BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015824
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 610 bits (1573), Expect = e-175, Method: Compositional matrix adjust.
Identities = 301/394 (76%), Positives = 336/394 (85%)
Query: 6 NFGYSYNIWSLLFSVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPET 65
NF +Y L ++A+IEKT LNPSEVGDIVVGTVLAPGS RA ECRMAAFYAGFPET
Sbjct: 49 NFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPET 108
Query: 66 VPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQ 125
V +RTVNRQCSSGLQAVADVA AIKAG YDIGI AGLESMT N ++ G VNP V+ F Q
Sbjct: 109 VAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQ 168
Query: 126 ARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDP 185
A++CLLPMG+TSENVAQRFGV+RQEQD GKFKDEIIPV TK+VDP
Sbjct: 169 AQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDP 228
Query: 186 KTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSL 245
KTG EK +T+SVDDGIRP TT+A L KLKP FKKDGTTTAGN+SQVSDGAGAVLLMKRS+
Sbjct: 229 KTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSV 288
Query: 246 AVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQY 305
A+QKGLP+LGVFR+F+AVGVDP++MGIGPAVAIPAAVK+AGL++DDI+LFEINEAFASQ+
Sbjct: 289 AMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQF 348
Query: 306 VYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGS 365
VYC KLGLDPEK+NVNGGA+A+GHPLGATGARCVATLL EMKRRGKDCRFGV+SMCIG+
Sbjct: 349 VYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGT 408
Query: 366 GMGAAAVFERGDCVDELCNARMVPTHTHLSKDAK 399
GMGAAAVFERGD VDEL NAR V LSKDA+
Sbjct: 409 GMGAAAVFERGDGVDELRNARKVEAQGLLSKDAR 442
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 593 bits (1528), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/367 (77%), Positives = 322/367 (87%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
++A+IEKT +NP+EVGDIVVG+VL GS RA ECRMAAFYAGFPETVP+RTVNRQCSSGL
Sbjct: 66 LKALIEKTNINPAEVGDIVVGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 125
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSEN 139
QAVADVA AIKAG YDIGI AGLESMT N ++ G VNPKV+ QA+DCLLPMGITSEN
Sbjct: 126 QAVADVAAAIKAGFYDIGIGAGLESMTANPMAWEGSVNPKVKTMAQAQDCLLPMGITSEN 185
Query: 140 VAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDD 199
VAQ+F +TRQEQD G+FKDEIIP+ TKIVDPKTG EK VTISVDD
Sbjct: 186 VAQKFSITRQEQDQAAVGSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTISVDD 245
Query: 200 GIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRS 259
GIRP T++ADLAKLKP F+KDG+TTAG +SQVSDGAGAVLLMKRS+A+QKGLPILGVFR+
Sbjct: 246 GIRPGTSLADLAKLKPVFRKDGSTTAGTSSQVSDGAGAVLLMKRSIALQKGLPILGVFRT 305
Query: 260 FSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKV 319
F+AVGV PS+MGIGPAVAIPAAVK+AGLQIDDI+LFEINEAFASQ+VYC KKL +DP+K+
Sbjct: 306 FAAVGVPPSIMGIGPAVAIPAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDPQKI 365
Query: 320 NVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFERGDCV 379
NVNGGA+A+GHPLGATGARCVATLL EMKRRG+DCRFGV+SMCIG+GMGAAAVFERGD
Sbjct: 366 NVNGGAMAIGHPLGATGARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDAC 425
Query: 380 DELCNAR 386
DELCNA+
Sbjct: 426 DELCNAK 432
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 588 bits (1515), Expect = e-168, Method: Compositional matrix adjust.
