
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCChh---hHHHHHcC-------CCEEEecchhccchHHHHHHHHHHh
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLARQ-------PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~---~~~~l~~~-------~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|.++|+||+|+.... ++...... .+++++||+++.|++++.+.+.+.+
T Consensus 115 -----------~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 115 -----------EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp -----------STTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred -----------hhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 001247999999999997542 22222111 1378999999999999999887754
No 114
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.55 E-value=1.2e-14 Score=149.13 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+|+|.+|||||||||.|++.. .+. .++|++...+.+.+.+..+.++||||..... ......++.+|+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~-~~~--~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ad~ 392 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ-SVT--TIPTVGFNVETVTYKNVKFNVWDVGGQDKIR-------PLWRHYYTGTQG 392 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS-CCC--CCCCSSEEEEEEESSSCEEEEEEECCCGGGS-------GGGGGGGTTCCE
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC-CCC--cCCccceeEEEEEeCCEEEEEEECCCcHHHH-------HHHHHHhccCCE
Confidence 589999999999999999999876 333 4558999999999999999999999954321 122335688999
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++|+|.+.+... +.+..++.. +++.
T Consensus 393 ~i~V~D~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------- 418 (497)
T 3lvq_E 393 LIFVVDCADRDRI-DEARQELHR----------------------------------------IIND------------- 418 (497)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHH----------------------------------------HHTS-------------
T ss_pred EEEEEECcchhHH-HHHHHHHHH----------------------------------------Hhhh-------------
Confidence 9999998775322 111111111 0000
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH---cC-------CCEEEecchhccchHHHHHHHHHHhC
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA---RQ-------PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~---~~-------~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.....+|+|+|+||+|+......+.+. .. ..++++||++|.|+++|++.|.+.+.
T Consensus 419 -----------~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 419 -----------REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp -----------GGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred -----------hhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 011247999999999997543222221 11 13789999999999999999998775
No 115
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.55 E-value=6.4e-15 Score=129.73 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.+++........|.++.+.....+.++| ..+.++||||..... ......++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 81 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGA 81 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh-------hhHHHHHhcC
Confidence 4899999999999999999998765556668888888888888888 678899999964321 1122345789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.. .+.+..++ ..+..
T Consensus 82 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 108 (183)
T 2fu5_C 82 MGIMLVYDITNEKS-FDNIRNWI--------------------------------------------RNIEE-------- 108 (183)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 99999999876532 12222221 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|.++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 109 ----------~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 109 ----------H---ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp ----------H---SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred ----------h---cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0113699999999998642 22333321 23588999999999999988876654
No 116
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.54 E-value=3e-14 Score=128.28 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.++.+.....+.+++. .+.++||||..... ......++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 81 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR-------TITSSYYRGS 81 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT-------CCCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHhccCC
Confidence 48999999999999999999987765556677788887888888875 68899999954321 1122345788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++ ..+..
T Consensus 82 d~vilv~d~~~~~s~-~~~~~~~--------------------------------------------~~i~~-------- 108 (206)
T 2bcg_Y 82 HGIIIVYDVTDQESF-NGVKMWL--------------------------------------------QEIDR-------- 108 (206)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 999999998765321 1121111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|.++|+||+|+.... ....+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 109 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 109 -----------Y--ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp -----------H--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 01236999999999997532 2233321 23589999999999999988877655
No 117
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.54 E-value=3.3e-14 Score=124.11 Aligned_cols=156 Identities=16% Similarity=0.166 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.+++........|.++.+.....+.+++. .+.++||||..... ......++.+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 80 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR-------SLRTPFYRGS 80 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH-------HHHGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhHHHHHhcC
Confidence 48999999999999999999987655555677777777788888884 78899999954211 1222346778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+... +.+..++.. +......
T Consensus 81 ~~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~~~~-------- 111 (177)
T 1wms_A 81 DCCLLTFSVDDSQSF-QNLSNWKKE----------------------------------------FIYYADV-------- 111 (177)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHHHTC--------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH----------------------------------------HHHHccc--------
Confidence 999999888765321 111111111 0000000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh----hhHHHHHc---CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~----~~~~~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 112 -------------~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 112 -------------KEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp -------------SCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------cccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00124699999999998622 23333322 24589999999999999998887654
No 118
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.54 E-value=2.7e-14 Score=125.52 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.+++.. .+++++.|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 78 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-------IFPQTYSIDI 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTC-------CCCGGGTTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhh-------HHHHHHHhcC
Confidence 489999999999999999999654 4567777888777888888884 56899999964321 1112245778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+.. .+.+..++.. ++..+
T Consensus 79 ~~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~~---------- 107 (181)
T 3t5g_A 79 NGYILVYSVTSIKS-FEVIKVIHGK----------------------------------------LLDMV---------- 107 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHHHC----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHhc----------
Confidence 99999998876432 1222211111 11100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.....|+++|+||+|+... ++...+.+ ...++++||+++.|++++.+.+.+.+.
T Consensus 108 --------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 108 --------------GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp ------------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred --------------CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0123699999999998633 22333322 134889999999999999998887664
No 119
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.54 E-value=1.9e-14 Score=126.89 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 83 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR-------SVTRSYYRGA 83 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHHhcC
Confidence 4899999999999999999998776556667778788888888888 578899999954211 1223456789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+... +.+..++ ..+..
T Consensus 84 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~~-------- 110 (186)
T 2bme_A 84 AGALLVYDITSRETY-NALTNWL--------------------------------------------TDARM-------- 110 (186)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 999999998764321 1111111 11100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+.... +...+.. ...++.+||+++.|++++.+.+.+.+
T Consensus 111 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 111 -----------L--ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp -----------H--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------h--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0 01236999999999986321 2222222 23478999999999999988876644
No 120
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.54 E-value=1.7e-14 Score=127.23 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++.. .+.+++.||.+.....+.+++.. +.++||||..... ......++.+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 76 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 76 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS-CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---C-------TTHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHH-------HHHHHHHhcC
Confidence 489999999999999999999765 45778889988888888888876 6679999954211 1111234567
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+... +.+..++. .+.
T Consensus 77 ~~~i~v~d~~~~~s~-~~~~~~~~--------------------------------------------~~~--------- 102 (189)
T 4dsu_A 77 EGFLCVFAINNTKSF-EDIHHYRE--------------------------------------------QIK--------- 102 (189)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHH--------------------------------------------HHH---------
T ss_pred CEEEEEEECCCHHHH-HHHHHHHH--------------------------------------------HHH---------
Confidence 888888887664321 11111111 110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
... .....|+++|+||+|+.... ....+.+ ..+++++||+++.|++++.+.+.+.+.
T Consensus 103 ---------~~~--~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 103 ---------RVK--DSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp ---------HHT--TCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---------Hhc--CCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 000 11247999999999987432 2333321 245899999999999999888877553
No 121
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.54 E-value=4.1e-14 Score=126.13 Aligned_cols=151 Identities=22% Similarity=0.243 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.+++... ..+++.|+.+.....+.+++.. +.++||||..... ......++++
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 95 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-------RLRPLSYADS 95 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-------HHhHhhccCC
Confidence 4899999999999999999998763 4566667766666677788765 5899999953211 1222346789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.........++ ..+.
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~--------------------------------------------~~~~--------- 122 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWE--------------------------------------------PEIK--------- 122 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHH--------------------------------------------HHHH---------
T ss_pred cEEEEEEECCCHHHHHHHHHHHH--------------------------------------------HHHH---------
Confidence 99999999876533211111111 1000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-------hhHHHHH---cCCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-------DDVDKLA---RQPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-------~~~~~l~---~~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|.||+|+... ++...+. ....++.+||+++.|++++.+.+.+.+
T Consensus 123 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 123 -------------HYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp -------------HHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 01123699999999998642 2222332 223489999999999999999988765
No 122
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=128.49 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=59.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
..+|+|+|.+|||||||++.+++.. .+.+++.||.+.....+.++|. .+.++||||...... .....+++
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 91 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK-------LRPLCYTN 91 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS-------SGGGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH-------HhHhhcCC
Confidence 4589999999999999999999876 4577888888888888888886 466999999643211 11124578
Q ss_pred hhhhHHHHhcCCcH
Q 015822 140 SDIVLMVLDASKSE 153 (399)
Q Consensus 140 ~d~il~v~d~~~~~ 153 (399)
+|++++|+|...+.
T Consensus 92 ~~~~i~v~d~~~~~ 105 (201)
T 2q3h_A 92 TDIFLLCFSVVSPS 105 (201)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CcEEEEEEECCCHH
Confidence 99999999987653
No 123
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.54 E-value=1.7e-14 Score=125.00 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.+++........+.+|.+.....+.+++. .+.++|+||...... . .....++.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~--~~~~~~~~~ 76 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG----W--LQDHCLQTG 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch----h--hhhhhhccC
Confidence 37999999999999999999987766566677788888888889885 466889998643211 0 011123457
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+.. .+.+..++.. +....
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~~---------- 105 (169)
T 3q85_A 77 DAFLIVFSVTDRRS-FSKVPETLLR----------------------------------------LRAGR---------- 105 (169)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHHHS----------
T ss_pred CEEEEEEECCChHH-HHHHHHHHHH----------------------------------------HHhcc----------
Confidence 88888888776432 1111111110 00000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.....|+++|.||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 106 --------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 106 --------------PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp --------------TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 0114799999999998632 22233322 23479999999999999999887765
No 124
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.54 E-value=2.6e-14 Score=125.06 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC---EeecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g---~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|++|||||||+|.|++........|.++.+.....+.+++ ..+.++|+||..... ......++.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 81 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFYRG 81 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCSTT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHhhc
Confidence 4899999999999999999998765444456666777777777762 578899999953211 112234578
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|.+++++|...+... +.+..++.. +......
T Consensus 82 ~d~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~~~~------- 113 (182)
T 1ky3_A 82 ADCCVLVYDVTNASSF-ENIKSWRDE----------------------------------------FLVHANV------- 113 (182)
T ss_dssp CCEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHHHCC-------
T ss_pred CCEEEEEEECCChHHH-HHHHHHHHH----------------------------------------HHHHhcc-------
Confidence 8999999988765321 111111111 0000000
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh------hhHHHHHc---CCCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI------DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~------~~~~~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+... ++...+.+ ...++++||+++.|++++.+.+.+.+
T Consensus 114 --------------~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 114 --------------NSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp --------------SCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --------------cCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 00124699999999998532 22333332 24589999999999999998887654
No 125
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.54 E-value=3.6e-14 Score=127.99 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=105.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
..+|+|+|++|||||||+|.|++........|.+|.+.....+.++| ..+.++||||..... ......++.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 92 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR-------TITTAYYRG 92 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT-------CCCHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhcc
Confidence 35899999999999999999998776666678888888888888988 578999999964321 112234578
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|...+.. .+.+..++ ..+.
T Consensus 93 ~d~ii~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~-------- 119 (213)
T 3cph_A 93 AMGIILVYDVTDERT-FTNIKQWF--------------------------------------------KTVN-------- 119 (213)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHH--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH--------
Confidence 899999999876432 11111111 1110
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.. .....|+++|+||+|+... +....+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 120 ----------~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 120 ----------EH---ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp ----------HH---TTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ----------Hh---cCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0113699999999998522 22333321 23589999999999999988877654
No 126
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.54 E-value=2.3e-14 Score=123.96 Aligned_cols=152 Identities=17% Similarity=0.134 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.+|.+.....+.++| ..+.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR-------TITTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS-------CCCHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh-------hhHHHHhccC
Confidence 4799999999999999999998776556667777777777787776 467889999954321 1122345788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+.. .+.+..++ ..+..
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 103 (170)
T 1g16_A 77 MGIILVYDITDERT-FTNIKQWF--------------------------------------------KTVNE-------- 103 (170)
T ss_dssp EEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 99999999876532 11111111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|.++|+||+|+... +....+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 104 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 104 -------------HANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp -------------HSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------hcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00123699999999998532 22233321 23589999999999999998887755
No 127
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.53 E-value=2.3e-14 Score=126.81 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=96.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
..+|+|+|++|||||||++.+++.... .+ ..|.......+.+++..+.++||||..... ......++.+|
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~--~~-~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~~ 85 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDIS--HI-TPTQGFNIKSVQSQGFKLNVWDIGGQRKIR-------PYWRSYFENTD 85 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCE--EE-EEETTEEEEEEEETTEEEEEEECSSCGGGH-------HHHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cc-cCcCCeEEEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCCC
Confidence 358999999999999999999987421 11 112222233677889999999999964211 11223457899
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++++|...+... +.+..++..+ +..
T Consensus 86 ~~i~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~~------------ 112 (181)
T 1fzq_A 86 ILIYVIDSADRKRF-EETGQELTEL----------------------------------------LEE------------ 112 (181)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------TTC------------
T ss_pred EEEEEEECcCHHHH-HHHHHHHHHH----------------------------------------HhC------------
Confidence 99999998765321 1111111110 000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH---c-------CCCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA---R-------QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~---~-------~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|.||+|+......+.+. . ...++++||++|.|++++.+.+.+.+
T Consensus 113 ------------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 113 ------------EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp ------------GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred ------------hhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 011237999999999997543222221 1 11378999999999999999987754
No 128
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.4e-14 Score=128.39 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+|+|.+|||||||+|.|++.... . ...|.......+.+++..+.++||||..... ......++.+|+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 86 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV--H-TSPTIGSNVEEIVINNTRFLMWDIGGQESLR-------SSWNTYYTNTEF 86 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE--E-EECCSCSSCEEEEETTEEEEEEECCC----C-------GGGHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--c-CcCCCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCCE
Confidence 48999999999999999999976543 1 2335566677888999999999999974321 111233578999
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++|+|.+.+.. .+.+..++. .+..
T Consensus 87 ii~v~d~~~~~s-~~~~~~~~~--------------------------------------------~~~~---------- 111 (187)
T 1zj6_A 87 VIVVVDSTDRER-ISVTREELY--------------------------------------------KMLA---------- 111 (187)
T ss_dssp EEEEEETTCTTT-HHHHHHHHH--------------------------------------------HHHT----------
T ss_pred EEEEEeCCCHHH-HHHHHHHHH--------------------------------------------HHHh----------
Confidence 999999876532 111111111 1100
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCCh---hhHHHHHc---C----CCEEEecchhccchHHHHHHHHHHhC
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR---Q----PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~---~~~~~l~~---~----~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
. ......|+++|+||+|+... +++..... . ..++.+||+++.|++++.+.+.+.+.
T Consensus 112 --------~--~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 112 --------H--EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp --------S--GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred --------c--hhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0 00124799999999999753 22222211 1 14789999999999999999988774
No 129
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.53 E-value=1.2e-14 Score=130.00 Aligned_cols=151 Identities=18% Similarity=0.157 Sum_probs=97.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
..+|+|+|++|||||||+|.+++.... .. ..|+......+.+++..+.++||||..... ......++.+|
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 98 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNICFTVWDVGGQDKIR-------PLWRHYFQNTQ 98 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETTEEEEEEECC-----C-------TTHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 358999999999999999999876532 22 236666667788889999999999964311 11122357789
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++|+|...+.. .+.+..++..+ +..
T Consensus 99 ~iilv~D~~~~~s-~~~~~~~l~~~----------------------------------------~~~------------ 125 (192)
T 2b6h_A 99 GLIFVVDSNDRER-VQESADELQKM----------------------------------------LQE------------ 125 (192)
T ss_dssp EEEEEEETTCGGG-HHHHHHHHHHH----------------------------------------HTC------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHH----------------------------------------hcc------------
Confidence 9999999876532 11121211110 000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH---cC-------CCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA---RQ-------PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~---~~-------~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+......+.+. .. .+++++||+++.|++++.+.+.+.+
T Consensus 126 ------------~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 126 ------------DELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp ------------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred ------------cccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 001237999999999997542222221 10 1378999999999999999988765
No 130
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.53 E-value=3.4e-14 Score=127.59 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.+|.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-------LGVAFYRGA 81 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-------SCCGGGTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------hHHHHHhCC
Confidence 4899999999999999999998775545556667777777787776 5788999999543211 122345788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++.. +.....
T Consensus 82 d~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~~~--------- 111 (207)
T 1vg8_A 82 DCCVLVFDVTAPNTF-KTLDSWRDE----------------------------------------FLIQAS--------- 111 (207)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHHHC---------
T ss_pred cEEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHHhcc---------
Confidence 999999998765321 111111111 000000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh----hhHHHHHc---CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~----~~~~~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.......|+++|+||+|+... +....+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 112 ------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 112 ------------PRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp ------------CSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------cccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000124699999999998732 22333322 24589999999999999988886654
No 131
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.53 E-value=4.3e-15 Score=160.17 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCC---cccccccccchhhHhhcCce------------eeeccCCCCCCHHHHHHH---HHHhh-hCCcE
Q 015822 156 RQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQI---LHEYK-IHNAE 216 (399)
Q Consensus 156 ~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------------li~DEpts~LD~~~v~~l---l~~l~-~~~~~ 216 (399)
...+.+.|+.+|+ .+++++..|||||+||+.|| +++||||++||......+ ++.+. ...++
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 3467788999998 35889999999999999887 799999999998865555 44444 34599
Q ss_pred EEEcCCCCH
Q 015822 217 VLFREDATV 225 (399)
Q Consensus 217 v~vthd~~~ 225 (399)
|+++||+..
T Consensus 787 IvisHdl~~ 795 (842)
T 2vf7_A 787 IAVEHKMQV 795 (842)
T ss_dssp EEECCCHHH
T ss_pred EEEcCCHHH
Confidence 999999654
No 132
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.53 E-value=3e-15 Score=141.97 Aligned_cols=147 Identities=13% Similarity=0.087 Sum_probs=76.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCC---h
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS---S 140 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~---~ 140 (399)
.++|+|+||||||||+|+|+|...+ ..|.+.++|.++.. + .....+++..|....... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~-----------~~G~i~~~g~~i~~--~-----~~~~~i~~v~q~~~~~~~ltv~ 65 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS-----------RKASSWNREEKIPK--T-----VEIKAIGHVIEEGGVKMKLTVI 65 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------------CCC--C-----CSCCEEEESCC----CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-----------CCCccccCCcccCc--c-----eeeeeeEEEeecCCCcCCceEE
Confidence 7999999999999999999998765 67888777765421 0 011122333332211111 1
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce------eeeccCCCCCCHHHHHHHHHHhhhCC
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS------FNSTLPLTHVDEKLCYQILHEYKIHN 214 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia------li~DEpts~LD~~~v~~ll~~l~~~~ 214 (399)
|.+.+...... ....+.+...+.. -..+..+..||+||+||+.++ +++|||+.+||+.. .++++.+.
T Consensus 66 d~~~~g~~~~~-~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~--- 138 (270)
T 3sop_A 66 DTPGFGDQINN-ENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS--- 138 (270)
T ss_dssp CCCC--CCSBC-TTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---
T ss_pred echhhhhhccc-HHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---
Confidence 11111100000 0001111111110 012345678999999999887 88899999999876 33444332
Q ss_pred cEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHH
Q 015822 215 AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (399)
Q Consensus 215 ~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~ 257 (399)
. ..++|+|+||+|..+.++..
T Consensus 139 ---------------------~-~~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 139 ---------------------K-VVNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp ---------------------T-TSEEEEEETTGGGSCHHHHH
T ss_pred ---------------------h-cCcEEEEEeccccCCHHHHH
Confidence 1 16899999999988766543
No 133
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.53 E-value=2.8e-14 Score=123.61 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.+++........|.++.+.....+.++|. .+.++||||..... ......++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH-------ALGPIYYRDS 79 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHhccC
Confidence 48999999999999999999987654445566666666667777764 56778999954221 1112245788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+.. .+.+..++. .+.
T Consensus 80 d~~i~v~d~~~~~s-~~~~~~~~~--------------------------------------------~~~--------- 105 (170)
T 1z08_A 80 NGAILVYDITDEDS-FQKVKNWVK--------------------------------------------ELR--------- 105 (170)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH--------------------------------------------HHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHH--------------------------------------------HHH---------
Confidence 99999998876432 111222211 110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.. .....|+++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 106 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 106 ---------KM---LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp ---------HH---HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------Hh---cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 00 0123699999999998642 22333322 13478999999999999999887754
No 134
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.53 E-value=2.1e-14 Score=125.56 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.|++.. .+.+++.||.+.....+.++|. .+.++||||..... . .....++.+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----~---~~~~~~~~~ 81 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG----A---MREQYMRAG 81 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS----C---CHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH----H---HHHHHHhhC
Confidence 489999999999999999999863 4567888888877788888875 67889999954211 1 111234567
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+... ..+..++. .+++..
T Consensus 82 d~~i~v~d~~~~~s~-~~~~~~~~----------------------------------------~~~~~~---------- 110 (181)
T 2fn4_A 82 HGFLLVFAINDRQSF-NEVGKLFT----------------------------------------QILRVK---------- 110 (181)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHH----------------------------------------HHHHHH----------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHHH----------------------------------------HHHHhc----------
Confidence 888888887764321 11111111 111100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.....|+++|+||+|+.... ....+.. ...++++||+++.|++++.+.+.+.+
T Consensus 111 --------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 111 --------------DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp --------------TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 11246999999999986432 2223321 23488999999999999998887765
No 135
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.52 E-value=2.9e-14 Score=126.77 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+|+|++|||||||+|.|++...... ...|.......+...+..+.++||||..... ......++.+|+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~ 93 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNED--MIPTVGFNMRKITKGNVTIKLWDIGGQPRFR-------SMWERYCRGVSA 93 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEETTEEEEEEEECCSHHHH-------TTHHHHHTTCSE
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCc--cCCCCceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHHHccCCE
Confidence 5899999999999999999997654311 2234444555677889999999999964321 112223578999
Q ss_pred hHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCC
Q 015822 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (399)
Q Consensus 143 il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd 222 (399)
+++|+|...+... +.+..++.. ++..
T Consensus 94 ii~v~D~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------- 119 (188)
T 1zd9_A 94 IVYMVDAADQEKI-EASKNELHN----------------------------------------LLDK------------- 119 (188)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHH----------------------------------------HHTC-------------
T ss_pred EEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHhC-------------
Confidence 9999998764321 111111111 0000
Q ss_pred CCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH---c-------CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA---R-------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 223 ~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~---~-------~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
......|+++|+||+|+........+. . ...++.+||+++.|+++|.+.+.+.+.
T Consensus 120 -----------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 120 -----------PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp -----------GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred -----------cccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 001247999999999997532222211 1 113789999999999999999987653
No 136
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.52 E-value=1.7e-14 Score=126.10 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC---EeecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g---~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|++|||||||+|.|++........|.++.+.....+.++| ..+.++||||..... ......++.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 79 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG-------KMLDKYIYG 79 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC-------TTHHHHHTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc-------chhhHHHhh
Confidence 4899999999999999999998664323335555777788888887 689999999953211 112234578
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|...+... +.+..++. .+.
T Consensus 80 ~d~~i~v~d~~~~~s~-~~~~~~~~--------------------------------------------~i~-------- 106 (178)
T 2hxs_A 80 AQGVLLVYDITNYQSF-ENLEDWYT--------------------------------------------VVK-------- 106 (178)
T ss_dssp CSEEEEEEETTCHHHH-HTHHHHHH--------------------------------------------HHH--------
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHH--------------------------------------------HHH--------
Confidence 9999999998765321 11111111 110
Q ss_pred cCCCCHHHHHHHHhhcccccc-EEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 220 REDATVDDLIDVIEGNRKYMK-CVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p-~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.... .....| +++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+.
T Consensus 107 ----------~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 107 ----------KVSE-ESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp ----------HHHH-HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred ----------HHhc-ccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0000 001234 7999999998642 22333321 235899999999999999999987663
No 137
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.52 E-value=4.2e-14 Score=125.72 Aligned_cols=151 Identities=23% Similarity=0.212 Sum_probs=96.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC---------------------------------
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--------------------------------- 108 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--------------------------------- 108 (399)
..+|+|+|++|||||||+|+|++........|.++.+.....+.+++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 35899999999999999999999764433334444455555555555
Q ss_pred ------EeecccCccccccccccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhH
Q 015822 109 ------TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKK 182 (399)
Q Consensus 109 ------~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~k 182 (399)
..+.++||||..... ......++.+|++++|+|+..+... +.+..++
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~-~~~~~~~------------------- 139 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSNTL-DRAKTWV------------------- 139 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHHHH-HHHHHHH-------------------
T ss_pred cCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHH-HHHHHHH-------------------
Confidence 678899999953211 1122345788999999998765321 1111111
Q ss_pred hhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCC----hhhHHH
Q 015822 183 KTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG----IDDVDK 258 (399)
Q Consensus 183 qr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~----~~~~~~ 258 (399)
..+. .. ...|+++|+||+|... .++...
T Consensus 140 -------------------------~~i~----------------------~~-~~~piilv~NK~D~~~~~~~~~~~~~ 171 (208)
T 3clv_A 140 -------------------------NQLK----------------------IS-SNYIIILVANKIDKNKFQVDILEVQK 171 (208)
T ss_dssp -------------------------HHHH----------------------HH-SCCEEEEEEECTTCC-CCSCHHHHHH
T ss_pred -------------------------HHHH----------------------hh-CCCcEEEEEECCCcccccCCHHHHHH
Confidence 1111 00 1269999999999421 122333
Q ss_pred HHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 259 LAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 259 l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
+.+ ...++++||+++.|++++.+.+.+.+
T Consensus 172 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 172 YAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 322 23588999999999999988887654
No 138
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.52 E-value=2.6e-14 Score=123.46 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 76 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRNA 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhccC
Confidence 47999999999999999999987654444466666666677777764 68899999953211 1122345788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+... +.+..++ ..+..
T Consensus 77 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~~-------- 103 (170)
T 1ek0_A 77 QAALVVYDVTKPQSF-IKARHWV--------------------------------------------KELHE-------- 103 (170)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHH--------------------------------------------HHHHH--------
T ss_pred cEEEEEEecCChHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 999999988765321 1111111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh--------hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--------DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~--------~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+... +....+.. ...++++||+++.|++++.+.+.+.+
T Consensus 104 ----------~---~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 104 ----------Q---ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp ----------H---SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred ----------h---cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0123699999999998643 11222221 23588999999999999999887654
No 139
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=4.6e-14 Score=127.52 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.++.+.....+.++|. .+.++||||.... .......++.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~~ 99 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYYRSA 99 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHHhcC
Confidence 38999999999999999999987655555666777777788888884 6889999995321 11223456789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|.+.+.. .+.+..++. .+..
T Consensus 100 d~~i~v~D~~~~~s-~~~~~~~~~--------------------------------------------~i~~-------- 126 (201)
T 2ew1_A 100 NALILTYDITCEES-FRCLPEWLR--------------------------------------------EIEQ-------- 126 (201)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHH--------------------------------------------HHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHHH--------
Confidence 99999999876532 111111111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHH--cCCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~--~~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+... ++...+. ....++++||+++.|++++.+.+.+.+
T Consensus 127 -----------~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 127 -----------Y--ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp -----------H--SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0123699999999998632 2222222 124589999999999999988876654
No 140
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=5.7e-14 Score=122.99 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC-CCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~-vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|++|||||||+|.|++.... ....|.++.+.....+.++|. .+.++||||..... ......++.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 83 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYYRD 83 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHccC
Confidence 48999999999999999999987753 344577777777777788875 67889999954211 112234577
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|...+.. .+.+..++ ..+..
T Consensus 84 ~d~ii~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~------- 111 (180)
T 2g6b_A 84 AHALLLLYDVTNKAS-FDNIQAWL--------------------------------------------TEIHE------- 111 (180)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHHH-------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH-------
Confidence 899999999876532 11111111 11110
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
. .....|+++|+||+|+.... +...+.+ ..+++++||+++.|++++.+.+.+.+.
T Consensus 112 ------------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 112 ------------Y--AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp ------------H--SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------h--CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 01236999999999987432 2233321 246899999999999999999887653
No 141
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.52 E-value=1.8e-14 Score=127.80 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=98.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
..+|+|+|++|||||||+|.+++.... ...| |.......+.+++..+.++||||...... .....++.+|
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~d 91 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRP-------YWRCYFSDTD 91 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSCC-------CCSSSSTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHH-------HHHHHhhcCC
Confidence 358999999999999999999875532 2222 44556677888999999999999643211 1123457899
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++|+|...+..- +.+..++.. ++ ..
T Consensus 92 ~ii~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~---~~--------- 118 (189)
T 2x77_A 92 AVIYVVDSTDRDRM-GVAKHELYA----------------------------------------LL---DE--------- 118 (189)
T ss_dssp EEEEEEETTCCTTH-HHHHHHHHH----------------------------------------HH---TC---------
T ss_pred EEEEEEeCCCHHHH-HHHHHHHHH----------------------------------------HH---hh---------
Confidence 99999998765321 111111111 00 00
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHHH---c--C-----CCEEEecchhccchHHHHHHHHHHh
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA---R--Q-----PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l~---~--~-----~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+......+.+. . . .+++++||+++.|++++.+.+.+.+
T Consensus 119 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 119 ------------DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp ------------STTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------hhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 001236999999999997542222221 1 0 1378999999999999999887765
No 142
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.51 E-value=2.2e-14 Score=125.15 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.+|.+.....+.+++. .+.++||||..... ......++.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 87 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDS 87 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGSHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH-------HHHHHHhcCC
Confidence 48999999999999999999987655556678888888888888884 68899999954321 1112235678
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+.. .+.+..++ ..+.
T Consensus 88 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~--------- 113 (179)
T 2y8e_A 88 TVAVVVYDITNTNS-FHQTSKWI--------------------------------------------DDVR--------- 113 (179)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 88999988876432 11111111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHH--cCCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~--~~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.. .....|+++|+||+|+.... +...+. ....++++||+++.|++++.+.+.+.+
T Consensus 114 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 114 ---------TE---RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp ---------HH---HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred ---------Hh---cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 01236999999999986432 222221 123588999999999999999988755
No 143
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.51 E-value=2.1e-14 Score=123.65 Aligned_cols=152 Identities=21% Similarity=0.196 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+++|++|||||||+|.|++.. ....++.|+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 76 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc-cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HHHHHHhhcC
Confidence 479999999999999999999865 3466777887777777888875 68899999954211 1112234567
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+.. .+.+..++. .+.
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~--------------------------------------------~i~--------- 102 (168)
T 1u8z_A 77 EGFLCVFSITEMES-FAATADFRE--------------------------------------------QIL--------- 102 (168)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH--------------------------------------------HHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHH---------
Confidence 88888888776432 111111111 110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
... .....|+++|+||+|+.... +...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 103 ---------~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 103 ---------RVK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ---------HHH--CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------Hhc--CCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 000 01237999999999986432 2222221 23589999999999999998887654
No 144
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=126.85 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.|++........|.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 99 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------SITSAYYRSA 99 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH-------HHHHHHhcCC
Confidence 4799999999999999999998775545557777777778888887 468899999953211 1122335678
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++. .+..+
T Consensus 100 d~iilV~D~~~~~s~-~~~~~~~~-----------------------------------------~i~~~---------- 127 (192)
T 2il1_A 100 KGIILVYDITKKETF-DDLPKWMK-----------------------------------------MIDKY---------- 127 (192)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHH-----------------------------------------HHHHH----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHH-----------------------------------------HHHHh----------
Confidence 888899888764321 11111111 01100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc---CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.....|+++|+||+|+... ++...+.+ ...++.+||+++.|++++.+.+.+.+
T Consensus 128 --------------~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 128 --------------ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp --------------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0123699999999998643 22333332 23478999999999999998887654
No 145
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=7.4e-14 Score=124.33 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||++.+++.. ...+++.|+.+.....+.++| ..+.++|+||..... ......++.+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~ 90 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA-FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-------RLRPLSYPMT 90 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST-------TTGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh-------HHHHHhcCCC
Confidence 489999999999999999999864 346677777777667777777 568889999964321 1122346789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.........++ ..+.
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~--------------------------------------------~~~~--------- 117 (194)
T 2atx_A 91 DVFLICFSVVNPASFQNVKEEWV--------------------------------------------PELK--------- 117 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHHHHHHHHHHH--------------------------------------------HHHH---------
Confidence 99999999876532111100111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----------------hHHHHH---cCCCEEEecchhccchHHHH
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----------------DVDKLA---RQPNSVVISCNLKLNLDRLL 280 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----------------~~~~l~---~~~~~i~vSa~~~~gl~~L~ 280 (399)
......|+++|+||+|+.... +...+. ....++.+||+++.|++++.
T Consensus 118 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 184 (194)
T 2atx_A 118 -------------EYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184 (194)
T ss_dssp -------------HHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHH
T ss_pred -------------HhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHH
Confidence 001136999999999997431 111221 12368999999999999999
Q ss_pred HHHHHHh
Q 015822 281 ARMWEEM 287 (399)
Q Consensus 281 ~~i~~~l 287 (399)
+.+.+.+
T Consensus 185 ~~l~~~i 191 (194)
T 2atx_A 185 DEAIIAI 191 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 146
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.51 E-value=7.7e-14 Score=120.65 Aligned_cols=150 Identities=18% Similarity=0.223 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC--CCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~--vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~ 138 (399)
.+|+|+|++|||||||+|.|++.... ..+.+++|.. ...+.+++ ..+.++||||..... ......++
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~ 77 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM--TKTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYR 77 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEE--EEEEEECCeEEEEEEEcCCCchhhh-------cccHhhCc
Confidence 48999999999999999999987633 2333444433 33445555 568899999964211 11223457
Q ss_pred ChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEE
Q 015822 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (399)
Q Consensus 139 ~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~ 218 (399)
.+|++++++|...+... +.+..++ ..+..
