RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015824
(399 letters)
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 619 bits (1600), Expect = 0.0
Identities = 309/380 (81%), Positives = 346/380 (91%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
++A+IEKT LNPSEVGDIVVGTVLAPGS RA ECRMAAFYAGFPETV +RTVNRQCSSGL
Sbjct: 63 LRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGL 122
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSEN 139
QAVADVA AIKAG YDIGI AGLESMT N ++ G VNP V+ F QA++CLLPMG+TSEN
Sbjct: 123 QAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSEN 182
Query: 140 VAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDD 199
VAQRFGV+RQEQD AAV+SHR+AAAATA+GKFKDEIIPV TK+VDPKTG EK +T+SVDD
Sbjct: 183 VAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDD 242
Query: 200 GIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRS 259
GIRP TT+A L KLKP FKKDGTTTAGN+SQVSDGAGAVLLMKRS+A+QKGLP+LGVFR+
Sbjct: 243 GIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRT 302
Query: 260 FSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKV 319
F+AVGVDP++MGIGPAVAIPAAVK+AGL++DDI+LFEINEAFASQ+VYC KLGLDPEK+
Sbjct: 303 FAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKI 362
Query: 320 NVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFERGDCV 379
NVNGGA+A+GHPLGATGARCVATLL EMKRRGKDCRFGV+SMCIG+GMGAAAVFERGD V
Sbjct: 363 NVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGV 422
Query: 380 DELCNARMVPTHTHLSKDAK 399
DEL NAR V LSKDA+
Sbjct: 423 DELRNARKVEAQGLLSKDAR 442
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 569 bits (1469), Expect = 0.0
Identities = 212/357 (59%), Positives = 273/357 (76%), Gaps = 3/357 (0%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV++ L P ++GDI VG VL PG+ A+ R+A F + PETVPL TVNRQCSSGL
Sbjct: 63 MTAVLKDVNLRPEQLGDICVGNVLQPGA-GAIMARIAQFLSDIPETVPLSTVNRQCSSGL 121
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSEN 139
QAVA +A I+ G YDIG+A G+ESM++ G + ++ +ARDCL+PMGITSEN
Sbjct: 122 QAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSEN 181
Query: 140 VAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDD 199
VA+RFG++R++QD A+ S ++AA A + G F+ EI+PV T + D K G ++ +T++ D+
Sbjct: 182 VAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDK-GTKRSITVTQDE 240
Query: 200 GIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRS 259
GIRP+TT+ LAKLKPAFKKDG+TTAGN+SQVSDGA A+LL +RS A + GLPILGV RS
Sbjct: 241 GIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRS 300
Query: 260 FSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKV 319
++ VGV P +MGIGPA AIP A++ AGL + D+++FEINEAFASQ YC++KL L PEKV
Sbjct: 301 YAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKV 360
Query: 320 NVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFERG 376
N GGAVALGHPLG TGAR V TLL+E+KRRGK +GV+SMCIG+GMGAAAVFE
Sbjct: 361 NPLGGAVALGHPLGCTGARQVITLLNELKRRGKR-AYGVVSMCIGTGMGAAAVFEYP 416
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 540 bits (1393), Expect = 0.0
Identities = 172/360 (47%), Positives = 233/360 (64%), Gaps = 18/360 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ E R + + + ++ G VL G+ A E R A +G P + P +NRQCSSGL
Sbjct: 47 IGRFPEPLRADLNLIEEVACGNVLNVGA-GATEHRAACLASGIPYSTPFVALNRQCSSGL 105
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSIS---VVGQVNPKVEIFTQARDCLLPMGIT 136
AV D+A IK G DIG+A G+ESMT N + + + +++ +A+ CL+PMGIT
Sbjct: 106 TAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGIT 165
Query: 137 SENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTIS 196
+ENVA F ++R++QD A S+++A A G F+DEI+P+
Sbjct: 166 NENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLP---------DGSICQ 216
Query: 197 VDDGIRPNTTIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILG 255
D+G RPN T L+ ++PAF KD GTTTAGNASQVSDG VLL +RS+A Q LP+LG
Sbjct: 217 SDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLG 276
Query: 256 VFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLD 315
+ F VGV P +MG+GPA AIP +++ GLQ+ DI++FEINEAFA+Q +YCI KLG+D
Sbjct: 277 RYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGID 336
Query: 316 PEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 375
KVN GGA+ALGHPLG TGAR VAT+L E+K+ + GV+SMCIG+GMGAAA+F +
Sbjct: 337 LNKVNPRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGAAAIFIK 392
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 432 bits (1113), Expect = e-151
Identities = 149/366 (40%), Positives = 210/366 (57%), Gaps = 24/366 (6%)
Query: 20 VQAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMEC-----RMAAFYAGFPETVPLRTVNR 73
+ V+E+ ++++P EV D++ G V E RMA+ P T +TV+R
Sbjct: 38 ISKVLERNSKVDPGEVEDVIWGCVNQTL-----EQGWNIARMASLMTQIPHTSAAQTVSR 92
Query: 74 QCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPM 133
C S + A+ A AI G D+ + G+E M +S++ V+P + A M
Sbjct: 93 LCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMG--HVSMMHGVDPNPHMSLYAAKASGMM 150
Query: 134 GITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRV 193
G+T+E + + G++R++QD AV SH+ A AT GKFKDEIIP+ + D
Sbjct: 151 GLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPM--QGYDEN---GFLK 205
Query: 194 TISVDDGIRPNTTIADLAKLKPAFK-KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLP 252
D+ IRP+TT+ LA LKPAF K GT TAG +SQ++DGA +++M A GL
Sbjct: 206 IFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLE 265
Query: 253 ILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKL 312
L V RS + GVDP++MG GP A A+K AGL + DI+ E+NEAFA+Q + +K L
Sbjct: 266 PLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDL 325
Query: 313 GL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
+ EKVN++GGA+ALGHP G +GAR TLL+ MK+ G FG+ +MCIG G G
Sbjct: 326 KVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGLSTMCIGLGQGI 383
Query: 370 AAVFER 375
A VFER
Sbjct: 384 ATVFER 389
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 431 bits (1110), Expect = e-151
Identities = 150/366 (40%), Positives = 204/366 (55%), Gaps = 24/366 (6%)
Query: 20 VQAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMEC-----RMAAFYAGFPETVPLRTVNR 73
+++++ + L + + DI G V E R AA A P +VP TVNR
Sbjct: 35 MRSLLARNPSLTAATLDDIYWGCVQQTL-----EQGFNIARNAALLAEIPHSVPAVTVNR 89
Query: 74 QCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPM 133
C S +QA+ D A I G + + G+E M +S +P + M
Sbjct: 90 LCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPG--LSRNVAKAAGMM 147
Query: 134 GITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRV 193
G+T+E +++ G++R+ QD A SH RA AAT SG FK EIIP D
Sbjct: 148 GLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPT--GGHDADG---VLK 202
Query: 194 TISVDDGIRPNTTIADLAKLKPAFKK-DGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLP 252
+ D+ IRP TT+ L+ L+PAF GT TAG +S +SDGA A+L+M S A + GL
Sbjct: 203 QFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLK 262
Query: 253 ILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKL 312
RS + VG DPS+MG GP A A+K AGL DI++FE+NEAFA+Q + CIK L
Sbjct: 263 PRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDL 322
Query: 313 GLDP---EKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
GL EK+N+NGGA+ALGHPLG +GAR TL++ M+R+ +FG+ +MCIG G G
Sbjct: 323 GLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERKDA--QFGLATMCIGLGQGI 380
Query: 370 AAVFER 375
A VFER
Sbjct: 381 ATVFER 386
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 420 bits (1083), Expect = e-147
