BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015825
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 126/181 (69%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L +E S+FGFSVSHTTR PR E+DG Y+F R +M++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS EAV AV + C+LD+D+QG RS++ + L I+IF+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
PS++ LE+RLR R TETE+ + KRL A+ +++ K G+FD ++ ND L++ Y LK+
Sbjct: 125 PSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQA 184
Query: 314 L 314
L
Sbjct: 185 L 185
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 128/186 (68%), Gaps = 2/186 (1%)
Query: 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSV 189
G++ +P+VI+GPSG GK TL+ L E+P FGFSV TTR PRA E +G Y+F
Sbjct: 14 GSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDE 73
Query: 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP-LDAIF 248
+ IK+ +F+E+A GN YG++V +V+ V+ +GK CILDID+QG +SV+A P L+A F
Sbjct: 74 FKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARF 133
Query: 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308
+FI PPS+E+L++RL RGTETE+ I KRL A+ E+ + +G D ++ ND L++ Y+
Sbjct: 134 LFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-TGAHDKVIVNDDLDKAYK 192
Query: 309 NLKKHL 314
LK +
Sbjct: 193 ELKDFI 198
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 126/182 (69%), Gaps = 2/182 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+P+VI+GPSG GK TL+ L E+P FGFSVS TTR PRA E +G Y+F +
Sbjct: 3 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 62
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP-LDAIFIFIC 252
IK+ +F+E+A GN YG++V +V+ V+ +GK CILDID+QG +SV+A P L+A F+FI
Sbjct: 63 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 122
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PPS+E+L++RL RGTETE+ I KRL A+ E+ + +G D ++ ND L++ Y+ LK
Sbjct: 123 PPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-TGAHDKVIVNDDLDKAYKELKD 181
Query: 313 HL 314
+
Sbjct: 182 FI 183
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 126/182 (69%), Gaps = 2/182 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+P+VI+GPSG GK TL+ L E+P FGFSVS TTR PRA E +G Y+F +
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP-LDAIFIFIC 252
IK+ +F+E+A GN YG++V +V+ V+ +GK CILDID+QG +SV+A P L+A F+FI
Sbjct: 62 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PPS+E+L++RL RGTETE+ I KRL A+ E+ + +G D ++ ND L++ Y+ LK
Sbjct: 122 PPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-TGAHDKVIVNDDLDKAYKELKD 180
Query: 313 HL 314
+
Sbjct: 181 FI 182
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 119/203 (58%), Gaps = 5/203 (2%)
Query: 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT 185
+G + N+ P+VI GPSGVGKGTLI L+ EFP+ F FSVS TTR R EK+GV Y+F
Sbjct: 17 RGSMNNI-YPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFI 75
Query: 186 ERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPL- 244
++++ E +K+ FLE+ + N YGT + + K C+ ++++ G + ++ S
Sbjct: 76 DKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHI 135
Query: 245 -DAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL 303
+A++IFI PPS + L RL R TE ++QI KR+ E+ + F+ + ND L
Sbjct: 136 KNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLN-FNLSIINDDL 194
Query: 304 EECYENLKKHLGLDGSIATNHQT 326
Y+ LK +L L+ I N+ T
Sbjct: 195 TLTYQQLKNYL-LNSYIHLNNHT 216
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 110/169 (65%), Gaps = 3/169 (1%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+V++GPSGVGKGT+ + ++ + + +S+S TTR R E DGV Y F R E IK
Sbjct: 9 IVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIK 68
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
D +F+E+A GN YGT V+ V+ D G L+I+V+GA+ VR DA+FIF+ PPS
Sbjct: 69 DDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS 128