T Consensus 78 ~~~~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~l~~------ 106 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETF-STLKNWV--------------------------------------------RELRQ------ 106 (170)
T ss_dssp TCSEEEEEEETTCHHHH-HHHHHHH--------------------------------------------HHHHH------
T ss_pred CCCEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHHH------
Confidence 78999999888765321 1111111 11110
Q ss_pred EcCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 219 vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|.||+|+.... ....+.+ ...++++||+++.|+++|.+.+.+.+
T Consensus 107 ---------------~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 107 ---------------HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp ---------------HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred ---------------hCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 011236899999999986432 2233321 23488999999999999999988765
No 147
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.51 E-value=3e-15 Score=134.35 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.+|.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 106 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 106 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC-------CCSCC--CCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHhhcC
Confidence 4899999999999999999999876666778889999999999988 468889999953211 1122346789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.. .+.+..++.. +..
T Consensus 107 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~-------- 133 (199)
T 3l0i_B 107 HGIIVVYDVTDQES-FNNVKQWLQE--------------------------------------------IDR-------- 133 (199)
T ss_dssp SEEEECC-CCCSHH-HHHHHHHHHH--------------------------------------------HHS--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH--------
Confidence 99999999877532 1222222211 110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+.... ....+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 134 -------------~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 134 -------------YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp -------------CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred -------------hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 001136999999999987432 2223322 23588999999999999999887654
No 148
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.51 E-value=7.1e-14 Score=122.47 Aligned_cols=153 Identities=15% Similarity=0.152 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++|+||..... ......++.+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 85 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYRGA 85 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-------hhhHHHhccC
Confidence 4899999999999999999998765444445555555556667765 468899999954211 1122345778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+.. .+.+..++ ..+..
T Consensus 86 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~~~-------- 112 (181)
T 2efe_B 86 AAAIIVFDVTNQAS-FERAKKWV--------------------------------------------QELQA-------- 112 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 99999999876432 11121111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
......|+++|+||+|+.... +...+.+ ..+++++||+++.|+++|.+.+.+.+.
T Consensus 113 -------------~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 113 -------------QGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp -------------HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred -------------hcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 001236899999999986432 2333322 134889999999999999999988663
No 149
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.51 E-value=9e-14 Score=120.07 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=85.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|++|||||||+|.+++... .+.+.+++|.+ ..+.+++. .+.++|+||...... .....++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRW-------LPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchh-------hhhhhhhh
Confidence 4799999999999999999998774 56677888875 34566664 467889998643211 11123467
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|.+++++|...+.. .+.+..++. .+...
T Consensus 73 ~~~~i~v~d~~~~~s-~~~~~~~~~--------------------------------------------~~~~~------ 101 (166)
T 3q72_A 73 GDAYVIVYSVTDKGS-FEKASELRV--------------------------------------------QLRRA------ 101 (166)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHHHH--------------------------------------------HHHHC------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHHHh------
Confidence 888888888876532 122221111 11000
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+.... ....+.. ..+++++||+++.|++++.+.+.+.+
T Consensus 102 --------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 102 --------------RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp --------------C---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred --------------cCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 001236999999999987432 1222221 23578999999999999999887765
No 150
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.51 E-value=3.8e-14 Score=126.13 Aligned_cols=152 Identities=19% Similarity=0.167 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.++.+.....+.+++. .+.++||||..... ......++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 94 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR-------SITRSYYRGA 94 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTS-------CCCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhh-------hhHHHHhccC
Confidence 38999999999999999999987655445566677777778888874 78899999954211 1122345778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.. .+.+..++ ..+..
T Consensus 95 d~ii~v~d~~~~~s-~~~~~~~l--------------------------------------------~~i~~-------- 121 (191)
T 2a5j_A 95 AGALLVYDITRRET-FNHLTSWL--------------------------------------------EDARQ-------- 121 (191)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 99999999876432 11111111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+... ++...+.. ...++.+||+++.|++++.+.+.+.+
T Consensus 122 -------------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 122 -------------HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp -------------HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------hcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00123699999999998642 22233321 23578999999999999988876644
No 151
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.50 E-value=5e-14 Score=123.85 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||++.+++... ...+..|+.+.....+.+++.. +.++||||..... ......++.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 77 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQT 77 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-------TTGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHH-------HHHHHhccCC
Confidence 4899999999999999999997543 3556667766666677777765 5589999974321 1112245789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.........++ ..+.
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~--------------------------------------------~~~~--------- 104 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWY--------------------------------------------PEVR--------- 104 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHH--------------------------------------------HHHH---------
T ss_pred cEEEEEEECCChhhHHHHHHHHH--------------------------------------------HHHH---------
Confidence 99999999876532211100111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChhh-----------------HHHHH-cC--CCEEEecchhccchHHHH
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----------------VDKLA-RQ--PNSVVISCNLKLNLDRLL 280 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-----------------~~~l~-~~--~~~i~vSa~~~~gl~~L~ 280 (399)
......|+++|+||+|+..... ...+. .. .+++++||+++.|+++|.
T Consensus 105 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 105 -------------HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp -------------HHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred -------------HhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHH
Confidence 0011369999999999864321 11121 11 258999999999999999
Q ss_pred HHHHHHh
Q 015822 281 ARMWEEM 287 (399)
Q Consensus 281 ~~i~~~l 287 (399)
+.+.+.+
T Consensus 172 ~~l~~~~ 178 (186)
T 1mh1_A 172 DEAIRAV 178 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 152
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=127.71 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.++.+.....+.++| ..+.++||||..... ......++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 98 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR-------SVTRSYYRGA 98 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHS-------CCCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHH-------HHHHHHhccC
Confidence 4899999999999999999998776555567777777778888888 578999999964321 1122345788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++ ..+..
T Consensus 99 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~~-------- 125 (200)
T 2o52_A 99 AGALLVYDITSRETY-NSLAAWL--------------------------------------------TDART-------- 125 (200)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 999999998765321 1111111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+.... +...+.+ ...++++||+++.|++++.+.+.+.+
T Consensus 126 ----------~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 126 ----------L---ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp ----------H---TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----------h---cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 01236999999999986322 2222221 23478999999999999988876654
No 153
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.50 E-value=3.4e-14 Score=128.26 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=61.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee--cccCccccccccccCcccchhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i--~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
..+|+|+|.+|||||||++.+++.. .+..++.||.+.....+.+++..+ .++||||..... ......++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQ 101 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC-CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-------TTGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC-CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhcc
Confidence 3689999999999999999999653 346677888887777788877654 499999974321 122234678
Q ss_pred hhhhHHHHhcCCcH
Q 015822 140 SDIVLMVLDASKSE 153 (399)
Q Consensus 140 ~d~il~v~d~~~~~ 153 (399)
+|++++|+|...+.
T Consensus 102 ~d~~i~v~d~~~~~ 115 (204)
T 4gzl_A 102 TDVFLICFSLVSPA 115 (204)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CCEEEEEEECCCHH
Confidence 99999999987653
No 154
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.50 E-value=3.3e-14 Score=127.59 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.+++.......+|++|.+.....+.++|.. +.++||+|..... .... ...++.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----~~~~--~~~~~~~ 97 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG----GWLR--DHCLQTG 97 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG----HHHH--HHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch----hhhH--HHhhccC
Confidence 489999999999999999999876666677889999888999998865 5667999863211 0001 1124567
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.. .+.+..++ ..+..
T Consensus 98 d~~ilv~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 124 (195)
T 3cbq_A 98 DAFLIVFSVTDRRS-FSKVPETL--------------------------------------------LRLRA-------- 124 (195)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 88888888766432 11111111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. . .....|+++|.||+|+... ++...+.+ ...++.+||+++.|++++.+.+.+.+
T Consensus 125 ----------~-~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 125 ----------G-R-PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp ----------H-S-TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ----------h-c-CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 0 0 0124799999999998643 22333322 13478999999999999999887765
No 155
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=127.10 Aligned_cols=152 Identities=21% Similarity=0.197 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++.. .+.+++.||.+.....+.+++. .+.++||||..... ......++.+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HHHHHHHhhC
Confidence 489999999999999999999865 3567888888888888888885 68899999953211 1111234567
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+.. .+.+..++. .+.
T Consensus 87 ~~~i~v~d~~~~~s-~~~~~~~~~--------------------------------------------~i~--------- 112 (206)
T 2bov_A 87 EGFLCVFSITEMES-FAATADFRE--------------------------------------------QIL--------- 112 (206)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH--------------------------------------------HHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHH---------
Confidence 88888888766432 111111111 110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
... .....|+++|+||+|+.... +...+.+ ..+++++||+++.|+++|.+.+.+.+
T Consensus 113 ---------~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 113 ---------RVK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp ---------HHT--TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------Hhc--CCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 01247999999999986432 2222221 23589999999999999988887655
No 156
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.50 E-value=8.2e-14 Score=127.39 Aligned_cols=153 Identities=21% Similarity=0.162 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|.++.+.....+.++| ..+.++||||..... ......++.+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR-------AITSAYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT-------CCCGGGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh-------hhHHHHhccC
Confidence 4899999999999999999998775555557777777777888888 578999999954211 1122346788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++ ..+..
T Consensus 87 d~vilV~D~~~~~s~-~~~~~~l--------------------------------------------~~i~~-------- 113 (223)
T 3cpj_B 87 VGALIVYDISKSSSY-ENCNHWL--------------------------------------------SELRE-------- 113 (223)
T ss_dssp CEEEEEEC-CCHHHH-HHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 999999988765321 1122211 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
. .....|+++|+||+|+... ++...+.+ ...++++||+++.|++++.+.+.+.+.
T Consensus 114 ----------~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 114 ----------N---ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp ----------H---CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred ----------h---CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0113699999999998642 22333322 234788999999999999999887664
No 157
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.50 E-value=6.1e-14 Score=123.88 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeee-ceEEEECC-----------EeecccCccccccccccCcccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYND-----------TKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~-~G~i~~~g-----------~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+|+|+|++|||||||+|.|++........|..+.+.. ...+.+++ ..+.++||||.....
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------- 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR------- 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH-------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH-------
Confidence 48999999999999999999986543232333333333 33455553 478899999964311
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHh
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEY 210 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l 210 (399)
......++.+|++++|+|...+... +.+..++ ..+
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~i 119 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSF-LNVRNWI--------------------------------------------SQL 119 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHH
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHH
Confidence 1233456789999999998765321 1111111 111
Q ss_pred hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHH
Q 015822 211 KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARM 283 (399)
Q Consensus 211 ~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i 283 (399)
.. .. .....|+++|+||+|+... +....+.. ..+++++||+++.|++++.+.+
T Consensus 120 ~~------------------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 120 QM------------------HA--YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEML 179 (195)
T ss_dssp HH------------------HS--SSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred HH------------------hc--CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 10 00 0124799999999998642 22333321 2368999999999999998888
Q ss_pred HHHh
Q 015822 284 WEEM 287 (399)
Q Consensus 284 ~~~l 287 (399)
.+.+
T Consensus 180 ~~~~ 183 (195)
T 3bc1_A 180 LDLI 183 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 158
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.50 E-value=8.2e-14 Score=123.64 Aligned_cols=152 Identities=19% Similarity=0.175 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR-------TITTAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC-------CSGGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh-------hhHHHhccCC
Confidence 3899999999999999999998764433334444444445566665 468899999953211 1223346789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.. .+.+..++ ..+..
T Consensus 96 d~ii~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 122 (189)
T 2gf9_A 96 MGFLLMYDIANQES-FAAVQDWA--------------------------------------------TQIKT-------- 122 (189)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 99999999876432 11111111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+... ++...+.+ ...++++||+++.|+++|.+.+.+.+
T Consensus 123 ----------~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 123 ----------Y---SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ----------H---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------h---cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0123699999999998643 22333322 23589999999999999998887654
No 159
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.50 E-value=4.4e-14 Score=121.86 Aligned_cols=152 Identities=17% Similarity=0.150 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.+++... ...++.|+.+.....+.+++ ..+.++|+||..... ......++.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT-------AMRDLYMKNG 75 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST-------THHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhccC
Confidence 4799999999999999999998543 34555565555555555554 467889999954211 1111234567
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+.. .+.+..++.. ++..
T Consensus 76 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~~----------- 103 (167)
T 1c1y_A 76 QGFALVYSITAQST-FNDLQDLREQ----------------------------------------ILRV----------- 103 (167)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh-----------
Confidence 88888888766432 1111111110 0000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHH-c--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA-R--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~-~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|.++|+||+|+... ++...+. . ..+++++||+++.|+++|.+.+.+.+
T Consensus 104 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 104 -----------K--DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp -----------H--CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------h--CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 0 1124799999999998643 2233332 2 23589999999999999999988765
No 160
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.49 E-value=5.6e-14 Score=123.44 Aligned_cols=152 Identities=22% Similarity=0.225 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++.. ....++.||.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC-CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHHHHHhccC
Confidence 489999999999999999999865 3467788888877777888875 68899999954211 1112234567
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+.. .+.+..++.. ++.
T Consensus 91 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 117 (187)
T 2a9k_A 91 EGFLCVFSITEMES-FAATADFREQ----------------------------------------ILR------------ 117 (187)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 88888888765432 1111111111 000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.. .....|+++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 118 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 118 ----------VK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp ----------HH--CCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------hc--CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00 0123699999999998642 22222322 13478999999999999998887654
No 161
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.49 E-value=2.8e-14 Score=122.71 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.+++... ...++.|+.+.....+.+++.. +.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTF-IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMRDLYIKNG 75 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-cccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhccC
Confidence 4799999999999999999987653 2455666666666777787765 7899999953211 1111234567
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+... +.+..++. .+++.
T Consensus 76 ~~~i~v~d~~~~~s~-~~~~~~~~----------------------------------------~i~~~----------- 103 (167)
T 1kao_A 76 QGFILVYSLVNQQSF-QDIKPMRD----------------------------------------QIIRV----------- 103 (167)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHH----------------------------------------HHHHH-----------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHHH----------------------------------------HHHHh-----------
Confidence 788888887654321 11111111 01100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|.++|+||+|+.... +...+.+ ..+++++||+++.|+++|.+.+.+.+
T Consensus 104 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 104 -----------K--RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp -----------T--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred -----------c--CCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 0 01237999999999986432 2222221 23589999999999999999887754
No 162
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=9.7e-14 Score=123.08 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 88 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR-------TLTPSYYRGA 88 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC-------CSHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHHHhccC
Confidence 4899999999999999999998765444445555566666777776 467889999954321 1122345789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... ..+..++. .+...
T Consensus 89 d~ii~v~d~~~~~s~-~~~~~~~~--------------------------------------------~i~~~------- 116 (195)
T 1x3s_A 89 QGVILVYDVTRRDTF-VKLDNWLN--------------------------------------------ELETY------- 116 (195)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHHH--------------------------------------------HHTTC-------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHH--------------------------------------------HHHHh-------
Confidence 999999998765321 11112211 11100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|.++|+||+|+... ++...+.. ...++++||+++.|++++.+.+.+.+
T Consensus 117 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 117 -------------CTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp -------------CSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------cCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 00123699999999998532 22223322 23478999999999999999887765
No 163
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.49 E-value=5.6e-14 Score=122.27 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|++|||||||+|.|++... .+.+.+++| .....+.++|. .+.++||||..... ........++.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~-----~~~~~~~~~~~ 77 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLD-----KSWSQESCLQG 77 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC------------CHHHHHTTTS
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccc-----hhhhHHhhccc
Confidence 4899999999999999999999764 333444444 34556777775 57899999964310 00111223567
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|.+++++|...+.. .+.+..++ ..+...
T Consensus 78 ~~~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~l~~~------ 106 (175)
T 2nzj_A 78 GSAYVIVYSIADRGS-FESASELR--------------------------------------------IQLRRT------ 106 (175)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHHC------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHHh------
Confidence 888888888776432 11111111 111100
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHH-c-CCCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA-R-QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~-~-~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+.... +...+. . ..+++++||++|.|+++|.+.+.+.+
T Consensus 107 --------------~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 107 --------------HQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp --------------C----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------hccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 001136999999999997432 222222 1 13589999999999999998887755
No 164
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.49 E-value=6.7e-15 Score=144.66 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=36.7
Q ss_pred ccEEEEEecCCCCChhh----HHHHH-----------c-CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 239 MKCVYVYNKIDVIGIDD----VDKLA-----------R-QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~~----~~~l~-----------~-~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.|.++|+||+|+..... ...+. . .++++++||.++.|+++|.+.|.+.+.
T Consensus 213 ~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 213 MADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp SCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 47899999999875332 12221 0 245789999999999999999987664
No 165
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.49 E-value=4.1e-14 Score=128.42 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC------------CEeecccCccccccccccCcccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN------------DTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~------------g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+|+|+|++|||||||+|.|++........|.++.+.....+.++ +..+.++||||.....
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------- 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR------- 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH-------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH-------
Confidence 389999999999999999999876543333444445555566665 3578999999954211
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHh
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEY 210 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l 210 (399)
......++.+|++++|+|...+.. .+.+..++..+
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s-~~~~~~~l~~i-------------------------------------------- 133 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQS-FLNVRNWMSQL-------------------------------------------- 133 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHH-HHHHHHHHHTC--------------------------------------------
T ss_pred hHHHHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHH--------------------------------------------
Confidence 122234678999999999876432 22222222211
Q ss_pred hhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHH
Q 015822 211 KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARM 283 (399)
Q Consensus 211 ~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i 283 (399)
... ......|+++|+||+|+... ++...+.+ ...++++||+++.|+++|.+.+
T Consensus 134 ~~~--------------------~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 134 QAN--------------------AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp CCC--------------------CTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred HHh--------------------cCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHH
Confidence 000 00123699999999998642 22333322 2358999999999999998887
Q ss_pred HHHh
Q 015822 284 WEEM 287 (399)
Q Consensus 284 ~~~l 287 (399)
.+.+
T Consensus 194 ~~~i 197 (217)
T 2f7s_A 194 LDLI 197 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 166
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.49 E-value=5.6e-14 Score=143.81 Aligned_cols=149 Identities=20% Similarity=0.281 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-------CCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhcc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-------SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA 135 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-------~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~ 135 (399)
..|+++|.+|+|||||+++|++.. .+.+..+++|++.....+.+++..+.++||||... +......
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-------~~~~~~~ 92 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------LIRAVVS 92 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------HHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-------HHHHHHH
Confidence 489999999999999999999977 34456789999999889999999999999999642 2234445
Q ss_pred ccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCc
Q 015822 136 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (399)
Q Consensus 136 ~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~ 215 (399)
.+..+|++++++|+......... +.+ .+++.
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~--e~l-----------------------------------------~~~~~------ 123 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTG--EHM-----------------------------------------LILDH------ 123 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHH--HHH-----------------------------------------HHHHH------
T ss_pred HHhhCCEEEEEEecCCCccHHHH--HHH-----------------------------------------HHHHH------
Confidence 66889999999998653111100 000 00000
Q ss_pred EEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHH-------HH-Hc-----CCCEEEecchhccchHHHHHH
Q 015822 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-------KL-AR-----QPNSVVISCNLKLNLDRLLAR 282 (399)
Q Consensus 216 ~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~-------~l-~~-----~~~~i~vSa~~~~gl~~L~~~ 282 (399)
...|.++|+||+|+.+.+..+ .+ .. ..+++++||.+|.|+++|++.
T Consensus 124 ---------------------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~ 182 (482)
T 1wb1_A 124 ---------------------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNL 182 (482)
T ss_dssp ---------------------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHH
T ss_pred ---------------------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHH
Confidence 125779999999998654322 11 11 246899999999999999999
Q ss_pred HHHHhC
Q 015822 283 MWEEMG 288 (399)
Q Consensus 283 i~~~l~ 288 (399)
|.+.+.
T Consensus 183 L~~~i~ 188 (482)
T 1wb1_A 183 IITTLN 188 (482)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 988654
No 167
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.49 E-value=9.2e-14 Score=120.01 Aligned_cols=152 Identities=14% Similarity=0.151 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++|+||..... ......++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYRGA 79 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhccCC
Confidence 4899999999999999999997653211122222223334455554 568899999954211 1122345788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+.. .+.+..++. .+..
T Consensus 80 d~~i~v~d~~~~~s-~~~~~~~~~--------------------------------------------~~~~-------- 106 (170)
T 1r2q_A 80 QAAIVVYDITNEES-FARAKNWVK--------------------------------------------ELQR-------- 106 (170)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH--------------------------------------------HHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHHH--------
Confidence 99999998876532 111111111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|.||+|+... ++...+.. ...++++||+++.|+++|.+.|.+.+
T Consensus 107 -------------~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 107 -------------QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp -------------HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred -------------hcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00123689999999998642 22233321 23478999999999999999998755
No 168
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=5.8e-14 Score=125.18 Aligned_cols=152 Identities=19% Similarity=0.174 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC--CCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++... ...+.+++|.......+...+..+.++||||..... ......++.+
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 96 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH-------SLAPMYYRGS 96 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-------hhhHHhhccC
Confidence 4899999999999999999998763 344445555443322222234578899999954211 1122345778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++ ..+..
T Consensus 97 d~iilV~d~~~~~s~-~~~~~~~--------------------------------------------~~i~~-------- 123 (192)
T 2fg5_A 97 AAAVIVYDITKQDSF-YTLKKWV--------------------------------------------KELKE-------- 123 (192)
T ss_dssp SEEEEEEETTCTHHH-HHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 999999988765321 1112111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHcC--CCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~~--~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+... ++...+.+. ..++++||+++.|+++|.+.+.+.+
T Consensus 124 -------------~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 124 -------------HGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp -------------HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred -------------hCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 00123699999999998632 223333322 3478999999999999999998865
No 169
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.48 E-value=1.6e-13 Score=123.10 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR-------TITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc-------chHHHhhcCC
Confidence 3899999999999999999998764333334334444445566665 468899999964321 1223345778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.. .+.+..++ ..+..
T Consensus 82 d~ii~v~d~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 108 (203)
T 1zbd_A 82 MGFILMYDITNEES-FNAVQDWS--------------------------------------------TQIKT-------- 108 (203)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 99999999876532 11121111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+.... ....+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 109 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 109 -------------YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp -------------HSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -------------hcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 001236999999999987432 2223321 13589999999999999888776644
No 170
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.48 E-value=6.8e-14 Score=125.98 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.|++........|.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 102 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR-------TITQSYYRSA 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGH-------HHHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHHhhC
Confidence 4899999999999999999997664322233334556667788887 478899999964211 1122345789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.. .+.+..++ ..+..
T Consensus 103 d~iilv~D~~~~~s-~~~~~~~~--------------------------------------------~~i~~-------- 129 (201)
T 2hup_A 103 NGAILAYDITKRSS-FLSVPHWI--------------------------------------------EDVRK-------- 129 (201)
T ss_dssp SEEEEEEETTBHHH-HHTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 99999998876432 11111111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc-C-C-CEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR-Q-P-NSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~-~-~-~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+... ++...+.+ . . .++.+||+++.|++++.+.+.+.+
T Consensus 130 ----------~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 130 ----------Y---AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp ----------H---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------h---cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0123699999999998642 22333322 1 2 578999999999999998887755
No 171
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.48 E-value=7.9e-14 Score=126.79 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.|++... ...++.|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 106 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD-------RLRPLFYPDA 106 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHHhccC
Confidence 4899999999999999999998653 345666776666677788775 57889999954211 1112235789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.........++ ..+.
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~--------------------------------------------~~~~--------- 133 (214)
T 2j1l_A 107 SVLLLCFDVTSPNSFDNIFNRWY--------------------------------------------PEVN--------- 133 (214)
T ss_dssp EEEEEEEETTCHHHHHHHHHTHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECcCHHHHHHHHHHHH--------------------------------------------HHHH---------
Confidence 99999999876532111100111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChhh-----------------HHHHH-cC--CCEEEecchhccchHHHH
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----------------VDKLA-RQ--PNSVVISCNLKLNLDRLL 280 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-----------------~~~l~-~~--~~~i~vSa~~~~gl~~L~ 280 (399)
......|+++|+||+|+..... ...+. .. ..++++||+++.|++++.
T Consensus 134 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~ 200 (214)
T 2j1l_A 134 -------------HFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200 (214)
T ss_dssp -------------HHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred -------------HhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 0012369999999999875421 12222 11 258999999999999999
Q ss_pred HHHHHHh
Q 015822 281 ARMWEEM 287 (399)
Q Consensus 281 ~~i~~~l 287 (399)
+.+.+.+
T Consensus 201 ~~l~~~~ 207 (214)
T 2j1l_A 201 QEAAEVA 207 (214)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 172
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=7.5e-14 Score=126.08 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.|++.... ..+..|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 97 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCT-------TTGGGGCTTC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHhhcCCC
Confidence 48999999999999999999986643 34545555555556777774 67889999964321 1122345789
Q ss_pred hhhHHHHhcCCc
Q 015822 141 DIVLMVLDASKS 152 (399)
Q Consensus 141 d~il~v~d~~~~ 152 (399)
|++++|+|...+
T Consensus 98 d~~i~v~d~~~~ 109 (207)
T 2fv8_A 98 DVILMCFSVDSP 109 (207)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999888764
No 173
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.48 E-value=2.8e-13 Score=120.01 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+++|.+|||||||+|.|++.. ....++.||.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC-CccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHhhCcC
Confidence 489999999999999999999764 3456777887777778888875 48889999954211 1112345778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...... .+.+..++.. +..+
T Consensus 94 d~~i~v~d~~~~~s-~~~~~~~~~~-----------------------------------------i~~~---------- 121 (190)
T 3con_A 94 EGFLCVFAINNSKS-FADINLYREQ-----------------------------------------IKRV---------- 121 (190)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH-----------------------------------------HHHH----------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH-----------------------------------------HHHH----------
Confidence 88888888766432 1111111111 0000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+... ++...+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 122 -----------~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 122 -----------K--DSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp -----------H--TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------h--CCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0123699999999998642 23333322 23689999999999999998887765
No 174
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.48 E-value=4.5e-14 Score=152.93 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=60.3
Q ss_pred HHHHHHHHcCC---cccccccccchhhHhhcCce------------eeeccCCCCCCHHHHHHHHHHh---h-hCCcEEE
Q 015822 158 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEY---K-IHNAEVL 218 (399)
Q Consensus 158 ~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------------li~DEpts~LD~~~v~~ll~~l---~-~~~~~v~ 218 (399)
...+.|+.+|+ .+++++..|||||+||+.|| +++||||++||......+++.+ . ...++|+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678899998 46789999999999999887 6899999999998655555444 3 3459999
Q ss_pred EcCCCCHHHHHHHHhhccccccEEEEE
Q 015822 219 FREDATVDDLIDVIEGNRKYMKCVYVY 245 (399)
Q Consensus 219 vthd~~~~~~~~~i~~~~~~~p~iiv~ 245 (399)
+|||+.... ....++++
T Consensus 904 isHdl~~i~----------~aDrIivL 920 (972)
T 2r6f_A 904 IEHNLDVIK----------TADYIIDL 920 (972)
T ss_dssp ECCCHHHHT----------TCSEEEEE
T ss_pred EcCCHHHHH----------hCCEEEEE
Confidence 999975422 24567777
No 175
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.47 E-value=3e-14 Score=142.54 Aligned_cols=61 Identities=5% Similarity=-0.106 Sum_probs=45.9
Q ss_pred cchhhHhhcCce-----------eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHHhhccccccEE
Q 015822 177 IYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCV 242 (399)
Q Consensus 177 LS~g~kqr~~ia-----------li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i~~~~~~~p~i 242 (399)
||+||+||+.|| |++||||++||......+++.+. ...++|+|||+..+.+ ....+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~----------~~d~i 365 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA----------RAHHH 365 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT----------TCSEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh----------hcCeE
Confidence 699999999887 78899999999987666666554 2358999999964322 13556
Q ss_pred EEEec
Q 015822 243 YVYNK 247 (399)
Q Consensus 243 iv~NK 247 (399)
+++.|
T Consensus 366 ~~l~k 370 (415)
T 4aby_A 366 YKVEK 370 (415)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 67754
No 176
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.47 E-value=3.5e-14 Score=124.59 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=88.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
..+|+|+|++|||||||++.+++.. ...+++.|+.+.....+.+++. .+.++||||..... ......++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 79 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT-FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-------RLRPLSYRG 79 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC-CC----------CBCCCC-------CEEECCCC-CTTT-------TTGGGGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-------hhHHhhccC
Confidence 3589999999999999999999765 3456666666555555556654 45589999954211 112234578
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++++|...+..... +.. .++..+.
T Consensus 80 ~d~~i~v~d~~~~~s~~~-~~~-------------------------------------------~~~~~~~-------- 107 (182)
T 3bwd_D 80 ADVFILAFSLISKASYEN-VSK-------------------------------------------KWIPELK-------- 107 (182)
T ss_dssp CSEEEEEEETTCHHHHHH-HHH-------------------------------------------THHHHHH--------
T ss_pred CCEEEEEEECCCHHHHHH-HHH-------------------------------------------HHHHHHH--------
Confidence 899999999876532211 110 0111110
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh---------------HHHHH---cCCCEEEecchhccchHHHHH
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---------------VDKLA---RQPNSVVISCNLKLNLDRLLA 281 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~---------------~~~l~---~~~~~i~vSa~~~~gl~~L~~ 281 (399)
......|+++|+||+|+..... ...+. ....++++||+++.|++++.+
T Consensus 108 --------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (182)
T 3bwd_D 108 --------------HYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFD 173 (182)
T ss_dssp --------------HHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHH
T ss_pred --------------HhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHH
Confidence 0011369999999999864322 12222 123588999999999999999
Q ss_pred HHHHHh
Q 015822 282 RMWEEM 287 (399)
Q Consensus 282 ~i~~~l 287 (399)
.+.+.+
T Consensus 174 ~l~~~i 179 (182)
T 3bwd_D 174 AAIRVV 179 (182)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
No 177
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.47 E-value=1.6e-13 Score=119.59 Aligned_cols=151 Identities=19% Similarity=0.152 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCcc-ccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASY-EFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~-p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|.+|||||||+|.|++.... ..+ |.++.+.....+.+++ ..+.++||||..... ......++.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 87 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------AVTRSYYRG 87 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------HHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-------hhHHHHhcc
Confidence 48999999999999999999987643 333 3333344455566666 467889999953211 122234567
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++++|...+... +.+..++ ..+..
T Consensus 88 ~d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~~------- 115 (179)
T 1z0f_A 88 AAGALMVYDITRRSTY-NHLSSWL--------------------------------------------TDARN------- 115 (179)
T ss_dssp CSEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHHH-------
T ss_pred CCEEEEEEeCcCHHHH-HHHHHHH--------------------------------------------HHHHH-------
Confidence 8899999888765321 1111111 11110
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+... ++...+.+ ...++++||+++.|++++.+.+.+.+
T Consensus 116 ------------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 116 ------------L--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp ------------H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------h--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0123699999999998632 22333322 23488999999999999999887755
No 178
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=122.30 Aligned_cols=152 Identities=20% Similarity=0.168 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 98 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR-------AITSAYYRGA 98 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhccC
Confidence 4899999999999999999998764322223223333334455544 567899999964311 1122345788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++ ..+..
T Consensus 99 d~vi~v~D~~~~~s~-~~~~~~l--------------------------------------------~~i~~-------- 125 (193)
T 2oil_A 99 VGALLVFDLTKHQTY-AVVERWL--------------------------------------------KELYD-------- 125 (193)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHHT--------
T ss_pred CEEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 999999888764321 1111111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+... .+...+.. ...++++||+++.|++++.+.+.+.+
T Consensus 126 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 126 -------------HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -------------TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00123699999999998643 22233322 23488999999999999988887654
No 179
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.47 E-value=2.2e-13 Score=122.38 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.+++.... ..+..|+.......+.+++. .+.++||||..... ......++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCchhHH-------HHHHHhcCCC
Confidence 48999999999999999999987643 33433443334456777775 67889999954211 1112246789
Q ss_pred hhhHHHHhcCCc
Q 015822 141 DIVLMVLDASKS 152 (399)
Q Consensus 141 d~il~v~d~~~~ 152 (399)
|++++++|...+
T Consensus 98 d~~i~v~d~~~~ 109 (201)
T 2gco_A 98 DVILMCFSIDSP 109 (201)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999888764
No 180
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.46 E-value=3e-14 Score=125.85 Aligned_cols=53 Identities=28% Similarity=0.370 Sum_probs=44.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~ 120 (399)
+|+|+|++|||||||+|.+++....++..|++|+++.... ++ .+.++||||+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~ 55 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--WK--NHKIIDMPGFG 55 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--ET--TEEEEECCCBS
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe--cC--CEEEEECCCcc
Confidence 7899999999999999999998877888899998776543 33 67889999963
No 181
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.46 E-value=4.7e-14 Score=125.14 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccce------eeeeceE------E-EEC--CEeecccCccccccccccCc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTT------LTCIPGI------I-HYN--DTKIQLLDLPGIIEGASEGK 127 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT------~~~~~G~------i-~~~--g~~i~~iD~~Gl~~~~~~~~ 127 (399)
.+|+|+|.+|||||||+|.|.|.... .+..++ ..|+.|. + .++ +..+.++||||.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPE--GRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCG--GGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccc--cccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 48999999999999999999987543 221111 1122221 1 222 3468899999953211
Q ss_pred ccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHH
Q 015822 128 GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 207 (399)
Q Consensus 128 ~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll 207 (399)
......++++|++++|+|...+...... +.+ ..+...+
T Consensus 89 ---~~~~~~~~~~d~~i~v~D~~~~~~~~~~--~s~-------------------------------------~~l~~~l 126 (198)
T 3t1o_A 89 ---ASRKLILRGVDGIVFVADSAPNRLRANA--ESM-------------------------------------RNMRENL 126 (198)
T ss_dssp ---HHHHHHTTTCCEEEEEEECCGGGHHHHH--HHH-------------------------------------HHHHHHH
T ss_pred ---HHHHHHHhcCCEEEEEEECCcchhhHhH--HHH-------------------------------------HHHHHHH
Confidence 1222346889999999998743211100 000 0111112
Q ss_pred HHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCCh---hhHHHHHcC--C-CEEEecchhccchHHHHH
Q 015822 208 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ--P-NSVVISCNLKLNLDRLLA 281 (399)
Q Consensus 208 ~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~---~~~~~l~~~--~-~~i~vSa~~~~gl~~L~~ 281 (399)
..+. ......|+++|+||+|+... ++...+.+. . .++++||+++.|++++.+
T Consensus 127 ~~~~----------------------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 127 AEYG----------------------LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp HHTT----------------------CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHH
T ss_pred Hhhc----------------------cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHH
Confidence 1111 01124799999999998743 333333321 2 689999999999999988
Q ss_pred HHHHHh
Q 015822 282 RMWEEM 287 (399)
Q Consensus 282 ~i~~~l 287 (399)
.+.+.+
T Consensus 185 ~l~~~i 190 (198)
T 3t1o_A 185 EVSRLV 190 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 182
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.46 E-value=8.9e-14 Score=135.53 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=100.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
..+|+|+|.+|||||||++.|++... +..+| |+......+.+.+..+.++||||..... ......++.+|
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad 234 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQ 234 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETTEEEEEEECC-----C-------CSHHHHHTTEE
T ss_pred cceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCcEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 35899999999999999999998663 34444 7777788888899999999999943211 11223457899
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++|+|+...... +.+...+.. ++..