Identities = 288/372 (77%), Positives = 322/372 (86%)
Query: 6 NFGYSYNIWSLLFSVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPET 65
NF +Y L ++A+IEKT LNPSEVGDIVVGTVLAPGS RA ECRMAAFYAGFPET
Sbjct: 32 NFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPET 91
Query: 66 VPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQ 125
V +RTVNRQCSSGLQAVADVA AIKAG YDIGI AGLESMT N ++ G VNP V+ F Q
Sbjct: 92 VAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQ 151
Query: 126 ARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDP 185
A++CLLPMG+TSENVAQRFGV+RQEQD GKFKDEIIPV TK+VDP
Sbjct: 152 AQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDP 211
Query: 186 KTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSL 245
KTG EK +T+SVDDGIRP TT+A L KLKP FKKDGTTTAGN+SQVSDGAGAVLLMKRS+
Sbjct: 212 KTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSV 271
Query: 246 AVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQY 305
A+QKGLP+LGVFR+F+AVGVDP++MGIGPAVAIPAAVK+AGL++DDI+LFEINEAFASQ+
Sbjct: 272 AMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQF 331
Query: 306 VYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGS 365
VYC KLGLDPEK+NVNGGA+A+GHPLGATGARCVATLL EMKRRGKDCRFGV+SMCIG+
Sbjct: 332 VYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGT 391
Query: 366 GMGAAAVFERGD 377
GMGAAAVFERGD
Sbjct: 392 GMGAAAVFERGD 403
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/353 (58%), Positives = 263/353 (74%), Gaps = 3/353 (0%)
Query: 22 AVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQA 81
AV++ L P ++GDI VG VL PG+ A+ R+A F + PETVPL TVNRQCSSGLQA
Sbjct: 65 AVLKDVNLRPEQLGDICVGNVLQPGAG-AIMARIAQFLSDIPETVPLSTVNRQCSSGLQA 123
Query: 82 VADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVA 141
VA +A I+ G YDIG+A G+ESM++ G + ++ +ARDCL+PMGITSENVA
Sbjct: 124 VASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENVA 183
Query: 142 QRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGI 201
+RFG++R++QD G F+ EI+PV T + D K G ++ +T++ D+GI
Sbjct: 184 ERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDK-GTKRSITVTQDEGI 242
Query: 202 RPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFS 261
RP+TT+ LAKLKPAFKKDG+TTAGN+SQVSDGA A+LL +RS A + GLPILGV RS++
Sbjct: 243 RPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYA 302
Query: 262 AVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNV 321
VGV P +MGIGPA AIP A++ AGL + D+++FEINEAFASQ YC++KL L PEKVN
Sbjct: 303 VVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNP 362
Query: 322 NGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 374
GGAVALGHPLG TGAR V TLL+E+KRRGK +GV+SMCIG+GMGAAAVFE
Sbjct: 363 LGGAVALGHPLGCTGARQVITLLNELKRRGKRA-YGVVSMCIGTGMGAAAVFE 414
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 311 bits (796), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 231/353 (65%), Gaps = 18/353 (5%)
Query: 25 EKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVAD 84
E R + + + ++ G VL G+ A E R A +G P + P +NRQCSSGL AV D
Sbjct: 49 EPLRADLNLIEEVACGNVLNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVND 107
Query: 85 VATAIKAGLYDIGIAAGLESMTVN--SISVVGQVN-PKVEIFTQARDCLLPMGITSENVA 141
+A IK G DIG+A G+ESMT N +++ +G ++ +++ +A+ CL+PMGIT+ENVA
Sbjct: 108 IANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVA 167
Query: 142 QRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGI 201
F ++R++QD G F+DEI+P+ K+ D D+G
Sbjct: 168 ANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPI--KLPDGSI-------CQSDEGP 218
Query: 202 RPNTTIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSF 260
RPN T L+ ++PAF KD GTTTAGNASQVSDG VLL +RS+A Q LP+LG + F
Sbjct: 219 RPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDF 278
Query: 261 SAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVN 320
VGV P +MG+GPA AIP +++ GLQ+ DI++FEINEAFA+Q +YCI KLG+D KVN
Sbjct: 279 QTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVN 338
Query: 321 VNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVF 373
GGA+ALGHPLG TGAR VAT+L E+K+ + GV+SMCIG+GMGAAA+F
Sbjct: 339 PRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGAAAIF 387
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 311 bits (796), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 231/353 (65%), Gaps = 18/353 (5%)
Query: 25 EKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVAD 84
E R + + + ++ G VL G+ A E R A +G P + P +NRQCSSGL AV D
Sbjct: 52 EPLRADLNLIEEVACGNVLNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVND 110