Identities = 147/367 (40%), Positives = 213/367 (58%), Gaps = 21/367 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+Q +++ + P EV ++++G + R AA AGFP+TV T+ RQCSSG+
Sbjct: 37 LQEAVKRGGVEPHEVDEVILGHCIQRTDEANT-ARTAALAAGFPDTVTGYTIQRQCSSGM 95
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVV-----GQVNPKVEIFTQARDCL---- 130
QA+ A I+ G+ ++ +A G+E+M+ +S + GQ EI + L
Sbjct: 96 QAIMSAAMQIQLGVSEVVVAGGVEAMS-SSPYALKQHRWGQRLQHGEIRDTVWEVLEDPI 154
Query: 131 --LPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTG 188
+ MG T+EN+ +++ +TR+EQD A+ SH A A SG F D+I+P+ K +
Sbjct: 155 HHIMMGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKE---RRK 211
Query: 189 VEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQ 248
V S D+ R + T LA LKPAF+KDG+ TAGNAS ++DG+ ++LM A +
Sbjct: 212 E---VVFSKDEHPRADITAEKLAGLKPAFRKDGSVTAGNASGLNDGSAVLVLMSEEKAKE 268
Query: 249 KGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYC 308
KGL L +S GVDP +MGIGPA AI ++ ++D +L EINEAFA+QY+
Sbjct: 269 KGLQPLARIVGYSVAGVDPKIMGIGPAPAIRKGLEKVDWSLEDADLLEINEAFAAQYLAV 328
Query: 309 IKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMG 368
K+L LD EKVNVNG V LGHP+G TGAR +L+ E+KRRG G+ S+C+G G+G
Sbjct: 329 EKELDLDREKVNVNGSGVGLGHPIGCTGARITVSLIHELKRRGL--EKGIASLCVGGGIG 386
Query: 369 AAAVFER 375
A E
Sbjct: 387 VALFIEA 393
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 416 bits (1073), Expect = e-145
Identities = 145/369 (39%), Positives = 214/369 (57%), Gaps = 24/369 (6%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ I++ + P + + ++G VL G + + R A AG P P T+N C SGL
Sbjct: 39 AKEAIKRANITPDMIDESLLGGVLTAGLGQNI-ARQIALGAGIPVEKPAMTINIVCGSGL 97
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQV-------NPKVEIFTQARDCL-- 130
++V+ + I G DI + G E+M+ S +V + + + +D L
Sbjct: 98 RSVSMASQLIALGDADIMLVGGAENMS-MSPYLVPSARYGARMGDAAF-VDSMIKDGLSD 155
Query: 131 ----LPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPK 186
MGIT+EN+A+++ +TR+EQD A+ S +A A A GKF +EI+PV I K
Sbjct: 156 IFNNYHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPV--VIKGRK 213
Query: 187 TGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLA 246
+ D+ I+P TT+ LAKL+PAFKKDGT TAGNAS ++DGA +++M + A
Sbjct: 214 ----GDTVVDKDEYIKPGTTMEKLAKLRPAFKKDGTVTAGNASGINDGAAMLVVMAKEKA 269
Query: 247 VQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYV 306
+ G+ L S+ GVDP +MG GP A A+++A + I+DI+L E NEAFA+Q V
Sbjct: 270 EELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKALEAANMTIEDIDLVEANEAFAAQSV 329
Query: 307 YCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSG 366
I+ L +D KVNVNGGA+A+GHP+G +GAR + TLL EMKRR + G+ ++CIG G
Sbjct: 330 AVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRRDA--KTGLATLCIGGG 387
Query: 367 MGAAAVFER 375
MG + +R
Sbjct: 388 MGTTLIVKR 396
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 415 bits (1069), Expect = e-144
Identities = 148/368 (40%), Positives = 218/368 (59%), Gaps = 21/368 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
V+ I + LN SE+ ++++G VL G + + R A AG P +VP TVN+ C SGL
Sbjct: 37 VKEAISRVGLNLSEIDEVIIGNVLQTGLGQNV-ARQIAINAGIPNSVPSYTVNKLCGSGL 95
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQV------NPKVEIFTQARDCL--- 130
++V A +I +G D+ IA G E+M+ + +V + + D L
Sbjct: 96 KSVQLAAQSITSGENDVVIAGGTENMS-QAPYIVPTARFGSKMGNITMVDSMLTDGLIDA 154
Query: 131 ---LPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKT 187
MGIT+EN+A +F TR+ QD A+ES +A A + +FK+EI+PV ++ +
Sbjct: 155 FNQYHMGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPV--DVLIRRG 212
Query: 188 GVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAV 247
+ TI D+ + T L+KLKPAFKKDGT TAGNAS ++DGA ++LM + A
Sbjct: 213 KI---ETIDKDEYPKLGMTFEGLSKLKPAFKKDGTVTAGNASGINDGAAMLILMSQQKAD 269
Query: 248 QKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVY 307
+ G+ L +S+++ GV+P VMG GP A A+K AGL I+DI+L E NEAFA+Q +
Sbjct: 270 ELGIRPLAKIKSYASAGVEPEVMGTGPIPATRKALKKAGLSINDIDLIEANEAFAAQALA 329
Query: 308 CIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGM 367
+L +D K+NVNGGA+ALGHP+GA+GAR + TL+ EM++R G+ ++CIG G
Sbjct: 330 VKNELQIDSSKLNVNGGAIALGHPIGASGARILVTLIYEMQKRKV--ETGLATLCIGGGQ 387
Query: 368 GAAAVFER 375
G + V R
Sbjct: 388 GISMVVSR 395
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 413 bits (1063), Expect = e-143
Identities = 147/378 (38%), Positives = 215/378 (56%), Gaps = 34/378 (8%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ +++++ + EV D+ G G RMA AGFP V TVNR C SGL
Sbjct: 34 LSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMT--------------------VNSISVVGQVNPK 119
+AVA A AI AG + I +G+ESM+ ++ VNPK
Sbjct: 94 EAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPK 153
Query: 120 VEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVN 179
+ QA MG T+EN+A+ +G+ R+EQD A+ SH++A A G+F+DE++PV
Sbjct: 154 M----QALYGTESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVP 209
Query: 180 TKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVL 239
K ++ + + D+G R +T++ LA L+P F++ GT TAGN+S ++DGA AVL
Sbjct: 210 VK------RGKEEILVEQDEGPRRDTSLEKLAALRPVFREGGTVTAGNSSPLNDGAAAVL 263
Query: 240 LMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 299
L+ A GL L R+ + GV P +MGIGP A A++ AGL D+ L E+NE
Sbjct: 264 LVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELNE 323
Query: 300 AFASQYVYCIKKLGL--DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFG 357
AFA+Q + +++ L + +++N NGGA+ALGHPLGA+GAR + TL+ EM+RR +FG
Sbjct: 324 AFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRRKV--QFG 381
Query: 358 VISMCIGSGMGAAAVFER 375
+ +MCIG G G A V E
Sbjct: 382 LATMCIGVGQGIAVVVEG 399
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 404 bits (1042), Expect = e-140
Identities = 154/367 (41%), Positives = 213/367 (58%), Gaps = 21/367 (5%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ AV+E+ + EV ++++G VL G + R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVLPAGEGQNP-ARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLL-------- 131
+AVA I G I +A G+ESM+ + + D ++
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMS-MAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAF 152
Query: 132 ---PMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTG 188
MG T+ENVA+++ ++R EQD AV S +A AA G+FKDEI+P K G
Sbjct: 153 YGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------G 206
Query: 189 VEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQ 248
+ +T+ D+ IR T+ +AKL+PAF K+GT TAGNAS ++DGA A LLM + A +
Sbjct: 207 RKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASR 266
Query: 249 KGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYC 308
+G+ LG S++ VGVDP VMG GP A A++ AG +I D++L E NEAFA+Q
Sbjct: 267 RGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAV 326
Query: 309 IKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMG 368
K LG DP VNVNGGA+A+GHP+GA+GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 327 NKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGA--RKGLATLCIGGGMG 384
Query: 369 AAAVFER 375
A E
Sbjct: 385 VAMCIES 391
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 401 bits (1032), Expect = e-139
Identities = 132/373 (35%), Positives = 192/373 (51%), Gaps = 38/373 (10%)
Query: 27 TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVA 86
L+ + + D+++G V G R A AG PET +NR C+SGL+AV A
Sbjct: 48 PDLDETLISDMILGVVSPVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAA 107