T Consensus 235 ~vilV~D~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 261 (329)
T 3o47_A 235 GLIFVVDSNDRERV-NEAREELMR----------------------------------------MLAE------------ 261 (329)
T ss_dssp EEEEEEETTCSSSH-HHHHHHHHH----------------------------------------HHTC------------
T ss_pred EEEEEEECCchHHH-HHHHHHHHH----------------------------------------HHhh------------
Confidence 99999998654221 111111100 0000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH---HcC-------CCEEEecchhccchHHHHHHHHHHhC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL---ARQ-------PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l---~~~-------~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
......|+++|+||+|+......+.+ ... ..++++||+++.|+++|.+.|.+.+.
T Consensus 262 ------------~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 262 ------------DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp ------------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred ------------hccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 01124699999999999754332222 111 13789999999999999999988663
No 183
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.46 E-value=4.7e-16 Score=158.05 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=88.6
Q ss_pred cceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeece-E-EEECCEeecccCccccccccccCcccc
Q 015822 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG-I-IHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 53 ~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G-~-i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
++|.+.+ |++++|+||||||||||+++|+|...+ ..| . +.++|. ...++++.
T Consensus 131 vsl~i~~--Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-----------~~G~~pI~vdg~-------------~~~~i~~v 184 (460)
T 2npi_A 131 IRMSNFE--GPRVVIVGGSQTGKTSLSRTLCSYALK-----------FNAYQPLYINLD-------------PQQPIFTV 184 (460)
T ss_dssp HHHHSSS--CCCEEEEESTTSSHHHHHHHHHHTTHH-----------HHCCCCEEEECC-------------TTSCSSSC
T ss_pred CceEeCC--CCEEEEECCCCCCHHHHHHHHhCcccc-----------cCCceeEEEcCC-------------ccCCeeee
Confidence 4455554 779999999999999999999999755 788 7 888761 01234444
Q ss_pred hhhcccc---C---ChhhhHHHHhc-CCcHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCce--------------
Q 015822 131 RQVIAVS---K---SSDIVLMVLDA-SKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS-------------- 188 (399)
Q Consensus 131 ~q~~~~~---~---~~d~il~v~d~-~~~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~ia-------------- 188 (399)
+|....+ . ..+.+ +.... ... ...+.+..+++.+|+ .... +..||+||+||+++|
T Consensus 185 pq~~~l~~~~~~~tv~eni-~~~~~~~~~-~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~s 261 (460)
T 2npi_A 185 PGCISATPISDILDAQLPT-WGQSLTSGA-TLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRS 261 (460)
T ss_dssp SSCCEEEECCSCCCTTCTT-CSCBCBSSC-CSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHS
T ss_pred ccchhhcccccccchhhhh-cccccccCc-chHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcc
Confidence 4433211 1 11122 11110 000 011223345566676 2222 889999999999775
Q ss_pred -eeecc-CCCCCCHHHHHHHHHHhh-hCCcEEEEcCCCC
Q 015822 189 -FNSTL-PLTHVDEKLCYQILHEYK-IHNAEVLFREDAT 224 (399)
Q Consensus 189 -li~DE-pts~LD~~~v~~ll~~l~-~~~~~v~vthd~~ 224 (399)
+++|| ||++||.. ...+.+.+. +..++++++|+..
T Consensus 262 GLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 262 GCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp CEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence 78999 99999987 333333233 3458999999987
No 184
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.46 E-value=2.4e-13 Score=116.50 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+++|++|||||||+|.+++.. ....++.|+.+.....+.+++.. +.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 75 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhhccC
Confidence 379999999999999999999764 33556667766666777777754 6789999953211 1111234567
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+.. .+.+..++ ..+.
T Consensus 76 ~~~i~v~d~~~~~~-~~~~~~~~--------------------------------------------~~i~--------- 101 (166)
T 2ce2_X 76 EGFLCVFAINNTKS-FEDIHQYR--------------------------------------------EQIK--------- 101 (166)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 77788877765422 11111111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
... .....|.++|+||+|+... +....+.+ ..+++++||+++.|++++.+.+.+.+
T Consensus 102 ---------~~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 102 ---------RVK--DSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ---------HHH--TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------Hhc--CCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 000 0113699999999998742 22333321 23689999999999999999887754
No 185
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.46 E-value=6.6e-15 Score=134.34 Aligned_cols=131 Identities=15% Similarity=0.025 Sum_probs=73.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCCh-
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS- 140 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~- 140 (399)
|++++|+||||||||||+++|+|. .+ .+|.+.. ..+.. +. ......+++.+|.. ..+.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p-----------~~G~I~~--~~~~~-~~----~~~~~~ig~v~q~~--~enl~ 80 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-AL-----------QSKQVSR--IILTR-PA----VEAGEKLGFLPGTL--NEKID 80 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HH-----------HTTSCSE--EEEEE-CS----CCTTCCCCSSCC--------C
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CC-----------cCCeeee--EEecC-Cc----hhhhcceEEecCCH--HHHHH
Confidence 679999999999999999999998 65 5666521 11110 00 01123455555542 1111
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHHHHHHHHHhh
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK 211 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~~ll~~l~ 211 (399)
.....+.+..........+.+.|+. ++ ||+||+++| +++||||++ ....+.+++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~ 147 (208)
T 3b85_A 81 PYLRPLHDALRDMVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLG 147 (208)
T ss_dssp TTTHHHHHHHTTTSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhc
Confidence 0000001100000011234455554 43 999999998 999999999 7677777777773
Q ss_pred hCCcEEEEcCCCCHHH
Q 015822 212 IHNAEVLFREDATVDD 227 (399)
Q Consensus 212 ~~~~~v~vthd~~~~~ 227 (399)
...+++ +|||....+
T Consensus 148 ~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 148 FGSKMV-VTGDITQVD 162 (208)
T ss_dssp TTCEEE-EEEC-----
T ss_pred CCCEEE-EECCHHHHh
Confidence 223677 999987544
No 186
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.45 E-value=1.7e-13 Score=119.99 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.+++..... +..|+-+.....+.++|. .+.++||||... ...++++
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~ 73 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWA 73 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhC
Confidence 489999999999999999999865432 333444444566777774 467899998532 1234668
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.. .+.+..+++ .+..+.
T Consensus 74 d~~ilv~D~~~~~s-~~~~~~~~~-----------------------------------------~i~~~~--------- 102 (178)
T 2iwr_A 74 DAVIFVFSLEDENS-FQAVSRLHG-----------------------------------------QLSSLR--------- 102 (178)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH-----------------------------------------HHHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHH-----------------------------------------HHHHHH---------
Confidence 99999999876532 122222111 011110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCC-------ChhhHHHHHc---CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-------GIDDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~-------~~~~~~~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.......|+++|.||+|+. ..++...+.. ...++.+||+++.|++++.+.+.+.+
T Consensus 103 ------------~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 103 ------------GEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp ------------CSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ------------hcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 0001246999999999983 2223333322 23478999999999999988876644
No 187
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=123.50 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.|++.... ..++.|+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 96 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS-------ILPYSFIIGV 96 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTC-------CCCGGGTTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchH-------HHHHHHHhcC
Confidence 58999999999999999999987644 5566666665555565544 567899999954321 1122345789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+.. .+.+..++.. +..
T Consensus 97 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~-------- 123 (201)
T 3oes_A 97 HGYVLVYSVTSLHS-FQVIESLYQK--------------------------------------------LHE-------- 123 (201)
T ss_dssp CEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HHC--------
T ss_pred CEEEEEEeCCCHHH-HHHHHHHHHH--------------------------------------------HHH--------
Confidence 99999999876432 1222222211 110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.. .....|+++|+||+|+.... +...+.. ...++.+||+++.|++++.+.+.+.+.
T Consensus 124 ----------~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 124 ----------GH--GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp -----------------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred ----------hc--CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 01236999999999986432 2222221 235889999999999999998887664
No 188
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.45 E-value=2e-13 Score=121.17 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.|++........|.++.+.....+.+++ ..+.++||||...... ......++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~~~~ 94 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHYYRNV 94 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHHhcCC
Confidence 4899999999999999999997665444556666677777788887 4788999999542110 1112235789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++.. +...
T Consensus 95 d~iilv~D~~~~~s~-~~~~~~~~~----------------------------------------i~~~----------- 122 (189)
T 1z06_A 95 HAVVFVYDMTNMASF-HSLPAWIEE----------------------------------------CKQH----------- 122 (189)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH----------------------------------------HHHh-----------
Confidence 999999998764321 111111110 0000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhc---cchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLK---LNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~---~gl~~L~~~i~~~l 287 (399)
. .....|+++|+||+|+... +....+.. ...++.+||+++ .|++++.+.+.+.+
T Consensus 123 -----------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 123 -----------L--LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp -----------C--CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred -----------c--CCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 0 0123699999999998643 22333322 235899999999 89998888776543
No 189
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.45 E-value=9.4e-14 Score=150.87 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=55.0
Q ss_pred HHHHHHHHcCC---cccccccccchhhHhhcCce------------eeeccCCCCCCHHHHHHHHHHh---h-hCCcEEE
Q 015822 158 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEY---K-IHNAEVL 218 (399)
Q Consensus 158 ~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia------------li~DEpts~LD~~~v~~ll~~l---~-~~~~~v~ 218 (399)
...+.|+.+|+ .+++++..|||||+||+.|| +++||||++||......+++.+ . ...++|+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678899998 46789999999999999887 7899999999998665555544 3 3459999
Q ss_pred EcCCCCH
Q 015822 219 FREDATV 225 (399)
Q Consensus 219 vthd~~~ 225 (399)
++||+..
T Consensus 922 isHdl~~ 928 (993)
T 2ygr_A 922 IEHNLDV 928 (993)
T ss_dssp ECCCHHH
T ss_pred EcCCHHH
Confidence 9999754
No 190
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.45 E-value=1.4e-13 Score=124.39 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||++.+++... ..+++.|+.+.....+.+++ ..+.++||||...... .....++++
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 81 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-------LRPLSYRGA 81 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhccCC
Confidence 4899999999999999999997653 45677777777767777777 4788999999643211 112246789
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+.........++ ..+.
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~--------------------------------------------~~~~--------- 108 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWM--------------------------------------------PELR--------- 108 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHHHHHHHHHHH--------------------------------------------HHHH---------
Confidence 99999999876532211100111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-------------hHHHHH---cCCCEEEecchhccchHHHHHHHH
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-------------DVDKLA---RQPNSVVISCNLKLNLDRLLARMW 284 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-------------~~~~l~---~~~~~i~vSa~~~~gl~~L~~~i~ 284 (399)
......|.++|.||+|+.... +...+. ....++++||+++.|++++.+.+.
T Consensus 109 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 109 -------------RFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp -------------HHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHH
Confidence 001136999999999986432 122222 123589999999999999999887
Q ss_pred HHh
Q 015822 285 EEM 287 (399)
Q Consensus 285 ~~l 287 (399)
+.+
T Consensus 176 ~~~ 178 (212)
T 2j0v_A 176 KVV 178 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 191
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.44 E-value=7.3e-14 Score=125.95 Aligned_cols=56 Identities=29% Similarity=0.317 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC--CCCCccccceeeeeceEEEECCEeecccCccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~--~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~ 120 (399)
+.+|+|+|+||||||||+|+|+|.. ..+++.+|+|+.. +.+.+++ .+.++||||+.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~-~~~l~Dt~G~~ 83 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD-GKRLVDLPGYG 83 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET-TEEEEECCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC-CEEEEECcCCc
Confidence 6799999999999999999999987 3457788888754 4555555 66778999964
No 192
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.43 E-value=6.8e-14 Score=125.37 Aligned_cols=155 Identities=22% Similarity=0.234 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccce-eeeeceEEEECC----EeecccCccccccccccCcccchhhccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTT-LTCIPGIIHYND----TKIQLLDLPGIIEGASEGKGRGRQVIAV 136 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT-~~~~~G~i~~~g----~~i~~iD~~Gl~~~~~~~~~~~~q~~~~ 136 (399)
.+|+|+|++|||||||+|.|++... .+++++.|| .+.....+.++| ..+.++||||..... ......
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~ 93 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK-------EQISQY 93 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH-------HHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH-------HHHHHH
Confidence 4899999999999999999998742 245666565 477778888885 478999999974321 122334
Q ss_pred cCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcE
Q 015822 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (399)
Q Consensus 137 ~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~ 216 (399)
++.+|++++|+|...+... +.+..++. .+..
T Consensus 94 ~~~~d~~i~v~d~~~~~s~-~~~~~~~~--------------------------------------------~i~~---- 124 (208)
T 2yc2_C 94 WNGVYYAILVFDVSSMESF-ESCKAWFE--------------------------------------------LLKS---- 124 (208)
T ss_dssp CCCCCEEEEEEETTCHHHH-HHHHHHHH--------------------------------------------HHHH----
T ss_pred HhhCcEEEEEEECCCHHHH-HHHHHHHH--------------------------------------------HHHH----
Confidence 6789999999998765321 11222211 1110
Q ss_pred EEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCC-h-----hhHHHHHc-C-CCEEEecchh-ccchHHHHHHHHHHh
Q 015822 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-I-----DDVDKLAR-Q-PNSVVISCNL-KLNLDRLLARMWEEM 287 (399)
Q Consensus 217 v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~-~-----~~~~~l~~-~-~~~i~vSa~~-~~gl~~L~~~i~~~l 287 (399)
.........|+++|+||+|+.. . ++...+.+ . ..++++||++ +.|++++.+.+.+.+
T Consensus 125 --------------~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 125 --------------ARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp --------------HCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred --------------hhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 0000012479999999999976 2 22333322 1 3588999999 999999888876644
No 193
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=1.4e-13 Score=122.41 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC--CEeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~--g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++........|..+.+.....+.++ +..+.++|+||..... ......++.+
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 96 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR-------TITTAYYRGA 96 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH-------HHHHHHHTTC
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHHHccC
Confidence 489999999999999999999866433333333334444455554 4678999999953211 1223346788
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|...+... +.+..++ ..+..
T Consensus 97 d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~i~~-------- 123 (191)
T 3dz8_A 97 MGFILMYDITNEESF-NAVQDWA--------------------------------------------TQIKT-------- 123 (191)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH--------------------------------------------HHHHH--------
Confidence 999999988764321 1111111 11110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+... +....+.+ ...++.+||+++.|++++.+.+.+.+
T Consensus 124 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 124 -------------YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp -------------HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 01124699999999998632 22222221 23589999999999999998887654
No 194
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=123.05 Aligned_cols=153 Identities=18% Similarity=0.096 Sum_probs=91.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
..+|+|+|++|||||||+|.|++........|.++.+.....+.+++ ..+.++||||.... .......++.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ 100 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF-------RSIAKSYFRK 100 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC-------HHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch-------hhhHHHHHhh
Confidence 45899999999999999999998763322223333344445667776 45889999995321 1112233567
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|...+... +.+..++ ..+..
T Consensus 101 ~d~iilv~d~~~~~s~-~~~~~~~--------------------------------------------~~i~~------- 128 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSF-LNIREWV--------------------------------------------DMIED------- 128 (199)
T ss_dssp CSEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHHH-------
T ss_pred CCEEEEEEECCChHHH-HHHHHHH--------------------------------------------HHHHH-------
Confidence 8888888887664321 1111111 11110
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----------hhHHHHHc--CCCEEEecchhccchHHHHHHHHHH
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----------DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----------~~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
. .....|+++|+||+|+... +....+.. ...++++||+++.|++++.+.+.+.
T Consensus 129 ------------~--~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~ 194 (199)
T 2p5s_A 129 ------------A--AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194 (199)
T ss_dssp ------------H--C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ------------h--cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 0 0113699999999998521 11222221 2347899999999999999988776
Q ss_pred h
Q 015822 287 M 287 (399)
Q Consensus 287 l 287 (399)
+
T Consensus 195 i 195 (199)
T 2p5s_A 195 V 195 (199)
T ss_dssp H
T ss_pred H
Confidence 5
No 195
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.43 E-value=4.3e-13 Score=119.20 Aligned_cols=153 Identities=12% Similarity=0.070 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.+++.. ...+++.|+.+.....+.+++. .+.++||||..... .+ ...++.+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~----~~~~~~~ 92 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR-FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR----NC----ERYLNWA 92 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC----CT----HHHHTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch----hH----HHHHhhC
Confidence 589999999999999999999865 3466777776665566677764 57789999964321 11 1245778
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++|+|...+.. .+.+..++.. +.
T Consensus 93 ~~~ilv~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 118 (187)
T 3c5c_A 93 HAFLVVYSVDSRQS-FDSSSSYLEL--------------------------------------------LA--------- 118 (187)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 98888888876432 2222222211 10
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecc-hhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISC-NLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa-~~~~gl~~L~~~i~~~l 287 (399)
..........|+++|.||+|+... ++...+.+ ...++.+|| +++.|++++.+.+.+.+
T Consensus 119 ---------~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 119 ---------LHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp ---------HHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred ---------HHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 000000124799999999998632 22333321 235889999 89999999998887654
No 196
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.43 E-value=5.4e-13 Score=117.27 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++.. ...+++.|+.+.....+.+++.. +.++||||..... ......++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 90 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI-FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS-------AMREQYMRTG 90 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC-------SSHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH-------HHHHHHHhcC
Confidence 489999999999999999999764 34566666666667778888865 4559999953211 1111234668
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++++|...+.. .+.+..++.. ++...
T Consensus 91 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~~---------- 119 (183)
T 3kkq_A 91 DGFLIVYSVTDKAS-FEHVDRFHQL----------------------------------------ILRVK---------- 119 (183)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHHHH----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHhc----------
Confidence 88888888876432 1111111110 00000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecch-hccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCN-LKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~-~~~gl~~L~~~i~~~l 287 (399)
.....|+++|+||+|+... ++...+.+ ..+++++||+ ++.|++++.+.+.+.+
T Consensus 120 --------------~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 120 --------------DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp --------------TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred --------------CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 1124699999999998642 22233321 2458999999 9999999998887654
No 197
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.43 E-value=4.6e-13 Score=118.92 Aligned_cols=146 Identities=16% Similarity=0.083 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.+++..... .+. +|.+.....+.++|.. +.++||+|.... . .++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~---~~~~~ 86 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQ-EES-PEGGRFKKEIVVDGQSYLLLIRDEGGPPEL---------Q---FAAWV 86 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCC-CCC-TTCEEEEEEEEETTEEEEEEEEECSSSCCH---------H---HHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CcC-CCcceEEEEEEECCEEEEEEEEECCCChhh---------h---eecCC
Confidence 489999999999999999888765331 222 2334444678888854 566999985321 1 34568
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+.. .+.+..++. .+...
T Consensus 87 ~~~i~v~d~~~~~s-~~~~~~~~~--------------------------------------------~i~~~------- 114 (184)
T 3ihw_A 87 DAVVFVFSLEDEIS-FQTVYNYFL--------------------------------------------RLCSF------- 114 (184)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH--------------------------------------------HHHTT-------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHH--------------------------------------------HHHHh-------
Confidence 88888888876532 122222221 11100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCC-------ChhhHHHHH-cC--CCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-------GIDDVDKLA-RQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~-------~~~~~~~l~-~~--~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|.||+|+. ..++...+. .. ..++.+||+++.|++++.+.+.+.+
T Consensus 115 -------------~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 115 -------------RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp -------------SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -------------cCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 001246999999999983 122333333 22 3578999999999999998887654
No 198
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.43 E-value=3.7e-13 Score=120.74 Aligned_cols=152 Identities=22% Similarity=0.191 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|+||||||||+|+|+|........|.++.++..|.+.++|.+ +.++|++|...... . ....++.+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----~---~~~~~~~~ 78 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR----I---TSAYYRGA 78 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC----C---CHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh----h---hHHHHhcC
Confidence 379999999999999999999987655555777788889999999964 56789998542111 1 11123566
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
+.+++++|...... .+.+..++ ..+..
T Consensus 79 ~~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~~~-------- 105 (199)
T 2f9l_A 79 VGALLVYDIAKHLT-YENVERWL--------------------------------------------KELRD-------- 105 (199)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHHH--------
T ss_pred CEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHHHH--------
Confidence 77777777655322 11111111 11100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHcCCC--EEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQPN--SVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~~~~--~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+... +....+...++ ++.+||+++.|++++.+.+.+.+
T Consensus 106 -------------~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 106 -------------HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp -------------HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------hcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00113689999999998632 22333333233 67799999999999988877655
No 199
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=6.8e-13 Score=121.15 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|.+|||||||+|.++|... .++.+|.|+.+.....+.++|.. +.++||+|..... . .-....++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~-~-----~l~~~~~~~ 111 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGEN-E-----WLHDHCMQV 111 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHH-H-----HHHHCCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchh-h-----hHHHHHHhh
Confidence 4899999999999999999998653 45667777777777788888875 4578998753210 0 001123456
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|.+++|+|...... .+.+..++. .+..
T Consensus 112 a~~~ilVydvt~~~s-f~~~~~~~~--------------------------------------------~l~~------- 139 (211)
T 2g3y_A 112 GDAYLIVYSITDRAS-FEKASELRI--------------------------------------------QLRR------- 139 (211)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHH--------------------------------------------HHHT-------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHH--------------------------------------------HHHH-------
Confidence 778777777765422 111111111 0000
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHH-c-CCCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA-R-QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~-~-~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.. .....|+++|.||+|+.... +...+. . ...++.+||++|.|++++.+.+.+.+
T Consensus 140 ------------~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 140 ------------AR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp ------------SG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------Hh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 01236999999999986321 111221 1 13478999999999999998887755
No 200
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.42 E-value=3.2e-13 Score=130.23 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEE-CCEeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~-~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|.+++.. ..++++|++|++...+.+.+ ++..+.++||||.......- ........++.+
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~~a 81 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENY--FTKQKDHIFQMV 81 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHH--HTTTHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhh--hhhHHHHHhccC
Confidence 589999999999999999988875 55788999999999999988 56889999999964320000 001122235789
Q ss_pred hhhHHHHhcCCcH
Q 015822 141 DIVLMVLDASKSE 153 (399)
Q Consensus 141 d~il~v~d~~~~~ 153 (399)
|++++|+|+....
T Consensus 82 d~vi~V~D~t~~~ 94 (307)
T 3r7w_A 82 QVLIHVFDVESTE 94 (307)
T ss_dssp SEEEEEEETTCSC
T ss_pred CEEEEEEECCChh
Confidence 9999999987653
No 201
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.42 E-value=1.5e-13 Score=146.42 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFT 95 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~T 95 (399)
+.+|+|+|.+|||||||+|+|+|.. .++++.|+|
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 4689999999999999999999988 477888988
No 202
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.42 E-value=1.3e-14 Score=128.06 Aligned_cols=56 Identities=11% Similarity=-0.035 Sum_probs=42.0
Q ss_pred ccccccchhhHhhcCce---------eeeccCCCCCCHH----------------HHHHHHHHh---h-hCCcEEEEcCC
Q 015822 172 KRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK----------------LCYQILHEY---K-IHNAEVLFRED 222 (399)
Q Consensus 172 ~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~----------------~v~~ll~~l---~-~~~~~v~vthd 222 (399)
......|+|++||+.+| +++||||++||+. ....+.+.+ . ...++|++|||
T Consensus 79 ~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~ 158 (171)
T 4gp7_A 79 DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS 158 (171)
T ss_dssp ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence 34456699999999988 8999999999987 445555443 3 23489999999
Q ss_pred CCHHH
Q 015822 223 ATVDD 227 (399)
Q Consensus 223 ~~~~~ 227 (399)
+...+
T Consensus 159 ~~~~~ 163 (171)
T 4gp7_A 159 PEEVE 163 (171)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 76544
No 203
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.42 E-value=4.8e-13 Score=118.26 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++.... ..+..|+.......+.+++ ..+.++||||..... ......++.+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-------NVRPLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT-------TTGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhh-------hhHHhhcCCC
Confidence 48999999999999999999986533 3343344333444555655 467889999954211 1112245789
Q ss_pred hhhHHHHhcCCcH
Q 015822 141 DIVLMVLDASKSE 153 (399)
Q Consensus 141 d~il~v~d~~~~~ 153 (399)
|++++++|...+.
T Consensus 80 ~~~i~v~d~~~~~ 92 (184)
T 1m7b_A 80 DAVLICFDISRPE 92 (184)
T ss_dssp SEEEEEEETTCHH
T ss_pred cEEEEEEECCCHH
Confidence 9999999987653
No 204
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.42 E-value=3.7e-13 Score=120.23 Aligned_cols=152 Identities=21% Similarity=0.220 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee--cccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i--~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|+||||||||+|.|+|...+....|.++.++..|.+.++|.++ .++|++|.... .++..+. ++.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----~~~~~~~---~~~~ 102 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY----RAITSAY---YRGA 102 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS----SCCCHHH---HTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcch----hhhhHHH---hhcC
Confidence 4899999999999999999999887666678888888999999999765 45899986431 1222222 3456
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
+.+++++|...... .+.+..++ ..+.
T Consensus 103 ~~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~~--------- 128 (191)
T 1oix_A 103 VGALLVYDIAKHLT-YENVERWL--------------------------------------------KELR--------- 128 (191)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHH--------------------------------------------HHHH---------
Confidence 66666666554321 11111111 1100
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHcCCC--EEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQPN--SVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~~~~--~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.......|+++|+||+|+... .....+...++ ++.+||+++.|++++.+.+.+.+
T Consensus 129 ------------~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 129 ------------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ------------HHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------HhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 000123689999999998632 22233333333 67799999999999998887654
No 205
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.42 E-value=2.9e-14 Score=130.04 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHH-HhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTL-LTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~-L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||+|. +.|.. ....+.+++|.......+...+..+.++||||..... ......++.+
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 88 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG-------GLRDGYYIQA 88 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTS-------CCCHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHh-------HHHHHHHhcC
Confidence 4899999999999999999 65543 3356677788777665554344678899999953211 1112235688
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|++++|+|....... +.+..++ ..+.
T Consensus 89 ~~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~--------- 114 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTY-KNVPNWH--------------------------------------------RDLV--------- 114 (221)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHH---------
T ss_pred CEEEEEEECCCHHHH-HHHHHHH--------------------------------------------HHHH---------
Confidence 999999988764321 1111111 1110
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChhh---HHHHH--cCCCEEEecchhccchHHHHHHHHHHh
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~---~~~l~--~~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
......|+++|+||+|+..... ...+. ....++.+||+++.|++++.+.+.+.+
T Consensus 115 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 115 -------------RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp -------------HHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0011369999999999874321 11111 123588999999999999998887765
No 206
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.41 E-value=1.6e-14 Score=137.86 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=35.3
Q ss_pred cccEEEEEecCCCCChhh--HHHHHc--------CCCEEEecchhccchHHHHHHHHHH
Q 015822 238 YMKCVYVYNKIDVIGIDD--VDKLAR--------QPNSVVISCNLKLNLDRLLARMWEE 286 (399)
Q Consensus 238 ~~p~iiv~NK~Dl~~~~~--~~~l~~--------~~~~i~vSa~~~~gl~~L~~~i~~~ 286 (399)
..|+++|+||+|+..... .+.+.. +..++++||+++.|+++|.+.+.+.
T Consensus 192 ~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 192 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 369999999999975432 222221 1236778999999999998888663
No 207
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=3.6e-13 Score=120.27 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=97.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
..+|+|+|.+|||||||+|.|++... ...++.|+.+.....+.+++ ..+.++|+||... . ......++.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~---~~~~~~~~~ 98 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRF-IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----T---IQREGHMRW 98 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C---HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----c---cchhhhhcc
Confidence 45899999999999999999998653 23455555555555677776 4588899999653 1 112223466
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|.+.+.. .+.+..++. .+.
T Consensus 99 ~d~iilv~D~~~~~s-~~~~~~~~~--------------------------------------------~i~-------- 125 (196)
T 2atv_A 99 GEGFVLVYDITDRGS-FEEVLPLKN--------------------------------------------ILD-------- 125 (196)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHH--------------------------------------------HHH--------
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHH--------------------------------------------HHH--------
Confidence 888888988876432 111111111 110
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHc--CCCEEEecchhcc-chHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKL-NLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~--~~~~i~vSa~~~~-gl~~L~~~i~~~l 287 (399)
... .....|+++|+||+|+... ++...+.+ ..+++++||+++. |++++.+.+.+.+
T Consensus 126 ----------~~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 126 ----------EIK--KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp ----------HHH--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred ----------Hhh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 000 0124699999999998642 22223321 2358899999999 9999998887654
No 208
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.41 E-value=7.2e-13 Score=120.60 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=97.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
..+|+|+|.+|||||||++.+++... ...+..|+.+.....+.+++ ..+.++||+|..... ......++.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 98 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD-------NVRPLCYSD 98 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGT-------TTGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHH-------HHHHHHcCC
Confidence 35899999999999999999988653 34555555554444555555 567889999954321 112234678
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++|+|...+......+..++. .+.
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~--------------------------------------------~i~-------- 126 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRT--------------------------------------------EIL-------- 126 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHH--------------------------------------------HHH--------
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHH--------------------------------------------HHH--------
Confidence 9999999998765432211121111 111
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----------------hhHHHHH---cCCCEEEecchhccc-hHH
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----------------DDVDKLA---RQPNSVVISCNLKLN-LDR 278 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----------------~~~~~l~---~~~~~i~vSa~~~~g-l~~ 278 (399)
......|+++|.||+|+... ++...+. ....++.+||+++.| +++
T Consensus 127 --------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 127 --------------DYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp --------------HHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHH
T ss_pred --------------HhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHH
Confidence 00113699999999998531 1222222 122578999999998 999
Q ss_pred HHHHHHHHh
Q 015822 279 LLARMWEEM 287 (399)
Q Consensus 279 L~~~i~~~l 287 (399)
+.+.+.+.+
T Consensus 193 lf~~l~~~~ 201 (214)
T 3q3j_B 193 IFRTASMLC 201 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887765
No 209
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.1e-13 Score=145.53 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=68.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCc-------------------------------cccceeeeeceEEEECCEe
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAAS-------------------------------YEFTTLTCIPGIIHYNDTK 110 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~-------------------------------~p~TT~~~~~G~i~~~g~~ 110 (399)
..+|+|+|.+|+|||||+|.|++....+.. .+|+|++.....+...+..
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 246 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 246 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCE
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCce
Confidence 458999999999999999999987544433 2789999999999999999
Q ss_pred ecccCccccccccccCcccchhhccccCChhhhHHHHhcCC
Q 015822 111 IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (399)
Q Consensus 111 i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~ 151 (399)
+.++||||... +.......++.+|++++|+|+..
T Consensus 247 ~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 247 FTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp EEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSH
T ss_pred EEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCC
Confidence 99999999743 23445556788999999999865
No 210
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.41 E-value=3.7e-13 Score=121.76 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEEC---CEeecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~---g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|.+|||||||++.+++.. .+..++.|+.+ ...+.++ +..+.++||||....... -....++.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~~~ 78 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDS--SAIYKVNNNRGNSLTLIDLPGHESLRFQ------LLDRFKSS 78 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCSCE--EEEEECSSTTCCEEEEEECCCCHHHHHH------HHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-cccccCCccee--eEEEEecCCCccEEEEEECCCChhHHHH------HHHHHHhh
Confidence 589999999999999999999765 34556644433 3447776 567999999996432100 01112577
Q ss_pred hhhhHHHHhcCC
Q 015822 140 SDIVLMVLDASK 151 (399)
Q Consensus 140 ~d~il~v~d~~~ 151 (399)
+|++++|+|...
T Consensus 79 ~~~~i~v~d~~~ 90 (214)
T 2fh5_B 79 ARAVVFVVDSAA 90 (214)
T ss_dssp EEEEEEEEETTT
T ss_pred CCEEEEEEECCC
Confidence 899999998865
No 211
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.41 E-value=1e-12 Score=117.55 Aligned_cols=154 Identities=20% Similarity=0.193 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
.+|+|+|.||||||||+|.++|.. ..+++++.|+.+.....+.++|.. +.++||+|..... ..+.. ..++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~---~~~~~---~~~~~ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN---EWLHD---HCMQV 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------CTTGG---GHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh---hhHHH---hhccc
Confidence 489999999999999999999754 345677778888777788888875 4568998753210 00111 12344
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|.+++|+|...... .+.+..++. .+..+.