Query: 85 VATAIKAGLYDIGIAAGLESMTVN--SISVVGQVN-PKVEIFTQARDCLLPMGITSENVA 141
+A IK G DIG+A G+ESMT N +++ +G ++ +++ +A+ CL+PMGIT+ENVA
Sbjct: 111 IANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVA 170
Query: 142 QRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGI 201
F ++R++QD G F+DEI+P+ K+ D D+G
Sbjct: 171 ANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPI--KLPDGSI-------CQSDEGP 221
Query: 202 RPNTTIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSF 260
RPN T L+ ++PAF KD GTTTAGNASQVSDG VLL +RS+A Q LP+LG + F
Sbjct: 222 RPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDF 281
Query: 261 SAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVN 320
VGV P +MG+GPA AIP +++ GLQ+ DI++FEINEAFA+Q +YCI KLG+D KVN
Sbjct: 282 QTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVN 341
Query: 321 VNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVF 373
GGA+ALGHPLG TGAR VAT+L E+K+ + GV+SMCIG+GMGAAA+F
Sbjct: 342 PRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGAAAIF 390
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 251 bits (640), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 210/365 (57%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P A R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGANPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 209/365 (57%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ C SGL
Sbjct: 32 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 90
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 91 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 150
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 151 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 204
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 205 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 264
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 265 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 324
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 325 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 382
Query: 370 AAVFE 374
A E
Sbjct: 383 AMCIE 387
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 209/365 (57%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 247 bits (630), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 209/365 (57%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E +EAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 209/365 (57%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E +EAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEADEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 207/365 (56%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+Q +++ + P EV ++++G + + A R AA AGFP+TV T+ RQ SSG+
Sbjct: 37 LQEAVKRGGVEPHEVDEVILGHCIQR-TDEANTARTAALAAGFPDTVTGYTIQRQXSSGM 95
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISV----VGQVNPKVEIFTQARDCL----- 130
QA+ A I+ G+ ++ +A G+E+M+ + ++ GQ EI + L
Sbjct: 96 QAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIH 155
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
+ MG T+EN+ +++ +TR+EQD G F D+I+P+ K
Sbjct: 156 HIMMGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIK------ER 209
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
K V S D+ R + T LA LKPAF+KDG+ TAGNAS ++DG+ ++LM A +K
Sbjct: 210 RKEVVFSKDEHPRADITAEKLAGLKPAFRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEK 269
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
GL L +S GVDP +MGIGPA AI ++ ++D +L EINEAFA+QY+
Sbjct: 270 GLQPLARIVGYSVAGVDPKIMGIGPAPAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVE 329
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K+L LD EKVNVNG V LGHP+G TGAR +L+ E+KRRG G+ S+C+G G+G
Sbjct: 330 KELDLDREKVNVNGSGVGLGHPIGCTGARITVSLIHELKRRG--LEKGIASLCVGGGIGV 387
Query: 370 AAVFE 374
A E
Sbjct: 388 ALFIE 392
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 208/365 (56%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLAGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 209/365 (57%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+G+P+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGNPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 208/365 (56%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ SGL
Sbjct: 32 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 90
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 91 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 150
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 151 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 204