Query: 87 TAIKAGLYDIGIAAGLESMT---VNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQR 143
+++G D+ +A G+ESM+ + S +P+ T R +P GI ++ +A
Sbjct: 108 QKVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPE----TNYRIGFVPQGIGADLIATL 163
Query: 144 FGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRP 203
G +R++ D A+ S ++AAAA + G F ++PV V + D+ +RP
Sbjct: 164 EGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPV--------RDQNGLVILDHDEHMRP 215
Query: 204 NTTIADLAKLKPAFKKDGTT---------------------TAGNASQVSDGAGAVLLMK 242
+TT+ LAKLK AF G T GN+S + DGA VL+
Sbjct: 216 DTTMEGLAKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGS 275
Query: 243 RSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFA 302
+GL + + G DP +M GP A + AGL IDDI+LFE+NEAFA
Sbjct: 276 EKAGKSQGLTPRARIVATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFA 335
Query: 303 SQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMC 362
S + K L + EK+NVNGGA+A+GHPLGATGA T++ E++RR R +I++C
Sbjct: 336 SVVLKFQKDLNIPDEKLNVNGGAIAMGHPLGATGAMITGTMVDELERRNA--RRALITLC 393
Query: 363 IGSGMGAAAVFER 375
IG GMG A + ER
Sbjct: 394 IGGGMGVATIIER 406
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 390 bits (1004), Expect = e-135
Identities = 147/380 (38%), Positives = 214/380 (56%), Gaps = 45/380 (11%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
++ V+++ + P +V +++ G VLA G + R A+ AG P +VP + C SGL
Sbjct: 38 IKEVLKRATVAPEDVSEVIFGHVLAAGCGQNP-VRQASVGAGIPYSVPAWSCQMICGSGL 96
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQAR-----------D 128
+AV +I G I +A G+E+M+ + P + R D
Sbjct: 97 KAVCLAVQSIGIGDSSIVVAGGMENMS-KA--------PHL---AYLRTGVKIGEMPLTD 144
Query: 129 CLL-----------PMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIP 177
+L MGIT+ENVA+++ V+R++QD AV S R A +G F EI+P
Sbjct: 145 SILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVP 204
Query: 178 VNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTT--TAGNASQVSDGA 235
V + + + D+ R + I ++KLKP F DGT T NAS ++DGA
Sbjct: 205 VLVS------TRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGA 258
Query: 236 GAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLF 295
AV+LMK+S A ++GL L S+S VGV+PS+MGIGP AI AV AG ++D+++F
Sbjct: 259 AAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIF 318
Query: 296 EINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCR 355
EINEAFA+ +K+LGL+PEKVN+ GGA+ALGHPLGA+G R + TLL ++R G+
Sbjct: 319 EINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGR--S 376
Query: 356 FGVISMCIGSGMGAAAVFER 375
GV ++CIG GMG A +R
Sbjct: 377 RGVAALCIGGGMGIAMCVQR 396
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 355 bits (914), Expect = e-121
Identities = 123/367 (33%), Positives = 198/367 (53%), Gaps = 23/367 (6%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+Q IEK + EV + +G VL G +A R A AG P + P T+N+ C+SG+
Sbjct: 40 IQGAIEKAGIPKEEVKEAYMGNVLQGGEGQA-PTRQAVLGAGLPISTPCTTINKVCASGM 98
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPK---VEIF-TQARDCL----- 130
+A+ + ++ G D+ +A G+ESM+ N V+ + + V++ +D L
Sbjct: 99 KAIMMASQSLMCGHQDVMVAGGMESMS-NVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYN 157
Query: 131 -LPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGV 189
+ MG +EN A++ + R EQD A+ S+ R+ AA +GKF +E+IPV
Sbjct: 158 KIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVT------VK 211
Query: 190 EKRVTISVDDGIRPNTTIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQ 248
+ + +D + + KLK F+K+ GT TA NAS ++DGA A++LM A +
Sbjct: 212 GQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKR 271
Query: 249 KGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYC 308
+ L +F+ V+P I P A +K GL+ +DI ++E+NEAF+ +
Sbjct: 272 LNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLAN 331
Query: 309 IKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMG 368
IK L +DP+KVN+NGGAV+LGHP+G +GAR V L +K+ +G+ S+C G G
Sbjct: 332 IKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQG----EYGLASICNGGGGA 387
Query: 369 AAAVFER 375
+A + ++
Sbjct: 388 SAMLIQK 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 3e-07
Identities = 61/384 (15%), Positives = 116/384 (30%), Gaps = 129/384 (33%)
Query: 14 WSLLFSVQ-----AVIEKTRLNPSEV-----------GDIVVGTVLAPGST--------- 48
L+ +Q + P E+ +V +A +
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 49 RAMECRMAAFYAGFP--ETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 106
+A+ F+ G E P S + D +++ G+ + M
Sbjct: 298 KAIT---VLFFIGVRCYEAYP------NTSLPPSILED---SLENN---EGVPS---PM- 338
Query: 107 VNSISVVGQVNPKVEIFTQARDCLLPMG----ITSENVAQRFGVTRQEQDLAAVESH-RR 161
+S+ +V+ + + LP G I+ N A+ V+ Q L + R+
Sbjct: 339 ---LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 162 AAAATASGKFKDEIIPVNTKIVDPKTGVEKR-VTISVDDGIRP-NTTIADLAKLKPAFKK 219
A A + + + IP + + K R + ++ P ++ + L PA
Sbjct: 396 AKAPSGLDQSR---IPFSER----KLKFSNRFLPVAS-----PFHSHL-----LVPA--- 435
Query: 220 DGTTTAGNASQVSD-GAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 278
+ D V + + + P V+ +F G D
Sbjct: 436 -------SDLINKDLVKNNVSFNAKDIQI----P---VYDTFD--GSD------------ 467
Query: 279 PAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGG--AVALGHPLGATG 336
L++ ++ + + V CI +L + E + G P GA+G
Sbjct: 468 --------LRVLSGSI-------SERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASG 511
Query: 337 ARCVATLLSEMKRRGKDCRFGVIS 360
+ L K G R VI
Sbjct: 512 ---LGVLTHRNK-DGTGVR--VIV 529
Score = 42.7 bits (100), Expect = 2e-04
Identities = 55/302 (18%), Positives = 94/302 (31%), Gaps = 110/302 (36%)
Query: 12 NIW---------SLLFSVQAVIEKTRLNPSEVGDIVVGTVL--APGSTRAMECRMAAFYA 60
++W + FS+ ++ NP + T+ R E A +
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIV---INNPVNL------TIHFGGEKGKRIRENYSAMIFE 1694
Query: 61 ----GFPETVPL-RTVNRQCSS-------GL-------Q-AVADVATAI-----KAGLYD 95
G +T + + +N +S GL Q A+ + A GL
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 96 IGIA-AGL------------ESMTVNS-ISVVGQVNPKVEIFTQARDCLLPMGITSENVA 141
AG + M++ S + VV R G+T +
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVV-----------FYR------GMTMQVAV 1797
Query: 142 QRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTG--VEKRVTISVDD 199
R + R + A+ R AA+ F E + + V +TG VE I V+
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAAS------FSQEALQYVVERVGKRTGWLVE----I-VNY 1846
Query: 200 GIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRS 259
+ N AG+ + D VL + +QK + I+ + +S
Sbjct: 1847 NV-ENQQYV---------------AAGDLRAL-DTVTNVL---NFIKLQK-IDIIELQKS 1885
Query: 260 FS 261
S
Sbjct: 1886 LS 1887
Score = 41.2 bits (96), Expect = 5e-04
Identities = 68/427 (15%), Positives = 125/427 (29%), Gaps = 153/427 (35%)
Query: 36 DI--VVGTVLAPGSTRAMECR--MAAFYAGFPETVPLRTVNRQCSSGL-QAVADVATAIK 90
DI + +L T ++ + + + + R +++ +S L +AV +
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITA--RIMAKRPFDKKSNSALFRAVGEG----N 153
Query: 91 AGLYDI-GIAAGLESMTVNSISVVGQVNPKV------EIFTQARDCLLPMGITSENVAQR 143
A L I G GQ N +++ T +
Sbjct: 154 AQLVAIFG----------------GQGNTDDYFEELRDLYQ-----------TYHVLVGD 186
Query: 144 FGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKT--GVE--KRVTISVDD 199
+ + L+ + K + + + + +P + + IS
Sbjct: 187 L-IKFSAETLS-----ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC-- 238
Query: 200 GIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGA---GAVLLMKRSLA---------- 246
P + LA K G T G GA L+ ++A