T Consensus 81 ~~~~i~v~dv~~~~s-~~~~~~~~~-----------------------------------------~l~~~~-------- 110 (192)
T 2cjw_A 81 GDAYLIVYSITDRAS-FEKASELRI-----------------------------------------QLRRAR-------- 110 (192)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHH-----------------------------------------HHHHHT--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHH-----------------------------------------HHHHhh--------
Confidence 666667777655322 111111110 000000
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHH-cC-CCEEEecchhccchHHHHHHHHHHh
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA-RQ-PNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~-~~-~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.....|+++|.||+|+.... +...+. .. ..++.+||++|.|++++.+.+.+.+
T Consensus 111 ---------------~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 111 ---------------QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp ---------------TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 01136999999999986321 111221 12 3478899999999999998887655
No 212
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.11 E-value=2.1e-14 Score=129.19 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=60.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe--ecccCccccccccccCcccchhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~--i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
..+|+|+|.+|||||||++.+++... ...++.||.+.....+.+++.. +.++||||..... ......+++
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQ 101 (204)
Confidence 35899999999999999999987543 4566777777777777777654 5589999964321 111224577
Q ss_pred hhhhHHHHhcCCc
Q 015822 140 SDIVLMVLDASKS 152 (399)
Q Consensus 140 ~d~il~v~d~~~~ 152 (399)
+|++++|+|...+
T Consensus 102 ~d~iilv~D~~~~ 114 (204)
T 3th5_A 102 TDVFLICFSLVSP 114 (204)
Confidence 9999999997654
No 213
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.40 E-value=3.4e-13 Score=122.37 Aligned_cols=152 Identities=18% Similarity=0.154 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceE-EEEC-C--EeecccCccccccccccCcccchhhccccC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGI-IHYN-D--TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~-i~~~-g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~ 138 (399)
.+|+|+|.+|||||||+|.|++.... ..+..|+-...... +... + ..+.++||||..... ......++
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 83 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA-------VLKDVYYI 83 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS-------CCCHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc-------hHHHHHhh
Confidence 48999999999999999999976532 22222221112222 2222 2 568899999964321 11112357
Q ss_pred ChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEE
Q 015822 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (399)
Q Consensus 139 ~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~ 218 (399)
.+|++++++|....... +.+..++ ..+.
T Consensus 84 ~~d~~i~v~d~~~~~s~-~~~~~~~--------------------------------------------~~~~------- 111 (218)
T 4djt_A 84 GASGAILFFDVTSRITC-QNLARWV--------------------------------------------KEFQ------- 111 (218)
T ss_dssp TCSEEEEEEETTCHHHH-HTHHHHH--------------------------------------------HHHH-------
T ss_pred cCCEEEEEEeCCCHHHH-HHHHHHH--------------------------------------------HHHH-------
Confidence 78999999998765321 1111111 1111
Q ss_pred EcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh-----HHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 219 vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-----~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.. .....|+++|+||+|+..... ...+.. ...++.+||+++.|++++.+.+.+.+.
T Consensus 112 ------------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 112 ------------AV--VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp ------------HH--HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred ------------Hh--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHh
Confidence 00 011369999999999875421 222222 134899999999999999998887664
No 214
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.40 E-value=3.4e-13 Score=134.93 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeec-----eEE--------------EECCEeecccCccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIP-----GII--------------HYNDTKIQLLDLPGIIEG 122 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~-----G~i--------------~~~g~~i~~iD~~Gl~~~ 122 (399)
.+|+++|.+|+|||||+|+|+|... ....++++|..... ..+ ......+.++||||...
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~- 87 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV- 87 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG-
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH-
Confidence 5899999999999999999999653 34455555542210 000 11126788999999432
Q ss_pred cccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHH
Q 015822 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (399)
Q Consensus 123 ~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~ 202 (399)
+.......+..+|++++++|+.......+ ..+.+
T Consensus 88 ------~~~~~~~~~~~~D~~ilVvda~~~~~~~q-t~~~~--------------------------------------- 121 (403)
T 3sjy_A 88 ------LMATMLSGAALMDGAILVVAANEPFPQPQ-TREHF--------------------------------------- 121 (403)
T ss_dssp ------GHHHHHHHHTTCSEEEEEEETTSCSSCHH-HHHHH---------------------------------------
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCCcHH-HHHHH---------------------------------------
Confidence 22344455678999999998875421111 00000
Q ss_pred HHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhH----HHHHc--------CCCEEEecc
Q 015822 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLAR--------QPNSVVISC 270 (399)
Q Consensus 203 v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~----~~l~~--------~~~~i~vSa 270 (399)
.+++. ...+|.++|+||+|+.+.++. +.+.+ ..+++++||
T Consensus 122 --~~~~~--------------------------~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA 173 (403)
T 3sjy_A 122 --VALGI--------------------------IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 173 (403)
T ss_dssp --HHHHH--------------------------HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred --HHHHH--------------------------cCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEEC
Confidence 00110 012589999999999876532 22211 235999999
Q ss_pred hhccchHHHHHHHHHHhC
Q 015822 271 NLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 271 ~~~~gl~~L~~~i~~~l~ 288 (399)
++|.|+++|++.+.+.+.
T Consensus 174 ~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 174 LHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTBSHHHHHHHHHHHSC
T ss_pred CCCcChHHHHHHHHHhCC
Confidence 999999999999988664
No 215
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.40 E-value=6.9e-13 Score=120.06 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.+++.... .++..|+.......+.+++ ..+.++||||..... ......++.+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 100 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-------NVRPLSYPDS 100 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhh-------HHHHhhccCC
Confidence 48999999999999999999987543 3343344333444555555 568899999964321 1112245789
Q ss_pred hhhHHHHhcCCcH
Q 015822 141 DIVLMVLDASKSE 153 (399)
Q Consensus 141 d~il~v~d~~~~~ 153 (399)
|++++++|...+.
T Consensus 101 d~~ilv~D~~~~~ 113 (205)
T 1gwn_A 101 DAVLICFDISRPE 113 (205)
T ss_dssp SEEEEEEETTCHH
T ss_pred CEEEEEEECCCHH
Confidence 9999999987653
No 216
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.39 E-value=2.3e-13 Score=120.54 Aligned_cols=153 Identities=19% Similarity=0.160 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC-CCccccc-eeeeeceEEEE-----CCEeecccCccccccccccCcccchhhcc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFT-TLTCIPGIIHY-----NDTKIQLLDLPGIIEGASEGKGRGRQVIA 135 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~-vs~~p~T-T~~~~~G~i~~-----~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~ 135 (399)
.+|+|+|++|||||||+|.+++...+ .+.+..| +.+...-.+.+ ....+.++||+|....... .. .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----~~---~ 75 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST----HP---H 75 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT----SH---H
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh----hH---H
Confidence 37999999999999999999997422 3333222 23322222222 2456788999986432111 01 1
Q ss_pred ccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCc
Q 015822 136 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (399)
Q Consensus 136 ~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~ 215 (399)
.++.++++++++|.+.+....+.+..++ ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~s~~~~~~~~--------------------------------------------~~~~---- 107 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQAEVDAMKPWL--------------------------------------------FNIK---- 107 (184)
T ss_dssp HHHHSEEEEEEEEGGGCHHHHHTHHHHH--------------------------------------------HHHH----
T ss_pred HccCCcEEEEEEeCCcchhHHHHHHHHH--------------------------------------------HHHH----
Confidence 2344566666666654322112111111 1110
Q ss_pred EEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhH--------HHHHc-C-CC----EEEecchhcc-chHHHH
Q 015822 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV--------DKLAR-Q-PN----SVVISCNLKL-NLDRLL 280 (399)
Q Consensus 216 ~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~--------~~l~~-~-~~----~i~vSa~~~~-gl~~L~ 280 (399)
......|+++|.||+|+...... ..+.+ . .. ++.+||+++. ++++|.
T Consensus 108 ------------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~ 169 (184)
T 2zej_A 108 ------------------ARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLR 169 (184)
T ss_dssp ------------------HHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHH
T ss_pred ------------------hhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHH
Confidence 00113699999999999765432 12221 1 12 7889999996 999999
Q ss_pred HHHHHHhC
Q 015822 281 ARMWEEMG 288 (399)
Q Consensus 281 ~~i~~~l~ 288 (399)
+.+.+.+.
T Consensus 170 ~~i~~~~~ 177 (184)
T 2zej_A 170 KTIINESL 177 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99887653
No 217
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=2.8e-13 Score=117.18 Aligned_cols=154 Identities=20% Similarity=0.202 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECC--EeecccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|++|||||||+|.|++...... +..|+-......+.+++ ..+.++||||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 75 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLSISKG 75 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHhcccC
Confidence 4899999999999999999998653211 21122122223344555 357899999964211 1111234567
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
|.+++++|...+... +.+..++. .+..+
T Consensus 76 ~~~i~v~d~~~~~~~-~~~~~~~~-----------------------------------------~i~~~---------- 103 (172)
T 2erx_A 76 HAFILVYSITSRQSL-EELKPIYE-----------------------------------------QICEI---------- 103 (172)
T ss_dssp SEEEEEEETTCHHHH-HTTHHHHH-----------------------------------------HHHHH----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHH-----------------------------------------HHHHH----------
Confidence 888888887654321 11111110 00000
Q ss_pred CCCCHHHHHHHHhhccccccEEEEEecCCCCChh-----hHHHHHc--CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 221 hd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~-----~~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.......|+++|+||+|+.... ....+.. ..+++++||+++.|++++.+.+.+.+.
T Consensus 104 ------------~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 104 ------------KGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ------------HC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ------------hCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 0001236999999999986432 2222221 235789999999999999999987653
No 218
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.39 E-value=3.4e-13 Score=129.81 Aligned_cols=167 Identities=13% Similarity=0.129 Sum_probs=82.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC-CCCCCcccc------ceeeee-ceEE-EECC--EeecccCccccccccccCcccchh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT-HSEAASYEF------TTLTCI-PGII-HYND--TKIQLLDLPGIIEGASEGKGRGRQ 132 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~-~~~vs~~p~------TT~~~~-~G~i-~~~g--~~i~~iD~~Gl~~~~~~~~~~~~q 132 (399)
.|+|+|+||||||||+|+|.|. ..+.+..++ .|.... .+.+ ..++ ..++++|++|+..... ..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~------~~ 93 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN------CR 93 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcC------cH
Confidence 6699999999999999999997 444322211 111111 1111 1122 3456677776531100 00
Q ss_pred hccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce-----eeeccCCCC-CCHHHHHHH
Q 015822 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS-----FNSTLPLTH-VDEKLCYQI 206 (399)
Q Consensus 133 ~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia-----li~DEpts~-LD~~~v~~l 206 (399)
..++ .++ ..+.+. .++++..+|+|++|++.++ +++||||++ ||+... ++
T Consensus 94 --e~~~--~l~-------------~~l~~~-------~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~-~~ 148 (301)
T 2qnr_A 94 --DCFK--TII-------------SYIDEQ-------FERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AF 148 (301)
T ss_dssp ----CT--THH-------------HHHHHH-------HHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH-HH
T ss_pred --HHHH--HHH-------------HHHHHH-------HHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH-HH
Confidence 0000 000 001111 2345578899999999875 888999985 998763 44
Q ss_pred HHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHH----HH----Hc-CCCEEEecchhccchH
Q 015822 207 LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KL----AR-QPNSVVISCNLKLNLD 277 (399)
Q Consensus 207 l~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~----~l----~~-~~~~i~vSa~~~~gl~ 277 (399)
++.+. ...|+++|+||.|+....++. .+ .. ...++.+||+++ +++
T Consensus 149 l~~l~-------------------------~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~ 202 (301)
T 2qnr_A 149 MKAIH-------------------------NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DED 202 (301)
T ss_dssp HHHHT-------------------------TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC--------
T ss_pred HHHHH-------------------------hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-ccc
Confidence 44332 125899999999998654321 11 11 134788999999 998
Q ss_pred HHHHHHHHHh
Q 015822 278 RLLARMWEEM 287 (399)
Q Consensus 278 ~L~~~i~~~l 287 (399)
++...+.+.+
T Consensus 203 e~f~~l~~~i 212 (301)
T 2qnr_A 203 EDFKEQTRLL 212 (301)
T ss_dssp --CHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8766655543
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.38 E-value=2.8e-14 Score=142.85 Aligned_cols=138 Identities=15% Similarity=0.020 Sum_probs=81.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCC---h
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS---S 140 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~---~ 140 (399)
.+||+|+||||||||+|+|+|...+ ..|.+.++|.++.. .++. .|.. .+.+ .
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p-----------~~GsI~~~g~~~t~---~~~v----------~q~~-~~~~ltv~ 125 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNE-----------EEGAAKTGVVEVTM---ERHP----------YKHP-NIPNVVFW 125 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT-----------STTSCCCCC----C---CCEE----------EECS-SCTTEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc-----------cCceEEECCeecce---eEEe----------cccc-ccCCeeeh
Confidence 9999999999999999999998755 45555555543310 0110 1100 0000 0
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCC-cccccccccchh--hHhhcCce-------------------eeeccCCCCC
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFK--KKKTGGIS-------------------FNSTLPLTHV 198 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g--~kqr~~ia-------------------li~DEpts~L 198 (399)
|.+.+. . ....+.+.|+.+++ .....+. ||+| ++|++.++ +++||||++|
T Consensus 126 D~~g~~-~------~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgL 197 (413)
T 1tq4_A 126 DLPGIG-S------TNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEP 197 (413)
T ss_dssp ECCCGG-G------SSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCC
T ss_pred Hhhccc-c------hHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccC
Confidence 111000 0 01235667777777 2333333 9999 99998776 5789999999
Q ss_pred CHH---HHHHHHHHhh-----h----C-CcEEEEcCCCC---HHHHHHHHhh
Q 015822 199 DEK---LCYQILHEYK-----I----H-NAEVLFREDAT---VDDLIDVIEG 234 (399)
Q Consensus 199 D~~---~v~~ll~~l~-----~----~-~~~v~vthd~~---~~~~~~~i~~ 234 (399)
|+. .+.++++.+. . . ..+++.+|+.. ++++++.+..
T Consensus 198 D~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 198 QTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHH
Confidence 976 4455555552 1 1 23566778655 7788888854
No 220
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.38 E-value=4.6e-14 Score=138.00 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=51.0
Q ss_pred ccEEEEEecCCCCChhh-----HHHHH------c------CCCEEEecchhccchHHHHHHHHHHhCceEEEeCCCCCCC
Q 015822 239 MKCVYVYNKIDVIGIDD-----VDKLA------R------QPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQP 301 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~~-----~~~l~------~------~~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~~~~~~~~~p 301 (399)
.+.++|+||+|+..... ...+. . .++++++||.++.|+++|.+.|.+.+... .
T Consensus 194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~----~------ 263 (337)
T 2qm8_A 194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL----T------ 263 (337)
T ss_dssp HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH----H------
T ss_pred cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH----H------
Confidence 36688889999753221 12221 1 35789999999999999999998765321 0
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHHHHHHhhccc
Q 015822 302 DFTEPVVLSVDRGGCTVEDFCNHIHRSLVKDVK 334 (399)
Q Consensus 302 ~~~~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~ 334 (399)
..++ +.+.|+......+.+.+...+...|.
T Consensus 264 --~~~~-~~~~r~~~~~~~~~~~i~~~~~~~~~ 293 (337)
T 2qm8_A 264 --ATGE-IAGKRREQDVKWMWALVHERLHQRLV 293 (337)
T ss_dssp --HTTH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --hCcH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122 23334444455666666666655553
No 221
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.38 E-value=7.9e-13 Score=127.42 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeec--ccCccccccccccCcccchhhccccCCh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~--~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
.+|+|+|.+|||||||++.+++.. ....++.||.+.....+.+++..+. ++||||..... ......++.+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 227 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQT 227 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC-CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-------TTGGGGCTTC
T ss_pred eEEEEECCCCCChHHHHHHHHhCC-CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-------HHHHHhccCC
Confidence 589999999999999999999754 3567788888888888888887655 99999964321 1122346789
Q ss_pred hhhHHHHhcCCcH
Q 015822 141 DIVLMVLDASKSE 153 (399)
Q Consensus 141 d~il~v~d~~~~~ 153 (399)
|++++|+|.+.+.
T Consensus 228 d~~i~v~d~~~~~ 240 (332)
T 2wkq_A 228 DVFLICFSLVSPA 240 (332)
T ss_dssp SEEEEEEETTCHH
T ss_pred CEEEEEEeCCCHH
Confidence 9999999987653
No 222
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.37 E-value=2.3e-13 Score=128.99 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccc------cceeeeeceEEEE--CCE--eecccCccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYE------FTTLTCIPGIIHY--NDT--KIQLLDLPGII 120 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p------~TT~~~~~G~i~~--~g~--~i~~iD~~Gl~ 120 (399)
.+|+|+|.+|||||||+|+|++......++| ++|+.+......+ +|. .+.++||||+.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 4899999999999999999999887666664 5555555544444 453 78999999974
No 223
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.37 E-value=4.7e-13 Score=135.41 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCC-------------------------------CccccceeeeeceEEEECCEee
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEA-------------------------------ASYEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~v-------------------------------s~~p~TT~~~~~G~i~~~g~~i 111 (399)
..|+++|.+|+|||||++.|++....+ ...+++|++.....+..++..+
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~ 97 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHF 97 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEE
Confidence 589999999999999999996543111 1126889999888899999999
Q ss_pred cccCccccccccccCcccchhhccccCChhhhHHHHhcCCc
Q 015822 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 112 ~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.++||||.... .......+..+|++++|+|+...
T Consensus 98 ~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 98 TILDAPGHKSF-------VPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred EEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCCC
Confidence 99999996432 23444456789999999998754
No 224
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.35 E-value=3.3e-13 Score=138.13 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-------------------------------CCCccccceeeeeceEEEECCEee
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-------------------------------EAASYEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-------------------------------~vs~~p~TT~~~~~G~i~~~g~~i 111 (399)
.+|+|+|.+|+|||||+|.|++... .....+|+|++.....+...+..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 4899999999999999999975521 123346889988888888888999
Q ss_pred cccCccccccccccCcccchhhccccCChhhhHHHHhcCCc
Q 015822 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 112 ~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.++||||... +.......+..+|++++|+|+...
T Consensus 114 ~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 114 TIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC-
T ss_pred EEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCC
Confidence 9999999743 223445567889999999998764
No 225
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=2e-12 Score=115.09 Aligned_cols=156 Identities=16% Similarity=0.180 Sum_probs=92.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
..+|+|+|++|||||||+|.|++..... .+..|+-....-.+.+++. .+.++||||..... ......++.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 79 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQRLSISK 79 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHHHhhcc
Confidence 3589999999999999999999865321 1211211122233445553 67899999954311 111123456
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
+|++++++|...+... +.+..++ ..+..+
T Consensus 80 ~d~~i~v~d~~~~~s~-~~~~~~~-----------------------------------------~~i~~~--------- 108 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSL-EELGPIY-----------------------------------------KLIVQI--------- 108 (199)
T ss_dssp CSEEEEEEETTCHHHH-HTTHHHH-----------------------------------------HHHHHH---------
T ss_pred CCEEEEEEECcCHHHH-HHHHHHH-----------------------------------------HHHHHH---------
Confidence 7888888887654321 1111111 111110
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh----hhHHHHH-c-CCCEEEecchhccchHHHHHHHHHHhCc
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLA-R-QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~----~~~~~l~-~-~~~~i~vSa~~~~gl~~L~~~i~~~l~~ 289 (399)
.......|+++|+||+|+... +....+. . ...++++||+++.|+++|.+.+.+.+..
T Consensus 109 -------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 109 -------------KGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp -------------HSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred -------------hcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 001123699999999998742 1222222 1 2358899999999999999999887653
No 226
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.34 E-value=2.2e-13 Score=131.13 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=34.6
Q ss_pred cccEEEEEecCCCCChhh--HHHHHc---C--CCEE---Eecchh---ccchHHHHHHHHHHhC
Q 015822 238 YMKCVYVYNKIDVIGIDD--VDKLAR---Q--PNSV---VISCNL---KLNLDRLLARMWEEMG 288 (399)
Q Consensus 238 ~~p~iiv~NK~Dl~~~~~--~~~l~~---~--~~~i---~vSa~~---~~gl~~L~~~i~~~l~ 288 (399)
..|+++|+||+|+..... .+.+.. . ...+ ++||.. +.|++++.+.+.+.+.
T Consensus 198 ~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 198 GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 369999999999975433 333322 1 2344 456666 7888999999888774
No 227
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.33 E-value=1.6e-13 Score=143.69 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-C------------------------------CCccccceeeeeceEEEECCEee
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-E------------------------------AASYEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~------------------------------vs~~p~TT~~~~~G~i~~~g~~i 111 (399)
..|+|+|.+|+|||||+|.|++... . ....+|+|++.....+.+++..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 4799999999999999999964210 0 11257899999999999999999
Q ss_pred cccCccccccccccCcccchhhccccCChhhhHHHHhcCC
Q 015822 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (399)
Q Consensus 112 ~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~ 151 (399)
.++||||.... .......+..+|++++|+|+..
T Consensus 258 ~iiDTPGh~~f-------~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 258 EIGDAPGHRDF-------ISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp -CCEEESSSEE-------EEECCC-------CCSEEEEEE
T ss_pred EEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCC
Confidence 99999997532 2233445678999999999864
No 228
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.33 E-value=1.6e-13 Score=141.63 Aligned_cols=150 Identities=21% Similarity=0.183 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEE-CCEeecccCccccccccccCcccchhhccccCChh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
.+|+|+|.+|+|||||+++|++........|++|.+.....+.+ +|..+.++||||.... .......++.+|
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f-------~~~~~~~~~~aD 77 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAF-------SAMRARGTQVTD 77 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCT-------TTSBBSSSBSBS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHH-------HHHHHHHHccCC
Confidence 48999999999999999999987765567899999998888877 5778999999995321 112223457799
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcC
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vth 221 (399)
++++|+|+........ . +.+..+.
T Consensus 78 ~vILVVDa~dg~~~qt-~---------------------------------------------e~l~~~~---------- 101 (537)
T 3izy_P 78 IVILVVAADDGVMKQT-V---------------------------------------------ESIQHAK---------- 101 (537)
T ss_dssp SCEEECBSSSCCCHHH-H---------------------------------------------HHHHHHH----------
T ss_pred EEEEEEECCCCccHHH-H---------------------------------------------HHHHHHH----------
Confidence 9999998865321110 0 0011000
Q ss_pred CCCHHHHHHHHhhccccccEEEEEecCCCCChh------hHHHHH----cC---CCEEEecchhccchHHHHHHHHHHhC
Q 015822 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID------DVDKLA----RQ---PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 222 d~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~------~~~~l~----~~---~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
....|.++|+||+|+.... ++..+. .+ .+++++||++|.|+++|++.+...+.
T Consensus 102 --------------~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 102 --------------DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp --------------TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred --------------HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 1136999999999987421 122211 11 24788999999999999999988765
Q ss_pred c
Q 015822 289 L 289 (399)
Q Consensus 289 ~ 289 (399)
.
T Consensus 168 ~ 168 (537)
T 3izy_P 168 M 168 (537)
T ss_dssp T
T ss_pred c
Confidence 3
No 229
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.32 E-value=3.6e-12 Score=123.67 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=46.6
Q ss_pred ccccccccchhhHhhcCce-------------eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHH
Q 015822 170 LNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLID 230 (399)
Q Consensus 170 ~~~~~~~LS~g~kqr~~ia-------------li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~ 230 (399)
.+.++..||+||+|++.|| +++||||++||+.....++..+. ...+++++||+....+++|
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d 289 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAAD 289 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCS
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCc
Confidence 3456789999999999766 78899999999986666555553 2348999999976655444
No 230
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.32 E-value=3.5e-12 Score=127.82 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC---CCccccceeeeeceEEEEC-----------------C------EeecccCc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHYN-----------------D------TKIQLLDL 116 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~---vs~~p~TT~~~~~G~i~~~-----------------g------~~i~~iD~ 116 (399)
..|+++|.+|+|||||+++|+|.... ....+++|++.......+. | ..+.++||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 48999999999999999999987532 2234777887654444331 1 67899999
Q ss_pred cccccccccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCC
Q 015822 117 PGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLT 196 (399)
Q Consensus 117 ~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts 196 (399)
||.... .......+..+|.+++|+|+.......+..+ .+
T Consensus 91 PGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l--------------------------------- 129 (410)
T 1kk1_A 91 PGHEAL-------MTTMLAGASLMDGAILVIAANEPCPRPQTRE-HL--------------------------------- 129 (410)
T ss_dssp SSHHHH-------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HH---------------------------------
T ss_pred CChHHH-------HHHHHhhhhhCCEEEEEEECCCCCCChhHHH-HH---------------------------------
Confidence 996421 1233444567899999998875310000000 00
Q ss_pred CCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh----HHHHH---c-----CCC
Q 015822 197 HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD----VDKLA---R-----QPN 264 (399)
Q Consensus 197 ~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~----~~~l~---~-----~~~ 264 (399)
.+++.+ ..+|.++|+||+|+...++ .+.+. + ..+
T Consensus 130 --------~~~~~~--------------------------~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 175 (410)
T 1kk1_A 130 --------MALQII--------------------------GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP 175 (410)
T ss_dssp --------HHHHHH--------------------------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC
T ss_pred --------HHHHHc--------------------------CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe
Confidence 000100 1258999999999986542 22221 1 245
Q ss_pred EEEecchhccchHHHHHHHHHHhC
Q 015822 265 SVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 265 ~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
++++||+++.|+++|++.|.+.+.
T Consensus 176 ~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 176 IIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeeCCCCCCHHHHHHHHHHhCC
Confidence 899999999999999999988664
No 231
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.32 E-value=6.7e-13 Score=137.07 Aligned_cols=83 Identities=29% Similarity=0.310 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC----------------CCCC------ccccceeeeeceEEEECCEeecccCccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH----------------SEAA------SYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~----------------~~vs------~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~ 120 (399)
..|+|+|.+|||||||+|+|++.. ..+. ..+|+|+......+.+++..+.++||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 389999999999999999996211 1112 237889988889999999999999999975
Q ss_pred cccccCcccchhhccccCChhhhHHHHhcCCc
Q 015822 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 121 ~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.. .......++.+|.+++|+|+...
T Consensus 94 df-------~~~~~~~l~~aD~allVvDa~~g 118 (528)
T 3tr5_A 94 DF-------TEDTYRTLTAVDSALMVIDAAKG 118 (528)
T ss_dssp TC-------CHHHHHGGGGCSEEEEEEETTTC
T ss_pred hH-------HHHHHHHHHhCCEEEEEEeCCCC
Confidence 32 12344556789999999998764
No 232
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.31 E-value=2.3e-12 Score=121.30 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCcccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~ 121 (399)
.+|+|+|.+|||||||+|+|+|... .++++++||.++....+.++|..+.++||||+..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~ 96 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC
Confidence 4899999999999999999999875 6889999999999999999999999999999864
No 233
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.31 E-value=6e-13 Score=137.85 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC------CCCccccceeeeeceEEEEC----CEeecccCccccccccccCcccchh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS------EAASYEFTTLTCIPGIIHYN----DTKIQLLDLPGIIEGASEGKGRGRQ 132 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~------~vs~~p~TT~~~~~G~i~~~----g~~i~~iD~~Gl~~~~~~~~~~~~q 132 (399)
.+|+|+|.+|||||||+|.+++... .++...+|+..|+.|.+.++ +..+.++|+||..... .....
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----~~~~~ 117 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----ASHQF 117 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT----TTCHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH----HHHHH
Confidence 4899999999999999999999762 23333444444444444443 4788999999942211 11111
Q ss_pred hccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhh
Q 015822 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI 212 (399)
Q Consensus 133 ~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~ 212 (399)
.++.+|++++|+|++.... ...+...+..
T Consensus 118 ---~l~~~d~ii~V~D~s~~~~-~~~~~~~l~~----------------------------------------------- 146 (535)
T 3dpu_A 118 ---FMTRSSVYMLLLDSRTDSN-KHYWLRHIEK----------------------------------------------- 146 (535)
T ss_dssp ---HHHSSEEEEEEECGGGGGG-HHHHHHHHHH-----------------------------------------------
T ss_pred ---HccCCcEEEEEEeCCCchh-HHHHHHHHHH-----------------------------------------------
Confidence 2456899999988764321 1111111110
Q ss_pred CCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh-----HHHHHc--CCCEEEecchhccchHHHHHHHHH
Q 015822 213 HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 213 ~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~-----~~~l~~--~~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
.....|+++|+||+|+..... ...... ..+++++||+++.|+++|.+.+.+
T Consensus 147 ----------------------~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 147 ----------------------YGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp ----------------------HSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHH
T ss_pred ----------------------hCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHH
Confidence 011369999999999874322 222221 134899999999999999999988
Q ss_pred HhC
Q 015822 286 EMG 288 (399)
Q Consensus 286 ~l~ 288 (399)
.+.
T Consensus 205 ~~~ 207 (535)
T 3dpu_A 205 AVL 207 (535)
T ss_dssp HHT
T ss_pred HHh
Confidence 774
No 234
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.29 E-value=8.5e-12 Score=124.95 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC---CCccccceeeeeceEEEE---------------C--C------EeecccC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHY---------------N--D------TKIQLLD 115 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~---vs~~p~TT~~~~~G~i~~---------------~--g------~~i~~iD 115 (399)
..+|+++|.+|+|||||+++|+|.... ....++.|++.......+ + | ..+.++|
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 358999999999999999999987532 122367787665433322 1 1 5789999
Q ss_pred ccccccccccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCC
Q 015822 116 LPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPL 195 (399)
Q Consensus 116 ~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpt 195 (399)
|||.... .......+..+|.+++|+|+.......+..+ .+.
T Consensus 88 tPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~------------------------------- 128 (408)
T 1s0u_A 88 SPGHETL-------MATMLSGASLMDGAILVIAANEPCPQPQTKE-HLM------------------------------- 128 (408)
T ss_dssp CSSHHHH-------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HHH-------------------------------
T ss_pred CCCHHHH-------HHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HHH-------------------------------
Confidence 9995321 1233444567899999999875320001000 000
Q ss_pred CCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhh----HHHHH---c-----CC
Q 015822 196 THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD----VDKLA---R-----QP 263 (399)
Q Consensus 196 s~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~----~~~l~---~-----~~ 263 (399)
+++. ...+|.++|+||+|+...++ .+.+. + ..
T Consensus 129 ----------~~~~--------------------------l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (408)
T 1s0u_A 129 ----------ALEI--------------------------LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENA 172 (408)
T ss_dssp ----------HHHH--------------------------TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTC
T ss_pred ----------HHHH--------------------------cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCC
Confidence 0000 01258999999999975431 22222 1 24
Q ss_pred CEEEecchhccchHHHHHHHHHHhC
Q 015822 264 NSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 264 ~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
+++++||+++.|+++|++.+.+.+.
T Consensus 173 ~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 173 PIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CEEEC------CHHHHHHHHHHHSC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 5899999999999999999988664
No 235
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.29 E-value=9.3e-13 Score=128.91 Aligned_cols=49 Identities=22% Similarity=0.170 Sum_probs=37.2
Q ss_pred ccEEEEEecCCCCChhhHH----HHH------c------CCCEEEecchhccchHHHHHHHHHHh
Q 015822 239 MKCVYVYNKIDVIGIDDVD----KLA------R------QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~~~~----~l~------~------~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.|.++|+||+|+....... .+. . .++++++||++|.|+++|.+.|.+.+
T Consensus 195 ~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 195 VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 5889999999998653322 221 1 24578999999999999999998765
No 236
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.29 E-value=1.4e-11 Score=121.69 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=44.8
Q ss_pred ccccccccchhhHhhcCce---------------eeeccCCCCCCHHHHHHHHHHhh---h-CCcEEEEcCCCCH
Q 015822 170 LNKRPPQIYFKKKKTGGIS---------------FNSTLPLTHVDEKLCYQILHEYK---I-HNAEVLFREDATV 225 (399)
Q Consensus 170 ~~~~~~~LS~g~kqr~~ia---------------li~DEpts~LD~~~v~~ll~~l~---~-~~~~v~vthd~~~ 225 (399)
+++++..||+||+||++|| +++||||++||+.....+++.+. . ..+++++|||+..
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~ 347 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF 347 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence 3568889999999999863 88999999999987666655553 2 3489999999754
No 237
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.28 E-value=1.6e-12 Score=128.57 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=55.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
.|+++|.+|+|||||+++|+ ..++|++.....+.+++..+.++||||... +.......++.+|.+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~-------f~~~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK-------TLKSLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTT-------CHHHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHH-------HHHHHHHHHHHCCEE
Confidence 79999999999999999998 467888877777777888999999999643 122334445778888
Q ss_pred HHHHh
Q 015822 144 LMVLD 148 (399)
Q Consensus 144 l~v~d 148 (399)
++++|
T Consensus 88 ilVvd 92 (370)
T 2elf_A 88 VLCIP 92 (370)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88888
No 238
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.28 E-value=8.7e-12 Score=117.73 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCcccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~ 121 (399)
.+|+++|.+|+|||||+|+|+|... .++++++||.++....+..++..+.++||||+..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~ 99 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 99 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCC
Confidence 4899999999999999999999874 6889999999999888889999999999999854
No 239
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.27 E-value=9.5e-12 Score=111.17 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=53.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEE--EC---CEeecccCccccccccccCcccchhhccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH--YN---DTKIQLLDLPGIIEGASEGKGRGRQVIAV 136 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~--~~---g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~ 136 (399)
..+|+|+|.+|||||||++.+++...+. +..+.++....+. +. ...+.++||||...... ........
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD----PTFDYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC----TTCCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHh----hhhhcccc
Confidence 3589999999999999999999965331 3333334444433 32 25788999998532110 01000234
Q ss_pred cCChhhhHHHHhcCCc
Q 015822 137 SKSSDIVLMVLDASKS 152 (399)
Q Consensus 137 ~~~~d~il~v~d~~~~ 152 (399)
++.+|++++|+|....