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 205 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 264
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 265 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 324
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 325 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 382
Query: 370 AAVFE 374
A E
Sbjct: 383 AMCIE 387
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 208/365 (56%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 208/365 (56%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+G P+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 244 bits (622), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 209/365 (57%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E +EAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+G+P+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGNPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 212/368 (57%), Gaps = 20/368 (5%)
Query: 19 SVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSG 78
+ + I++ + P + + ++G VL G + + R A AG P P T+N C SG
Sbjct: 38 AAKEAIKRANITPDMIDESLLGGVLTAGLGQNI-ARQIALGAGIPVEKPAMTINIVCGSG 96
Query: 79 LQAVADVATAIKAGLYDIGIAAGLESMTVN-----SISVVGQVNPKVEIFTQARDCL--- 130
L++V+ + I G DI + G E+M+++ S ++ + + +D L
Sbjct: 97 LRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDI 156
Query: 131 ---LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKT 187
MGIT+EN+A+++ +TR+EQD GKF +EI+PV K T
Sbjct: 157 FNNYHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDT 216
Query: 188 GVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAV 247
V+K D+ I+P TT+ LAKL+PAFKKDGT TAGNAS ++DGA +++M + A
Sbjct: 217 VVDK------DEYIKPGTTMEKLAKLRPAFKKDGTVTAGNASGINDGAAMLVVMAKEKAE 270
Query: 248 QKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVY 307
+ G+ L S+ GVDP +MG GP A A+++A + I+DI+L E NEAFA+Q V
Sbjct: 271 ELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVA 330
Query: 308 CIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGM 367
I+ L +D KVNVNGGA+A+GHP+G +GAR + TLL EMKRR D + G+ ++CIG GM
Sbjct: 331 VIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRR--DAKTGLATLCIGGGM 388
Query: 368 GAAAVFER 375
G + +R
Sbjct: 389 GTTLIVKR 396
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 147/374 (39%), Positives = 217/374 (58%), Gaps = 29/374 (7%)
Query: 18 FSVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSS 77
+V+ I + LN SE+ ++++G VL G + + R A AG P +VP TVN+ C S
Sbjct: 35 IAVKEAISRVGLNLSEIDEVIIGNVLQTGLGQNV-ARQIAINAGIPNSVPSYTVNKLCGS 93
Query: 78 GLQAVADVATAIKAGLYDIGIAAGLESMT--------------VNSISVVGQV--NPKVE 121
GL++V A +I +G D+ IA G E+M+ + +I++V + + ++
Sbjct: 94 GLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLID 153
Query: 122 IFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK 181
F Q MGIT+EN+A +F TR+ QD +FK+EI+PV+
Sbjct: 154 AFNQYH-----MGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVL 208
Query: 182 IVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLM 241
I K +E TI D+ + T L+KLKPAFKKDGT TAGNAS ++DGA ++LM
Sbjct: 209 IRRGK--IE---TIDKDEYPKLGMTFEGLSKLKPAFKKDGTVTAGNASGINDGAAMLILM 263
Query: 242 KRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAF 301
+ A + G+ L +S+++ GV+P VMG GP A A+K AGL I+DI+L E NEAF
Sbjct: 264 SQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIPATRKALKKAGLSINDIDLIEANEAF 323
Query: 302 ASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISM 361
A+Q + +L +D K+NVNGGA+ALGHP+GA+GAR + TL+ EM++R G+ ++
Sbjct: 324 AAQALAVKNELQIDSSKLNVNGGAIALGHPIGASGARILVTLIYEMQKR--KVETGLATL 381
Query: 362 CIGSGMGAAAVFER 375
CIG G G + V R
Sbjct: 382 CIGGGQGISMVVSR 395
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 208/365 (56%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+G+P+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGNPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 240 bits (613), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 207/365 (56%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+G P+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 240 bits (613), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 207/365 (56%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+G P+GA+GAR + TLL EMKRRG R G+ ++ IG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRG--ARKGLATLXIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 206/365 (56%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL P R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+G P+GA+GAR + TLL EMKRRG R G+ ++ IG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRG--ARKGLATLXIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 212/381 (55%), Gaps = 34/381 (8%)