Sbjct: 239 ---PLIGVIQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 247 -VQKGLPIL---GVFRS---FSAVGVDPSVM------GIG---PAVAIPAAVKSAGLQ-- 288
V+K + +L GV R + + PS++ G P ++I + + +Q
Sbjct: 295 SVRKAITVLFFIGV-RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDY 352
Query: 289 IDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGA---VALGHPLGATG-------AR 338
++ N + A + V + L VNG V+ G P G A+
Sbjct: 353 VNKTN----SHLPAGKQVE----ISL------VNGAKNLVVS-GPPQSLYGLNLTLRKAK 397
Query: 339 CVATL------LSEMKRRGKDCRFGVISMCIGSGMGAAAVFERGDCVDELCNARMVPTHT 392
+ L SE K + RF ++ P H+
Sbjct: 398 APSGLDQSRIPFSERKLKF-SNRFLPVA---------------------------SPFHS 429
Query: 393 HLSKDAK 399
HL A
Sbjct: 430 HLLVPAS 436
Score = 38.9 bits (90), Expect = 0.003
Identities = 59/399 (14%), Positives = 113/399 (28%), Gaps = 136/399 (34%)
Query: 99 AAGLESMTVN------SISVVGQVNPKVEIF--TQARDC---LLPMGITSENVAQ----- 142
A +T++ + V P F +Q ++ +LP +E A
Sbjct: 3 AYSTRPLTLSHGSLEHVLLV-----PTASFFIASQLQEQFNKILP--EPTEGFAADDEPT 55
Query: 143 -------RF-G-VTRQEQDLAAVESHRRAAAATASGKFKDEIIPVN-------TKIVDPK 186
+F G V+ + +F++ + N + +
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKV--GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 187 TGVEKRVTI------SVDDGIRPNTTIADLAKLKPAFKKDGTTTA-----GN-------- 227
T + K + + RP ++ A + + + A GN
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 228 -------ASQVSD---GAGAVL--LMKRSLAVQK----GLPILGVFRSFSAVGVDPSVMG 271
V D + L L++ +L +K GL IL + S D +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDYLL 232
Query: 272 IGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKV--NVNGGAVALG 329
P ++ P I + A V K LG P ++ + G A G
Sbjct: 233 SIP-ISCPL-----------IGVI----QLAHYVVTA-KLLGFTPGELRSYLKG---ATG 272
Query: 330 HPLGATGARCVA----------------TLLSEMKRRGKDCRFGVISM-------CIGSG 366
H G A +A T+L + R + + S+ + +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA-YPNTSLPPSILEDSLENN 331
Query: 367 MGAA----AVFERG---DCVDEL---CNARMVPTHTHLS 395
G ++ + V + N+ +P +
Sbjct: 332 EGVPSPMLSI--SNLTQEQVQDYVNKTNSH-LPAGKQVE 367
Score = 38.1 bits (88), Expect = 0.006
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 39/103 (37%)
Query: 309 IKKLGLDPEKVNVNGGAVALGHPLG-----ATGARCVATLLS-E-----MKRRGKDCRFG 357
+K GL P A GH LG A +A ++S E + RG +
Sbjct: 1747 LKSKGLIPADA-----TFA-GHSLGEYAALA----SLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 358 V---------ISMC------IGSGMGAAAVFERGDCVDELCNA 385
V M + + A+ V+ +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQY---VVERVGKR 1836
Score = 31.6 bits (71), Expect = 0.66
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 12/26 (46%)
Query: 364 GS---GMG---------AAAVFERGD 377
GS GMG A V+ R D
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRAD 1650
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 56/405 (13%), Positives = 113/405 (27%), Gaps = 133/405 (32%)
Query: 18 FSVQAVIEKTR--LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQC 75
F + V + + L+ E+ I++ + + LR
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIM--------------------SKDAVSGTLRLFWTLL 72
Query: 76 SSGLQAVAD-VATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMG 134
S + V V ++ Y + + +++ Q + ++ + RD L
Sbjct: 73 SKQEEMVQKFVEEVLRIN-YKF-LMSPIKTEQR-------QPSMMTRMYIEQRDRL---- 119
Query: 135 ITSENVAQRFG---VTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEK 191
N Q F V+R + R+A E+ P ++D G K
Sbjct: 120 ---YNDNQVFAKYNVSRLQP----YLKLRQALL---------ELRPAKNVLIDGVLGSGK 163
Query: 192 RV-TISV----------DDGI---------RPNTTIADLAKLKPAFKKDGTTTAGNASQV 231
+ V D I P T + L KL + T+ + ++S +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 232 SDGAGAVLLMKRSLAVQKGLP----IL------GVFRSFSAVGV-------DPSVMGIGP 274
++ R L K +L + +F+ + V
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQV----- 277
Query: 275 AVAIPAAVKSAGLQIDDINLFEINEA---FASQYVYC-IKKLGLDPEKVNVNGGAVALGH 330
+ AA + +E +Y+ C + L P + V +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDL---PRE-------VLTTN 326
Query: 331 PLGATGARCVATLLSEMKRRGKDCRFG------------VISMCI 363
P ++++E R G + +I +
Sbjct: 327 PR-------RLSIIAESIRDGL-ATWDNWKHVNCDKLTTIIESSL 363
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 46.4 bits (110), Expect = 1e-05
Identities = 56/407 (13%), Positives = 102/407 (25%), Gaps = 96/407 (23%)
Query: 14 WSLLFSVQAVI---------EKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAG--- 61
+ L+ V+A I ++ SEVG G+ + G A+ +
Sbjct: 1015 FVLVSVVEAFIASGITDPYEMYKYVHVSEVG-NCSGSGM--GGVSALRGMFKDRFKDEPV 1071
Query: 62 ----FPETV-----------------PLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAA 100
E+ P++T C++ +++V I +G I I
Sbjct: 1072 QNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVG 1131
Query: 101 GLESMTVNSISVVGQVNPKVEIFTQA-----RDCLLPMGITSENVAQR-FGVTR------ 148
G + F G T R TR
Sbjct: 1132 GYDDFQ--EEGSFE--------FGNMKATSNTLEEFEHGRTPAE-MSRPATTTRNGFMEA 1180
Query: 149 --------QEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 200
+ DLA + D+I + P G+
Sbjct: 1181 QGAGIQIIMQADLALKMGVPIYGIVAMAATATDKI---GRSVPAPGKGILTTAREHHSSV 1237
Query: 201 IRPNTTIADLAKLKPAFKKDGTTTAGNASQV--------SDGAG--AVLLMKRSLAVQKG 250
+ + + + ++ +++ + L++R+ +
Sbjct: 1238 KYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNE 1297
Query: 251 LPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLF----------EINEA 300
+ A+ + GL IDD+ + + NE+
Sbjct: 1298 AESQLRAAQQQWGNDFYK--RDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNES 1355
Query: 301 FASQYVYCIKKLGLDP-EKVNVNGGAVALGHPLGATGA-RCVATLLS 345
+ K LG V GHP GA GA L
Sbjct: 1356 ATINEMM--KHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQI 1400
Score = 43.3 bits (102), Expect = 1e-04
Identities = 19/156 (12%), Positives = 48/156 (30%), Gaps = 27/156 (17%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-------VDPSVMGIGPAVAIPAAVKS 284
+ GAG ++M+ LA++ G+PI G+ + P + A ++VK
Sbjct: 1180 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1239
Query: 285 AGLQID--------DINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATG 336
A ++ +I + ++ + + +
Sbjct: 1240 ASPNLNMKYRKRQLVTREAQIKDWVENELEA-----------LKLEAEEIPSEDQNEFLL 1288
Query: 337 ARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAV 372
R + +E + + + + + A +
Sbjct: 1289 ER-TREIHNEAESQLRAAQQQWGNDFYKRDPRIAPL 1323
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 41.8 bits (98), Expect = 3e-04
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 23/156 (14%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFS----AVGVDPSVMGIGPAVAIPAAVKSAGL 287
S G G ++M LA++ G+PI G+ S +G G G +
Sbjct: 1354 SQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPS 1413
Query: 288 QIDDIN---------LFEINEAFASQYVYCIKKLGLDPEK---VNVNGGAVALGHPLGAT 335
+ DI +I + S+Y L L E +
Sbjct: 1414 PLLDIKYRRRQLELRRQQIKQWKESEY------LYLQEEVAAIKSQRSEEDGPFDETAYL 1467
Query: 336 GARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAA 371
R + E +R+ + + + A
Sbjct: 1468 RER-TEHIEREARRQEAEAQTSFGNEFWRRDSRIAP 1502
Score = 30.7 bits (69), Expect = 1.2
Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 273 GPAVAIPAAVKSAGLQIDDIN----------LFEINEAFASQYVYCIKKLGLDP-EKVNV 321
+ A+ + GL IDD+ + NE+ K LG V
Sbjct: 1498 SRIAPLRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQL--KHLGRTKGNAVLG 1555
Query: 322 NGGAVALGHPLGATGA 337
GHP GA GA
Sbjct: 1556 IFQKYLTGHPKGAAGA 1571
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 39.9 bits (94), Expect = 0.001