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE 304
+E L ERL RGTE++++I R+ A++E++ ++D+++ ND++E
Sbjct: 129 LEHLRERLVGRGTESDEKIQSRINEARKEVEM---MNLYDYVVVNDEVE 174
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 116/188 (61%), Gaps = 6/188 (3%)
Query: 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF 184
++G V + VV++GPS VGK T++ L + P++ FSVS TTRAPR E DGV YHF
Sbjct: 15 ARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSATTRAPRPGEVDGVDYHF 73
Query: 185 TERSVMEKAIKDGKFLEFASVHGNLY--GTSVEAVEAVADAGKRCILDIDVQGARSVRAS 242
+ + ++ I G+ LE+A +HG L+ GT + V A A G ++++D+ GAR+++ +
Sbjct: 74 IDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT 133
Query: 243 PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDK 302
+A+ +F+ PPS ++L+ RL RGTET D I +RL A+ E+ + G FD ++ N +
Sbjct: 134 MPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIEL---AAQGDFDKVVVNRR 190
Query: 303 LEECYENL 310
LE L
Sbjct: 191 LESACAEL 198
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 116/188 (61%), Gaps = 6/188 (3%)
Query: 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF 184
++G V + VV++GPS VGK T++ L + P++ FSVS TTRAPR E DGV YHF
Sbjct: 12 ARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSATTRAPRPGEVDGVDYHF 70
Query: 185 TERSVMEKAIKDGKFLEFASVHGNLY--GTSVEAVEAVADAGKRCILDIDVQGARSVRAS 242
+ + ++ I G+ LE+A +HG L+ GT + V A A G ++++D+ GAR+++ +
Sbjct: 71 IDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT 130
Query: 243 PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDK 302
+A+ +F+ PPS ++L+ RL RGTET D I +RL A+ E+ + G FD ++ N +
Sbjct: 131 MPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIEL---AAQGDFDKVVVNRR 187
Query: 303 LEECYENL 310
LE L
Sbjct: 188 LESACAEL 195
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 3/182 (1%)
Query: 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194
P+V+ GPSGVGKGTLI ++ EFPS F FS+S TTR R E +GV Y+F ++ E+ +
Sbjct: 14 PLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL 73
Query: 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP--LDAIFIFIC 252
K+G+FLEF N YGT + GK C+ + ++ G + ++ S D I+IF+
Sbjct: 74 KEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDGIYIFVK 133
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PPS++ L RL+ R TE ++I KR + E + G F++ + ND L Y L++
Sbjct: 134 PPSIDILLGRLKNRNTEKPEEINKRXQELTREXDEADKVG-FNYFIVNDDLARTYAELRE 192
Query: 313 HL 314
+L
Sbjct: 193 YL 194
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 102/155 (65%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+V++GPSGVGKGT+ + K+ + F +S+S TTR PR E+DGV Y+F R V E+AIK
Sbjct: 11 IVLSGPSGVGKGTVREAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQAIK 70
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
DGK LE+A GN YGT +E VE AG L+I+VQGA VR + + IFIF+ PP
Sbjct: 71 DGKXLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAXQVRKAXPEGIFIFLTPPD 130
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290
+ EL+ R+ RGTE+ + + +R AK+EI+ S
Sbjct: 131 LSELKNRIIGRGTESXEVVEERXETAKKEIEXXAS 165
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 114/188 (60%), Gaps = 6/188 (3%)
Query: 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF 184
++G V + VV++GPS VGK T++ L + P++ FSVS TTR PR E DGV YHF
Sbjct: 15 ARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSATTRCPRPGEVDGVDYHF 73
Query: 185 TERSVMEKAIKDGKFLEFASVHGNLY--GTSVEAVEAVADAGKRCILDIDVQGARSVRAS 242
+ + ++ I G+ LE+A +HG L+ GT + V A A G ++++D+ GAR+++ +
Sbjct: 74 IDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT 133
Query: 243 PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDK 302
+A+ +F+ PPS ++L+ RL RG ET D I +RL A+ E+ + G FD ++ N +
Sbjct: 134 MPEAVTVFLAPPSWQDLQARLIGRGCETADVIQRRLDTARIEL---AAQGDFDKVVVNRR 190
Query: 303 LEECYENL 310
LE L
Sbjct: 191 LESACAEL 198
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