Query: 16 LLFSVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQC 75
L ++ +++++ + EV D+ G G RMA AGFP V TVNR C
Sbjct: 30 LAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLC 89
Query: 76 SSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISV------------------VGQ-- 115
SGL+AVA A AI AG + I +G+ESM+ +V +G
Sbjct: 90 GSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRF 149
Query: 116 VNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEI 175
VNPK++ MG T+EN+A+ +G+ R+EQD G+F+DE+
Sbjct: 150 VNPKMQALYGTES----MGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEV 205
Query: 176 IPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGA 235
+PV K G E+ + + D+G R +T++ LA L+P F++ GT TAGN+S ++DGA
Sbjct: 206 VPVPVK-----RGKEE-ILVEQDEGPRRDTSLEKLAALRPVFREGGTVTAGNSSPLNDGA 259
Query: 236 GAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLF 295
AVLL+ A GL L R+ + GV P +MGIGP A A++ AGL D+ L
Sbjct: 260 AAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLI 319
Query: 296 EINEAFASQYVYCIKK--LGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKD 353
E+NEAFA+Q + +++ L ++ +++N NGGA+ALGHPLGA+GAR + TL+ EM+RR
Sbjct: 320 ELNEAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRR--K 377
Query: 354 CRFGVISMCIGSGMGAAAVFE 374
+FG+ +MCIG G G A V E
Sbjct: 378 VQFGLATMCIGVGQGIAVVVE 398
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 209/365 (57%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL G + R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVLPAGEGQN-PARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E EAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 231 bits (590), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/361 (39%), Positives = 203/361 (56%), Gaps = 14/361 (3%)
Query: 20 VQAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSG 78
+ V+E+ ++++P EV D++ G V RMA+ P T +TV+R C S
Sbjct: 38 ISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSS 97
Query: 79 LQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSE 138
+ A+ A AI G D+ + G+E M +S++ V+P + A MG+T+E
Sbjct: 98 MSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHMSLYAAKASGMMGLTAE 155
Query: 139 NVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVD 198
+ + G++R++QD GKFKDEIIP+ + G K D
Sbjct: 156 MLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGY---DENGFLK--IFDYD 210
Query: 199 DGIRPNTTIADLAKLKPAFK-KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVF 257
+ IRP+TT+ LA LKPAF K GT TAG +SQ++DGA +++M A GL L V
Sbjct: 211 ETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVI 270
Query: 258 RSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLG-LDP 316
RS + GVDP++MG GP A A+K AGL + DI+ E+NEAFA+Q + +K L LD
Sbjct: 271 RSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDK 330
Query: 317 --EKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 374
EKVN++GGA+ALGHP G +GAR TLL+ MK+ G FG+ +MCIG G G A VFE
Sbjct: 331 MNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGLSTMCIGLGQGIATVFE 388
Query: 375 R 375
R
Sbjct: 389 R 389
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 230 bits (587), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 208/365 (56%), Gaps = 19/365 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL G + R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVLPAGEGQN-PARQAAMKAGVPQEATAWGMNQLXGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIF----TQARDCL----- 130
+AVA I G I +A G+ESM++ + K+ F T +D L
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 131 -LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGV 189
MG T+ENVA+++ ++R EQD G+FKDEI+P K G
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GR 207
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 249
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A ++
Sbjct: 208 KGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 250 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCI 309
G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E EAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVN 327
Query: 310 KKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 370 AAVFE 374
A E
Sbjct: 386 AMCIE 390
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 213/370 (57%), Gaps = 25/370 (6%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