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 19/83 (22%)
Query: 277 AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNVNGGAVALG 329
A A++ AG I+DI LGL E+ + G
Sbjct: 243 AKTQALEDAGTAIEDIAHAVIPVSRRGTGHELH-------DLLGLPDERTSWA-----YG 290
Query: 330 HPLGATGARCVATLLSEMKRRGK 352
G GA L+ +
Sbjct: 291 RTTGHVGAGDQYAGLAHLVENAL 313
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 38.4 bits (90), Expect = 0.003
Identities = 37/169 (21%), Positives = 57/169 (33%), Gaps = 46/169 (27%)
Query: 233 DGAGAVLLMKRSLAVQKGLPILGVFRS------FSAVGVDPSVMGIGPAV---------- 276
GA A+++ + L GV RS +D V +
Sbjct: 192 CGAAAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTD-TRLLLIEGIKLAQK 250
Query: 277 AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNVNGGAVALG 329
AA + G +++++ F AF K G+DP KV G
Sbjct: 251 TFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFV-------KSFGIDPAKVMTI-----FG 298
Query: 330 HPLGATGARCVATLLSEMKRRGK----DCRFGVISMCIGSGM--GAAAV 372
G G V +LS++K G+ D + + IGSG+ A V
Sbjct: 299 E-HGNIGPASVPIVLSKLKELGRLKKGDR---IALLGIGSGLNCSMAEV 343
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 37.9 bits (89), Expect = 0.004
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
DGAG ++L + A ++G I F P G G A+A+ A++ AG
Sbjct: 247 GDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAG 306
Query: 287 L---QIDDIN-------LFEINEAFASQYVYCIKKL-GLDPEKVNVNGGAVALGHPLGAT 335
+ QI +N + EA A +K + G +V V+ GH LGA
Sbjct: 307 IEASQIGYVNAHGTSTPAGDKAEAQA------VKTIFGEAASRVLVSSTKSMTGHLLGAA 360
Query: 336 GA-RCVATLLS 345
GA + ++L+
Sbjct: 361 GAVESIYSILA 371
Score = 29.1 bits (66), Expect = 2.8
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
+SG+ + A I G D+ +A G E + V G
Sbjct: 178 ATSGVHNIGHAARIIAYGDADVMVAGGAEK-ASTPLGVGG 216
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 37.9 bits (89), Expect = 0.005
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 23/131 (17%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
+G+G ++L + A+ +G I G ++ P G G AI A+K +G
Sbjct: 236 GEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSG 295
Query: 287 L---QIDDIN-------LFEINEAFASQYVYCIKKL-GLDPEKVNVNGGAVALGHPLGAT 335
L + IN ++ E A IK+ G + V+ GH LG +
Sbjct: 296 LKPEMVSYINAHGTSTPANDVTETRA------IKQALGNHAYNIAVSSTKSMTGHLLGGS 349
Query: 336 GA-RCVATLLS 345
G VAT+++
Sbjct: 350 GGIEAVATVMA 360
Score = 29.0 bits (66), Expect = 2.5
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
C++G A+ D ++ G I G E+ + +S G
Sbjct: 167 CAAGSNAIGDAFRLVQNGYAKAMICGGTEA-AITPLSYAG 205
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 37.5 bits (88), Expect = 0.006
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 23/131 (17%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
+GAG ++L A ++G I F +P G G A+A+ A+K AG
Sbjct: 230 GEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAG 289
Query: 287 L---QIDDIN-------LFEINEAFASQYVYCIKKL-GLDPEKVNVNGGAVALGHPLGAT 335
+ Q+ IN + + E A IK++ G +++ V+ +GH LGA
Sbjct: 290 IAPEQVGYINAHGTSTPVGDRAEVLA------IKRVFGDHAKRLMVSSTKSMIGHLLGAA 343
Query: 336 GA-RCVATLLS 345
GA +AT+ +
Sbjct: 344 GAVEAIATVQA 354
Score = 29.0 bits (66), Expect = 2.6
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
C++G A+ I+ G D+ +A G E+ + +++
Sbjct: 161 CATGADALGSALRMIQLGEADLVLAGGTEA-AITPMAIGA 199
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 37.5 bits (88), Expect = 0.007
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 23/131 (17%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
+GAG +++ A +G I + G P+ G G + A+ AA+ AG
Sbjct: 256 GEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAG 315
Query: 287 L---QIDDIN-------LFEINEAFASQYVYCIKKL-GLDPEKVNVNGGAVALGHPLGAT 335
+ + +N + ++NE A IK G + + V+ GH LGAT
Sbjct: 316 IEPKDVQYLNAHGTSTPVGDLNEVKA------IKNTFGEAAKHLKVSSTKSMTGHLLGAT 369
Query: 336 GA-RCVATLLS 345
G + + LS
Sbjct: 370 GGIEAIFSALS 380
Score = 29.5 bits (67), Expect = 2.1
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
C++G ++ + ++ G D I G E+ + +++ G
Sbjct: 188 CATGTNSIGEAFKIVQRGDADAMITGGTEA-PITHMAIAG 226
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 37.1 bits (87), Expect = 0.009
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
+GAG V+L + A +G I + A G P+ G G A A+ A+ AG
Sbjct: 232 GEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAG 291
Query: 287 L---QIDDIN-------LFEINEAFASQYVYCIKKL-GLDPEKVNVNGGAVALGHPLGAT 335
L ++D IN + E A IK + G +K+ ++ GH LGA+
Sbjct: 292 LTPDKVDYINAHGTSTPYNDEYETQA------IKTVFGEHAKKLAISSTKSMTGHTLGAS 345
Query: 336 GA-RCVATLLS 345
G + LL+
Sbjct: 346 GGIEAIFALLT 356
Score = 29.4 bits (67), Expect = 2.3
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
C++ ++ D I+ G D I G E+ + +S+ G
Sbjct: 164 CATATNSIGDAFKVIERGDADAMITGGAEA-PITKMSLAG 202
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.017
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 21/47 (44%)
Query: 47 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGL 93
+ + ++ + YA ++ P A AIKA +
Sbjct: 21 ALKKLQASLK-LYA--DDSAP------------------ALAIKATM 46
Score = 30.7 bits (68), Expect = 0.48
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 15/43 (34%)
Query: 242 KRSLAVQKGLPI-LGVFRSFSAVGVDPSVMGIGPAVAIPAAVK 283
K++L K L L ++ SA PA+AI A ++
Sbjct: 19 KQAL---KKLQASLKLYADDSA-----------PALAIKATME 47
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 36.0 bits (84), Expect = 0.019
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 25/132 (18%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD------PSVMGIGPAVAIPAAVKSA 285
+GA ++L + AVQ+ I + G D P G G + AA+K A
Sbjct: 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSG-DAGHITAPDPEGEGALRCMAAALKDA 314
Query: 286 GL---QIDDIN-------LFEINEAFASQYVYCIKKL-GLDPEKVNVNGGAVALGHPLGA 334
G+ +I IN L + E A IK L + V+ A GH LGA
Sbjct: 315 GVQPEEISYINAHATSTPLGDAAENKA------IKHLFKDHAYALAVSSTKGATGHLLGA 368
Query: 335 TGA-RCVATLLS 345
GA T L+
Sbjct: 369 AGAVEAAFTTLA 380
Score = 29.0 bits (66), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
C++G AV D I G D+ +A G +S ++ +S+ G
Sbjct: 188 CTTGAHAVGDSFRFIAHGDADVMVAGGTDS-CISPLSLAG 226
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 35.6 bits (83), Expect = 0.023
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 24/131 (18%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD------PSVMGIGPAVAIPAAVKSA 285
+GAG V+L + A+ +G I + G D P+ G G + AA+K A
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSG-DAFHITAPTESGEGAQRCMVAALKRA 306
Query: 286 GL---QIDDIN------LFEINEAFASQYVYCIKKL-GLDPEKVNVNGGAVALGHPLGAT 335
G+ +ID IN + + E A ++++ G K++++ ++GH LGA
Sbjct: 307 GIVPDEIDYINAHGTSTMADTIELGA------VERVVGEAAAKISMSSTKSSIGHLLGAA 360
Query: 336 GA-RCVATLLS 345
GA V + L+
Sbjct: 361 GAAEAVFSTLA 371
Score = 29.8 bits (68), Expect = 1.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
C++G A+ D A I G D+ +A G ES V+ IS+ G
Sbjct: 178 CATGTHAIGDAARLIAFGDADVMVAGGTES-PVSRISLAG 216
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 35.3 bits (82), Expect = 0.038
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI----GPA--VAIPAAVKSA 285
S+G VLL + S A + G +L V R SA+ D + G+ GPA I A++S
Sbjct: 241 SEGVTLVLLERLSEARRNGHEVLAVVRG-SALNQDGASNGLSAPSGPAQRRVIRQALESC 299
Query: 286 GLQIDDINLFE 296
GL+ D++ E
Sbjct: 300 GLEPGDVDAVE 310
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 35.3 bits (82), Expect = 0.038
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI----GPA--VAIPAAVKSA 285