T Consensus 93 ~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD 108 (196)
T ss_dssp HHTCSEEEEEEETTSC
T ss_pred cccCCEEEEEEECCCc
Confidence 5778999999988764
No 240
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.25 E-value=4.5e-12 Score=126.79 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC---------C--C------CccccceeeeeceEEEECCEeecccCcccccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS---------E--A------ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE 125 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~---------~--v------s~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~ 125 (399)
.+|+++|.+|+|||||+++|++... . + ...+++|++.....+..++..+.++||||....
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f--- 88 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY--- 88 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG---
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH---
Confidence 5899999999999999999997310 0 0 013677877755555666789999999996531
Q ss_pred CcccchhhccccCChhhhHHHHhcCCc
Q 015822 126 GKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 126 ~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.......+..+|.+++++|+...
T Consensus 89 ----~~~~~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 89 ----IKNMITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp ----HHHHHHHHTTCSSEEEEEETTTC
T ss_pred ----HHHHHHHHHHCCEEEEEEECCCC
Confidence 22344456789999999988654
No 241
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.21 E-value=2.8e-11 Score=110.81 Aligned_cols=152 Identities=18% Similarity=0.244 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCcc-ccceeeeeceEEEECCE--eecccCccccccccccCcccchhhccccCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASY-EFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~-p~TT~~~~~G~i~~~g~--~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~ 139 (399)
-+|+|||.+|||||||++.++...-+ .+| |-...+...-.+.+++. .++++||+|..... .+ ....++.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~-~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----~l---~~~~~~~ 85 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----SL---IPSYIRD 85 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTTCG----GG---HHHHHTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCC-CCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh----hH---HHHHhcc
Confidence 47999999999999999998864422 222 22222333334555663 56789999853211 11 1123578
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEE
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~v 219 (399)
++.++++.|...... .+.+..++. .+.
T Consensus 86 a~~~ilv~di~~~~S-f~~i~~~~~--------------------------------------------~i~-------- 112 (216)
T 4dkx_A 86 SAAAVVVYDITNVNS-FQQTTKWID--------------------------------------------DVR-------- 112 (216)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHH--------------------------------------------HHH--------
T ss_pred ccEEEEEeecchhHH-HHHHHHHHH--------------------------------------------HHH--------
Confidence 888888888766432 122222211 111
Q ss_pred cCCCCHHHHHHHHhhccccccEEEEEecCCCCCh-----hhHHHHHcC--CCEEEecchhccchHHHHHHHHHHhC
Q 015822 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 220 thd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~-----~~~~~l~~~--~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.. .....|+++|.||+|+... ++...+.+. ..++.+||++|.|++++.+.|.+.+.
T Consensus 113 ----------~~---~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 113 ----------TE---RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp ----------HH---HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred ----------Hh---cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 00 0123699999999998643 233333221 24788999999999999998877663
No 242
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.21 E-value=2.8e-12 Score=126.00 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=34.4
Q ss_pred cccEEEEEecCCCCChhh--HHHHHc--------CCCEEEecchhccchHHHHHHHHH
Q 015822 238 YMKCVYVYNKIDVIGIDD--VDKLAR--------QPNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 238 ~~p~iiv~NK~Dl~~~~~--~~~l~~--------~~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
..|+++|+||+|+..... .+.+.. +..++++||+++.|+++|.+.+.+
T Consensus 197 ~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 197 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 469999999999975432 222211 123677899999999998888765
No 243
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.20 E-value=1.8e-12 Score=127.58 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=37.9
Q ss_pred ccEEEEEecCCCCChhhH----HHHHc------------CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 239 MKCVYVYNKIDVIGIDDV----DKLAR------------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~~~----~~l~~------------~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.|.++|+||+|+...... ..+.+ .++++++||++|.|+++|.+.|.+.+.
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 589999999998754322 12211 246999999999999999999988764
No 244
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.19 E-value=1.5e-11 Score=124.20 Aligned_cols=83 Identities=22% Similarity=0.210 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-----------CCCccccce----------------------eeeeceEEEECCE
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-----------EAASYEFTT----------------------LTCIPGIIHYNDT 109 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-----------~vs~~p~TT----------------------~~~~~G~i~~~g~ 109 (399)
.+|+++|.+|+|||||+|.|++... ..+.+++|| ++.....+..++.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 4899999999999999999986531 122344553 3333334455778
Q ss_pred eecccCccccccccccCcccchhhccccCChhhhHHHHhcCCc
Q 015822 110 KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 110 ~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.+.++||||.... .......+..+|.+++|+|+...
T Consensus 105 ~~~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g 140 (434)
T 1zun_B 105 KFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARYG 140 (434)
T ss_dssp EEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTTC
T ss_pred eEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCCC
Confidence 8999999995421 12333446789999999998654
No 245
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.19 E-value=1.4e-12 Score=133.52 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
.+|+|+|.+|+|||||+++|++.....+..+++|.+.....+.+++..+.++||||..... ......+..+|.
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~-------~~~~~~~~~aD~ 77 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT-------SMRARGAQATDI 77 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT-------TSBCSSSBSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH-------HHHHHHHhhCCE
Confidence 4899999999999999999998654455668888887777777788899999999964321 112233567899
Q ss_pred hHHHHhcCC
Q 015822 143 VLMVLDASK 151 (399)
Q Consensus 143 il~v~d~~~ 151 (399)
+++++|+..
T Consensus 78 aILVVda~~ 86 (501)
T 1zo1_I 78 VVLVVAADD 86 (501)
T ss_dssp EEEEEETTT
T ss_pred EEEEeeccc
Confidence 999988765
No 246
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.18 E-value=6.8e-11 Score=118.52 Aligned_cols=78 Identities=5% Similarity=0.069 Sum_probs=38.2
Q ss_pred cCceeeeccCC-CCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChhhHHHH----
Q 015822 185 GGISFNSTLPL-THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL---- 259 (399)
Q Consensus 185 ~~iali~DEpt-s~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~~~~~l---- 259 (399)
+.+.+++|||| .+||...+ .+++.+. ...|+|+|.||+|+....++..+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~-~~lk~L~-------------------------~~v~iIlVinK~Dll~~~ev~~~k~~i 192 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI-EFMKRLH-------------------------EKVNIIPLIAKADTLTPEECQQFKKQI 192 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH-HHHHHHT-------------------------TTSEEEEEEESTTSSCHHHHHHHHHHH
T ss_pred eeEEEEEecCcccCCCHHHH-HHHHHHh-------------------------ccCcEEEEEEcccCccHHHHHHHHHHH
Confidence 33458899999 58997653 3444332 13689999999999876554332
Q ss_pred ----H-cCCCEEEecchhccchHHHHHHHHHHhC
Q 015822 260 ----A-RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 260 ----~-~~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
. ....++.+||.++.+.+++...+.+.+.
T Consensus 193 ~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 193 MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 1 1234677899998888876666655443
No 247
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.18 E-value=5.1e-11 Score=111.57 Aligned_cols=50 Identities=18% Similarity=0.082 Sum_probs=37.7
Q ss_pred cccEEEEEecCCCCChhhH---HHHHc---CCCEEEecchhccchHHHHHHHHHHh
Q 015822 238 YMKCVYVYNKIDVIGIDDV---DKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 238 ~~p~iiv~NK~Dl~~~~~~---~~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
..|+++|+||+|+.....+ ..+.. ...++.+||+++.|++++.+.+.+.+
T Consensus 198 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 198 KKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3699999999999754333 22322 23588999999999999999887654
No 248
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.17 E-value=3.7e-12 Score=135.73 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=35.5
Q ss_pred cccEEEEEecCCCCChhh-HHHHHc---------CCCEEEecchhccchHHHHHHHHH
Q 015822 238 YMKCVYVYNKIDVIGIDD-VDKLAR---------QPNSVVISCNLKLNLDRLLARMWE 285 (399)
Q Consensus 238 ~~p~iiv~NK~Dl~~~~~-~~~l~~---------~~~~i~vSa~~~~gl~~L~~~i~~ 285 (399)
.+|+++|+||+|+..... ...+.. +.+++++||.++.|+++|.+++.+
T Consensus 217 g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 217 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 379999999999985432 122211 124788999999999999988876
No 249
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.17 E-value=9.9e-12 Score=126.34 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC-------------------------CCc------cccceeeeeceEEEECCEee
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSE-------------------------AAS------YEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~-------------------------vs~------~p~TT~~~~~G~i~~~g~~i 111 (399)
.+|+++|.+|+|||||+|.|++.... +.+ .+++|++.....+..++..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 48999999999999999999864110 111 25788888887888888999
Q ss_pred cccCccccccccccCcccchhhccccCChhhhHHHHhcCCc
Q 015822 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 112 ~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.++||||... +.......+..+|++++|+|+...
T Consensus 88 ~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 88 TVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHH
T ss_pred EEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcC
Confidence 9999999532 223344557889999999998653
No 250
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.16 E-value=1.5e-11 Score=124.18 Aligned_cols=82 Identities=21% Similarity=0.179 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCC-------------------------Cc------cccceeeeeceEEEECCEee
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEA-------------------------AS------YEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~v-------------------------s~------~p~TT~~~~~G~i~~~g~~i 111 (399)
.+|+++|.+|+|||||+++|++....+ .+ .+++|++.....+...+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 489999999999999999998531111 01 36788888887888888999
Q ss_pred cccCccccccccccCcccchhhccccCChhhhHHHHhcCC
Q 015822 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (399)
Q Consensus 112 ~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~ 151 (399)
.++||||.... .......++.+|.+++|+|+..
T Consensus 87 ~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 87 TIIDAPGHRDF-------VKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp EECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECST
T ss_pred EEEECCCcHHH-------HHHHHhhhhhcCEEEEEEECCC
Confidence 99999996532 1234445688999999999876
No 251
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.16 E-value=4e-11 Score=119.65 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC--------C--------CccccceeeeeceEEEECCEeecccCccccccccccC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSE--------A--------ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 126 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~--------v--------s~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~ 126 (399)
.+|+++|.+|+|||||+++|++.... . ....++|++...-.+..++..+.++||||....
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f---- 79 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY---- 79 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH----
Confidence 47999999999999999999974210 0 013456666544344446788999999997531
Q ss_pred cccchhhccccCChhhhHHHHhcCCc
Q 015822 127 KGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 127 ~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.......+..+|.+++++|+...
T Consensus 80 ---~~~~~~~~~~aD~~ilVvda~~g 102 (397)
T 1d2e_A 80 ---VKNMITGTAPLDGCILVVAANDG 102 (397)
T ss_dssp ---HHHHHHTSSCCSEEEEEEETTTC
T ss_pred ---HHHHHhhHhhCCEEEEEEECCCC
Confidence 12334456789999999998653
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.16 E-value=7.7e-12 Score=111.14 Aligned_cols=52 Identities=8% Similarity=-0.076 Sum_probs=41.5
Q ss_pred ccccccccchhhHhhcCc---------e-----eeecc--CCCCCCHHHHHHHHHHhhhCC-cEEEEcC
Q 015822 170 LNKRPPQIYFKKKKTGGI---------S-----FNSTL--PLTHVDEKLCYQILHEYKIHN-AEVLFRE 221 (399)
Q Consensus 170 ~~~~~~~LS~g~kqr~~i---------a-----li~DE--pts~LD~~~v~~ll~~l~~~~-~~v~vth 221 (399)
+++++..||+||+||+.+ + +++|| ||+++|+.....+.+.+...+ ++++++|
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 567788999999998643 2 78899 999999988777777776445 4888887
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.15 E-value=1.1e-12 Score=120.30 Aligned_cols=128 Identities=13% Similarity=-0.022 Sum_probs=65.1
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccc
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~ 130 (399)
.+++|++.+ |+.++|+||||||||||+++|+|.. + |.+.+ |.++.-... ......++++.
T Consensus 14 ~~isl~i~~--G~~~~lvGpsGsGKSTLl~~L~g~~-p-------------G~i~~-g~~~~~~~~---~~~~~~~i~~~ 73 (218)
T 1z6g_A 14 LVPRGSMNN--IYPLVICGPSGVGKGTLIKKLLNEF-P-------------NYFYF-SVSCTTRKK---REKEKEGVDYY 73 (218)
T ss_dssp --------C--CCCEEEECSTTSSHHHHHHHHHHHS-T-------------TTEEE-CCCEECSCC---CSSCCBTTTBE
T ss_pred cCCceecCC--CCEEEEECCCCCCHHHHHHHHHhhC-C-------------CcEEE-eecccCCCC---CcccccCCeEE
Confidence 378899988 7799999999999999999999964 1 45555 444321110 00112234444
Q ss_pred hhhccccCCh----hhhHHH-HhcCCcHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCc-----e---------ee
Q 015822 131 RQVIAVSKSS----DIVLMV-LDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGI-----S---------FN 190 (399)
Q Consensus 131 ~q~~~~~~~~----d~il~v-~d~~~~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~i-----a---------li 190 (399)
++....++.. +.+.+. +...........+.+.++...+ .++ ..+||||+||..+ + ++
T Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 74 FIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp ECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred ECCHHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 4332222110 000000 0000000012235556665443 222 5789999999998 4 45
Q ss_pred eccCCCCCCHH
Q 015822 191 STLPLTHVDEK 201 (399)
Q Consensus 191 ~DEpts~LD~~ 201 (399)
+||||+++|.+
T Consensus 151 Lde~~~~~d~~ 161 (218)
T 1z6g_A 151 LLSRLLTRNTE 161 (218)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHhcCCC
Confidence 67889988854
No 254
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.14 E-value=4.8e-11 Score=124.61 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC---CC------CCCc------cccceeeeeceEEEEC---C--EeecccCccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT---HS------EAAS------YEFTTLTCIPGIIHYN---D--TKIQLLDLPGIIEG 122 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~---~~------~vs~------~p~TT~~~~~G~i~~~---g--~~i~~iD~~Gl~~~ 122 (399)
..++|+|.+|+|||||++.|+.. .. .+.+ ..|.|++.....+.|. | ..+.++||||....
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 37999999999999999999642 11 0111 2466777777777774 2 67889999997542
Q ss_pred cccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHH
Q 015822 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (399)
Q Consensus 123 ~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~ 202 (399)
. ......++.+|.+++|+|+........ ..
T Consensus 87 ~-------~ev~r~l~~aD~aILVVDa~~gv~~qt-~~------------------------------------------ 116 (600)
T 2ywe_A 87 S-------YEVSRALAACEGALLLIDASQGIEAQT-VA------------------------------------------ 116 (600)
T ss_dssp H-------HHHHHHHHTCSEEEEEEETTTBCCHHH-HH------------------------------------------
T ss_pred H-------HHHHHHHHhCCEEEEEEECCCCccHHH-HH------------------------------------------
Confidence 1 223334567888888888876432111 00
Q ss_pred HHHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChh--h-HHHHHcC-----CCEEEecchhcc
Q 015822 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--D-VDKLARQ-----PNSVVISCNLKL 274 (399)
Q Consensus 203 v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~--~-~~~l~~~-----~~~i~vSa~~~~ 274 (399)
.+... .....|.++|+||+|+.... . .+.+.+. .+++++||++|.
T Consensus 117 --~~~~a-------------------------~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~ 169 (600)
T 2ywe_A 117 --NFWKA-------------------------VEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGI 169 (600)
T ss_dssp --HHHHH-------------------------HHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTB
T ss_pred --HHHHH-------------------------HHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCC
Confidence 00000 01136899999999997432 1 2333322 138999999999
Q ss_pred chHHHHHHHHHHhC
Q 015822 275 NLDRLLARMWEEMG 288 (399)
Q Consensus 275 gl~~L~~~i~~~l~ 288 (399)
|+++|++.+.+.+.
T Consensus 170 GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 170 GIEEILEAIVNRIP 183 (600)
T ss_dssp SHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHhcc
Confidence 99999999988764
No 255
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.13 E-value=3.9e-11 Score=106.33 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=48.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCC---CccccceeeeeceEEEECCEeecccCccccccccccCcccchhh-cccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEA---ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV-IAVS 137 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~v---s~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~-~~~~ 137 (399)
..+|+|+|++|||||||+|.|++..... +..|.+|.+. .+..+.++||||....... .... ...+
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~ 116 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYK----LSDYLKTRA 116 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSSCC----HHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHHHH----HHHHHHhhc
Confidence 3589999999999999999999876321 2334444332 5677889999997532111 1111 1223
Q ss_pred CChhhhHHHHhcC
Q 015822 138 KSSDIVLMVLDAS 150 (399)
Q Consensus 138 ~~~d~il~v~d~~ 150 (399)
..+|++++|+|+.
T Consensus 117 ~~~~~~i~v~d~~ 129 (193)
T 2ged_A 117 KFVKGLIFMVDST 129 (193)
T ss_dssp GGEEEEEEEEETT
T ss_pred ccCCEEEEEEECC
Confidence 4578899999887
No 256
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.12 E-value=2.1e-11 Score=119.96 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~ 87 (399)
.+|+|||.+|||||||+|+|+|...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Confidence 3899999999999999999999763
No 257
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.10 E-value=4.5e-11 Score=125.60 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~i 143 (399)
.+||+|+|||||||||++|+|...| +.+|.+.++|.++.+...+... .....+++.+|........++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P----------~~sG~vt~~g~~i~~~~~~~~~-~~~~~i~~v~Q~~~l~~~~tv- 114 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP----------RGSGIVTRCPLVLKLKKLVNED-KWRGKVSYQDYEIEISDASEV- 114 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-----------------CCCSCEEEEEEECSSSS-CCEEEESCC---CCCCCHHHH-
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC----------CCCCeEEEcCEEEEEecCCccc-cceeEEeeecccccCCCHHHH-
Confidence 5999999999999999999998633 1589999999887654432111 112334454544322221111
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCc-------eeeeccC------CCCCCHH---HHHHHH
Q 015822 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGI-------SFNSTLP------LTHVDEK---LCYQIL 207 (399)
Q Consensus 144 l~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~i-------ali~DEp------ts~LD~~---~v~~ll 207 (399)
.+.+......++. ....+|. +.-.+.+ .+++||| |++||.. .+.+++
T Consensus 115 ------------~e~i~~~~~~~~~----~~~~~s~-~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li 177 (608)
T 3szr_A 115 ------------EKEINKAQNAIAG----EGMGISH-ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLI 177 (608)
T ss_dssp ------------HTTHHHHHHHHHC----SSSCCCS-CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHH
T ss_pred ------------HHHHHHHHHHhcC----Cccccch-HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHH
Confidence 0111111111111 0001110 0000111 1788999 9999976 455666
Q ss_pred HHhh-hCC--cEEEEcCCCCHH-----HHHHHHhhccccccEEEEEecCCCCCh
Q 015822 208 HEYK-IHN--AEVLFREDATVD-----DLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (399)
Q Consensus 208 ~~l~-~~~--~~v~vthd~~~~-----~~~~~i~~~~~~~p~iiv~NK~Dl~~~ 253 (399)
..|. .+. .+++++|+.+.. .+++.+. ....++|+|+||+|++..
T Consensus 178 ~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~--~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 178 KKYIQRQETISLVVVPSNVDIATTEALSMAQEVD--PEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC--SSCCSEEEEEECGGGSSS
T ss_pred HHHHhcCCCCceEEEeccchhccHHHHHHHHHHh--hcCCceEEEecchhhcCc
Confidence 6653 232 567888987643 2333332 234689999999998744
No 258
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.10 E-value=5.4e-11 Score=123.50 Aligned_cols=73 Identities=18% Similarity=0.105 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCCCCCC-CCCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCCccccce
Q 015822 21 KATEYHLGQLKAKIAKLRTQLLEPPKGSS-GAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS---EAASYEFTT 96 (399)
Q Consensus 21 k~t~~~~~~l~~~l~~l~~~~~~~~~~~~-~~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~---~vs~~p~TT 96 (399)
..++.+....++++..++++..-..-... -....+ ..-.+|+|+|.+|||||||+|+|+|... ++++.|+||
T Consensus 27 ~~~~~L~~~y~~~i~~le~~~~~~~~~~~~l~~~~~----~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~ 102 (550)
T 2qpt_A 27 TVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADF----DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD 102 (550)
T ss_dssp CHHHHHHHHHHHHTHHHHHHTTGGGTTCCCCCSTTT----SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC
T ss_pred HHHHHHHHHHHHhhhhHHHHhccccccchhcccccc----cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc
Confidence 34566666667777777655221100000 000000 1135999999999999999999999875 588899987
Q ss_pred e
Q 015822 97 L 97 (399)
Q Consensus 97 ~ 97 (399)
+
T Consensus 103 ~ 103 (550)
T 2qpt_A 103 C 103 (550)
T ss_dssp S
T ss_pred e
Confidence 6
No 259
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.10 E-value=3.2e-12 Score=123.00 Aligned_cols=144 Identities=8% Similarity=-0.049 Sum_probs=78.9
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCc-cccccc-cccCccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEG-ASEGKGR 129 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~-~Gl~~~-~~~~~~~ 129 (399)
.++|.+.+ |..++|+|+||||||||++.|+|...+ ..|.+.+.|.++.-... ..+... ...++++
T Consensus 92 ~l~~~~~~--g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~ 158 (302)
T 3b9q_A 92 ELQLGFRK--PAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAGDTFRAAASDQLEIWAERTGCEI 158 (302)
T ss_dssp SCCCCSSS--CEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred ccccccCC--CcEEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEeecccchhHHHHHHHHHHhcCceE
Confidence 35555554 789999999999999999999998644 67889887765421100 000000 0123444
Q ss_pred chhhcc-ccCCh---hhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce-----------eeec
Q 015822 130 GRQVIA-VSKSS---DIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-----------FNST 192 (399)
Q Consensus 130 ~~q~~~-~~~~~---d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia-----------li~D 192 (399)
..|... ..+.. +.+.+... ... + ..+++.+|+ ..++.+.+|| +||..++ +++|
T Consensus 159 v~q~~~~~~~~~~v~e~l~~~~~-~~~--d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 159 VVAEGDKAKAATVLSKAVKRGKE-EGY--D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp ECCC--CCCHHHHHHHHHHHHHH-TTC--S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred EEecCCccCHHHHHHHHHHHHHH-cCC--c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 444322 11110 11111000 000 0 011233344 3345567788 5666543 8889
Q ss_pred cCCCCCCHHHHHHHHHHhh--hCCcEEEEcCC
Q 015822 193 LPLTHVDEKLCYQILHEYK--IHNAEVLFRED 222 (399)
Q Consensus 193 Epts~LD~~~v~~ll~~l~--~~~~~v~vthd 222 (399)
||+++|..... +.+. ..-+.+++||.
T Consensus 229 -ptsglD~~~~~---~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 229 -GNTGLNMLPQA---REFNEVVGITGLILTKL 256 (302)
T ss_dssp -GGGGGGGHHHH---HHHHHHTCCCEEEEECC
T ss_pred -CCCCcCHHHHH---HHHHHhcCCCEEEEeCC
Confidence 99999986432 3343 23488899994
No 260
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.09 E-value=1.1e-10 Score=124.23 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh---CCCC---------CCCc------cccceeeeeceEEEECCEeecccCccccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLT---GTHS---------EAAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 124 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~---g~~~---------~vs~------~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~ 124 (399)
..|+|+|.+|+|||||+|.|+ |... .+.+ .+++|+....+.+.+++..+.++||||....
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 88 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF-- 88 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch--
Confidence 489999999999999999998 4321 1223 4688999988999999999999999997532
Q ss_pred cCcccchhhccccCChhhhHHHHhcCCc
Q 015822 125 EGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 125 ~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.......++.+|.+++++|+...
T Consensus 89 -----~~~~~~~l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 89 -----TVEVERSLRVLDGAVTVLDAQSG 111 (693)
T ss_dssp -----CHHHHHHHHHCSEEEEEEETTTB
T ss_pred -----HHHHHHHHHHCCEEEEEECCCCC
Confidence 12344456779999999998764
No 261
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.09 E-value=5.4e-11 Score=124.35 Aligned_cols=148 Identities=18% Similarity=0.247 Sum_probs=86.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC---------CCc------cccceeeeeceEEEEC-----CEeecccCcccccccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSE---------AAS------YEFTTLTCIPGIIHYN-----DTKIQLLDLPGIIEGA 123 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~---------vs~------~p~TT~~~~~G~i~~~-----g~~i~~iD~~Gl~~~~ 123 (399)
.++|+|.+|+|||||++.|+..... +.+ ..|.|++.....+.|. +..+.++||||.....
T Consensus 6 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~ 85 (599)
T 3cb4_D 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFS 85 (599)
T ss_dssp EEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHH
Confidence 7999999999999999999753211 111 2466777666667664 2678899999975321
Q ss_pred ccCcccchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHH
Q 015822 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLC 203 (399)
Q Consensus 124 ~~~~~~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v 203 (399)
......++.+|.+++|+|+........ .
T Consensus 86 -------~ev~~~l~~aD~aILVVDa~~gv~~qt---------------------------------------------~ 113 (599)
T 3cb4_D 86 -------YEVSRSLAACEGALLVVDAGQGVEAQT---------------------------------------------L 113 (599)
T ss_dssp -------HHHHHHHHHCSEEEEEEETTTCCCTHH---------------------------------------------H
T ss_pred -------HHHHHHHHHCCEEEEEEECCCCCCHHH---------------------------------------------H
Confidence 223334566788888888765321111 0
Q ss_pred HHHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccccccEEEEEecCCCCChh---hHHHHH---cC--CCEEEecchhccc
Q 015822 204 YQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLA---RQ--PNSVVISCNLKLN 275 (399)
Q Consensus 204 ~~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~~~p~iiv~NK~Dl~~~~---~~~~l~---~~--~~~i~vSa~~~~g 275 (399)
..+... . ....|.++|+||+|+.... ..+.+. .. .+++++||++|.|
T Consensus 114 ~~~~~~----------------------~---~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~G 168 (599)
T 3cb4_D 114 ANCYTA----------------------M---EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVG 168 (599)
T ss_dssp HHHHHH----------------------H---HTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTT
T ss_pred HHHHHH----------------------H---HCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCC
Confidence 000000 0 0136999999999997532 123332 22 2489999999999
Q ss_pred hHHHHHHHHHHhC
Q 015822 276 LDRLLARMWEEMG 288 (399)
Q Consensus 276 l~~L~~~i~~~l~ 288 (399)
+++|++.+.+.+.
T Consensus 169 I~~Ll~~I~~~lp 181 (599)
T 3cb4_D 169 VQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHHHHHSC
T ss_pred chhHHHHHhhcCC
Confidence 9999999988764
No 262
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.07 E-value=4.6e-11 Score=121.69 Aligned_cols=83 Identities=23% Similarity=0.206 Sum_probs=50.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-------------------------CCCc------cccceeeeeceEEEECCEee
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS-------------------------EAAS------YEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~-------------------------~vs~------~p~TT~~~~~G~i~~~g~~i 111 (399)
..|+++|.+|+|||||++.|+.... .+.+ ..++|++.....+.+++..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 4899999999999999999963211 0111 35788888777888889999
Q ss_pred cccCccccccccccCcccchhhccccCChhhhHHHHhcCCc
Q 015822 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 112 ~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.++||||.... .......+..+|.+++|+|+...
T Consensus 124 ~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 124 SLLDAPGHKGY-------VTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EECCCCC------------------TTSCSEEEEEEECSTT
T ss_pred EEEECCCcHHH-------HHHHHhhcccCCEEEEEEeCCcC
Confidence 99999996431 22334456789999999998764
No 263
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.06 E-value=2.2e-10 Score=118.27 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC----------------CC------ccccceeeeeceEEEECCEeecccCccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSE----------------AA------SYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~----------------vs------~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~ 120 (399)
..|+|+|.+|||||||++.|++.... +. ...++|++.....+.+++..+.++||||..
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 48999999999999999999863211 11 134566666667788899999999999974
Q ss_pred cccccCcccchhhccccCChhhhHHHHhcCCc
Q 015822 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 121 ~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.. .......++.+|.+++|+|+...
T Consensus 94 df-------~~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 94 DF-------SEDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp TC-------CHHHHHGGGGCSEEEEEEETTTC
T ss_pred hH-------HHHHHHHHHHCCEEEEEEeCCcc
Confidence 31 12344456789999999998764
No 264
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.05 E-value=3.2e-10 Score=120.75 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh---CCCCC---------CCc------cccceeeeeceEEEECCEeecccCccccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLT---GTHSE---------AAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 124 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~---g~~~~---------vs~------~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~ 124 (399)
..|+|+|.+|+|||||++.|+ |.... +.+ ..++|+......+.+++..+.++||||....
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 90 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF-- 90 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC--
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch--
Confidence 489999999999999999998 33211 112 4578888888888999999999999997431
Q ss_pred cCcccchhhccccCChhhhHHHHhcCCc
Q 015822 125 EGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 125 ~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.......++.+|.+++++|+...
T Consensus 91 -----~~~~~~~l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 91 -----TIEVERSMRVLDGAIVVFDSSQG 113 (691)
T ss_dssp -----HHHHHHHHHHCSEEEEEEETTTC
T ss_pred -----HHHHHHHHHHCCEEEEEEECCCC
Confidence 12334455678999999998754
No 265
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.05 E-value=3.9e-11 Score=116.89 Aligned_cols=110 Identities=9% Similarity=-0.021 Sum_probs=73.9
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhh
Q 015822 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (399)
Q Consensus 54 ~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~ 133 (399)
++.+.. |..++|+|+||||||||+|+|+|...+ ..|.+.++|.+. +..+.. ...+++
T Consensus 165 ~~~i~~--g~~v~i~G~~GsGKTTll~~l~g~~~~-----------~~g~i~i~~~~e--~~~~~~----~~~i~~---- 221 (330)
T 2pt7_A 165 KDGIAI--GKNVIVCGGTGSGKTTYIKSIMEFIPK-----------EERIISIEDTEE--IVFKHH----KNYTQL---- 221 (330)
T ss_dssp HHHHHH--TCCEEEEESTTSCHHHHHHHGGGGSCT-----------TSCEEEEESSCC--CCCSSC----SSEEEE----
T ss_pred hhhccC--CCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCcEEEECCeec--cccccc----hhEEEE----
Confidence 344444 679999999999999999999999755 789999987531 111100 000000
Q ss_pred ccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCce---------eeeccCCCCCCHHHHH
Q 015822 134 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCY 204 (399)
Q Consensus 134 ~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~~v~ 204 (399)
+.. +|++|+.+++ +++|||++ ..+.
T Consensus 222 ---~~g---------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~----~e~~ 255 (330)
T 2pt7_A 222 ---FFG---------------------------------------GNITSADCLKSCLRMRPDRIILGELRS----SEAY 255 (330)
T ss_dssp ---ECB---------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS----THHH
T ss_pred ---EeC---------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh----HHHH
Confidence 000 3555665554 88999998 2356
Q ss_pred HHHHHhhhCC-cEEEEcCCCCHHHHHHHH
Q 015822 205 QILHEYKIHN-AEVLFREDATVDDLIDVI 232 (399)
Q Consensus 205 ~ll~~l~~~~-~~v~vthd~~~~~~~~~i 232 (399)
++++.+...+ ++++++|+.+..+.++.+
T Consensus 256 ~~l~~~~~g~~tvi~t~H~~~~~~~~dri 284 (330)
T 2pt7_A 256 DFYNVLCSGHKGTLTTLHAGSSEEAFIRL 284 (330)
T ss_dssp HHHHHHHTTCCCEEEEEECSSHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEcccHHHHHhhhh
Confidence 6777776555 689999999887777655
No 266
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.05 E-value=6.5e-12 Score=113.85 Aligned_cols=31 Identities=29% Similarity=0.242 Sum_probs=24.9
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 015822 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (399)
Q Consensus 55 ~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~ 87 (399)
.++.+ |++++|+||||||||||+++|+|...
T Consensus 15 ~~i~~--Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAV--GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----C--CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCC--CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35566 78999999999999999999999864
No 267
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.04 E-value=2.2e-10 Score=119.78 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=49.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccc-cceeeeeceEEEE------------------CCEeecccCcccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYE-FTTLTCIPGIIHY------------------NDTKIQLLDLPGIIEGA 123 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p-~TT~~~~~G~i~~------------------~g~~i~~iD~~Gl~~~~ 123 (399)
.+|+|+|.+|+|||||+++|++.... ...| +.|.+...-.+.+ ....+.++||||.....
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~-~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCc-cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 48999999999999999999875321 1122 3333211111111 11247899999964321
Q ss_pred ccCcccchhhccccCChhhhHHHHhcCC
Q 015822 124 SEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (399)
Q Consensus 124 ~~~~~~~~q~~~~~~~~d~il~v~d~~~ 151 (399)
. .....++.+|.+++|+|+..