Query: 137 VITGPSGVGKGTLISMLMKEFPSM-FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+++ PSG GK +LI L+K P SVSHTTR PR E G HY F ++ I
Sbjct: 8 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 67
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
FLE A V GN YGTS EA+E V G LDID QGA+ +R A IFI PPS
Sbjct: 68 RDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPS 127
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
EL+ RLR RG ++E+ I KR+ A E+ +D+++ ND + +LK
Sbjct: 128 KIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAE---YDYLIVNDDFDTALTDLK 180
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 95/176 (53%), Gaps = 4/176 (2%)
Query: 137 VITGPSGVGKGTLISMLMKEFPSM-FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+++ PSG GK +LI L+K P SVSHTTR PR E G HY F ++ I
Sbjct: 20 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEXIS 79
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
FLE A V GN YGTS EA+E V G LDID QGA+ +R A IFI PPS
Sbjct: 80 RDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKXPHARSIFILPPS 139
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
EL+ RLR RG ++E+ I KR A + + +D+++ ND + +LK
Sbjct: 140 KIELDRRLRGRGQDSEEVIAKRXAQA---VAEXSHYAEYDYLIVNDDFDTALTDLK 192
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 137 VITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKD 196
+I+ PSG GK +L+ L+K + S+SHTTR R +++GV Y F + + + +K+
Sbjct: 11 IISAPSGAGKTSLVRALVKALAEI-KISISHTTRPKRPGDQEGVDYFFIDETRFQAXVKE 69
Query: 197 GKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSM 256
G FLE A+++ YGT + V AG+ +L+ID QGAR +R A+ IFI PPS+
Sbjct: 70 GAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSI 129
Query: 257 EELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310
E L ERL R + I +RL A+EE K FD+++ ND ++ +NL
Sbjct: 130 EALRERLIKRRQDDTAIIEQRLALAREEXAHYKE---FDYLVVNDNFDQAVQNL 180
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF-TERSV 189
N +PV+I GP K + L+ EFP FG V HTTR R E DG YHF T R
Sbjct: 104 NYTRPVIILGPM---KDRVNDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQ 160
Query: 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFI 249
MEK I++ KF+E + +LYGTSV++V AVA+ GK CILD+ + ++ + L I I
Sbjct: 161 MEKDIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKHCILDVSGNAIKRLQIAQLYPISI 220
Query: 250 FICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN 309
FI P SME + E + E + +R ++E + F I+ D LE+ Y
Sbjct: 221 FIKPKSMENIMEMNKRLTDEQARKTFERAVRLEQEFTEH-----FTAIVQGDTLEDIYNQ 275
Query: 310 LKK 312
+K+
Sbjct: 276 VKQ 278
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF-TERSVMEK 192
+P++I GP+ K L+ EFP FG V HTTR R E DG YHF + R MEK
Sbjct: 532 RPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 588
Query: 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFIC 252
I+ KF+E + +LYGTSV++V VA+ GK CILD+ R ++A+ L I IFI
Sbjct: 589 DIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 648
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
P S+E + E + E + R ++E + F I+ D EE Y +K+
Sbjct: 649 PRSLENVLEINKRITEEQARKAFDRATKLEQEFTE-----CFSAIVEGDSFEEIYHKVKR 703
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 99/183 (54%), Gaps = 15/183 (8%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF-TERSVMEK 192
+P++I GP+ K L+ EFP FG V HTTR R E DG YHF + R MEK
Sbjct: 112 RPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 168
Query: 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFIC 252
I+ KF+E + +LYGTSV++V VA+ GK CILD+ R ++A+ L I IFI
Sbjct: 169 DIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 228
Query: 253 PPSME---ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN 309
P S+E E+ +R+ TE+Q K A + + + + F I+ D EE Y
Sbjct: 229 PRSLENVLEINKRI------TEEQARKAFDRATK--LEQEFTECFSAIVEGDSFEEIYHK 280
Query: 310 LKK 312
+K+
Sbjct: 281 VKR 283