++GAG ++L + S A ++G P+L V R SAV D + G+ GPA I A+++A
Sbjct: 263 AEGAGVLVLQRLSAARREGRPVLAVLRG-SAVNQDGASNGLTAPSGPAQQRVIRRALENA 321
Query: 286 GLQIDDINLFE 296
G++ D++ E
Sbjct: 322 GVRAGDVDYVE 332
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 34.8 bits (81), Expect = 0.043
Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 41/144 (28%)
Query: 233 DGAGAVLLMKRSLAVQKGLPIL-------GVFRSFSAVGVDPSVMGIGPAV--------- 276
DGAGAV++ + IL G + G +
Sbjct: 158 DGAGAVVVT----RSEDKSDILATRMYAEGSLEELLHADNCGYIRMKGRELFKVAVRSME 213
Query: 277 -AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNVNGGAVAL 328
++ AG++ ++++L I A A +KL + EKV VN
Sbjct: 214 EVCREVLEKAGVKPEEVSLVIPHQANVRIINALA-------EKLNIPKEKVFVN------ 260
Query: 329 GHPLGATGARCVATLLSEMKRRGK 352
G T A + L E + GK
Sbjct: 261 IQKYGNTSAASIPIALHEAIKEGK 284
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 34.4 bits (80), Expect = 0.054
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 26/131 (19%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
+G+G ++L A ++G IL + P G G AI A++ A
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 287 L---QIDDIN-------LFEINEAFASQYVYCIKK-LGLDPEKVNVNGGAVALGHPLGAT 335
+ Q+ +N E E+ A I LG ++V V+ GH LGA
Sbjct: 311 ISPEQVAYVNAHGTSTPANEKGESGA------IVAVLG---KEVPVSSTKSFTGHLLGAA 361
Query: 336 GA-RCVATLLS 345
GA + T+ +
Sbjct: 362 GAVEAIVTIEA 372
Score = 29.0 bits (66), Expect = 3.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
CSS A+ D +IK G D+ + G E+ ++ ++ G
Sbjct: 183 CSSSNDAIGDAFRSIKFGFQDVMLVGGTEA-SITPFAIAG 221
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 34.9 bits (80), Expect = 0.059
Identities = 19/145 (13%), Positives = 47/145 (32%), Gaps = 5/145 (3%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFS----AVGVDPSVMGIGPAVAIPAAVKSAGL 287
+ GAG ++M+ LA++ G+PI G+ + +G G G S
Sbjct: 1379 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1438
Query: 288 QIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEM 347
++N+ ++ + + E + + + R + +E
Sbjct: 1439 ASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLER-TREIHNEA 1497
Query: 348 KRRGKDCRFGVISMCIGSGMGAAAV 372
+ + + + + A +
Sbjct: 1498 ESQLRAAQQQWGNDFYKRDPRIAPL 1522
Score = 28.4 bits (63), Expect = 5.3
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 271 GIGPAVAIPAAVKSAGLQIDDINLF----------EINEAFASQYVYCIKKLGLDP-EKV 319
+ A+ + GL IDD+ + + NE+ + K LG V
Sbjct: 1515 RDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMM--KHLGRSEGNPV 1572
Query: 320 NVNGGAVALGHPLGATGA 337
GHP GA GA
Sbjct: 1573 IGVFQKFLTGHPKGAAGA 1590
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 34.0 bits (79), Expect = 0.068
Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 54/151 (35%)
Query: 233 DGAGAVLLMKRS-------------------LAVQKGLPIL-----GVFRSFSAVGVDPS 268
DGAGAV++ + S L + K L VF+ AV +
Sbjct: 159 DGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFK--FAVRIMGD 216
Query: 269 VMGIGPAVAIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNV 321
V+ A L DDI+LF I E+ ++LG+ +K++V
Sbjct: 217 A--------STRVVEKANLTSDDIDLFIPHQANIRIMESAR-------ERLGISKDKMSV 261
Query: 322 NGGAVALGHPLGATGARCVATLLSEMKRRGK 352
+ + G T A + + + + GK
Sbjct: 262 S------VNKYGNTSAASIPLSIDQELKNGK 286
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 33.6 bits (78), Expect = 0.096
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 23/130 (17%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
+G +L+ A +G IL S V P G AI A++ AG
Sbjct: 257 GEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAG 316
Query: 287 L---QIDDIN-------LFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATG 336
L ID +N + ++ E A I L + V ALGH +GA G
Sbjct: 317 LAPGDIDHVNAHATGTQVGDLAEGRA------INNA-LGGNRPAVYAPKSALGHSVGAVG 369
Query: 337 A-RCVATLLS 345
A + T+L+
Sbjct: 370 AVESILTVLA 379
Score = 30.6 bits (70), Expect = 1.1
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCL 130
C+SG +A+A I G D I G+E+ + ++ + G F Q R +
Sbjct: 187 CASGAEAIARAWQQIVLGEADAAICGGVET-RIEAVPIAG--------FAQMRIVM 233
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 33.7 bits (78), Expect = 0.10
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 22/130 (16%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
+GA V++ A+ +G + + G G A+ A++
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 287 L---QIDDIN-------LFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATG 336
+ Q+D +N + + E A +K + ++ A GH LGA G
Sbjct: 323 VAPEQVDYVNAHATSTPVGDAGEIEA------LKTVFGVGAGPAISSTKSATGHLLGAAG 376
Query: 337 A-RCVATLLS 345
A ++L+
Sbjct: 377 AIEAAFSILA 386
Score = 29.8 bits (68), Expect = 1.4
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
C++ +QA+ D I+ G D+ +A G E+ + +S+ G
Sbjct: 193 CAASVQAIGDAMRMIRTGEADVVLAGGAEA-AFDKVSLGG 231
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 33.3 bits (77), Expect = 0.14
Identities = 32/138 (23%), Positives = 47/138 (34%), Gaps = 38/138 (27%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAV----------AIPAA 281
SDG A + I + + + G P V GPAV A
Sbjct: 191 SDGEQADAIR---------QDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRA 241
Query: 282 VKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGA 334
+ +AG++ D I++F INE K L L P+ V N G
Sbjct: 242 MDAAGVRPDQIDVFVPHQANSRINELLV-------KNLQLRPDAVVAND-----IEHTGN 289
Query: 335 TGARCVATLLSEMKRRGK 352
T A + ++E+ G
Sbjct: 290 TSAASIPLAMAELLTTGA 307
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 32.8 bits (76), Expect = 0.19
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 23/131 (17%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
++GA +L A+ +G I ++ G A I A+ +
Sbjct: 238 AEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESR 297
Query: 287 L---QIDDIN-------LFEINEAFASQYVYCIKK-LGLDPEKVNVNGGAVALGHPLGAT 335
ID IN + +E A K+ LG + V+ +GH LGA
Sbjct: 298 TDATDIDYINAHGSGTRQNDRHETAA------YKRALGEHARRTPVSSIKSMVGHSLGAI 351
Query: 336 GA-RCVATLLS 345
G+ A +L+
Sbjct: 352 GSLEIAACVLA 362
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 32.5 bits (75), Expect = 0.21
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
+ GAG ++L A+ +G I G + A V PS G G + A+ +
Sbjct: 251 AGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAPS--GEGAIRCMKMALSTVT 308
Query: 287 LQIDDIN-------LFEINEAFASQYVYCIKKL-GLDPEKVNVNGGAVALGHPLGATGAR 338
+ID IN + E A I+++ G + GH LGATG +
Sbjct: 309 SKIDYINPHATSTPAGDAPEIEA------IRQIFGAGDVCPPIAATKSLTGHSLGATGVQ 362
Query: 339 -CVATLLS 345
+ +LL
Sbjct: 363 EAIYSLLM 370
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 32.1 bits (74), Expect = 0.32
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 47/129 (36%)
Query: 233 DGAGAVLLMKRSLAVQKGL------------PILGVFRSFSAVGVDPSVMGI-------- 272
DGAGAV++ +++ GL +L SA +
Sbjct: 184 DGAGAVVV-SAGESLEDGLLDLRLGADGNYFDLLMTAAPGSASPTFLDENVLREGGGEFL 242
Query: 273 --GPAV----------AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLG 313
G + + + L +DDI+ I +A ++LG
Sbjct: 243 MRGRPMFEHASQTLVRIAGEMLAAHELTLDDIDHVICHQPNLRILDAVQ-------EQLG 295
Query: 314 LDPEKVNVN 322
+ K V
Sbjct: 296 IPQHKFAVT 304
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 32.1 bits (74), Expect = 0.35
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 26/131 (19%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
+ +L+ A +G L V P+ G+ A+ +++ AG
Sbjct: 240 GEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAG 299