T Consensus 85 ~-------~~~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 85 T-------LRKRGGALADLAILIVDINE 105 (594)
T ss_dssp T-------SBCSSSBSCSEEEEEEETTT
T ss_pred H-------HHHHHHhhCCEEEEEEECCC
Confidence 1 11123567899999999876
No 268
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.03 E-value=2.2e-09 Score=104.76 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=42.0
Q ss_pred cccccccchhhHhhc------Cce---------eeeccCCCCCCHHHHHHHHHHh---hh-CCcEEEEcCCCCHHH
Q 015822 171 NKRPPQIYFKKKKTG------GIS---------FNSTLPLTHVDEKLCYQILHEY---KI-HNAEVLFREDATVDD 227 (399)
Q Consensus 171 ~~~~~~LS~g~kqr~------~ia---------li~DEpts~LD~~~v~~ll~~l---~~-~~~~v~vthd~~~~~ 227 (399)
++++..||+||+|++ +++ +++||||++||+.....++..+ .. ..+++++|||..+.+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~ 318 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 318 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH
Confidence 467889999999954 332 8999999999998655555444 32 238999999965433
No 269
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.03 E-value=1.1e-11 Score=121.95 Aligned_cols=144 Identities=9% Similarity=-0.037 Sum_probs=78.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCc-ccccc-ccccCccc
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIE-GASEGKGR 129 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~-~Gl~~-~~~~~~~~ 129 (399)
.++|++.+ |..++|+|+||||||||++.|+|...+ ..|.+.+.|.++.-... ..+.. ....++++
T Consensus 149 ~l~l~~~~--g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~ 215 (359)
T 2og2_A 149 ELQLGFRK--PAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAGDTFRAAASDQLEIWAERTGCEI 215 (359)
T ss_dssp SCCCCSSS--SEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred CcceecCC--CeEEEEEcCCCChHHHHHHHHHhhccc-----------cCCEEEEecccccccchhHHHHHHHHhcCeEE
Confidence 35555554 789999999999999999999998644 67888887765421100 00000 01123444
Q ss_pred chhhcc-ccCC---hhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce-----------eeec
Q 015822 130 GRQVIA-VSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-----------FNST 192 (399)
Q Consensus 130 ~~q~~~-~~~~---~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia-----------li~D 192 (399)
..|... ..+. .+.+.+... ... + ..+++.+|+ ..++.+.+|| +||..++ |++|
T Consensus 216 v~q~~~~~~p~~tv~e~l~~~~~-~~~--d----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 216 VVAEGDKAKAATVLSKAVKRGKE-EGY--D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp ECCSSSSCCHHHHHHHHHHHHHH-TTC--S----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred EEecccccChhhhHHHHHHHHHh-CCC--H----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 444321 1111 011111100 000 0 011223344 2345567788 5665543 8889
Q ss_pred cCCCCCCHHHHHHHHHHhh--hCCcEEEEcCC
Q 015822 193 LPLTHVDEKLCYQILHEYK--IHNAEVLFRED 222 (399)
Q Consensus 193 Epts~LD~~~v~~ll~~l~--~~~~~v~vthd 222 (399)
||+++|..... +.+. ..-+.+++||.
T Consensus 286 -pttglD~~~~~---~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA---REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH---HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH---HHHHHhcCCeEEEEecC
Confidence 99999986432 3333 23488899994
No 270
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.00 E-value=8.5e-11 Score=115.85 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcc-c------ccee--eeeceEEEECCE--eecccCccccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEAASY-E------FTTL--TCIPGIIHYNDT--KIQLLDLPGII 120 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~vs~~-p------~TT~--~~~~G~i~~~g~--~i~~iD~~Gl~ 120 (399)
.|+|+|++|+|||||+|+|.+.......+ | ..|+ +.....+..+|. .+.++||||+.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 68999999999999999999876443333 1 1233 322233344554 67889999974
No 271
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.99 E-value=3.5e-10 Score=119.99 Aligned_cols=83 Identities=23% Similarity=0.274 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC------------CCc------cccceeeeeceEEEECCEeecccCcccccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE------------AAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA 123 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~------------vs~------~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~ 123 (399)
+..++|+|++|+|||||+++|++.... +.+ ..+.|+.+....+.+.+..+.++||||....
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f- 87 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF- 87 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG-
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch-
Confidence 569999999999999999999954321 111 1356777777778888899999999986431
Q ss_pred ccCcccchhhccccCChhhhHHHHhcCC
Q 015822 124 SEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (399)
Q Consensus 124 ~~~~~~~~q~~~~~~~~d~il~v~d~~~ 151 (399)
.......++.+|..++++|+..
T Consensus 88 ------~~~~~~~l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 88 ------VGEIRGALEAADAALVAVSAEA 109 (665)
T ss_dssp ------HHHHHHHHHHCSEEEEEEETTT
T ss_pred ------HHHHHHHHhhcCcEEEEEcCCc
Confidence 1122333445666666666543
No 272
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.99 E-value=1.1e-10 Score=112.70 Aligned_cols=110 Identities=12% Similarity=-0.075 Sum_probs=62.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d 141 (399)
|..|||+|+||||||||+++|+|...+ ..|. ....+...|. .+... ...+.......
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~-----------~~G~---~~v~~v~qd~-~~~~~------t~~e~~~~~~~-- 146 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR-----------WDHH---PRVDLVTTDG-FLYPN------AELQRRNLMHR-- 146 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT-----------STTC---CCEEEEEGGG-GBCCH------HHHHHTTCTTC--
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc-----------cCCC---CeEEEEecCc-cCCcc------cHHHHHHHHHh--
Confidence 689999999999999999999998644 2221 0000101110 00000 00000000000
Q ss_pred hhHHHHhcCCcHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCce---------eeeccCCCCCCH
Q 015822 142 IVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (399)
Q Consensus 142 ~il~v~d~~~~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~ 200 (399)
.......+.+.+.+.|+.++- ..+.+++.||+|++||++++ +++|||+..+|.
T Consensus 147 ------~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 ------KGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp ------TTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ------cCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 001111223455666666653 33467899999999999876 899999987763
No 273
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.97 E-value=1.3e-10 Score=105.43 Aligned_cols=50 Identities=10% Similarity=0.138 Sum_probs=37.1
Q ss_pred ccEEEEEecCCCCChh--hHH----HHHc---CCCEEEecchhccchHHHHHHHHHHhC
Q 015822 239 MKCVYVYNKIDVIGID--DVD----KLAR---QPNSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~--~~~----~l~~---~~~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
.|.++|+||+|+.... ..+ .+.+ ..+++++||.+|.|+++|.+.+.+.+.
T Consensus 155 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 155 VADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred cCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 6899999999986321 222 2222 235899999999999999999988764
No 274
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.94 E-value=7.1e-10 Score=121.96 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC----------------CCCccccceeeeeceEEEECCEeecccCccccccccccC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS----------------EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 126 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~----------------~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~ 126 (399)
.+|+++|.+|+|||||++.|++... +.....|+|++...-.+...+..+.++||||....
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF---- 372 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY---- 372 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH----
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH----
Confidence 4799999999999999999987410 01123566776654445556788999999997532
Q ss_pred cccchhhccccCChhhhHHHHhcCCc
Q 015822 127 KGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 127 ~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.......+..+|.+++|+|+...
T Consensus 373 ---~~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 373 ---VKNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp ---HHHHHHTSCCCSEEEEEEETTTC
T ss_pred ---HHHHHHHHhhCCEEEEEEcCCcc
Confidence 12334456789999999988653
No 275
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.89 E-value=3.1e-09 Score=100.02 Aligned_cols=117 Identities=17% Similarity=0.036 Sum_probs=71.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeee-ceEEEECCEeecccCccccccccccCcccchhhccccCCh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~-~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
|..++|+||||||||||+++|+|...+ . .|.+.++|.++.++-. ...++..|....+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~-----------~~~G~I~~~g~~i~~~~~--------~~~~~v~q~~~gl--- 82 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIEDPIEYVFK--------HKKSIVNQREVGE--- 82 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHH-----------HCCCEEEEEESSCCSCCC--------CSSSEEEEEEBTT---
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCC-----------CCCCEEEEcCCcceeecC--------CcceeeeHHHhCC---
Confidence 679999999999999999999998543 5 7999887766544310 0011111100000
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
+ ... -...+...|.. .| =.+++|||+ |.+.+..+++......++++++
T Consensus 83 ~-------~~~---l~~~la~aL~~-------~p------------~illlDEp~---D~~~~~~~l~~~~~g~~vl~t~ 130 (261)
T 2eyu_A 83 D-------TKS---FADALRAALRE-------DP------------DVIFVGEMR---DLETVETALRAAETGHLVFGTL 130 (261)
T ss_dssp T-------BSC---HHHHHHHHHHH-------CC------------SEEEESCCC---SHHHHHHHHHHHHTTCEEEEEE
T ss_pred C-------HHH---HHHHHHHHHhh-------CC------------CEEEeCCCC---CHHHHHHHHHHHccCCEEEEEe
Confidence 0 000 00111111110 00 127889999 8888887777655555899999
Q ss_pred CCCCHHHHHHHH
Q 015822 221 EDATVDDLIDVI 232 (399)
Q Consensus 221 hd~~~~~~~~~i 232 (399)
|+.+....++.+
T Consensus 131 H~~~~~~~~dri 142 (261)
T 2eyu_A 131 HTNTAIDTIHRI 142 (261)
T ss_dssp CCSSHHHHHHHH
T ss_pred CcchHHHHHHHH
Confidence 998877777665
No 276
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.85 E-value=6.8e-10 Score=112.02 Aligned_cols=153 Identities=10% Similarity=0.084 Sum_probs=87.1
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE---eecccCcccc-ccccccCcccc
Q 015822 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT---KIQLLDLPGI-IEGASEGKGRG 130 (399)
Q Consensus 55 ~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~---~i~~iD~~Gl-~~~~~~~~~~~ 130 (399)
|.+.+ |++++|+|+||||||||+++|+|...+ ..|.+.+.|. ++.-+...-. .......+++.
T Consensus 152 l~i~~--Gq~~~IvG~sGsGKSTLl~~Iag~~~~-----------~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v 218 (438)
T 2dpy_A 152 LTVGR--GQRMGLFAGSGVGKSVLLGMMARYTRA-----------DVIVVGLIGERGREVKDFIENILGPDGRARSVVIA 218 (438)
T ss_dssp SCCBT--TCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEE
T ss_pred EEecC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CeEEEEEeceecHHHHHHHHhhccccccCceEEEE
Confidence 66666 789999999999999999999998654 7899999886 3322100000 00011112233
Q ss_pred hhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcC--C-cccccccccchhhHhhcCceeeeccC--CCCCCHHHHHH
Q 015822 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVG--L-RLNKRPPQIYFKKKKTGGISFNSTLP--LTHVDEKLCYQ 205 (399)
Q Consensus 131 ~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~g--i-~~~~~~~~LS~g~kqr~~iali~DEp--ts~LD~~~v~~ 205 (399)
+|.. ....... .+ ........+.+...+ + .+-.....+|+|+ ||++++ +.+| |++||+.....
T Consensus 219 ~q~~-----~~~~~~~-~v---~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA--l~~p~~t~glD~~~~~~ 286 (438)
T 2dpy_A 219 APAD-----VSPLLRM-QG---AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA--IGEPPATKGYPPSVFAK 286 (438)
T ss_dssp ECTT-----SCHHHHH-HH---HHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--TTCCCCSSSCCTTHHHH
T ss_pred ECCC-----CCHHHHH-HH---HHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--hCCCcccccCCHHHHHH
Confidence 3210 0000000 00 000000011111111 1 1223367899999 999988 6666 88999986555
Q ss_pred HHHHhh---h---C-C------cEEEEcCCCCHHHHHHHHh
Q 015822 206 ILHEYK---I---H-N------AEVLFREDATVDDLIDVIE 233 (399)
Q Consensus 206 ll~~l~---~---~-~------~~v~vthd~~~~~~~~~i~ 233 (399)
+.+.+. . . + ++++++||++ +.++|.+.
T Consensus 287 l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~ 326 (438)
T 2dpy_A 287 LPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSAR 326 (438)
T ss_dssp HHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEE
Confidence 555553 3 2 4 6888999998 67777653
No 277
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.84 E-value=1.3e-09 Score=103.67 Aligned_cols=58 Identities=31% Similarity=0.440 Sum_probs=38.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-CCCCccccceeeeeceEEEECCEeecccCccccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~-~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~ 122 (399)
+.+++|+|.||+|||||+|+|+|.. ..+++.||||+++. .+.+ +..+.++||||+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGILWP 178 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCCCS
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcCCC
Confidence 4589999999999999999999988 57999999999986 3444 457889999999753
No 278
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.84 E-value=5.7e-09 Score=111.29 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC---CCCC---------CCc------cccceeeeeceEEEECC-------EeecccCcc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTG---THSE---------AAS------YEFTTLTCIPGIIHYND-------TKIQLLDLP 117 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g---~~~~---------vs~------~p~TT~~~~~G~i~~~g-------~~i~~iD~~ 117 (399)
..|+|+|..|+|||||++.|+. .... +.+ ..+.|+......+.+++ ..+.++|||
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP 90 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP 90 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence 4899999999999999999953 2211 111 24667777777778877 889999999
Q ss_pred ccccccccCcccchhhccccCChhhhHHHHhcCCc
Q 015822 118 GIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 118 Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
|.... .......++.+|.+++++|+...
T Consensus 91 G~~df-------~~~~~~~l~~aD~aIlVvDa~~g 118 (704)
T 2rdo_7 91 GHVDF-------TIEVERSMRVLDGAVMVYCAVGG 118 (704)
T ss_pred Cccch-------HHHHHHHHHHCCEEEEEEeCCCC
Confidence 97531 12334456779999999998764
No 279
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.83 E-value=1.4e-09 Score=98.26 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCC---CccccceeeeeceEEEECCEeecccCccccccccccCcccchhhc-cccC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEA---ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVI-AVSK 138 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~v---s~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~-~~~~ 138 (399)
..|+|+|++|||||||++.|++..... +..|.++.+. .+..+.++||||....... ....+ ....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~ 81 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYK----LSDYLKTRAK 81 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGTHH----HHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHHHH----HHHHHHhccc
Confidence 589999999999999999999876321 2234333332 4567888999997432111 11111 1112
Q ss_pred ChhhhHHHHhcC
Q 015822 139 SSDIVLMVLDAS 150 (399)
Q Consensus 139 ~~d~il~v~d~~ 150 (399)
.+|.+++|+|..
T Consensus 82 ~~~~~i~v~D~~ 93 (218)
T 1nrj_B 82 FVKGLIFMVDST 93 (218)
T ss_dssp GEEEEEEEEETT
T ss_pred cCCEEEEEEECC
Confidence 367888888876
No 280
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.83 E-value=8.5e-10 Score=108.06 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=85.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccch
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~ 131 (399)
++ |.+.+ |++++|+|+||||||||+++|+|...+ +.|.+.+.|....-+ ..+... .+ .
T Consensus 64 ~l-l~i~~--Gq~~gIiG~nGaGKTTLl~~I~g~~~~-----------~~g~i~~~G~~~~ev--~~~i~~----~~--~ 121 (347)
T 2obl_A 64 GL-LTCGI--GQRIGIFAGSGVGKSTLLGMICNGASA-----------DIIVLALIGERGREV--NEFLAL----LP--Q 121 (347)
T ss_dssp HH-SCEET--TCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESCCHHHH--HHHHTT----SC--H
T ss_pred ee-eeecC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CEEEEEEecccHHHH--HHHHHh----hh--h
Confidence 44 66776 789999999999999999999998654 678888766431100 000000 00 0
Q ss_pred hhccccCChhhhHHHHhcC-CcHHHHHH------HHHHHHHcCC---cccccccccchhhHhhcCceeeeccC-CCCCCH
Q 015822 132 QVIAVSKSSDIVLMVLDAS-KSEGHRQI------LTKELEAVGL---RLNKRPPQIYFKKKKTGGISFNSTLP-LTHVDE 200 (399)
Q Consensus 132 q~~~~~~~~d~il~v~d~~-~~~~~~~~------i~~~L~~~gi---~~~~~~~~LS~g~kqr~~iali~DEp-ts~LD~ 200 (399)
. .++.. +.++.... .+...... +.+.+...+- .+-..+..||+|+ |+++++ +.+.| |+++|+
T Consensus 122 ~---~~~~~--v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~~p~~t~Gldp 194 (347)
T 2obl_A 122 S---TLSKC--VLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SGEPDVRGGFPP 194 (347)
T ss_dssp H---HHTTE--EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TTCCCCBTTBCH
T ss_pred h---hhhce--EEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cCCCCcccCCCH
Confidence 0 00000 00000000 00000000 1111111121 1225678999999 899988 34445 579999
Q ss_pred HHHHHHHHHhh---h--CC------cEEEEcCCCCHHHHHHHHh
Q 015822 201 KLCYQILHEYK---I--HN------AEVLFREDATVDDLIDVIE 233 (399)
Q Consensus 201 ~~v~~ll~~l~---~--~~------~~v~vthd~~~~~~~~~i~ 233 (399)
.....+.+.+. . .+ ++++.+||++ +.++|.+.
T Consensus 195 ~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~ 237 (347)
T 2obl_A 195 SVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVR 237 (347)
T ss_dssp HHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheE
Confidence 86655555553 2 23 5788999998 77777754
No 281
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.81 E-value=2.9e-11 Score=124.91 Aligned_cols=144 Identities=11% Similarity=0.049 Sum_probs=85.2
Q ss_pred Ccce-EEEEeCCeEEEEEcCCCCcHHHHHHH--HhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcc
Q 015822 52 GEGF-EVTKFGHGRVALIGFPSVGKSTLLTL--LTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 128 (399)
Q Consensus 52 ~~~~-~v~~~~g~~valvG~~gaGKSTLln~--L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~ 128 (399)
+++| .+.+ |+.++|+|+||||||||+++ ++|...+ ..|.+.++|.+... .+. ......+
T Consensus 30 ~i~~G~i~~--Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-----------~~g~i~v~g~~~~~----~~~-~~~~~~g 91 (525)
T 1tf7_A 30 DISHGGLPI--GRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----------DEPGVFVTFEETPQ----DII-KNARSFG 91 (525)
T ss_dssp HHTTSSEET--TSEEEEEESTTSSHHHHHHHHHHHHHHHH-----------CCCEEEEESSSCHH----HHH-HHHGGGT
T ss_pred HhcCCCCCC--CeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCCEEEEEEeCCHH----HHH-HHHHHcC
Confidence 6678 8888 77999999999999999999 6787543 67889887765210 011 1123345
Q ss_pred cchhhccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCceeeeccCCCC-----CCHH
Q 015822 129 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGISFNSTLPLTH-----VDEK 201 (399)
Q Consensus 129 ~~~q~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~iali~DEpts~-----LD~~ 201 (399)
+.+|......+ +. .++...... ..+.|+.+++ .+++.+..||+|+.|+ +++||||+. +|+.
T Consensus 92 ~~~q~~~~~~~---l~-~~~~~~~~~----~~~~l~~~~l~~~~~~~~~~LS~g~~~~----lilDe~t~~~~~~~lD~~ 159 (525)
T 1tf7_A 92 WDLAKLVDEGK---LF-ILDASPDPE----GQEVVGGFDLSALIERINYAIQKYRARR----VSIDSVTSVFQQYDASSV 159 (525)
T ss_dssp CCHHHHHHTTS---EE-EEECCCCSS----CCSCCSSHHHHHHHHHHHHHHHHHTCSE----EEEECSTTTSTTTCCHHH
T ss_pred CChHHhhccCc---EE-EEecCcccc----hhhhhcccCHHHHHHHHHHHHHHcCCCE----EEECCHHHHHHhcCCHHH
Confidence 55554321100 00 011111000 0011112222 2455677899998876 567899874 5665
Q ss_pred ---HHHHHHHHhhh-CCcEEEEcCCCCH
Q 015822 202 ---LCYQILHEYKI-HNAEVLFREDATV 225 (399)
Q Consensus 202 ---~v~~ll~~l~~-~~~~v~vthd~~~ 225 (399)
.+.++++.++. ..++|+++|+...
T Consensus 160 ~~~~l~~ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 160 VRRELFRLVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 45556666653 3489999999765
No 282
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.79 E-value=5.1e-09 Score=97.48 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=37.2
Q ss_pred ccEEEEEecCCCCChhhHH--------------HH------------------Hc--C-CCEEEecchhccchHHHHHHH
Q 015822 239 MKCVYVYNKIDVIGIDDVD--------------KL------------------AR--Q-PNSVVISCNLKLNLDRLLARM 283 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~~~~--------------~l------------------~~--~-~~~i~vSa~~~~gl~~L~~~i 283 (399)
.|.++|+||+|+....+.+ .+ .+ . .+++++||+++.|+++|.+.+
T Consensus 172 ~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i 251 (262)
T 1yrb_A 172 ATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 251 (262)
T ss_dssp SCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHH
T ss_pred CCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHH
Confidence 6999999999987643211 10 11 1 258999999999999999999
Q ss_pred HHHhC
Q 015822 284 WEEMG 288 (399)
Q Consensus 284 ~~~l~ 288 (399)
.+.+.
T Consensus 252 ~~~~~ 256 (262)
T 1yrb_A 252 YEHYC 256 (262)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87663
No 283
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.79 E-value=1.7e-08 Score=101.09 Aligned_cols=65 Identities=20% Similarity=0.125 Sum_probs=40.3
Q ss_pred CcceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhCCCC---CCCc-cccceeeeeceEEEEC-C--EeecccCcccc
Q 015822 52 GEGFEVTKFGHGR--VALIGFPSVGKSTLLTLLTGTHS---EAAS-YEFTTLTCIPGIIHYN-D--TKIQLLDLPGI 119 (399)
Q Consensus 52 ~~~~~v~~~~g~~--valvG~~gaGKSTLln~L~g~~~---~vs~-~p~TT~~~~~G~i~~~-g--~~i~~iD~~Gl 119 (399)
+++|++.+ |.. ++|+|+||||||||+|+|+|... ++.. .|++|+... |.+.-. + ..+.++|++|+
T Consensus 32 ~vsl~i~~--Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i-~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 32 LVNKSVSQ--GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSN-TYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp HHHHSCC---CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEE-EEEEEC--CEEEEEEEEEECC
T ss_pred CCceEecC--CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeE-EEEeecCccccccchhhhhhh
Confidence 56777777 668 99999999999999999999852 2222 345555422 222222 2 14566676664
No 284
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.76 E-value=1.2e-08 Score=111.11 Aligned_cols=60 Identities=8% Similarity=-0.054 Sum_probs=42.5
Q ss_pred ccccchhhHhhcCce--------eeeccCCCCCCHHHHH----HHHHHhh--hCCcEEEEcCCCCHHHHHHHHh
Q 015822 174 PPQIYFKKKKTGGIS--------FNSTLPLTHVDEKLCY----QILHEYK--IHNAEVLFREDATVDDLIDVIE 233 (399)
Q Consensus 174 ~~~LS~g~kqr~~ia--------li~DEpts~LD~~~v~----~ll~~l~--~~~~~v~vthd~~~~~~~~~i~ 233 (399)
...+|++++++..++ +++|||++|+|+.... .+++.+. ...+++++||+..+.++++...
T Consensus 733 ~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~ 806 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 806 (918)
T ss_dssp -CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcc
Confidence 355666666666554 8999999999997433 4556553 2448999999998888776553
No 285
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.75 E-value=6.1e-10 Score=110.00 Aligned_cols=57 Identities=32% Similarity=0.442 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC------CCCCCccccceeeeeceEEEECCEeecccCccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT------HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~------~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~ 122 (399)
..++++|.||+|||||+|+|++. ...++++||||+++..+.+ +..+.++||||+...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINH 225 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcH
Confidence 47999999999999999999997 4668999999999876443 234788999999754
No 286
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.73 E-value=4.1e-09 Score=97.85 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=24.8
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+++|++.+ |..|||+|+||||||||+++|+|..
T Consensus 17 ~isl~i~~--g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 17 NLYFQSMR--PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ------CC--SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeccCCC--CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 67888877 7899999999999999999999853
No 287
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.73 E-value=1.3e-08 Score=111.06 Aligned_cols=44 Identities=7% Similarity=-0.164 Sum_probs=33.6
Q ss_pred eeeccCCCCCCHHHH----HHHHHHhhh--CCcEEEEcCCCCHHHHHHHH
Q 015822 189 FNSTLPLTHVDEKLC----YQILHEYKI--HNAEVLFREDATVDDLIDVI 232 (399)
Q Consensus 189 li~DEpts~LD~~~v----~~ll~~l~~--~~~~v~vthd~~~~~~~~~i 232 (399)
+++|||++|+|+... ..+++.+.. ..+++++||+..+..+++.+
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~ 794 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQI 794 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhccc
Confidence 899999999998743 455666653 44899999998887776654
No 288
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.69 E-value=3.2e-09 Score=104.13 Aligned_cols=100 Identities=20% Similarity=0.108 Sum_probs=57.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-C-CCccc---c----ceeeeeceEEEECCEeecccCccccccccccCcccchh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS-E-AASYE---F----TTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~-~-vs~~p---~----TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q 132 (399)
|.+++|+|+||||||||+|+|+|... + .+... + ||+...-+. +. ....++|+||+... +
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~--v~-q~~~l~dtpgv~e~-----~---- 282 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYH--FP-HGGDVIDSPGVREF-----G---- 282 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEE--CT-TSCEEEECHHHHTC-----C----
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEE--EC-CCCEecCcccHHHh-----h----
Confidence 67999999999999999999999875 4 12221 1 222211111 11 11123455554321 0
Q ss_pred hccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce
Q 015822 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS 188 (399)
Q Consensus 133 ~~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia 188 (399)
+...........+.++++.+++ ..+..+..+| |++++.+++
T Consensus 283 --------------l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala 325 (358)
T 2rcn_A 283 --------------LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVE 325 (358)
T ss_dssp --------------CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHH
T ss_pred --------------hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHH
Confidence 0001111222334556677777 5788889999 999999887
No 289
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.68 E-value=9.9e-09 Score=106.80 Aligned_cols=59 Identities=29% Similarity=0.336 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEE-------CCEeecccCccccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-------NDTKIQLLDLPGIIEG 122 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~-------~g~~i~~iD~~Gl~~~ 122 (399)
.+|+|+|+||+|||||+|+|+|....+ ++++||++.+.|.+.| .+..+.++||||+...
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 489999999999999999999987544 8899999999999765 5678999999998753
No 290
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.67 E-value=4.5e-09 Score=96.83 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 015822 57 VTKFGHGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 57 v~~~~g~~valvG~~gaGKSTLln~L~g 84 (399)
+.+ |+.++|+||||||||||+++|++
T Consensus 27 i~~--G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPE--GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EET--TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCC--CcEEEEEeCCCCCHHHHHHHHHH
Confidence 555 78999999999999999999993
No 291
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.67 E-value=1.4e-09 Score=103.63 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=29.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~ 88 (399)
++++.+.+ |+.++|+|+||||||||++.|+|...+
T Consensus 27 ~i~~~l~~--G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 27 DKTLGARG--GEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp HHHCSBCT--TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHhcCCCC--CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 44555666 789999999999999999999997644
No 292
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.65 E-value=8.6e-09 Score=106.40 Aligned_cols=119 Identities=11% Similarity=0.090 Sum_probs=75.3
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceE--EEECCEeecccCccccccccccCcccchhh
Q 015822 56 EVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGI--IHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (399)
Q Consensus 56 ~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~--i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~ 133 (399)
.+.+ |..++|+|+||+|||||++.++|...+ . |. +.+.+ -+.+ .+.
T Consensus 277 ~i~~--G~i~~i~G~~GsGKSTLl~~l~g~~~~-----------~-G~~vi~~~~-----ee~~-------------~~l 324 (525)
T 1tf7_A 277 GFFK--DSIILATGATGTGKTLLVSRFVENACA-----------N-KERAILFAY-----EESR-------------AQL 324 (525)
T ss_dssp SEES--SCEEEEEECTTSSHHHHHHHHHHHHHT-----------T-TCCEEEEES-----SSCH-------------HHH
T ss_pred CCCC--CcEEEEEeCCCCCHHHHHHHHHHHHHh-----------C-CCCEEEEEE-----eCCH-------------HHH
Confidence 4555 779999999999999999999987543 1 21 22211 0110 010
Q ss_pred ccccCChhhhHHHHhcCCcHHHHHHHHHHHHHcCC--cccccccccchhhHhhcCce---------eeeccCCCCCCHH-
Q 015822 134 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK- 201 (399)
Q Consensus 134 ~~~~~~~d~il~v~d~~~~~~~~~~i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia---------li~DEpts~LD~~- 201 (399)
. ..+ . ..+.. +.+ +..+|+ ..+.++..||+|++|+..++ +++| ||++||..
T Consensus 325 ~---~~~------~-~~g~~-----~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~ 387 (525)
T 1tf7_A 325 L---RNA------Y-SWGMD-----FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGV 387 (525)
T ss_dssp H---HHH------H-TTSCC-----HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSS
T ss_pred H---HHH------H-HcCCC-----HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhC
Confidence 0 000 0 00000 111 334555 56778899999999999887 8899 99999976
Q ss_pred ----H---HHHHHHHhhhCC-cEEEEcCCC
Q 015822 202 ----L---CYQILHEYKIHN-AEVLFREDA 223 (399)
Q Consensus 202 ----~---v~~ll~~l~~~~-~~v~vthd~ 223 (399)
. +.++++.++..+ ++++++|+.
T Consensus 388 ~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 388 SNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 3 444555555444 899999997
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.64 E-value=1.8e-09 Score=103.75 Aligned_cols=33 Identities=30% Similarity=0.201 Sum_probs=28.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+++|.+.+ |++++|+||||||||||+++|+|..
T Consensus 118 ~vsl~i~~--Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPK--KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTT--CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecC--CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44566666 7799999999999999999999973
No 294
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.64 E-value=4.2e-09 Score=94.30 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
|++++|+|+||||||||+++|+|..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4689999999999999999999975
No 295
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.61 E-value=1.2e-08 Score=110.96 Aligned_cols=82 Identities=24% Similarity=0.255 Sum_probs=58.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-CCC---------------ccccceeeeeceEEEEC----------------CEee
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHS-EAA---------------SYEFTTLTCIPGIIHYN----------------DTKI 111 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~-~vs---------------~~p~TT~~~~~G~i~~~----------------g~~i 111 (399)
.|+|+|.+|+|||||++.|++... ..+ ...+.|+......+.+. +..+
T Consensus 21 nI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i 100 (842)
T 1n0u_A 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 100 (842)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceE
Confidence 799999999999999999986421 111 13455666666667775 6789
Q ss_pred cccCccccccccccCcccchhhccccCChhhhHHHHhcCCc
Q 015822 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (399)
Q Consensus 112 ~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~ 152 (399)
.++||||.... .......++.+|.+++|+|+...
T Consensus 101 ~liDTPG~~df-------~~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 101 NLIDSPGHVDF-------SSEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp EEECCCCCCSS-------CHHHHHHHHTCSEEEEEEETTTB
T ss_pred EEEECcCchhh-------HHHHHHHHHhCCEEEEEEeCCCC
Confidence 99999997542 12334456788999999988764
No 296
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.61 E-value=7e-08 Score=100.02 Aligned_cols=98 Identities=26% Similarity=0.325 Sum_probs=65.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh---CCC-------------CCCCcc------ccceeeeeceEEEECCEeecccCcccccc
Q 015822 64 RVALIGFPSVGKSTLLTLLT---GTH-------------SEAASY------EFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~---g~~-------------~~vs~~------p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~ 121 (399)
.|||+|..++|||||.-+|+ |.. ..+.|+ -|.|+....-.+.|+|..|.++||||...
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 79999999999999999884 221 012222 35677777778899999999999999764
Q ss_pred ccccCcccchhhccccCChhhhHHHHhcCCcH-HHHHHHHHHHHHcCC
Q 015822 122 GASEGKGRGRQVIAVSKSSDIVLMVLDASKSE-GHRQILTKELEAVGL 168 (399)
Q Consensus 122 ~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~-~~~~~i~~~L~~~gi 168 (399)
. ..+....++-+|..++|+|+.... .+.+.+...+...++
T Consensus 113 F-------~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~l 153 (548)
T 3vqt_A 113 F-------SEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRAT 153 (548)
T ss_dssp C-------SHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTC
T ss_pred H-------HHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCC
Confidence 3 234555677889989999987643 334445555555554
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.55 E-value=8.5e-08 Score=94.71 Aligned_cols=118 Identities=17% Similarity=0.035 Sum_probs=69.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeee-ceEEEECCEeecccCccccccccccCcccchhhccccCCh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~-~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~ 140 (399)
|..++|+||||||||||+++|+|...+ . .|.|.+.+.++.+. .....++..|.... .
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~-----------~~~g~I~~~e~~~e~~--------~~~~~~~v~Q~~~g---~ 193 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIEDPIEYV--------FKHKKSIVNQREVG---E 193 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH-----------HSCCEEEEEESSCCSC--------CCCSSSEEEEEEBT---T
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc-----------CCCcEEEEecccHhhh--------hccCceEEEeeecC---C
Confidence 679999999999999999999997543 4 68876544343320 11122333331000 0
Q ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHcCCcccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhhhCCcEEEEc
Q 015822 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (399)
Q Consensus 141 d~il~v~d~~~~~~~~~~i~~~L~~~gi~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~~~~~~v~vt 220 (399)
+. ..- ...+...|. ..| =.+++|||+ |.+.+..+++......+++.++
T Consensus 194 ~~-------~~~---~~~l~~~L~-------~~p------------d~illdE~~---d~e~~~~~l~~~~~g~~vi~t~ 241 (372)
T 2ewv_A 194 DT-------KSF---ADALRAALR-------EDP------------DVIFVGEMR---DLETVETALRAAETGHLVFGTL 241 (372)
T ss_dssp TB-------SCS---HHHHHHHTT-------SCC------------SEEEESCCC---SHHHHHHHHHHHTTTCEEEECC
T ss_pred CH-------HHH---HHHHHHHhh-------hCc------------CEEEECCCC---CHHHHHHHHHHHhcCCEEEEEE
Confidence 00 000 001111110 000 127889999 7887777777765555788888
Q ss_pred CCCCHHHHHHHHh
Q 015822 221 EDATVDDLIDVIE 233 (399)
Q Consensus 221 hd~~~~~~~~~i~ 233 (399)
|+.+..+.++.+.
T Consensus 242 H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 242 HTNTAIDTIHRIV 254 (372)
T ss_dssp CCCSHHHHHHHHH
T ss_pred CcchHHHHHHHHH
Confidence 9988777777653
No 298
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.54 E-value=2.6e-07 Score=90.74 Aligned_cols=51 Identities=12% Similarity=-0.113 Sum_probs=41.4
Q ss_pred cccc-ccchhhHhhcCce------------------eeeccCCCCCCHHHHHHHHHHhh-hCCcEEEEcCC
Q 015822 172 KRPP-QIYFKKKKTGGIS------------------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFRED 222 (399)
Q Consensus 172 ~~~~-~LS~g~kqr~~ia------------------li~DEpts~LD~~~v~~ll~~l~-~~~~~v~vthd 222 (399)
+++. .+|+||+|++.+| +++||||++||+.....+++.+. ...+++++||.