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 99/183 (54%), Gaps = 15/183 (8%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF-TERSVMEK 192
+P++I GP+ K L+ EFP FG V HTTR R E DG YHF + R MEK
Sbjct: 106 RPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 162
Query: 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFIC 252
I+ KF+E + +LYGTSV++V VA+ GK CILD+ R ++A+ L I IFI
Sbjct: 163 DIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 222
Query: 253 PPSME---ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN 309
P S+E E+ +R+ TE+Q K A + + + + F I+ D EE Y
Sbjct: 223 PRSLENVLEINKRI------TEEQARKAFDRATK--LEQEFTECFSAIVEGDSFEEIYHK 274
Query: 310 LKK 312
+K+
Sbjct: 275 VKR 277
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
K +V+ G SGVG+ + + L+ + P F + V +TTR PR E+DG YHF M +
Sbjct: 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRN 79
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I +FLEF S GN++GT E V + K ILDI+ Q + VR + L +FI P
Sbjct: 80 ISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAP 139
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
+GT+TE L++L+ E I+ + + FD L N+ ++E + L++
Sbjct: 140 TD----------QGTQTE--ALQQLQKDSEAIR-SQYAHYFDLSLVNNGVDETLKKLQE 185
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF-TERSV 189
N +PV+I GP K + L+ E+P FG V HTTR R E DG YHF + R
Sbjct: 98 NYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQ 154
Query: 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFI 249
ME+ I++ F+E + NLYGTSV +V VA+ GK CILD+ + ++ + L + +
Sbjct: 155 MERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAV 214
Query: 250 FICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG-IFDHILYNDKLEECYE 308
FI P S++ + E R TE+Q K A IK + G F ++ D +EE Y
Sbjct: 215 FIKPKSVDSVMEMNRRM---TEEQAKKTYERA---IKMEQEFGEYFTGVVQGDTIEEIYS 268
Query: 309 NLK 311
+K
Sbjct: 269 KVK 271
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+V++ PSG GK T+ + L+++ + SVS TTRA R EK+G Y+F +R +
Sbjct: 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGA-RSVRASPLDAIFIFICPP 254
+G+ +E A V GN YG + +E D G +L ID QGA + + + IFI PP
Sbjct: 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPP 149
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEE 305
SMEEL RL R + + + RL+ A EI ++ +D+++ N+ +EE
Sbjct: 150 SMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEA---YDYVIVNEDIEE 197
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 99/187 (52%), Gaps = 10/187 (5%)
Query: 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSV 189
++ K +V+ G GVG+ + + L+ + P F + + HTTR P+ E++G +Y+F
Sbjct: 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61
Query: 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFI 249
M + I + ++LE+ S +YGT +E + + + G ILD++ Q + +R + +
Sbjct: 62 MMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVV 121
Query: 250 FICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN 309
FI P++ G ED+ L+RL+ + +I Q + FD + N++++E +
Sbjct: 122 FIAAPTI--------TPGL-NEDESLQRLQK-ESDILQRTYAHYFDLTIINNEIDETIRH 171
Query: 310 LKKHLGL 316
L++ + L
Sbjct: 172 LEEAVEL 178
>pdb|3NM1|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
Length = 540
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 74 CKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVVGAE-VVAWSKGVIGNV 132
C H+ L+ DRI V + + ++ P +R K+VG + V+ WS G V
Sbjct: 65 CHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIR---KLVGPDMVIGWSVGFPEEV 121
Query: 133 EKPVVITGPSGV---GKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHY 182
++ + GP V G GTL L K+ P + R A+E++ H+
Sbjct: 122 DE-LSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHW 173
>pdb|3NL2|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
Length = 540
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 74 CKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVVGAE-VVAWSKGVIGNV 132