Query: 287 L---QIDDIN-------LFEINEAFASQYVYCIKK-LGLDPEKVNVNGGAVALGHPLGAT 335
L ID +N + + EA A I+ ++ V ALGH +GA
Sbjct: 300 LSPADIDHVNAHGTATPIGDAAEANA------IRVAGC---DQAAVYAPKSALGHSIGAV 350
Query: 336 GA-RCVATLLS 345
GA V T+L+
Sbjct: 351 GALESVLTVLT 361
Score = 29.8 bits (68), Expect = 1.8
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
CSSG +A+A I G D+ + G+E + ++ +
Sbjct: 171 CSSGSEAIAHAWRQIVMGDADVAVCGGVEG-PIEALPIAA 209
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 31.8 bits (72), Expect = 0.40
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 23/105 (21%)
Query: 136 TSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVT- 194
SE +T E D V + A A+G ++ E+ V K+VD + T
Sbjct: 215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGV--KVVDGRKEASSLFTR 271
Query: 195 ----------ISVD-DGIR--------PNTTIADLAKLKPAFKKD 220
++ D P T+ D+ + F ++
Sbjct: 272 YIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN 316
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 31.8 bits (73), Expect = 0.41
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 27/111 (24%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI---GPAV----------AI 278
+DG GA L+ ++ ++ A G + + G V A
Sbjct: 213 TDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAEVMAFSLAEVPRAA 272
Query: 279 PAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNVN 322
+ AG ++I+ F + +A KK+ + K V
Sbjct: 273 DRLLALAGEPRENIDCFVLHQANRFMLDALR-------KKMKIPEHKFPVL 316
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 31.5 bits (71), Expect = 0.49
Identities = 8/89 (8%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 20 VQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGL 79
+ I++ + S + ++ + + +A P + C +G
Sbjct: 133 AEKAIQEWGQSKSGITHLIFCST-TTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGG 191
Query: 80 QAVADVATAIKAGLYDIGIAAGLESMTVN 108
+ + + E+ V
Sbjct: 192 TVLRMAKDLAENNRGARVLVICSETTAVT 220
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2,
protein struct initiative, northeast structural genomics
consortium, NESG; 1.63A {Escherichia coli} SCOP:
a.35.1.3 PDB: 2icp_A
Length = 94
Score = 29.6 bits (67), Expect = 0.53
Identities = 2/23 (8%), Positives = 9/23 (39%)
Query: 127 RDCLLPMGITSENVAQRFGVTRQ 149
++ L + ++ A+ +
Sbjct: 14 QESLDELNVSLREFARAMEIAPS 36
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 31.3 bits (72), Expect = 0.53
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 277 AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNVN 322
+ + + L ++ I A A KKLG+ + V V
Sbjct: 223 IVDETLAANNLDRSQLDWLVPHQANLRIISATA-------KKLGMSMDNVVVT 268
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 31.3 bits (72), Expect = 0.56
Identities = 30/153 (19%), Positives = 45/153 (29%), Gaps = 46/153 (30%)
Query: 233 DGAGAVLLMKRSLAVQKGL------------PILGVFRSFSAVGVDPSVMGI----GPAV 276
DGAGAV+L + L +L A G AV
Sbjct: 159 DGAGAVVLRAGDAEEEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAV 218
Query: 277 ----------AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKV 319
++ + G Q D++ I A A +L L E+V
Sbjct: 219 FGQAVTQMSDSVRRVLDRVGWQASDLHHLVPHQANTRILAAVA-------DQLDLPVERV 271
Query: 320 NVNGGAVALGHPLGATGARCVATLLSEMKRRGK 352
N + +G T A + L+ R+G
Sbjct: 272 VSN-----IAE-VGNTVAASIPLALAHGLRQGI 298
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 31.3 bits (72), Expect = 0.58
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 21/87 (24%)
Query: 271 GIGPAVAIPAAVKSAGL---QIDDIN-------LFEINEAFASQYVYCIKKL-GLDPEKV 319
A A+ A++ A L I +N ++ E+ A + G E++
Sbjct: 278 ASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQA------TARTFG---ERM 328
Query: 320 NVNGGAVALGHPLGATGA-RCVATLLS 345
++ +GH LGA GA T+
Sbjct: 329 PISSLKSYVGHTLGACGALEAWWTIEM 355
Score = 27.8 bits (63), Expect = 7.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLES 104
C+SG QA+ I G + +A G E
Sbjct: 168 CASGSQAIGYAYENIAMGKQTLMLAGGAEE 197
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 30.9 bits (71), Expect = 0.58
Identities = 28/121 (23%), Positives = 40/121 (33%), Gaps = 38/121 (31%)
Query: 233 DGAGAVLLMKRS-----LAVQ-----KGLPIL----GVFRSFSAVGVDPSVMGIGPAV-- 276
DG GA ++ K + G L R + + G V
Sbjct: 157 DGGGAAVVGKVREGYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFK 216
Query: 277 --------AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNV 321
A A++ AGL +DI LF I +A ++LGL E+V V
Sbjct: 217 FAVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLRIIDAAR-------ERLGLPWERVAV 269
Query: 322 N 322
N
Sbjct: 270 N 270
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 30.9 bits (71), Expect = 0.71
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 14/53 (26%)
Query: 277 AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNVN 322
+ + + L D++ I A A KKL +D +V V
Sbjct: 229 VVEETLLANNLDKKDLDWLVPHQANLRIITATA-------KKLEMDMSQVVVT 274
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 31.0 bits (71), Expect = 0.72
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 27/135 (20%)
Query: 231 VSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD------PSVMGIGPAVAIPAAVKS 284
+ +G+G ++L + A ++G I + G D P G G +A+ A++
Sbjct: 248 IGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSG-DAHHITQPPEDGKGAVLAMTRALRQ 306
Query: 285 AGL---QIDDIN-------LFEINEAFASQYVYCIKKL---GLDPEKVNVNGGAVALGHP 331
+GL QID +N + + EA A IK + + + A GH
Sbjct: 307 SGLCPNQIDYVNAHATSTPIGDAVEARA------IKTVFSEHATSGTLAFSSTKGATGHL 360
Query: 332 LGATGA-RCVATLLS 345
LGA GA + ++L+
Sbjct: 361 LGAAGAVEAIFSILA 375
Score = 29.9 bits (68), Expect = 1.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 75 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 114
C++G ++ D I+ G D+ +A G ES +++++SV G
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTES-SIDALSVAG 217
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 30.8 bits (70), Expect = 0.73
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 19 SVQAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSG 78
+VQ+ + K L ++ + G +L T R +P + CS+
Sbjct: 62 AVQSALSKQNLKKEDIDIFLAGDLLNQNVTANYVARHLK--------IPFLCLFGACSTS 113
Query: 79 LQAVADVATAIKAGLYDIGIAAG 101
++++A + I G +AA
Sbjct: 114 MESIAISSALIDGGFAKRALAAT 136
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 30.6 bits (70), Expect = 0.78
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 14/53 (26%)
Query: 277 AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNVN 322
A++ A L + I+ I ++ +KLGL E++ V
Sbjct: 239 VAVEALEKANLSAEQIDWLIPHQANIRIMQSTC-------RKLGLPQERMIVT 284
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 30.6 bits (70), Expect = 0.81
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 14/53 (26%)
Query: 277 AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNVN 322
+ + AG D + F + + A KK GL E+V VN
Sbjct: 249 LVSRTLDIAGRDKDSYDAFLFHQANLFMLKHLA-------KKAGLPAERVPVN 294
>3cec_A Putative antidote protein of plasmid maintenance; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE; 1.60A {Nostoc
punctiforme}
Length = 104
Score = 28.8 bits (65), Expect = 0.92
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 127 RDCLLPMGITSENVAQRFGVTRQ 149
D L + I + N A+ GV+ Q
Sbjct: 24 ADILDDLDINTANFAEILGVSNQ 46
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 30.5 bits (70), Expect = 1.1
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 18/86 (20%)
Query: 271 GIGPAVAIPAAVKSAGL---QIDDIN-------LFEINEAFASQYVYCIKKLGLDPEKVN 320