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~ 330 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL 330 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec
Confidence 3455 7999999999887 88999999999997777777765 23578888994
No 299
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.54 E-value=1.7e-07 Score=71.26 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=49.5
Q ss_pred CcEEeecCCCCCCHHHHHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCeEEEEecccc
Q 015822 305 EPVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKKKEK 370 (399)
Q Consensus 305 ~~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dvv~i~~~~~~ 370 (399)
+.+.++. |+|+.|+|++||+++.+.+.+|.+ .|++|+.+|+|++||+|+|++.+.-
T Consensus 16 ~~~~lp~---GaT~~D~A~~Ih~~lg~~~v~AkV-------NG~~v~L~~~L~~gd~VeIit~~~~ 71 (78)
T 3hvz_A 16 DVISLPI---GSTVIDFAYAIHSAVGNRMIGAKV-------DGRIVPIDYKVKTGEIIDVLTTKEL 71 (78)
T ss_dssp CEEEEET---TCBHHHHHHHHCHHHHHTEEEEEE-------TTEEECTTCBCCTTCBEEEEECC--
T ss_pred CEEEecC---CCCHHHHHHHhhhhhhcceEEEEE-------CCEEcCCCcccCCCCEEEEEccCcc
Confidence 4778899 999999999999999999999887 5678899999999999999988543
No 300
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.54 E-value=1.2e-08 Score=100.70 Aligned_cols=56 Identities=30% Similarity=0.413 Sum_probs=42.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC-------CCCCCccccceeeeeceEEEECCEeecccCcccccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT-------HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~-------~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~ 121 (399)
..++++|.||+|||||+|+|+|. ...++++||||+++....+ + ..+.++||||+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~ 223 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL--D-EESSLYDTPGIIN 223 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES--S-SSCEEEECCCBCC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe--c-CCeEEEeCCCcCc
Confidence 47999999999999999999986 2347899999998876543 2 2378899999864
No 301
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.53 E-value=1.1e-08 Score=110.40 Aligned_cols=147 Identities=13% Similarity=0.061 Sum_probs=87.0
Q ss_pred CCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccccccCcccchhhcc----------ccCC-
Q 015822 71 PSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA----------VSKS- 139 (399)
Q Consensus 71 ~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~----------~~~~- 139 (399)
+..||++|.+.+.....+ .--|+-+.+..|.+.++|.+|.-+..-.+. +..++..+... .+..
T Consensus 271 ~~~~~~~~~~~~~~~~Cp--~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~----e~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECP--LCHGKRLRQEALNVTFAGLDITELSRLPLA----RVSELLRPYAEEREPGHAERVKNRPE 344 (842)
T ss_dssp CHHHHHHHGGGCEEEECS--SSSSSCBCTTTTTCBBTTBCHHHHHHSBHH----HHHHHHHHHHTTCSSCSTTSSSSCSS
T ss_pred CHHHHHHHHhhccccCCC--CCCCCccCHHHhhcccCCccHHHHhhcCHH----HHHHHHHhhhhhhhhcccchhhcchh
Confidence 345788888777664443 344666777888899988776421100000 00011111100 0000
Q ss_pred hhhhHHHHhcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce-----------eeeccCCCCCCHHHHHH
Q 015822 140 SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQ 205 (399)
Q Consensus 140 ~d~il~v~d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia-----------li~DEpts~LD~~~v~~ 205 (399)
...+..-+ ..+...++. .|..+|+ .+++++..|||||+||+.|| +++||||++||+..+..
T Consensus 345 ~~~i~~~i----~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~ 419 (842)
T 2vf7_A 345 QAIALQRM----AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA 419 (842)
T ss_dssp HHHHHHHH----HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred hHHHHHHH----HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence 00000000 112233444 6778888 36899999999999999977 88999999998875555
Q ss_pred H---HHHhh-hCCcEEEEcCCCCHHHH
Q 015822 206 I---LHEYK-IHNAEVLFREDATVDDL 228 (399)
Q Consensus 206 l---l~~l~-~~~~~v~vthd~~~~~~ 228 (399)
+ ++.+. ..+++|+|+||......
T Consensus 420 L~~~l~~L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 420 LLSALENLKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp HHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 4 44555 35699999999865443
No 302
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.52 E-value=7.8e-08 Score=82.58 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=50.4
Q ss_pred ccccccccchhhHhhcCce---------------eeeccCCCCCCHHHHHHHHHHhh---h-CCcEEEEcCCCCHHHHHH
Q 015822 170 LNKRPPQIYFKKKKTGGIS---------------FNSTLPLTHVDEKLCYQILHEYK---I-HNAEVLFREDATVDDLID 230 (399)
Q Consensus 170 ~~~~~~~LS~g~kqr~~ia---------------li~DEpts~LD~~~v~~ll~~l~---~-~~~~v~vthd~~~~~~~~ 230 (399)
.++++..||+||+||+++| +++||||++||......+.+.+. . ..+++++|||....+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~--- 127 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD--- 127 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG---
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHH---
Confidence 4677899999999999651 88999999999986555554443 2 348999999974333
Q ss_pred HHhhccccccEEEEEecC
Q 015822 231 VIEGNRKYMKCVYVYNKI 248 (399)
Q Consensus 231 ~i~~~~~~~p~iiv~NK~ 248 (399)
..+.+++++|.
T Consensus 128 -------~~d~ii~l~~~ 138 (148)
T 1f2t_B 128 -------AADHVIRISLE 138 (148)
T ss_dssp -------GCSEEEEEEEE
T ss_pred -------hCCEEEEEEcC
Confidence 23566777653
No 303
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.52 E-value=5.9e-08 Score=104.61 Aligned_cols=44 Identities=2% Similarity=-0.120 Sum_probs=32.6
Q ss_pred eeeccCCCCCCHH---H-HHHHHHHhhh--CCcEEEEcCCCCHHHHHHHH
Q 015822 189 FNSTLPLTHVDEK---L-CYQILHEYKI--HNAEVLFREDATVDDLIDVI 232 (399)
Q Consensus 189 li~DEpts~LD~~---~-v~~ll~~l~~--~~~~v~vthd~~~~~~~~~i 232 (399)
+++|||++|+|.. . +..+++.+.. ..+++++||+..+..+++.+
T Consensus 690 lLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~ 739 (800)
T 1wb9_A 690 VLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 (800)
T ss_dssp EEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHS
T ss_pred EEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhh
Confidence 8999997777753 3 3567777764 34899999998877777654
No 304
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.52 E-value=2.8e-08 Score=93.86 Aligned_cols=66 Identities=5% Similarity=-0.117 Sum_probs=43.5
Q ss_pred HHHHHHHcCC--cccccccccchhhHhhcCce------eeeccCCC--CCCHH------HHHHHHHHhh-h-CCcEEEEc
Q 015822 159 LTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------FNSTLPLT--HVDEK------LCYQILHEYK-I-HNAEVLFR 220 (399)
Q Consensus 159 i~~~L~~~gi--~~~~~~~~LS~g~kqr~~ia------li~DEpts--~LD~~------~v~~ll~~l~-~-~~~~v~vt 220 (399)
....++.+++ ..++++..||+|+.+++.-. +++|||++ ++|.. .+...|..+. . ..++|+++
T Consensus 99 ~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~ 178 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLH 178 (279)
T ss_dssp HHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred hhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4455667666 45677889999998876321 89999999 88862 3334444442 2 34888888
Q ss_pred CCCC
Q 015822 221 EDAT 224 (399)
Q Consensus 221 hd~~ 224 (399)
|+..
T Consensus 179 H~~~ 182 (279)
T 1nlf_A 179 HASK 182 (279)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 305
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.51 E-value=2.6e-08 Score=95.66 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=61.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC-CCcccc-------ceeeeeceEEEECCEeecccCccccccccc-cCcccchh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEF-------TTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-EGKGRGRQ 132 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~-vs~~p~-------TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~-~~~~~~~q 132 (399)
|..++|+|+||||||||+|+|+ ...+ .+...+ ||..+. .+...+. -.++|+||+..... .... ..+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~~~-g~v~d~pg~~~~~l~~~lt-~e~ 239 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFGKG-SFVGDTPGFSKVEATMFVK-PRE 239 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEETTT-EEEESSCCCSSCCGGGTSC-GGG
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEcCCC-cEEEECcCcCcCcccccCC-HHH
Confidence 6799999999999999999999 7644 344443 333221 1222111 12457777642110 0000 011
Q ss_pred hccccCChhhhHHH--H-hcCCcHHHHHHHHHHHHHcCC---cccccccccchhhHhhcCce
Q 015822 133 VIAVSKSSDIVLMV--L-DASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS 188 (399)
Q Consensus 133 ~~~~~~~~d~il~v--~-d~~~~~~~~~~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia 188 (399)
....+. +...+. . +.....+....+.+.|+.+++ +.++++..||+.+++++.+|
T Consensus 240 l~~~f~--~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~ 299 (302)
T 2yv5_A 240 VRNYFR--EFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC 299 (302)
T ss_dssp GGGGCG--GGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred HHHHHH--HHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 100111 110010 1 111112223467888999998 46777888897655555543
No 306
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.51 E-value=2.9e-08 Score=104.75 Aligned_cols=98 Identities=20% Similarity=0.320 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHH---hCCCCC---------CCccc------cceeeeeceEEEECCEeecccCcccccccccc
Q 015822 64 RVALIGFPSVGKSTLLTLL---TGTHSE---------AASYE------FTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE 125 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L---~g~~~~---------vs~~p------~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~ 125 (399)
.|||+|..++|||||.-+| +|.... +.|+- |.|+....-.+.|+|..|.++||||-...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--- 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--- 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH---
Confidence 5899999999999999888 455432 12221 56777777778899999999999996542
Q ss_pred CcccchhhccccCChhhhHHHHhcCCcHH-HHHHHHHHHHHcCC
Q 015822 126 GKGRGRQVIAVSKSSDIVLMVLDASKSEG-HRQILTKELEAVGL 168 (399)
Q Consensus 126 ~~~~~~q~~~~~~~~d~il~v~d~~~~~~-~~~~i~~~L~~~gi 168 (399)
..+....++-+|..++|+|+..... +.+.+...+...++
T Consensus 81 ----~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~l 120 (638)
T 3j25_A 81 ----LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 120 (638)
T ss_dssp ----HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCC
Confidence 2355566788999999999875432 33344444444444
No 307
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.48 E-value=5.3e-08 Score=91.56 Aligned_cols=55 Identities=29% Similarity=0.506 Sum_probs=38.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-CCCccccceeeeeceEEEECCEeecccCcccccc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~-~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~ 121 (399)
+++++|.||+|||||+|+|+|... .+++.||||+... .+.+ +..+.++||||+..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECC
T ss_pred heEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCccc
Confidence 899999999999999999999884 6899999998764 2333 45788999999875
No 308
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.48 E-value=1.7e-08 Score=108.14 Aligned_cols=40 Identities=5% Similarity=-0.076 Sum_probs=29.6
Q ss_pred eeeccC---CCCCCHHHH-HHHHHHhh-hCCcEEEEcCCCCHHHH
Q 015822 189 FNSTLP---LTHVDEKLC-YQILHEYK-IHNAEVLFREDATVDDL 228 (399)
Q Consensus 189 li~DEp---ts~LD~~~v-~~ll~~l~-~~~~~v~vthd~~~~~~ 228 (399)
+++||| |+++|.... ..+++.+. ...+++++||+..+..+
T Consensus 659 lLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 659 VLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 703 (765)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 899999 999998754 45666665 34589999999765443
No 309
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.48 E-value=1.3e-07 Score=92.86 Aligned_cols=42 Identities=10% Similarity=-0.120 Sum_probs=31.6
Q ss_pred eeeccCCCCCCHHHHHHHHHHhhhCCcEEEEcCCCCHHHHHHHHh
Q 015822 189 FNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIE 233 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l~~~~~~v~vthd~~~~~~~~~i~ 233 (399)
+++|||+ |.+.+..+++......++++++|+.+..+.++.+.
T Consensus 200 illDEp~---d~e~~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 200 ILVGEMR---DLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp EEESCCC---SHHHHHHHHHHHHTTCEEEEEESCSSHHHHHHHHH
T ss_pred EecCCCC---CHHHHHHHHHHHhcCCEEEEEEccChHHHHHHHHh
Confidence 7899999 67666655655445568999999999877777653
No 310
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.46 E-value=2.4e-08 Score=89.97 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..+||+|+||||||||+++|+|..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999999974
No 311
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.45 E-value=6.6e-08 Score=87.76 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=35.8
Q ss_pred ccEEEEEecCCCCChh--hHH---H-HHc---CCCEEEecchhccchHHHHHHHHHHh
Q 015822 239 MKCVYVYNKIDVIGID--DVD---K-LAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~--~~~---~-l~~---~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.|.++|+||+|+.... ..+ . +.+ ..+++++||+++.|+++|.+.+.+.+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 6889999999986431 122 1 221 23588999999999999999887755
No 312
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.45 E-value=1.3e-08 Score=88.55 Aligned_cols=45 Identities=20% Similarity=0.068 Sum_probs=36.0
Q ss_pred cceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee
Q 015822 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 53 ~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 111 (399)
++|++.+ |+.++|+||||||||||+++|+|.. + ..|.+.++|.++
T Consensus 26 vsl~i~~--Ge~v~L~G~nGaGKTTLlr~l~g~l-~-----------~~G~V~~~g~~i 70 (158)
T 1htw_A 26 LKLHTEK--AIMVYLNGDLGAGKTTLTRGMLQGI-G-----------HQGNVKSPTYTL 70 (158)
T ss_dssp HHHCCSS--CEEEEEECSTTSSHHHHHHHHHHHT-T-----------CCSCCCCCTTTC
T ss_pred cccccCC--CCEEEEECCCCCCHHHHHHHHHHhC-C-----------CCCeEEECCEee
Confidence 4555555 7899999999999999999999987 5 567777766544
No 313
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.45 E-value=3.7e-08 Score=108.73 Aligned_cols=39 Identities=3% Similarity=-0.159 Sum_probs=30.3
Q ss_pred eeeccCCCCCCHHH----HHHHHHHhhh--CCcEEEEcCCCCHHH
Q 015822 189 FNSTLPLTHVDEKL----CYQILHEYKI--HNAEVLFREDATVDD 227 (399)
Q Consensus 189 li~DEpts~LD~~~----v~~ll~~l~~--~~~~v~vthd~~~~~ 227 (399)
+++|||++|+|... +..+++.+.. ..+++++||+..+..
T Consensus 872 lLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~ 916 (1022)
T 2o8b_B 872 VLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVE 916 (1022)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHH
T ss_pred EEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 89999999999764 4567777763 348999999976644
No 314
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.43 E-value=4.6e-08 Score=93.75 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~ 88 (399)
+..++|+|+||||||||+|+|+|...+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc
Confidence 679999999999999999999998865
No 315
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.41 E-value=5.9e-08 Score=88.07 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 57 v~~~~g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+.+ |+.++|+||||||||||+++|+|..
T Consensus 22 i~~--G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IET--QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EES--SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCC--CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 444 7899999999999999999999854
No 316
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.40 E-value=1.3e-07 Score=91.52 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=53.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC-CccccceeeeeceEEEECCEeecccCccccccccccCcccchhhccccCChhh
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHSEA-ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~~v-s~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~ 142 (399)
+|.|+|.+|||||||++.+.+...+- ....+.|+.+....+. ....++++||+|-.+.... .+ .....+++++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~--~l--~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP--SY--DSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC--SH--HHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch--hh--hhhhhccCCCE
Confidence 47899999999999999888654331 1123455555544431 2357899999985321100 00 11234688999
Q ss_pred hHHHHhcCCc
Q 015822 143 VLMVLDASKS 152 (399)
Q Consensus 143 il~v~d~~~~ 152 (399)
+++|+|....
T Consensus 76 ~IlV~Ditd~ 85 (331)
T 3r7w_B 76 LVYVIDSQDE 85 (331)
T ss_dssp EEEECCCSSC
T ss_pred EEEEEECCch
Confidence 9999988764
No 317
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.38 E-value=1e-08 Score=90.25 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL 116 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~ 116 (399)
..++|+|++|||||||+++|++...+. ....|.+.++|.++.-+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~--------g~~~G~I~~dg~~i~~~~~ 48 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER--------GLRVAVVKRHAHGDFEIDK 48 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT--------TCCEEEEEC----------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc--------CCceEEEEEcCcccccCCc
Confidence 379999999999999999999986440 0027999999988655553
No 318
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.38 E-value=6.2e-08 Score=87.16 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=48.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC--CCCccccceeeeeceEEEECCEeecccCccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~ 120 (399)
|..++|+||||||||||+++|++... .....+.||+.|..|. ++|.++.++|...+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMT 77 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhh
Confidence 67999999999999999999998764 3467789999999997 688888888776554
No 319
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.37 E-value=1.6e-07 Score=96.00 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 015822 62 HGRVALIGFPSVGKSTLLTLLT 83 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~ 83 (399)
...|+|+|+||||||||++.|+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999999
No 320
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.36 E-value=2.4e-08 Score=96.51 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeeccc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL 114 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~i 114 (399)
+.++|+|++|||||||+|.|+|.... +--.-+.+..|.+.++|.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~---~~~aVi~~d~G~i~idg~~l~~~ 53 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHG---YKIAVIENEFGEVSVDDQLIGDR 53 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCC---CCEEEECSSCCSCCEEEEEECTT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCC---CcEEEEEecCcccCccHHHHhCC
Confidence 47999999999999999999987510 00011234778888888877543
No 321
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.34 E-value=1.8e-07 Score=101.93 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=54.0
Q ss_pred HHHHHHHHcCC---cccccccccchhhHhhcCce-----------eeeccCCCCCCHHHHHHHHH---Hhh-hCCcEEEE
Q 015822 158 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILH---EYK-IHNAEVLF 219 (399)
Q Consensus 158 ~i~~~L~~~gi---~~~~~~~~LS~g~kqr~~ia-----------li~DEpts~LD~~~v~~ll~---~l~-~~~~~v~v 219 (399)
...+.|..+|+ .+++++.+|||||+||+.|| +++||||++||+.....+++ .+. ..+|+|+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34456777888 36899999999999999988 88999999999875555544 444 34599999
Q ss_pred cCCCCHH
Q 015822 220 REDATVD 226 (399)
Q Consensus 220 thd~~~~ 226 (399)
+||....
T Consensus 523 tHd~~~~ 529 (916)
T 3pih_A 523 EHDEEVI 529 (916)
T ss_dssp CCCHHHH
T ss_pred eCCHHHH
Confidence 9997543
No 322
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.34 E-value=1.9e-07 Score=101.48 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=53.4
Q ss_pred HHHHHcCC---cccccccccchhhHhhcCce-----------eeeccCCCCCCHHHHHH---HHHHhh-hCCcEEEEcCC
Q 015822 161 KELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQ---ILHEYK-IHNAEVLFRED 222 (399)
Q Consensus 161 ~~L~~~gi---~~~~~~~~LS~g~kqr~~ia-----------li~DEpts~LD~~~v~~---ll~~l~-~~~~~v~vthd 222 (399)
+.|..+|+ .+++.+..|||||+||+.|| +++||||++||+..... +|+.++ ..+|+|+|+||
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 34777888 36899999999999999988 88999999999875544 445555 45699999999
Q ss_pred CCHHH
Q 015822 223 ATVDD 227 (399)
Q Consensus 223 ~~~~~ 227 (399)
.....
T Consensus 566 l~~i~ 570 (972)
T 2r6f_A 566 EDTML 570 (972)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75443
No 323
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.32 E-value=2.6e-07 Score=100.64 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=53.0
Q ss_pred HHHHHcCC---cccccccccchhhHhhcCce-----------eeeccCCCCCCHHHHHHHH---HHhh-hCCcEEEEcCC
Q 015822 161 KELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQIL---HEYK-IHNAEVLFRED 222 (399)
Q Consensus 161 ~~L~~~gi---~~~~~~~~LS~g~kqr~~ia-----------li~DEpts~LD~~~v~~ll---~~l~-~~~~~v~vthd 222 (399)
+.|..+|+ .+++.+..|||||+||+.|| +++||||++||+..+..++ +.++ ..+|+|+|+||
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 34777888 36899999999999999888 8899999999998665555 4444 45699999999
Q ss_pred CCHH
Q 015822 223 ATVD 226 (399)
Q Consensus 223 ~~~~ 226 (399)
....
T Consensus 583 l~~i 586 (993)
T 2ygr_A 583 EDTI 586 (993)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 324
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.29 E-value=1.2e-07 Score=86.93 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=28.5
Q ss_pred CCCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHh-CCCCC-CCccccceeeeeceE
Q 015822 50 GAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLT-GTHSE-AASYEFTTLTCIPGI 103 (399)
Q Consensus 50 ~~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~-g~~~~-vs~~p~TT~~~~~G~ 103 (399)
.+++||++.+ |..++|+||||||||||+++|+ |...+ ......||+.|..|.
T Consensus 17 ~~~~sl~v~~--G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~ 70 (231)
T 3lnc_A 17 QGPGSMLKSV--GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGE 70 (231)
T ss_dssp -----CCEEC--CCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTC
T ss_pred cCCCCcccCC--CCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccc
Confidence 3477898888 7799999999999999999999 98643 222344455555443
No 325
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.22 E-value=2.9e-07 Score=90.11 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=26.4
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 55 ~~v~~~~g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+.+.+ |..++|+|+||||||||++.|++..
T Consensus 126 ggi~~--G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIET--QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEES--SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCC--CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45666 7899999999999999999999875
No 326
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.21 E-value=5.1e-08 Score=90.32 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLT---GTHSE 88 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~---g~~~~ 88 (399)
+.+++|+|+||||||||+++|+ |...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4699999999999999999999 98654
No 327
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.18 E-value=3.7e-07 Score=80.47 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC--CCccccceeeeeceEEEECCEeecccC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQLLD 115 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~--vs~~p~TT~~~~~G~i~~~g~~i~~iD 115 (399)
|..++|+||||||||||+++|++...+ ....+.||+.|..|. ++|..+.+++
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge--~~g~~~~~~~ 58 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE--ENGKNYYFVS 58 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C--CBTTTBEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc--cCCCeeEEeC
Confidence 579999999999999999999987642 245567888887764 3454444433
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.17 E-value=2.9e-07 Score=81.56 Aligned_cols=48 Identities=29% Similarity=0.264 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC--CCccccceeeeeceEEEECCEeec
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQ 112 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~--vs~~p~TT~~~~~G~i~~~g~~i~ 112 (399)
..++|+||||||||||+++|+|...+ -.....||+.|..|.+ +|..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~ 51 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYN 51 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeee
Confidence 47999999999999999999998753 1234577888887764 454433
No 329
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.14 E-value=2.8e-07 Score=82.70 Aligned_cols=52 Identities=33% Similarity=0.298 Sum_probs=37.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC--CCccccceeeeeceEEEECCEeecccC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQLLD 115 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~--vs~~p~TT~~~~~G~i~~~g~~i~~iD 115 (399)
|..++|+||||||||||+++|+|.... -.+...||+.|..|. ++|..+..++
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~ 57 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVT 57 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEcc
Confidence 568999999999999999999997532 123345777787776 3565544443
No 330
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.14 E-value=2.6e-07 Score=92.53 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeec
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ 112 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~ 112 (399)
+..++|+|||||||||||++|+|...+ ..|.|.+.+.++.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~-----------~~g~I~~~ed~ie 206 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNS-----------SERNILTVEDPIE 206 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCC-----------TTSCEEEEESSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCC-----------CCCEEEEecccch
Confidence 679999999999999999999997644 5677777666554
No 331
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.13 E-value=4.3e-07 Score=87.25 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC-CCccc-------cceeeeeceEEEECCEeecccCcccccc
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYE-------FTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~-vs~~p-------~TT~~~~~G~i~~~g~~i~~iD~~Gl~~ 121 (399)
|.+++|+|+||||||||+|+|+|...+ ++.++ .||.... .+...+ ..++|+||+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~~--g~v~dtpg~~~ 236 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTSG--GLVADTPGFSS 236 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEETT--EEEESSCSCSS
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcCC--EEEecCCCccc
Confidence 679999999999999999999998754 44444 2444321 222221 23568888753
No 332
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.13 E-value=7.4e-08 Score=94.72 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=28.3
Q ss_pred cceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015822 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (399)
Q Consensus 53 ~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~ 88 (399)
+++.|.+.=+.+++|+|+||||||||+++|+|...+
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444444422569999999999999999999998755
No 333
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.09 E-value=9.9e-07 Score=80.61 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~ 87 (399)
|..++|+||||||||||+++|+|...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 67999999999999999999999865
No 334
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.07 E-value=3.8e-08 Score=99.07 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..|+|+|+|||||||+.+.|++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999974
No 335
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.06 E-value=3.3e-07 Score=93.15 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=36.4
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 111 (399)
+++|++.+ +.++|+|||||||||||++|+|...+ ..|.+.++|.++
T Consensus 22 ~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~ 67 (483)
T 3euj_A 22 ARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIP-----------DLTLLNFRNTTE 67 (483)
T ss_dssp EEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCC-----------CTTTCCCCCTTS
T ss_pred ceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEEc
Confidence 56666666 59999999999999999999998655 566666666544
No 336
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.04 E-value=1.2e-06 Score=79.34 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~ 87 (399)
|..++|+|+||||||||++.|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999997643
No 337
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.04 E-value=2.1e-06 Score=86.41 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC---------------CCCCCccccceeeeeceEEEEC-----------CEeecccCc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT---------------HSEAASYEFTTLTCIPGIIHYN-----------DTKIQLLDL 116 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~---------------~~~vs~~p~TT~~~~~G~i~~~-----------g~~i~~iD~ 116 (399)
..|+|+|++++|||||||.|.|. ....-....||...+.|...+. +..+.++||
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 37999999999999999999874 1112223348888899998874 256889999
Q ss_pred ccccc
Q 015822 117 PGIIE 121 (399)
Q Consensus 117 ~Gl~~ 121 (399)
+|+..
T Consensus 148 eG~~~ 152 (447)
T 3q5d_A 148 QGTFD 152 (447)
T ss_dssp ECCCS
T ss_pred Ccccc
Confidence 99864
No 338
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.03 E-value=1.4e-06 Score=76.60 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=41.9
Q ss_pred cccccccchhhHhhcCce-------------eeeccCCCCCCHHHHHHHHHHh---hhCCcEEEEcCCCC
Q 015822 171 NKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT 224 (399)
Q Consensus 171 ~~~~~~LS~g~kqr~~ia-------------li~DEpts~LD~~~v~~ll~~l---~~~~~~v~vthd~~ 224 (399)
.+++..|||||+|++++| +++||||++||......+.+.+ ....+++++||+..
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~ 128 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDV 128 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHH
Confidence 345678999999999887 7889999999998665555544 33457899999853
No 339
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.00 E-value=2.1e-05 Score=75.37 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015822 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (399)
Q Consensus 61 ~g~~valvG~~gaGKSTLln~L~g~~~~ 88 (399)
.+..++|+|+|||||||++..|++...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 3679999999999999999999987643
No 340
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.99 E-value=9.3e-07 Score=86.84 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=37.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCE
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT 109 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~ 109 (399)
+++|.+.+ |..++|+|+||||||||+|+|+|...+ ..|.+.++|.
T Consensus 167 ~l~~~i~~--G~~i~ivG~sGsGKSTll~~l~~~~~~-----------~~g~I~ie~~ 211 (361)
T 2gza_A 167 FLRRAVQL--ERVIVVAGETGSGKTTLMKALMQEIPF-----------DQRLITIEDV 211 (361)
T ss_dssp HHHHHHHT--TCCEEEEESSSSCHHHHHHHHHTTSCT-----------TSCEEEEESS
T ss_pred HHHHHHhc--CCEEEEECCCCCCHHHHHHHHHhcCCC-----------CceEEEECCc
Confidence 34455555 679999999999999999999998755 7899998763
No 341
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.97 E-value=5.8e-06 Score=72.79 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 111 (399)
|..++|+|+||||||||+++|++. + ..|.+.++|.++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~--~-----------~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL--P-----------GVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC--S-----------SSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc--c-----------CCCeEEEcccch
Confidence 679999999999999999999997 2 467777776543
No 342
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.96 E-value=3e-06 Score=82.14 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee
Q 015822 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 61 ~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 111 (399)
.|..++|+|+||||||||++.|+|...+ ..|.+.+.|.++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~-----------~~g~V~l~g~D~ 167 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN-----------HGFSVVIAASDT 167 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEeecc
Confidence 4789999999999999999999998654 778888877665
No 343
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.96 E-value=3.4e-06 Score=85.67 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=37.5
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~ 110 (399)
+++|.+.. |.+++|+|+||||||||+++|+|...+ ..|.+.+.|.+
T Consensus 285 ~Isl~i~~--GeVI~LVGpNGSGKTTLl~~LAgll~~-----------~~G~V~l~g~D 330 (503)
T 2yhs_A 285 PLNVEGKA--PFVILMVGVNGVGKTTTIGKLARQFEQ-----------QGKSVMLAAGD 330 (503)
T ss_dssp CCCCCSCT--TEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEECCC
T ss_pred CceeeccC--CeEEEEECCCcccHHHHHHHHHHHhhh-----------cCCeEEEecCc
Confidence 56666655 789999999999999999999998644 67888886543
No 344
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.94 E-value=2.9e-06 Score=75.57 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
|..++|+||||||||||+++|+|..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 6799999999999999999999974
No 345
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.89 E-value=1.4e-05 Score=71.62 Aligned_cols=23 Identities=22% Similarity=0.013 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
|..++|+|+||+|||||++.|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999999998
No 346
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.88 E-value=1e-05 Score=86.37 Aligned_cols=98 Identities=14% Similarity=0.247 Sum_probs=59.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh---CCCC---C------CCcc------ccceeeeeceEEEEC-------CEeecccCccc
Q 015822 64 RVALIGFPSVGKSTLLTLLT---GTHS---E------AASY------EFTTLTCIPGIIHYN-------DTKIQLLDLPG 118 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~---g~~~---~------vs~~------p~TT~~~~~G~i~~~-------g~~i~~iD~~G 118 (399)
.|||+|...+|||||.-+|. |... . +.|+ =|.|+....-.+.|. +..|.++||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 79999999999999998885 2211 1 1111 144555555566664 47899999999
Q ss_pred cccccccCcccchhhccccCChhhhHHHHhcCCcH-HHHHHHHHHHHHcCC
Q 015822 119 IIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSE-GHRQILTKELEAVGL 168 (399)
Q Consensus 119 l~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~~~-~~~~~i~~~L~~~gi 168 (399)
-... ..+....++-+|..++|+|+.... .+.+.+...+...++
T Consensus 95 HvDF-------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~l 138 (709)
T 4fn5_A 95 HVDF-------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGV 138 (709)
T ss_dssp CTTC-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTC
T ss_pred Cccc-------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCC
Confidence 7542 235555667788888888886543 233444444444454
No 347
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.87 E-value=2.1e-05 Score=74.94 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=27.6
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~ 88 (399)
+++|. .+..++|+|+||+||||++..|++...+
T Consensus 92 ~i~~~----~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 92 LPVLK----DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp CCCCC----SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred eeecC----CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45665 3689999999999999999999998643
No 348
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.87 E-value=1.3e-06 Score=84.79 Aligned_cols=133 Identities=13% Similarity=0.185 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEeecccCccccccc-cccCcccchhhccccCC-h
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG-ASEGKGRGRQVIAVSKS-S 140 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i~~iD~~Gl~~~-~~~~~~~~~q~~~~~~~-~ 140 (399)
..++|+||||+|||||+++|++.... ...+.+|.+..++.++ ..+... ....+.+..+....... .
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~-------~~~~~sg~~~~~~~~l-----~~~~~~~~~~~v~~iDE~~~l~~~~~ 119 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTSGPVLVKQGDM-----AAILTSLERGDVLFIDEIHRLNKAVE 119 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEETTTCCSHHHH-----HHHHHHCCTTCEEEEETGGGCCHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEechHhcCHHHH-----HHHHHHccCCCEEEEcchhhcCHHHH
Confidence 47999999999999999999986411 1112333322222111 111000 01112222222211111 1
Q ss_pred hhhHHHHhcCC------cHHHHHHHHHHHHHcCC-cccccccccchhhHhhcCceeeeccCCCCCCHHHHHHHHHHhh
Q 015822 141 DIVLMVLDASK------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 211 (399)
Q Consensus 141 d~il~v~d~~~------~~~~~~~i~~~L~~~gi-~~~~~~~~LS~g~kqr~~iali~DEpts~LD~~~v~~ll~~l~ 211 (399)
+.+...+.... .......+...+..+++ ....++..||+++++|+++++-+|-+ +.+.+.++++...
T Consensus 120 e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~----~~~~l~~iL~~~~ 193 (334)
T 1in4_A 120 ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFY----TVKELKEIIKRAA 193 (334)
T ss_dssp HHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCC----CHHHHHHHHHHHH
Confidence 22222221111 01111233344445555 45677889999999999888666644 3566777776654
No 349
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.84 E-value=3.1e-06 Score=76.13 Aligned_cols=41 Identities=29% Similarity=0.315 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~ 110 (399)
|..|+|+|+||||||||+++|+|...+.+ +..|.+.++|..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--------~~~g~v~~d~~~ 62 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQG--------LPAEVVPMDGFH 62 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTT--------CCEEEEESGGGB
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC--------CceEEEecCCCc
Confidence 67999999999999999999999864210 246777766543
No 350
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.81 E-value=2.1e-05 Score=79.02 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
...|+++|+|||||||++..|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 351
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.80 E-value=4.3e-06 Score=80.14 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=34.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee
Q 015822 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 61 ~g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 111 (399)
.+..++|+||||||||||+++|+|...+ ..|.+.+.|.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-----------~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-----------LGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-----------TTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-----------cCCEEEEEeecC
Confidence 3689999999999999999999998755 788898887664
No 352
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.80 E-value=8.4e-06 Score=73.41 Aligned_cols=52 Identities=19% Similarity=0.080 Sum_probs=38.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC--CCccccceeeeeceEEEECCEeecccC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQLLD 115 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~--vs~~p~TT~~~~~G~i~~~g~~i~~iD 115 (399)
|..++|+||||||||||++.|++...+ ....+.||+.|..|. .+|..+.+++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e--~~g~~y~~~~ 61 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE--QDGVDYYFRS 61 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC--CBTTTBEECC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc--cCCceeEEec
Confidence 679999999999999999999988743 445567888877764 2344444444
No 353
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.77 E-value=1.5e-05 Score=75.84 Aligned_cols=26 Identities=15% Similarity=-0.046 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~ 87 (399)
+..|+|+|++|||||||.+.|.+...