C H+ L+ DRI V + + ++ P +R K+VG + V+ WS G V
Sbjct: 65 CHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIR---KLVGPDMVIGWSVGFPEEV 121
Query: 133 EKPVVITGPSGV---GKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHY 182
++ + GP V G GTL L K+ P + R A+E++ H+
Sbjct: 122 DE-LSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHW 173
>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker
Length = 339
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV+ GPS KG ++ +M++ ++F F + H ++ + +RSV+
Sbjct: 145 RPVVLVGPSL--KGYEVTDMMQK--ALFDF-LKHRFEGRISITRVTADISLAKRSVLNNP 199
Query: 194 IKDGKFLEFASVHGNL--YGTSVEAVEAVADAGKRCILDID-VQGARSVRASPLDAIFIF 250
K +E ++ +L + +E + +A + +LD D + + + L I ++
Sbjct: 200 SKHA-IIERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVY 258
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310
+ S + L+ +++RG +++ + L A +++ Q +FD IL ++LE+ E+L
Sbjct: 259 VKISSPKVLQRLIKSRG-KSQAKHLNVQMVAADKLAQCPPE-LFDVILDENQLEDACEHL 316
Query: 311 KKHLGLDGSIATNHQTSPKGIDLP 334
+L A T P +LP
Sbjct: 317 ADYLE-----AYWKATHPPSSNLP 335
>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core In Complex With
Alpha1 Interaction Domain
pdb|1T3S|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core
Length = 337
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV+ GPS KG ++ +M++ ++F F + H ++ + +RSV+
Sbjct: 143 RPVVLVGPSL--KGYEVTDMMQK--ALFDF-LKHRFEGRISITRVTADISLAKRSVLNNP 197
Query: 194 IKDGKFLEFASVHGNL--YGTSVEAVEAVADAGKRCILDID-VQGARSVRASPLDAIFIF 250
K +E ++ +L + +E + +A + +LD D + + + L I ++
Sbjct: 198 SKHA-IIERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVY 256
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310
+ S + L+ +++RG +++ + L A +++ Q +FD IL ++LE+ E+L
Sbjct: 257 VKISSPKVLQRLIKSRG-KSQAKHLNVQMVAADKLAQCPPE-LFDVILDENQLEDACEHL 314
Query: 311 KKHLGLDGSIATNHQTSPKGIDLP 334
+L A T P +LP
Sbjct: 315 ADYLE-----AYWKATHPPSSNLP 333
>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker
Length = 337
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV+ GPS KG ++ +M++ ++F F + H ++ + +RSV+
Sbjct: 143 RPVVLVGPSL--KGYEVTDMMQK--ALFDF-LKHRFEGRISITRVTADISLAKRSVLNNP 197
Query: 194 IKDGKFLEFASVHGNL--YGTSVEAVEAVADAGKRCILDID-VQGARSVRASPLDAIFIF 250
K +E ++ +L + +E + +A + +LD D + + + L I ++
Sbjct: 198 SKHA-IIERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVY 256
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310
+ S + L+ +++RG +++ + L A +++ Q +FD IL ++LE+ E+L
Sbjct: 257 VKISSPKVLQRLIKSRG-KSQAKHLNVQMVAADKLAQCPPE-LFDVILDENQLEDACEHL 314
Query: 311 KKHLGLDGSIATNHQTSPKGIDLP 334
+L A T P +LP
Sbjct: 315 ADYLE-----AYWKATHPPSSNLP 333
>pdb|4HG4|K Chain K, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|M Chain M, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|O Chain O, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Q Chain Q, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|S Chain S, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|U Chain U, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|W Chain W, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Y Chain Y, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|ZZ Chain z, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 214
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 15/59 (25%)
Query: 334 PADHSVSKVANKVIIKCGAAE-------------GKASKNLMVLDVSSLKGGAPGRTRG 379
P+ S S V ++V I C A++ GKA NL++ D S++K G P R RG
Sbjct: 8 PSSLSAS-VGDRVTITCQASQDIRKYLNWYQQKPGKA-PNLLIYDASNVKTGVPSRFRG 64
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 136 VVITGPSGVGKGTLISMLMKEF-PSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194
++ITG GVGK TL+ +++ GF + R P ++ G TE +K I
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFW-TEEVRDPETKKRTGFRIITTE---GKKKI 58