++ V+++ + P +V +++ G VLA G + R A+ AG P +VP + SGL
Sbjct: 38 IKEVLKRATVAPEDVSEVIFGHVLAAGCGQN-PVRQASVGAGIPYSVPAWSCQMIXGSGL 96
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMT-------VNSISVVGQVNPKVEIFTQA-----R 127
+AV +I G I +A G+E+M+ + + +G++ I
Sbjct: 97 KAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFH 156
Query: 128 DCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKT 187
+C MGIT+ENVA+++ V+R++QD G F EI+PV +V +
Sbjct: 157 NC--HMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPV---LVSTRK 211
Query: 188 GVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGT--TTAGNASQVSDGAGAVLLMKRSL 245
G+ + + D+ R + I ++KLKP F DGT T NAS ++DGA AV+LMK+S
Sbjct: 212 GL---IEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSE 268
Query: 246 AVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQY 305
A ++GL L S+S VGV+PS+MGIGP AI AV AG ++D+++FEINEAFA+
Sbjct: 269 ADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVS 328
Query: 306 VYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGS 365
+K+LGL+PEKVN+ GGA+ALGHPLGA+G R + TLL ++R G+ GV ++CIG
Sbjct: 329 AAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGRS--RGVAALCIGG 386
Query: 366 GMGAAAVFER 375
GMG A +R
Sbjct: 387 GMGIAMCVQR 396
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 176/326 (53%), Gaps = 13/326 (3%)
Query: 54 RMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVV 113
R AA A P +VP TVNR C S QA+ D A I G + + G+E S
Sbjct: 70 RNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHXGHVPXSHG 129
Query: 114 GQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKD 173
+P + G+T+E +++ G++R+ QD G FK
Sbjct: 130 VDFHPGLS--RNVAKAAGXXGLTAEXLSRLHGISREXQDQFAARSHARAWAATQSGAFKT 187
Query: 174 EIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK-DGTTTAGNASQVS 232
EIIP D GV K+ + D+ IRP TT+ L+ L+PAF GT TAG +S +S
Sbjct: 188 EIIPTGGHDAD---GVLKQ--FNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALS 242
Query: 233 DGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDI 292
DGA A L+ S A + GL RS + VG DPS+ G GP A A+K AGL DI
Sbjct: 243 DGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPVPASKLALKKAGLSASDI 302
Query: 293 NLFEINEAFASQYVYCIKKLGLDP---EKVNVNGGAVALGHPLGATGARCVATLLSEMKR 349
++FE NEAFA+Q + CIK LGL EK+N+NGGA+ALGHPLG +GAR TL++ +R
Sbjct: 303 DVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNGGAIALGHPLGCSGARISTTLINLXER 362
Query: 350 RGKDCRFGVISMCIGSGMGAAAVFER 375
KD +FG+ + CIG G G A VFER
Sbjct: 363 --KDAQFGLATXCIGLGQGIATVFER 386
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/371 (33%), Positives = 185/371 (49%), Gaps = 38/371 (10%)
Query: 29 LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATA 88
L+ + + D+++G V G R A AG PET +NR C+SGL+AV A
Sbjct: 50 LDETLISDMILGVVSPVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQK 109
Query: 89 IKAGLYDIGIAAGLESMT---VNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFG 145
+++G D+ +A G+ESM+ + S +P+ T R +P GI ++ +A G
Sbjct: 110 VRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPE----TNYRIGFVPQGIGADLIATLEG 165
Query: 146 VTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNT 205
+R++ D G F ++PV + V + D+ +RP+T
Sbjct: 166 FSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQ--------NGLVILDHDEHMRPDT 217
Query: 206 TIADLAKLKPAF---------------------KKDGTTTAGNASQVSDGAGAVLLMKRS 244
T+ LAKLK AF K + T GN+S + DGA VL+
Sbjct: 218 TMEGLAKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEK 277
Query: 245 LAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQ 304
+GL + + G DP +M GP A + AGL IDDI+LFE+NEAFAS
Sbjct: 278 AGKSQGLTPRARIVATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASV 337
Query: 305 YVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIG 364
+ K L + EK+NVNGGA+A+GHPLGATGA T++ E++RR + R +I++CIG
Sbjct: 338 VLKFQKDLNIPDEKLNVNGGAIAMGHPLGATGAMITGTMVDELERR--NARRALITLCIG 395
Query: 365 SGMGAAAVFER 375
GMG A + ER
Sbjct: 396 GGMGVATIIER 406
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 190/369 (51%), Gaps = 23/369 (6%)
Query: 18 FSVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSS 77
++Q IEK + EV + +G VL G +A R A AG P + P T+N+ C+S
Sbjct: 38 IAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQA-PTRQAVLGAGLPISTPCTTINKVCAS 96
Query: 78 GLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNP----KVEIFTQARDCL--- 130
G++A+ + ++ G D+ +A G+ESM+ + P K+E +D L
Sbjct: 97 GMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLI-VKDGLTDV 155