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46999999999999999999998753
No 354
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=3.6e-05 Score=74.45 Aligned_cols=35 Identities=0% Similarity=-0.071 Sum_probs=26.6
Q ss_pred eeeccCCCCCCHHHHHHHHHHhhh---CCcEEEEcCCCC
Q 015822 189 FNSTLPLTHVDEKLCYQILHEYKI---HNAEVLFREDAT 224 (399)
Q Consensus 189 li~DEpts~LD~~~v~~ll~~l~~---~~~~v~vthd~~ 224 (399)
+++|||++ ||......+++.+.. ...+++++|+..
T Consensus 138 lilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 138 VIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp EEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred EEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 88999999 999876666666652 236888999864
No 355
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.73 E-value=1.6e-05 Score=81.61 Aligned_cols=66 Identities=6% Similarity=-0.101 Sum_probs=48.5
Q ss_pred ccccc-chhhHhhcCce-----------eeeccCCCCCCHHHHH---HHHHHhhhCCcEEEEcCCCCHHHHHHHHhhccc
Q 015822 173 RPPQI-YFKKKKTGGIS-----------FNSTLPLTHVDEKLCY---QILHEYKIHNAEVLFREDATVDDLIDVIEGNRK 237 (399)
Q Consensus 173 ~~~~L-S~g~kqr~~ia-----------li~DEpts~LD~~~v~---~ll~~l~~~~~~v~vthd~~~~~~~~~i~~~~~ 237 (399)
++..| ||||+||++|| +++||||++||..... +++..+....++|++||++.+...
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~--------- 463 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--------- 463 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH---------
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh---------
Confidence 45667 99999999887 7889999999987544 445555445689999999654432
Q ss_pred cccEEEEEecC
Q 015822 238 YMKCVYVYNKI 248 (399)
Q Consensus 238 ~~p~iiv~NK~ 248 (399)
...+++++|.
T Consensus 464 -~d~~~~~~~~ 473 (517)
T 4ad8_A 464 -AHHHYKVEKQ 473 (517)
T ss_dssp -SSEEEEEECC
T ss_pred -CCEEEEEecc
Confidence 3556777664
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.64 E-value=1.4e-05 Score=76.55 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC--CCCccccceeeeeceEEEE
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHY 106 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~ 106 (399)
|..|||+|+||||||||+++|+|... + ..|.+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~-----------~~G~i~v 115 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWP-----------EHRRVEL 115 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTST-----------TCCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCC-----------CCCeEEE
Confidence 67999999999999999999999753 3 6777776
No 357
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.57 E-value=3e-05 Score=79.50 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEe
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~ 110 (399)
|..++|+|+||||||||+|+|+|...+ ..|.+.+.|..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~-----------~~giitied~~ 297 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP-----------DAKVVSIEDTR 297 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT-----------TCCEEEEESSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC-----------CCCEEEEcCcc
Confidence 568999999999999999999998755 67888887643
No 358
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.56 E-value=2.1e-05 Score=69.19 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
|..++|+|+||||||||+++|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 359
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.54 E-value=2.6e-06 Score=78.30 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 111 (399)
..++|+|||||||||||++|+|...+ .+|.+.++|.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~-----------~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIP-----------DLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSC-----------CTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhccccc-----------CCCeEEECCEEc
Confidence 47899999999999999999998755 678888887765
No 360
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.54 E-value=3.4e-05 Score=68.52 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~ 87 (399)
|..++|+|+||||||||++.|++...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 67999999999999999999999763
No 361
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.46 E-value=2.5e-05 Score=69.43 Aligned_cols=51 Identities=27% Similarity=0.252 Sum_probs=39.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC--CCCccccceeeeeceEEEECCEeecccCc
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDL 116 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i~~~g~~i~~iD~ 116 (399)
-|+|+||+|||||||++.|....+ ..-..+.|||.|-+|.+ +|....+++.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~ 55 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSV 55 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecH
Confidence 378999999999999999986543 23467899999999875 5766666654
No 362
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.45 E-value=9.4e-05 Score=72.63 Aligned_cols=67 Identities=9% Similarity=0.054 Sum_probs=48.4
Q ss_pred ccccccchhhHhhcCce----------------eeeccCCCCCCHHHHHHHHHHhh---hCCcEEEEcCCCCHHHHHHHH
Q 015822 172 KRPPQIYFKKKKTGGIS----------------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVI 232 (399)
Q Consensus 172 ~~~~~LS~g~kqr~~ia----------------li~DEpts~LD~~~v~~ll~~l~---~~~~~v~vthd~~~~~~~~~i 232 (399)
.++..||+||++++.+| +++||||++||......+++.+. ...+++++||+..+..
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~----- 350 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELED----- 350 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGG-----
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHh-----
Confidence 45578999999987431 88999999999987666666554 2348999999965432
Q ss_pred hhccccccEEEEEecC
Q 015822 233 EGNRKYMKCVYVYNKI 248 (399)
Q Consensus 233 ~~~~~~~p~iiv~NK~ 248 (399)
....+++++|.
T Consensus 351 -----~~d~~~~l~k~ 361 (371)
T 3auy_A 351 -----VADVIINVKKD 361 (371)
T ss_dssp -----GCSEEEEEEES
T ss_pred -----hCCEEEEEEec
Confidence 23556677664
No 363
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.38 E-value=6.8e-05 Score=66.78 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
|..++|+|+||||||||+++|++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999999875
No 364
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=8.3e-05 Score=66.15 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 51 ~~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~ 85 (399)
.+++|.+.+ +..|+|+|+|||||||+.+.|++.
T Consensus 16 ~~~~~~~~~--~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 16 ENLYFQSNA--MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp --------C--CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceeEecCC--CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 477888877 679999999999999999999864
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.37 E-value=2.2e-05 Score=72.91 Aligned_cols=33 Identities=24% Similarity=0.169 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCCCCCCccccceeeeeceEEE
Q 015822 62 HGRVALIGFPSVGKSTLLTLLT---GTHSEAASYEFTTLTCIPGIIH 105 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~---g~~~~vs~~p~TT~~~~~G~i~ 105 (399)
+..|+|+|+||||||||+++|+ |...+ +.|.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~-----------d~g~i~ 62 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL-----------DSGAIY 62 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE-----------EHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC-----------CCCcee
Confidence 5799999999999999999999 87533 667766
No 366
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.34 E-value=0.00012 Score=63.76 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=25.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
++++.+.+ | ..+|+|+||||||||+.+|.+..
T Consensus 19 ~~~~~~~~--g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 19 KVVIPFSK--G-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp CEEEECCS--S-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEecCC--C-cEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443 5 89999999999999999998754
No 367
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.34 E-value=0.0019 Score=64.71 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..++++|+|||||||++..|+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999999654
No 368
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.27 E-value=7e-05 Score=66.90 Aligned_cols=43 Identities=21% Similarity=0.086 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC--CCCccccceeeeeceEE
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGII 104 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~--~vs~~p~TT~~~~~G~i 104 (399)
|..++|+|+||||||||.+.|..... .....+.||+.|..|.+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~ 56 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKET 56 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCC
Confidence 56899999999999999999986542 11234568888776654
No 369
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.26 E-value=9.9e-05 Score=63.62 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..|+|+|+||||||||.++|++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
No 370
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.25 E-value=4.5e-05 Score=71.80 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCCccccceeeeeceEEEECCEee
Q 015822 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (399)
Q Consensus 65 valvG~~gaGKSTLln~L~g~~~~vs~~p~TT~~~~~G~i~~~g~~i 111 (399)
++|+||||+|||||+++|+|... .+.+.++|.++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~-------------~~~i~i~g~~l 80 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG-------------LNFISVKGPEL 80 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT-------------CEEEEEETTTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC-------------CCEEEEEcHHH
Confidence 99999999999999999999752 25667766543
No 371
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.22 E-value=0.00014 Score=64.76 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
|..|+|+|+||||||||.++|++..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999999864
No 372
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.19 E-value=0.00015 Score=62.65 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
|..++|+|+||||||||.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 579999999999999999999874
No 373
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.16 E-value=0.00029 Score=70.40 Aligned_cols=51 Identities=10% Similarity=-0.050 Sum_probs=40.9
Q ss_pred ccccchhhHhhcCce-------------eeeccCCCCCCHHHHHHHHHHhh-h---CCcEEEEcCCCC
Q 015822 174 PPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK-I---HNAEVLFREDAT 224 (399)
Q Consensus 174 ~~~LS~g~kqr~~ia-------------li~DEpts~LD~~~v~~ll~~l~-~---~~~~v~vthd~~ 224 (399)
+..||+||++++++| +++|||+++||......++..+. . ..+++++||+..
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~ 398 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT 398 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHH
Confidence 456999999999877 78899999999997777766664 2 237899999843
No 374
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.08 E-value=0.00018 Score=65.60 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
|..++|+|++|||||||+++|++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 679999999999999999999985
No 375
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.06 E-value=0.0002 Score=62.35 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
|..++|+||||+|||||++++++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.06 E-value=0.00047 Score=61.37 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..++|+|+||||||||++.|.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999864
No 377
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.03 E-value=0.0002 Score=61.03 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..++|+|+||+|||||++++++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999999865
No 378
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.95 E-value=0.00022 Score=68.75 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=28.0
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~ 88 (399)
+++|.+.+ +..++|+|+||+||||++..|++...+
T Consensus 97 ~l~~~~~~--~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 97 RIDFKENR--LNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CCCCCTTS--CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CccccCCC--CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45554433 679999999999999999999987643
No 379
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.94 E-value=9.8e-05 Score=75.50 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=24.2
Q ss_pred cceEEEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 015822 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 53 ~~~~v~~~~g~~valvG~~gaGKSTLln~L~g 84 (399)
+.+++.+ +..+.|+|.+||||||++|+|..
T Consensus 160 v~ldL~~--~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAK--MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGG--SCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEccc--CceEEEECCCCCCHHHHHHHHHH
Confidence 3444444 67999999999999999999875
No 380
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.91 E-value=0.00038 Score=62.66 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..|+|+|+|||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 381
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.87 E-value=0.00055 Score=60.92 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..|+|+|+||||||||.+.|.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999999874
No 382
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.87 E-value=0.00051 Score=61.04 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
.|+|+|+|||||||+.+.|++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6999999999999999999983
No 383
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.77 E-value=0.00052 Score=60.81 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015822 64 RVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g 84 (399)
.|+|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
No 384
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.75 E-value=0.00024 Score=67.21 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=37.5
Q ss_pred cccEEEEEecCCCCChhhHH----HHHc-CCCEEEecchhccchHHHHHHHHHHh
Q 015822 238 YMKCVYVYNKIDVIGIDDVD----KLAR-QPNSVVISCNLKLNLDRLLARMWEEM 287 (399)
Q Consensus 238 ~~p~iiv~NK~Dl~~~~~~~----~l~~-~~~~i~vSa~~~~gl~~L~~~i~~~l 287 (399)
.+|.++|+||+|+.+.+..+ .+.+ ..+++++||.++.|+++|.+.+.+.+
T Consensus 50 ~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 50 NKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp SSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 37999999999998754332 2222 23689999999999999888776654
No 385
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.74 E-value=0.00045 Score=65.89 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=33.9
Q ss_pred ccEEEEEecCCCCChhh---HHHH---H-cC-CCEEEecchhccchHHHHHHHH
Q 015822 239 MKCVYVYNKIDVIGIDD---VDKL---A-RQ-PNSVVISCNLKLNLDRLLARMW 284 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~~---~~~l---~-~~-~~~i~vSa~~~~gl~~L~~~i~ 284 (399)
+|.++|+||+|+.+... .+.. . +. .+++++||+++.|+++|.+.+.
T Consensus 111 ~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 111 VEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 68999999999986542 2222 1 11 3589999999999999887654
No 386
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.74 E-value=0.00029 Score=64.88 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 015822 65 VALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 65 valvG~~gaGKSTLln~L~g~~ 86 (399)
++|+||||+|||||+++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999864
No 387
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.72 E-value=0.00065 Score=61.56 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
|..++|+|+||||||||++.|++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999999984
No 388
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.72 E-value=0.00024 Score=70.03 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=25.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 54 ~~~v~~~~g~~valvG~~gaGKSTLln~L~g~ 85 (399)
++.+.+ +..++|+||||+|||||+++|++.
T Consensus 163 ~~~i~~--~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 163 VYNIPK--KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHCCTT--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccCC--CCEEEEECCCCCCHHHHHHHHHhh
Confidence 445555 679999999999999999999974
No 389
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.72 E-value=0.0006 Score=65.64 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~~ 87 (399)
..+||+|+||||||||+++|.+...
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999988753
No 390
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.68 E-value=0.00099 Score=56.63 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 015822 63 GRVALIGFPSVGKSTLLTLLT 83 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~ 83 (399)
...+|+||||+|||||+.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 488999999999999999986
No 391
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.67 E-value=0.00062 Score=59.62 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|+|+|+|||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999854
No 392
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.64 E-value=0.00039 Score=65.10 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 015822 65 VALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 65 valvG~~gaGKSTLln~L~g~~ 86 (399)
++|+||||+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999999864
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.60 E-value=0.00097 Score=57.87 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
|..|+|+|++||||||+.+.|.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998753
No 394
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.46 E-value=0.00075 Score=61.63 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
|..|+|.|+|||||||+++.|....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998764
No 395
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.46 E-value=0.0014 Score=57.03 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
|..|+|+|+|||||||+.+.|+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 396
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.44 E-value=0.0015 Score=55.68 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
.|+|+|+|||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 397
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.44 E-value=0.0013 Score=65.61 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~ 88 (399)
+..++|+|||||||||||++|++...+
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 579999999999999999999986543
No 398
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.43 E-value=0.00071 Score=69.88 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~ 88 (399)
|..++|+|+||||||||+++|++...+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 679999999999999999999998643
No 399
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.43 E-value=0.0039 Score=60.77 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=31.6
Q ss_pred eceEEEECCEeecccCccccccccccCcccchhhccccCChhhhHHHHhcCC
Q 015822 100 IPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (399)
Q Consensus 100 ~~G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~ 151 (399)
....+.+++..+.++||+|-.... ......+++++.+++|+|.+.
T Consensus 184 ~~~~~~~~~~~l~iwDt~GQe~~r-------~~w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 184 VETHFTFKDLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGG-------GGGGGGCTTCSEEEEEEEGGG
T ss_pred EEEEEeeCCeeEEEEeCCCchhhh-------HHHHHHHhcCCEEEEEEECcc
Confidence 334567788999999999854321 122335688999999998765
No 400
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0011 Score=61.41 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
|..|+|+|++||||||+.++|++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 459999999999999999999874
No 401
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.41 E-value=0.0013 Score=62.59 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=34.1
Q ss_pred ccEEEEEecCCCCChhh---HHHHH-cC---CCEEEecchhccchHHHHHHHH
Q 015822 239 MKCVYVYNKIDVIGIDD---VDKLA-RQ---PNSVVISCNLKLNLDRLLARMW 284 (399)
Q Consensus 239 ~p~iiv~NK~Dl~~~~~---~~~l~-~~---~~~i~vSa~~~~gl~~L~~~i~ 284 (399)
.|.++|+||+|+..... ...+. .+ ..++++||+++.|++++.+.+.
T Consensus 116 ~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 116 LETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp CEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred CCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 69999999999986543 22221 11 4689999999999999887654
No 402
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.38 E-value=0.0017 Score=55.13 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 015822 63 GRVALIGFPSVGKSTLLTLL 82 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L 82 (399)
..|+|+|+|||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 403
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.37 E-value=0.0015 Score=57.19 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~ 86 (399)
..++|+|++|||||||++.|++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999763
No 404
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.37 E-value=0.0015 Score=57.83 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..|+|+|+||||||||.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 405
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.28 E-value=0.0023 Score=55.51 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|+|.|+|||||||+.+.|...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
No 406
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.25 E-value=0.0025 Score=55.54 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..|+|+|+|||||||+.+.|....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998764
No 407
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.22 E-value=0.0026 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~ 86 (399)
..|.|+|+|||||||+.+.|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998653
No 408
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.18 E-value=0.0027 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g 84 (399)
..|.|+|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999985
No 409
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.18 E-value=0.0026 Score=55.77 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
.|+|+|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999864
No 410
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.17 E-value=0.0026 Score=56.78 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 015822 63 GRVALIGFPSVGKSTLLTLLT 83 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~ 83 (399)
...+|+|+||||||||+.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 488999999999999999875
No 411
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.16 E-value=0.002 Score=61.25 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~ 87 (399)
+..++|+|+|||||||+++.|++...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998754
No 412
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.08 E-value=0.0057 Score=59.74 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=28.2
Q ss_pred eEEEECCEeecccCccccccccccCcccchhhccccCChhhhHHHHhcCC
Q 015822 102 GIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (399)
Q Consensus 102 G~i~~~g~~i~~iD~~Gl~~~~~~~~~~~~q~~~~~~~~d~il~v~d~~~ 151 (399)
..+.+++..+.++||+|-..... .....+++++.+++|+|.+.
T Consensus 194 ~~~~~~~~~l~i~Dt~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 194 YDFEIKNVPFKMVDVGGQRSERK-------RWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp EEEEETTEEEEEEEECC--------------CTTSCTTCCEEEEEEETTC
T ss_pred EEeeeCCeEEEEEeccchhhhhh-------hHHHHhCCCCEEEEEEECcc
Confidence 34667889999999999643221 22234678999999998876
No 413
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.06 E-value=0.004 Score=61.73 Aligned_cols=25 Identities=32% Similarity=0.208 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHH--hCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLL--TGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L--~g~~ 86 (399)
|..++|+|+||||||||+..| .+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~ 204 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQI 204 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhcc
Confidence 779999999999999999954 4544
No 414
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.05 E-value=0.0033 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
+..|.|+|+|||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 415
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.03 E-value=0.0037 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.309 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|+|.|+|||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 416
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.02 E-value=0.0037 Score=54.99 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..|+|.|++||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998653
No 417
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.98 E-value=0.0035 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
.|+|.|+|||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 418
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.94 E-value=0.0042 Score=55.43 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
|..|+|+|++||||||+.+.|.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998764
No 419
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.93 E-value=0.0035 Score=54.01 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
.|+|+|+|||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
No 420
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.89 E-value=0.0047 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
+..|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 421
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.87 E-value=0.0047 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..|.|+|++||||||+.+.|+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999743
No 422
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=95.87 E-value=0.014 Score=42.94 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=44.2
Q ss_pred cEEeecCCCCCCHHHHHHHHHHHHhhccceeEEeccCCccCCcccCCCceecCCCeEEEEeccc
Q 015822 306 PVVLSVDRGGCTVEDFCNHIHRSLVKDVKYVLVWGTSARHYPQHCGLGHVLQDEDVVQIVKKKE 369 (399)
Q Consensus 306 ~~~v~~~r~g~tv~~~a~~ih~~l~~~f~~a~~wg~s~~~~~~rvg~~~~l~d~dvv~i~~~~~ 369 (399)
...++. |+|+.+++..++.++.+....| +..|+.+.++++|++||.|+|++...
T Consensus 12 ~~~~~~---g~T~~dla~~i~~~l~~~~vaa-------~vNg~lvdl~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 12 IKRLPQ---GATALDFAYSLHSDLGDHCIGA-------KVNHKLVPLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp EEEECT---TCBHHHHHHHHCSHHHHTEEEE-------EETTEECCTTCBCCSSSBEEEEECCC
T ss_pred EEEcCC---CCcHHHHHHHHhhccccceEEE-------EECCEEeCCCcCcCCCCEEEEEECCC
Confidence 556677 9999999999988887765444 34788899999999999999998743
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.84 E-value=0.005 Score=55.04 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
+..|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 424
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.82 E-value=0.0045 Score=54.77 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|+|.|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 425
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.81 E-value=0.0048 Score=53.82 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
+..|+|+|+|||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
No 426
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.78 E-value=0.0046 Score=53.44 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
+..|.|+|+|||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34799999999999999999983
No 427
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.76 E-value=0.005 Score=54.82 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015822 64 RVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g 84 (399)
+|+|.|+|||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 428
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.75 E-value=0.0023 Score=56.79 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~ 86 (399)
.|+|+|++||||||+.+.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 429
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.74 E-value=0.0053 Score=53.65 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|+|+|+|||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
No 430
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.73 E-value=0.0055 Score=55.71 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
+..|+|+|+|||||||+.+.|++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999986
No 431
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.72 E-value=0.019 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~ 86 (399)
..+.|+||||+|||||.++|++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 378999999999999999999764
No 432
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.72 E-value=0.0054 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|+|.|++||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999853
No 433
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.69 E-value=0.0056 Score=54.60 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
+|+|+|+|||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999643
No 434
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.69 E-value=0.015 Score=56.92 Aligned_cols=88 Identities=18% Similarity=0.098 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhCC-cEEEEcCCCC-HH-HHHHHHhhccccccEEEEEecCCCCChh----hH----HHHH-c--C--C
Q 015822 200 EKLCYQILHEYKIHN-AEVLFREDAT-VD-DLIDVIEGNRKYMKCVYVYNKIDVIGID----DV----DKLA-R--Q--P 263 (399)
Q Consensus 200 ~~~v~~ll~~l~~~~-~~v~vthd~~-~~-~~~~~i~~~~~~~p~iiv~NK~Dl~~~~----~~----~~l~-~--~--~ 263 (399)
.+....+++.+.... .+++|- |.+ .+ .....+......+|.++|+||+|+.+.. .+ .... + . .
T Consensus 56 ~e~f~~~l~~i~~~~~~il~Vv-D~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIV-DIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPE 134 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEE-ETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHhccCcEEEEEE-ECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcc
Confidence 356677777776444 233222 222 11 1111122112257999999999997543 11 1111 1 1 1
Q ss_pred CEEEecchhccchHHHHHHHHHHhC
Q 015822 264 NSVVISCNLKLNLDRLLARMWEEMG 288 (399)
Q Consensus 264 ~~i~vSa~~~~gl~~L~~~i~~~l~ 288 (399)
+++.+||+++.|+++|.+.+.+.+.
T Consensus 135 ~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 135 DVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 5789999999999999999987654
No 435
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.66 E-value=0.0037 Score=64.42 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..++|+||||+|||||+++|++..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999999875
No 436
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.65 E-value=0.006 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 437
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.64 E-value=0.0065 Score=53.54 Aligned_cols=23 Identities=43% Similarity=0.562 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
+..|+|+|+|||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 438
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.63 E-value=0.0058 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..|+|+|++||||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 58999999999999999999864
No 439
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.61 E-value=0.0062 Score=54.99 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
|..++|+|+||+|||||+..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999665543
No 440
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.61 E-value=0.024 Score=55.35 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=39.4
Q ss_pred cccEEEEEecCCCCChh----hH----HH-HHc--C--CCEEEecchhccchHHHHHHHHHHhCceEE
Q 015822 238 YMKCVYVYNKIDVIGID----DV----DK-LAR--Q--PNSVVISCNLKLNLDRLLARMWEEMGLVRV 292 (399)
Q Consensus 238 ~~p~iiv~NK~Dl~~~~----~~----~~-l~~--~--~~~i~vSa~~~~gl~~L~~~i~~~l~~i~~ 292 (399)
.+|.++|+||+|+.+.+ .+ .. +.+ . .+++++||+++.|+++|.+.+.+.+.-.++
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i 165 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDV 165 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCE
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcE
Confidence 47999999999997542 11 11 111 1 247899999999999999999876654333
No 441
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.61 E-value=0.0067 Score=54.35 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|+|+|+|||||||+.+.|+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 442
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.58 E-value=0.0067 Score=56.02 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
.++|+|+||||||||-+.|+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999764
No 443
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.56 E-value=0.0067 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|+|+|+|||||||+.+.|+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999853
No 444
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.55 E-value=0.0048 Score=56.86 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..+.|+|+|||||||+.+.|....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998753
No 445
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.53 E-value=0.0071 Score=52.50 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015822 64 RVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g 84 (399)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 446
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.50 E-value=0.0077 Score=51.19 Aligned_cols=21 Identities=52% Similarity=0.727 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015822 64 RVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g 84 (399)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 447
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.49 E-value=0.0065 Score=52.64 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g 84 (399)
..|+|+|+|||||||+-+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 448
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.48 E-value=0.0074 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..++|.|||||||||+.+.|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999843
No 449
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.47 E-value=0.0071 Score=57.02 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..+.|+|+||||||||.+.|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 450
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.46 E-value=0.008 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~ 86 (399)
..++|+|++|||||||++.|....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999998753
No 451
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.44 E-value=0.0082 Score=51.95 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g 84 (399)
..|+|+|+|||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 452
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.43 E-value=0.0062 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=17.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|.|.|+|||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999743
No 453
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.38 E-value=0.0076 Score=51.42 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015822 64 RVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g 84 (399)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 454
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.37 E-value=0.0064 Score=55.82 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~ 86 (399)
-+.|+||||+|||||.++|++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 58999999999999999998753
No 455
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.32 E-value=0.0076 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
...|+|+|+|||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 456
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.26 E-value=0.0097 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
...|+|.|++||||||+.+.|...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999743
No 457
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.25 E-value=0.0093 Score=53.21 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015822 64 RVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g 84 (399)
+|+|.|+|||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 458
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.23 E-value=0.011 Score=54.74 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|.|+|+|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 459
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.22 E-value=0.01 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|+|+|+|||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 460
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.20 E-value=0.01 Score=53.45 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015822 64 RVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g 84 (399)
.|+|.|+|||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 461
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.19 E-value=0.011 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g 84 (399)
+..|+|.|+|||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999974
No 462
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.15 E-value=0.011 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
.|+|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999764
No 463
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.08 E-value=0.0039 Score=59.58 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=31.0
Q ss_pred cccEEEEEecCCCCChhh----HHHH---H-c-CCCEEEecchhccchHHHHH
Q 015822 238 YMKCVYVYNKIDVIGIDD----VDKL---A-R-QPNSVVISCNLKLNLDRLLA 281 (399)
Q Consensus 238 ~~p~iiv~NK~Dl~~~~~----~~~l---~-~-~~~~i~vSa~~~~gl~~L~~ 281 (399)
.+|.++|+||+|+.++.+ ++.+ + . ..+++++||.++.|+++|.+
T Consensus 117 ~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 117 DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 368899999999986533 2222 2 1 24689999999998876543
No 464
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.08 E-value=0.023 Score=56.63 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=27.3
Q ss_pred CcceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015822 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (399)
Q Consensus 52 ~~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~~~ 88 (399)
+++|. .+..++++|++||||||++..|++...+
T Consensus 92 ~i~l~----~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 92 LPVLK----DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCCC----SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cccCC----CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45555 3679999999999999999999987644
No 465
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.07 E-value=0.02 Score=57.39 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=37.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC-------CC------CCCCccc--cceeeeeceEEEEC---------C--EeecccCc
Q 015822 63 GRVALIGFPSVGKSTLLTLLTG-------TH------SEAASYE--FTTLTCIPGIIHYN---------D--TKIQLLDL 116 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g-------~~------~~vs~~p--~TT~~~~~G~i~~~---------g--~~i~~iD~ 116 (399)
..|+|+|+.++|||+|+|.|++ .. .+...++ .|+-..+.|...|. | ..+.++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4789999999999999997752 10 0011111 12333467776552 2 35888999
Q ss_pred ccccc
Q 015822 117 PGIIE 121 (399)
Q Consensus 117 ~Gl~~ 121 (399)
.|+..
T Consensus 148 EG~~d 152 (457)
T 4ido_A 148 QGTFD 152 (457)
T ss_dssp CCBTC
T ss_pred cCCCC
Confidence 99753
No 466
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.05 E-value=0.013 Score=49.92 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g 84 (399)
..|+|.|++||||||+-+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 467
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.01 E-value=0.013 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
++.|+|||||||+|.-+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999854
No 468
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.99 E-value=0.006 Score=62.17 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=24.3
Q ss_pred cceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 53 ~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+++.+.+ -+.|+||||+|||||+++|++..
T Consensus 59 lg~~ip~----GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 59 MGARIPK----GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSCCCCS----EEEEECSSSSSHHHHHHHHHHHT
T ss_pred ccCCCCc----eEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444 29999999999999999999864
No 469
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.88 E-value=0.016 Score=60.45 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~~ 88 (399)
|..++|+||||+|||||+++|++...+
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 468999999999999999999998643
No 470
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.88 E-value=0.015 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..|+|+|.+||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999743
No 471
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.78 E-value=0.017 Score=49.22 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..+.|.|++|+|||||++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999998765
No 472
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.77 E-value=0.017 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+..|.|+|+|||||||+.+.|+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 473
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.76 E-value=0.0076 Score=61.61 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=23.2
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 55 ~~v~~~~g~~valvG~~gaGKSTLln~L~g~ 85 (399)
+++....| ..+|+|+||||||||+.+|...
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 33444335 9999999999999999999443
No 474
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.73 E-value=0.019 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..|.|+|||||||||.-+.|+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999853
No 475
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.70 E-value=0.018 Score=51.47 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~ 86 (399)
..+.|.||||+|||||++++....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998653
No 476
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.70 E-value=0.016 Score=53.08 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..|+|.|++||||||+-+.|...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999763
No 477
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.64 E-value=0.021 Score=55.64 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 015822 63 GRVALIGFPSVGKSTLLTLLT 83 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~ 83 (399)
...+|+|+|||||||||-+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 488999999999999999975
No 478
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.59 E-value=0.012 Score=53.03 Aligned_cols=25 Identities=32% Similarity=0.137 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
|..|+|-|++||||||+.+.|....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999987543
No 479
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.58 E-value=0.017 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 015822 63 GRVALIGFPSVGKSTLLTLLT 83 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~ 83 (399)
..|+|.|++||||||+.+.|.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 480
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.48 E-value=0.022 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~ 86 (399)
..+.|.|+||+|||||++++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999999999998653
No 481
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.45 E-value=0.014 Score=55.27 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~~ 87 (399)
+..++++|+||+||||+++.|++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999997653
No 482
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.44 E-value=0.021 Score=54.84 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..+.|.|+||+|||||++.+.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999998753
No 483
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.41 E-value=0.01 Score=58.45 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=25.6
Q ss_pred cceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 53 ~~~~v~~~~g~~valvG~~gaGKSTLln~L~g~ 85 (399)
..+.+.+ |.+++|+|++|+|||||++.|++.
T Consensus 167 ~~~pi~r--GQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 167 LASPIGR--GQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHSCCBT--TCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeecC--CcEEEEecCCCCChhHHHHHHHHH
Confidence 3444444 789999999999999999998875
No 484
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.38 E-value=0.022 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTG 84 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g 84 (399)
..|.|+|+|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999985
No 485
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.28 E-value=0.023 Score=55.25 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
|..+.|+||||+|||||+..++...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998653
No 486
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.16 E-value=0.019 Score=55.79 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~ 86 (399)
.++|+|+|||||||+.++|++..
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 59999999999999999998754
No 487
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.14 E-value=0.022 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~ 86 (399)
..+.|.||||+|||||.+++++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 488
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.14 E-value=0.026 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~ 86 (399)
..+.|.||||+|||||.++|++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 478999999999999999999754
No 489
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.06 E-value=0.029 Score=51.17 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~ 85 (399)
..++||+|+|||||||+.+.|+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998753
No 490
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.03 E-value=0.023 Score=48.38 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
.+.|.|++|+|||||.+.+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998765
No 491
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.00 E-value=0.021 Score=54.76 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 015822 65 VALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 65 valvG~~gaGKSTLln~L~g~~ 86 (399)
+.|.||||+|||||++++++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999864
No 492
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.97 E-value=0.016 Score=62.59 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..|.|+||||+|||||+++|++..
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5689999999999999999999875
No 493
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.96 E-value=0.04 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~ 86 (399)
.-|.|.|+||+|||+|.++|....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 368899999999999999998653
No 494
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.89 E-value=0.036 Score=49.44 Aligned_cols=25 Identities=28% Similarity=0.143 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
|..|.|+|++|+|||||...|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999998653
No 495
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.84 E-value=0.16 Score=49.02 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~~ 86 (399)
..+.|.||||+||||+.++|+...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998654
No 496
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.78 E-value=0.034 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~ 85 (399)
.+.|.|++|+|||||++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999754
No 497
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.75 E-value=0.028 Score=54.21 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015822 64 RVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 64 ~valvG~~gaGKSTLln~L~g~~ 86 (399)
.+.|.||||+|||||++++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.65 E-value=0.039 Score=50.08 Aligned_cols=25 Identities=44% Similarity=0.522 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..|+|.|.+||||||+.+.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998653
No 499
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.62 E-value=0.033 Score=54.55 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 015822 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (399)
Q Consensus 62 g~~valvG~~gaGKSTLln~L~g~~ 86 (399)
+..++|+|+||+|||||++.|+...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999998754
No 500
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.61 E-value=0.036 Score=49.25 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 015822 63 GRVALIGFPSVGKSTLLTLLTGT 85 (399)
Q Consensus 63 ~~valvG~~gaGKSTLln~L~g~ 85 (399)
..|+|+|++||||||+.+.|...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999764
Done!