G AI A+ AG +D + + EA A I ++ E V
Sbjct: 278 PAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARA------IGRV-FGREGVP 330
Query: 321 VNGGAVALGHPLGATGA-RCVATLLS 345
V G G V L+S
Sbjct: 331 VTVPKTTTGRLYSGGGPLDVVTALMS 356
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 30.2 bits (69), Expect = 1.3
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 21/102 (20%)
Query: 275 AVAIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKVNVNGGAVA 327
A+ + + + + ++ I + A +K + EK N
Sbjct: 223 AIKDVSQNILSLVTDETVDYLLLHQANVRIIDKIA-------RKTKISREKFLTN----- 270
Query: 328 LGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGA 369
G T A + LL E G G + +G G
Sbjct: 271 -MDKYGNTSAASIPILLDEAVENGT-LILGSQQRVVLTGFGG 310
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 29.8 bits (68), Expect = 1.5
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 25/86 (29%)
Query: 277 AIPAAVKSAGLQIDDINLF-------EINEAFASQYVYCIKKLGLDPEKV---NVNGGAV 326
A A++ AGL + D+ F I + +LG+ V +
Sbjct: 236 AAREALEVAGLTVGDLVAFVPHQANLRIIDVLV-------DRLGVPEHVVVSRDA----- 283
Query: 327 ALGHPLGATGARCVATLLSEMKRRGK 352
G T + VA L + R G
Sbjct: 284 ---EDTGNTSSASVALALDRLVRSGA 306
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 29.8 bits (68), Expect = 1.6
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 15/62 (24%)
Query: 179 NTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAV 238
N ++DP +E I V++G I + +++ D G +
Sbjct: 53 NGYVIDPSQNLEGEFDILVENGK-----IKKI----------DKNILVPEAEIIDAKGLI 97
Query: 239 LL 240
+
Sbjct: 98 VC 99
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 29.7 bits (66), Expect = 1.8
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 231 VSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQID 290
S G G L + + A G LGVF G + A K+AGL
Sbjct: 69 ASSGYG--LASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSK 126
Query: 291 DINLFEINEAFASQYVYCIKK 311
IN ++A +Q + IK
Sbjct: 127 SINGDAFSDAARAQVIELIKT 147
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical
protein, JW0472, structural genomics, NPPSFA; 2.25A
{Escherichia coli}
Length = 113
Score = 27.8 bits (62), Expect = 2.2
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 126 ARDCLLPMGITSENVAQRFGVTRQ 149
+ L P+ + +A+ V R
Sbjct: 16 LYEYLEPLDLKINELAELLHVHRN 39
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 29.4 bits (67), Expect = 2.3
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 22/127 (17%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 286
+ G G V++ + A+ +G I + A V PS G G + A+
Sbjct: 232 AGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHGVD 289
Query: 287 LQIDDIN-------LFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGAR- 338
ID +N + ++ E A I+++ + ++ GH LGA G +
Sbjct: 290 TPIDYLNSHGTSTPVGDVKELAA------IREV-FGDKSPAISATKAMTGHSLGAAGVQE 342
Query: 339 CVATLLS 345
+ +LL
Sbjct: 343 AIYSLLM 349
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap
binding site, hydrolase-DNA complex, DNA repair,
replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A*
3q8m_A*
Length = 341
Score = 29.4 bits (66), Expect = 2.3
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 267 PSVMGIGPAVA------------IPAAVKSAGLQI-DDINLFEINEAFASQYVYCIKKLG 313
S+ GIGP A I + + ++ E ++ F V + +
Sbjct: 235 ESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVE 294
Query: 314 LDPEKVNVNG 323
L + N
Sbjct: 295 LKWSEPNEEE 304
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 29.1 bits (65), Expect = 2.6
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 267 PSVMGIGPAVA------------IPAAVKSAGLQIDDINLF-EINEAFASQYVYCIKKLG 313
S+ GIGP A I + + + L E ++ F V + +
Sbjct: 235 ESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVE 294
Query: 314 LDPEKVNVNG 323
L + N
Sbjct: 295 LKWSEPNEEE 304
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element
functions, DNA binding P; 2.00A {Coxiella burnetii}
Length = 104
Score = 27.7 bits (62), Expect = 2.7
Identities = 2/24 (8%), Positives = 9/24 (37%)
Query: 126 ARDCLLPMGITSENVAQRFGVTRQ 149
A + +++ +A+ +
Sbjct: 19 AEELGFLDKMSANQLAKHLAIPTN 42
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP:
c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Length = 232
Score = 28.7 bits (64), Expect = 3.1
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 256 VFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQ--IDDINLFEINEAF---ASQYVYCIK 310
R G+ +++ G +I A V AGL+ D + + + + Y +
Sbjct: 103 SLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQ 162
Query: 311 KLGLDPEKV 319
LGLD +
Sbjct: 163 ALGLDRSAI 171
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose
degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Length = 355
Score = 28.8 bits (64), Expect = 3.4
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 300 AFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGA 337
+K G PEKV+V G P+G + A
Sbjct: 245 NRFKPMATFTEKNGYPPEKVDVATGKAQGKGPVGFSAA 282
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 29.1 bits (65), Expect = 3.8
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 20/76 (26%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD---------PSVMGIGPA--VAIPA 280
++ AVLL K+SLA + + + D PS G I +
Sbjct: 225 AEAVVAVLLTKKSLA----RRVYATILN-AGTNTDGSKEQGVTFPS----GDVQEQLIRS 275
Query: 281 AVKSAGLQIDDINLFE 296
AG + + E
Sbjct: 276 LYAPAGPDPESLEYIE 291
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.4 bits (63), Expect = 5.6
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 255 GVFR--SFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDI 292
GV+ + S G+D VM +G V A + D+
Sbjct: 318 GVYSPVALSKYGIDVPVMNLGLGVERLAMIS---GNFADV 354
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 28.3 bits (64), Expect = 5.7
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 22/77 (28%)
Query: 232 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD---------PSVMGIGPA---VAIP 279
S+G AVLL K+SLA + + + D PS G + I
Sbjct: 227 SEGVVAVLLTKKSLAR----RVYATILN-AGTNTDGFKEQGVTFPS----GDIQEQL-IR 276
Query: 280 AAVKSAGLQIDDINLFE 296
+ +SAG+ + E
Sbjct: 277 SLYQSAGVAPESFEYIE 293
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.0 bits (62), Expect = 6.2
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 255 GVFRS--FSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDI 292
GV+ S G+D VM +G V A + D+
Sbjct: 318 GVYSPVALSKYGIDVPVMNLGLGVERLAMIS---GNFADV 354
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium; 1.79A {Legionella pneumophila subsp}
Length = 265
Score = 27.6 bits (62), Expect = 7.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 170 KFKDEIIPVNTKIVDPKTGVEKRVT 194
K + EI+ + + VDP ++
Sbjct: 101 KLRKEIVTMGVQKVDPSYNAGTYLS 125
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 27.6 bits (62), Expect = 8.1
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 255 GVFRSFSAVGVDPSVMGIGPAVAIPAAVKSA 285
++ S AVG P +G AI A+++A
Sbjct: 682 AIYAS-KAVGEPPLFLGASVFFAIKDAIRAA 711
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,190,006
Number of extensions: 396898
Number of successful extensions: 1180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1087
Number of HSP's successfully gapped: 123
Length of query: 399
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 303
Effective length of database: 4,021,377
Effective search space: 1218477231
Effective search space used: 1218477231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)