Query: 131 ---LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKT 187
+ MG +EN A++ + R EQD GKF +E+IPV +
Sbjct: 156 YNKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKG--- 212
Query: 188 GVEKRVTISVDDGIRPNTTIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLA 246
+ V + D+ + + + KLK F+K+ GT TA NAS ++DGA A++LM A
Sbjct: 213 --QPDVVVKEDEEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAA 269
Query: 247 VQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYV 306
+ + L +F+ V+P I P A +K GL+ +DI ++E+NEAF+ +
Sbjct: 270 KRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVL 329
Query: 307 YCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSG 366
IK L +DP+KVN+NGGAV+LGHP+G +GAR V L +K+ +G+ S+C G G
Sbjct: 330 ANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ----GEYGLASICNGGG 385
Query: 367 MGAAAVFER 375
+A + ++
Sbjct: 386 GASAMLIQK 394
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 189/369 (51%), Gaps = 23/369 (6%)
Query: 18 FSVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSS 77
++Q IEK + EV + +G VL G +A R A AG P + P T+N+ +S
Sbjct: 49 IAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQA-PTRQAVLGAGLPISTPCTTINKVXAS 107
Query: 78 GLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNP----KVEIFTQARDCL--- 130
G++A+ + ++ G D+ +A G+ESM+ + P K+E +D L
Sbjct: 108 GMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLI-VKDGLTDV 166
Query: 131 ---LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKT 187
+ MG +EN A++ + R EQD GKF +E+IPV +
Sbjct: 167 YNKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKG--- 223
Query: 188 GVEKRVTISVDDGIRPNTTIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLA 246
+ V + D+ + + + KLK F+K+ GT TA NAS ++DGA A++LM A
Sbjct: 224 --QPDVVVKEDEEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAA 280
Query: 247 VQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYV 306
+ + L +F+ V+P I P A +K GL+ +DI ++E+NEAF+ +
Sbjct: 281 KRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVL 340
Query: 307 YCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSG 366
IK L +DP+KVN+NGGAV+LGHP+G +GAR V L +K+ +G+ S+C G G
Sbjct: 341 ANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ----GEYGLASICNGGG 396
Query: 367 MGAAAVFER 375
+A + ++
Sbjct: 397 GASAMLIQK 405
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 189/369 (51%), Gaps = 23/369 (6%)
Query: 18 FSVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSS 77
++Q IEK + EV + +G VL G +A R A AG P + P T+N+ +S
Sbjct: 38 IAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQA-PTRQAVLGAGLPISTPCTTINKVXAS 96
Query: 78 GLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNP----KVEIFTQARDCL--- 130
G++A+ + ++ G D+ +A G+ESM+ + P K+E +D L
Sbjct: 97 GMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLI-VKDGLTDV 155
Query: 131 ---LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKT 187
+ MG +EN A++ + R EQD GKF +E+IPV +
Sbjct: 156 YNKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKG--- 212
Query: 188 GVEKRVTISVDDGIRPNTTIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLA 246
+ V + D+ + + + KLK F+K+ GT TA NAS ++DGA A++LM A
Sbjct: 213 --QPDVVVKEDEEYK-RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAA 269
Query: 247 VQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYV 306
+ + L +F+ V+P I P A +K GL+ +DI ++E+NEAF+ +
Sbjct: 270 KRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVL 329
Query: 307 YCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSG 366
IK L +DP+KVN+NGGAV+LGHP+G +GAR V L +K+ +G+ S+C G G
Sbjct: 330 ANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ----GEYGLASICNGGG 385
Query: 367 MGAAAVFER 375
+A + ++
Sbjct: 386 GASAMLIQK 394
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 223 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI----GPAVA- 277
+ A + +++GAG ++L + S A ++G P+L V R SAV D + G+ GPA
Sbjct: 254 SKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRG-SAVNQDGASNGLTAPSGPAQQR 312
Query: 278 -IPAAVKSAGLQIDDINLFEIN 298
I A+++AG++ D++ E +
Sbjct: 313 VIRRALENAGVRAGDVDYVEAH 334
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 2 YCCCNFGYSYNIWSLLF---SVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAF 58
+C + G +N W+ L+ T NP +G G VL P R + R A
Sbjct: 900 WCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGK--QGRVLHPEQHRVVSVRECAR 957
Query: 59 YAGFPETVPL 68
GFP+T L
Sbjct: 958 SQGFPDTYRL 967
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 2 YCCCNFGYSYNIWSLLF---SVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAF 58