Query: 195 KDGKFLEFASVHGNLYGTSVEAVEAVA 221
KF + G+ YG +V+ E +A
Sbjct: 59 FSSKFFTSKKLVGS-YGVNVQYFEELA 84
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269
+G ++E RC+ V+ R +ASP D FI C P R
Sbjct: 117 FGMGKRSIEDRVQEEARCL----VEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDY 172
Query: 270 TEDQILKRLRNAKEEIKQGKSSGI 293
+ Q L + E IK S I
Sbjct: 173 KDQQFLNLMEKLNENIKILSSPWI 196
>pdb|4FMR|A Chain A, Crystal Structure Of A Hypothetical Protein (Bvu_2165)
From Bacteroides Vulgatus Atcc 8482 At 2.25 A Resolution
pdb|4FMR|B Chain B, Crystal Structure Of A Hypothetical Protein (Bvu_2165)
From Bacteroides Vulgatus Atcc 8482 At 2.25 A Resolution
pdb|4FMR|C Chain C, Crystal Structure Of A Hypothetical Protein (Bvu_2165)
From Bacteroides Vulgatus Atcc 8482 At 2.25 A Resolution
pdb|4FMR|D Chain D, Crystal Structure Of A Hypothetical Protein (Bvu_2165)
From Bacteroides Vulgatus Atcc 8482 At 2.25 A Resolution
Length = 265
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 1 MGEAPA-FIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDESIGVKIYDRSTG 59
+GE P F + + Q+ + FS + T+ G K +AG+D S+GV + +TG
Sbjct: 124 LGERPTKFYIGSGQDATTRATDFSATA--GRNFTLFG-KNLTVAGTDPSVGVTLASAATG 180
Query: 60 NWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPY 109
V I+ + ++LNE L+I +S +D + L V T Y
Sbjct: 181 -----TVTKID------NDXIVLNEPSRLIILLPASLEDGEYXLTVTTQY 219
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
Query: 11 NLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIA----GSDESI-------GVKIYDRSTG 59
NLQN N S+ + S CE T IG K +V++ +DE I GV +D+ +G
Sbjct: 284 NLQNANNKSDSKTPNSGTCE-VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342
Query: 60 NWLI 63
N L+
Sbjct: 343 NPLL 346
>pdb|2R98|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase (Selenomet
Substituted) From Neisseria Gonorrhoeae
Length = 456
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 165 VSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAG 224
+ H R +E+ G+ H + R +E I + LE GNLYG + A AD G
Sbjct: 317 IPHIAALIRPLEEQGILLHRS-REYLENHISEFSILEH---DGNLYGCAALKTFAEADCG 372
Query: 225 KRCILDIDVQ 234
+ L + Q
Sbjct: 373 EIACLAVSPQ 382
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 165 VSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAG 224
+ H R +E+ G+ H + R +E I + LE GNLYG + A AD G
Sbjct: 317 IPHIAALIRPLEEQGILLHRS-REYLENHISEFSILEH---DGNLYGCAALKTFAEADCG 372
Query: 225 KRCILDIDVQ 234
+ L + Q
Sbjct: 373 EIACLAVSPQ 382
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162
N + V + G SG GK T+IS+L++ + + G
Sbjct: 442 NAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473
>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
Length = 611
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 223 AGKRCILD--IDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280
AG R +L+ +D + + P+DA +F P M E ++L E IL N
Sbjct: 86 AGLRVVLEEWLDTYAGKDWESRPVDARLLFQYVPQMHEGAKKLMQLLEEDTVAILDSQLN 145
Query: 281 AKEEIKQGKSSGI 293
K+++ Q K+ GI
Sbjct: 146 EKQKV-QVKALGI 157
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME 176
+++ G SG+GK TL++ L K S S + + P+ +E
Sbjct: 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE 45
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 223 AGKRCILD--IDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280
AG R +L+ +D + + P+DA +F P M E ++L E IL N
Sbjct: 86 AGLRVVLEEWLDTYAGKDWESRPVDARLLFQYVPQMHEGAKKLMQLLEEDTVAILDSQLN 145
Query: 281 AKEEIKQGKSSGI 293
K+++ Q K+ GI
Sbjct: 146 EKQKV-QVKALGI 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,968,692
Number of Sequences: 62578
Number of extensions: 500497
Number of successful extensions: 1774
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1725
Number of HSP's gapped (non-prelim): 47
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)