+C + G +N W+ L+ T NP +G G VL P R + R A
Sbjct: 854 WCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGK--QGRVLHPEQHRVVSVRECAR 911
Query: 59 YAGFPETVPL 68
GFP+T L
Sbjct: 912 SQGFPDTYRL 921
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 280 AAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARC 339
AA + G +D+++ F I++ +K G+DP KV G G G
Sbjct: 247 AARQVLGWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFG------EHGNIGPAS 300
Query: 340 VATLLSEMKRRGKDCRFGVISMC-IGSGM 367
V +LS++K G+ + I++ IGSG+
Sbjct: 301 VPIVLSKLKELGRLKKGDRIALLGIGSGL 329
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 201 IRPNTTIA--DLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLA 246
++PNT++ L L P TAGN S+G AVLL K+SLA
Sbjct: 194 LKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLA 241
>pdb|2D0O|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0O|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0P|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
pdb|2D0P|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
Length = 610
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 13/68 (19%)
Query: 233 DGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDI 292
D AGA+ + +LA G I G R+ V GI A+A+ A + AG+ + DI
Sbjct: 22 DEAGALTITHSALAETTG--IKGTLRN---------VFGIQEALALVA--RGAGIAVSDI 68
Query: 293 NLFEINEA 300
+L INEA
Sbjct: 69 SLIRINEA 76
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 215 PAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 256
PA TT N + GAG ++M+ LA++ G+PI G+
Sbjct: 1163 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGI 1204
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 280 AAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARC 339
AA + G +++++ F I++ +K G+DP KV G G G
Sbjct: 254 AAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFG------EHGNIGPAS 307
Query: 340 VATLLSEMKRRGKDCRFGVISMC-IGSGM 367
V +LS++K G+ + I++ IGSG+
Sbjct: 308 VPIVLSKLKELGRLKKGDRIALLGIGSGL 336
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 280 AAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARC 339
AA + G +++++ F I++ +K G+DP KV G G G
Sbjct: 253 AAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFG------EHGNIGPAS 306
Query: 340 VATLLSEMKRRGKDCRFGVISMC-IGSGM 367
V +LS++K G+ + I++ IGSG+
Sbjct: 307 VPIVLSKLKELGRLKKGDRIALLGIGSGL 335
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 215 PAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGP 274
PA TT N + GAG ++M+ LA++ G+PI G+ + +A D IG
Sbjct: 1362 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATDK----IGR 1416
Query: 275 AVAIP 279
+V P
Sbjct: 1417 SVPAP 1421
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 215 PAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGP 274
PA TT N + GAG ++M+ LA++ G+PI G+ + +A D IG
Sbjct: 1362 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATDK----IGR 1416
Query: 275 AVAIP 279
+V P
Sbjct: 1417 SVPAP 1421
>pdb|1T2Q|H Chain H, The Crystal Structure Of An Nna7 Fab That Recognizes An
N-Type Blood Group Antigen
Length = 221
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 2 YCCCNFGYSYNIWSLLFSVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAG 61
YC N GYSY + S + + P V + G+ S + C + +
Sbjct: 95 YCARNRGYSYAMDSWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY--- 151
Query: 62 FPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDI 96
FPE V + + SSG+ V +++ LY +
Sbjct: 152 FPEPVTVTWNSGSLSSGVHTFPAV---LQSDLYTL 183
>pdb|2D03|H Chain H, Crystal Structure Of The G91s Mutant Of The Nna7 Fab
Length = 223
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 2 YCCCNFGYSYNIWSLLFSVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAG 61
YC N GYSY + S + + P V + G+ S + C + +
Sbjct: 95 YCARNRGYSYAMDSWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY--- 151
Query: 62 FPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDI 96
FPE V + + SSG+ V +++ LY +
Sbjct: 152 FPEPVTVTWNSGSLSSGVHTFPAV---LQSDLYTL 183
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 222 TTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 256
T+T N S G G ++M LA++ G+PI G+
Sbjct: 1344 TSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGI 1378
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,751,623
Number of Sequences: 62578
Number of extensions: 413638
Number of successful extensions: 1158
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 75
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)